##fileformat=VCFv4.2 ##FILTER= 60.0 || MQ < 40.0 || DP < 10 || MQRankSum < -12.5 || ReadPosRankSum < -8.0"> ##FILTER= ##FILTER= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##GATKCommandLine.ApplyRecalibration= ##GATKCommandLine.UnifiedGenotyper= ##GATKCommandLine.VariantFiltration= 60.0 || MQ < 40.0 || DP < 10 || MQRankSum < -12.5 || ReadPosRankSum < -8.0] filterName=[FAIL] genotypeFilterExpression=[] genotypeFilterName=[] clusterSize=3 clusterWindowSize=0 maskExtension=0 maskName=Mask filterNotInMask=false missingValuesInExpressionsShouldEvaluateAsFailing=false invalidatePreviousFilters=false invertFilterExpression=false invertGenotypeFilterExpression=false setFilteredGtToNocall=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false"> ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##reference=file:///data1/genomes/Hg19_genome/Homo_sapiens_sequence_hg19.fa #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PA_2 1 17452 rs200503540 C T 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.22;MQ0=10;MQRankSum=-2.951;QD=2.28;ReadPosRankSum=-0.558;SB=-7.900e+01;SOR=0.945;VQSLOD=0.820;culprit=QD GT:AD:DP:GQ:PL 0/1:49,10:59:99:163,0,1055 1 17538 rs200046632 C A 143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.368;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.98;MQ0=7;MQRankSum=0.690;QD=3.00;ReadPosRankSum=-0.158;SB=-8.300e+01;SOR=0.534;VQSLOD=1.54;culprit=QD GT:AD:DP:GQ:PL 0/1:39,9:48:99:172,0,898 1 234308 rs200066978 A G 60.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.590;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.41;MQ0=1;MQRankSum=-1.879;QD=4.05;ReadPosRankSum=-0.779;SB=-1.765e+00;SOR=0.693;VQSLOD=2.04;culprit=QD GT:AD:DP:GQ:PL 0/1:10,5:15:89:89,0,320 1 762273 rs3115849 G A 2300.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8914;MLEAC=2;MLEAF=1.00;MQ=40.35;MQ0=3;POSITIVE_TRAIN_SITE;QD=27.07;SB=-1.195e+03;SOR=0.793;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:86:99:2329,184,0 1 762589 rs71507461 G C 491.85 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.076;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=1;MQRankSum=2.389;POSITIVE_TRAIN_SITE;QD=25.89;ReadPosRankSum=0.914;SB=-4.276e+01;SOR=2.093;VQSLOD=2.47;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:3,16:19:17:520,17,0 1 762592 rs71507462 C G 500.94 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.441;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=1;MQRankSum=2.394;POSITIVE_TRAIN_SITE;QD=27.83;ReadPosRankSum=1.119;SB=-3.876e+01;SOR=1.981;VQSLOD=2.68;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:3,15:18:14:529,14,0 1 762601 rs71507463 T C 503.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=1;MQRankSum=1.830;POSITIVE_TRAIN_SITE;QD=31.49;ReadPosRankSum=0.116;SB=-4.276e+01;SOR=2.584;VQSLOD=1.65;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,14:16:39:532,39,0 1 777232 rs112618790 C T 326.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.760;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=-1.263;SB=-9.900e+01;SOR=1.236;VQSLOD=7.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,12:23:99:355,0,241 1 792263 rs1044922 A G 1927.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2232;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=8;POSITIVE_TRAIN_SITE;QD=24.10;SB=-7.130e+02;SOR=1.778;VQSLOD=3.79;culprit=FS GT:AD:DP:GQ:PL 1/1:4,76:80:99:1956,153,0 1 792480 rs2905036 C T 2045.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-6.240e+02;SOR=2.406;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2074,162,0 1 808631 . G A 133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.16;ReadPosRankSum=-1.063;SB=-3.876e+01;SOR=0.223;VQSLOD=8.24;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:162,0,153 1 808922 . G A 2099.77 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=31.81;SB=-9.680e+02;SOR=1.376;VQSLOD=5.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2128,157,0 1 808928 . C T 831.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.778;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.12;MQ0=0;MQRankSum=0.070;QD=12.05;ReadPosRankSum=2.456;SB=-4.350e+02;SOR=0.650;VQSLOD=1.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,34:69:99:860,0,948 1 824039 rs112229890 G A 65.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.415;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.9339;MLEAC=1;MLEAF=0.500;MQ=53.39;MQ0=0;MQRankSum=-0.949;QD=6.58;ReadPosRankSum=0.411;SB=0.00;SOR=1.329;VQSLOD=1.86;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:94:94,0,150 1 824115 rs77649307 A C 506.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=44.88;MQ0=0;QD=22.03;SB=-3.350e+02;SOR=0.963;VQSLOD=2.59;culprit=QD GT:AD:DP:GQ:PL 1/1:0,23:23:42:535,42,0 1 824142 . C T 412.77 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9980;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=22.93;SB=-1.821e+02;SOR=1.863;VQSLOD=2.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:36:441,36,0 1 824154 rs75544799 A G 401.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9645;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=23.63;SB=-1.673e+02;SOR=2.179;VQSLOD=3.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:33:430,33,0 1 824187 . C T 62.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=43.06;MQ0=0;MQRankSum=0.261;QD=4.83;ReadPosRankSum=1.102;SB=-9.732e-01;SOR=1.022;VQSLOD=1.69;culprit=QD GT:AD:DP:GQ:PL 0/1:10,3:13:91:91,0,203 1 824200 rs78710133 T G 100.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.895;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.33;MQ0=0;MQRankSum=-0.573;QD=8.40;ReadPosRankSum=-0.388;SB=-1.765e+00;SOR=1.371;VQSLOD=2.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,5:12:99:129,0,170 1 824201 rs76258366 G C 335.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=27.98;SB=-4.276e+01;SOR=3.611;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:364,27,0 1 865694 rs9988179 C T 743.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.576;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=1.760;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.26;ReadPosRankSum=0.000;SB=-4.870e+02;SOR=0.598;VQSLOD=7.99;culprit=QD GT:AD:DP:GQ:PL 0/1:55,35:90:99:772,0,1330 1 866319 rs9988021 G A 912.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-5.180e+02;SOR=0.976;VQSLOD=5.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:69:941,69,0 1 871215 rs28419423 C G 499.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.557;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.219;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=2.006;SB=-2.840e+02;SOR=0.495;VQSLOD=8.39;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:19,21:40:99:528,0,494 1 874762 rs139437968 C T 391.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.581;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.52;ReadPosRankSum=1.787;SB=-1.980e+02;SOR=1.019;VQSLOD=5.95;culprit=QD GT:AD:DP:GQ:PL 0/1:29,17:46:99:420,0,749 1 874927 rs2340591 A G 189.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=5.035;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=-0.134;SB=-1.330e+02;SOR=0.116;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:218,0,257 1 874950 rs33939111 T TCCCTGGAGGACC 2120.73 PASS AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.63;SB=-5.423e+02;SOR=1.911;VQSLOD=5.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:17:45:2158,45,0 1 876499 rs4372192 A G 528.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.09;SB=-8.197e+01;SOR=3.126;VQSLOD=4.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:557,42,0 1 879676 rs6605067 G A 957.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.21;SB=-1.543e+02;SOR=3.258;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:29:72:986,72,0 1 879687 rs2839 T C 837.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SB=-1.115e+02;SOR=3.528;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:66:866,66,0 1 880238 rs3748592 A G 1472.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-6.510e+02;SOR=1.464;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1501,111,0 1 882033 rs2272756 G A 1081.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.17;ReadPosRankSum=-0.771;SB=-3.460e+02;SOR=0.789;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:23,40:63:99:1110,0,596 1 883625 rs4970378 A G 1114.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=-5.200e+02;SOR=1.308;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:37:84:1143,84,0 1 884091 . C G 237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;DP=64;Dels=0.00;ExcessHet=3.0103;FS=17.257;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.72;ReadPosRankSum=2.214;SB=-1.709e+01;SOR=3.033;VQSLOD=1.62;culprit=QD GT:AD:DP:GQ:PL 0/1:45,19:64:99:266,0,1061 1 884101 rs4970455 A C 768.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.136;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=12.547;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.73;ReadPosRankSum=-3.068;SB=-4.030e+02;SOR=0.057;VQSLOD=2.86;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:20,36:56:99:797,0,360 1 886788 rs10465242 G A 383.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.228;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.395;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=0.290;SB=-9.732e-01;SOR=1.569;VQSLOD=6.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,13:24:99:412,0,299 1 886817 rs10465241 C T 216.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=-0.996;SB=0.00;SOR=1.179;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:245,0,165 1 887560 rs3748595 A C 3807.77 PASS AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=-2.555e+03;SOR=0.771;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,131:131:99:3836,274,0 1 887801 rs3828047 A G 4112.77 PASS AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SB=-1.989e+03;SOR=1.133;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,123:123:99:4141,307,0 1 888220 rs28711536 G A 289.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.475;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=0.401;SB=-6.700e+01;SOR=0.602;VQSLOD=10.11;culprit=FS GT:AD:DP:GQ:PL 0/1:12,11:23:99:318,0,385 1 888639 rs3748596 T C 6836.77 PASS AC=2;AF=1.00;AN=2;DB;DP=220;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=-4.185e+03;SOR=0.827;VQSLOD=4.31;culprit=DP GT:AD:DP:GQ:PL 1/1:0,220:220:99:6865,494,0 1 888659 rs3748597 T C 6715.77 PASS AC=2;AF=1.00;AN=2;DB;DP=230;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6589;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.20;SB=-4.312e+03;SOR=0.841;VQSLOD=5.30;culprit=DP GT:AD:DP:GQ:PL 1/1:0,230:230:99:6744,485,0 1 889131 rs3828048 A G 521.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.326;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=7.215;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=-0.069;SB=-2.601e+01;SOR=2.324;VQSLOD=5.79;culprit=FS GT:AD:DP:GQ:PL 0/1:17,17:34:99:550,0,433 1 889158 rs13303056 G C 1486.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=-3.200e+02;SOR=2.833;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1515,114,0 1 889159 rs13302945 A C 1517.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.49;SB=-3.660e+02;SOR=2.636;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1546,114,0 1 889638 rs13303206 G C 661.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=-4.276e+01;SOR=4.294;VQSLOD=7.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:690,51,0 1 891485 rs144491071 C T 2831.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.614;DB;DP=230;Dels=0.00;ExcessHet=3.0103;FS=0.483;HaplotypeScore=5.2027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=1.086;SB=-1.681e+03;SOR=0.632;VQSLOD=6.18;culprit=DP GT:AD:DP:GQ:PL 0/1:124,106:230:99:2860,0,3278 1 892745 rs13303227 G A 369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.44;SB=-1.175e+02;SOR=2.147;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:398,30,0 1 894573 rs13303010 G A 1074.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.481;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=0.417;SB=-2.830e+02;SOR=0.579;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:61,39:100:99:1103,0,1727 1 897325 rs4970441 G C 4022.77 PASS AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.13;SB=-2.553e+03;SOR=0.889;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,143:143:99:4051,289,0 1 897398 . G A 1369.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.297;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.798;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-1.335;SB=-4.050e+02;SOR=0.815;VQSLOD=6.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,45:105:99:1398,0,1626 1 897564 rs13303229 T C 3254.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.26;SB=-1.299e+03;SOR=1.489;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:3283,241,0 1 897879 rs79008338 C T 1024.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.375;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.846;HaplotypeScore=3.5753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-0.919;SB=-3.350e+02;SOR=1.008;VQSLOD=6.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,45:106:99:1053,0,1658 1 898323 rs6605071 T C 1985.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.64;SB=-1.102e+03;SOR=0.990;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2014,144,0 1 899928 rs6677386 G C 677.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.47;SB=-1.453e+02;SOR=2.833;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:706,57,0 1 899937 rs143296006 G T 388.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.91;SB=0.00;SOR=5.283;VQSLOD=8.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:417,33,0 1 899938 rs147467971 G C 450.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.67;SB=0.00;SOR=5.283;VQSLOD=9.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:479,36,0 1 899942 rs71509448 G A 463.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=0.00;SOR=5.283;VQSLOD=7.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:492,39,0 1 900205 rs4970436 T C 382.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.848;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.64;ReadPosRankSum=-1.051;SB=0.00;SOR=0.776;VQSLOD=9.21;culprit=FS GT:AD:DP:GQ:PL 0/1:11,12:23:99:411,0,345 1 900285 rs4970435 C T 1738.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-4.580e+02;SOR=2.564;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1767,135,0 1 900286 rs4970434 A G 1965.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.89;SB=-4.800e+02;SOR=2.644;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1994,144,0 1 900319 rs80351873 G A 1251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.177;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=12.197;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=2.815;SB=-7.150e+02;SOR=0.185;VQSLOD=4.23;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:53,52:105:99:1280,0,1513 1 900505 rs28705211 G C 1611.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.977;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-0.316;SB=-6.390e+02;SOR=0.767;VQSLOD=8.30;culprit=FS GT:AD:DP:GQ:PL 0/1:50,59:109:99:1640,0,1311 1 901806 rs2879815 G C 622.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.036;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.87;ReadPosRankSum=-0.221;SB=-6.200e+01;SOR=1.255;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:13,20:33:99:651,0,353 1 902128 rs28499371 C T 735.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.559;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.09;ReadPosRankSum=0.586;SB=-4.490e+02;SOR=0.664;VQSLOD=8.77;culprit=QD GT:AD:DP:GQ:PL 0/1:54,37:91:99:764,0,1572 1 906272 rs28507236 A C 1029.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.210;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=1.867;HaplotypeScore=1.8934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-1.098;SB=-6.310e+02;SOR=0.811;VQSLOD=7.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,42:78:99:1058,0,837 1 907609 rs79890672 T C 1610.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.661;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=1.078;SB=-9.930e+02;SOR=0.733;VQSLOD=8.59;culprit=FS GT:AD:DP:GQ:PL 0/1:47,64:111:99:1639,0,1121 1 907622 rs59928984 G C 1721.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=1.572;SB=-1.106e+03;SOR=0.735;VQSLOD=8.45;culprit=FS GT:AD:DP:GQ:PL 0/1:50,66:116:99:1750,0,1201 1 908414 rs28504611 C T 725.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=4.452;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.64;ReadPosRankSum=0.672;SB=-3.980e+02;SOR=1.216;VQSLOD=6.69;culprit=QD GT:AD:DP:GQ:PL 0/1:49,35:84:99:754,0,1371 1 908823 rs28687780 G A 534.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.782;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.529;SB=-1.850e+02;SOR=0.804;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 0/1:26,19:45:99:563,0,645 1 909053 rs116854740 G A 328.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.470;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=8.701;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=0.525;SB=-1.400e+02;SOR=0.047;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 0/1:20,14:34:99:357,0,689 1 909238 rs3829740 G C 580.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-1.255e+02;SOR=2.833;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:609,45,0 1 909242 rs3829739 A G 319.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.695;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.629;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=0.248;SB=-3.200e+01;SOR=1.880;VQSLOD=5.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,11:19:99:348,0,190 1 909309 rs3829738 T C 359.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-0.243;SB=-1.980e+02;SOR=0.765;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 0/1:19,15:34:99:388,0,446 1 909555 rs2340594 A G 372.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.89;SB=-1.911e+02;SOR=0.859;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:401,33,0 1 909768 rs2340593 A G 2754.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.70;SB=-1.883e+03;SOR=0.693;VQSLOD=5.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:2783,202,0 1 911595 rs7417106 A G 636.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.586;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.426;SB=-3.520e+02;SOR=1.258;VQSLOD=7.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,27:48:99:665,0,509 1 911916 rs74045046 C T 1691.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.191;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.659;HaplotypeScore=1.9445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-0.935;SB=-1.164e+03;SOR=0.582;VQSLOD=8.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,71:129:99:1720,0,1361 1 912049 rs9803103 T C 283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.399;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=4.030;HaplotypeScore=2.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.47;ReadPosRankSum=0.047;SB=-2.004e+01;SOR=1.609;VQSLOD=5.45;culprit=QD GT:AD:DP:GQ:PL 0/1:26,12:38:99:312,0,769 1 914192 rs2340595 G C 677.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.89;SB=-2.001e+02;SOR=2.093;VQSLOD=4.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:51:706,51,0 1 914333 rs13302979 C G 315.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.52;ReadPosRankSum=-0.041;SB=-1.830e+02;SOR=0.634;VQSLOD=8.97;culprit=QD GT:AD:DP:GQ:PL 0/1:29,13:42:99:344,0,792 1 914852 rs13303368 G C 388.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.580;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.272;SB=-2.090e+02;SOR=0.625;VQSLOD=5.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,13:25:99:417,0,383 1 914876 rs13302983 T C 948.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=-5.160e+02;SOR=0.693;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:75:977,75,0 1 914940 rs13303033 T C 415.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=-0.746;SB=-2.040e+02;SOR=0.765;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:24,16:40:99:444,0,548 1 915227 rs13303355 A G 6034.77 PASS AC=2;AF=1.00;AN=2;DB;DP=191;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-3.531e+03;SOR=0.861;VQSLOD=6.07;culprit=DP GT:AD:DP:GQ:PL 1/1:0,191:191:99:6063,433,0 1 916549 rs6660139 A G 2221.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.72;SB=-5.010e+02;SOR=2.531;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2250,166,0 1 917492 rs28434575 C T 215.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.99;ReadPosRankSum=-0.618;SB=-1.160e+02;SOR=0.970;VQSLOD=9.13;culprit=QD GT:AD:DP:GQ:PL 0/1:16,11:27:99:244,0,409 1 935222 rs2298214 C A 230.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.477;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.897;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=1.222;SB=-6.100e+01;SOR=1.329;VQSLOD=6.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,10:22:99:259,0,349 1 948846 . T TA 1335.73 PASS AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.65;RPA=1,2;RU=A;SB=-2.771e+02;SOR=2.694;STR;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:93:1373,93,0 1 948870 rs4615788 C G 1219.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-2.740e+02;SOR=2.891;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1248,99,0 1 948921 rs15842 T C 2050.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-6.890e+02;SOR=1.802;VQSLOD=7.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2079,154,0 1 949235 rs2465124 G A 1346.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.49;SB=-4.840e+02;SOR=1.432;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1375,108,0 1 949608 rs1921 G A 1603.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.769;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=1.583;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=-2.895;SB=-9.470e+02;SOR=0.605;VQSLOD=8.65;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:43,61:104:99:1632,0,1218 1 949654 rs8997 A G 2866.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-1.788e+03;SOR=0.848;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:2895,208,0 1 949925 rs2799070 C T 693.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=-2.431e+02;SOR=1.931;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:54:722,54,0 1 957898 rs2799064 G T 745.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.976;HaplotypeScore=4.8738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.34;ReadPosRankSum=0.062;SB=-5.500e+01;SOR=1.609;VQSLOD=5.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,25:43:99:774,0,488 1 977203 rs3121552 G C 450.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.67;SB=-2.001e+02;SOR=1.179;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:479,36,0 1 977330 rs2799066 T C 1142.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-4.740e+02;SOR=1.609;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:84:1171,84,0 1 977570 rs2710876 G A 1434.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-2.001e+02;SOR=3.664;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1463,108,0 1 978603 rs35881187 CCT C 1093.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQ0=0;MQRankSum=2.354;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=0.264;SB=-3.680e+02;SOR=0.653;VQSLOD=2.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,26:72:99:1131,0,2314 1 978974 rs79016973 G A 2000.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.320;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=3.208;HaplotypeScore=3.5926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=-0.018;SB=-1.259e+03;SOR=0.624;VQSLOD=8.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,80:134:99:2029,0,1373 1 980460 rs3128097 G A 864.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-3.210e+02;SOR=1.942;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:66:893,66,0 1 981087 rs3128098 A G 3391.77 PASS AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.70;SB=-1.490e+03;SOR=1.265;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,107:107:99:3420,253,0 1 981931 rs2465128 A G 2543.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.9924;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-9.360e+02;SOR=1.923;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2572,202,0 1 981942 rs3813188 C A 1295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.179;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=2.836;HaplotypeScore=8.7692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=1.199;SB=-4.160e+02;SOR=1.101;VQSLOD=7.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,47:97:99:1324,0,1418 1 982941 rs3128102 T C 7536.77 PASS AC=2;AF=1.00;AN=2;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.15;SB=-4.809e+03;SOR=0.725;VQSLOD=4.24;culprit=DP GT:AD:DP:GQ:PL 1/1:0,250:250:99:7565,554,0 1 982994 rs10267 T C 7668.77 PASS AC=2;AF=1.00;AN=2;DB;DP=237;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2852;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.36;SB=-4.069e+03;SOR=1.053;VQSLOD=0.956;culprit=DP GT:AD:DP:GQ:PL 1/1:0,237:237:99:7697,566,0 1 985266 rs2275813 C T 871.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.052;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.160;SB=-3.580e+02;SOR=0.746;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:27,34:61:99:900,0,719 1 985449 rs2799067 G A 219.81 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.438;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.0441;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.869;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=-0.571;SB=-1.240e+02;SOR=0.027;VQSLOD=3.21;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:5,8:14:20:248,20,0 1 986443 rs2710887 C T 1231.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.41;SB=-7.480e+02;SOR=0.693;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:93:1260,93,0 1 986561 . G A 168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DP=15;Dels=0.00;ExcessHet=3.0103;FS=5.426;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.25;ReadPosRankSum=-0.056;SB=-2.103e+01;SOR=2.272;VQSLOD=4.51;culprit=FS GT:AD:DP:GQ:PL 0/1:9,6:15:99:197,0,276 1 987200 rs9803031 C T 2174.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9977;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.79;SB=-1.295e+03;SOR=0.776;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2203,163,0 1 988902 rs74223856 C A 523.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.449;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=-3.198;SB=-1.920e+02;SOR=0.458;VQSLOD=8.39;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:27,22:49:99:552,0,739 1 988932 rs2710871 G C 1060.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;SB=-3.560e+02;SOR=2.115;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:78:1089,78,0 1 990280 rs4275402 C T 140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.38;ReadPosRankSum=1.583;SB=-6.800e+01;SOR=0.646;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:9,6:15:99:169,0,218 1 990338 . C T 90.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.346;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-1.066;SB=-5.100e+01;SOR=1.022;VQSLOD=7.25;culprit=QD GT:AD:DP:GQ:PL 0/1:14,5:19:99:119,0,350 1 990380 . C T 301.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.76;ReadPosRankSum=0.938;SB=-2.000e+02;SOR=0.551;VQSLOD=8.06;culprit=FS GT:AD:DP:GQ:PL 0/1:5,13:18:99:330,0,120 1 990417 rs2465136 T C 190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=1.5983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=-1.378;SB=-1.450e+02;SOR=0.207;VQSLOD=10.13;culprit=SOR GT:AD:DP:GQ:PL 0/1:5,9:14:99:219,0,135 1 1007203 rs4633229 A G 1207.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4096;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.23;SB=-1.075e+02;SOR=3.675;VQSLOD=4.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:90:1236,90,0 1 1007222 rs71628928 G T 512.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.171;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.6972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.587;SB=-6.200e+01;SOR=0.527;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:20,21:41:99:541,0,590 1 1007432 rs4333796 G A 894.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.641;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=0.224;SB=-1.770e+02;SOR=0.818;VQSLOD=8.28;culprit=FS GT:AD:DP:GQ:PL 0/1:46,33:80:99:923,0,1345 1 1007433 rs185263154 C T 976.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.995;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=0.143;SB=-2.060e+02;SOR=0.730;VQSLOD=8.59;culprit=FS GT:AD:DP:GQ:PL 0/1:46,35:81:99:1005,0,1234 1 1018144 rs9442395 T C 390.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=1.173;SB=-9.500e+01;SOR=0.818;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 0/1:20,14:34:99:419,0,619 1 1019175 rs2298215 C G 1628.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.16;SB=-9.880e+02;SOR=0.846;VQSLOD=6.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1657,117,0 1 1019180 rs9442396 T C 704.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.649;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=3.833;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=0.187;SB=-4.930e+02;SOR=0.418;VQSLOD=8.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,31:55:99:733,0,685 1 1021346 rs10907177 A G 1032.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.585;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-0.297;SB=-6.750e+02;SOR=0.683;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:36,40:76:99:1061,0,873 1 1021415 rs3737728 A G 1475.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.79;SB=-3.960e+02;SOR=2.252;VQSLOD=7.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1504,111,0 1 1023145 rs3737727 G A 202.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.916;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.935;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=1.481;SB=-9.732e-01;SOR=1.751;VQSLOD=5.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,7:19:99:231,0,346 1 1025882 . A AG 915.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;DP=58;ExcessHet=3.0103;FS=2.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.96;RPA=4,5;RU=G;ReadPosRankSum=-0.162;SB=-1.060e+02;SOR=0.320;STR;VQSLOD=8.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,29:58:99:953,0,668 1 1026707 rs4074137 C A 2119.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.86;SB=-9.320e+02;SOR=1.451;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2148,157,0 1 1026801 rs4562563 T A 3052.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.84;SB=-1.793e+03;SOR=0.713;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,99:100:99:3081,232,0 1 1027545 rs147471490 C A 306.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.292;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=1.509;SB=-6.700e+01;SOR=0.793;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:11,12:23:99:335,0,310 1 1103471 rs12732261 C T 220.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.72;MQ0=0;MQRankSum=0.301;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=-1.630;SB=0.00;SOR=1.802;VQSLOD=2.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,8:11:81:249,0,81 1 1115210 rs11260546 G A 646.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.64;SB=-1.921e+02;SOR=1.739;VQSLOD=4.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:675,51,0 1 1115213 rs11260547 G T 602.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.40;SB=-1.543e+02;SOR=1.739;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:631,48,0 1 1117398 rs12097586 A G 914.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-1.065e+02;SOR=3.528;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:943,69,0 1 1118212 rs10907171 T C 2594.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-8.190e+02;SOR=1.952;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2623,202,0 1 1132938 rs2274791 G A 241.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.364;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.053;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.53;ReadPosRankSum=0.127;SB=-1.280e+02;SOR=1.093;VQSLOD=5.59;culprit=QD GT:AD:DP:GQ:PL 0/1:24,13:37:99:270,0,612 1 1132966 rs2274790 C A 165.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.119;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.515;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.35;ReadPosRankSum=-1.673;SB=-1.450e+02;SOR=0.368;VQSLOD=7.99;culprit=QD GT:AD:DP:GQ:PL 0/1:20,11:31:99:194,0,553 1 1133077 rs2274789 A G 279.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-0.643;SB=-1.570e+02;SOR=0.412;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:308,0,238 1 1139202 rs2298213 T C 648.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=8.834;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=-0.774;SB=-3.720e+02;SOR=0.440;VQSLOD=5.52;culprit=FS GT:AD:DP:GQ:PL 0/1:21,24:45:99:677,0,590 1 1141723 rs11466678 A G 251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.423;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=6.862;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=0.058;SB=-1.550e+02;SOR=0.401;VQSLOD=5.24;culprit=FS GT:AD:DP:GQ:PL 0/1:13,11:24:99:280,0,370 1 1141986 . C T 394.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.630;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.16;ReadPosRankSum=-0.354;SB=-8.800e+01;SOR=1.911;VQSLOD=4.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,14:30:99:423,0,381 1 1156131 rs2887286 T C 907.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.629;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=2.034;HaplotypeScore=3.3911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=0.235;SB=-3.700e+02;SOR=0.959;VQSLOD=7.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,35:70:99:936,0,898 1 1158631 rs6603781 A G 2595.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-1.125e+03;SOR=1.582;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2624,202,0 1 1159517 rs6702268 T C 683.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.19;SB=0.00;SOR=6.091;VQSLOD=7.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:712,60,0 1 1196863 rs6659787 T C 1374.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SB=-2.401e+02;SOR=3.258;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1403,102,0 1 1225641 rs2748384 C A 290.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.655;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.08;ReadPosRankSum=0.956;SB=-1.400e+02;SOR=0.591;VQSLOD=9.14;culprit=QD GT:AD:DP:GQ:PL 0/1:23,13:36:99:319,0,559 1 1225959 rs1570867 C G 1058.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=2.981;HaplotypeScore=2.9154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-0.179;SB=-6.450e+02;SOR=0.334;VQSLOD=9.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,42:84:99:1087,0,1061 1 1226221 rs2273275 A G 157.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.809;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=-1.554;SB=-6.400e+01;SOR=1.022;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:186,0,244 1 1226231 rs13306638 G A 233.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-1.177;SB=-9.800e+01;SOR=0.693;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:262,0,263 1 1226348 rs586965 C G 363.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-0.523;SB=-2.760e+02;SOR=0.804;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:16,17:33:99:392,0,413 1 1226757 rs6690013 G A 496.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.094;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=7.272;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=0.431;SB=-1.851e+02;SOR=0.093;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 0/1:16,19:35:99:525,0,462 1 1226889 rs609805 G A 1117.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.749;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-0.529;SB=-7.510e+02;SOR=0.646;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:39,46:85:99:1146,0,1063 1 1227249 rs621668 T C 553.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.420;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.590;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=1.235;SB=-5.300e+01;SOR=1.436;VQSLOD=6.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,18:41:99:582,0,657 1 1229144 rs7552099 G T 66.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.9412;MLEAC=1;MLEAF=0.500;MQ=58.02;MQ0=1;MQRankSum=0.574;POSITIVE_TRAIN_SITE;QD=2.78;ReadPosRankSum=0.933;SB=-4.764e+00;SOR=1.179;VQSLOD=2.65;culprit=QD GT:AD:DP:GQ:PL 0/1:20,4:24:95:95,0,449 1 1229680 rs2477781 G T 4096.77 PASS AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9156;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.31;SB=-2.237e+03;SOR=0.776;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,123:123:99:4125,313,0 1 1230689 rs1749952 C T 147.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.655;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=0.819;SB=0.00;SOR=0.892;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:4,5:10:99:176,0,116 1 1231507 rs619608 G A 1607.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=7.001;HaplotypeScore=5.7243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=-0.083;SB=-7.520e+02;SOR=1.139;VQSLOD=4.91;culprit=FS GT:AD:DP:GQ:PL 0/1:58,58:116:99:1636,0,1510 1 1233127 rs141337505 A G 83.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.46;MQ0=0;MQRankSum=-0.812;POSITIVE_TRAIN_SITE;QD=6.98;ReadPosRankSum=-0.078;SB=0.00;SOR=0.093;VQSLOD=3.26;culprit=QD GT:AD:DP:GQ:PL 0/1:7,5:12:99:112,0,246 1 1233131 . G T 99.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=57.46;MQ0=0;MQRankSum=-0.812;POSITIVE_TRAIN_SITE;QD=8.31;ReadPosRankSum=-0.078;SB=0.00;SOR=0.093;VQSLOD=3.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,5:12:99:128,0,225 1 1233132 rs188547671 C T 97.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=57.46;MQ0=0;MQRankSum=-0.812;POSITIVE_TRAIN_SITE;QD=8.15;ReadPosRankSum=0.074;SB=0.00;SOR=0.093;VQSLOD=3.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,5:12:99:126,0,256 1 1233941 rs1739855 T C 298.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.099;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=6.767;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=-1.676;SB=-9.732e-01;SOR=2.891;VQSLOD=5.74;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:327,0,259 1 1234762 rs143128930 AG A 602.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;DB;DP=30;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.09;RPA=5,4;RU=G;ReadPosRankSum=-0.086;SB=-2.350e+02;SOR=1.078;STR;VQSLOD=5.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,19:30:99:640,0,330 1 1235710 rs640712 T A 291.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.062;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=0.132;SB=-2.901e+01;SOR=0.693;VQSLOD=9.91;culprit=FS GT:AD:DP:GQ:PL 0/1:11,11:22:99:320,0,336 1 1239339 rs11260584 T G 220.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.981;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=4.548;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.20;ReadPosRankSum=1.253;SB=-2.203e+01;SOR=1.949;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 0/1:15,9:24:99:249,0,371 1 1242707 rs2274262 A G 501.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.330;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=0.616;SB=-9.500e+01;SOR=0.954;VQSLOD=7.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,18:43:99:530,0,775 1 1243112 . C A 158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.420;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.21;ReadPosRankSum=-0.422;SB=-1.380e+02;SOR=0.446;VQSLOD=8.54;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:187,0,124 1 1245368 rs11590283 G A 616.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.506;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.007;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=-0.102;SB=-1.420e+02;SOR=0.294;VQSLOD=9.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,22:35:99:645,0,386 1 1246004 rs2296474 A G 3503.77 PASS AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.1828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-2.148e+03;SOR=0.804;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,112:115:99:3532,256,0 1 1247494 rs12103 T C 135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.666;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.671;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.17;ReadPosRankSum=0.332;SB=-2.657e-01;SOR=2.110;VQSLOD=5.24;culprit=QD GT:AD:DP:GQ:PL 0/1:16,6:22:99:164,0,470 1 1249187 rs12142199 G A 3066.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.961;DB;DP=247;Dels=0.00;ExcessHet=3.0103;FS=2.972;HaplotypeScore=6.2579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-0.083;SB=-1.193e+03;SOR=0.937;VQSLOD=5.82;culprit=DP GT:AD:DP:GQ:PL 0/1:137,109:247:99:3095,0,3934 1 1254136 rs4970432 G A 275.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.467;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-0.066;SB=-3.300e+01;SOR=0.527;VQSLOD=10.34;culprit=FS GT:AD:DP:GQ:PL 0/1:12,10:22:99:304,0,390 1 1254255 rs62623580 G A 1093.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.147;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.832;HaplotypeScore=2.9276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-2.122;SB=-5.260e+02;SOR=0.846;VQSLOD=7.01;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:39,45:84:99:1122,0,974 1 1254436 rs1886773 A G 584.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.095;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-1.634;SB=-3.040e+02;SOR=0.484;VQSLOD=9.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,24:52:99:613,0,772 1 1254443 rs1886772 G A 555.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.349;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.427;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=-0.307;SB=-3.060e+02;SOR=0.376;VQSLOD=9.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,22:53:99:584,0,825 1 1254841 rs10907179 C G 1206.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.207;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=1.910;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-0.655;SB=-5.510e+02;SOR=0.946;VQSLOD=7.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,47:80:99:1235,0,767 1 1262591 rs2296472 C T 578.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=1.063;SB=-2.970e+02;SOR=0.732;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 0/1:27,25:52:99:607,0,682 1 1262966 rs307349 C T 738.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=0.720;SB=-3.330e+02;SOR=0.965;VQSLOD=7.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,28:63:99:767,0,931 1 1263144 rs307350 G A 341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.527;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.069;SB=-1.600e+02;SOR=1.329;VQSLOD=7.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,14:28:99:370,0,415 1 1268159 rs3813210 C T 1420.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.341;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=5.725;HaplotypeScore=4.7469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-0.114;SB=-5.650e+02;SOR=1.239;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 0/1:72,52:124:99:1449,0,1803 1 1268195 rs3813211 G A 1594.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.022;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=-0.113;SB=-8.660e+02;SOR=0.770;VQSLOD=8.38;culprit=FS GT:AD:DP:GQ:PL 0/1:73,62:135:99:1623,0,1923 1 1268847 rs307378 T G 2659.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=-1.675e+03;SOR=0.741;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2688,196,0 1 1269262 rs142902721 C T 656.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=-0.116;SB=-3.530e+02;SOR=0.826;VQSLOD=9.00;culprit=FS GT:AD:DP:GQ:PL 0/1:34,27:61:99:685,0,869 1 1269554 rs307377 T C 1086.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.96;SB=-4.780e+02;SOR=1.244;VQSLOD=5.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:84:1115,84,0 1 1269986 rs35424002 G A 331.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.667;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.70;ReadPosRankSum=-0.623;SB=-3.976e+01;SOR=1.061;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:3,11:14:83:360,0,83 1 1273116 rs307371 A G 305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.226;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.11;ReadPosRankSum=-0.229;SB=-1.880e+02;SOR=1.112;VQSLOD=6.66;culprit=QD GT:AD:DP:GQ:PL 0/1:28,15:43:99:334,0,605 1 1273278 rs307370 A G 350.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;SB=-2.061e+02;SOR=0.859;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:379,27,0 1 1275291 rs11582808 G A 231.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=6.043;HaplotypeScore=4.5313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=1.880;SB=-9.732e-01;SOR=2.584;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 0/1:5,15:20:99:260,0,113 1 1275329 rs11585534 T C 189.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=13.030;HaplotypeScore=4.5979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-1.140;SB=-1.905e+01;SOR=2.793;VQSLOD=3.33;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:218,0,253 1 1275330 rs11585063 A G 207.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.599;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=19.445;HaplotypeScore=3.5981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-1.201;SB=-6.829e-02;SOR=4.164;VQSLOD=0.607;culprit=FS GT:AD:DP:GQ:PL 0/1:9,7:17:99:236,0,256 1 1275716 rs112871502 T A 1122.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.289;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=4.778;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=0.492;SB=-4.290e+02;SOR=0.324;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:42,38:80:99:1151,0,1283 1 1275956 rs111883533 C T 321.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.196;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.622;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.98;ReadPosRankSum=1.560;SB=-6.900e+01;SOR=1.781;VQSLOD=5.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,11:14:50:350,0,50 1 1276930 rs75244934 GCA G 760.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;DB;DP=48;ExcessHet=3.0103;FS=5.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.19;RPA=4,3;RU=CA;ReadPosRankSum=-0.549;SB=-6.800e+01;SOR=1.920;STR;VQSLOD=5.79;culprit=FS GT:AD:DP:GQ:PL 0/1:27,20:48:99:798,0,1164 1 1276973 rs36106731 G GACAC 5260.73 PASS AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;RPA=2,4;RU=AC;SB=-1.703e+03;SOR=1.704;STR;VQSLOD=3.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:78:99:5298,229,0 1 1277533 rs307362 T C 3383.77 PASS AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-1.336e+03;SOR=1.856;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,111:111:99:3412,265,0 1 1277649 rs146525333 G T 575.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.609;HaplotypeScore=1.9982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=1.123;SB=-1.980e+02;SOR=1.207;VQSLOD=5.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,20:31:99:604,0,304 1 1278237 rs307361 T C 1991.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-5.560e+02;SOR=2.636;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2020,156,0 1 1288471 rs3766183 C T 101.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=-0.240;SB=-4.176e+01;SOR=0.093;VQSLOD=9.14;culprit=QD GT:AD:DP:GQ:PL 0/1:7,5:12:99:130,0,254 1 1288583 rs3845295 C G 626.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.618;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=2.481;HaplotypeScore=1.8188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=0.814;SB=-3.480e+02;SOR=0.363;VQSLOD=9.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,29:58:99:655,0,806 1 1288823 . A G 522.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.780;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.94;ReadPosRankSum=0.826;SB=-2.490e+02;SOR=0.148;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 0/1:17,18:35:99:551,0,540 1 1289911 rs4970365 G A 435.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.654;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=1.671;SB=-3.300e+01;SOR=1.292;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:8,13:21:99:464,0,224 1 1293764 rs34841888 G C 1738.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.332;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.392;SB=-7.600e+02;SOR=0.808;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 0/1:71,68:139:99:1767,0,1755 1 1296691 rs2765025 C G 2887.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;SB=-1.364e+03;SOR=1.514;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:2916,208,0 1 1296818 rs2765024 C G 484.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=0.00;SOR=5.283;VQSLOD=8.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:513,39,0 1 1309885 rs35745967 A G 184.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.409;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=5.219;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-1.410;SB=-1.300e+02;SOR=0.105;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:213,0,174 1 1310074 rs2765035 C G 1408.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.63;SB=-6.270e+02;SOR=1.464;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1437,105,0 1 1323078 rs12729599 A G 785.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.865;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.501;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.45;ReadPosRankSum=1.138;SB=-2.520e+02;SOR=1.287;VQSLOD=5.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,24:35:99:814,0,264 1 1323143 rs35654872 CCT C 1137.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.491;DB;DP=46;ExcessHet=3.0103;FS=9.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.28;ReadPosRankSum=-0.613;SB=-5.290e+02;SOR=0.106;VQSLOD=4.58;culprit=FS GT:AD:DP:GQ:PL 0/1:22,23:46:99:1175,0,1057 1 1323945 rs111530797 GTC G 580.73 PASS AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.70;RPA=9,8;RU=TC;SB=-3.050e+02;SOR=0.693;STR;VQSLOD=4.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:20:42:618,42,0 1 1330726 rs1240746 A G 434.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.542;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.210;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=-2.114;SB=-1.930e+02;SOR=0.951;VQSLOD=6.45;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:25,20:45:99:463,0,626 1 1333598 rs35242196 C A 1970.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.653;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=0.316;SB=-9.520e+02;SOR=0.627;VQSLOD=8.07;culprit=DP GT:AD:DP:GQ:PL 0/1:77,79:156:99:1999,0,2048 1 1335790 rs1240708 A G 533.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.461;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.826;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=0.673;SB=-2.010e+02;SOR=1.222;VQSLOD=7.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,18:38:99:562,0,596 1 1336136 rs34091023 GGA G 1467.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;DB;DP=86;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=60.13;MQ0=0;MQRankSum=1.188;POSITIVE_TRAIN_SITE;QD=18.35;ReadPosRankSum=-0.477;SB=-1.540e+02;SOR=1.298;VQSLOD=0.319;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,34:86:99:1505,0,2230 1 1337334 rs1171 G T 457.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.992;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.81;ReadPosRankSum=-0.512;SB=0.00;SOR=1.329;VQSLOD=8.54;culprit=FS GT:AD:DP:GQ:PL 0/1:8,14:22:99:486,0,256 1 1342612 rs2275915 G C 990.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.678;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=2.936;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=-1.666;SB=-3.490e+02;SOR=1.022;VQSLOD=6.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,38:91:99:1019,0,1414 1 1342673 . T C 418.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.134;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.21;ReadPosRankSum=2.011;SB=-9.300e+01;SOR=0.693;VQSLOD=7.28;culprit=QD GT:AD:DP:GQ:PL 0/1:33,18:52:99:447,0,936 1 1374834 rs1892289 A G 455.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.763;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.79;ReadPosRankSum=-1.048;SB=-9.201e+01;SOR=0.990;VQSLOD=8.91;culprit=FS GT:AD:DP:GQ:PL 0/1:5,15:20:99:484,0,145 1 1387213 rs3899060 G A 396.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.324;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.54;MQ0=0;MQRankSum=-2.880;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=0.329;SB=0.00;SOR=0.941;VQSLOD=3.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,14:25:99:425,0,330 1 1387318 . C T 1700.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.268;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=1.987;QD=14.92;ReadPosRankSum=-0.111;SB=-5.600e+02;SOR=0.626;VQSLOD=0.940;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,64:114:99:1729,0,1313 1 1387667 rs1781144 C G 2875.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.05;SB=-1.683e+03;SOR=0.716;VQSLOD=5.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2904,214,0 1 1389695 rs35096659 C T 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.308;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.93;MQ0=0;MQRankSum=0.483;QD=12.70;ReadPosRankSum=-0.249;SB=-1.766e+00;SOR=1.329;VQSLOD=2.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,9:21:99:295,0,368 1 1390997 rs1781148 T G 463.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.167;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=1.293;SB=-3.310e+02;SOR=0.665;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:11,19:30:99:492,0,296 1 1392726 rs77814176 G A 363.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.004;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.269;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=1.770;SB=-3.100e+01;SOR=1.421;VQSLOD=6.39;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:12,13:25:99:392,0,343 1 1394384 rs1751469 T C 207.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.076;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.20;MQ0=0;MQRankSum=-1.408;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=0.389;SB=0.00;SOR=1.022;VQSLOD=3.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,7:12:99:236,0,150 1 1394663 rs76548509 AC A 867.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;DB;DP=52;ExcessHet=3.0103;FS=4.936;MLEAC=1;MLEAF=0.500;MQ=46.37;MQ0=0;MQRankSum=-1.422;POSITIVE_TRAIN_SITE;QD=17.71;RPA=3,2;RU=C;ReadPosRankSum=0.750;SB=-1.370e+02;SOR=1.574;STR;VQSLOD=0.076;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,25:51:99:905,0,847 1 1394737 rs75201061 C A 227.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.236;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.56;MQ0=0;MQRankSum=-2.186;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=0.360;SB=-4.176e+01;SOR=0.275;VQSLOD=3.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,9:16:99:256,0,228 1 1395179 rs2489823 T G 133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.15;MQ0=0;MQRankSum=-2.260;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.100;SB=-3.500e+01;SOR=0.693;VQSLOD=3.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,5:10:99:162,0,130 1 1395449 . AT A 62.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.23;RPA=19,18;RU=T;ReadPosRankSum=1.443;SB=-2.607e+01;SOR=0.495;STR;VQSLOD=7.34;culprit=QD GT:AD:DP:GQ:PL 0/1:5,7:15:48:100,0,48 1 1396238 rs72896283 G T 2053.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=0.598;HaplotypeScore=1.8910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-0.806;SB=-1.060e+03;SOR=0.768;VQSLOD=8.14;culprit=DP GT:AD:DP:GQ:PL 0/1:78,79:157:99:2082,0,2000 1 1396338 rs76815729 G A 828.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.387;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.424;HaplotypeScore=2.3913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=0.867;SB=-2.090e+02;SOR=1.148;VQSLOD=7.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,33:64:99:857,0,842 1 1403634 rs75395365 T A 151.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.518;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.20;MQ0=0;MQRankSum=-2.806;POSITIVE_TRAIN_SITE;QD=9.49;ReadPosRankSum=1.847;SB=-1.765e+00;SOR=1.085;VQSLOD=2.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,6:16:99:180,0,298 1 1403972 . C CG 1584.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DP=94;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=55.45;MQ0=0;MQRankSum=0.222;POSITIVE_TRAIN_SITE;QD=17.23;RPA=2,3;RU=G;ReadPosRankSum=-0.383;SB=-7.050e+02;SOR=0.536;STR;VQSLOD=0.335;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,46:94:99:1622,0,1654 1 1407538 rs78689788 C G 68.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.91;MQ0=0;MQRankSum=-1.020;QD=5.29;ReadPosRankSum=0.895;SB=-1.765e+00;SOR=0.804;VQSLOD=1.95;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:97:97,0,285 1 1413811 rs150450339 G T 120.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9322;MLEAC=1;MLEAF=0.500;MQ=59.51;MQ0=0;MQRankSum=0.862;POSITIVE_TRAIN_SITE;QD=7.10;ReadPosRankSum=-0.705;SB=-3.000e+01;SOR=0.593;VQSLOD=3.03;culprit=QD GT:AD:DP:GQ:PL 0/1:11,6:17:99:149,0,318 1 1416370 rs1153096 T C 472.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.590;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.15;MQ0=1;MQRankSum=-3.874;QD=12.78;ReadPosRankSum=0.301;SB=-2.302e+01;SOR=0.818;VQSLOD=1.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,20:37:99:501,0,494 1 1417696 rs819970 C G 141.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.37;MQ0=3;MQRankSum=-4.943;POSITIVE_TRAIN_SITE;QD=4.73;ReadPosRankSum=1.159;SB=-7.790e+00;SOR=0.859;VQSLOD=1.99;culprit=QD GT:AD:DP:GQ:PL 0/1:18,12:30:99:170,0,591 1 1421531 rs819976 C A 1521.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.666;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=4.697;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=2.189;SB=-9.790e+02;SOR=0.378;VQSLOD=8.96;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:50,60:110:99:1550,0,1355 1 1421734 rs77085485 G C 410.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.749;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.298;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=-1.001;SB=-1.360e+02;SOR=1.140;VQSLOD=6.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,14:42:99:439,0,880 1 1421776 rs79881454 C G 350.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.414;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=8.043;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=0.318;SB=-4.200e+01;SOR=2.194;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 0/1:27,13:40:99:379,0,920 1 1423267 rs819977 A G 356.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.819;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.154;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.93;ReadPosRankSum=-0.714;SB=-2.200e+02;SOR=0.895;VQSLOD=6.25;culprit=QD GT:AD:DP:GQ:PL 0/1:28,17:45:99:385,0,805 1 1425147 rs61744101 T C 151.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.747;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.719;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.23;ReadPosRankSum=0.391;SB=-1.230e+02;SOR=0.368;VQSLOD=8.53;culprit=QD GT:AD:DP:GQ:PL 0/1:12,9:21:99:180,0,301 1 1425296 rs41285828 C T 35.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.58;ReadPosRankSum=-0.561;SB=-2.601e+01;SOR=0.446;VQSLOD=8.98;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:64:64,0,191 1 1425502 rs2242395 A G 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=0.603;SB=-1.766e+00;SOR=1.371;VQSLOD=9.08;culprit=FS GT:AD:DP:GQ:PL 0/1:14,11:25:99:309,0,415 1 1425700 rs819980 T C 2226.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;DB;DP=183;Dels=0.00;ExcessHet=3.0103;FS=1.153;HaplotypeScore=8.1373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=-0.951;SB=-1.155e+03;SOR=0.820;VQSLOD=7.75;culprit=DP GT:AD:DP:GQ:PL 0/1:95,88:183:99:2255,0,2414 1 1430737 rs28394081 G A 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=1.434;SB=0.00;SOR=0.551;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:166,0,209 1 1451380 rs9439458 T C 1675.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.472;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=1.584;HaplotypeScore=3.9537;MLEAC=1;MLEAF=0.500;MQ=57.66;MQ0=0;MQRankSum=-1.886;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=-1.045;SB=-8.630e+02;SOR=0.526;VQSLOD=0.680;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,66:114:99:1704,0,1198 1 1454272 rs10159059 T A 1372.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.961;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.6881;MLEAC=1;MLEAF=0.500;MQ=57.37;MQ0=0;MQRankSum=0.557;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=-0.534;SB=-8.890e+02;SOR=0.658;VQSLOD=0.247;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:83,60:144:99:1401,0,1953 1 1458402 rs3813215 A G 111.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=46.26;MQ0=0;MQRankSum=-3.578;POSITIVE_TRAIN_SITE;QD=5.32;ReadPosRankSum=-0.142;SB=-4.200e+01;SOR=0.399;VQSLOD=2.88;culprit=QD GT:AD:DP:GQ:PL 0/1:12,9:21:99:140,0,302 1 1458832 . G C 284.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.690;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=59.91;MQ0=0;MQRankSum=0.819;QD=8.63;ReadPosRankSum=2.154;SB=-1.640e+02;SOR=0.914;VQSLOD=1.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,12:33:99:313,0,519 1 1458954 rs3737714 C T 534.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7161;MLEAC=1;MLEAF=0.500;MQ=59.91;MQ0=0;MQRankSum=-0.797;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=-1.915;SB=-3.140e+02;SOR=0.549;VQSLOD=3.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,19:33:99:563,0,399 1 1460793 . CT C 133.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.69;RPA=19,18;RU=T;ReadPosRankSum=-0.151;SB=-3.500e+01;SOR=1.179;STR;VQSLOD=7.38;culprit=QD GT:AD:DP:GQ:PL 0/1:10,10:28:99:171,0,169 1 1462766 rs9439462 C T 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.991;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=11.290;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.85;ReadPosRankSum=1.337;SB=-1.150e+02;SOR=0.407;VQSLOD=5.07;culprit=QD GT:AD:DP:GQ:PL 0/1:13,9:22:99:201,0,397 1 1463318 rs11260608 C A 323.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=-1.255;SB=0.00;SOR=0.892;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 0/1:9,11:20:99:352,0,254 1 1469221 rs6698376 T C 51.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.947;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.27;MQ0=2;MQRankSum=-1.706;QD=3.24;ReadPosRankSum=-0.701;SB=-1.765e+00;SOR=0.425;VQSLOD=1.94;culprit=QD GT:AD:DP:GQ:PL 0/1:12,4:16:80:80,0,335 1 1469598 rs9439464 C G 125.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.042;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=57.47;MQ0=0;MQRankSum=-4.770;POSITIVE_TRAIN_SITE;QD=2.99;ReadPosRankSum=-1.637;SB=-4.800e+01;SOR=0.876;VQSLOD=1.88;culprit=QD GT:AD:DP:GQ:PL 0/1:35,7:42:99:154,0,996 1 1469599 rs3128343 G C 117.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=57.41;MQ0=0;MQRankSum=-4.706;QD=2.87;ReadPosRankSum=-1.820;SB=-5.000e+01;SOR=0.811;VQSLOD=0.664;culprit=QD GT:AD:DP:GQ:PL 0/1:34,7:41:99:146,0,964 1 1470892 rs1106226 G A 806.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.305;DB;DP=56;Dels=0.02;ExcessHet=3.0103;FS=3.749;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=-0.749;SB=-4.390e+02;SOR=0.590;VQSLOD=5.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,28:55:99:835,0,732 1 1475801 rs190482382 C T 109.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.625;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=0.175;SB=-2.901e+01;SOR=1.179;VQSLOD=9.34;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:138,0,145 1 1477244 rs7290 T C 1034.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-2.221e+02;SOR=2.694;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:81:1063,81,0 1 1477323 rs3831113 GCA G 1273.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.46;RPA=2,1;RU=CA;ReadPosRankSum=0.348;SB=-4.200e+02;SOR=0.765;STR;VQSLOD=8.27;culprit=FS GT:AD:DP:GQ:PL 0/1:41,28:71:99:1311,0,2020 1 1479186 rs145399149 C A 378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.831;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9111;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=1;MQRankSum=0.033;POSITIVE_TRAIN_SITE;QD=8.06;ReadPosRankSum=0.612;SB=-7.900e+01;SOR=0.673;VQSLOD=3.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,17:47:99:407,0,904 1 1479333 rs7533 A G 3121.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.45;SB=-1.679e+03;SOR=0.987;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3150,232,0 1 1480226 rs116703397 C T 585.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.61;ReadPosRankSum=0.940;SB=-4.240e+02;SOR=0.625;VQSLOD=8.43;culprit=QD GT:AD:DP:GQ:PL 0/1:41,27:68:99:614,0,1067 1 1509825 rs6666293 A G 1731.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.86;SB=-6.270e+02;SOR=2.001;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1760,138,0 1 1510035 rs150737039 GGC G 1090.73 PASS AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=0.00;SOR=6.184;VQSLOD=8.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:24:63:1128,63,0 1 1510724 rs77661767 C T 805.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.429;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=0.584;SB=-2.980e+02;SOR=0.549;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:23,30:53:99:834,0,636 1 1510801 rs7519837 C T 574.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=-8.097e+01;SOR=3.500;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:48:603,48,0 1 1560103 rs28635343 C T 1921.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-8.660e+02;SOR=1.437;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:1950,144,0 1 1562437 rs28510084 C G 1668.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-7.220e+02;SOR=1.157;VQSLOD=5.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1697,129,0 1 1562536 rs11544452 G A 2171.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.94;SB=-7.850e+02;SOR=1.644;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2200,166,0 1 1562895 rs12735861 C T 451.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.75;SB=-2.391e+02;SOR=0.836;VQSLOD=5.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:480,36,0 1 1566065 . A AG 330.73 PASS AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.13;MQ0=0;QD=27.56;RPA=2,3;RU=G;SB=-5.848e+00;SOR=3.611;STR;VQSLOD=4.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:19:34:368,34,0 1 1566068 rs28730454 A G 632.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.3432;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.56;SB=-4.076e+01;SOR=4.294;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:661,51,0 1 1574076 rs9442413 G A 416.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.084;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.78;MQ0=0;MQRankSum=0.529;POSITIVE_TRAIN_SITE;QD=7.19;ReadPosRankSum=0.992;SB=-2.203e+01;SOR=0.954;VQSLOD=2.72;culprit=QD GT:AD:DP:GQ:PL 0/1:42,16:58:99:445,0,1278 1 1580784 . G A 238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.663;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8318;MLEAC=1;MLEAF=0.500;MQ=40.83;MQ0=1;MQRankSum=-0.041;QD=2.36;ReadPosRankSum=1.364;SB=-1.709e+01;SOR=0.281;VQSLOD=0.321;culprit=QD GT:AD:DP:GQ:PL 0/1:83,18:101:99:267,0,2653 1 1581958 rs200481124 T C 360.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.798;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8316;MLEAC=1;MLEAF=0.500;MQ=44.80;MQ0=7;MQRankSum=-4.148;QD=3.64;ReadPosRankSum=-0.615;SB=-1.150e+02;SOR=0.698;VQSLOD=0.117;culprit=QD GT:AD:DP:GQ:PL 0/1:76,23:99:99:389,0,1940 1 1582106 rs79942991 T C 5751.77 PASS AC=2;AF=1.00;AN=2;DB;DP=191;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.0759;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=8;QD=30.11;SB=-1.388e+03;SOR=1.929;VQSLOD=4.15;culprit=DP GT:AD:DP:GQ:PL 1/1:0,191:191:99:5780,427,0 1 1582794 rs4648754 C A 679.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.35;MQ0=2;POSITIVE_TRAIN_SITE;QD=29.56;SB=-1.075e+02;SOR=3.160;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:708,57,0 1 1583669 rs142625832 C CT 1611.73 PASS AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=26.54;SB=-3.021e+02;SOR=2.833;VQSLOD=4.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:99:1649,99,0 1 1585597 rs7531938 A G 760.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.17;SB=-4.430e+02;SOR=0.997;VQSLOD=4.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:57:789,57,0 1 1585642 rs3936009 G T 739.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.51;SB=-4.380e+02;SOR=1.071;VQSLOD=5.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:57:768,57,0 1 1586752 rs11486023 T C 3293.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-1.079e+03;SOR=1.902;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:3322,241,0 1 1588670 . G A 143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.227;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.00;MQ0=0;MQRankSum=-2.346;QD=6.53;ReadPosRankSum=-1.537;SB=-5.500e+01;SOR=0.473;VQSLOD=1.76;culprit=QD GT:AD:DP:GQ:PL 0/1:14,8:22:99:172,0,398 1 1588717 rs61774959 G A 113.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.085;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.56;MQ0=0;MQRankSum=-0.842;QD=2.71;ReadPosRankSum=1.457;SB=-7.700e+01;SOR=0.727;VQSLOD=1.47;culprit=QD GT:AD:DP:GQ:PL 0/1:33,9:42:99:142,0,874 1 1588737 rs61776760 C T 110.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.771;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.38;MQ0=0;MQRankSum=-1.024;QD=2.26;ReadPosRankSum=1.613;SB=-2.103e+01;SOR=0.789;VQSLOD=1.31;culprit=QD GT:AD:DP:GQ:PL 0/1:39,10:49:99:139,0,962 1 1588743 rs61776761 A T 102.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.049;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=-1.250;QD=2.06;ReadPosRankSum=1.945;SB=-5.000e+01;SOR=0.643;VQSLOD=1.29;culprit=QD GT:AD:DP:GQ:PL 0/1:41,9:50:99:131,0,1003 1 1595867 rs4443835 C A 2269.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=1;POSITIVE_TRAIN_SITE;QD=30.67;SB=-1.133e+03;SOR=1.179;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2298,175,0 1 1602787 rs4639697 G T 1025.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=-3.070e+02;SOR=1.981;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:78:1054,78,0 1 1635565 rs11488591 C T 387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.783;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.1675;MLEAC=1;MLEAF=0.500;MQ=59.98;MQ0=0;MQRankSum=0.760;POSITIVE_TRAIN_SITE;QD=3.62;ReadPosRankSum=0.899;SB=-1.780e+02;SOR=0.680;VQSLOD=0.752;culprit=QD GT:AD:DP:GQ:PL 0/1:84,23:107:99:416,0,2236 1 1639440 . A T 75.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.75;MQ0=1;MQRankSum=-2.698;QD=3.61;ReadPosRankSum=-1.488;SB=0.00;SOR=0.132;VQSLOD=1.31;culprit=QD GT:AD:DP:GQ:PL 0/1:16,5:21:99:104,0,505 1 1639801 rs74378830 T C 122.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=50.05;MQ0=0;MQRankSum=-3.588;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=-0.882;SB=0.00;SOR=0.473;VQSLOD=2.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,6:14:99:151,0,275 1 1644836 rs2179382 G A 540.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.961;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8270;MLEAC=1;MLEAF=0.500;MQ=54.16;MQ0=1;MQRankSum=-0.358;QD=6.93;ReadPosRankSum=0.055;SB=-2.620e+02;SOR=0.608;VQSLOD=1.21;culprit=QD GT:AD:DP:GQ:PL 0/1:54,24:78:99:569,0,1499 1 1644908 rs2179383 C T 895.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=5.029;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=44.35;MQ0=2;MQRankSum=-5.172;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=0.013;SB=-2.990e+02;SOR=0.627;VQSLOD=0.174;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,36:48:99:924,0,285 1 1646371 rs115815404 G T 191.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=55.03;MQ0=0;MQRankSum=-0.141;POSITIVE_TRAIN_SITE;QD=4.57;ReadPosRankSum=-0.118;SB=-5.300e+01;SOR=0.616;VQSLOD=3.03;culprit=QD GT:AD:DP:GQ:PL 0/1:32,10:42:99:220,0,906 1 1646450 rs141565668 G A 355.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.310;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.28;MQ0=0;MQRankSum=-1.750;QD=19.76;ReadPosRankSum=0.099;SB=-3.300e+01;SOR=1.270;VQSLOD=1.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,13:18:99:384,0,152 1 1646657 rs760926 T C 168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.37;MQ0=15;MQRankSum=-5.816;POSITIVE_TRAIN_SITE;QD=3.31;ReadPosRankSum=0.265;SB=-1.041e+01;SOR=0.804;VQSLOD=1.46;culprit=QD GT:AD:DP:GQ:PL 0/1:26,25:51:99:197,0,750 1 1646980 rs61776853 A C 367.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SB=0.00;SOR=4.977;VQSLOD=8.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:396,33,0 1 1646985 rs61776854 C T 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.21;MQ0=0;MQRankSum=-0.308;QD=17.88;ReadPosRankSum=-0.105;SB=0.00;SOR=1.609;VQSLOD=2.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,7:10:83:207,0,83 1 1647686 rs909823 A C 284.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.109;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=-0.524;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=0.803;SB=0.00;SOR=1.112;VQSLOD=4.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,9:15:99:313,0,189 1 1647722 rs114460890 G T 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.524;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.91;ReadPosRankSum=0.266;SB=0.00;SOR=0.112;VQSLOD=7.95;culprit=QD GT:AD:DP:GQ:PL 0/1:28,9:37:99:247,0,1036 1 1647725 rs368680882 G A 194.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.225;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.668;SB=0.00;SOR=0.099;VQSLOD=7.77;culprit=QD GT:AD:DP:GQ:PL 0/1:30,9:39:99:223,0,1101 1 1647726 rs80025558 T G 228.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.846;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.87;ReadPosRankSum=0.685;SB=0.00;SOR=0.099;VQSLOD=7.89;culprit=QD GT:AD:DP:GQ:PL 0/1:30,9:39:99:257,0,996 1 1647729 . C T 207.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.236;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.19;ReadPosRankSum=0.827;SB=-1.765e+00;SOR=0.348;VQSLOD=7.14;culprit=QD GT:AD:DP:GQ:PL 0/1:31,9:40:99:236,0,1098 1 1647730 . A G 220.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.838;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.26;ReadPosRankSum=1.059;SB=-9.732e-01;SOR=0.631;VQSLOD=7.15;culprit=QD GT:AD:DP:GQ:PL 0/1:33,9:42:99:249,0,1114 1 1647745 rs72634830 G A 312.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.712;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.755;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.59;ReadPosRankSum=0.509;SB=-9.800e+01;SOR=0.245;VQSLOD=6.11;culprit=QD GT:AD:DP:GQ:PL 0/1:41,15:56:99:341,0,1233 1 1647753 rs74045984 C T 332.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.144;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=1.542;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.20;ReadPosRankSum=1.373;SB=-8.300e+01;SOR=0.368;VQSLOD=6.66;culprit=QD GT:AD:DP:GQ:PL 0/1:48,16:64:99:361,0,1573 1 1647778 rs72901773 C G 507.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.101;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=5.435;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.40;ReadPosRankSum=-0.223;SB=-2.950e+02;SOR=0.238;VQSLOD=7.64;culprit=QD GT:AD:DP:GQ:PL 0/1:66,28:94:99:536,0,2023 1 1647814 rs72901775 T C 865.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.026;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.18;ReadPosRankSum=-0.169;SB=-4.820e+02;SOR=0.628;VQSLOD=6.83;culprit=QD GT:AD:DP:GQ:PL 0/1:99,41:140:99:894,0,2636 1 1647871 rs72909014 T C 1203.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.006;DB;DP=177;Dels=0.00;ExcessHet=3.0103;FS=4.888;HaplotypeScore=1.9106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.80;ReadPosRankSum=0.107;SB=-5.270e+02;SOR=1.056;VQSLOD=4.72;culprit=QD GT:AD:DP:GQ:PL 0/1:124,53:177:99:1232,0,3249 1 1647893 . C CTTTCTT 3451.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;DP=172;ExcessHet=3.0103;FS=3.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.85;RPA=1,2;RU=TTTCTT;ReadPosRankSum=-1.743;SB=-1.698e+03;SOR=0.461;STR;VQSLOD=4.32;culprit=DP GT:AD:DP:GQ:PL 0/1:111,48:172:99:3489,0,8392 1 1647928 rs1883424 A G 1260.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.935;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=5.539;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.46;ReadPosRankSum=-0.522;SB=-4.460e+02;SOR=1.279;VQSLOD=5.21;culprit=QD GT:AD:DP:GQ:PL 0/1:97,52:149:99:1289,0,2342 1 1647968 rs34259364 C CAT 1573.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.307;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQ0=0;MQRankSum=-1.381;QD=16.57;ReadPosRankSum=1.603;SB=-3.920e+02;SOR=0.600;VQSLOD=1.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,32:95:99:1611,0,3268 1 1647983 rs74429813 T A 697.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.572;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=-1.345;QD=9.30;ReadPosRankSum=1.832;SB=-1.010e+02;SOR=0.815;VQSLOD=1.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,26:75:99:726,0,1458 1 1648002 rs77107184 C T 548.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.690;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-1.735;QD=10.35;ReadPosRankSum=-0.782;SB=-2.701e+01;SOR=0.709;VQSLOD=1.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,21:53:99:577,0,1077 1 1648018 rs79409185 C T 458.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.024;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9979;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=-1.754;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-1.685;SB=0.00;SOR=0.356;VQSLOD=3.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,16:41:99:487,0,782 1 1648027 rs61776857 T C 947.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.387;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9979;MLEAC=1;MLEAF=0.500;MQ=59.04;MQ0=0;MQRankSum=-0.819;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.62;ReadPosRankSum=-0.369;SB=0.00;SOR=2.774;VQSLOD=0.341;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,30:37:99:976,0,167 1 1648053 . A G 67.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.29;MQ0=0;MQRankSum=-3.680;QD=3.23;ReadPosRankSum=0.583;SB=0.00;SOR=0.074;VQSLOD=1.32;culprit=QD GT:AD:DP:GQ:PL 0/1:17,4:21:96:96,0,606 1 1648054 . A G 72.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.317;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.29;MQ0=0;MQRankSum=-3.680;QD=3.47;ReadPosRankSum=0.672;SB=0.00;SOR=0.074;VQSLOD=1.41;culprit=QD GT:AD:DP:GQ:PL 0/1:17,4:21:99:101,0,573 1 1648058 rs77653063 G T 64.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.397;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.29;MQ0=0;MQRankSum=-3.680;QD=3.08;ReadPosRankSum=0.762;SB=0.00;SOR=0.074;VQSLOD=1.23;culprit=QD GT:AD:DP:GQ:PL 0/1:17,4:21:93:93,0,623 1 1650807 rs1137005 T C 1160.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.497;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.581;HaplotypeScore=16.8870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.32;ReadPosRankSum=0.264;SB=-4.360e+02;SOR=1.228;VQSLOD=6.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,41:67:99:1189,0,599 1 1650845 rs1059831 G A 1146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=3.022;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=-0.786;SB=-6.340e+02;SOR=1.067;VQSLOD=7.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,48:80:99:1175,0,678 1 1651047 . C T 80.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.2257;MLEAC=1;MLEAF=0.500;MQ=59.24;MQ0=0;MQRankSum=0.000;QD=4.04;ReadPosRankSum=0.899;SB=-5.150e-01;SOR=1.112;VQSLOD=6.89;culprit=QD GT:AD:DP:GQ:PL 0/1:16,4:22:99:109,0,361 1 1651063 . T C 88.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.743;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.6899;MLEAC=1;MLEAF=0.500;MQ=58.12;MQ0=0;MQRankSum=0.877;QD=4.93;ReadPosRankSum=-1.010;SB=-5.150e-01;SOR=1.329;VQSLOD=1.39;culprit=QD GT:AD:DP:GQ:PL 0/1:14,4:18:99:117,0,407 1 1653303 rs35548050 T C 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.56;MQ0=0;MQRankSum=-0.524;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=0.712;SB=0.00;SOR=1.085;VQSLOD=3.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,6:10:99:171,0,132 1 1657021 rs9439499 T C 621.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.13;MQ0=0;QD=32.72;SB=-4.276e+01;SOR=4.514;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:650,57,0 1 1663605 rs66653340 A G 260.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.73;ReadPosRankSum=0.080;SB=0.00;SOR=1.981;VQSLOD=8.56;culprit=FS GT:AD:DP:GQ:PL 0/1:3,9:12:83:289,0,83 1 1663851 rs2294486 G C 4060.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;DB;DP=168;Dels=0.00;ExcessHet=3.0103;FS=2.639;HaplotypeScore=2.1188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.17;ReadPosRankSum=-0.330;SB=-2.453e+03;SOR=0.450;VQSLOD=3.80;culprit=DP GT:AD:DP:GQ:PL 0/1:29,139:168:99:4089,0,679 1 1663861 rs2294487 G A 3932.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.051;DB;DP=164;Dels=0.00;ExcessHet=3.0103;FS=7.576;HaplotypeScore=2.9950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.13;ReadPosRankSum=1.755;SB=-2.207e+03;SOR=0.390;VQSLOD=3.77;culprit=FS GT:AD:DP:GQ:PL 0/1:32,131:164:99:3961,0,689 1 1664019 rs2294488 T C 2598.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.731;HaplotypeScore=1.9990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.56;ReadPosRankSum=0.002;SB=-1.328e+03;SOR=0.834;VQSLOD=7.75;culprit=DP GT:AD:DP:GQ:PL 0/1:39,101:140:99:2627,0,869 1 1664124 rs2294489 T C 1387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.919;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=4.399;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.71;ReadPosRankSum=-2.016;SB=-5.520e+02;SOR=1.487;VQSLOD=5.56;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:16,51:67:99:1416,0,345 1 1666447 rs35516110 G GGTTT 1924.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.032;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQ0=0;MQRankSum=-1.261;QD=26.21;ReadPosRankSum=-0.189;SB=-7.476e+01;SOR=1.132;VQSLOD=2.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,29:39:99:1962,0,488 1 1669748 rs115554296 A G 1263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.682;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.52;MQ0=0;MQRankSum=-6.734;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=-0.185;SB=-4.960e+02;SOR=0.769;VQSLOD=0.652;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,47:67:99:1292,0,477 1 1684169 rs7796 C G 270.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.08;ReadPosRankSum=-0.728;SB=0.00;SOR=2.303;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 0/1:2,8:10:51:299,0,51 1 1684347 rs139135464 C CCCT 818.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;DB;DP=62;ExcessHet=3.0103;FS=2.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.45;RPA=9,10;RU=CCT;ReadPosRankSum=0.557;SB=-3.890e+02;SOR=0.615;STR;VQSLOD=5.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,19:62:99:856,0,1497 1 1684472 rs7407 C T 782.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.868;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=0.499;SB=-4.190e+02;SOR=0.868;VQSLOD=7.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,34:78:99:811,0,1108 1 1685213 rs2072928 C G 532.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.844;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=16.351;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=1.097;SB=-2.001e+02;SOR=0.016;VQSLOD=3.54;culprit=FS GT:AD:DP:GQ:PL 0/1:19,19:38:99:561,0,663 1 1688192 rs2281173 A G 843.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.987;HaplotypeScore=3.2925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=1.536;SB=-4.970e+02;SOR=0.422;VQSLOD=9.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,34:76:99:872,0,1039 1 1688469 rs4648623 C G 385.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.925;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.403;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.437;SB=-9.601e+01;SOR=0.095;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:19,14:33:99:414,0,553 1 1690126 rs35357728 A AAC 273.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.10;RPA=1,2;RU=AC;ReadPosRankSum=-1.613;SB=0.00;SOR=0.425;STR;VQSLOD=8.16;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:19:99:311,0,452 1 1690793 rs2235538 G A 102.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.166;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=0.000;SB=-1.765e+00;SOR=1.112;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:7,4:11:99:131,0,213 1 1691375 rs114572917 G A 653.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=0.121;SB=-1.800e+02;SOR=0.797;VQSLOD=7.53;culprit=QD GT:AD:DP:GQ:PL 0/1:48,27:75:99:682,0,1412 1 1696659 rs5021859 A G 851.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.55;SB=-1.145e+02;SOR=3.690;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:72:880,72,0 1 1823922 rs6688000 A G 3012.77 PASS AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.40;SB=-1.611e+03;SOR=1.006;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:93:99:3041,235,0 1 1846582 rs2748987 A G 687.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.39;SB=-4.276e+01;SOR=4.615;VQSLOD=7.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:716,54,0 1 1846765 rs2247560 G A 4370.77 PASS AC=2;AF=1.00;AN=2;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8133;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.76;SB=-2.900e+03;SOR=0.803;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,152:152:99:4399,319,0 1 1847856 rs2748986 G T 2682.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.881;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.32;ReadPosRankSum=1.378;SB=-7.820e+02;SOR=2.225;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:1,82:83:99:2711,205,0 1 1848109 rs2803296 G C 4795.77 PASS AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-1.821e+03;SOR=1.592;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,132:132:99:4824,352,0 1 1849529 rs28640257 A G 1756.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-8.370e+02;SOR=1.342;VQSLOD=7.20;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,57:57:99:1785,138,0 1 1853615 rs148711182 T TCTGA 753.73 PASS AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=0.00;SOR=4.977;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:791,33,0 1 1854109 rs2803348 A G 2908.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-1.603e+03;SOR=0.999;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:2937,211,0 1 1854321 rs2250833 A G 753.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.09;SB=-7.097e+01;SOR=3.716;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:782,60,0 1 1855450 rs28423370 A G 862.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.04;SB=-4.276e+01;SOR=4.892;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:66:891,66,0 1 1857427 rs116133685 G A 1760.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.875;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-0.418;SB=-5.540e+02;SOR=0.665;VQSLOD=8.47;culprit=FS GT:AD:DP:GQ:PL 0/1:74,65:139:99:1789,0,2109 1 1858309 rs941530 T C 6650.77 PASS AC=2;AF=1.00;AN=2;DB;DP=217;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-3.277e+03;SOR=1.018;VQSLOD=5.38;culprit=DP GT:AD:DP:GQ:PL 1/1:0,217:217:99:6679,500,0 1 1859296 rs2748984 T C 2076.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-8.197e+01;SOR=5.709;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:2105,154,0 1 1860087 rs2748983 C T 671.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=-3.080e+02;SOR=1.022;VQSLOD=4.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:700,54,0 1 1860333 . C A 628.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.097;DP=53;Dels=0.00;ExcessHet=3.0103;FS=4.124;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.86;ReadPosRankSum=0.446;SB=-1.920e+02;SOR=1.318;VQSLOD=5.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,25:53:99:657,0,678 1 1861582 rs2803295 C T 2384.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-1.095e+03;SOR=1.319;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2413,178,0 1 1870210 rs2803323 G A 1875.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.89;SB=-1.603e+02;SOR=4.615;VQSLOD=4.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1904,147,0 1 1871979 rs2748982 G A 2986.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.18;SB=-1.463e+03;SOR=1.418;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3015,223,0 1 1873453 rs2748981 G A 1762.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-6.230e+02;SOR=1.919;VQSLOD=6.34;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,56:56:99:1791,132,0 1 1873514 rs2803326 A G 2895.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-1.471e+03;SOR=1.203;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:2924,211,0 1 1873525 rs2803327 T C 3038.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.39;SB=-1.497e+03;SOR=1.112;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:3067,223,0 1 1873697 rs2748980 G A 1647.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.31;SB=-5.950e+02;SOR=1.848;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1676,123,0 1 1873699 rs2748979 G C 1646.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-5.600e+02;SOR=2.004;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1675,120,0 1 1875621 rs2803334 G C 315.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=0.00;SOR=3.258;VQSLOD=7.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:344,27,0 1 1875655 rs2803335 C T 522.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.85;SB=-3.177e+01;SOR=4.047;VQSLOD=7.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:551,45,0 1 1875858 rs2803336 C G 5668.77 PASS AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9944;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.94;SB=-2.185e+03;SOR=1.624;VQSLOD=5.69;culprit=DP GT:AD:DP:GQ:PL 1/1:0,167:167:99:5697,409,0 1 1875859 rs2803337 A G 5551.77 PASS AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9944;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.24;SB=-2.229e+03;SOR=1.624;VQSLOD=6.20;culprit=DP GT:AD:DP:GQ:PL 1/1:0,167:167:99:5580,409,0 1 1878071 rs2803340 C T 632.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.30;SB=-7.297e+01;SOR=3.611;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:51:661,51,0 1 1878628 rs2803341 C T 1232.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.89;SB=-3.777e+01;SOR=5.610;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:96:1261,96,0 1 1886501 rs2748976 C A 513.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.878;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=3.556;POSITIVE_TRAIN_SITE;QD=25.69;ReadPosRankSum=-2.332;SB=-1.623e+02;SOR=0.399;VQSLOD=2.65;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:3,17:20:41:542,41,0 1 1886519 rs2748975 C A 632.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.373;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=2.178;POSITIVE_TRAIN_SITE;QD=26.37;ReadPosRankSum=-2.308;SB=-2.381e+02;SOR=0.504;VQSLOD=2.91;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,22:24:50:661,50,0 1 1887019 rs28548017 A G 1481.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-7.690e+02;SOR=0.990;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1510,111,0 1 1887439 . C T 342.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.723;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.32;ReadPosRankSum=-0.282;SB=-1.765e+00;SOR=1.911;VQSLOD=4.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,11:21:99:371,0,308 1 1888369 rs2803285 A G 597.94 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.813;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.47;ReadPosRankSum=1.645;SB=0.00;SOR=4.514;VQSLOD=3.93;culprit=FS GT:AD:DP:GQ:PL 1/1:1,18:19:14:626,14,0 1 1903419 . C G 1274.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.595;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.734;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.90;ReadPosRankSum=-0.394;SB=-5.370e+02;SOR=0.791;VQSLOD=6.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:67,50:117:99:1303,0,1760 1 1956362 rs2376805 G A 1258.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.903;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.851;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=0.792;SB=-5.830e+02;SOR=0.555;VQSLOD=9.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,47:87:99:1287,0,1045 1 1957299 rs3820007 C T 681.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.905;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=0.205;SB=0.00;SOR=1.022;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:20,27:48:99:710,0,575 1 1959121 rs3795279 T C 647.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.076;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.046;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=-0.338;SB=-2.700e+02;SOR=0.874;VQSLOD=7.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,25:58:99:676,0,806 1 1959789 rs373595836 A G 197.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=6.726;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.99;ReadPosRankSum=-1.722;SB=-5.150e-01;SOR=3.258;VQSLOD=3.72;culprit=FS GT:AD:DP:GQ:PL 0/1:11,7:20:99:226,0,267 1 1960926 rs28581504 T C 481.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.913;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=-1.961;SB=-6.600e+01;SOR=0.330;VQSLOD=8.54;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:16,16:32:99:510,0,523 1 1987993 rs12184 T C 1575.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.14;SB=-1.050e+03;SOR=0.841;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1604,117,0 1 1991014 rs1878745 A G 1569.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.628;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=2.809;SB=-7.880e+02;SOR=0.795;VQSLOD=7.35;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:86,60:146:99:1598,0,2162 1 1991137 rs2292859 G A 1206.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.466;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=1.913;HaplotypeScore=3.7322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=2.234;SB=-3.610e+02;SOR=1.059;VQSLOD=6.83;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:48,45:93:99:1235,0,1297 1 1991162 rs1878747 G A 930.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.018;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.034;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=0.319;SB=-1.610e+02;SOR=0.859;VQSLOD=7.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,34:76:99:959,0,1207 1 1991173 rs2247923 A G 809.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.076;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=1.171;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=0.892;SB=-1.450e+02;SOR=0.902;VQSLOD=7.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,29:67:99:838,0,1084 1 1991241 rs1105100 C G 205.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.412;SB=-1.765e+00;SOR=1.426;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:9,7:16:99:234,0,257 1 2002926 rs76394063 T C 224.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.328;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.129;SB=-7.000e+01;SOR=0.301;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:253,0,268 1 2005740 rs2459986 T C 907.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.6907;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.51;SB=-2.800e+02;SOR=2.517;VQSLOD=4.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:34:75:936,75,0 1 2103506 rs2280272 C G 1936.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.654;DB;DP=192;Dels=0.00;ExcessHet=3.0103;FS=3.437;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=1.506;SB=-1.074e+03;SOR=0.485;VQSLOD=4.86;culprit=DP GT:AD:DP:GQ:PL 0/1:111,81:192:99:1965,0,2995 1 2103836 rs201778648 C T 507.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.304;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.471;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-0.410;SB=-1.310e+02;SOR=0.436;VQSLOD=9.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,20:46:99:536,0,699 1 2106438 rs2292857 G A 253.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=0.063;SB=-7.001e+01;SOR=0.760;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:282,0,160 1 2106596 rs2292858 A G 478.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.210;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.280;HaplotypeScore=1.5810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=-2.217;SB=-1.660e+02;SOR=1.022;VQSLOD=7.24;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:25,20:46:99:507,0,645 1 2106840 rs12135175 T C 359.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=0.00;SOR=4.804;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:388,30,0 1 2118539 rs2503699 T C 1951.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.70;SB=-9.440e+02;SOR=1.263;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:1980,141,0 1 2121118 rs2503701 C T 801.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.359;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.54;ReadPosRankSum=0.129;SB=-3.180e+02;SOR=0.739;VQSLOD=8.65;culprit=FS GT:AD:DP:GQ:PL 0/1:52,32:84:99:830,0,1369 1 2130262 rs144802031 C G 1302.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.945;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=1.622;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=-1.554;SB=-6.320e+02;SOR=0.531;VQSLOD=8.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,55:114:99:1331,0,1771 1 2144982 rs2480714 G T 1196.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=-5.880e+02;SOR=1.206;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:90:1225,90,0 1 2234632 rs2279702 G A 846.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=3.620;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.700;SB=-3.020e+02;SOR=1.262;VQSLOD=7.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,30:61:99:875,0,889 1 2235019 rs4648631 T C 193.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.566;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=-0.389;SB=-4.076e+01;SOR=0.293;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:222,0,153 1 2255524 rs3737638 C T 500.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.254;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=1.681;SB=-1.940e+02;SOR=1.112;VQSLOD=6.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,20:43:99:529,0,540 1 2286947 rs1039100 A G 1643.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-7.370e+02;SOR=1.609;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1672,120,0 1 2288852 rs2645087 G A 730.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.462;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=8.114;HaplotypeScore=14.5001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=-1.066;SB=-8.800e+01;SOR=2.226;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 0/1:22,25:47:99:759,0,644 1 2290256 rs2840545 G A 281.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.414;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-0.303;SB=-4.176e+01;SOR=0.188;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:310,0,324 1 2310470 rs903902 A T 762.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.750;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=0.968;SB=-2.450e+02;SOR=0.804;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:28,27:55:99:791,0,711 1 2316583 rs12565955 C T 135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=-0.763;SB=-5.400e+01;SOR=0.941;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:164,0,139 1 2317069 rs16825089 A C 169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.279;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.439;SB=0.00;SOR=0.473;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:198,0,262 1 2327075 rs3736330 C T 120.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.63;ReadPosRankSum=-1.527;SB=0.00;SOR=0.307;VQSLOD=9.85;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:14:99:149,0,317 1 2328714 rs2645081 A G 795.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.029;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=1.167;HaplotypeScore=2.8820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=-1.186;SB=-2.270e+02;SOR=0.446;VQSLOD=9.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,30:68:99:824,0,1115 1 2333944 . T TC 345.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.21;RPA=3,4;RU=C;ReadPosRankSum=-0.544;SB=0.00;SOR=1.179;STR;VQSLOD=8.63;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:19:99:383,0,227 1 2337032 rs1129171 C T 447.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.157;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.32;ReadPosRankSum=-0.631;SB=-1.080e+02;SOR=1.508;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 0/1:4,17:22:76:476,0,76 1 2340200 rs2494598 T C 1082.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=2.651;HaplotypeScore=2.8933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.12;ReadPosRankSum=0.235;SB=-3.880e+02;SOR=0.994;VQSLOD=7.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:67,40:107:99:1111,0,1783 1 2399119 rs2494632 A G 1025.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.49;SB=-6.590e+02;SOR=0.804;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:75:1054,75,0 1 2399149 rs2494631 A G 1089.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.45;SB=-6.880e+02;SOR=0.859;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:81:1118,81,0 1 2409892 rs12727342 A G 663.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.589;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.106;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=0.573;SB=-2.690e+02;SOR=0.437;VQSLOD=9.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,27:65:99:692,0,1067 1 2411451 rs10797428 A G 1693.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.736;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=-2.712;SB=-9.360e+02;SOR=0.703;VQSLOD=8.53;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:41,65:106:99:1722,0,1201 1 2418625 rs7512269 C T 789.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.955;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=-1.191;SB=-1.990e+02;SOR=0.770;VQSLOD=8.75;culprit=FS GT:AD:DP:GQ:PL 0/1:38,34:72:99:818,0,1096 1 2418935 rs10910082 C T 43.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.57;ReadPosRankSum=-0.441;SB=-1.807e+01;SOR=0.859;VQSLOD=8.62;culprit=QD GT:AD:DP:GQ:PL 0/1:14,3:17:72:72,0,410 1 2420590 rs10752744 T C 2268.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.86;SB=-4.170e+02;SOR=3.360;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2297,172,0 1 2420913 rs6668720 A G 962.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.228;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.706;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=0.981;SB=-7.497e+01;SOR=0.280;VQSLOD=8.62;culprit=QD GT:AD:DP:GQ:PL 0/1:16,30:46:99:991,0,470 1 2422614 rs2477699 G A 2218.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-8.570e+02;SOR=1.675;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2247,169,0 1 2426149 rs2182177 C A 341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.78;ReadPosRankSum=2.460;SB=-3.976e+01;SOR=1.179;VQSLOD=7.54;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:3,12:15:78:370,0,78 1 2426766 rs3001347 A G 127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.964;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=0.415;SB=-4.276e+01;SOR=0.132;VQSLOD=9.40;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,6:13:99:156,0,243 1 2428874 rs2477706 T C 2254.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.01;SB=0.00;SOR=8.086;VQSLOD=1.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:57:99:2283,169,0 1 2430617 rs2296442 C T 119.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.920;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.86;ReadPosRankSum=-0.859;SB=-9.900e+01;SOR=0.200;VQSLOD=8.49;culprit=QD GT:AD:DP:GQ:PL 0/1:23,8:31:99:148,0,650 1 2431057 rs2477707 C T 1196.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-0.727;SB=-6.600e+02;SOR=0.663;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:45,49:94:99:1225,0,1198 1 2433900 rs12736998 C T 106.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.019;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.276;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.21;ReadPosRankSum=0.564;SB=-6.000e+01;SOR=0.799;VQSLOD=4.87;culprit=QD GT:AD:DP:GQ:PL 0/1:8,5:13:99:135,0,216 1 2441358 rs2494620 T C 486.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.582;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.203;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-0.542;SB=-1.760e+02;SOR=0.941;VQSLOD=7.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,20:42:99:515,0,579 1 2441392 rs2494619 T C 644.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.123;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=4.240;HaplotypeScore=2.7041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=0.496;SB=-2.290e+02;SOR=1.483;VQSLOD=6.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,25:48:99:673,0,549 1 2441503 . C G 695.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.388;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.38;ReadPosRankSum=-1.392;SB=-3.320e+02;SOR=0.832;VQSLOD=5.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,23:52:99:724,0,731 1 2442374 rs7543665 G A 214.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=2.458;SB=-4.076e+01;SOR=0.368;VQSLOD=8.70;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,8:13:99:243,0,169 1 2442725 rs75446445 C A 1160.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.368;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=2.180;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-1.392;SB=-3.450e+02;SOR=0.392;VQSLOD=9.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,45:86:99:1189,0,1181 1 2442953 rs2236397 C A 1829.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.969;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=7.729;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=-0.918;SB=-8.450e+02;SOR=1.078;VQSLOD=4.59;culprit=FS GT:AD:DP:GQ:PL 0/1:68,67:135:99:1858,0,1941 1 2443212 rs2236396 G A 537.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=2.039;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.30;ReadPosRankSum=1.254;SB=-1.450e+02;SOR=0.242;VQSLOD=9.17;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,20:33:99:566,0,393 1 2445406 rs2247308 A G 821.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.759;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.954;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-0.199;SB=-3.990e+02;SOR=0.523;VQSLOD=9.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,31:69:99:850,0,952 1 2446880 rs2236395 A G 1037.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.418;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=2.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-1.044;SB=-3.160e+02;SOR=0.403;VQSLOD=10.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,40:83:99:1066,0,1205 1 2446960 rs2236394 T C 332.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.526;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=0.092;SB=0.00;SOR=0.776;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:11,12:23:99:361,0,362 1 2452357 rs2494636 G A 879.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.620;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=3.777;HaplotypeScore=2.9985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=0.958;SB=-3.800e+02;SOR=0.326;VQSLOD=10.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,37:74:99:908,0,1059 1 2452444 rs4648643 A G 440.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=0.335;SB=-1.200e+02;SOR=0.573;VQSLOD=9.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,14:26:99:469,0,388 1 2452569 rs2985862 T C 1713.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.81;SB=-2.920e+02;SOR=3.352;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1742,132,0 1 2487663 rs2227312 C A 4147.77 PASS AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=-1.903e+03;SOR=1.237;VQSLOD=5.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,139:140:99:4176,307,0 1 2487766 . T C 3877.77 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7507;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.02;SB=-1.968e+03;SOR=1.170;VQSLOD=3.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,125:126:99:3906,298,0 1 2488153 rs4870 A G 950.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=-4.040e+02;SOR=1.681;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:69:979,69,0 1 2488930 rs2495366 G A 404.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.73;SB=0.00;SOR=5.136;VQSLOD=8.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:433,33,0 1 2490898 rs2257763 C A 1758.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.424;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=28.1664;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.81;ReadPosRankSum=0.715;SB=-5.740e+02;SOR=1.226;VQSLOD=8.50;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:7,52:69:99:1787,141,0 1 2490942 rs2281852 C A 2048.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-1.214e+03;SOR=0.784;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2077,153,0 1 2491205 rs2234161 C T 2668.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-1.098e+03;SOR=1.473;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2697,199,0 1 2494785 . G A 1511.77 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;QD=27.08;SB=0.00;SOR=7.378;VQSLOD=2.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1540,117,0 1 2520302 rs6667564 T C 1550.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;SB=-4.970e+02;SOR=2.004;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1579,114,0 1 2520500 rs6701238 G A 1493.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=-5.010e+02;SOR=2.030;VQSLOD=5.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1522,117,0 1 2520527 rs6670198 T C 1236.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.97;SB=-2.800e+02;SOR=2.649;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:93:1265,93,0 1 2523212 rs876938 G C 1075.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.10;SB=-3.960e+02;SOR=1.460;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:84:1104,84,0 1 2524205 rs745368 C T 1982.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.54;SB=-9.890e+02;SOR=1.308;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2011,144,0 1 2524457 rs745367 T C 708.78 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.340;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.26;ReadPosRankSum=-0.133;SB=-2.331e+02;SOR=1.112;VQSLOD=8.62;culprit=FS GT:AD:DP:GQ:PL 1/1:1,25:26:24:737,24,0 1 2524485 rs1555790 C T 527.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.458;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.00;ReadPosRankSum=1.533;SB=-3.677e+01;SOR=2.833;VQSLOD=5.79;culprit=FS GT:AD:DP:GQ:PL 1/1:1,16:17:12:555,12,0 1 2525660 rs3748818 G A 834.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.66;SB=-4.276e+01;SOR=4.804;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:863,66,0 1 2525665 rs3748817 T C 965.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;SB=-3.876e+01;SOR=5.058;VQSLOD=4.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:75:994,75,0 1 2526746 rs3748816 A G 1778.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.279;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.95;ReadPosRankSum=0.683;SB=-1.165e+03;SOR=0.322;VQSLOD=7.83;culprit=FS GT:AD:DP:GQ:PL 1/1:1,65:66:99:1807,99,0 1 2527683 . A G 1133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.660;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.722;HaplotypeScore=2.6985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.55;ReadPosRankSum=0.064;SB=-1.020e+02;SOR=1.244;VQSLOD=4.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,35:58:99:1162,0,677 1 2535613 rs4648562 C A 1185.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=-5.370e+02;SOR=1.022;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:93:1214,93,0 1 2535758 rs4648652 A G 1971.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.0596;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.77;SB=-1.024e+03;SOR=1.195;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2000,144,0 1 2537095 rs78506337 G A 1088.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.43;SB=-4.140e+02;SOR=1.609;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:81:1117,81,0 1 2537838 rs41300092 C T 3766.77 PASS AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-1.257e+03;SOR=2.010;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,122:122:99:3795,283,0 1 2538349 rs10797436 G A 673.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.91;SB=-8.097e+01;SOR=3.611;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:702,54,0 1 2541269 rs10797440 A G 4528.77 PASS AC=2;AF=1.00;AN=2;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.79;SB=-2.006e+03;SOR=1.402;VQSLOD=5.59;culprit=DP GT:AD:DP:GQ:PL 1/1:0,152:152:99:4557,337,0 1 2542653 rs10910111 A G 562.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.26;SB=-2.061e+02;SOR=1.863;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:42:591,42,0 1 2573199 rs4648662 A G 2002.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.29;SB=-1.183e+03;SOR=0.892;VQSLOD=7.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2031,144,0 1 2700372 rs4648390 C T 2398.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.90;SB=-1.046e+03;SOR=1.725;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2427,184,0 1 2984087 rs2297829 C A 1542.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.411;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=1.434;HaplotypeScore=2.9858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-0.876;SB=-8.400e+02;SOR=0.525;VQSLOD=8.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:70,60:130:99:1571,0,1771 1 3301721 rs2282198 C T 4175.77 PASS AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.95;SB=-9.390e+02;SOR=2.833;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,123:123:99:4204,310,0 1 3312914 rs871822 T G 2959.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.30;ReadPosRankSum=-1.149;SB=-1.896e+03;SOR=0.239;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:1,100:101:99:2988,217,0 1 3328358 rs870124 T C 1853.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-7.540e+02;SOR=1.569;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1882,138,0 1 3350416 rs375492357 C A 945.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.133;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=6.205;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.33;ReadPosRankSum=0.257;SB=-1.520e+02;SOR=1.675;VQSLOD=4.64;culprit=FS GT:AD:DP:GQ:PL 0/1:32,34:66:99:974,0,793 1 3383593 rs3893316 G T 949.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;SB=-7.097e+01;SOR=4.407;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:78:978,78,0 1 3383665 rs7550948 G A 3169.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.72;SB=-7.160e+02;SOR=2.858;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:3198,238,0 1 3383898 rs6424078 A G 3269.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.71;SB=-5.340e+02;SOR=3.329;VQSLOD=5.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:98:99:3298,247,0 1 3385250 rs1417897 C A 846.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.95;SB=-3.777e+01;SOR=4.977;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:69:875,69,0 1 3385330 rs2493249 T C 2338.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-1.085e+03;SOR=1.281;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2367,175,0 1 3389727 rs2185639 C T 3265.77 PASS AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.90;SB=-1.948e+03;SOR=0.822;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,113:113:99:3294,247,0 1 3390238 rs2493323 T A 1309.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-6.570e+02;SOR=1.105;VQSLOD=4.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1338,99,0 1 3394456 rs4638054 T C 2909.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-7.930e+02;SOR=2.303;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2938,220,0 1 3394640 rs4422946 A G 4604.77 PASS AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-2.095e+03;SOR=1.426;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,148:148:99:4633,334,0 1 3394674 rs4534324 T C 3510.77 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-1.092e+03;SOR=2.387;VQSLOD=5.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,114:114:99:3539,277,0 1 3395039 rs10797395 G A 5088.77 PASS AC=2;AF=1.00;AN=2;DB;DP=169;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6939;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.11;SB=-2.862e+03;SOR=0.804;VQSLOD=6.29;culprit=DP GT:AD:DP:GQ:PL 1/1:0,169:169:99:5117,382,0 1 3395229 rs4553117 T C 972.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.54;SB=0.00;SOR=6.804;VQSLOD=8.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:84:1001,84,0 1 3395866 . G A 169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.533;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.13;ReadPosRankSum=0.000;SB=-1.765e+00;SOR=1.402;VQSLOD=8.05;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:198,0,209 1 3395973 rs70938094 ACC A 2524.73 PASS AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.54;RPA=5,3;RU=C;SB=-1.062e+03;SOR=1.136;STR;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:55:99:2562,157,0 1 3396278 . T TGCCCCG 2576.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.838;DP=99;ExcessHet=3.0103;FS=3.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.32;RPA=2,3;RU=GCCCCG;ReadPosRankSum=0.912;SB=-7.050e+02;SOR=0.315;STR;VQSLOD=7.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,34:99:99:2614,0,4294 1 3396609 rs881978 C T 1270.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4250;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-4.276e+01;SOR=5.728;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:99:1299,99,0 1 3397188 rs2487677 T C 707.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-1.941e+02;SOR=2.303;VQSLOD=5.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:54:736,54,0 1 3414105 rs10909951 C T 2550.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=-1.263e+03;SOR=1.302;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2579,187,0 1 3415688 . T G 530.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.887;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.35;ReadPosRankSum=0.604;SB=-3.630e+02;SOR=0.348;VQSLOD=8.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,22:37:99:559,0,440 1 3416449 rs7553399 C A 2495.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;SB=-1.312e+03;SOR=1.068;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2524,184,0 1 3417131 rs2821031 A G 2949.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=-1.798e+03;SOR=0.914;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:2978,223,0 1 3417960 rs4648507 G A 1222.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-5.550e+02;SOR=1.501;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:42:90:1251,90,0 1 3418391 rs4648508 C T 549.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.73;ReadPosRankSum=-1.331;SB=-2.430e+02;SOR=0.783;VQSLOD=8.45;culprit=QD GT:AD:DP:GQ:PL 0/1:39,24:63:99:578,0,995 1 3418565 rs2821030 T C 1126.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.48;SB=-4.070e+02;SOR=2.038;VQSLOD=5.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:90:1155,90,0 1 3418613 rs139503756 CCG C 532.73 PASS AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.61;SB=-1.050e+02;SOR=2.494;VQSLOD=5.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:17:33:570,33,0 1 3421897 rs2821008 A G 454.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.455;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=8.448;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.35;ReadPosRankSum=-0.813;SB=-1.270e+02;SOR=1.232;VQSLOD=5.55;culprit=QD GT:AD:DP:GQ:PL 0/1:63,22:85:99:483,0,1889 1 3422144 rs2105305 G C 191.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.34;ReadPosRankSum=0.032;SB=-1.030e+02;SOR=0.490;VQSLOD=9.38;culprit=QD GT:AD:DP:GQ:PL 0/1:14,9:23:99:220,0,425 1 3422642 rs2247236 A G 1208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.429;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-1.639;SB=-8.000e+02;SOR=0.679;VQSLOD=8.64;culprit=FS GT:AD:DP:GQ:PL 0/1:42,50:92:99:1237,0,1040 1 3424508 rs41315296 G A 2013.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.052;DB;DP=168;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.3917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=0.041;SB=-1.027e+03;SOR=0.708;VQSLOD=7.52;culprit=DP GT:AD:DP:GQ:PL 0/1:91,77:168:99:2042,0,2411 1 3425183 rs61735125 G A 776.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.222;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=-0.595;SB=-3.310e+02;SOR=0.680;VQSLOD=8.95;culprit=FS GT:AD:DP:GQ:PL 0/1:36,33:69:99:805,0,973 1 3426594 rs2821005 A G 548.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.862;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=-0.748;SB=-2.940e+02;SOR=0.392;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 0/1:26,27:53:99:577,0,716 1 3426717 rs2821003 A C 150.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=0.752;SB=-1.765e+00;SOR=1.402;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:179,0,278 1 3427562 rs114650222 C T 251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.698;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.87;ReadPosRankSum=-0.732;SB=-5.400e+01;SOR=0.927;VQSLOD=8.06;culprit=QD GT:AD:DP:GQ:PL 0/1:22,10:32:99:280,0,574 1 3428160 rs2820999 T G 638.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.883;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.562;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=0.211;SB=-4.030e+02;SOR=0.321;VQSLOD=9.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,27:67:99:667,0,1014 1 3428424 rs4648391 G T 264.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.576;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.681;SB=-1.611e+01;SOR=1.329;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:293,0,335 1 3428428 rs4648514 C T 263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.818;SB=-3.200e+01;SOR=1.179;VQSLOD=9.29;culprit=FS GT:AD:DP:GQ:PL 0/1:10,9:19:99:292,0,338 1 3440647 rs2794322 T C 254.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.606;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=0.392;SB=-6.500e+01;SOR=0.551;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:7,10:17:99:283,0,237 1 3440919 rs75891780 G A 275.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.380;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=0.409;SB=-2.903e+01;SOR=0.804;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:304,0,278 1 3477414 rs138354618 GGGCT G 457.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.46;RPA=2,1;RU=GGCT;ReadPosRankSum=0.102;SB=-6.000e+01;SOR=1.371;STR;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:20:99:495,0,517 1 3496328 rs2821051 T C 367.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.29;SB=-1.075e+02;SOR=2.147;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:396,30,0 1 3496479 rs2794340 T C 662.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.62;SB=-3.940e+02;SOR=1.051;VQSLOD=4.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:51:691,51,0 1 3511934 rs7513275 A G 1127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.9920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=1.085;SB=-5.600e+02;SOR=0.672;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 0/1:36,47:84:99:1156,0,812 1 3518944 rs7521546 T C 925.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.45;SB=-3.876e+01;SOR=5.058;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:72:954,72,0 1 3527944 rs10797402 C G 2105.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.917;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.40;ReadPosRankSum=1.280;SB=-1.150e+03;SOR=0.525;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:1,64:65:99:2134,157,0 1 3528082 rs10797403 T C 772.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-7.597e+01;SOR=3.912;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:801,60,0 1 3548136 rs2760321 T C 1370.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.676;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=-1.989;SB=-7.320e+02;SOR=0.770;VQSLOD=7.91;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:68,52:120:99:1399,0,1833 1 3563428 rs76161888 C T 1009.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.905;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.089;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=0.362;SB=-2.440e+02;SOR=0.909;VQSLOD=7.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,35:65:99:1038,0,768 1 3563512 rs34514629 GC G 788.73 PASS AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.52;SB=0.00;SOR=5.892;VQSLOD=8.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:826,54,0 1 3566625 rs145464993 AGCAGGCTG A 2234.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.439;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQ0=0;MQRankSum=1.261;QD=22.05;ReadPosRankSum=-0.473;SB=-5.990e+02;SOR=0.906;VQSLOD=2.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,22:42:99:2272,0,1743 1 3566706 rs2251098 G A 543.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-4.076e+01;SOR=4.174;VQSLOD=8.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:45:572,45,0 1 3599514 rs57596460 C T 445.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.411;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=0.175;SB=-8.900e+01;SOR=1.077;VQSLOD=7.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,18:47:99:474,0,862 1 3599750 rs57492244 TG T 1541.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQ0=0;MQRankSum=0.800;POSITIVE_TRAIN_SITE;QD=19.27;RPA=7,6;RU=G;ReadPosRankSum=-0.348;SB=-4.420e+02;SOR=0.814;STR;VQSLOD=3.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,50:91:99:1579,0,854 1 3638674 rs1801174 C T 1581.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.431;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-0.336;SB=-9.700e+02;SOR=0.779;VQSLOD=8.17;culprit=FS GT:AD:DP:GQ:PL 0/1:76,66:143:99:1610,0,1892 1 3640085 rs6424091 C G 269.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=27.1232;MLEAC=1;MLEAF=0.500;MQ=60.28;MQ0=0;MQRankSum=1.625;POSITIVE_TRAIN_SITE;QD=7.10;ReadPosRankSum=-0.580;SB=-5.800e+01;SOR=0.754;VQSLOD=2.96;culprit=QD GT:AD:DP:GQ:PL 0/1:27,11:38:99:298,0,673 1 3640134 rs35939665 TCTGC T 242.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQ0=0;MQRankSum=0.921;POSITIVE_TRAIN_SITE;QD=13.00;RPA=2,1;RU=CTGC;ReadPosRankSum=-0.843;SB=0.00;SOR=0.307;STR;VQSLOD=3.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,5:19:99:280,0,583 1 3644349 rs2181486 A G 625.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.398;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.571;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=1.409;SB=-9.000e+01;SOR=1.082;VQSLOD=6.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,21:41:99:654,0,549 1 3644374 rs2146657 A G 590.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=1.783;SB=-6.800e+01;SOR=0.957;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:16,20:36:99:619,0,472 1 3644669 rs2236367 C T 942.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.888;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=3.233;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=-1.205;SB=-4.040e+02;SOR=0.339;VQSLOD=9.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,40:84:99:971,0,1160 1 3644805 rs2236366 A G 1016.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.764;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-0.540;SB=-4.440e+02;SOR=0.670;VQSLOD=8.72;culprit=FS GT:AD:DP:GQ:PL 0/1:58,41:99:99:1045,0,1529 1 3644858 rs2236365 G C 617.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.783;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=5.893;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=0.795;SB=-3.180e+02;SOR=0.243;VQSLOD=8.64;culprit=FS GT:AD:DP:GQ:PL 0/1:35,27:62:99:646,0,1031 1 3646192 rs1885867 G A 625.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.637;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.198;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=-0.029;SB=-3.730e+02;SOR=0.648;VQSLOD=5.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,26:61:99:654,0,1003 1 3646214 rs1885866 T C 678.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.962;HaplotypeScore=2.5975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=-0.677;SB=-4.150e+02;SOR=0.504;VQSLOD=9.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,28:64:99:707,0,897 1 3646291 rs1885865 G A 749.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.541;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=6.832;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=-0.575;SB=-3.540e+02;SOR=0.759;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 0/1:36,28:64:99:778,0,901 1 3701491 rs2996426 A G 127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-0.298;SB=-3.400e+01;SOR=0.693;VQSLOD=9.88;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:156,0,138 1 3703337 rs2368537 G C 719.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-2.900e+02;SOR=1.519;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:54:748,54,0 1 3732103 rs4648409 T C 1391.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.637;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=-0.697;SB=-5.620e+02;SOR=0.720;VQSLOD=8.46;culprit=FS GT:AD:DP:GQ:PL 0/1:72,57:129:99:1420,0,2008 1 3732172 rs4233019 C T 716.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.312;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=4.800;HaplotypeScore=3.5434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=1.503;SB=-4.900e+01;SOR=1.508;VQSLOD=6.10;culprit=FS GT:AD:DP:GQ:PL 0/1:37,27:64:99:745,0,1056 1 3732639 rs6702916 T A 571.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.023;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.373;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.785;SB=-2.010e+02;SOR=0.450;VQSLOD=9.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,24:45:99:600,0,649 1 3732707 rs6702935 T C 1007.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=4.126;HaplotypeScore=1.9328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=0.499;SB=-5.230e+02;SOR=0.375;VQSLOD=9.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,41:91:99:1036,0,1235 1 3732782 rs6703035 T C 1140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.062;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=1.638;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-0.782;SB=-6.890e+02;SOR=0.508;VQSLOD=9.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,42:101:99:1169,0,1766 1 3742257 rs12759497 C T 339.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.754;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.65;ReadPosRankSum=-1.299;SB=-7.997e+01;SOR=0.610;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:3,12:15:84:368,0,84 1 3742560 rs2275835 G A 689.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.224;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.471;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=-0.702;SB=-3.670e+02;SOR=0.402;VQSLOD=9.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,25:48:99:718,0,697 1 3743109 rs2275834 A G 511.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.001;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=0.069;SB=-2.510e+02;SOR=1.194;VQSLOD=6.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,21:50:99:540,0,901 1 3743319 rs6663840 G A 1024.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.848;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=3.831;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=0.125;SB=-5.690e+02;SOR=1.060;VQSLOD=7.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,44:98:99:1053,0,1405 1 3743391 rs6688969 C T 562.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.338;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=-1.648;SB=-1.940e+02;SOR=0.765;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:32,23:55:99:591,0,892 1 3743433 . T TG 338.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DP=35;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;RPA=2,3;RU=G;ReadPosRankSum=0.310;SB=-1.460e+02;SOR=0.307;STR;VQSLOD=9.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,11:35:99:376,0,781 1 3745787 rs2275832 T C 958.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.792;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.246;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=1.419;SB=-4.420e+02;SOR=1.218;VQSLOD=7.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,36:72:99:987,0,921 1 3745924 rs2275831 G A 460.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.570;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.222;HaplotypeScore=2.6812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=-0.831;SB=-2.501e+01;SOR=1.371;VQSLOD=7.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,16:32:99:489,0,413 1 3746254 rs2275830 T C 260.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.656;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=0.071;SB=-7.197e+01;SOR=0.307;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:4,10:14:99:289,0,114 1 3746583 rs2275828 G T 394.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.493;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=6.181;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=0.437;SB=-1.321e+01;SOR=2.093;VQSLOD=5.76;culprit=FS GT:AD:DP:GQ:PL 0/1:19,14:33:99:423,0,500 1 3746589 rs2275826 C G 447.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=6.181;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=0.419;SB=-5.500e+01;SOR=2.093;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 0/1:19,14:33:99:476,0,539 1 3747580 rs6424058 C T 268.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.674;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=4.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=-0.128;SB=-1.765e+00;SOR=2.833;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:297,0,129 1 3747603 rs6413779 T C 349.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=0.660;SB=-3.101e+01;SOR=0.892;VQSLOD=9.98;culprit=FS GT:AD:DP:GQ:PL 0/1:10,12:22:99:378,0,299 1 3750215 rs35801288 AC A 250.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.472;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQ0=0;MQRankSum=1.385;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-0.623;SB=0.00;SOR=0.914;VQSLOD=3.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,10:18:99:288,0,308 1 3752868 rs59512443 CAA C 138.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.91;RPA=19,17;RU=A;ReadPosRankSum=0.873;SB=0.00;SOR=0.693;STR;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:176,0,132 1 3753136 rs2275824 A T 151.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.43;ReadPosRankSum=-0.515;SB=-8.600e+01;SOR=0.446;VQSLOD=9.21;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:180,0,347 1 3755675 rs1891941 T C 1485.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.771;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=1.413;HaplotypeScore=2.7881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-0.959;SB=-9.010e+02;SOR=0.563;VQSLOD=9.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:69,59:128:99:1514,0,1764 1 3756120 rs1539649 A G 592.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.226;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.446;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=0.071;SB=-2.480e+02;SOR=1.170;VQSLOD=7.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,26:53:99:621,0,614 1 3759784 rs10797347 A G 556.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.081;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.099;SB=-3.540e+02;SOR=0.846;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:22,24:46:99:585,0,556 1 3759889 . T TA 55.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;DP=18;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.98;RPA=15,16;RU=A;ReadPosRankSum=-0.193;SB=-4.514e+01;SOR=0.084;STR;VQSLOD=6.00;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:18:93:93,0,178 1 3759937 rs10909801 A G 60.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.730;HaplotypeScore=2.9104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.08;ReadPosRankSum=-0.648;SB=-4.276e+01;SOR=0.169;VQSLOD=8.58;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:89:89,0,160 1 3761273 . G A 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.7402;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=-1.313;QD=6.80;ReadPosRankSum=2.281;SB=0.00;SOR=0.250;VQSLOD=1.50;culprit=QD GT:AD:DP:GQ:PL 0/1:14,7:21:99:171,0,450 1 3761273 . G GA 313.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=-0.606;QD=14.94;RPA=7,8;RU=A;ReadPosRankSum=-0.785;SB=0.00;SOR=1.508;STR;VQSLOD=1.50;culprit=QD GT:AD:DP:GQ:PL 0/1:7,14:21:99:351,0,127 1 3761479 rs2275822 C T 1552.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=4.145;HaplotypeScore=1.8997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=0.936;SB=-8.550e+02;SOR=0.878;VQSLOD=6.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:69,61:130:99:1581,0,1906 1 3761650 rs2275821 A G 550.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.365;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-0.925;SB=-1.420e+02;SOR=0.484;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:22,18:40:99:579,0,739 1 3768719 rs1539647 T C 291.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.011;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=0.882;SB=0.00;SOR=0.610;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 0/1:11,10:21:99:320,0,367 1 3768729 rs1539648 T C 331.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.554;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=1.233;SB=0.00;SOR=0.495;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:14,11:25:99:360,0,459 1 3775454 rs4376673 C G 641.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.126;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.590;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-0.064;SB=-9.601e+01;SOR=0.175;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:24,23:47:99:670,0,705 1 3782608 rs10909809 C T 499.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.342;HaplotypeScore=2.5264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-0.951;SB=-1.920e+02;SOR=1.112;VQSLOD=7.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,20:38:99:528,0,578 1 3784454 rs76754622 T C 460.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.480;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=1.614;SB=-1.370e+02;SOR=1.284;VQSLOD=6.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,18:36:99:489,0,505 1 3784464 rs72848469 G A 456.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=2.104;SB=-2.010e+02;SOR=0.765;VQSLOD=8.60;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:22,20:42:99:485,0,635 1 3786146 rs35969031 C G 544.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.05;SB=-8.297e+01;SOR=3.258;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:573,42,0 1 3786245 rs12738235 G A 1140.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-5.200e+02;SOR=1.244;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:35:87:1169,87,0 1 3786410 rs10909811 G A 1210.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-4.690e+02;SOR=1.670;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:90:1239,90,0 1 3788891 rs151051391 C T 139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-0.298;SB=0.00;SOR=0.693;VQSLOD=9.89;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:168,0,171 1 3788925 rs12085494 C T 258.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.424;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=0.564;SB=-3.404e+01;SOR=1.552;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:8,9:17:99:287,0,194 1 3788977 rs149933818 AG A 1202.73 PASS AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.07;SB=-1.831e+02;SOR=3.056;VQSLOD=5.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:93:1240,93,0 1 3789178 . G GGGCCCTGTCCCTGCCGC 6049.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.671;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=66.99;MQ0=0;MQRankSum=1.967;QD=15.04;ReadPosRankSum=0.122;SB=-2.512e+03;SOR=0.330;VQSLOD=1.63;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,70:82:78:6087,78,0 1 3789195 rs11581401 T C 1854.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.6316;MLEAC=2;MLEAF=1.00;MQ=65.94;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;SB=-9.470e+02;SOR=1.437;VQSLOD=4.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:1883,141,0 1 3789211 rs75402433 A G 764.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.961;DB;DP=58;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.5257;MLEAC=1;MLEAF=0.500;MQ=65.19;MQ0=0;MQRankSum=0.805;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=-0.584;SB=-2.810e+02;SOR=0.638;VQSLOD=3.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,29:57:99:793,0,709 1 3789212 rs79548119 T C 758.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.3913;MLEAC=1;MLEAF=0.500;MQ=65.19;MQ0=0;MQRankSum=0.792;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-0.321;SB=-3.520e+02;SOR=0.593;VQSLOD=2.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,31:58:99:787,0,714 1 3789319 rs34725762 A G 1052.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.77;SB=-3.170e+02;SOR=1.863;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:81:1081,81,0 1 3789362 rs35930817 C T 1618.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-4.520e+02;SOR=2.348;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1647,129,0 1 3789662 rs11581471 A G 381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=38.10;SB=0.00;SOR=4.804;VQSLOD=8.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:410,30,0 1 3806643 rs4520357 T A 462.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.911;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-1.188;SB=-2.590e+02;SOR=0.782;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:15,21:36:99:491,0,352 1 3807593 rs4274008 G C 2268.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.86;SB=-1.187e+03;SOR=0.917;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2297,169,0 1 3809205 rs111313879 A G 278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.709;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8808;MLEAC=1;MLEAF=0.500;MQ=58.74;MQ0=0;MQRankSum=1.599;QD=19.91;ReadPosRankSum=-0.647;SB=-4.176e+01;SOR=0.446;VQSLOD=2.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,9:14:99:307,0,154 1 4772053 rs1061968 T C 1387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.791;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=0.292;SB=-9.120e+02;SOR=0.512;VQSLOD=9.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,58:96:99:1416,0,951 1 4772717 rs242056 G A 603.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.729;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=6.300;HaplotypeScore=2.6492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.27;ReadPosRankSum=0.294;SB=-3.500e+01;SOR=1.674;VQSLOD=5.77;culprit=QD GT:AD:DP:GQ:PL 0/1:49,24:73:99:632,0,1383 1 4829834 rs184473115 C G 281.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.101;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=0.227;SB=-3.100e+01;SOR=1.329;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:310,0,278 1 4829835 rs2072901 A G 276.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=0.303;SB=-3.200e+01;SOR=1.329;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:305,0,261 1 4829881 rs2072902 G A 398.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.774;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=0.092;SB=-1.040e+02;SOR=0.874;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:13,15:28:99:427,0,319 1 4834606 rs389959 T C 1140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.868;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=1.743;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=-0.545;SB=-5.100e+02;SOR=0.952;VQSLOD=7.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,48:97:99:1169,0,1263 1 4847845 rs4654460 G A 4499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-2.690e+03;SOR=0.821;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,147:147:99:4528,328,0 1 4847990 rs117150412 C T 836.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.934;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=0.472;SB=-2.070e+02;SOR=0.625;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:27,30:57:99:865,0,676 1 4848048 rs118072248 A G 357.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.789;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.862;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-0.022;SB=-9.600e+01;SOR=0.346;VQSLOD=9.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,14:29:99:386,0,448 1 5623965 rs9439613 C T 1587.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=-5.940e+02;SOR=1.390;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1616,120,0 1 5873771 rs55759711 A G 366.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-7.497e+01;SOR=2.670;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:13:30:395,30,0 1 5927738 rs2297791 G A 215.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.001;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=1.019;SB=-3.500e+01;SOR=0.836;VQSLOD=10.26;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:244,0,207 1 5934500 rs905467 T C 1462.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.784;HaplotypeScore=7.0522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-0.133;SB=-8.560e+02;SOR=0.565;VQSLOD=9.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,59:97:99:1491,0,909 1 5935162 rs1287637 A T 601.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.515;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.661;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.06;ReadPosRankSum=-0.563;SB=-2.940e+02;SOR=0.412;VQSLOD=8.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,22:30:99:630,0,214 1 5935222 rs963030 T C 66.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.656;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.45;ReadPosRankSum=-0.719;SB=-2.901e+01;SOR=0.582;VQSLOD=8.88;culprit=QD GT:AD:DP:GQ:PL 0/1:11,4:15:95:95,0,301 1 5937091 rs1622955 T C 1065.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.10;SB=-1.791e+02;SOR=2.985;VQSLOD=5.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:84:1094,84,0 1 5937168 rs3747992 G A 2921.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.83;SB=-7.380e+02;SOR=2.494;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2950,223,0 1 5937391 rs3747989 C T 5443.77 PASS AC=2;AF=1.00;AN=2;DB;DP=180;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.24;SB=-2.453e+03;SOR=1.373;VQSLOD=5.43;culprit=DP GT:AD:DP:GQ:PL 1/1:0,180:180:99:5472,403,0 1 5937413 rs3747988 A C 4607.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.538;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=2.795;HaplotypeScore=1.6648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.98;ReadPosRankSum=0.077;SB=-1.921e+03;SOR=1.798;VQSLOD=1.99;culprit=DP GT:AD:DP:GQ:PL 1/1:2,157:159:99:4636,317,0 1 5939544 rs11121915 T G 1914.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.796;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.39;ReadPosRankSum=0.000;SB=-9.840e+02;SOR=0.428;VQSLOD=7.80;culprit=FS GT:AD:DP:GQ:PL 1/1:1,62:63:99:1943,141,0 1 5948677 rs2282281 G A 1133.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.64;SB=-6.670e+02;SOR=0.859;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:84:1162,84,0 1 5964799 rs375416303 C A 1370.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-0.954;SB=-7.060e+02;SOR=0.787;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 0/1:94,52:146:99:1399,0,2411 1 5964991 rs3737234 T C 1409.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.79;SB=-2.870e+02;SOR=3.109;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1438,114,0 1 6027167 rs875574 C A 656.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.56;SB=-1.971e+02;SOR=2.030;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:51:685,51,0 1 6027252 rs875573 A G 1378.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.14;SB=-6.220e+02;SOR=1.473;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1407,108,0 1 6029086 . CA C 543.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.351;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQ0=0;MQRankSum=0.463;QD=18.12;RPA=15,14;RU=A;ReadPosRankSum=1.965;SB=-1.410e+02;SOR=0.892;STR;VQSLOD=2.25;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,28:33:36:529,36,0 1 6038583 rs4908639 G C 1273.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.94;SB=-4.176e+01;SOR=5.728;VQSLOD=4.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:99:1302,102,0 1 6145365 rs2294936 A G 880.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.871;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=1.153;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=0.534;SB=-2.130e+02;SOR=0.446;VQSLOD=9.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,33:75:99:909,0,1245 1 6145465 rs7512313 T G 541.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=0.00;SOR=5.421;VQSLOD=7.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:570,42,0 1 6147407 rs4908763 C T 203.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.001;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.696;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.86;ReadPosRankSum=0.063;SB=-6.700e+01;SOR=0.136;VQSLOD=8.74;culprit=QD GT:AD:DP:GQ:PL 0/1:14,9:23:99:232,0,443 1 6154417 rs2294932 C T 453.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.929;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=-0.941;SB=-1.300e+02;SOR=0.936;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:11,17:28:99:482,0,233 1 6155332 rs1555144 T C 531.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.090;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=2.078;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.11;ReadPosRankSum=-1.604;SB=-1.000e+02;SOR=0.314;VQSLOD=9.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,19:33:99:560,0,476 1 6157221 rs2235791 C T 277.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=5.119;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.37;ReadPosRankSum=0.000;SB=-1.765e+00;SOR=3.258;VQSLOD=5.48;culprit=FS GT:AD:DP:GQ:PL 0/1:4,9:13:90:306,0,90 1 6157434 rs2311802 C T 1845.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.205;SB=-5.540e+02;SOR=0.723;VQSLOD=8.86;culprit=FS GT:AD:DP:GQ:PL 0/1:65,63:128:99:1874,0,1772 1 6158562 rs2229002 A G 2777.77 PASS AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.06;SB=-1.794e+03;SOR=0.754;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,99:99:99:2806,208,0 1 6162054 rs6696489 T C 2121.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.22;SB=-5.780e+02;SOR=2.303;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2150,157,0 1 6170353 rs2281303 C T 2248.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.43;SB=-3.900e+02;SOR=3.258;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2277,175,0 1 6170424 rs78789357 CG C 7692.73 PASS AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.44;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=-2.814e+03;SOR=1.609;VQSLOD=5.21;culprit=DP GT:AD:DP:GQ:PL 1/1:0,172:173:99:7730,518,0 1 6170699 rs4908780 C G 597.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=0.00;SOR=5.670;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:626,48,0 1 6172875 rs4908515 G A 630.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.47;SB=0.00;SOR=5.784;VQSLOD=8.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:659,51,0 1 6173649 rs2785580 A G 454.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=-4.176e+01;SOR=3.767;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:483,36,0 1 6184092 rs2843493 A G 784.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.32;SB=-5.300e+02;SOR=1.044;VQSLOD=5.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:32:57:813,57,0 1 6184192 rs2273041 A G 595.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SB=-2.001e+02;SOR=2.200;VQSLOD=5.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:45:624,45,0 1 6184649 rs150627163 G A 1005.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.272;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=8.926;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.73;ReadPosRankSum=0.162;SB=-2.120e+02;SOR=1.833;VQSLOD=4.31;culprit=FS GT:AD:DP:GQ:PL 0/1:40,39:79:99:1034,0,1180 1 6184920 rs2273038 C G 417.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=-1.583e+02;SOR=1.765;VQSLOD=5.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:446,36,0 1 6185064 rs55930553 G A 1835.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-7.110e+02;SOR=1.733;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1864,138,0 1 6185532 rs2273037 G A 2998.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;SB=-1.094e+03;SOR=1.790;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:3027,229,0 1 6188044 rs3215558 TG T 839.73 PASS AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;RPA=6,5;RU=G;SB=0.00;SOR=6.439;STR;VQSLOD=7.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:72:877,72,0 1 6188377 rs72632513 G A 1468.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.64;SB=-1.981e+02;SOR=3.865;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1497,120,0 1 6188546 rs2273034 G A 2121.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.88;SB=-8.060e+02;SOR=1.965;VQSLOD=4.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2150,160,0 1 6188779 rs2273033 G C 2365.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=-1.170e+03;SOR=1.240;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2394,184,0 1 6191632 rs2235790 C T 1024.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.532;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=4.339;HaplotypeScore=1.8401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-2.326;SB=-3.360e+02;SOR=1.179;VQSLOD=6.82;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:46,40:86:99:1053,0,1300 1 6194347 rs3765452 T G 1104.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.895;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.870;HaplotypeScore=1.9329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-1.285;SB=-4.870e+02;SOR=0.887;VQSLOD=7.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,41:80:99:1133,0,1031 1 6195024 rs2746067 C T 1214.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.76;SB=-4.076e+01;SOR=5.670;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:35:99:1243,102,0 1 6195493 rs2250504 G A 603.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.95;SB=-4.076e+01;SOR=4.294;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:632,48,0 1 6196869 rs2250358 A G 2733.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.364;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=3.597;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.42;ReadPosRankSum=0.657;SB=-1.436e+03;SOR=0.684;VQSLOD=4.93;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,86:88:99:2762,177,0 1 6196943 rs2746066 A G 2620.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-1.291e+03;SOR=1.013;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2649,196,0 1 6196951 rs2785582 T A 2486.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-1.113e+03;SOR=1.013;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2515,187,0 1 6197092 rs17436753 A G 688.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.01;SB=0.00;SOR=5.892;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:717,54,0 1 6197107 rs58155258 G A 517.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=0.00;SOR=5.421;VQSLOD=8.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:546,42,0 1 6204001 . G A 892.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.228;DP=76;Dels=0.00;ExcessHet=3.0103;FS=2.359;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.75;ReadPosRankSum=-1.096;SB=-1.850e+02;SOR=1.136;VQSLOD=6.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,33:76:99:921,0,1038 1 6204222 rs17489787 C G 2565.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.030;DB;DP=189;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.125;SB=-1.423e+03;SOR=0.672;VQSLOD=7.54;culprit=DP GT:AD:DP:GQ:PL 0/1:89,100:189:99:2594,0,2497 1 6204266 rs9435102 A G 4294.77 PASS AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.22;SB=-1.859e+03;SOR=1.454;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,147:147:99:4323,319,0 1 6209265 rs41279496 G T 277.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.37;ReadPosRankSum=0.676;SB=-4.076e+01;SOR=0.941;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 0/1:3,10:13:47:306,0,47 1 6209363 rs12565328 T C 718.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.375;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.491;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.54;ReadPosRankSum=0.895;SB=-3.670e+02;SOR=0.425;VQSLOD=8.91;culprit=QD GT:AD:DP:GQ:PL 0/1:10,25:35:99:747,0,210 1 6210970 rs12564469 G A 153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.281;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.640;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.96;ReadPosRankSum=-0.542;SB=-4.500e+01;SOR=1.473;VQSLOD=4.94;culprit=QD GT:AD:DP:GQ:PL 0/1:23,8:31:99:182,0,529 1 6211183 rs9434711 G A 489.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.407;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=0.545;SB=-1.230e+02;SOR=0.892;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:18,17:35:99:518,0,530 1 6212843 rs2311388 T C 101.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.777;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.85;ReadPosRankSum=0.273;SB=-3.200e+01;SOR=0.346;VQSLOD=9.70;culprit=QD GT:AD:DP:GQ:PL 0/1:15,6:21:99:130,0,469 1 6215047 rs12034457 A G 375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.551;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=0.484;SB=-1.110e+02;SOR=0.566;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:13,15:28:99:404,0,333 1 6215048 rs12035285 T C 344.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.576;SB=-1.633e+02;SOR=0.566;VQSLOD=9.29;culprit=FS GT:AD:DP:GQ:PL 0/1:13,15:28:99:373,0,336 1 6215540 rs77219692 C A 195.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=-0.102;SB=-4.276e+01;SOR=0.180;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:224,0,244 1 6313938 rs12735670 C T 1530.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;SB=-5.980e+02;SOR=1.708;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1559,120,0 1 6314349 rs6696630 A G 1013.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.79;SB=-1.741e+02;SOR=2.985;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:78:1042,78,0 1 6314479 rs12740426 C T 546.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-1.195e+02;SOR=2.179;VQSLOD=7.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:575,42,0 1 6314822 rs11590458 T C 2921.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=-1.709e+03;SOR=0.693;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:2950,220,0 1 6399711 rs2235692 A G 1338.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.781;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.8388;MLEAC=1;MLEAF=0.500;MQ=60.11;MQ0=0;MQRankSum=-1.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=1.543;SB=-3.960e+02;SOR=0.750;VQSLOD=2.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,49:97:99:1367,0,1182 1 6530965 . C CG 1370.73 PASS AC=2;AF=1.00;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=30.08;RPA=3,4;RU=G;SB=-5.880e+02;SOR=1.061;STR;VQSLOD=4.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:39:99:1408,108,0 1 6579607 rs1556035 C T 2212.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.50;SB=-8.990e+02;SOR=1.771;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2241,163,0 1 6585804 rs13513 C T 375.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.16;SB=0.00;SOR=4.977;VQSLOD=8.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:404,33,0 1 6586070 rs7548042 C T 1863.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.12;SB=-8.980e+02;SOR=1.306;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:1892,138,0 1 6591937 rs932112 T C 944.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.74;SB=-1.673e+02;SOR=3.258;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:973,72,0 1 6601773 rs3761927 T C 364.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.56;SB=0.00;SOR=4.804;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:393,30,0 1 6609559 rs11122091 C A 802.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.45;SB=-6.997e+01;SOR=4.091;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:831,66,0 1 6609851 rs10864622 A G 1760.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.01;SB=-5.160e+02;SOR=2.179;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1789,132,0 1 6609896 rs11579888 G A 991.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-1.603e+02;SOR=3.056;VQSLOD=6.07;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,31:31:78:1020,78,0 1 6610366 rs2063805 T C 699.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-4.076e+01;SOR=4.514;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:728,54,0 1 6610382 rs2063806 C T 836.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-9.951e+01;SOR=3.611;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:69:865,69,0 1 6614391 rs6693391 A C 660.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;SB=-3.180e+02;SOR=0.914;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:689,51,0 1 6614415 rs6693400 A G 657.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-2.710e+02;SOR=1.292;VQSLOD=4.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:686,54,0 1 6614535 rs4908923 G A 891.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=-4.850e+02;SOR=0.836;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:69:920,69,0 1 6614653 rs4908924 C G 535.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.49;SB=-1.105e+02;SOR=2.584;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:564,42,0 1 6615690 rs925745 A G 963.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.23;SB=-1.791e+02;SOR=2.910;VQSLOD=7.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:992,72,0 1 6615695 rs925744 C T 925.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.06;SB=-1.603e+02;SOR=3.258;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:954,72,0 1 6631319 rs11122096 G A 792.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.56;SB=0.00;SOR=6.184;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:821,63,0 1 6631352 rs34514006 TC T 350.73 PASS AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.88;RPA=7,6;RU=C;SB=0.00;SOR=4.977;STR;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:12:33:388,33,0 1 6635231 rs10864628 A G 2941.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SB=-1.325e+03;SOR=1.312;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2970,220,0 1 6635306 rs34160967 G A 4070.77 PASS AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.15;SB=-2.014e+03;SOR=1.170;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,135:135:99:4099,304,0 1 6636461 rs17492553 C T 4558.77 PASS AC=2;AF=1.00;AN=2;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.41;SB=-2.471e+03;SOR=1.171;VQSLOD=5.52;culprit=DP GT:AD:DP:GQ:PL 1/1:0,155:155:99:4587,337,0 1 6637313 rs4908931 A G 334.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=-3.876e+01;SOR=3.258;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:363,27,0 1 6646959 rs3833475 GCCTGCCTTC G 3014.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.095;DB;DP=76;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.500;MQ=60.28;MQ0=0;MQRankSum=1.496;POSITIVE_TRAIN_SITE;QD=16.21;RPA=2,1;RU=CCTGCCTTC;ReadPosRankSum=1.113;SB=-1.500e+03;SOR=0.399;STR;VQSLOD=0.146;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,30:76:99:3052,0,3443 1 6649228 rs2229330 T G 545.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.720;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=3.073;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=1.004;SB=-4.400e+01;SOR=1.347;VQSLOD=7.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,20:51:99:574,0,831 1 6679848 rs2072948 C T 476.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.322;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=1.869;SB=-3.580e+02;SOR=0.700;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:21,23:44:99:505,0,597 1 6681375 rs6695474 C T 1824.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.810;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3178;MLEAC=1;MLEAF=0.500;MQ=59.99;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.313;SB=-7.090e+02;SOR=0.556;VQSLOD=7.92;culprit=FS GT:AD:DP:GQ:PL 0/1:57,70:129:99:1853,0,1540 1 6681744 rs3747994 C T 672.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.743;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.583;HaplotypeScore=1.6918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=-1.292;SB=-1.250e+02;SOR=0.377;VQSLOD=10.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,25:53:99:701,0,794 1 6692273 rs60447511 C CA 184.75 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;RPA=14,15;RU=A;SB=-8.651e+01;SOR=1.179;STR;VQSLOD=4.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,8:10:24:222,24,0 1 6693918 . C T 261.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.203;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.38;ReadPosRankSum=0.410;SB=0.00;SOR=0.368;VQSLOD=8.42;culprit=FS GT:AD:DP:GQ:PL 0/1:14,9:23:99:290,0,459 1 6695802 rs6577583 A G 1423.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.883;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=-2.197;SB=-5.500e+02;SOR=0.691;VQSLOD=8.93;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:60,54:114:99:1452,0,1665 1 6704635 rs200458 A G 1729.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=2.211;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=1.030;SB=-1.005e+03;SOR=0.618;VQSLOD=9.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,68:131:99:1758,0,1612 1 6713114 rs2235564 C T 380.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.172;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.821;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=0.153;SB=-1.060e+02;SOR=0.148;VQSLOD=10.33;culprit=FS GT:AD:DP:GQ:PL 0/1:15,14:29:99:409,0,438 1 6866978 rs660880 G A 1133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.694;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.317;HaplotypeScore=5.2306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=0.089;SB=-1.650e+02;SOR=1.074;VQSLOD=6.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,39:65:99:1162,0,617 1 7151479 rs72640073 T C 1083.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.991;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.009;HaplotypeScore=2.5584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-0.695;SB=-5.910e+02;SOR=1.000;VQSLOD=7.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,41:74:99:1112,0,799 1 7166332 rs72857584 G A 302.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.808;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.222;HaplotypeScore=1.6498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=-0.165;SB=-9.732e-01;SOR=3.014;VQSLOD=5.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,10:22:99:331,0,351 1 7202190 rs970973 T C 1135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.310;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=-1.682;SB=-5.600e+02;SOR=0.681;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 0/1:54,43:97:99:1164,0,1278 1 7289777 rs4243824 G A 797.80 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.515;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.59;ReadPosRankSum=2.122;SB=-4.495e+02;SOR=0.997;VQSLOD=8.34;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 1/1:2,28:30:21:826,21,0 1 7527996 rs1201529 T C 246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.901;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=-0.678;SB=-1.170e+02;SOR=0.495;VQSLOD=10.14;culprit=FS GT:AD:DP:GQ:PL 0/1:11,12:23:99:275,0,312 1 7700352 rs4072987 G C 168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.627;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.25;ReadPosRankSum=-0.028;SB=-1.765e+00;SOR=0.495;VQSLOD=9.16;culprit=QD GT:AD:DP:GQ:PL 0/1:20,7:27:99:197,0,629 1 7700353 rs34766132 G A 170.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.32;ReadPosRankSum=-0.028;SB=-1.765e+00;SOR=0.495;VQSLOD=9.28;culprit=QD GT:AD:DP:GQ:PL 0/1:20,7:27:99:199,0,684 1 7700674 rs12743421 C T 840.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.580;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=3.645;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=-1.008;SB=-5.500e+01;SOR=1.552;VQSLOD=6.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,28:60:99:869,0,895 1 7737799 rs3011926 A G 1814.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.421;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.765;HaplotypeScore=5.6630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=-0.230;SB=-5.720e+02;SOR=0.846;VQSLOD=7.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,61:116:99:1843,0,1405 1 7737951 rs61526491 T C 70.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.90;ReadPosRankSum=-0.651;SB=0.00;SOR=0.269;VQSLOD=9.24;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:99:99,0,283 1 7740287 . G A 228.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;DP=19;Dels=0.00;ExcessHet=3.0103;FS=1.984;HaplotypeScore=1.8737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.04;ReadPosRankSum=-0.867;SB=-1.740e+02;SOR=0.223;VQSLOD=8.34;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,11:19:99:257,0,208 1 7796641 rs2071985 A G 503.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.164;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=0.995;SB=-1.260e+02;SOR=0.616;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:15,18:33:99:532,0,399 1 7797734 rs1417986 T A 954.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=4.277;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=1.797;SB=-1.510e+02;SOR=1.387;VQSLOD=6.81;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:33,30:63:99:983,0,981 1 7807897 rs12133253 A G 704.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=1.980;HaplotypeScore=5.8799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.92;ReadPosRankSum=-0.215;SB=-3.690e+02;SOR=0.446;VQSLOD=8.75;culprit=QD GT:AD:DP:GQ:PL 0/1:58,31:89:99:733,0,1545 1 7807966 rs34083763 GT G 72.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.46;RPA=13,12;RU=T;ReadPosRankSum=-0.337;SB=-2.044e+00;SOR=0.836;STR;VQSLOD=7.19;culprit=QD GT:AD:DP:GQ:PL 0/1:14,7:32:99:110,0,228 1 7809728 . C CT 94.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;DP=20;ExcessHet=3.0103;FS=3.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.99;RPA=12,13;RU=T;ReadPosRankSum=0.910;SB=-3.077e+01;SOR=0.105;STR;VQSLOD=6.87;culprit=QD GT:AD:DP:GQ:PL 0/1:11,8:20:99:132,0,197 1 7811014 rs1573753 G A 402.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.742;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.410;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=-0.522;SB=-1.150e+02;SOR=1.456;VQSLOD=5.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,20:41:99:431,0,619 1 7811215 rs10779689 A G 1131.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.157;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=1.814;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=-0.372;SB=-7.380e+02;SOR=0.554;VQSLOD=9.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,47:83:99:1160,0,1020 1 7812398 rs9919223 A G 249.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.84;ReadPosRankSum=-1.740;SB=0.00;SOR=1.329;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:278,0,155 1 7826313 . A AT 632.73 PASS AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.36;RPA=9,10;RU=T;SB=-6.197e+01;SOR=4.091;STR;VQSLOD=4.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:71:670,71,0 1 7826347 rs697672 C T 1193.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-2.361e+02;SOR=2.774;VQSLOD=7.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:90:1222,90,0 1 7831352 rs72853889 C A 240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.820;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.578;SB=-1.210e+02;SOR=0.330;VQSLOD=9.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,8:20:99:269,0,287 1 7839405 rs697677 G T 45.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.16;ReadPosRankSum=-1.630;SB=0.00;SOR=0.180;VQSLOD=8.95;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:74:74,0,250 1 7845050 . C G 352.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.690;HaplotypeScore=6.0491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.07;ReadPosRankSum=-1.044;SB=-9.600e+01;SOR=1.314;VQSLOD=5.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,13:27:99:381,0,324 1 7845695 rs228729 T C 1062.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.26;SB=-3.210e+02;SOR=2.303;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:78:1091,78,0 1 7847362 . C CT 1185.73 PASS AC=2;AF=1.00;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.40;RPA=6,7;RU=T;SB=-9.551e+01;SOR=4.461;STR;VQSLOD=4.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1223,117,0 1 7847529 rs2859390 A G 1165.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=2.544;HaplotypeScore=3.6678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=-0.212;SB=-4.790e+02;SOR=0.993;VQSLOD=7.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,47:110:99:1194,0,1837 1 7847614 rs697685 G A 407.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.281;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.84;ReadPosRankSum=0.117;SB=-1.190e+02;SOR=0.730;VQSLOD=8.85;culprit=QD GT:AD:DP:GQ:PL 0/1:35,17:52:99:436,0,1009 1 7861304 rs707465 T C 721.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.085;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.763;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=-1.185;SB=-1.420e+02;SOR=1.398;VQSLOD=6.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,27:40:99:750,0,338 1 7861345 rs488728 G A 189.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-0.984;SB=0.00;SOR=0.495;VQSLOD=8.86;culprit=FS GT:AD:DP:GQ:PL 0/1:9,7:16:99:218,0,316 1 7863735 rs149164395 CTTA C 2238.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;DB;DP=86;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.34;RPA=2,1;RU=TTA;ReadPosRankSum=-0.396;SB=-5.610e+02;SOR=0.512;STR;VQSLOD=6.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,45:86:99:2276,0,2130 1 7869915 rs228668 G C 1774.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.87;SB=-4.950e+02;SOR=2.303;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1803,132,0 1 7870048 rs228669 T C 1148.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-0.456;SB=-7.830e+02;SOR=0.709;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:57,49:106:99:1177,0,1370 1 7870144 rs228670 A C 2586.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.59;SB=-9.480e+02;SOR=1.833;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2615,190,0 1 7870715 rs79372391 A C 774.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.841;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=5.047;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.45;ReadPosRankSum=2.061;SB=-2.901e+01;SOR=2.119;VQSLOD=5.37;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:19,23:42:99:803,0,544 1 7880469 rs228691 A G 404.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.059;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=10.086;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.49;ReadPosRankSum=0.656;SB=-9.732e-01;SOR=4.125;VQSLOD=4.53;culprit=FS GT:AD:DP:GQ:PL 0/1:6,12:18:99:433,0,174 1 7886424 rs697693 G A 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.460;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-0.233;SB=-1.765e+00;SOR=1.371;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:166,0,197 1 7887248 rs2859387 G A 2839.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.21;ReadPosRankSum=-0.737;SB=-1.687e+03;SOR=0.312;VQSLOD=5.76;culprit=FS GT:AD:DP:GQ:PL 1/1:1,93:94:99:2868,177,0 1 7887493 rs228696 T C 2906.77 PASS AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.36;SB=-1.658e+03;SOR=0.842;VQSLOD=6.65;culprit=DP GT:AD:DP:GQ:PL 1/1:0,99:99:99:2935,223,0 1 7887605 rs17031614 G A 1831.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.240;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=10.574;HaplotypeScore=3.7855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.616;SB=-1.203e+03;SOR=0.260;VQSLOD=5.06;culprit=FS GT:AD:DP:GQ:PL 0/1:66,74:140:99:1860,0,1633 1 7889804 rs228701 C G 1789.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-2.600e+02;SOR=3.486;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1818,132,0 1 7890264 rs1773135 A G 3269.77 PASS AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.03;SB=-1.144e+03;SOR=1.887;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,99:99:99:3298,241,0 1 7906476 rs172932 G T 3141.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6147;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-1.558e+03;SOR=1.279;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:106:99:3170,229,0 1 7906958 rs376690327 G GAGAA 1155.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.35;RPA=2,3;RU=AGAA;ReadPosRankSum=-0.346;SB=-3.380e+02;SOR=0.786;STR;VQSLOD=8.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,21:60:99:1193,0,1874 1 7907007 rs697694 G A 642.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=1.631;SB=-1.000e+02;SOR=0.502;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 0/1:13,23:36:99:671,0,343 1 7907971 rs707473 C A 353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.005;DB;DP=29;Dels=0.03;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=1.449;SB=-9.200e+01;SOR=0.693;VQSLOD=8.66;culprit=FS GT:AD:DP:GQ:PL 0/1:14,14:28:99:382,0,385 1 7909737 rs2890565 C T 670.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.400;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=-0.440;SB=-3.160e+02;SOR=0.643;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 0/1:31,30:61:99:699,0,852 1 7913184 . CA C 301.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=0.000;QD=6.16;RPA=16,15;RU=A;ReadPosRankSum=0.721;SB=-4.711e+01;SOR=1.022;STR;VQSLOD=6.85;culprit=QD GT:AD:DP:GQ:PL 0/1:24,25:57:99:339,0,409 1 7998963 rs226476 T G 2847.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-1.069e+03;SOR=1.968;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,92:92:99:2876,208,0 1 8029494 rs2641116 T G 319.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.766;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=10.139;HaplotypeScore=16.0997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=0.020;SB=-1.980e+02;SOR=0.942;VQSLOD=5.44;culprit=FS GT:AD:DP:GQ:PL 0/1:15,16:32:99:348,0,366 1 8029509 rs2640906 G A 324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=12.443;HaplotypeScore=5.7188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=1.360;SB=-1.180e+02;SOR=1.627;VQSLOD=4.89;culprit=FS GT:AD:DP:GQ:PL 0/1:13,14:28:99:353,0,393 1 8029510 rs2641117 G A 324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=8.557;HaplotypeScore=4.9301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=1.638;SB=-8.000e+01;SOR=1.673;VQSLOD=5.32;culprit=FS GT:AD:DP:GQ:PL 0/1:15,14:29:99:353,0,323 1 8031054 rs389298 G A 1931.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;DB;DP=161;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=-1.537;SB=-1.221e+03;SOR=0.667;VQSLOD=7.29;culprit=DP GT:AD:DP:GQ:PL 0/1:80,81:161:99:1960,0,2121 1 8037496 rs161807 G A 635.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.163;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=0.787;SB=-3.230e+02;SOR=0.798;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:35,24:59:99:664,0,872 1 8064578 rs72634228 A G 353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.745;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.782;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=0.251;SB=-1.930e+02;SOR=0.418;VQSLOD=5.32;culprit=FS GT:AD:DP:GQ:PL 0/1:17,13:30:99:382,0,475 1 8384268 rs6702047 T C 1641.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=-6.560e+02;SOR=1.567;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1670,123,0 1 8390384 rs56125713 G C 2522.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.33;SB=-1.497e+03;SOR=1.005;VQSLOD=5.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2551,181,0 1 8390495 rs1058619 A G 3808.77 PASS AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.3307;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=-2.086e+03;SOR=1.232;VQSLOD=5.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,131:134:99:3837,298,0 1 8395560 rs7535752 G T 2795.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.74;SB=-1.540e+03;SOR=1.143;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:2824,205,0 1 8404169 rs6685844 T A 340.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.08;SB=-3.976e+01;SOR=3.258;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:369,27,0 1 8415418 rs2289733 G A 376.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.796;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=9.232;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.754;SB=-4.800e+01;SOR=2.636;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 0/1:17,13:30:99:405,0,471 1 8418644 rs11121172 C A 1611.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.85;SB=-8.320e+02;SOR=1.022;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1640,120,0 1 8418650 rs1058766 T C 1670.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-9.190e+02;SOR=1.022;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1699,126,0 1 8421092 rs2784735 C T 190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.81;ReadPosRankSum=0.492;SB=-1.210e+02;SOR=0.593;VQSLOD=9.20;culprit=QD GT:AD:DP:GQ:PL 0/1:19,9:28:99:219,0,477 1 8421203 rs13596 T C 890.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.69;SB=-5.460e+02;SOR=0.693;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:69:919,69,0 1 8422676 rs2252865 T C 2159.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.59;SB=-1.113e+03;SOR=1.340;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2188,157,0 1 8424039 rs9628991 C G 48.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.43;ReadPosRankSum=-0.389;SB=0.00;SOR=0.180;VQSLOD=8.90;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:77:77,0,286 1 8425798 rs3765972 C T 240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.636;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.304;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-0.178;SB=-1.080e+02;SOR=0.223;VQSLOD=9.79;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,10:18:99:269,0,242 1 8425900 rs3753275 T C 498.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-0.379;SB=-3.010e+02;SOR=0.693;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:20,20:40:99:527,0,454 1 8526142 rs4908760 G A 639.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=0.476;SB=-4.090e+02;SOR=0.562;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:27,27:54:99:668,0,702 1 8557320 rs7518608 C G 417.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.026;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.665;SB=-2.901e+01;SOR=1.230;VQSLOD=7.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,14:35:99:446,0,614 1 8557691 rs7530745 A C 635.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.595;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=6.145;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.30;ReadPosRankSum=1.205;SB=-1.235e+02;SOR=0.074;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:17,22:39:99:664,0,524 1 8926752 rs2781065 T C 370.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.268;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-0.842;SB=0.00;SOR=0.420;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:17,12:29:99:399,0,576 1 8928125 rs2071412 G T 622.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.688;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.977;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.65;ReadPosRankSum=0.446;SB=-3.010e+02;SOR=0.778;VQSLOD=6.05;culprit=QD GT:AD:DP:GQ:PL 0/1:46,26:72:99:651,0,1247 1 8930369 rs2781060 T C 801.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.063;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=-1.837;SB=-2.710e+02;SOR=0.908;VQSLOD=6.99;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:28,29:57:99:830,0,789 1 8930385 rs2765511 G A 854.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-0.801;SB=-4.290e+02;SOR=0.743;VQSLOD=8.99;culprit=FS GT:AD:DP:GQ:PL 0/1:32,33:65:99:883,0,783 1 8935149 rs2038904 A G 100.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.078;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.03;ReadPosRankSum=0.701;SB=-1.766e+00;SOR=0.434;VQSLOD=8.76;culprit=QD GT:AD:DP:GQ:PL 0/1:19,6:25:99:129,0,663 1 9009444 rs2274328 A C 1492.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.947;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=4.284;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=1.570;SB=-6.530e+02;SOR=1.118;VQSLOD=6.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:76,58:134:99:1521,0,1977 1 9009451 rs2274329 G C 1332.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.374;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=5.798;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=1.369;SB=-5.490e+02;SOR=1.274;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 0/1:71,53:124:99:1361,0,2032 1 9009470 rs2274330 G C 1192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.134;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=7.842;HaplotypeScore=1.6385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=-0.052;SB=-4.080e+02;SOR=1.431;VQSLOD=4.76;culprit=FS GT:AD:DP:GQ:PL 0/1:65,49:114:99:1221,0,1808 1 9009547 rs2274331 C A 394.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.105;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.217;HaplotypeScore=1.9598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.37;ReadPosRankSum=0.734;SB=-9.300e+01;SOR=1.002;VQSLOD=5.73;culprit=QD GT:AD:DP:GQ:PL 0/1:45,17:62:99:423,0,1244 1 9011586 rs3765968 T G 2267.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.273;DB;DP=182;Dels=0.00;ExcessHet=3.0103;FS=4.310;HaplotypeScore=3.7242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.059;SB=-1.175e+03;SOR=0.751;VQSLOD=6.68;culprit=DP GT:AD:DP:GQ:PL 0/1:95,87:182:99:2296,0,2415 1 9011627 rs3765967 G A 2333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;DB;DP=172;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.7886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-1.506;SB=-1.269e+03;SOR=0.762;VQSLOD=8.05;culprit=DP GT:AD:DP:GQ:PL 0/1:85,86:172:99:2362,0,2083 1 9011722 rs3765966 G T 1512.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.735;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=6.992;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=0.703;SB=-8.000e+02;SOR=0.277;VQSLOD=8.48;culprit=FS GT:AD:DP:GQ:PL 0/1:41,57:98:99:1541,0,1144 1 9017091 rs2274332 C T 356.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.656;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=1.227;SB=-3.000e+01;SOR=0.641;VQSLOD=9.96;culprit=FS GT:AD:DP:GQ:PL 0/1:20,12:32:99:385,0,629 1 9017204 rs2274333 A G 1804.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.862;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=2.430;HaplotypeScore=3.5162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=-0.699;SB=-7.580e+02;SOR=0.456;VQSLOD=8.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:67,67:134:99:1833,0,1957 1 9030964 rs3737665 C T 1991.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.273;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=0.839;SB=-1.014e+03;SOR=0.732;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 0/1:62,78:140:99:2020,0,1544 1 9034421 rs3765964 G A 988.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-5.920e+02;SOR=0.756;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:75:1017,75,0 1 9034598 rs3765963 A G 1916.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-9.880e+02;SOR=1.107;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1945,141,0 1 9034815 rs3831911 C CAGA 1980.73 PASS AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=24.08;RPA=1,2;RU=AGA;SB=-6.720e+02;SOR=1.609;STR;VQSLOD=2.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:36:99:2018,102,0 1 9064609 rs111448504 AG A 918.73 PASS AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.96;RPA=4,3;RU=G;SB=-2.041e+02;SOR=2.494;STR;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:25:72:956,72,0 1 9073801 rs7537425 C T 749.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.061;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.429;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=-0.414;SB=-1.870e+02;SOR=1.069;VQSLOD=7.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,27:61:99:778,0,874 1 9074861 rs12402973 C T 677.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.416;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.146;HaplotypeScore=1.3302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-0.337;SB=-2.200e+02;SOR=1.002;VQSLOD=7.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,27:55:99:706,0,729 1 9074932 rs1556757 G A 258.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.917;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=-0.209;SB=-9.732e-01;SOR=1.721;VQSLOD=6.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,9:24:99:287,0,446 1 9084924 rs2027222 T C 981.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.902;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=5.503;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.93;ReadPosRankSum=0.948;SB=-2.260e+02;SOR=0.189;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:24,34:58:99:1010,0,689 1 9118520 rs138250837 A T 367.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-8.097e+01;SOR=2.670;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:396,30,0 1 9165868 rs1705303 A G 678.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=0.00;SOR=5.892;VQSLOD=7.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:707,54,0 1 9299947 rs2268176 T G 577.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.315;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=0.353;SB=-6.800e+01;SOR=0.941;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:17,21:38:99:606,0,512 1 9305445 rs34603401 A C 2324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.359;DB;DP=197;Dels=0.00;ExcessHet=3.0103;FS=0.527;HaplotypeScore=6.2040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-1.731;SB=-1.378e+03;SOR=0.769;VQSLOD=6.42;culprit=DP GT:AD:DP:GQ:PL 0/1:111,86:197:99:2353,0,2816 1 9306849 rs2310925 T C 845.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.683;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.79;ReadPosRankSum=1.335;SB=-9.500e+01;SOR=0.631;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:17,28:45:99:874,0,477 1 9307033 rs7524046 G A 2834.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;DB;DP=232;Dels=0.00;ExcessHet=3.0103;FS=2.926;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=0.667;SB=-1.436e+03;SOR=0.902;VQSLOD=6.33;culprit=DP GT:AD:DP:GQ:PL 0/1:122,110:232:99:2863,0,2985 1 9307138 rs11121350 T C 2170.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.285;DB;DP=189;Dels=0.00;ExcessHet=3.0103;FS=6.409;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=0.499;SB=-8.910e+02;SOR=1.131;VQSLOD=5.72;culprit=DP GT:AD:DP:GQ:PL 0/1:101,88:189:99:2199,0,2615 1 9307230 rs12032814 T A 860.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.234;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQ0=0;MQRankSum=-1.018;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-1.078;SB=-1.640e+02;SOR=0.593;VQSLOD=3.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,31:59:99:889,0,833 1 9307308 . T TG 590.73 PASS AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;QD=33.40;RPA=1,2;RU=G;SB=0.00;SOR=5.421;STR;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:628,42,0 1 9323463 . C CTGAGGCAG 844.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.05;RPA=1,2;RU=TGAGGCAG;ReadPosRankSum=0.491;SB=-9.732e-01;SOR=0.892;STR;VQSLOD=7.60;culprit=FS GT:AD:DP:GQ:PL 0/1:26,9:35:99:882,0,2619 1 9323910 rs6688832 G A 1488.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.556;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-0.460;SB=-7.990e+02;SOR=0.641;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:72,53:125:99:1517,0,1842 1 9324213 rs17368528 C T 725.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.373;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.876;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=-0.400;SB=-4.250e+02;SOR=0.841;VQSLOD=7.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,31:77:99:754,0,1088 1 9324571 rs9434742 T C 1067.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=1.645;HaplotypeScore=2.6641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=1.485;SB=-5.300e+02;SOR=0.917;VQSLOD=7.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,42:96:99:1096,0,1336 1 9324670 rs9434743 A G 1280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.745;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.781;SB=-7.460e+02;SOR=0.866;VQSLOD=7.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,48:102:99:1309,0,1408 1 9416151 rs9435243 G A 3351.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-12.797;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=2.774;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-0.126;SB=-1.948e+03;SOR=0.551;VQSLOD=6.70;culprit=DP GT:AD:DP:GQ:PL 0/1:123,127:250:99:3380,0,3136 1 9416852 rs12760778 A G 485.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.730;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=5.736;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=-1.162;SB=-2.180e+02;SOR=0.159;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:24,21:45:99:514,0,719 1 9658465 rs9430181 T G 3398.77 PASS AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.26;SB=-5.720e+02;SOR=3.383;VQSLOD=1.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:93:99:3427,247,0 1 9658707 rs9430182 G A 4132.77 PASS AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.73;SB=-6.150e+02;SOR=3.395;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,119:119:99:4161,313,0 1 9658809 rs9430183 A G 642.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=0.00;SOR=5.784;VQSLOD=9.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:671,51,0 1 9670483 rs4244632 T A 1082.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=-4.450e+02;SOR=1.802;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:81:1111,81,0 1 9670834 rs4926472 C T 2034.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8841;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-9.280e+02;SOR=1.542;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:69:99:2063,150,0 1 9672091 rs4073293 G A 747.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.09;SB=0.00;SOR=6.184;VQSLOD=8.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:776,63,0 1 9714177 rs7511971 G A 1424.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.040;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.660;HaplotypeScore=3.6235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-0.169;SB=-7.830e+02;SOR=0.582;VQSLOD=8.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:73,56:129:99:1453,0,1990 1 9714247 rs9430611 A G 2212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=1.228;HaplotypeScore=8.4098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-0.223;SB=-1.239e+03;SOR=0.576;VQSLOD=7.26;culprit=DP GT:AD:DP:GQ:PL 0/1:84,85:170:99:2241,0,2188 1 9714538 . GT G 547.73 PASS AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.43;SB=-3.976e+01;SOR=4.407;VQSLOD=5.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:34:54:585,54,0 1 9714540 . G GAGGCCAGACC 2131.73 PASS AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.69;SB=-1.278e+02;SOR=4.407;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:2169,54,0 1 9714542 rs201016347 G C 629.94 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.082;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=35.00;ReadPosRankSum=1.350;SB=-4.176e+01;SOR=2.948;VQSLOD=4.15;culprit=FS GT:AD:DP:GQ:PL 1/1:1,17:18:14:658,14,0 1 9714544 rs201683448 A G 713.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.82;SB=-4.376e+01;SOR=4.407;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:742,54,0 1 9770690 rs112956706 C CAG 601.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.178;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.75;RPA=11,12;RU=AG;ReadPosRankSum=1.618;SB=-7.800e+01;SOR=1.136;STR;VQSLOD=7.59;culprit=FS GT:AD:DP:GQ:PL 0/1:12,17:46:99:639,0,357 1 9779871 rs9430220 T C 469.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.384;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.37;ReadPosRankSum=-0.187;SB=0.00;SOR=1.508;VQSLOD=9.20;culprit=FS GT:AD:DP:GQ:PL 0/1:7,14:21:99:498,0,205 1 9792105 . G GA 399.75 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.627;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.51;RPA=9,10;RU=A;ReadPosRankSum=-1.123;SB=-5.997e+01;SOR=1.981;STR;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:1,16:22:23:437,23,0 1 9816620 rs6680090 T C 1371.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.58;SB=-7.440e+02;SOR=0.963;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1400,102,0 1 10057203 rs3811458 G T 136.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=1.738;SB=-3.300e+01;SOR=0.892;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:165,0,163 1 10132493 . C CT 152.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQ0=0;MQRankSum=0.431;QD=12.73;RPA=11,12;RU=T;ReadPosRankSum=0.984;SB=-7.121e+01;SOR=0.446;STR;VQSLOD=2.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,8:12:65:190,0,65 1 10190884 rs2295294 A T 539.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.241;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.212;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-1.393;SB=-1.910e+02;SOR=1.480;VQSLOD=6.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,23:49:99:568,0,671 1 10218377 rs2273298 A G 342.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.666;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.79;ReadPosRankSum=-0.621;SB=-1.010e+02;SOR=0.469;VQSLOD=10.02;culprit=QD GT:AD:DP:GQ:PL 0/1:24,15:39:99:371,0,691 1 10218439 rs2273299 T C 928.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.158;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=5.881;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=-1.043;SB=-3.130e+02;SOR=1.402;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 0/1:47,38:85:99:957,0,1160 1 10238770 rs7546642 A G 1138.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.759;HaplotypeScore=3.7074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=0.789;SB=-6.760e+02;SOR=0.668;VQSLOD=9.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,45:97:99:1167,0,1316 1 10334924 rs17396973 C T 216.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.03;ReadPosRankSum=0.077;SB=-6.200e+01;SOR=0.582;VQSLOD=8.50;culprit=QD GT:AD:DP:GQ:PL 0/1:18,9:27:99:245,0,462 1 10335315 rs6685773 G A 860.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-2.181e+02;SOR=2.226;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:30:72:889,72,0 1 10342352 rs3748575 C T 244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.431;SB=-4.076e+01;SOR=0.184;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:273,0,302 1 10342629 rs3748576 G A 237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.036;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=12.415;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.49;ReadPosRankSum=0.232;SB=-1.621e+02;SOR=0.027;VQSLOD=5.08;culprit=FS GT:AD:DP:GQ:PL 0/1:16,12:28:99:266,0,527 1 10381802 . T C 1168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-0.528;SB=-5.950e+02;SOR=0.711;VQSLOD=7.62;culprit=FS GT:AD:DP:GQ:PL 0/1:36,46:82:99:1197,0,882 1 10384711 . C CT 322.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;DP=31;ExcessHet=3.0103;FS=4.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.76;RPA=13,14;RU=T;ReadPosRankSum=0.645;SB=-9.833e+01;SOR=0.129;STR;VQSLOD=8.36;culprit=FS GT:AD:DP:GQ:PL 0/1:14,16:31:99:360,0,237 1 10386506 rs12135774 T C 1058.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.095;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.504;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=0.796;SB=-4.510e+02;SOR=0.346;VQSLOD=10.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,42:79:99:1087,0,1029 1 10402009 rs33942183 CA C 81.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQ0=0;MQRankSum=0.473;POSITIVE_TRAIN_SITE;QD=7.43;RPA=17,16;RU=A;ReadPosRankSum=-0.361;SB=0.00;SOR=1.270;STR;VQSLOD=3.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,7:11:41:119,0,41 1 10408837 . A AT 300.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQ0=0;MQRankSum=-0.915;QD=8.59;RPA=14,15;RU=T;ReadPosRankSum=-0.198;SB=0.00;SOR=0.749;STR;VQSLOD=2.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,18:50:99:338,0,269 1 10412636 rs4846215 A T 235.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.804;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.114;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=-0.060;SB=-2.402e+01;SOR=1.508;VQSLOD=6.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,9:24:99:264,0,447 1 10421878 rs12125492 A G 2637.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.040;DB;DP=204;Dels=0.00;ExcessHet=3.0103;FS=1.774;HaplotypeScore=1.9156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=0.535;SB=-1.309e+03;SOR=0.544;VQSLOD=7.33;culprit=DP GT:AD:DP:GQ:PL 0/1:98,106:204:99:2666,0,2508 1 10425117 rs34161257 AT A 277.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=1.493;POSITIVE_TRAIN_SITE;QD=9.92;RPA=8,7;RU=T;ReadPosRankSum=-0.552;SB=-9.500e+01;SOR=0.430;STR;VQSLOD=3.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,14:30:99:315,0,345 1 10431132 rs12141192 C T 562.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.588;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.225;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=1.158;SB=-3.110e+02;SOR=0.440;VQSLOD=9.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,25:46:99:591,0,495 1 10431527 rs144313956 C T 100.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=7.830;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.20;ReadPosRankSum=-0.062;SB=-6.597e+01;SOR=0.034;VQSLOD=7.25;culprit=QD GT:AD:DP:GQ:PL 0/1:8,6:14:99:129,0,293 1 10494710 . T G 653.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.719;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.147;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.67;ReadPosRankSum=-0.386;SB=-2.220e+02;SOR=0.527;VQSLOD=7.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,26:56:99:682,0,810 1 10511330 rs3838398 AT A 114.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;DB;DP=11;ExcessHet=3.0103;FS=9.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.43;RPA=11,10;RU=T;ReadPosRankSum=0.728;SB=-9.732e-01;SOR=4.174;STR;VQSLOD=3.18;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:85:152,0,85 1 10511544 rs628462 C T 342.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=0.754;SB=-2.020e+02;SOR=0.722;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:17,13:30:99:371,0,433 1 10511589 rs666103 T C 789.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.33;SB=-4.350e+02;SOR=1.329;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:60:818,60,0 1 10523728 rs200149870 CT C 240.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQ0=0;MQRankSum=1.441;QD=8.30;RPA=12,11;RU=T;ReadPosRankSum=0.612;SB=-4.200e+01;SOR=0.770;STR;VQSLOD=1.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,15:41:99:278,0,298 1 10529194 rs2781233 T C 833.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.875;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=3.389;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.68;ReadPosRankSum=-0.050;SB=-2.210e+02;SOR=0.276;VQSLOD=10.33;culprit=SOR GT:AD:DP:GQ:PL 0/1:20,30:50:99:862,0,556 1 10555257 rs622623 C T 1361.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.42;SB=-3.200e+02;SOR=2.780;VQSLOD=7.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1390,105,0 1 10596388 rs2480779 A G 1089.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-3.250e+02;SOR=2.368;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:81:1118,81,0 1 10678488 rs284238 A T 1471.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.410;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=-0.868;SB=-9.280e+02;SOR=0.645;VQSLOD=8.44;culprit=FS GT:AD:DP:GQ:PL 0/1:71,59:130:99:1500,0,1897 1 10678610 rs284237 G A 736.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.185;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=-1.970;SB=-1.240e+02;SOR=0.749;VQSLOD=8.79;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:29,25:54:99:765,0,895 1 10678655 rs284236 T C 980.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.09;SB=0.00;SOR=6.736;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:84:1009,84,0 1 10703203 rs371904621 G GC 566.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.890;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.64;ReadPosRankSum=0.694;SB=-1.780e+02;SOR=0.519;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 0/1:9,14:23:99:604,0,332 1 10706091 rs284242 G C 707.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.613;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.66;ReadPosRankSum=0.193;SB=-1.765e+00;SOR=2.262;VQSLOD=5.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,21:36:99:736,0,461 1 10708142 rs778228 A G 539.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.875;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.126;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=-0.282;SB=-3.500e+02;SOR=0.454;VQSLOD=9.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,24:50:99:568,0,612 1 10709267 rs12143134 C T 469.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=4.643;HaplotypeScore=2.5540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=0.975;SB=-2.350e+02;SOR=0.784;VQSLOD=5.22;culprit=FS GT:AD:DP:GQ:PL 0/1:21,19:40:99:498,0,615 1 10709309 rs284300 C G 596.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.346;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.095;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=-0.396;SB=-3.630e+02;SOR=0.545;VQSLOD=8.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,23:46:99:625,0,651 1 10709441 rs284299 C T 482.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.541;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=-0.610;SB=-2.270e+02;SOR=0.749;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:31,19:51:99:511,0,751 1 10713765 rs284294 T C 811.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.036;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-0.494;SB=-4.100e+02;SOR=0.960;VQSLOD=7.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,33:66:99:840,0,897 1 10714330 . A AC 2468.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.29;RPA=1,2;RU=C;ReadPosRankSum=-0.624;SB=-7.580e+02;SOR=0.623;STR;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 0/1:64,64:129:99:2506,0,2336 1 10718731 rs150195305 CCTCTG C 1602.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;DB;DP=61;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.500;MQ=60.18;MQ0=0;MQRankSum=1.173;POSITIVE_TRAIN_SITE;QD=17.48;RPA=3,2;RU=CTCTG;ReadPosRankSum=0.272;SB=-3.680e+02;SOR=1.044;STR;VQSLOD=0.300;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,24:61:99:1640,0,2123 1 10719645 rs475980 A G 68.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.712;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.73;ReadPosRankSum=1.154;SB=-3.501e+01;SOR=0.223;VQSLOD=9.50;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:97:97,0,231 1 10719657 rs117450756 C T 207.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=-0.228;SB=-7.101e+01;SOR=0.582;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:236,0,157 1 11024180 rs201587321 A T 540.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.425;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.44;ReadPosRankSum=-0.020;SB=-1.050e+02;SOR=0.852;VQSLOD=8.69;culprit=FS GT:AD:DP:GQ:PL 0/1:12,19:31:99:569,0,296 1 11024353 rs6659231 A G 764.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.042;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=0.008;SB=-3.190e+02;SOR=0.735;VQSLOD=9.98;culprit=FS GT:AD:DP:GQ:PL 0/1:26,30:56:99:793,0,651 1 11024381 rs6659326 A G 657.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.812;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=3.183;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=-0.667;SB=-2.560e+02;SOR=0.297;VQSLOD=10.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,26:45:99:686,0,530 1 11079077 rs2273348 A G 524.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=-3.377e+01;SOR=4.047;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:553,42,0 1 11080723 rs70977536 T TG 852.73 PASS AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.42;RPA=2,3;RU=G;SB=-8.697e+01;SOR=3.912;STR;VQSLOD=4.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:23:66:890,66,0 1 11086097 . A AT 1270.73 PASS AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.34;RPA=1,2;RU=T;SB=-4.080e+02;SOR=1.688;STR;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:87:1308,87,0 1 11087524 rs1782455 G A 4349.77 PASS AC=2;AF=1.00;AN=2;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.06;SB=-1.945e+03;SOR=0.903;VQSLOD=5.13;culprit=DP GT:AD:DP:GQ:PL 1/1:0,155:156:99:4378,328,0 1 11087835 rs1782454 T C 503.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;SB=0.00;SOR=5.283;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:532,39,0 1 11090916 rs12711521 C A 2803.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-9.580e+02;SOR=1.855;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:2832,208,0 1 11095039 rs6695096 C T 866.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=-4.080e+02;SOR=1.179;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:69:895,69,0 1 11105106 rs2273345 C T 1119.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-4.300e+02;SOR=1.473;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:90:1148,90,0 1 11105122 rs2273344 C T 1223.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.20;SB=-5.780e+02;SOR=1.179;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:93:1252,93,0 1 11106909 rs66761147 C T 1012.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.861;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=1.564;HaplotypeScore=5.0893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.04;ReadPosRankSum=-0.757;SB=-6.260e+02;SOR=0.530;VQSLOD=8.57;culprit=QD GT:AD:DP:GQ:PL 0/1:69,43:112:99:1041,0,1842 1 11115177 rs376653450 CT C 52.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;DB;DP=11;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=0.000;QD=5.86;RPA=18,17;RU=T;ReadPosRankSum=-0.464;SB=-1.611e+01;SOR=1.981;STR;VQSLOD=3.98;culprit=QD GT:AD:DP:GQ:PL 0/1:4,5:11:49:90,0,49 1 11119135 rs743577 G A 504.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-1.165e+02;SOR=2.303;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:533,42,0 1 11126569 rs2791659 C A 522.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=0.00;SOR=5.421;VQSLOD=8.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:551,42,0 1 11126941 rs6701726 C T 905.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-1.891e+02;SOR=2.910;VQSLOD=7.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:934,72,0 1 11128001 rs2791657 A G 631.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;SB=-8.297e+01;SOR=3.716;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:660,54,0 1 11128654 rs2791655 G A 720.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.359;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.110;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-0.694;SB=-2.290e+02;SOR=1.002;VQSLOD=8.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,27:58:99:749,0,848 1 11129848 rs2791653 A G 942.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-2.221e+02;SOR=2.226;VQSLOD=4.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:971,72,0 1 11132217 rs1130683 G A 1024.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-5.110e+02;SOR=0.957;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:81:1053,81,0 1 11134157 rs2748876 T G 2068.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.37;SB=-1.041e+03;SOR=1.057;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2097,163,0 1 11137778 rs2259886 C T 780.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-1.791e+02;SOR=2.584;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:809,60,0 1 11141187 rs2258621 C G 3019.77 PASS AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-1.500e+03;SOR=1.329;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:102:99:3048,232,0 1 11151779 rs1148482 A G 833.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=-7.497e+01;SOR=4.003;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:63:862,63,0 1 11174761 . A T 388.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.46;ReadPosRankSum=-0.602;SB=-1.640e+02;SOR=0.368;VQSLOD=7.79;culprit=FS GT:AD:DP:GQ:PL 0/1:5,14:19:99:417,0,116 1 11187893 rs1770344 T C 1839.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-3.200e+02;SOR=3.258;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1868,141,0 1 11205058 rs1057079 C T 2155.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;SB=-9.480e+02;SOR=1.376;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2184,163,0 1 11253467 rs28991008 C A 236.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-0.140;SB=0.00;SOR=0.593;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:265,0,305 1 11288618 rs4845985 G A 1943.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-6.080e+02;SOR=2.340;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1972,150,0 1 11288633 rs4845986 G C 2184.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.10;SB=-6.530e+02;SOR=2.303;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2213,163,0 1 11288758 rs1064261 G A 1902.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.511;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=6.124;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.334;SB=-1.026e+03;SOR=0.355;VQSLOD=7.80;culprit=FS GT:AD:DP:GQ:PL 0/1:84,69:153:99:1931,0,2268 1 11292666 rs10864495 T A 344.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=0.00;SOR=4.804;VQSLOD=8.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:373,30,0 1 11294474 rs718206 T A 516.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.45;SB=0.00;SOR=5.421;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:545,42,0 1 11297762 rs7524202 T C 1601.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-6.680e+02;SOR=1.702;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1630,120,0 1 11298790 rs2024627 T C 381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=0.00;SOR=4.977;VQSLOD=9.78;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,11:11:30:410,30,0 1 11301714 rs1135172 A G 3988.77 PASS AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.33;SB=-2.484e+03;SOR=0.753;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,136:136:99:4017,298,0 1 11317320 rs2092642 C T 1353.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=-1.185e+02;SOR=4.351;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1382,105,0 1 11319587 rs4845988 A G 1025.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=-2.950e+02;SOR=2.235;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:78:1054,78,0 1 11574366 rs10864515 C G 1202.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.312;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=3.581;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=0.338;SB=-4.260e+02;SOR=0.356;VQSLOD=10.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,45:83:99:1231,0,1197 1 11575331 rs41274530 A G 166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.78;ReadPosRankSum=0.339;SB=-2.402e+01;SOR=1.085;VQSLOD=8.78;culprit=QD GT:AD:DP:GQ:PL 0/1:12,7:19:99:195,0,349 1 11575375 rs2594318 T A 684.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.070;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=3.595;HaplotypeScore=1.8910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.942;SB=-1.820e+02;SOR=0.269;VQSLOD=9.71;culprit=SOR GT:AD:DP:GQ:PL 0/1:19,24:43:99:713,0,567 1 11579344 rs2072995 G A 272.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.608;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.413;SB=-6.401e+01;SOR=0.527;VQSLOD=9.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,11:19:99:301,0,235 1 11579470 rs2072994 G A 1242.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=0.092;SB=-6.000e+02;SOR=0.695;VQSLOD=8.42;culprit=FS GT:AD:DP:GQ:PL 0/1:74,52:126:99:1271,0,1758 1 11579504 rs2072993 G C 1965.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.126;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=3.833;HaplotypeScore=2.6939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=0.568;SB=-1.313e+03;SOR=0.447;VQSLOD=7.63;culprit=DP GT:AD:DP:GQ:PL 0/1:70,83:153:99:1994,0,1703 1 11584164 rs2076469 A G 389.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.862;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.53;ReadPosRankSum=0.473;SB=-2.290e+02;SOR=0.539;VQSLOD=6.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,17:37:99:418,0,559 1 11586585 rs2817636 C G 542.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.484;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=-0.182;SB=-3.501e+01;SOR=0.880;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:16,19:35:99:571,0,498 1 11586677 rs2745260 T C 1790.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.871;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=2.370;SB=-7.090e+02;SOR=0.624;VQSLOD=8.76;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:50,68:118:99:1819,0,1294 1 11589449 rs2817630 A T 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=0.285;SB=-2.501e+01;SOR=1.981;VQSLOD=5.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,6:15:99:171,0,221 1 11589911 rs2076468 G A 1295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.972;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=1.099;SB=-7.140e+02;SOR=0.624;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:53,51:104:99:1324,0,1338 1 11590776 rs2244401 T A 171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.920;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=0.552;SB=0.00;SOR=0.569;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:200,0,213 1 11590778 rs2244400 T A 166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=0.835;SB=0.00;SOR=0.569;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:195,0,218 1 11590919 rs2244397 C A 1568.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.890;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=3.474;HaplotypeScore=4.6387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=0.267;SB=-8.280e+02;SOR=0.438;VQSLOD=8.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,63:121:99:1597,0,1544 1 11593793 . T TGCACACACGCAC 10476.73 PASS AC=2;AF=1.00;AN=2;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.85;MQ0=0;QD=29.72;SB=-2.975e+03;SOR=1.917;VQSLOD=5.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:76:99:10514,220,0 1 11594400 rs2235663 T C 718.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.811;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.636;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.11;ReadPosRankSum=1.201;SB=-9.100e+01;SOR=1.688;VQSLOD=5.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,23:42:99:747,0,508 1 11594681 rs2817628 C T 456.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.451;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=4.738;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-0.270;SB=-1.440e+02;SOR=0.129;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:14,16:30:99:485,0,438 1 11596762 rs2235666 C T 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.877;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.829;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.32;ReadPosRankSum=-1.940;SB=-1.160e+02;SOR=1.122;VQSLOD=6.13;culprit=QD GT:AD:DP:GQ:PL 0/1:10,11:21:99:203,0,256 1 11708736 rs1055547 T C 1448.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.41;SB=-7.690e+02;SOR=1.094;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1477,105,0 1 11714368 rs2272983 T G 508.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-1.831e+02;SOR=1.609;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:39:537,39,0 1 11718195 rs3125816 A G 165.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.758;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.89;ReadPosRankSum=1.159;SB=0.00;SOR=0.250;VQSLOD=9.75;culprit=QD GT:AD:DP:GQ:PL 0/1:14,7:21:99:194,0,490 1 11731927 rs3215521 AG A 1145.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.775;DB;DP=72;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.500;MQ=60.15;MQ0=0;MQRankSum=0.895;POSITIVE_TRAIN_SITE;QD=16.37;RPA=9,8;RU=G;ReadPosRankSum=0.956;SB=-2.180e+02;SOR=0.482;STR;VQSLOD=0.209;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,40:72:99:1183,0,836 1 11734049 rs1063301 C G 293.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.320;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-0.278;SB=0.00;SOR=0.387;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 0/1:15,10:25:99:322,0,549 1 11735262 rs2233027 C T 782.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.567;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.041;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-0.777;SB=-3.250e+02;SOR=0.510;VQSLOD=9.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,35:65:99:811,0,730 1 11735652 rs2233025 G A 1459.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.771;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=-1.086;SB=-6.910e+02;SOR=0.737;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 0/1:58,57:116:99:1488,0,1531 1 11735841 rs2233024 C A 2293.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.479;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=2.867;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=-0.954;SB=-1.043e+03;SOR=0.936;VQSLOD=7.10;culprit=DP GT:AD:DP:GQ:PL 0/1:70,88:158:99:2322,0,1899 1 11735877 rs2233022 A G 1485.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.907;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.708;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=0.629;SB=-5.970e+02;SOR=0.569;VQSLOD=8.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:69,55:124:99:1514,0,2009 1 11737051 rs2294638 G C 1567.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.6570;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.15;SB=-8.790e+02;SOR=1.036;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1596,114,0 1 11740358 rs7417320 A G 2548.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.64;SB=-1.092e+03;SOR=1.637;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2577,184,0 1 11766424 rs11121804 C T 369.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.519;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.073;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=-0.344;SB=-2.050e+02;SOR=0.313;VQSLOD=10.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,15:33:99:398,0,513 1 11766889 rs12132907 A G 338.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=-8.097e+01;SOR=2.303;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:367,27,0 1 11771988 rs17037327 A G 939.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.864;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-0.627;SB=-4.890e+02;SOR=0.766;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 0/1:32,36:68:99:968,0,839 1 11772303 rs1883574 A G 3222.65 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6408;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-1.501e+03;SOR=1.279;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:105:99:3251,241,0 1 11772340 rs2336034 G A 1620.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.823;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-1.200;SB=-8.910e+02;SOR=0.703;VQSLOD=9.29;culprit=FS GT:AD:DP:GQ:PL 0/1:54,69:123:99:1649,0,1451 1 11772526 rs1883573 A G 886.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.946;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5566;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=0.973;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-0.230;SB=-2.420e+02;SOR=0.565;VQSLOD=3.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,33:70:99:915,0,999 1 11779499 rs4846028 T C 262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.242;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.685;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.73;ReadPosRankSum=-0.276;SB=-6.200e+01;SOR=1.071;VQSLOD=7.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,10:27:99:291,0,483 1 11782506 rs34219540 T C 912.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.505;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.774;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=-0.767;SB=-6.650e+02;SOR=0.646;VQSLOD=8.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,41:96:99:941,0,1420 1 11782781 rs7533583 G C 847.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.020;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=1.995;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=1.498;SB=-4.930e+02;SOR=0.660;VQSLOD=6.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,32:70:99:876,0,979 1 11782886 rs6540990 C T 660.85 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.321;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.5030;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=0;MQRankSum=-0.134;POSITIVE_TRAIN_SITE;QD=22.03;ReadPosRankSum=-0.125;SB=-1.215e+02;SOR=1.739;VQSLOD=3.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,28:30:17:689,0,17 1 11807426 rs12752700 C T 1250.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-5.090e+02;SOR=1.721;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:93:1279,93,0 1 11808706 rs11121819 T G 250.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.050;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.197;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=0.000;SB=-2.501e+01;SOR=1.445;VQSLOD=6.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,9:21:99:279,0,280 1 11824575 rs10864536 T C 214.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.93;ReadPosRankSum=0.233;SB=-6.200e+01;SOR=0.527;VQSLOD=9.30;culprit=QD GT:AD:DP:GQ:PL 0/1:21,10:31:99:243,0,637 1 11826085 rs114941496 G A 2301.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=0.572;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=0.687;SB=-1.069e+03;SOR=0.782;VQSLOD=7.81;culprit=DP GT:AD:DP:GQ:PL 0/1:83,90:173:99:2330,0,2106 1 11827180 rs6540995 A G 1861.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6587;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=-7.510e+02;SOR=1.445;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1890,138,0 1 11827304 rs6540996 A G 2663.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4525;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-1.585e+03;SOR=0.760;VQSLOD=5.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:2692,199,0 1 11828364 rs77347935 G A 665.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.847;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-0.356;SB=-2.490e+02;SOR=1.340;VQSLOD=7.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,24:56:99:694,0,893 1 11831543 rs72638684 C T 933.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.236;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.854;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=0.511;SB=-5.680e+02;SOR=0.540;VQSLOD=9.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,38:80:99:962,0,1034 1 11831615 rs6667720 C T 928.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.043;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=4.297;HaplotypeScore=3.9320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-1.042;SB=-5.710e+02;SOR=0.351;VQSLOD=9.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,38:82:99:957,0,1195 1 11831756 rs6680385 A G 333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.280;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=-0.621;SB=-3.876e+01;SOR=0.317;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:19:99:362,0,212 1 11832289 rs61773952 C A 624.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.961;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=4.379;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=0.491;SB=-2.680e+02;SOR=0.269;VQSLOD=9.43;culprit=SOR GT:AD:DP:GQ:PL 0/1:33,27:60:99:653,0,949 1 11835455 rs72638698 T G 587.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.451;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.234;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=-0.176;SB=-2.350e+02;SOR=0.425;VQSLOD=9.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,22:50:99:616,0,795 1 11835556 rs41275456 C T 872.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.166;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=2.988;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=-0.555;SB=-4.790e+02;SOR=1.121;VQSLOD=7.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,37:81:99:901,0,1274 1 11836441 rs6699669 T C 382.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.34;SB=-1.821e+02;SOR=1.329;VQSLOD=5.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:30:411,30,0 1 11836450 rs12132479 A G 244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.171;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=-0.109;SB=-1.010e+02;SOR=1.609;VQSLOD=6.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,10:16:99:273,0,129 1 11836628 rs6699881 T C 81.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.54;ReadPosRankSum=0.246;SB=-5.900e+01;SOR=0.582;VQSLOD=9.54;culprit=QD GT:AD:DP:GQ:PL 0/1:13,5:18:99:110,0,405 1 11836670 rs41275458 C A 55.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.28;ReadPosRankSum=-0.397;SB=-1.514e+01;SOR=1.561;VQSLOD=4.59;culprit=QD GT:AD:DP:GQ:PL 0/1:13,4:17:84:84,0,400 1 11838646 rs12134663 A C 377.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.115;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-1.367;SB=-2.801e+01;SOR=0.976;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:15,12:27:99:406,0,424 1 11838696 rs72640210 A G 612.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.307;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=-0.186;SB=-2.470e+02;SOR=0.527;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:22,26:48:99:641,0,623 1 11838841 rs56001051 A G 940.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=5.341;HaplotypeScore=4.5267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=0.585;SB=-4.300e+02;SOR=0.827;VQSLOD=5.62;culprit=FS GT:AD:DP:GQ:PL 0/1:28,31:59:99:969,0,842 1 11839009 rs55685198 C T 293.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.723;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=-0.579;SB=-9.400e+01;SOR=0.892;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:8,12:20:99:322,0,205 1 11839034 rs55967531 G A 171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=1.987;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=-1.001;SB=-1.030e+02;SOR=0.330;VQSLOD=9.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,7:14:99:200,0,213 1 11839201 rs41307759 T A 63.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.38;ReadPosRankSum=0.105;SB=-2.701e+01;SOR=0.892;VQSLOD=9.08;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:92:92,0,220 1 11839850 rs140897322 CT C 298.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.89;RPA=3,2;RU=T;ReadPosRankSum=0.794;SB=-1.420e+02;SOR=0.634;STR;VQSLOD=8.56;culprit=FS GT:AD:DP:GQ:PL 0/1:3,9:12:74:336,0,74 1 11839923 rs12561919 C T 35.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.241;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.58;ReadPosRankSum=0.536;SB=-2.203e+01;SOR=0.916;VQSLOD=4.21;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:64:64,0,179 1 11844214 rs12135232 A T 529.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=0.785;SB=-2.810e+02;SOR=0.527;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:19,22:41:99:558,0,517 1 11844737 rs55890341 A G 107.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=6.532;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=0.000;SB=-7.497e+01;SOR=0.048;VQSLOD=8.99;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:136,0,166 1 11845113 rs11587953 G A 371.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=-4.276e+01;SOR=3.442;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:400,30,0 1 11845167 rs199890035 TTTA T 948.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.673;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.71;ReadPosRankSum=-0.664;SB=-1.800e+02;SOR=0.716;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 0/1:12,17:29:99:986,0,618 1 11845222 rs55867221 T C 611.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=0.246;SB=-3.110e+02;SOR=0.478;VQSLOD=9.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,25:43:99:640,0,433 1 11847449 rs3737967 G A 304.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.310;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-0.272;SB=-5.800e+01;SOR=0.972;VQSLOD=9.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,11:27:99:333,0,438 1 11847772 rs3820192 G T 315.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.511;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.549;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=1.960;SB=-1.900e+02;SOR=0.328;VQSLOD=9.09;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:15,13:28:99:344,0,395 1 11847861 rs1537516 G A 277.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.512;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=0.607;SB=-1.670e+02;SOR=0.693;VQSLOD=10.37;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:306,0,316 1 11847902 rs1537515 C A 257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.598;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.976;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=0.216;SB=-1.510e+02;SOR=0.197;VQSLOD=9.71;culprit=SOR GT:AD:DP:GQ:PL 0/1:12,11:23:99:286,0,312 1 11848068 rs1537514 G C 912.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.811;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=6.093;HaplotypeScore=3.7956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=0.621;SB=-4.110e+02;SOR=1.260;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 0/1:40,35:75:99:941,0,954 1 11848139 rs11559040 G A 985.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=3.169;HaplotypeScore=2.7577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-0.917;SB=-6.260e+02;SOR=0.382;VQSLOD=9.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,38:73:99:1014,0,946 1 11848879 rs2077360 A G 1211.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SB=-2.820e+02;SOR=2.494;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:90:1240,90,0 1 11849447 rs868014 A G 1584.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-9.340e+02;SOR=0.813;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1613,123,0 1 11850927 rs2274976 C T 1823.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.191;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.729;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.08;MQ0=0;MQRankSum=0.963;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-1.024;SB=-6.670e+02;SOR=0.617;VQSLOD=0.457;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,68:129:99:1852,0,1593 1 11851118 rs7518348 A G 1076.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.65;SB=-8.197e+01;SOR=4.680;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:90:1105,90,0 1 11852300 rs1476413 C T 3261.77 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;SB=-1.548e+03;SOR=1.343;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,108:108:99:3290,238,0 1 11854457 rs4846051 G A 2802.77 PASS AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.14;SB=-1.540e+03;SOR=1.006;VQSLOD=7.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:93:99:2831,208,0 1 11854476 rs1801131 T G 1357.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.754;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.762;SB=-7.990e+02;SOR=0.633;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:46,51:97:99:1386,0,1102 1 11854671 rs12121543 C A 1115.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.885;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=1.187;SB=-4.340e+02;SOR=0.733;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:30,39:69:99:1144,0,875 1 11854896 rs2066462 G A 1202.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.184;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=9.512;HaplotypeScore=4.7980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-0.719;SB=-4.910e+02;SOR=0.208;VQSLOD=5.48;culprit=FS GT:AD:DP:GQ:PL 0/1:59,49:108:99:1231,0,1842 1 11860120 rs11121832 T C 102.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=-0.825;SB=0.00;SOR=0.412;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:131,0,201 1 11863057 rs2066470 G A 1369.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.229;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=2.566;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=0.825;SB=-6.900e+02;SOR=0.998;VQSLOD=7.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,51:103:99:1398,0,1254 1 11866451 rs3737965 G A 144.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.1619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=1.308;SB=-2.901e+01;SOR=1.402;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:91:173,0,91 1 11867044 rs3737964 T C 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.384;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-0.289;SB=-6.500e+01;SOR=0.527;VQSLOD=10.24;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:20:99:309,0,273 1 11879360 rs2076002 G A 235.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.852;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=-0.924;SB=0.00;SOR=0.693;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:264,0,270 1 11879685 rs198393 C T 1945.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-4.490e+02;SOR=2.644;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1974,147,0 1 11879699 rs2050265 A G 621.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=1.313;SB=-1.370e+02;SOR=0.563;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:26,23:49:99:650,0,788 1 11883629 rs198399 T A 361.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=0.00;SOR=4.804;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:390,30,0 1 11883731 rs12567136 C T 897.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.191;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-0.712;SB=-1.890e+02;SOR=0.569;VQSLOD=10.03;culprit=FS GT:AD:DP:GQ:PL 0/1:37,33:70:99:926,0,1136 1 11884555 rs198400 A G 3892.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.815;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.2599;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.62;ReadPosRankSum=1.440;SB=-2.574e+03;SOR=0.247;VQSLOD=4.20;culprit=FS GT:AD:DP:GQ:PL 1/1:1,135:136:99:3921,253,0 1 11886383 rs376046706 C CTG 1119.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;DB;DP=38;ExcessHet=3.0103;FS=8.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=31.10;RPA=1,2;RU=TG;ReadPosRankSum=0.453;SB=-2.741e+02;SOR=0.064;STR;VQSLOD=2.64;culprit=FS GT:AD:DP:GQ:PL 0/1:12,24:38:99:1157,0,501 1 11887303 rs7537765 A G 761.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.348;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=3.995;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.944;SB=-1.710e+02;SOR=1.424;VQSLOD=7.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,27:61:99:790,0,900 1 11887316 rs41275478 C A 653.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.984;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=5.747;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=0.966;SB=-1.730e+02;SOR=1.609;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 0/1:34,27:61:99:682,0,925 1 11887373 rs372917466 T TG 696.73 PASS AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.77;RPA=6,7;RU=G;SB=-1.971e+02;SOR=2.765;STR;VQSLOD=1.40;culprit=QD GT:AD:DP:GQ:PL 1/1:0,32:33:85:734,85,0 1 11887374 . G GA 639.70 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.585;DP=32;ExcessHet=3.0103;FS=3.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.99;ReadPosRankSum=-0.962;SB=-4.579e+01;SOR=1.547;VQSLOD=4.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,16:32:6:676,0,6 1 11887382 rs56190030 A G 415.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.235;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=12.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.86;ReadPosRankSum=-0.754;SB=-1.352e-01;SOR=3.755;VQSLOD=3.11;culprit=FS GT:AD:DP:GQ:PL 0/1:17,13:30:99:444,0,446 1 11888061 rs77072136 C T 784.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.594;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.376;HaplotypeScore=2.7764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.06;ReadPosRankSum=0.586;SB=-1.640e+02;SOR=1.093;VQSLOD=6.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,28:46:99:813,0,429 1 11888384 rs198401 A G 944.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=-4.390e+02;SOR=0.941;VQSLOD=4.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:72:973,72,0 1 11889225 rs41275484 G A 1895.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.991;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=1.424;HaplotypeScore=2.6949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=0.141;SB=-6.670e+02;SOR=0.921;VQSLOD=7.32;culprit=DP GT:AD:DP:GQ:PL 0/1:74,72:146:99:1924,0,1905 1 11889468 rs535107 A G 3859.77 PASS AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-1.348e+03;SOR=1.981;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,117:117:99:3888,286,0 1 11896345 rs198402 T C 68.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.29;ReadPosRankSum=-1.047;SB=0.00;SOR=0.804;VQSLOD=8.69;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:97:97,0,266 1 11897082 rs41275500 C T 816.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.224;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=4.655;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=-0.252;SB=-3.110e+02;SOR=1.339;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 0/1:44,33:77:99:845,0,1155 1 11897271 rs198405 T C 1225.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=9.590;HaplotypeScore=1.9301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=2.015;SB=-4.360e+02;SOR=1.590;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 0/1:37,40:77:99:1254,0,1158 1 11897286 rs72640267 G T 1210.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.339;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=5.489;HaplotypeScore=2.7330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-2.524;SB=-6.550e+02;SOR=0.326;VQSLOD=8.19;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:45,42:87:99:1239,0,1258 1 11897592 rs198406 A G 3625.77 PASS AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=-1.293e+03;SOR=1.940;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,115:115:99:3654,262,0 1 11898789 rs2272803 G T 1717.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.593;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=4.210;HaplotypeScore=2.6297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=1.053;SB=-8.610e+02;SOR=1.071;VQSLOD=7.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,66:129:99:1746,0,1854 1 11898849 rs198409 T G 1314.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.018;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=4.612;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-0.184;SB=-6.660e+02;SOR=1.035;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 0/1:60,53:114:99:1343,0,1711 1 11899033 rs1023252 G T 1171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.428;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.735;HaplotypeScore=7.3781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=0.915;SB=-5.410e+02;SOR=0.775;VQSLOD=7.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,50:105:99:1200,0,1486 1 11900035 rs198410 G A 1881.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.21;SB=-2.580e+02;SOR=3.651;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1910,147,0 1 11900385 rs198411 C T 404.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.497;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=-0.527;SB=-7.100e+01;SOR=0.627;VQSLOD=10.30;culprit=FS GT:AD:DP:GQ:PL 0/1:10,15:25:99:433,0,302 1 11905981 rs5067 A G 772.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.152;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.486;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.34;ReadPosRankSum=-0.403;SB=-7.000e+01;SOR=2.049;VQSLOD=6.20;culprit=QD GT:AD:DP:GQ:PL 0/1:11,27:38:99:801,0,330 1 11906068 rs5065 A G 1208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.134;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.801;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.666;SB=-8.660e+02;SOR=0.547;VQSLOD=9.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,54:92:99:1237,0,912 1 11907603 rs5064 G A 1114.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.979;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=4.782;HaplotypeScore=7.0048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=-0.843;SB=-5.760e+02;SOR=0.610;VQSLOD=5.38;culprit=FS GT:AD:DP:GQ:PL 0/1:61,47:108:99:1143,0,1525 1 11907648 rs5063 C T 1385.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.775;HaplotypeScore=6.2185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=-0.741;SB=-7.240e+02;SOR=0.837;VQSLOD=8.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,59:102:99:1414,0,961 1 11917618 . A AT 1377.73 PASS AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.65;RPA=2,3;RU=T;SB=-3.430e+02;SOR=2.242;STR;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1415,111,0 1 11971345 rs4845889 T C 480.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.28;SB=-1.653e+02;SOR=2.179;VQSLOD=5.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:509,42,0 1 11982544 rs2639453 T C 2064.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=-5.600e+02;SOR=2.267;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2093,150,0 1 11982580 rs11555351 G A 950.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.989;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.831;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=-1.491;SB=-3.880e+02;SOR=0.799;VQSLOD=6.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,39:93:99:979,0,1428 1 11983206 rs3795408 A G 7731.77 PASS AC=2;AF=1.00;AN=2;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4123;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;SB=-3.588e+03;SOR=1.001;VQSLOD=3.96;culprit=DP GT:AD:DP:GQ:PL 1/1:0,250:250:99:7760,575,0 1 11995176 rs1208984 A G 180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.775;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.04;ReadPosRankSum=-1.510;SB=-5.600e+01;SOR=1.022;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:13,7:20:99:209,0,290 1 12004493 . C CAA 238.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.89;RPA=1,3;RU=A;ReadPosRankSum=-0.541;SB=-8.907e+01;SOR=0.269;STR;VQSLOD=7.48;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:13:99:276,0,113 1 12009777 rs114595968 C G 148.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.089;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.30;ReadPosRankSum=-0.828;SB=-3.001e+01;SOR=0.473;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:9,7:16:99:177,0,275 1 12009911 rs34878020 G A 616.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.395;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=-1.723;SB=-3.770e+02;SOR=0.573;VQSLOD=9.00;culprit=FS GT:AD:DP:GQ:PL 0/1:30,30:60:99:645,0,849 1 12009956 rs7551175 G A 1877.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.45;SB=-1.142e+03;SOR=0.957;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:1906,141,0 1 12012409 rs2273286 A G 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.454;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-0.197;SB=-6.900e+01;SOR=0.693;VQSLOD=10.37;culprit=FS GT:AD:DP:GQ:PL 0/1:11,11:22:99:317,0,298 1 12016957 rs41307745 T G 979.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.654;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.985;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-1.198;SB=-4.490e+02;SOR=0.538;VQSLOD=9.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,38:68:99:1008,0,729 1 12027204 rs2273293 C T 341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.405;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.046;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=-0.671;SB=-1.480e+02;SOR=0.333;VQSLOD=9.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,14:21:99:370,0,175 1 12030759 rs35460537 G T 2151.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.710;DB;DP=177;Dels=0.00;ExcessHet=3.0103;FS=6.433;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=1.156;SB=-1.020e+03;SOR=1.135;VQSLOD=5.17;culprit=DP GT:AD:DP:GQ:PL 0/1:95,82:177:99:2180,0,2543 1 12030995 rs59235751 A G 391.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=0.00;SOR=4.977;VQSLOD=7.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:420,33,0 1 12033113 rs3737961 A G 1834.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.36;SB=-3.970e+02;SOR=2.917;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1863,138,0 1 12033120 rs3820190 G C 1685.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.72;SB=-2.810e+02;SOR=3.442;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1714,129,0 1 12034805 rs879690 T C 1202.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=4.514;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=-2.329;SB=-7.590e+02;SOR=0.382;VQSLOD=8.18;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:72,51:123:99:1231,0,1754 1 12034814 rs879691 C G 1167.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.929;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=6.167;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=-1.499;SB=-7.200e+02;SOR=0.323;VQSLOD=7.83;culprit=FS GT:AD:DP:GQ:PL 0/1:69,45:114:99:1196,0,1742 1 12056440 rs2236056 C T 807.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;SB=0.00;SOR=6.184;VQSLOD=7.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:836,63,0 1 12058606 rs143897072 AAAAAC A 1189.73 PASS AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;RPA=5,4;RU=AAAAC;SB=-1.340e+02;SOR=3.611;STR;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:1227,57,0 1 12058802 rs41278626 T C 2354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.456;DB;DP=214;Dels=0.00;ExcessHet=3.0103;FS=4.770;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=0.353;SB=-1.516e+03;SOR=0.440;VQSLOD=3.65;culprit=DP GT:AD:DP:GQ:PL 0/1:119,95:214:99:2383,0,2930 1 12062205 rs2236057 A G 2880.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.89;SB=-6.430e+02;SOR=2.625;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2909,211,0 1 12065170 rs3766742 A G 336.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.614;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=-0.310;SB=-1.240e+02;SOR=0.336;VQSLOD=9.87;culprit=QD GT:AD:DP:GQ:PL 0/1:22,15:37:99:365,0,642 1 12065801 rs376598131 G A 887.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.884;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=4.256;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.32;ReadPosRankSum=-1.648;SB=-3.420e+02;SOR=1.164;VQSLOD=5.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,34:86:99:916,0,1331 1 12065841 rs1042837 C T 1139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.179;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=6.605;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-0.716;SB=-4.470e+02;SOR=1.347;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 0/1:54,43:97:99:1168,0,1452 1 12066813 rs2273295 T C 563.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.757;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6603;MLEAC=1;MLEAF=0.500;MQ=58.65;MQ0=0;MQRankSum=0.366;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=2.174;SB=-1.330e+02;SOR=1.270;VQSLOD=3.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,19:32:99:592,0,280 1 12067044 rs7550536 T G 420.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.259;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=1.334;SB=0.00;SOR=0.963;VQSLOD=10.14;culprit=FS GT:AD:DP:GQ:PL 0/1:10,13:23:99:449,0,296 1 12067388 rs11586204 C T 867.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.887;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.232;HaplotypeScore=6.3084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=1.812;SB=-2.030e+02;SOR=0.498;VQSLOD=9.12;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:36,35:72:99:896,0,994 1 12069798 rs77262016 T C 1092.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=2.992;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-0.442;SB=-5.670e+02;SOR=0.386;VQSLOD=9.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,45:93:99:1121,0,1267 1 12071433 rs3766741 C G 901.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.380;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=-0.815;SB=-5.830e+02;SOR=0.671;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:25,38:63:99:930,0,676 1 12071680 rs1042842 A G 488.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.91;SB=-6.597e+01;SOR=2.985;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:517,39,0 1 12082334 rs11553925 A T 1458.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.678;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=0.596;SB=-7.850e+02;SOR=0.781;VQSLOD=7.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,54:120:99:1487,0,1581 1 12082461 rs11588712 C T 1361.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=1.724;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=-0.470;SB=-7.850e+02;SOR=0.738;VQSLOD=7.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,49:89:99:1390,0,1119 1 12082881 rs11588779 C T 813.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.589;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=1.508;SB=-4.080e+02;SOR=0.606;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:34,32:66:99:842,0,907 1 12082926 rs2295283 A G 747.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.872;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.228;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=-1.221;SB=-2.840e+02;SOR=1.082;VQSLOD=7.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,29:49:99:776,0,501 1 12090001 rs4514248 T C 1568.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.758;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.634;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=1.221;SB=-8.540e+02;SOR=0.610;VQSLOD=8.52;culprit=DP GT:AD:DP:GQ:PL 0/1:79,61:140:99:1597,0,2126 1 12091210 rs946461 T C 415.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.223;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=0.046;SB=-7.100e+01;SOR=0.859;VQSLOD=9.92;culprit=FS GT:AD:DP:GQ:PL 0/1:13,15:28:99:444,0,381 1 12123644 . C T 170.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.67;ReadPosRankSum=1.405;SB=-5.900e+01;SOR=0.693;VQSLOD=8.21;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:199,0,213 1 12144219 rs1201114 A G 587.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.99;SB=-2.061e+02;SOR=2.200;VQSLOD=6.54;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,21:21:48:616,48,0 1 12144662 rs11569821 T A 1152.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.037;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.0315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-0.398;SB=-6.400e+02;SOR=0.620;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:37,42:80:99:1181,0,936 1 12144667 rs11569822 C T 1104.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.316;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.0488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-0.128;SB=-6.200e+02;SOR=0.627;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:38,41:79:99:1133,0,1047 1 12144801 rs137907825 CTG C 463.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.32;RPA=2,1;RU=TG;ReadPosRankSum=-0.377;SB=-5.376e+01;SOR=0.257;STR;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:11,13:28:99:501,0,465 1 12157076 rs11121856 A C 721.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.088;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.992;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=1.277;SB=-3.000e+02;SOR=0.475;VQSLOD=9.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,28:71:99:750,0,1170 1 12175729 rs1763642 C T 4843.77 PASS AC=2;AF=1.00;AN=2;DB;DP=160;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.27;SB=-3.027e+03;SOR=0.770;VQSLOD=6.04;culprit=DP GT:AD:DP:GQ:PL 1/1:0,160:160:99:4872,352,0 1 12198635 rs6419481 T C 1889.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.36;SB=-7.150e+02;SOR=1.609;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1918,138,0 1 12248942 rs945439 A G 1026.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.087;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=1.924;HaplotypeScore=2.6308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-0.933;SB=-3.420e+02;SOR=0.938;VQSLOD=7.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,39:89:99:1055,0,1133 1 12248965 rs945438 A G 771.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.295;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-0.760;SB=-2.080e+02;SOR=0.713;VQSLOD=8.49;culprit=FS GT:AD:DP:GQ:PL 0/1:40,29:69:99:800,0,1023 1 12249020 rs1815530 C T 348.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.950;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=0.848;SB=0.00;SOR=0.384;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:18,12:30:99:377,0,566 1 12249031 rs1201157 A G 967.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.22;SB=0.00;SOR=6.593;VQSLOD=7.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:78:996,78,0 1 12251765 rs498906 T G 387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.751;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.686;HaplotypeScore=1.8519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=1.096;SB=-1.440e+02;SOR=0.343;VQSLOD=9.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,15:32:99:416,0,460 1 12251808 rs653667 T G 786.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.013;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.299;HaplotypeScore=3.6981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=0.303;SB=-3.900e+02;SOR=0.394;VQSLOD=10.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,30:62:99:815,0,918 1 12252892 rs1768642 C T 139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.32;ReadPosRankSum=2.026;SB=-2.601e+01;SOR=0.368;VQSLOD=9.07;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,6:15:99:168,0,284 1 12252955 rs1061622 T G 375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.516;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=-1.278;SB=-9.900e+01;SOR=0.576;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:20,14:35:99:404,0,615 1 12253062 rs5746026 G A 969.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.723;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.9869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=1.267;SB=-4.830e+02;SOR=0.766;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 0/1:42,39:82:99:998,0,1210 1 12254746 . G GA 590.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;DP=36;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.46;RPA=2,3;RU=A;ReadPosRankSum=0.058;SB=-9.700e+01;SOR=1.220;STR;VQSLOD=5.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,19:36:99:628,0,452 1 12261972 rs5746051 A G 516.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.732;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=4.758;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=0.171;SB=-6.800e+01;SOR=1.670;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 0/1:36,20:56:99:545,0,1104 1 12262298 rs5746053 G A 163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.374;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.44;ReadPosRankSum=-0.670;SB=-1.765e+00;SOR=0.760;VQSLOD=9.72;culprit=QD GT:AD:DP:GQ:PL 0/1:15,7:22:99:192,0,509 1 12266612 rs5746062 A G 440.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.456;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=10.705;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=-0.694;SB=-5.900e+01;SOR=3.126;VQSLOD=5.04;culprit=FS GT:AD:DP:GQ:PL 0/1:10,15:25:99:469,0,234 1 12266656 rs5746063 G T 764.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.247;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.544;HaplotypeScore=2.8133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=1.059;SB=-2.300e+02;SOR=1.121;VQSLOD=7.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,29:54:99:793,0,709 1 12316747 . GT G 71.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.898;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQ0=0;MQRankSum=0.623;QD=4.78;RPA=20,19;RU=T;ReadPosRankSum=-1.252;SB=-2.578e+01;SOR=0.223;STR;VQSLOD=1.81;culprit=QD GT:AD:DP:GQ:PL 0/1:7,8:21:99:109,0,100 1 12317121 rs117559901 A G 645.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.942;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=0.597;SB=-4.940e+02;SOR=0.602;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:19,28:47:99:674,0,491 1 12339619 rs4845898 A T 933.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.455;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-1.216;SB=-4.100e+02;SOR=0.748;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:37,41:78:99:962,0,914 1 12368705 . GT G 59.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=0.756;QD=2.60;RPA=15,14;RU=T;ReadPosRankSum=1.203;SB=-9.736e-01;SOR=1.270;STR;VQSLOD=1.30;culprit=QD GT:AD:DP:GQ:PL 0/1:16,7:29:97:97,0,289 1 12401868 rs28551666 A C 3470.77 PASS AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-1.575e+03;SOR=1.423;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,109:109:99:3499,256,0 1 12418700 rs10864552 T C 874.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-1.603e+02;SOR=3.258;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:903,72,0 1 12567232 rs7554257 A G 2079.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.09;SB=-1.234e+03;SOR=0.725;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:2108,154,0 1 12628637 rs4240900 G A 399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;SB=0.00;SOR=4.977;VQSLOD=8.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:428,33,0 1 12638964 rs2275875 T C 4891.77 PASS AC=2;AF=1.00;AN=2;DB;DP=166;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8835;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.47;SB=-2.879e+03;SOR=1.022;VQSLOD=6.03;culprit=DP GT:AD:DP:GQ:PL 1/1:0,166:166:99:4920,367,0 1 12639018 rs2275874 C T 4171.77 PASS AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.19;SB=-1.852e+03;SOR=1.304;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,122:122:99:4200,310,0 1 12639168 rs3128461 A G 3440.77 PASS AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;SB=-2.050e+03;SOR=0.827;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,109:109:99:3469,250,0 1 12776134 rs3010874 C A 729.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-6.797e+01;SOR=3.912;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:758,60,0 1 12776218 rs3000860 A C 2279.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=-7.680e+02;SOR=1.885;VQSLOD=7.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2308,169,0 1 12776344 rs3000859 A T 3665.77 PASS AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;SB=-2.211e+03;SOR=0.781;VQSLOD=6.50;culprit=DP GT:AD:DP:GQ:PL 1/1:0,117:117:99:3694,268,0 1 12779560 rs3010876 T C 3880.77 PASS AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.18;SB=-2.505e+03;SOR=0.802;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,133:134:99:3909,283,0 1 12779618 rs3010877 T C 2831.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.32;SB=-1.445e+03;SOR=1.345;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:2860,208,0 1 12785093 rs4361998 T G 1828.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=-8.050e+02;SOR=1.392;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1857,138,0 1 12785494 rs7513079 G T 3044.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5810;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=-1.682e+03;SOR=0.836;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:3073,226,0 1 12786070 rs3000930 A G 525.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.61;SB=0.00;SOR=5.421;VQSLOD=8.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:554,42,0 1 12820870 rs1132185 T C 2645.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=-8.590e+02;SOR=2.133;VQSLOD=7.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2674,193,0 1 12835868 rs1812242 T C 4290.77 PASS AC=2;AF=1.00;AN=2;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-2.224e+03;SOR=1.244;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,142:142:99:4319,331,0 1 12837634 rs848578 T A 3892.77 PASS AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.2733;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-2.203e+03;SOR=0.949;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,129:129:99:3921,298,0 1 12837840 rs848577 G C 1925.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.18;SB=-6.700e+02;SOR=2.165;VQSLOD=5.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:1954,150,0 1 12854530 rs1063776 C G 2897.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=1;POSITIVE_TRAIN_SITE;QD=29.57;SB=-1.290e+03;SOR=1.274;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:2926,217,0 1 12887549 rs2994114 T C 6370.77 PASS AC=2;AF=1.00;AN=2;DB;DP=200;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=-3.839e+03;SOR=0.754;VQSLOD=6.34;culprit=DP GT:AD:DP:GQ:PL 1/1:0,200:200:99:6399,467,0 1 12888601 . G GC 1222.73 PASS AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=26.94;RPA=3,4;RU=C;SB=-5.850e+02;SOR=0.818;STR;VQSLOD=3.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:34:96:1260,96,0 1 12888795 rs61777007 T A 767.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.09;MQ0=1;MQRankSum=-0.552;QD=15.05;ReadPosRankSum=0.393;SB=-2.700e+02;SOR=0.813;VQSLOD=2.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,29:51:99:796,0,513 1 12888840 rs2982099 C G 1087.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.13;MQ0=1;POSITIVE_TRAIN_SITE;QD=25.82;SB=-7.897e+01;SOR=4.548;VQSLOD=4.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:84:1116,84,0 1 12888867 rs61777008 A G 470.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.570;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=43.28;MQ0=1;MQRankSum=0.488;QD=18.83;ReadPosRankSum=-0.925;SB=0.00;SOR=1.270;VQSLOD=2.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,15:25:99:499,0,261 1 12888878 rs61777009 C A 348.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.315;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=40.15;MQ0=1;MQRankSum=1.711;QD=18.36;ReadPosRankSum=-0.589;SB=0.00;SOR=1.179;VQSLOD=2.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,11:19:99:377,0,210 1 12897909 rs199536866 C G 383.28 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.329;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.66;MQ0=0;MQRankSum=-0.869;QD=23.96;ReadPosRankSum=0.241;SB=-1.881e+02;SOR=1.329;VQSLOD=2.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,14:16:9:411,0,9 1 12897985 . C CAA 736.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.14;MQ0=0;MQRankSum=-0.826;QD=26.49;RPA=1,3;RU=A;ReadPosRankSum=0.301;SB=-3.050e+02;SOR=1.292;STR;VQSLOD=2.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,19:21:48:774,0,48 1 12897987 rs200260124 C G 501.78 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.86;MQ0=1;MQRankSum=-0.928;QD=22.81;ReadPosRankSum=0.601;SB=-2.651e+02;SOR=1.022;VQSLOD=2.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,20:22:0:527,0,0 1 12898323 . A G 46.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8438;MLEAC=1;MLEAF=0.500;MQ=56.64;MQ0=0;MQRankSum=0.605;QD=3.90;ReadPosRankSum=-2.838;SB=-2.801e+01;SOR=0.275;VQSLOD=1.19;culprit=QD GT:AD:DP:GQ:PL 0/1:9,3:12:75:75,0,238 1 12898472 rs4301642 C T 3612.77 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.97;SB=-1.417e+03;SOR=1.695;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,113:114:99:3641,268,0 1 12898512 rs116549626 G T 1201.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.439;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.24;MQ0=0;MQRankSum=-3.591;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=-0.886;SB=-5.290e+02;SOR=0.754;VQSLOD=1.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:70,46:116:99:1230,0,2110 1 12898517 rs72472679 C G 1272.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.93;MQ0=0;MQRankSum=-3.607;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=-1.018;SB=-5.970e+02;SOR=0.722;VQSLOD=0.912;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:73,48:121:99:1301,0,2151 1 12898673 rs4453052 G T 3783.77 PASS AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=44.13;MQ0=13;POSITIVE_TRAIN_SITE;QD=26.46;SB=-1.634e+03;SOR=1.259;VQSLOD=4.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,143:143:99:3812,289,0 1 12907212 rs5027838 T A 103.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.91;MQ0=0;MQRankSum=-1.985;QD=5.76;ReadPosRankSum=-0.099;SB=-1.765e+00;SOR=0.616;VQSLOD=2.17;culprit=QD GT:AD:DP:GQ:PL 0/1:13,5:18:99:132,0,426 1 12907285 rs148930640 G C 116.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.814;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.61;MQ0=0;MQRankSum=-3.109;QD=4.03;ReadPosRankSum=0.952;SB=-2.657e-01;SOR=0.804;VQSLOD=1.56;culprit=QD GT:AD:DP:GQ:PL 0/1:21,8:29:99:145,0,714 1 12907507 rs12409975 C T 872.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.119;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7845;MLEAC=1;MLEAF=0.500;MQ=47.12;MQ0=0;MQRankSum=-2.683;QD=11.05;ReadPosRankSum=0.570;SB=-4.940e+02;SOR=0.677;VQSLOD=1.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,34:79:99:901,0,1145 1 12907508 rs138145027 T C 871.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.623;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8264;MLEAC=1;MLEAF=0.500;MQ=46.74;MQ0=0;MQRankSum=-2.428;QD=11.32;ReadPosRankSum=0.303;SB=-4.770e+02;SOR=0.587;VQSLOD=1.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,34:77:99:900,0,1076 1 12907533 rs141872266 T C 928.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.080;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=3.338;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=48.82;MQ0=0;MQRankSum=-0.434;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.294;SB=-2.860e+02;SOR=1.136;VQSLOD=0.021;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,33:71:99:957,0,992 1 12907633 rs75660350 G A 1917.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.606;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=2.356;HaplotypeScore=1.9318;MLEAC=1;MLEAF=0.500;MQ=59.37;MQ0=0;MQRankSum=-2.709;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=-0.309;SB=-7.460e+02;SOR=1.037;VQSLOD=0.070;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,74:137:99:1946,0,1784 1 12908333 rs61775391 T C 739.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.188;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=49.44;MQ0=0;MQRankSum=-2.729;QD=16.08;ReadPosRankSum=-0.539;SB=-4.276e+01;SOR=0.662;VQSLOD=1.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,31:46:99:768,0,461 1 12908349 rs148082633 A AT 835.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.113;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.92;MQ0=0;MQRankSum=-1.507;QD=26.96;ReadPosRankSum=-0.475;SB=-5.176e+01;SOR=0.527;VQSLOD=1.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,20:31:99:873,0,398 1 12908375 rs61775392 T C 361.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.666;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.5959;MLEAC=1;MLEAF=0.500;MQ=51.32;MQ0=0;MQRankSum=-0.300;QD=19.04;ReadPosRankSum=1.298;SB=0.00;SOR=1.981;VQSLOD=1.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,14:19:99:390,0,140 1 12908384 rs144125074 G GA 170.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.82;MQ0=0;MQRankSum=-1.248;QD=15.52;RPA=8,9;RU=A;ReadPosRankSum=1.083;SB=0.00;SOR=1.802;STR;VQSLOD=1.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,8:14:48:208,0,48 1 12908424 . G GA 124.25 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.22;MQ0=0;MQRankSum=-0.566;QD=17.75;RPA=7,8;RU=A;ReadPosRankSum=1.068;SB=0.00;SOR=2.584;STR;VQSLOD=0.181;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:1,6:8:9:161,0,9 1 12918819 . C T 759.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.390;DP=106;Dels=0.02;ExcessHet=3.0103;FS=0.793;HaplotypeScore=7.4585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.38;ReadPosRankSum=0.808;SB=-4.790e+02;SOR=0.941;VQSLOD=4.80;culprit=QD GT:AD:DP:GQ:PL 0/1:66,37:104:99:788,0,1970 1 12918891 rs77229081 A C 1200.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.270;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-1.930;SB=-4.420e+02;SOR=0.547;VQSLOD=8.51;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:59,42:101:99:1229,0,1629 1 12919064 rs3204790 T G 2315.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.709;DB;DP=186;Dels=0.00;ExcessHet=3.0103;FS=3.361;HaplotypeScore=5.2387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=0.416;SB=-1.461e+03;SOR=0.480;VQSLOD=5.63;culprit=DP GT:AD:DP:GQ:PL 0/1:96,90:186:99:2344,0,2493 1 12919111 rs9728577 G A 1838.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.338;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=4.201;HaplotypeScore=1.3302;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-2.715;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.372;SB=-8.730e+02;SOR=0.422;VQSLOD=5.800e-03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:74,73:147:99:1867,0,2126 1 12919173 . A G 1108.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.027;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.11;MQ0=0;MQRankSum=-3.454;QD=14.98;ReadPosRankSum=-0.384;SB=-2.030e+02;SOR=0.758;VQSLOD=1.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,38:74:99:1137,0,1035 1 12919353 . G T 188.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.583;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.99;MQ0=0;MQRankSum=-2.127;QD=11.10;ReadPosRankSum=1.515;SB=-1.765e+00;SOR=1.270;VQSLOD=1.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,7:17:99:217,0,318 1 12919360 rs111283876 A T 182.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.629;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=58.10;MQ0=0;MQRankSum=-2.230;QD=10.15;ReadPosRankSum=1.722;SB=0.00;SOR=0.368;VQSLOD=1.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,7:18:99:211,0,348 1 12919891 rs75411676 G T 1788.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.155;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.630;HaplotypeScore=2.7260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=1.869;SB=-7.650e+02;SOR=0.761;VQSLOD=7.88;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:77,67:144:99:1817,0,2006 1 12919934 . A G 2460.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.046;DP=183;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.45;ReadPosRankSum=-0.514;SB=-1.187e+03;SOR=0.694;VQSLOD=5.90;culprit=DP GT:AD:DP:GQ:PL 0/1:94,89:183:99:2489,0,2324 1 12920139 rs201144653 T C 372.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.627;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6639;MLEAC=1;MLEAF=0.500;MQ=57.91;MQ0=0;MQRankSum=-5.425;QD=8.47;ReadPosRankSum=-0.103;SB=-1.765e+00;SOR=0.597;VQSLOD=0.781;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,13:44:99:401,0,1003 1 12920140 rs202064543 G A 309.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.676;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6639;MLEAC=1;MLEAF=0.500;MQ=57.86;MQ0=0;MQRankSum=-5.662;QD=7.20;ReadPosRankSum=0.312;SB=-1.765e+00;SOR=0.533;VQSLOD=0.602;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,12:43:99:338,0,1068 1 12920143 rs200616844 C T 305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.419;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5971;MLEAC=1;MLEAF=0.500;MQ=57.64;MQ0=0;MQRankSum=-5.346;QD=7.84;ReadPosRankSum=-0.320;SB=0.00;SOR=0.195;VQSLOD=0.667;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,12:39:99:334,0,977 1 12920191 rs57640138 T C 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.163;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.16;MQ0=0;MQRankSum=-3.667;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=0.307;SB=0.00;SOR=0.260;VQSLOD=2.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,5:15:99:163,0,323 1 12920200 rs60849423 G A 129.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.60;MQ0=0;MQRankSum=-3.224;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=-0.869;SB=0.00;SOR=0.446;VQSLOD=2.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,5:12:99:158,0,247 1 12920330 rs58607521 A C 103.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.53;MQ0=2;MQRankSum=-0.751;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=0.231;SB=0.00;SOR=0.527;VQSLOD=3.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,4:11:99:132,0,173 1 12920622 rs140909199 C T 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.612;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=49.03;MQ0=0;MQRankSum=-3.567;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=0.272;SB=-3.200e+01;SOR=1.244;VQSLOD=2.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,11:18:99:315,0,180 1 12920859 . C A 88.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.45;MQ0=0;MQRankSum=-2.823;QD=8.88;ReadPosRankSum=1.242;SB=0.00;SOR=0.412;VQSLOD=0.924;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,4:10:99:117,0,207 1 12920891 rs1856643 G T 70.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.678;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.23;MQ0=0;MQRankSum=1.841;QD=3.72;ReadPosRankSum=-2.254;SB=0.00;SOR=0.093;VQSLOD=1.22;culprit=QD GT:AD:DP:GQ:PL 0/1:15,4:19:99:99,0,546 1 12920892 rs1856644 G T 69.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.80;MQ0=0;MQRankSum=1.694;QD=3.32;ReadPosRankSum=-1.568;SB=0.00;SOR=0.074;VQSLOD=1.39;culprit=QD GT:AD:DP:GQ:PL 0/1:17,4:21:98:98,0,554 1 12920946 rs200771181 A G 530.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.028;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7186;MLEAC=1;MLEAF=0.500;MQ=56.21;MQ0=0;MQRankSum=-2.172;QD=9.48;ReadPosRankSum=0.984;SB=-1.765e+00;SOR=0.859;VQSLOD=0.369;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,20:57:99:559,0,1176 1 12942414 rs28438506 G T 328.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.798;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.5187;MLEAC=1;MLEAF=0.500;MQ=46.02;MQ0=1;MQRankSum=-2.948;QD=8.65;ReadPosRankSum=0.322;SB=-1.765e+00;SOR=1.287;VQSLOD=0.854;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,16:38:99:357,0,573 1 12942430 rs78990759 G C 92.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.7902;MLEAC=1;MLEAF=0.500;MQ=46.98;MQ0=0;MQRankSum=-2.089;QD=3.87;ReadPosRankSum=-0.200;SB=0.00;SOR=0.127;VQSLOD=1.71;culprit=QD GT:AD:DP:GQ:PL 0/1:18,6:25:99:121,0,602 1 12942440 rs201241704 C G 111.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.7529;MLEAC=1;MLEAF=0.500;MQ=46.21;MQ0=0;MQRankSum=0.935;QD=5.32;ReadPosRankSum=0.621;SB=0.00;SOR=0.117;VQSLOD=1.65;culprit=QD GT:AD:DP:GQ:PL 0/1:16,5:21:99:140,0,475 1 12942446 rs2982074 G C 110.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9596;MLEAC=1;MLEAF=0.500;MQ=45.07;MQ0=0;MQRankSum=-2.506;QD=6.92;ReadPosRankSum=-0.272;SB=0.00;SOR=0.340;VQSLOD=1.95;culprit=QD GT:AD:DP:GQ:PL 0/1:10,6:16:99:139,0,311 1 13052589 rs71225489 A T 204.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.733;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.57;MQ0=0;MQRankSum=-2.904;QD=12.05;ReadPosRankSum=1.318;SB=0.00;SOR=0.425;VQSLOD=1.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,7:17:99:233,0,311 1 13171902 rs202191791 A G 129.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.759;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=45.38;MQ0=0;MQRankSum=-2.771;QD=5.41;ReadPosRankSum=0.200;SB=0.00;SOR=0.127;VQSLOD=1.86;culprit=QD GT:AD:DP:GQ:PL 0/1:18,6:24:99:158,0,551 1 13172014 rs202160159 C T 868.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.348;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=51.83;MQ0=0;MQRankSum=-1.980;QD=8.35;ReadPosRankSum=0.051;SB=-3.980e+02;SOR=0.706;VQSLOD=0.810;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,38:104:99:897,0,1851 1 13172954 rs201012660 A G 502.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.695;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.42;MQ0=2;MQRankSum=-2.108;QD=12.26;ReadPosRankSum=-0.239;SB=-2.390e+02;SOR=0.818;VQSLOD=2.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,21:41:99:531,0,512 1 13173016 rs1852947 A G 546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQ0=0;MQRankSum=1.429;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=-0.726;SB=-3.320e+02;SOR=0.776;VQSLOD=3.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,25:51:99:575,0,575 1 13173080 rs56115458 T G 444.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.137;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-0.832;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=-0.593;SB=-1.410e+02;SOR=0.639;VQSLOD=3.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,16:29:99:473,0,360 1 13183439 rs28713604 T C 8233.77 PASS AC=2;AF=1.00;AN=2;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6598;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=33.07;SB=-3.969e+03;SOR=0.952;VQSLOD=3.39;culprit=DP GT:AD:DP:GQ:PL 1/1:0,249:250:99:8262,623,0 1 13802224 rs3795750 G A 711.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.66;SB=-3.080e+02;SOR=1.519;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:54:740,54,0 1 13802325 rs3013105 T C 2322.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.82;SB=-8.250e+02;SOR=1.708;VQSLOD=7.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2351,172,0 1 13910417 rs355025 C T 2555.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9305;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-8.440e+02;SOR=1.923;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2584,193,0 1 13910741 rs150088145 CGGA C 468.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;DB;DP=27;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.32;RPA=3,2;RU=GGA;ReadPosRankSum=1.621;SB=-5.976e+01;SOR=0.160;STR;VQSLOD=7.57;culprit=SOR GT:AD:DP:GQ:PL 0/1:11,10:27:99:506,0,530 1 13933855 rs35870640 A G 2056.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195;DB;DP=160;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-0.780;SB=-6.310e+02;SOR=0.755;VQSLOD=8.05;culprit=DP GT:AD:DP:GQ:PL 0/1:86,74:160:99:2085,0,2468 1 13936822 rs404658 G T 1719.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=-3.620e+02;SOR=2.833;VQSLOD=7.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1748,138,0 1 13937089 rs2487643 G T 2312.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-1.102e+03;SOR=1.270;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2341,178,0 1 13940864 rs2486188 C G 4605.77 PASS AC=2;AF=1.00;AN=2;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=-2.934e+03;SOR=0.814;VQSLOD=6.50;culprit=DP GT:AD:DP:GQ:PL 1/1:0,155:155:99:4634,334,0 1 14042309 rs7411176 G A 268.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.943;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=-1.088;SB=-1.765e+00;SOR=1.981;VQSLOD=5.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,9:17:99:297,0,239 1 14057258 rs2277 G A 115.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.24;ReadPosRankSum=0.511;SB=-3.401e+01;SOR=0.188;VQSLOD=9.27;culprit=QD GT:AD:DP:GQ:PL 0/1:11,5:16:99:144,0,357 1 14059395 rs33969518 T C 797.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.770;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=0.371;SB=-2.410e+02;SOR=0.569;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:27,28:55:99:826,0,717 1 14096821 rs1210110 T C 458.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=5.224;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-0.680;SB=-2.120e+02;SOR=0.214;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:22,18:40:99:487,0,628 1 14099763 rs10803426 C T 1502.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.968;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=2.666;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-0.547;SB=-3.670e+02;SOR=1.041;VQSLOD=7.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:75,55:130:99:1531,0,2030 1 14099898 rs1203677 A G 169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.279;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.125;SB=-1.765e+00;SOR=1.402;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:198,0,256 1 14105139 rs2076324 T A 656.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.932;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.438;HaplotypeScore=3.6655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=0.752;SB=-1.760e+02;SOR=1.214;VQSLOD=7.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,25:63:99:685,0,1153 1 14105298 rs1203678 G A 1240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.933;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=4.330;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=-0.234;SB=-5.440e+02;SOR=1.236;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 0/1:37,46:83:99:1269,0,1038 1 14106394 rs148293494 A ACTC 2097.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.880;DB;DP=91;ExcessHet=3.0103;FS=4.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.11;RPA=1,2;RU=CTC;ReadPosRankSum=1.325;SB=-8.040e+02;SOR=1.234;STR;VQSLOD=3.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,40:91:99:2135,0,2540 1 14109114 rs1203651 A G 984.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=2.858;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=1.836;SB=-5.650e+02;SOR=0.622;VQSLOD=6.89;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:45,40:85:99:1013,0,1074 1 14143003 rs1046331 A G 3327.77 PASS AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.20;SB=-2.111e+03;SOR=0.727;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,118:118:99:3356,247,0 1 14149505 rs2697970 C A 295.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.89;SB=-1.205e+02;SOR=1.802;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:324,24,0 1 14149601 rs2697969 C T 1160.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-5.090e+02;SOR=1.432;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:87:1189,87,0 1 14149622 rs2697968 T C 1247.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.00;SB=-6.180e+02;SOR=1.298;VQSLOD=4.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:96:1276,96,0 1 14149844 rs1046333 T A 561.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=0.00;SOR=5.670;VQSLOD=8.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:590,48,0 1 14220186 rs1358577 A G 1260.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.016;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.984;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=0.104;SB=-6.460e+02;SOR=0.972;VQSLOD=7.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,48:71:99:1289,0,598 1 15287168 rs41301991 C T 548.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=0.590;SB=-3.980e+02;SOR=0.616;VQSLOD=8.64;culprit=FS GT:AD:DP:GQ:PL 0/1:34,26:60:99:577,0,959 1 15386628 rs2073091 T C 2272.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.032;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=1.451;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.96;ReadPosRankSum=0.042;SB=-1.324e+03;SOR=0.532;VQSLOD=8.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,86:134:99:2301,0,1177 1 15390145 rs2076565 A G 981.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.857;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=1.932;HaplotypeScore=3.6220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=-1.049;SB=-3.140e+02;SOR=0.971;VQSLOD=7.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,38:88:99:1010,0,1342 1 15390178 rs2076564 C T 443.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.062;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.07;ReadPosRankSum=0.052;SB=-1.260e+02;SOR=0.722;VQSLOD=8.57;culprit=QD GT:AD:DP:GQ:PL 0/1:34,21:55:99:472,0,1033 1 15390211 rs2076563 G A 267.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.008;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=-0.022;SB=-2.901e+01;SOR=0.664;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:18,11:29:99:296,0,580 1 15392355 . C A 742.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.949;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.12;ReadPosRankSum=-0.394;SB=-4.076e+01;SOR=0.312;VQSLOD=8.09;culprit=FS GT:AD:DP:GQ:PL 0/1:18,23:41:99:771,0,530 1 15427934 rs10927676 C T 104.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.227;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=-0.888;SB=-3.000e+01;SOR=1.179;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:133,0,178 1 15427982 rs502918 G A 581.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.552;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=4.077;HaplotypeScore=2.8651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=-0.444;SB=-6.000e+01;SOR=1.721;VQSLOD=6.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,19:36:99:610,0,470 1 15428358 rs477953 T C 1410.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7216;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.06;SB=-5.490e+02;SOR=1.662;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1439,105,0 1 15438990 rs10803354 G A 2285.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-9.810e+02;SOR=1.457;VQSLOD=7.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2314,172,0 1 15490865 rs61561984 T A 2183.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-9.450e+02;SOR=1.483;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2212,163,0 1 15497727 rs6429722 T C 4488.77 PASS AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-2.545e+03;SOR=0.963;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,148:148:99:4517,328,0 1 15497844 rs10429935 T A 3435.77 PASS AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;SB=-1.263e+03;SOR=1.898;VQSLOD=4.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,113:113:99:3464,262,0 1 15497954 rs6689923 A G 1158.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.36;SB=-8.297e+01;SOR=4.615;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:87:1187,87,0 1 15541537 rs3753314 C T 1335.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-4.160e+02;SOR=2.200;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1364,102,0 1 15599025 rs75432354 G A 524.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=2.627;SB=-5.300e+01;SOR=0.582;VQSLOD=8.52;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:29,19:49:99:553,0,926 1 15599069 rs56987602 G A 391.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=-0.468;SB=-4.176e+01;SOR=0.299;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 0/1:10,13:23:99:420,0,325 1 15650784 rs3765354 T G 161.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=0.000;SB=-4.276e+01;SOR=0.175;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:190,0,234 1 15650791 rs3765355 G C 383.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.067;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=-1.072;SB=-7.597e+01;SOR=0.148;VQSLOD=9.20;culprit=SOR GT:AD:DP:GQ:PL 0/1:9,13:22:99:412,0,292 1 15651062 rs3765356 A G 305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.329;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=-0.026;SB=-6.100e+01;SOR=0.540;VQSLOD=10.34;culprit=FS GT:AD:DP:GQ:PL 0/1:14,12:26:99:334,0,474 1 15653503 rs7532559 A G 772.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.687;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=-0.010;SB=-3.590e+02;SOR=0.356;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:19,32:52:99:801,0,326 1 15653563 rs3765357 C T 1190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.878;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=3.022;HaplotypeScore=6.4688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=0.505;SB=-6.890e+02;SOR=0.389;VQSLOD=10.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,46:83:99:1219,0,904 1 15653872 rs10127456 G A 229.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.555;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=0.032;SB=-1.765e+00;SOR=0.892;VQSLOD=10.09;culprit=FS GT:AD:DP:GQ:PL 0/1:15,8:23:99:258,0,486 1 15668276 rs763821 G A 619.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.955;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.084;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-0.774;SB=-3.400e+02;SOR=0.498;VQSLOD=9.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,23:52:99:648,0,826 1 15671483 rs486089 G A 348.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.684;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=4.548;HaplotypeScore=1.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=-1.014;SB=-1.800e+02;SOR=0.154;VQSLOD=10.30;culprit=FS GT:AD:DP:GQ:PL 0/1:9,15:24:99:377,0,246 1 15687059 rs4661330 A G 182.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.522;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=0.904;SB=-3.500e+01;SOR=0.859;VQSLOD=10.10;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:211,0,155 1 15714831 rs6669577 C T 447.78 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=9.031;HaplotypeScore=2.8653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.99;ReadPosRankSum=-2.087;SB=-1.765e+00;SOR=5.421;VQSLOD=2.44;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:2,14:16:26:476,0,26 1 15723843 rs2294490 G A 1054.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.722;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.859;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.201;SB=-5.030e+02;SOR=0.855;VQSLOD=8.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,45:83:99:1083,0,1034 1 15724033 rs2253372 A G 853.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.827;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=3.060;HaplotypeScore=2.6984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=0.308;SB=-2.230e+02;SOR=0.269;VQSLOD=10.28;culprit=SOR GT:AD:DP:GQ:PL 0/1:22,32:54:99:882,0,618 1 15754484 rs2473356 T C 2226.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;SB=-1.475e+03;SOR=0.693;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2255,160,0 1 15767036 rs497078 C T 1203.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.735;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=2.389;HaplotypeScore=4.5176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=-1.901;SB=-6.810e+02;SOR=0.656;VQSLOD=7.24;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:69,48:118:99:1232,0,1772 1 15769876 . G GC 3200.73 PASS AC=2;AF=1.00;AN=2;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.55;MQ0=0;QD=29.92;RPA=2,3;RU=C;SB=-1.167e+03;SOR=1.409;STR;VQSLOD=4.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:3238,235,0 1 15770102 rs545634 G A 1550.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=0.678;SB=-6.580e+02;SOR=0.653;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:35,58:93:99:1579,0,972 1 15772057 rs10927786 G T 1027.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.252;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=-1.149;SB=-1.390e+02;SOR=0.495;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:32,33:65:99:1056,0,962 1 15772933 rs555015 A G 812.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.49;SB=-8.297e+01;SOR=4.003;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:63:841,63,0 1 15783096 rs5772641 GA G 2201.73 PASS AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.53;RPA=10,9;RU=A;SB=-6.720e+02;SOR=1.911;STR;VQSLOD=5.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:86:99:2239,249,0 1 15783117 . C CA 3930.73 PASS AC=2;AF=1.00;AN=2;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;RPA=1,2;RU=A;SB=-1.480e+03;SOR=1.408;STR;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:90:99:3968,268,0 1 15788269 rs3737696 A C 4427.77 PASS AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-2.413e+03;SOR=1.110;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,146:146:99:4456,322,0 1 15792426 rs2901964 C G 149.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=1.122;SB=0.00;SOR=0.693;VQSLOD=10.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,5:11:99:178,0,170 1 15792800 rs60125415 G A 141.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=1.063;SB=-3.077e+01;SOR=0.223;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:170,0,164 1 15793913 rs1042010 G A 629.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=-0.027;SB=-3.360e+02;SOR=0.792;VQSLOD=8.70;culprit=FS GT:AD:DP:GQ:PL 0/1:39,26:65:99:658,0,934 1 15802468 rs141820246 GA G 944.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;DB;DP=94;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.38;RPA=10,9;RU=A;ReadPosRankSum=-0.207;SB=-4.060e+02;SOR=0.536;STR;VQSLOD=7.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,47:94:99:982,0,1017 1 15808198 rs7520335 C T 256.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.446;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.78;MQ0=0;MQRankSum=-2.005;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-0.163;SB=-3.777e+01;SOR=0.223;VQSLOD=3.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,10:19:99:285,0,275 1 15808702 rs4661635 C T 778.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.798;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=1.601;SB=-9.200e+01;SOR=0.992;VQSLOD=9.08;culprit=FS GT:AD:DP:GQ:PL 0/1:27,27:54:99:807,0,831 1 15808767 . G A 1573.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.826;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=0.231;SB=-8.330e+02;SOR=0.711;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:45,64:110:99:1602,0,1117 1 15808872 rs3766160 G A 1563.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.310;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=1.559;HaplotypeScore=3.5124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-1.256;SB=-6.950e+02;SOR=0.905;VQSLOD=7.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,65:116:99:1592,0,1232 1 15812432 rs6429745 A G 1437.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-3.530e+02;SOR=2.687;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1466,117,0 1 15812665 rs2861484 G T 458.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.85;ReadPosRankSum=-1.045;SB=-3.577e+01;SOR=0.569;VQSLOD=9.10;culprit=FS GT:AD:DP:GQ:PL 0/1:7,14:21:99:487,0,216 1 15813751 rs2011159 C T 1662.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.17;SB=-6.140e+02;SOR=1.692;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1691,123,0 1 15813969 rs3737704 A C 941.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-1.245e+02;SOR=3.767;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:970,72,0 1 15820307 . A AC 571.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;DP=40;ExcessHet=3.0103;FS=1.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.29;RPA=4,5;RU=C;ReadPosRankSum=-0.054;SB=-1.360e+02;SOR=0.374;STR;VQSLOD=8.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,19:40:99:609,0,673 1 15820576 rs2020900 T A 949.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SB=-3.120e+02;SOR=1.942;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:978,72,0 1 15820607 rs2020895 A G 669.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.49;SB=-1.981e+02;SOR=2.093;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:51:698,51,0 1 15820618 rs2020898 A G 582.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=37.55;SB=-8.497e+01;SOR=3.126;VQSLOD=4.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:611,45,0 1 15821673 rs4646092 C T 393.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.859;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.971;SB=-3.400e+01;SOR=0.770;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:13,14:27:99:422,0,408 1 15821959 rs2020904 A G 879.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.760;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=3.466;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.75;ReadPosRankSum=1.242;SB=-4.110e+02;SOR=0.383;VQSLOD=8.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,32:64:99:908,0,851 1 15822043 rs4646091 T C 244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.750;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.74;ReadPosRankSum=0.494;SB=-6.100e+01;SOR=1.214;VQSLOD=7.20;culprit=QD GT:AD:DP:GQ:PL 0/1:17,11:28:99:273,0,428 1 15822073 rs4646090 A G 306.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.430;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=0.114;SB=-7.697e+01;SOR=0.269;VQSLOD=9.08;culprit=FS GT:AD:DP:GQ:PL 0/1:5,11:16:99:335,0,151 1 15832383 rs1800614 G T 758.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.24;SB=-4.076e+01;SOR=4.712;VQSLOD=3.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:787,60,0 1 15832543 rs1052576 T C 2729.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.04;SB=-1.739e+03;SOR=0.736;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:2758,205,0 1 15834297 rs2020903 G A 881.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;SB=-2.341e+02;SOR=2.387;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:69:910,69,0 1 15834491 rs4646032 G A 2066.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-1.018e+03;SOR=1.296;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2095,150,0 1 15844615 . A G 3376.77 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.88;SB=-1.067e+03;SOR=2.366;VQSLOD=4.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,113:113:99:3405,265,0 1 15844926 rs1820205 C T 3624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=-9.210e+02;SOR=2.281;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,109:109:99:3653,274,0 1 15845022 rs143270719 C CTGAG 2266.73 PASS AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.58;MQ0=0;QD=31.50;SB=-3.023e+02;SOR=3.611;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:37:99:2304,99,0 1 15850613 rs1052571 G A 486.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.53;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.18;SB=-3.400e+02;SOR=0.990;VQSLOD=4.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:36:515,36,0 1 15860563 rs6703016 T A 311.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-4.076e+01;SOR=3.258;VQSLOD=7.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:340,27,0 1 15860803 rs11583306 C T 1288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.678;HaplotypeScore=2.9461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=-0.331;SB=-8.560e+02;SOR=0.594;VQSLOD=9.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:69,53:122:99:1317,0,1747 1 15873386 rs7515244 A G 911.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.540;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.985;HaplotypeScore=18.8470;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=1.204;SB=-3.770e+02;SOR=0.919;VQSLOD=7.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,37:72:99:940,0,718 1 15873410 . CTT C 410.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.906;DP=49;ExcessHet=3.0103;FS=1.607;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=0.000;QD=11.10;RPA=19,17;RU=T;ReadPosRankSum=0.985;SB=-9.300e+01;SOR=1.274;STR;VQSLOD=5.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,20:49:99:448,0,381 1 15874961 rs2295626 T A 1112.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=4.981;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=0.922;SB=-6.670e+02;SOR=0.330;VQSLOD=8.21;culprit=FS GT:AD:DP:GQ:PL 0/1:67,49:116:99:1141,0,1714 1 15886344 rs11583040 A C 194.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=-0.091;SB=0.00;SOR=1.270;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:223,0,122 1 15890342 rs71002909 CA C 66.74 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.13;RPA=16,15;RU=A;ReadPosRankSum=-0.275;SB=0.00;SOR=0.569;STR;VQSLOD=7.07;culprit=QD GT:AD:DP:GQ:PL 0/1:7,6:13:27:104,0,27 1 15890355 rs6429750 A G 42.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=12.788;HaplotypeScore=8.6605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.04;ReadPosRankSum=-2.612;SB=-6.797e+01;SOR=0.004;VQSLOD=3.50;culprit=QD GT:AD:DP:GQ:PL 0/1:15,6:21:71:71,0,461 1 15892415 rs2236215 A C 465.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.615;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.225;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=-0.063;SB=-1.280e+02;SOR=1.029;VQSLOD=7.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,17:49:99:494,0,859 1 15900259 rs6678742 G A 323.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.788;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=4.314;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=-1.027;SB=-2.203e+01;SOR=1.961;VQSLOD=5.39;culprit=QD GT:AD:DP:GQ:PL 0/1:21,14:35:99:352,0,585 1 15901121 rs61213091 C T 200.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=0.052;SB=-6.600e+01;SOR=0.446;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:9,7:16:99:229,0,274 1 15904318 rs11544523 C T 1228.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.789;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=0.114;SB=-4.930e+02;SOR=0.811;VQSLOD=7.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,48:98:99:1257,0,1429 1 15906696 rs34166013 CT C 78.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=1.005;QD=3.94;RPA=22,21;RU=T;ReadPosRankSum=2.396;SB=0.00;SOR=0.527;STR;VQSLOD=0.706;culprit=QD GT:AD:DP:GQ:PL 0/1:11,9:38:99:116,0,139 1 15909547 rs6429756 G A 854.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.47;SB=-1.603e+02;SOR=2.910;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:69:883,69,0 1 15909624 rs111921608 TGAGTACAG T 6286.73 PASS AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.01;SB=-1.785e+03;SOR=1.919;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:57:99:6324,169,0 1 15909744 rs11580170 C T 1169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=2.366;HaplotypeScore=8.1556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=0.113;SB=-6.350e+02;SOR=0.981;VQSLOD=7.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:73,50:123:99:1198,0,1767 1 15909850 rs6429757 C G 2274.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.04;SB=-8.870e+02;SOR=1.545;VQSLOD=7.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:72:99:2303,169,0 1 15909895 rs6429758 A G 1326.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.64;SB=-6.590e+02;SOR=1.298;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1355,99,0 1 15910003 rs6429759 C T 372.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.89;SB=0.00;SOR=4.977;VQSLOD=9.30;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,11:11:33:401,33,0 1 15911010 rs10927807 T G 1218.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.85;SB=-3.610e+02;SOR=2.179;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:93:1247,93,0 1 15911031 rs10927808 T G 1273.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-4.520e+02;SOR=1.981;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:96:1302,96,0 1 15911131 rs59475085 G A 724.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.043;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.876;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=-0.365;SB=-4.160e+02;SOR=0.914;VQSLOD=7.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,33:77:99:753,0,1258 1 15911349 rs3737705 G A 485.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.371;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=1.272;SB=-1.050e+02;SOR=0.784;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:12,18:30:99:514,0,363 1 15959886 rs3795762 C G 975.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.65;SB=-1.911e+02;SOR=2.546;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:1004,72,0 1 15965025 rs71002915 C CT 98.82 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.60;RPA=22,23;RU=T;ReadPosRankSum=0.338;SB=0.00;SOR=2.147;STR;VQSLOD=4.76;culprit=QD GT:AD:DP:GQ:PL 0/1:3,10:25:17:136,0,17 1 16051584 rs4661647 C T 292.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-4.176e+01;SOR=3.056;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,9:10:24:321,24,0 1 16051759 . G A 424.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.478;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.455;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.65;ReadPosRankSum=-0.284;SB=-2.050e+02;SOR=1.112;VQSLOD=6.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,15:29:99:453,0,417 1 16095316 rs2271545 C T 350.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=0.00;SOR=4.804;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:379,30,0 1 16096893 rs12146078 C T 292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.751;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=0.440;SB=-4.076e+01;SOR=0.330;VQSLOD=9.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,10:18:99:321,0,225 1 16096934 rs10927851 C T 1176.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.69;SB=-1.901e+02;SOR=3.383;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:37:90:1205,90,0 1 16097237 rs10803398 G A 575.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=0.00;SOR=5.549;VQSLOD=8.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:604,45,0 1 16110815 rs11576404 G A 296.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.360;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=0.846;SB=0.00;SOR=0.610;VQSLOD=10.11;culprit=FS GT:AD:DP:GQ:PL 0/1:11,10:21:99:325,0,322 1 16256007 rs848209 T C 610.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.425;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=7.677;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=0.361;SB=-2.340e+02;SOR=1.206;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 0/1:33,22:55:99:639,0,941 1 16259813 rs848210 A G 899.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.132;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=2.069;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-1.561;SB=-3.740e+02;SOR=1.056;VQSLOD=7.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,37:72:99:928,0,951 1 16261888 . C T 1408.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.683;DP=136;Dels=0.00;ExcessHet=3.0103;FS=2.182;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.36;ReadPosRankSum=0.024;SB=-7.590e+02;SOR=0.889;VQSLOD=5.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:80,56:136:99:1437,0,2314 1 16265060 rs200567875 CTT C 216.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=0.385;QD=13.55;RPA=19,17;RU=T;ReadPosRankSum=-0.755;SB=-6.979e+01;SOR=0.223;STR;VQSLOD=1.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,7:16:91:199,0,91 1 16265422 rs848214 A G 365.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.575;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.144;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.71;ReadPosRankSum=-0.223;SB=-7.900e+01;SOR=1.368;VQSLOD=7.01;culprit=QD GT:AD:DP:GQ:PL 0/1:27,15:42:99:394,0,725 1 16271260 rs9661939 G A 858.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.435;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-0.103;SB=-5.560e+02;SOR=0.674;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:30,36:66:99:887,0,790 1 16272250 rs848217 A G 273.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.205;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=7.371;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=1.653;SB=-1.905e+01;SOR=2.584;VQSLOD=5.24;culprit=FS GT:AD:DP:GQ:PL 0/1:16,11:27:99:302,0,499 1 16272409 rs9429277 C T 1738.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.309;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=7.632;HaplotypeScore=2.7602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=-1.046;SB=-8.550e+02;SOR=0.287;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 0/1:54,65:119:99:1767,0,1569 1 16302417 . T TCCGCCG 1179.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.35;RPA=2,4;RU=CCG;ReadPosRankSum=0.781;SB=-2.480e+02;SOR=0.460;STR;VQSLOD=8.42;culprit=FS GT:AD:DP:GQ:PL 0/1:19,15:34:99:1217,0,1515 1 16314900 rs848298 T C 345.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-1.991e+02;SOR=0.859;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:374,27,0 1 16330816 rs1763617 C T 563.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.826;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.23;ReadPosRankSum=-0.171;SB=-2.890e+02;SOR=0.744;VQSLOD=7.95;culprit=QD GT:AD:DP:GQ:PL 0/1:49,29:78:99:592,0,1244 1 16330901 rs1763616 C T 314.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.314;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=6.505;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.74;ReadPosRankSum=0.655;SB=-1.709e+01;SOR=2.093;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 0/1:24,12:36:99:343,0,654 1 16330937 rs1763615 C T 153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=-0.760;SB=-1.765e+00;SOR=1.085;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:10,6:16:99:182,0,290 1 16332336 . G T 484.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.485;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.85;ReadPosRankSum=0.334;SB=-1.940e+02;SOR=0.861;VQSLOD=8.44;culprit=FS GT:AD:DP:GQ:PL 0/1:15,20:35:99:513,0,336 1 16332571 rs1763612 C T 2071.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=1.238;HaplotypeScore=11.8820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-1.442;SB=-1.117e+03;SOR=0.526;VQSLOD=7.31;culprit=DP GT:AD:DP:GQ:PL 0/1:90,75:165:99:2100,0,2471 1 16342237 rs1739840 A G 946.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.65;SB=-3.230e+02;SOR=1.688;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:75:975,75,0 1 16343815 rs1739845 C A 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.710;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=-0.027;SB=-1.765e+00;SOR=1.609;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 0/1:13,12:25:99:375,0,404 1 16343835 rs1763596 C T 514.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.28;SB=0.00;SOR=5.784;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:45:543,45,0 1 16344360 rs732286 A G 1308.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.92;SB=-7.060e+02;SOR=0.954;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1337,99,0 1 16344402 rs945416 G A 1306.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.39;SB=-7.640e+02;SOR=0.941;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1335,99,0 1 16344494 rs1572381 G A 1292.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=-6.660e+02;SOR=1.230;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:45:96:1321,96,0 1 16344625 rs945417 C G 780.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.03;SB=-4.080e+02;SOR=1.220;VQSLOD=5.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:60:809,60,0 1 16344664 rs872222 G A 209.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=1.433;SB=-6.500e+01;SOR=1.501;VQSLOD=6.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,8:15:99:238,0,173 1 16344683 rs872221 C T 149.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=-0.563;SB=-1.010e+02;SOR=0.346;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:178,0,233 1 16345619 rs945422 T C 660.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.04;SB=-1.115e+02;SOR=3.056;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:51:689,51,0 1 16345735 rs1544131 C T 849.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.701;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.909;HaplotypeScore=1.6648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=-0.262;SB=-3.910e+02;SOR=0.550;VQSLOD=9.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,34:78:99:878,0,1256 1 16346009 . G GC 552.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;DP=48;ExcessHet=3.0103;FS=3.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.17;RPA=5,6;RU=C;ReadPosRankSum=0.619;SB=-5.600e+01;SOR=1.802;STR;VQSLOD=4.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,19:48:99:590,0,619 1 16349080 rs3738637 G A 257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.83;ReadPosRankSum=0.446;SB=-3.500e+01;SOR=1.802;VQSLOD=8.67;culprit=FS GT:AD:DP:GQ:PL 0/1:4,9:13:99:286,0,114 1 16350123 rs2017577 C G 486.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.77;SB=-3.677e+01;SOR=3.912;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:515,39,0 1 16351275 rs10927887 A G 481.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.34;SB=-1.513e+02;SOR=2.179;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:39:510,39,0 1 16352937 rs1010069 G A 459.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-2.650e+02;SOR=0.818;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:488,36,0 1 16353400 rs9442216 T C 803.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-6.097e+01;SOR=3.912;VQSLOD=4.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:832,60,0 1 16354642 . A AT 766.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.842;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQ0=0;MQRankSum=1.048;QD=18.26;RPA=1,2;RU=T;ReadPosRankSum=-2.303;SB=-1.890e+02;SOR=0.693;STR;VQSLOD=2.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,21:42:99:804,0,808 1 16355638 rs79751787 T A 248.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3286;MLEAC=1;MLEAF=0.500;MQ=56.63;MQ0=0;MQRankSum=0.792;POSITIVE_TRAIN_SITE;QD=9.21;ReadPosRankSum=0.269;SB=-1.840e+02;SOR=0.582;VQSLOD=2.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,12:27:99:277,0,390 1 16356501 rs1805152 G A 1286.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.38;SB=-8.110e+02;SOR=0.823;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:96:1315,96,0 1 16356583 rs3737218 C T 282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.104;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.120;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.57;ReadPosRankSum=-1.357;SB=-2.000e+02;SOR=0.318;VQSLOD=8.83;culprit=QD GT:AD:DP:GQ:PL 0/1:18,15:33:99:311,0,452 1 16356870 rs9442191 G A 519.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.352;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.79;ReadPosRankSum=1.785;SB=0.00;SOR=1.358;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:9,16:25:99:548,0,246 1 16358148 rs2015509 T C 2402.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.47;SB=-7.180e+02;SOR=2.062;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2431,181,0 1 16358685 rs6669935 C G 874.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.51;SB=-5.710e+02;SOR=1.022;VQSLOD=5.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:63:903,63,0 1 16358932 rs10803407 T C 2312.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.28;SB=-1.147e+03;SOR=1.281;VQSLOD=5.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2341,172,0 1 16359051 rs10927892 C A 1950.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.12;SB=-8.930e+02;SOR=1.508;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:1979,141,0 1 16359052 rs10927893 A G 1902.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.40;SB=-9.160e+02;SOR=1.508;VQSLOD=5.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:1931,138,0 1 16359106 rs10803408 C T 1007.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.59;SB=-1.603e+02;SOR=3.407;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:31:78:1036,78,0 1 16359123 rs9442217 A G 741.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.25;SB=0.00;SOR=5.994;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:770,57,0 1 16359827 rs3738633 A G 360.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.91;SB=-7.397e+01;SOR=2.303;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:389,30,0 1 16361916 rs11811753 G A 463.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=4;MQRankSum=1.947;QD=21.08;ReadPosRankSum=1.736;SB=-1.881e+02;SOR=0.776;VQSLOD=1.83;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,20:22:36:492,36,0 1 16362543 rs61772376 C G 827.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.519;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=40.55;MQ0=0;MQRankSum=1.823;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.253;SB=-1.040e+02;SOR=1.042;VQSLOD=0.137;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,28:55:99:856,0,649 1 16362561 rs55731534 C G 2100.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.28;SB=-6.680e+02;SOR=2.043;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2129,157,0 1 16362621 rs2009044 G A 4141.77 PASS AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.1959;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.17;SB=-2.013e+03;SOR=1.329;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,142:143:99:4170,304,0 1 16362661 rs3978493 A C 5277.77 PASS AC=2;AF=1.00;AN=2;DB;DP=186;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7258;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.38;SB=-3.147e+03;SOR=0.982;VQSLOD=2.89;culprit=DP GT:AD:DP:GQ:PL 1/1:0,186:186:99:5306,385,0 1 16366167 rs2019654 G A 400.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.63;SB=-1.801e+02;SOR=1.329;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:33:429,33,0 1 16371067 rs2015352 G T 432.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=-0.105;SB=-2.270e+02;SOR=0.853;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:22,19:41:99:461,0,589 1 16371872 rs6604908 C G 215.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=-0.946;SB=-6.600e+01;SOR=0.836;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:8,9:17:99:244,0,201 1 16371932 rs6604909 A C 852.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-2.511e+02;SOR=2.387;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:63:881,63,0 1 16372003 rs6604910 G C 411.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.593;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=-1.252;SB=-1.270e+02;SOR=0.804;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:26,13:39:99:440,0,698 1 16373124 rs5257 A G 649.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.07;SB=-4.630e+02;SOR=0.765;VQSLOD=4.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:48:678,48,0 1 16373199 rs35820664 CCTT C 1521.73 PASS AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.20;SB=-7.440e+02;SOR=0.770;VQSLOD=4.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:29:75:1559,75,0 1 16373282 rs2095540 A G 394.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.67;SB=-2.590e+02;SOR=0.941;VQSLOD=5.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:30:423,30,0 1 16374533 rs2014562 G C 640.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-3.300e+02;SOR=1.230;VQSLOD=4.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:48:669,48,0 1 16374622 rs2863440 C G 848.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5286;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.38;SB=-5.140e+02;SOR=0.892;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:63:877,63,0 1 16374656 rs2902490 A G 818.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4890;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.49;SB=-1.811e+02;SOR=1.445;VQSLOD=5.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:66:847,66,0 1 16374994 rs1889788 C T 1843.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=6;POSITIVE_TRAIN_SITE;QD=27.52;SB=-7.130e+02;SOR=1.498;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:2,65:67:99:1872,138,0 1 16375063 rs1889789 C G 1925.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=4;POSITIVE_TRAIN_SITE;QD=27.91;SB=-1.223e+03;SOR=0.723;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 1/1:2,67:69:99:1954,141,0 1 16375064 rs1889790 A C 1886.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=4;POSITIVE_TRAIN_SITE;QD=27.34;SB=-1.138e+03;SOR=0.723;VQSLOD=5.94;culprit=FS GT:AD:DP:GQ:PL 1/1:2,67:69:99:1915,141,0 1 16375210 rs9633514 G A 469.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.748;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=-0.478;SB=-1.700e+02;SOR=0.387;VQSLOD=8.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,15:24:99:498,0,257 1 16375354 rs9442227 C T 630.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;SB=-2.720e+02;SOR=0.990;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:48:659,48,0 1 16375838 rs7545067 C G 859.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.73;SB=-3.960e+02;SOR=1.402;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:63:888,63,0 1 16376191 rs7367494 C T 538.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.67;SB=-3.677e+01;SOR=4.174;VQSLOD=7.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:45:567,45,0 1 16376230 rs35469726 A AT 1037.73 PASS AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=29.15;SB=-2.650e+02;SOR=1.893;VQSLOD=4.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:75:1075,75,0 1 16376232 rs59924562 A T 772.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=32.20;SB=-2.800e+02;SOR=1.802;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:801,60,0 1 16376238 rs34589727 TC T 956.73 PASS AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.20;RPA=6,5;RU=C;SB=-3.010e+02;SOR=1.781;STR;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:81:994,81,0 1 16376278 rs7365182 G A 1568.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-5.230e+02;SOR=2.078;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1597,117,0 1 16376319 rs7368151 T C 1878.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-8.790e+02;SOR=1.123;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1907,141,0 1 16376458 rs7368166 T C 1183.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.82;SB=-2.401e+02;SOR=2.964;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:90:1212,90,0 1 16376494 rs72651918 C G 356.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.462;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.99;ReadPosRankSum=-1.408;SB=-3.876e+01;SOR=0.481;VQSLOD=8.63;culprit=FS GT:AD:DP:GQ:PL 0/1:6,11:17:99:385,0,170 1 16378649 rs2297726 C G 686.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.924;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.306;SB=-2.701e+01;SOR=0.843;VQSLOD=8.84;culprit=FS GT:AD:DP:GQ:PL 0/1:31,23:54:99:715,0,1032 1 16379008 rs2050522 C T 1919.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.9966;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.28;SB=-2.750e+02;SOR=3.690;VQSLOD=5.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1948,147,0 1 16381718 rs1414498 T C 818.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.839;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.551;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.49;ReadPosRankSum=0.551;SB=-3.100e+01;SOR=1.871;VQSLOD=5.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,25:42:99:847,0,473 1 16381722 rs12691552 C T 825.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.618;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=-0.063;SB=-8.600e+01;SOR=0.941;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:16,27:43:99:854,0,468 1 16381792 rs12047858 T A 1519.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=1.811;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=-1.623;SB=-4.760e+02;SOR=0.917;VQSLOD=7.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,56:98:99:1548,0,1098 1 16381816 rs12029508 C T 1620.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.270;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-0.837;SB=-6.510e+02;SOR=0.698;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 0/1:52,63:115:99:1649,0,1392 1 16382086 rs2297727 C T 557.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.204;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=8.384;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.90;ReadPosRankSum=1.759;SB=-2.980e+02;SOR=0.090;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 0/1:15,18:33:99:586,0,454 1 16382718 rs12048851 T C 175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=0.124;SB=0.00;SOR=0.473;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:204,0,269 1 16382730 rs12030469 C T 160.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.315;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.93;ReadPosRankSum=0.797;SB=0.00;SOR=0.255;VQSLOD=9.16;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:189,0,410 1 16382791 rs12023153 G C 402.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=-1.259;SB=-1.040e+02;SOR=0.830;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 0/1:26,15:41:99:431,0,707 1 16382827 rs77508204 CTCT C 1100.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.46;ReadPosRankSum=-0.940;SB=-5.010e+02;SOR=0.560;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 0/1:28,21:49:99:1138,0,1625 1 16382831 rs61769890 T A 451.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.102;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-0.344;SB=-2.800e+02;SOR=0.515;VQSLOD=7.39;culprit=QD GT:AD:DP:GQ:PL 0/1:29,21:50:99:480,0,796 1 16382834 rs61769891 T A 445.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.058;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.25;ReadPosRankSum=-0.662;SB=-3.460e+02;SOR=0.493;VQSLOD=7.53;culprit=QD GT:AD:DP:GQ:PL 0/1:30,24:54:99:474,0,813 1 16382877 rs7517792 A G 687.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.887;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=1.277;SB=-4.710e+02;SOR=0.711;VQSLOD=6.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,31:70:99:716,0,961 1 16383448 rs10803415 A C 46.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.00;MQ0=0;MQRankSum=-3.109;POSITIVE_TRAIN_SITE;QD=2.03;ReadPosRankSum=0.771;SB=-2.124e+00;SOR=0.904;VQSLOD=2.37;culprit=QD GT:AD:DP:GQ:PL 0/1:17,6:23:75:75,0,385 1 16383668 rs6660218 T G 2220.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8736;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=-8.090e+02;SOR=1.842;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:75:99:2249,169,0 1 16383914 rs10927896 C T 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.557;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=-1.007;POSITIVE_TRAIN_SITE;QD=3.41;ReadPosRankSum=0.570;SB=-5.000e+01;SOR=0.489;VQSLOD=2.75;culprit=QD GT:AD:DP:GQ:PL 0/1:41,10:51:99:202,0,1168 1 16383986 rs6604912 G A 345.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.230;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.61;ReadPosRankSum=-0.341;SB=0.00;SOR=1.609;VQSLOD=8.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,11:16:99:374,0,154 1 16384986 rs28496958 G T 82.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=58.07;MQ0=0;MQRankSum=-3.195;POSITIVE_TRAIN_SITE;QD=6.37;ReadPosRankSum=-0.150;SB=0.00;SOR=0.223;VQSLOD=2.84;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:99:111,0,314 1 16384998 rs1807285 G C 90.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.325;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-2.986;POSITIVE_TRAIN_SITE;QD=6.05;ReadPosRankSum=0.065;SB=0.00;SOR=0.160;VQSLOD=2.97;culprit=QD GT:AD:DP:GQ:PL 0/1:11,4:15:99:119,0,384 1 16384999 rs1807284 G A 84.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-2.986;POSITIVE_TRAIN_SITE;QD=5.65;ReadPosRankSum=-0.066;SB=0.00;SOR=0.160;VQSLOD=2.88;culprit=QD GT:AD:DP:GQ:PL 0/1:11,4:15:99:113,0,388 1 16385042 rs77667563 G A 249.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=53.78;MQ0=0;MQRankSum=-2.559;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=-1.782;SB=-2.901e+01;SOR=0.960;VQSLOD=2.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,11:25:99:278,0,391 1 16385175 rs17853748 G A 1063.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.9864;MLEAC=1;MLEAF=0.500;MQ=45.41;MQ0=0;MQRankSum=-4.705;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=1.265;SB=-6.350e+02;SOR=0.791;VQSLOD=1.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,45:88:99:1092,0,1013 1 16385330 rs3978476 G T 505.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.25;MQ0=3;MQRankSum=-2.694;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=-0.195;SB=-1.450e+02;SOR=0.446;VQSLOD=3.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,21:29:99:534,0,218 1 16385698 rs2019460 A G 204.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.23;MQ0=0;MQRankSum=-3.923;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=0.360;SB=0.00;SOR=0.941;VQSLOD=2.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,9:16:99:233,0,234 1 16385738 rs33918184 GC G 391.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.55;MQ0=0;MQRankSum=-4.915;POSITIVE_TRAIN_SITE;QD=13.06;RPA=2,1;RU=C;ReadPosRankSum=-0.254;SB=0.00;SOR=0.384;STR;VQSLOD=2.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,12:31:99:429,0,727 1 16385768 rs10927897 G A 749.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.252;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8377;MLEAC=1;MLEAF=0.500;MQ=53.61;MQ0=0;MQRankSum=4.552;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=1.599;SB=-2.901e+01;SOR=1.238;VQSLOD=2.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,24:48:99:778,0,551 1 16385797 rs3978478 C G 1039.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.542;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9646;MLEAC=1;MLEAF=0.500;MQ=55.93;MQ0=0;MQRankSum=-3.066;QD=15.07;ReadPosRankSum=-0.102;SB=-2.390e+02;SOR=0.569;VQSLOD=1.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,35:70:99:1068,0,942 1 16386305 . G GC 207.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.78;MQ0=0;MQRankSum=-0.489;POSITIVE_TRAIN_SITE;QD=11.54;RPA=5,6;RU=C;ReadPosRankSum=-0.491;SB=-9.300e+01;SOR=0.765;STR;VQSLOD=2.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,8:18:99:245,0,310 1 16386416 rs9442230 G A 260.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.30;MQ0=0;MQRankSum=-1.465;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=-0.405;SB=-1.900e+02;SOR=0.446;VQSLOD=3.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,12:24:99:289,0,288 1 16386495 rs71510977 C T 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.241;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.82;MQ0=0;MQRankSum=-2.352;QD=13.44;ReadPosRankSum=1.485;SB=-1.765e+00;SOR=1.609;VQSLOD=1.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,6:13:99:203,0,191 1 16388646 rs2863456 T C 460.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.10;SB=-2.031e+02;SOR=1.739;VQSLOD=5.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:36:489,36,0 1 16460743 rs147659128 TAAC T 2167.73 PASS AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.05;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;RPA=2,1;RU=AAC;SB=-7.920e+02;SOR=1.292;STR;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:41:99:2205,120,0 1 16464673 rs2230597 G A 1080.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=3.648;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.43;ReadPosRankSum=1.170;SB=-4.150e+02;SOR=1.270;VQSLOD=6.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,37:62:99:1109,0,642 1 16474839 rs35127370 AC A 1338.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;DB;DP=81;ExcessHet=3.0103;FS=4.911;MLEAC=1;MLEAF=0.500;MQ=60.27;MQ0=0;MQRankSum=1.338;POSITIVE_TRAIN_SITE;QD=16.73;RPA=5,4;RU=C;ReadPosRankSum=-0.806;SB=-3.180e+02;SOR=1.385;STR;VQSLOD=0.210;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,43:81:99:1376,0,1186 1 16475123 rs6678616 C T 2064.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.621;DB;DP=185;Dels=0.00;ExcessHet=3.0103;FS=1.161;HaplotypeScore=1.9326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=-0.524;SB=-1.174e+03;SOR=0.551;VQSLOD=6.86;culprit=DP GT:AD:DP:GQ:PL 0/1:101,84:185:99:2093,0,2947 1 16475126 rs6678618 C T 2146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.364;DB;DP=188;Dels=0.00;ExcessHet=3.0103;FS=2.556;HaplotypeScore=1.9326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=-0.697;SB=-1.323e+03;SOR=0.503;VQSLOD=6.62;culprit=DP GT:AD:DP:GQ:PL 0/1:102,86:188:99:2175,0,2900 1 16525056 rs451260 G T 57.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.284;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.44;ReadPosRankSum=-1.286;SB=-3.100e+01;SOR=0.446;VQSLOD=8.39;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:86:86,0,291 1 16525549 rs221032 C T 687.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.150;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=0.221;SB=-1.850e+02;SOR=0.711;VQSLOD=9.96;culprit=FS GT:AD:DP:GQ:PL 0/1:31,24:55:99:716,0,916 1 16525887 rs221033 G C 244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.630;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.214;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.178;SB=-8.297e+01;SOR=0.105;VQSLOD=9.33;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,10:18:99:273,0,280 1 16528218 rs6676143 G T 678.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.145;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=0.603;SB=-3.390e+02;SOR=0.789;VQSLOD=6.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,24:45:99:707,0,608 1 16528233 rs221037 G A 494.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=1.375;SB=-2.840e+02;SOR=0.664;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:30,19:49:99:523,0,858 1 16528469 rs151266607 GCCTACCCTAGGGAC G 5423.73 PASS AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.37;SB=-3.430e+02;SOR=4.680;VQSLOD=4.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:50:96:5461,96,0 1 16528484 rs200992860 C T 1158.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.77;SB=-7.697e+01;SOR=4.680;VQSLOD=4.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:90:1187,90,0 1 16529117 rs221039 T C 295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.830;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.906;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=-0.334;SB=-1.420e+02;SOR=0.223;VQSLOD=9.37;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,13:26:99:324,0,366 1 16532803 rs221050 G A 1090.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=1.875;HaplotypeScore=2.7431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-0.610;SB=-5.600e+02;SOR=0.495;VQSLOD=9.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,40:78:99:1119,0,1059 1 16532848 rs221051 A G 1265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=4.260;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=0.689;SB=-7.040e+02;SOR=0.361;VQSLOD=9.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,47:83:99:1294,0,925 1 16533022 rs221052 C T 933.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=-2.380e+02;SOR=2.376;VQSLOD=6.80;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,31:31:72:962,72,0 1 16534002 rs221056 C G 864.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.672;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=13.216;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=-0.128;SB=-2.990e+02;SOR=0.071;VQSLOD=5.16;culprit=FS GT:AD:DP:GQ:PL 0/1:33,33:66:99:893,0,1054 1 16534255 rs221057 C G 980.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.824;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=-0.084;SB=-2.680e+02;SOR=0.816;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 0/1:47,35:82:99:1009,0,1347 1 16534646 rs221058 C G 248.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.29;ReadPosRankSum=1.653;SB=-1.040e+02;SOR=0.793;VQSLOD=9.41;culprit=QD GT:AD:DP:GQ:PL 0/1:21,9:30:99:277,0,596 1 16534730 rs221059 G A 208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.49;ReadPosRankSum=0.167;SB=-9.400e+01;SOR=0.859;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:13,9:22:99:237,0,362 1 16543175 rs221024 A C 1616.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-5.320e+02;SOR=2.259;VQSLOD=5.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1645,129,0 1 16558838 rs6700888 C A 399.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.928;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.386;HaplotypeScore=2.6841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=-0.522;SB=-1.640e+02;SOR=0.323;VQSLOD=9.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,20:41:99:428,0,563 1 16562968 rs6603850 C A 155.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.885;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.65;ReadPosRankSum=-0.281;SB=-1.765e+00;SOR=0.859;VQSLOD=9.70;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:184,0,399 1 16621183 rs1007150 C T 513.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.105;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.01;ReadPosRankSum=1.424;SB=-1.780e+02;SOR=0.748;VQSLOD=9.21;culprit=FS GT:AD:DP:GQ:PL 0/1:36,21:57:99:542,0,942 1 16641899 rs2273311 C T 833.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.635;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=-0.048;SB=-3.580e+02;SOR=0.779;VQSLOD=8.22;culprit=FS GT:AD:DP:GQ:PL 0/1:45,31:76:99:862,0,1220 1 16730582 rs17419150 C G 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.774;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.51;ReadPosRankSum=0.312;SB=-1.000e+02;SOR=0.569;VQSLOD=9.08;culprit=QD GT:AD:DP:GQ:PL 0/1:16,9:25:99:241,0,405 1 16731510 rs525409 C G 1724.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.255;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=2.365;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=0.738;SB=-9.080e+02;SOR=0.945;VQSLOD=7.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,67:121:99:1753,0,1250 1 16731646 rs3106498 T C 2026.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-6.640e+02;SOR=2.070;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2055,156,0 1 16731647 rs526481 G C 771.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.444;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.378;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.894;SB=-2.690e+02;SOR=0.415;VQSLOD=9.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,27:66:99:800,0,1105 1 16731653 rs526489 C T 669.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.228;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.113;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=0.407;SB=-2.570e+02;SOR=0.450;VQSLOD=9.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,26:62:99:698,0,1023 1 16731661 rs526513 T C 659.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.669;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=6.495;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=0.065;SB=-2.800e+02;SOR=0.201;VQSLOD=8.71;culprit=FS GT:AD:DP:GQ:PL 0/1:33,24:57:99:688,0,899 1 16736546 rs10907226 C T 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.817;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.471;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=2.059;SB=-1.920e+02;SOR=0.446;VQSLOD=8.35;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:12,14:26:99:375,0,311 1 16767180 . A G 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.257;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.304;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.15;ReadPosRankSum=0.178;SB=-1.080e+02;SOR=0.223;VQSLOD=8.53;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,10:18:99:247,0,236 1 16776753 . G T 273.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.676;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=42.3042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.21;ReadPosRankSum=0.356;SB=-4.176e+01;SOR=0.269;VQSLOD=8.25;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:302,0,262 1 16808971 rs2005457 G C 94.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=5.441;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=-0.405;SB=-2.501e+01;SOR=1.472;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:123,0,183 1 16817131 rs157247 T C 257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8888;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=-0.858;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=0.141;SB=-9.600e+01;SOR=0.446;VQSLOD=3.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,11:21:99:286,0,271 1 16817310 rs156854 T C 535.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=-0.859;SB=-3.910e+02;SOR=0.481;VQSLOD=8.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,23:31:99:564,0,212 1 16817677 rs157248 T C 166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-1.531;SB=-1.300e+02;SOR=0.892;VQSLOD=8.44;culprit=FS GT:AD:DP:GQ:PL 0/1:4,9:13:99:195,0,101 1 16862282 rs11260784 G A 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.055;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9477;MLEAC=1;MLEAF=0.500;MQ=46.20;MQ0=5;MQRankSum=1.123;QD=2.26;ReadPosRankSum=0.359;SB=-2.004e+01;SOR=0.279;VQSLOD=0.360;culprit=QD GT:AD:DP:GQ:PL 0/1:83,14:97:99:247,0,2495 1 16863173 . T C 80.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.481;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=53.22;MQ0=1;MQRankSum=-5.329;QD=2.02;ReadPosRankSum=-0.226;SB=-9.732e-01;SOR=0.593;VQSLOD=0.718;culprit=QD GT:AD:DP:GQ:PL 0/1:31,9:41:99:109,0,1011 1 16890283 rs156893 G T 753.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=25.91;SB=0.00;SOR=6.184;VQSLOD=5.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:782,63,0 1 16890787 rs111418886 ATAGATCCAT A 1834.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.06;MQ0=0;MQRankSum=-4.003;QD=21.09;RPA=2,1;RU=TAGATCCAT;ReadPosRankSum=1.620;SB=0.00;SOR=1.071;STR;VQSLOD=1.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,17:48:99:1872,0,1218 1 16890814 rs56139324 TA T 73.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.575;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.41;MQ0=0;MQRankSum=-3.777;QD=3.35;RPA=12,11;RU=A;ReadPosRankSum=2.633;SB=0.00;SOR=0.307;STR;VQSLOD=0.751;culprit=QD GT:AD:DP:GQ:PL 0/1:14,8:24:99:111,0,275 1 16891243 rs61771012 C G 719.82 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.860;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=4;MQRankSum=-0.956;QD=20.57;ReadPosRankSum=-1.510;SB=-4.040e+02;SOR=0.428;VQSLOD=2.12;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,34:35:19:748,19,0 1 16892561 rs649559 C T 1277.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=31.17;SB=-6.520e+02;SOR=1.075;VQSLOD=5.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1306,99,0 1 16893441 . G A 500.18 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.562;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-0.955;QD=29.42;ReadPosRankSum=-0.102;SB=-8.197e+01;SOR=1.981;VQSLOD=1.71;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,16:17:10:528,10,0 1 16901407 . G C 128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.99;MQ0=1;MQRankSum=-2.881;QD=11.71;ReadPosRankSum=0.497;SB=0.00;SOR=0.693;VQSLOD=1.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,6:11:99:157,0,178 1 16903150 rs61772340 T C 1072.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.77;SB=0.00;SOR=6.666;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:81:1101,81,0 1 16903663 rs684193 C T 348.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.931;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.11;MQ0=4;MQRankSum=-2.147;QD=11.63;ReadPosRankSum=-1.540;SB=-1.765e+00;SOR=1.730;VQSLOD=1.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,17:30:99:377,0,391 1 16903674 rs613213 C T 434.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.952;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.84;MQ0=4;MQRankSum=-2.474;QD=12.79;ReadPosRankSum=-1.183;SB=-1.765e+00;SOR=1.714;VQSLOD=1.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,19:34:99:463,0,445 1 16907110 rs77700260 T C 1956.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.384;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.91;MQ0=0;MQRankSum=-2.671;QD=22.75;ReadPosRankSum=-0.950;SB=-1.300e+02;SOR=0.570;VQSLOD=1.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,60:86:99:1985,0,730 1 16908914 rs643471 G A 101.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.962;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=47.70;MQ0=0;MQRankSum=-0.637;QD=9.25;ReadPosRankSum=0.880;SB=-1.765e+00;SOR=1.609;VQSLOD=1.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,5:11:99:130,0,160 1 16908930 . T C 39.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=48.91;MQ0=0;MQRankSum=-0.718;QD=3.31;ReadPosRankSum=1.543;SB=-1.765e+00;SOR=0.582;VQSLOD=1.74;culprit=QD GT:AD:DP:GQ:PL 0/1:9,3:12:68:68,0,270 1 16916358 rs3981774 G C 1063.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.765;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6588;MLEAC=1;MLEAF=0.500;MQ=44.03;MQ0=9;MQRankSum=-5.366;QD=18.03;ReadPosRankSum=-1.361;SB=-2.770e+02;SOR=0.904;VQSLOD=0.216;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,40:59:99:1092,0,335 1 16916702 rs4112521 T C 365.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.665;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=56.95;MQ0=0;MQRankSum=-1.394;QD=20.32;ReadPosRankSum=0.181;SB=0.00;SOR=1.179;VQSLOD=2.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,11:18:99:394,0,224 1 16918611 rs4141869 A C 226.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.311;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.07;MQ0=0;MQRankSum=-1.315;QD=9.86;ReadPosRankSum=-0.129;SB=-3.500e+01;SOR=0.250;VQSLOD=2.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,8:23:99:255,0,505 1 16918734 rs3928093 G C 32.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.44;MQ0=0;MQRankSum=-0.114;QD=2.98;ReadPosRankSum=-1.184;SB=-3.000e+01;SOR=0.346;VQSLOD=1.85;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:61:61,0,224 1 16918888 . C G 72.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.541;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.35;MQ0=0;MQRankSum=-2.484;QD=6.62;ReadPosRankSum=0.175;SB=-1.807e+01;SOR=0.527;VQSLOD=2.06;culprit=QD GT:AD:DP:GQ:PL 0/1:6,5:11:99:101,0,167 1 16931355 . T A 296.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.144;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-1.473;SB=-1.720e+02;SOR=0.906;VQSLOD=3.91;culprit=QD GT:AD:DP:GQ:PL 0/1:37,16:53:99:325,0,834 1 16948473 rs446948 C T 507.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.816;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.87;ReadPosRankSum=-0.370;SB=-2.080e+02;SOR=0.551;VQSLOD=8.64;culprit=FS GT:AD:DP:GQ:PL 0/1:12,20:32:99:536,0,363 1 16948474 rs2781579 C G 641.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.670;HaplotypeScore=3.6631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.45;ReadPosRankSum=0.147;SB=-2.500e+02;SOR=1.255;VQSLOD=4.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,25:33:99:670,0,207 1 16950346 rs9663015 A C 275.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.934;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.987;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.89;ReadPosRankSum=0.607;SB=-1.090e+02;SOR=1.292;VQSLOD=4.67;culprit=QD GT:AD:DP:GQ:PL 0/1:27,13:40:99:304,0,678 1 16952481 rs915311 A G 263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.320;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.88;ReadPosRankSum=0.372;SB=-1.140e+02;SOR=1.100;VQSLOD=4.74;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:19:99:292,0,206 1 16952510 rs1765551 G A 143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.147;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.46;ReadPosRankSum=-0.244;SB=-6.200e+01;SOR=1.112;VQSLOD=7.91;culprit=QD GT:AD:DP:GQ:PL 0/1:10,7:17:99:172,0,284 1 16952622 rs2005302 T G 61.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.15;ReadPosRankSum=0.611;SB=-2.203e+01;SOR=1.080;VQSLOD=7.36;culprit=QD GT:AD:DP:GQ:PL 0/1:9,3:12:90:90,0,254 1 16953121 rs1762947 C T 497.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.983;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=10.081;HaplotypeScore=2.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.08;ReadPosRankSum=-2.059;SB=-2.412e+02;SOR=0.052;VQSLOD=3.46;culprit=FS GT:AD:DP:GQ:PL 0/1:14,19:33:99:526,0,446 1 16953152 . G T 165.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.527;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.86;ReadPosRankSum=-1.545;SB=-1.417e+01;SOR=0.796;VQSLOD=6.93;culprit=QD GT:AD:DP:GQ:PL 0/1:35,8:43:99:194,0,1165 1 16953881 . C G 185.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.441;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.4175;MLEAC=1;MLEAF=0.500;MQ=57.79;MQ0=0;MQRankSum=-0.815;QD=2.27;ReadPosRankSum=-0.105;SB=-6.400e+01;SOR=0.527;VQSLOD=0.463;culprit=QD GT:AD:DP:GQ:PL 0/1:70,12:82:99:214,0,1915 1 16955128 rs1762949 A G 71.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.598;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-1.536;SB=-7.400e+01;SOR=0.616;VQSLOD=7.16;culprit=QD GT:AD:DP:GQ:PL 0/1:23,6:29:99:100,0,672 1 16955256 rs199693868 C T 75.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.020;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-0.410;SB=-5.200e+01;SOR=0.582;VQSLOD=6.88;culprit=QD GT:AD:DP:GQ:PL 0/1:18,5:23:99:104,0,556 1 16955289 . A G 53.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-0.779;SB=-1.905e+01;SOR=0.976;VQSLOD=7.21;culprit=QD GT:AD:DP:GQ:PL 0/1:11,3:14:82:82,0,320 1 16959602 rs1807293 C T 67.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.65;ReadPosRankSum=-0.984;SB=-2.302e+01;SOR=1.022;VQSLOD=7.48;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:96:96,0,220 1 16969120 rs4661879 A G 154.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.953;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.34;MQ0=0;MQRankSum=-1.745;QD=6.45;ReadPosRankSum=-0.572;SB=0.00;SOR=0.180;VQSLOD=2.12;culprit=QD GT:AD:DP:GQ:PL 0/1:17,7:24:99:183,0,492 1 16969145 rs11580567 T C 78.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.99;MQ0=0;MQRankSum=1.640;QD=2.32;ReadPosRankSum=0.407;SB=0.00;SOR=0.057;VQSLOD=1.47;culprit=QD GT:AD:DP:GQ:PL 0/1:28,6:34:99:107,0,865 1 16969715 rs9329444 A G 486.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.981;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.17;ReadPosRankSum=-0.479;SB=-9.732e-01;SOR=1.949;VQSLOD=4.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,17:40:99:515,0,745 1 16971862 rs10796422 A G 574.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.228;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.96;ReadPosRankSum=0.397;SB=0.00;SOR=0.818;VQSLOD=8.53;culprit=FS GT:AD:DP:GQ:PL 0/1:15,17:32:99:603,0,500 1 16971866 rs2224812 G T 912.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.773;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.85;ReadPosRankSum=-1.192;SB=0.00;SOR=3.258;VQSLOD=3.42;culprit=FS GT:AD:DP:GQ:PL 0/1:5,29:34:99:941,0,100 1 16972920 . C T 1792.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.708;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.506;HaplotypeScore=6.9933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.20;ReadPosRankSum=-1.018;SB=-1.044e+03;SOR=0.580;VQSLOD=3.10;culprit=DP GT:AD:DP:GQ:PL 0/1:171,78:250:99:1821,0,4673 1 16972940 rs1970921 G A 765.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.142;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=2.108;HaplotypeScore=4.5304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.06;ReadPosRankSum=0.398;SB=-3.280e+02;SOR=0.929;VQSLOD=0.420;culprit=QD GT:AD:DP:GQ:PL 0/1:207,43:250:99:794,0,5666 1 17013916 rs9662672 G A 155.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.524;HaplotypeScore=15.5306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.58;ReadPosRankSum=-0.508;SB=-1.180e+02;SOR=0.404;VQSLOD=6.65;culprit=QD GT:AD:DP:GQ:PL 0/1:25,9:34:99:184,0,623 1 17013916 rs59725107 GT G 467.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;RPA=2,1;RU=T;ReadPosRankSum=-0.508;SB=-1.750e+02;SOR=0.846;STR;VQSLOD=10.05;culprit=FS GT:AD:DP:GQ:PL 0/1:20,14:34:99:505,0,763 1 17017675 rs2743471 C A 2067.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.823;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=1.510;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.54;ReadPosRankSum=0.595;SB=-1.152e+03;SOR=0.902;VQSLOD=5.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,81:125:99:2096,0,1111 1 17017717 rs12561804 C T 698.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.588;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=4.131;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.41;ReadPosRankSum=0.406;SB=-4.020e+02;SOR=0.340;VQSLOD=6.58;culprit=QD GT:AD:DP:GQ:PL 0/1:74,35:109:99:727,0,2094 1 17017734 rs12561805 C T 586.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.151;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=2.104;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.90;ReadPosRankSum=0.760;SB=-2.660e+02;SOR=0.447;VQSLOD=7.30;culprit=QD GT:AD:DP:GQ:PL 0/1:58,27:85:99:615,0,1561 1 17022952 rs557690 C A 1002.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.39;SB=-1.791e+02;SOR=2.833;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:81:1031,81,0 1 17023126 rs2610633 C G 1197.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.074;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=1.417;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.94;ReadPosRankSum=-0.239;SB=-7.480e+02;SOR=0.566;VQSLOD=8.00;culprit=QD GT:AD:DP:GQ:PL 0/1:86,48:134:99:1226,0,2376 1 17023511 . C A 3917.77 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.0738;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.59;SB=-1.086e+03;SOR=2.341;VQSLOD=5.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,124:124:99:3946,292,0 1 17023569 rs563960 T C 1787.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9466;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.76;SB=-4.176e+01;SOR=6.479;VQSLOD=1.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1816,150,0 1 17026004 rs9661305 C G 264.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=1.675;SB=-1.420e+02;SOR=0.495;VQSLOD=9.16;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:293,0,134 1 17029513 . C G 751.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;DP=147;Dels=0.00;ExcessHet=3.0103;FS=1.493;HaplotypeScore=4.4251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-0.507;SB=-5.560e+02;SOR=0.537;VQSLOD=4.89;culprit=QD GT:AD:DP:GQ:PL 0/1:108,39:147:99:780,0,2781 1 17029664 rs580387 T C 133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.724;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=59.61;MQ0=0;MQRankSum=-1.828;QD=4.78;ReadPosRankSum=-0.392;SB=0.00;SOR=0.089;VQSLOD=1.96;culprit=QD GT:AD:DP:GQ:PL 0/1:22,6:28:99:162,0,785 1 17029714 rs2773181 G C 150.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=0.748;QD=13.71;ReadPosRankSum=-2.484;SB=0.00;SOR=0.859;VQSLOD=1.49;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,6:11:99:179,0,166 1 17030325 . A G 301.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.701;DP=38;Dels=0.00;ExcessHet=3.0103;FS=6.104;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-0.530;SB=-1.790e+02;SOR=0.146;VQSLOD=7.42;culprit=QD GT:AD:DP:GQ:PL 0/1:24,14:38:99:330,0,683 1 17030504 rs601031 T A 581.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.677;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.12;ReadPosRankSum=0.516;SB=-3.420e+02;SOR=0.730;VQSLOD=6.00;culprit=QD GT:AD:DP:GQ:PL 0/1:68,27:95:99:610,0,1845 1 17030515 rs201665864 G A 568.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=1.800;HaplotypeScore=2.7463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.58;ReadPosRankSum=0.668;SB=-2.980e+02;SOR=0.932;VQSLOD=4.07;culprit=QD GT:AD:DP:GQ:PL 0/1:74,28:102:99:597,0,1950 1 17030518 rs200139772 C T 596.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.186;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=1.821;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.79;ReadPosRankSum=0.723;SB=-3.220e+02;SOR=0.978;VQSLOD=4.15;culprit=QD GT:AD:DP:GQ:PL 0/1:75,28:103:99:625,0,2031 1 17030519 rs201039793 T G 628.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.131;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=1.813;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.05;ReadPosRankSum=0.748;SB=-3.290e+02;SOR=0.997;VQSLOD=4.25;culprit=QD GT:AD:DP:GQ:PL 0/1:76,28:104:99:657,0,2027 1 17030590 rs590170 G A 597.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.904;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=4.231;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.98;ReadPosRankSum=-0.027;SB=-3.580e+02;SOR=0.485;VQSLOD=5.84;culprit=QD GT:AD:DP:GQ:PL 0/1:71,29:100:99:626,0,1966 1 17030729 rs12029338 C T 298.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.288;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.062;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.30;ReadPosRankSum=3.082;SB=-6.900e+01;SOR=0.297;VQSLOD=7.11;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:18,11:29:99:327,0,522 1 17033758 rs1736691 A G 507.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.832;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.675;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.16;ReadPosRankSum=-0.708;SB=-1.190e+02;SOR=1.593;VQSLOD=4.88;culprit=FS GT:AD:DP:GQ:PL 0/1:29,21:50:99:536,0,821 1 17033854 rs2476568 C T 727.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.890;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.58;ReadPosRankSum=0.391;SB=-4.040e+02;SOR=0.858;VQSLOD=5.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,31:77:99:756,0,1205 1 17034041 rs2743505 T C 537.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.345;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.27;MQ0=0;MQRankSum=1.658;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=0.573;SB=-2.780e+02;SOR=0.627;VQSLOD=3.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,19:35:99:566,0,402 1 17044433 rs3856289 C T 63.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.80;ReadPosRankSum=1.834;SB=-9.732e-01;SOR=1.371;VQSLOD=5.83;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:92:92,0,255 1 17044457 rs1318341 G C 623.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.83;SB=-1.583e+02;SOR=2.419;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:48:652,48,0 1 17044511 rs2773185 T C 535.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.86;ReadPosRankSum=0.951;SB=-2.870e+02;SOR=0.582;VQSLOD=8.11;culprit=FS GT:AD:DP:GQ:PL 0/1:9,21:30:99:564,0,192 1 17044589 rs944147 G A 362.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.108;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.50;MQ0=0;MQRankSum=1.146;QD=9.07;ReadPosRankSum=0.853;SB=-1.890e+02;SOR=0.836;VQSLOD=1.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,15:40:99:391,0,726 1 17044695 rs2773186 A G 268.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.112;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.40;ReadPosRankSum=-0.448;SB=-1.360e+02;SOR=0.722;VQSLOD=8.01;culprit=QD GT:AD:DP:GQ:PL 0/1:20,12:32:99:297,0,526 1 17046549 rs1755332 G A 1501.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=3.307;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=1.445;SB=-7.890e+02;SOR=1.049;VQSLOD=6.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,63:122:99:1530,0,1496 1 17046613 rs3856294 C T 360.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.437;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.983;HaplotypeScore=2.8312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-0.602;SB=-1.330e+02;SOR=0.814;VQSLOD=2.95;culprit=QD GT:AD:DP:GQ:PL 0/1:77,21:100:99:389,0,2382 1 17083671 rs1057420 C G 905.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.421;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=43.23;MQ0=5;MQRankSum=-0.120;QD=8.79;ReadPosRankSum=0.043;SB=-2.450e+02;SOR=0.934;VQSLOD=0.630;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,45:103:99:934,0,1169 1 17085834 rs2005622 G T 2148.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=3;POSITIVE_TRAIN_SITE;QD=26.20;SB=-1.119e+03;SOR=1.136;VQSLOD=5.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2177,163,0 1 17087365 rs2446556 C G 8823.77 PASS AC=2;AF=1.00;AN=2;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9966;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=4;NEGATIVE_TRAIN_SITE;QD=24.33;SB=-4.549e+03;SOR=0.760;VQSLOD=0.473;culprit=DP GT:AD:DP:GQ:PL 1/1:0,250:250:99:8852,662,0 1 17088247 rs11576831 A G 353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.218;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.65;ReadPosRankSum=0.106;SB=-1.400e+02;SOR=0.793;VQSLOD=8.53;culprit=FS GT:AD:DP:GQ:PL 0/1:4,14:18:80:382,0,80 1 17183209 . C T 89.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.639;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.57;MQ0=2;MQRankSum=-3.977;QD=3.21;ReadPosRankSum=-2.949;SB=-2.203e+01;SOR=1.085;VQSLOD=0.341;culprit=QD GT:AD:DP:GQ:PL 0/1:21,7:28:99:118,0,596 1 17183210 . A G 93.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.983;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.73;MQ0=2;MQRankSum=-4.071;QD=3.23;ReadPosRankSum=-2.574;SB=-2.302e+01;SOR=1.002;VQSLOD=0.628;culprit=QD GT:AD:DP:GQ:PL 0/1:22,7:29:99:122,0,607 1 17185437 rs61768089 C T 86.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.321;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.19;MQ0=0;MQRankSum=-1.829;QD=6.20;ReadPosRankSum=0.141;SB=0.00;SOR=0.188;VQSLOD=1.62;culprit=QD GT:AD:DP:GQ:PL 0/1:10,4:14:99:115,0,350 1 17197798 rs112783082 A G 469.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.992;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.9848;MLEAC=1;MLEAF=0.500;MQ=52.40;MQ0=0;MQRankSum=-5.410;QD=8.86;ReadPosRankSum=0.743;SB=-1.765e+00;SOR=0.779;VQSLOD=0.574;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,18:53:99:498,0,1195 1 17197801 rs1755367 C G 206.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.9853;MLEAC=1;MLEAF=0.500;MQ=52.24;MQ0=0;MQRankSum=-0.497;QD=3.98;ReadPosRankSum=-0.151;SB=-1.765e+00;SOR=0.242;VQSLOD=1.66;culprit=QD GT:AD:DP:GQ:PL 0/1:42,10:52:99:235,0,1467 1 17197817 rs143935929 C A 257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.526;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.10;MQ0=0;MQRankSum=-3.627;QD=8.59;ReadPosRankSum=2.400;SB=0.00;SOR=0.242;VQSLOD=0.797;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,10:30:99:286,0,677 1 17197818 rs201954177 C G 255.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.640;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.10;MQ0=0;MQRankSum=-3.627;QD=8.53;ReadPosRankSum=2.399;SB=0.00;SOR=0.242;VQSLOD=0.890;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,10:30:99:284,0,615 1 17197859 . G A 127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.95;MQ0=0;MQRankSum=-2.065;QD=11.62;ReadPosRankSum=0.000;SB=0.00;SOR=0.859;VQSLOD=1.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,6:11:99:156,0,168 1 17248500 rs6683035 A G 88.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.22;ReadPosRankSum=0.422;SB=-2.901e+01;SOR=0.693;VQSLOD=9.03;culprit=QD GT:AD:DP:GQ:PL 0/1:12,5:17:99:117,0,335 1 17248532 rs6586566 A G 633.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-2.750e+02;SOR=1.508;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:48:662,48,0 1 17249395 rs6586567 A G 318.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.036;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.96;ReadPosRankSum=1.440;SB=-9.000e+01;SOR=0.350;VQSLOD=7.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,13:32:99:347,0,507 1 17250762 . G C 152.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.941;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.88;ReadPosRankSum=1.417;SB=-8.700e+01;SOR=0.223;VQSLOD=6.83;culprit=QD GT:AD:DP:GQ:PL 0/1:19,7:26:99:181,0,509 1 17250836 . A G 229.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.799;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.289;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-0.827;SB=-1.120e+02;SOR=0.929;VQSLOD=3.81;culprit=QD GT:AD:DP:GQ:PL 0/1:32,13:45:99:258,0,956 1 17251055 . C T 531.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.60;ReadPosRankSum=-0.907;SB=-3.090e+02;SOR=0.733;VQSLOD=5.88;culprit=QD GT:AD:DP:GQ:PL 0/1:47,23:70:99:560,0,1319 1 17262942 rs7529769 G T 97.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.15;ReadPosRankSum=0.165;SB=-1.765e+00;SOR=0.941;VQSLOD=6.82;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:99:126,0,256 1 17262944 rs7521985 A G 102.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.56;ReadPosRankSum=0.165;SB=-1.765e+00;SOR=0.941;VQSLOD=8.18;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:99:131,0,236 1 17262953 rs7521989 A G 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.024;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-0.192;SB=-1.765e+00;SOR=1.022;VQSLOD=8.19;culprit=FS GT:AD:DP:GQ:PL 0/1:9,5:14:99:163,0,268 1 17264920 rs4463721 C T 99.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.31;ReadPosRankSum=-0.547;SB=-2.901e+01;SOR=0.412;VQSLOD=9.54;culprit=QD GT:AD:DP:GQ:PL 0/1:7,5:12:99:128,0,215 1 17264939 . T C 108.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.80;ReadPosRankSum=-0.257;SB=-6.100e+01;SOR=0.446;VQSLOD=8.23;culprit=QD GT:AD:DP:GQ:PL 0/1:9,7:16:99:137,0,246 1 17265171 . A G 625.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.771;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.35;ReadPosRankSum=-1.062;SB=-3.460e+02;SOR=0.566;VQSLOD=7.76;culprit=FS GT:AD:DP:GQ:PL 0/1:7,21:28:99:654,0,135 1 17265327 rs4269813 A G 1337.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.558;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.880;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.12;ReadPosRankSum=1.614;SB=-6.800e+02;SOR=0.525;VQSLOD=7.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,51:83:99:1366,0,735 1 17265366 rs4269812 C G 1048.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.80;ReadPosRankSum=-0.235;SB=-5.500e+02;SOR=0.624;VQSLOD=8.76;culprit=FS GT:AD:DP:GQ:PL 0/1:67,40:107:99:1077,0,1853 1 17265560 rs9435793 C T 324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.727;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=-2.639;SB=-6.900e+01;SOR=0.446;VQSLOD=8.87;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:17,13:30:99:353,0,491 1 17267302 rs6586577 A G 830.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.604;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.503;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.78;ReadPosRankSum=-0.046;SB=-4.050e+02;SOR=1.269;VQSLOD=4.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,33:42:99:859,0,166 1 17267496 rs6586578 C T 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.101;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=6.864;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-1.432;SB=-8.097e+01;SOR=0.053;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:203,0,285 1 17270498 rs9435717 T G 276.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.375;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQ0=0;MQRankSum=-1.757;QD=7.69;ReadPosRankSum=-0.471;SB=-2.030e+02;SOR=0.693;VQSLOD=2.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,14:36:99:305,0,557 1 17270845 rs71764775 C CG 190.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.429;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=0.307;SB=-8.100e+01;SOR=0.527;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:13,6:19:99:228,0,559 1 17273371 rs41267493 C T 88.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=4.434;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.03;ReadPosRankSum=-0.039;SB=-7.790e+00;SOR=1.802;VQSLOD=4.97;culprit=QD GT:AD:DP:GQ:PL 0/1:17,5:22:99:117,0,441 1 17273396 rs7537468 A G 57.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.183;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.869;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.85;ReadPosRankSum=-0.650;SB=-2.657e-01;SOR=1.781;VQSLOD=4.80;culprit=QD GT:AD:DP:GQ:PL 0/1:12,3:15:86:86,0,325 1 17275429 rs61769577 G T 152.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.75;MQ0=0;MQRankSum=-3.546;POSITIVE_TRAIN_SITE;QD=5.27;ReadPosRankSum=1.839;SB=-1.150e+02;SOR=0.525;VQSLOD=2.55;culprit=QD GT:AD:DP:GQ:PL 0/1:20,9:29:99:181,0,520 1 17282425 rs2143808 G A 139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.74;ReadPosRankSum=-0.103;SB=-1.040e+02;SOR=0.412;VQSLOD=10.10;culprit=QD GT:AD:DP:GQ:PL 0/1:9,7:16:99:168,0,240 1 17282573 rs2273114 G A 287.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=-0.216;SB=-1.350e+02;SOR=1.218;VQSLOD=7.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,12:23:99:316,0,314 1 17285022 rs12097969 A G 111.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.380;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=6.154;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=-0.702;SB=-5.800e+01;SOR=0.636;VQSLOD=5.48;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:140,0,173 1 17285298 rs41300134 C T 210.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.374;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.077;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=0.847;SB=-1.330e+02;SOR=0.235;VQSLOD=9.59;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,9:17:99:239,0,209 1 17295679 rs4920574 T C 1615.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=-9.480e+02;SOR=1.009;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1644,117,0 1 17301672 rs761423 T C 635.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.862;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.176;HaplotypeScore=3.7320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=-2.383;SB=-3.080e+02;SOR=1.077;VQSLOD=7.08;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:36,26:63:99:664,0,999 1 17301780 rs761422 A G 466.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=0.846;SB=-2.860e+02;SOR=0.727;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:29,21:50:99:495,0,810 1 17303589 rs2235932 C T 1218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.658;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=4.127;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=1.100;SB=-6.270e+02;SOR=1.025;VQSLOD=6.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,46:86:99:1247,0,1046 1 17303792 rs4920588 C T 271.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.653;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=0.537;SB=-3.200e+01;SOR=1.112;VQSLOD=9.34;culprit=FS GT:AD:DP:GQ:PL 0/1:7,10:17:99:300,0,201 1 17312743 rs3170740 C T 214.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=0.723;SB=-1.390e+02;SOR=0.653;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:243,0,203 1 17313157 rs2076605 G A 333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.013;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=0.024;SB=-1.765e+00;SOR=1.387;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 0/1:15,12:27:99:362,0,495 1 17313343 rs9435659 G A 582.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.156;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.166;HaplotypeScore=3.2971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=0.170;SB=-2.910e+02;SOR=0.454;VQSLOD=9.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,26:51:99:611,0,609 1 17313654 rs761421 C T 906.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.025;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.951;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=0.006;SB=-5.310e+02;SOR=0.436;VQSLOD=9.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,41:68:99:935,0,730 1 17314942 rs9435662 G A 2624.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.768;DB;DP=194;Dels=0.00;ExcessHet=3.0103;FS=1.191;HaplotypeScore=7.0173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-0.383;SB=-1.216e+03;SOR=0.584;VQSLOD=7.14;culprit=DP GT:AD:DP:GQ:PL 0/1:87,106:194:99:2653,0,2427 1 17319011 rs2076603 G A 972.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=-0.408;SB=-4.960e+02;SOR=0.720;VQSLOD=8.52;culprit=FS GT:AD:DP:GQ:PL 0/1:46,37:83:99:1001,0,1310 1 17319287 rs4920608 C T 506.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.629;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.238;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=-0.517;SB=-1.980e+02;SOR=0.976;VQSLOD=7.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,21:44:99:535,0,546 1 17331676 rs3738814 A G 1733.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=-6.790e+02;SOR=1.651;VQSLOD=7.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1762,129,0 1 17359676 rs1022580 C A 3032.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-1.111e+03;SOR=1.839;VQSLOD=5.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:3061,223,0 1 17380497 rs2746462 G T 692.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=-2.530e+02;SOR=1.708;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:54:721,54,0 1 17396877 rs376107309 G A 254.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.522;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.20;ReadPosRankSum=-0.252;SB=-1.765e+00;SOR=2.303;VQSLOD=4.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,8:14:99:283,0,164 1 17402347 rs2647205 C T 2904.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.64;SB=-1.232e+03;SOR=1.493;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:2933,223,0 1 17402420 . A G 1448.77 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.19;SB=-3.550e+02;SOR=2.461;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1477,108,0 1 17406015 rs2057093 C T 496.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.22;SB=-7.197e+01;SOR=3.383;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:525,42,0 1 17409017 rs2076617 G A 974.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.427;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.35;ReadPosRankSum=1.031;SB=-4.760e+02;SOR=0.551;VQSLOD=8.04;culprit=FS GT:AD:DP:GQ:PL 1/1:1,36:37:42:1003,42,0 1 17409241 rs2235925 G A 1043.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.135;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.85;ReadPosRankSum=0.413;SB=-5.500e+02;SOR=0.627;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 1/1:1,41:42:43:1072,43,0 1 17413121 rs2076615 A C 3825.77 PASS AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-1.973e+03;SOR=1.151;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,124:124:99:3854,283,0 1 17418883 rs2647184 A G 2740.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.26;SB=-5.290e+02;SOR=3.042;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2769,208,0 1 17419024 rs11203297 G A 6698.77 PASS AC=2;AF=1.00;AN=2;DB;DP=240;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.91;SB=-3.904e+03;SOR=0.853;VQSLOD=3.73;culprit=DP GT:AD:DP:GQ:PL 1/1:0,240:240:99:6727,494,0 1 17550225 rs3003481 T C 2376.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-1.344e+03;SOR=0.876;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2405,175,0 1 17550303 rs2293913 T C 681.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.188;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.235;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=0.184;SB=-2.520e+02;SOR=1.075;VQSLOD=7.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,27:64:99:710,0,911 1 17550314 rs2293914 G A 763.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.790;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.059;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.832;SB=-4.030e+02;SOR=0.457;VQSLOD=10.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,33:60:99:792,0,760 1 17551034 rs2293915 A T 426.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.153;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.46;ReadPosRankSum=-0.088;SB=0.00;SOR=1.609;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:6,13:19:99:455,0,183 1 17552875 rs2977290 A G 528.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.44;SB=-3.710e+02;SOR=0.892;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:39:557,39,0 1 17557039 rs10888010 T C 709.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.618;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=5.229;HaplotypeScore=2.7648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=0.791;SB=-4.400e+01;SOR=1.655;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 0/1:42,25:67:99:738,0,1261 1 17557133 rs3003406 A C 1743.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.391;DB;DP=174;Dels=0.00;ExcessHet=3.0103;FS=0.569;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=0.466;SB=-8.750e+02;SOR=0.779;VQSLOD=7.83;culprit=DP GT:AD:DP:GQ:PL 0/1:100,74:174:99:1772,0,2537 1 17557178 rs2977235 C T 1913.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.945;DB;DP=190;Dels=0.00;ExcessHet=3.0103;FS=0.534;HaplotypeScore=3.5037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.07;ReadPosRankSum=-1.214;SB=-1.179e+03;SOR=0.737;VQSLOD=7.00;culprit=DP GT:AD:DP:GQ:PL 0/1:109,81:190:99:1942,0,2649 1 17557310 rs3003407 G A 566.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.437;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.034;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=0.431;SB=-2.004e+01;SOR=1.270;VQSLOD=7.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,20:47:99:595,0,905 1 17559196 rs4268393 T C 328.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.739;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.858;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.55;ReadPosRankSum=-0.435;SB=-3.200e+01;SOR=2.303;VQSLOD=6.22;culprit=QD GT:AD:DP:GQ:PL 0/1:6,10:16:99:357,0,150 1 17563967 rs2977306 T C 626.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.663;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=0.371;SB=-2.010e+02;SOR=0.722;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 0/1:26,23:49:99:655,0,542 1 17564990 rs2977310 T C 124.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.32;ReadPosRankSum=1.046;SB=-1.765e+00;SOR=0.892;VQSLOD=9.74;culprit=QD GT:AD:DP:GQ:PL 0/1:10,5:15:99:153,0,295 1 17566041 rs41265087 C A 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.259;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=-0.692;SB=-1.765e+00;SOR=1.781;VQSLOD=8.38;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:247,0,283 1 17570286 rs2977222 T C 570.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.856;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.342;HaplotypeScore=13.3730;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=1.107;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=0.029;SB=-2.010e+02;SOR=1.112;VQSLOD=0.690;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,20:38:99:599,0,430 1 17570466 rs2293921 T C 815.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.624;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=5.746;HaplotypeScore=1.4972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=0.315;SB=-4.400e+02;SOR=0.969;VQSLOD=5.02;culprit=FS GT:AD:DP:GQ:PL 0/1:49,34:83:99:844,0,1231 1 17570767 rs41300110 C G 2015.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=1.236;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.049;SB=-1.162e+03;SOR=0.558;VQSLOD=7.22;culprit=DP GT:AD:DP:GQ:PL 0/1:81,81:163:99:2044,0,2190 1 17592121 rs72646775 T C 1834.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=1.407;HaplotypeScore=4.4419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-0.392;SB=-9.170e+02;SOR=0.866;VQSLOD=7.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,68:133:99:1863,0,1604 1 17593144 rs2272628 C G 578.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=-1.504;SB=-1.980e+02;SOR=0.756;VQSLOD=8.50;culprit=FS GT:AD:DP:GQ:PL 0/1:19,23:42:99:607,0,527 1 17594263 rs4262593 T C 995.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.352;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=1.183;HaplotypeScore=1.9729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-1.147;SB=-1.420e+02;SOR=0.907;VQSLOD=7.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,35:75:99:1024,0,1242 1 17594592 rs4339902 G A 606.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.365;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=-0.146;SB=0.00;SOR=0.798;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:18,20:38:99:635,0,613 1 17594645 rs4262594 A G 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.804;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=1.539;SB=0.00;SOR=1.022;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:241,0,166 1 17597181 rs10888013 A G 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=1.021;SB=-3.500e+01;SOR=0.836;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:246,0,195 1 17597314 . T TC 1165.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;DP=73;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.42;RPA=6,7;RU=C;ReadPosRankSum=-1.214;SB=-3.180e+02;SOR=0.533;STR;VQSLOD=8.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,39:73:99:1203,0,942 1 17597721 rs4595409 A G 311.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.977;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=0.531;SB=-1.765e+00;SOR=1.942;VQSLOD=6.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,10:19:99:340,0,272 1 17600822 rs11203346 A G 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-0.433;SB=-3.001e+01;SOR=0.693;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:201,0,204 1 17600960 . T C 929.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.74;ReadPosRankSum=-0.171;SB=-3.920e+02;SOR=0.679;VQSLOD=7.59;culprit=FS GT:AD:DP:GQ:PL 0/1:38,35:73:99:958,0,1038 1 17601083 rs2293917 C T 1098.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=6.465;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=-0.032;SB=-5.370e+02;SOR=1.029;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 0/1:57,42:99:99:1127,0,1496 1 17601165 rs11585357 C T 611.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=1.314;SB=-2.300e+02;SOR=0.735;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 0/1:44,23:67:99:640,0,1182 1 17603472 rs72646785 G T 66.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=4.393;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.07;ReadPosRankSum=-0.542;SB=-3.377e+01;SOR=0.061;VQSLOD=8.57;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:95:95,0,248 1 17604426 . G A 1132.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.757;DP=94;Dels=0.00;ExcessHet=3.0103;FS=2.642;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.05;ReadPosRankSum=1.316;SB=-6.830e+02;SOR=0.810;VQSLOD=5.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,46:94:99:1161,0,1282 1 17607068 rs2272630 T C 412.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.800;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.38;ReadPosRankSum=-0.879;SB=-2.100e+02;SOR=0.289;VQSLOD=9.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,16:44:99:441,0,939 1 17607501 rs11584287 G C 244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=4.150;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=-0.211;SB=-1.765e+00;SOR=2.636;VQSLOD=5.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,8:13:99:273,0,153 1 17635036 rs2501798 G C 670.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.94;SB=-2.790e+02;SOR=1.508;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:51:699,51,0 1 17635072 rs2501799 A G 417.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=-2.221e+02;SOR=0.976;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:33:446,33,0 1 17657534 rs11203366 G A 426.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.101;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.975;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.57;ReadPosRankSum=1.305;SB=-1.390e+02;SOR=1.430;VQSLOD=5.60;culprit=QD GT:AD:DP:GQ:PL 0/1:47,18:65:99:455,0,1128 1 17657616 rs11203367 T C 658.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.277;HaplotypeScore=2.7490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=0.511;SB=-4.360e+02;SOR=0.380;VQSLOD=9.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,30:70:99:687,0,1078 1 17660499 rs874881 G C 683.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=1.943;HaplotypeScore=2.7059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.88;ReadPosRankSum=-0.306;SB=-3.400e+02;SOR=1.100;VQSLOD=6.81;culprit=QD GT:AD:DP:GQ:PL 0/1:46,31:77:99:712,0,1195 1 17660660 rs874882 G A 671.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.654;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.203;HaplotypeScore=3.4814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=1.625;SB=-4.090e+02;SOR=0.444;VQSLOD=9.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,28:59:99:700,0,734 1 17660697 rs1548323 T C 643.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.794;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=7.734;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=-0.223;SB=-2.890e+02;SOR=0.131;VQSLOD=7.83;culprit=FS GT:AD:DP:GQ:PL 0/1:21,23:44:99:672,0,585 1 17661128 rs1555658 A C 116.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.463;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.73;ReadPosRankSum=0.775;SB=-6.500e+01;SOR=1.144;VQSLOD=6.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,6:12:99:145,0,173 1 17661805 rs1635594 A G 486.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.572;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.176;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=0.500;SB=-1.700e+02;SOR=1.569;VQSLOD=6.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,17:34:99:515,0,382 1 17662541 rs1748034 A C 606.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=-0.461;SB=0.00;SOR=0.602;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 0/1:21,19:40:99:635,0,689 1 17662639 rs2240340 T C 1681.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=4.583;HaplotypeScore=2.7577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-0.017;SB=-6.560e+02;SOR=1.215;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 0/1:62,63:125:99:1710,0,1492 1 17662662 rs1748033 T C 1921.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=1.367;HaplotypeScore=1.3302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-0.921;SB=-9.980e+02;SOR=0.828;VQSLOD=8.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,73:136:99:1950,0,1595 1 17662751 rs1621005 C G 1629.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.242;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.715;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.045;SB=-9.070e+02;SOR=0.566;VQSLOD=8.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,67:120:99:1658,0,1398 1 17662804 rs1748032 C T 1047.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.250;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.694;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=0.224;SB=-2.020e+02;SOR=1.204;VQSLOD=7.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,37:70:99:1076,0,950 1 17662907 rs1748031 A T 442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.256;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=0.864;SB=-2.600e+02;SOR=0.799;VQSLOD=5.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,19:32:99:471,0,393 1 17664770 rs1635586 A G 419.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.156;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=1.570;SB=-3.401e+01;SOR=0.518;VQSLOD=10.02;culprit=FS GT:AD:DP:GQ:PL 0/1:17,14:31:99:448,0,506 1 17664813 rs1635585 T G 188.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=-0.712;SB=0.00;SOR=1.085;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:217,0,126 1 17666095 rs1635578 T C 591.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.885;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.129;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=1.432;SB=-9.732e-01;SOR=2.494;VQSLOD=5.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,19:38:99:620,0,525 1 17666508 rs11203368 C T 208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=2.565;SB=-3.976e+01;SOR=0.283;VQSLOD=9.09;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:6,8:14:99:237,0,198 1 17668270 rs1748021 A G 432.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.372;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.786;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=-1.645;SB=-1.470e+02;SOR=0.352;VQSLOD=9.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,16:29:99:461,0,356 1 17668563 rs35903413 G A 533.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.505;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=-0.297;SB=-2.630e+02;SOR=1.112;VQSLOD=7.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,22:46:99:562,0,642 1 17672642 rs41266003 C T 1107.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.021;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=2.121;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.959;SB=-2.370e+02;SOR=1.053;VQSLOD=7.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,42:90:99:1136,0,1320 1 17681277 rs6683201 T C 632.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.40;SB=0.00;SOR=5.670;VQSLOD=8.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:661,48,0 1 17683041 rs1635567 T C 4648.77 PASS AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.28;SB=-1.980e+03;SOR=1.497;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,144:144:99:4677,337,0 1 17683157 rs1635566 A G 1411.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-1.553e+02;SOR=3.967;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1440,108,0 1 17685174 rs2428735 T C 1796.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7260;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-6.470e+02;SOR=1.942;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:61:99:1825,132,0 1 17685466 rs34481461 C A 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.872;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.51;ReadPosRankSum=0.207;SB=-8.000e+01;SOR=0.976;VQSLOD=9.11;culprit=QD GT:AD:DP:GQ:PL 0/1:11,8:19:99:171,0,291 1 17698725 rs1204873 C T 863.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.519;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=6.759;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=1.358;SB=-5.270e+02;SOR=0.231;VQSLOD=8.15;culprit=FS GT:AD:DP:GQ:PL 0/1:35,36:71:99:892,0,966 1 17698891 rs6700319 C T 1047.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.518;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.809;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=0.677;SB=-5.190e+02;SOR=0.523;VQSLOD=9.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,45:93:99:1076,0,1340 1 17698961 rs1204872 T C 774.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.461;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=-0.591;SB=-1.590e+02;SOR=0.859;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 0/1:23,26:49:99:803,0,544 1 17699017 rs6656582 A G 271.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.934;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-0.497;SB=-6.500e+01;SOR=0.784;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:13,10:23:99:300,0,333 1 17699379 rs71672613 A AAC 277.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.52;RPA=2,3;RU=AC;ReadPosRankSum=-0.963;SB=0.00;SOR=0.818;STR;VQSLOD=7.94;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:315,0,259 1 17699385 . G A 345.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.536;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.21;ReadPosRankSum=-1.993;SB=0.00;SOR=1.179;VQSLOD=8.12;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,11:18:99:374,0,198 1 17699463 rs1204869 C T 1071.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.021;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=1.680;SB=-2.750e+02;SOR=0.754;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:27,37:64:99:1100,0,797 1 17699509 rs71720586 G GGTGA 3851.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.387;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.12;ReadPosRankSum=1.100;SB=-1.247e+03;SOR=0.692;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 0/1:56,59:115:99:3889,0,3463 1 17707601 rs6669650 T C 1352.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.278;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=3.321;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=1.246;SB=-8.820e+02;SOR=0.628;VQSLOD=7.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,57:120:99:1381,0,1502 1 17707739 rs1204898 T C 751.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.362;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=-0.517;SB=-2.980e+02;SOR=0.813;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:37,28:65:99:780,0,964 1 17707757 rs6664321 C T 440.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.949;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=-1.507;SB=-1.420e+02;SOR=0.818;VQSLOD=8.72;culprit=FS GT:AD:DP:GQ:PL 0/1:27,19:48:99:469,0,716 1 17707758 rs6703392 G C 495.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=-1.378;SB=-2.040e+02;SOR=0.657;VQSLOD=9.20;culprit=FS GT:AD:DP:GQ:PL 0/1:27,20:47:99:524,0,761 1 17707798 rs10788668 C T 146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.311;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.67;ReadPosRankSum=1.129;SB=-2.701e+01;SOR=0.446;VQSLOD=9.64;culprit=QD GT:AD:DP:GQ:PL 0/1:15,7:22:99:175,0,467 1 17714638 rs2762893 A G 140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.788;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.80;ReadPosRankSum=0.651;SB=-9.732e-01;SOR=1.863;VQSLOD=5.36;culprit=QD GT:AD:DP:GQ:PL 0/1:10,6:16:99:169,0,281 1 17714710 rs2762894 A C 401.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.133;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=-0.112;SB=-5.000e+01;SOR=1.292;VQSLOD=6.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,15:40:99:430,0,659 1 17714864 rs6696295 T C 1378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=1.767;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=0.907;SB=-7.190e+02;SOR=0.518;VQSLOD=9.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,49:88:99:1407,0,1136 1 17715081 rs2526842 C T 1070.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.627;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=7.184;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.752;SB=-4.620e+02;SOR=1.417;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 0/1:44,43:87:99:1099,0,1235 1 17715135 rs2526841 T C 754.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=6.876;HaplotypeScore=1.9156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=0.941;SB=-3.790e+02;SOR=0.751;VQSLOD=5.41;culprit=FS GT:AD:DP:GQ:PL 0/1:39,28:67:99:783,0,1272 1 17715475 rs2800688 T C 552.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.780;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=-0.113;SB=-5.900e+01;SOR=1.022;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:20,19:39:99:581,0,579 1 17718671 rs10709483 AG A 1655.73 PASS AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.94;RPA=3,2;RU=G;SB=-8.300e+02;SOR=0.793;STR;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:44:99:1693,120,0 1 17718750 rs12737852 C T 390.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.477;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=-0.050;SB=-1.330e+02;SOR=0.733;VQSLOD=9.95;culprit=FS GT:AD:DP:GQ:PL 0/1:19,16:35:99:419,0,475 1 17720439 rs6695849 T C 1668.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.298;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=0.589;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=0.521;SB=-8.160e+02;SOR=0.774;VQSLOD=8.08;culprit=DP GT:AD:DP:GQ:PL 0/1:99,66:165:99:1697,0,2619 1 17720615 rs10458537 A C 1527.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.469;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=1.468;HaplotypeScore=1.6229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=0.695;SB=-8.030e+02;SOR=0.531;VQSLOD=9.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,59:125:99:1556,0,1739 1 17720686 rs34075690 AG A 1273.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;DB;DP=91;ExcessHet=3.0103;FS=4.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;RPA=6,5;RU=G;ReadPosRankSum=1.895;SB=-4.810e+02;SOR=1.132;STR;VQSLOD=6.70;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:45,43:91:99:1311,0,1392 1 17721388 rs6691485 C T 256.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.163;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-0.281;SB=-1.765e+00;SOR=1.981;VQSLOD=6.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,9:17:99:285,0,273 1 17721695 rs35197313 GT G 260.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.160;DB;DP=52;ExcessHet=3.0103;FS=2.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.93;RPA=15,14;RU=T;ReadPosRankSum=-0.137;SB=-4.297e+01;SOR=0.250;STR;VQSLOD=8.37;culprit=QD GT:AD:DP:GQ:PL 0/1:27,17:52:99:298,0,403 1 17721707 rs12239645 T G 507.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.406;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.965;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.28;ReadPosRankSum=0.506;SB=-1.090e+02;SOR=0.231;VQSLOD=7.71;culprit=SOR GT:AD:DP:GQ:PL 0/1:26,19:45:99:536,0,836 1 17725011 rs1555663 T C 543.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.716;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.161;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=1.612;SB=-3.090e+02;SOR=0.965;VQSLOD=7.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,25:44:99:572,0,393 1 17725358 rs2244936 C G 724.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.200;SB=-3.530e+02;SOR=0.743;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:32,28:60:99:753,0,847 1 17736578 rs2762890 A G 225.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.077;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=0.471;SB=0.00;SOR=0.346;VQSLOD=10.09;culprit=FS GT:AD:DP:GQ:PL 0/1:13,8:21:99:254,0,463 1 17738570 rs71014950 AC A 1979.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;RPA=3,2;RU=C;ReadPosRankSum=-0.143;SB=-7.620e+02;SOR=0.744;STR;VQSLOD=8.73;culprit=FS GT:AD:DP:GQ:PL 0/1:76,57:135:99:2017,0,2762 1 17739820 rs1075535 T C 479.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.118;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.125;SB=-2.320e+02;SOR=0.527;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:24,21:45:99:508,0,610 1 17740357 rs2003871 G A 307.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.937;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=7.104;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=0.793;SB=-8.097e+01;SOR=0.052;VQSLOD=8.74;culprit=FS GT:AD:DP:GQ:PL 0/1:12,10:22:99:336,0,396 1 17907108 rs35812446 T G 236.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.735;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=-0.132;SB=-1.000e+02;SOR=1.609;VQSLOD=5.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,10:22:99:265,0,283 1 17907468 rs117411279 G A 341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=-0.761;SB=-6.700e+01;SOR=0.551;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:15,13:28:99:370,0,464 1 17907505 rs11203423 A G 327.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.728;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.21;ReadPosRankSum=0.356;SB=0.00;SOR=0.914;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:356,0,262 1 17914846 rs1193343 C T 322.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.925;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=0.220;SB=-4.176e+01;SOR=0.034;VQSLOD=9.18;culprit=SOR GT:AD:DP:GQ:PL 0/1:12,15:27:99:351,0,420 1 17929972 rs75764220 G T 587.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.887;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.535;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=0.773;SB=-1.830e+02;SOR=1.225;VQSLOD=7.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,24:55:99:616,0,826 1 17929990 rs111461054 A C 738.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.503;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.185;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=-0.192;SB=-2.900e+02;SOR=1.293;VQSLOD=6.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,30:68:99:767,0,900 1 17934319 rs114551094 C T 247.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.518;HaplotypeScore=1.8332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.85;ReadPosRankSum=-0.599;SB=-1.580e+02;SOR=0.586;VQSLOD=5.40;culprit=QD GT:AD:DP:GQ:PL 0/1:15,13:28:99:276,0,417 1 17948305 . G GGGCCACAGCAGGTACT 4547.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.79;ReadPosRankSum=0.095;SB=-1.111e+03;SOR=0.687;VQSLOD=8.21;culprit=FS GT:AD:DP:GQ:PL 0/1:29,25:54:99:4585,0,4730 1 17964288 rs7521850 C T 2042.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.941;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.7240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-0.367;SB=-8.260e+02;SOR=0.701;VQSLOD=8.64;culprit=FS GT:AD:DP:GQ:PL 0/1:64,77:141:99:2071,0,1708 1 17981184 rs35255680 A C 453.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.141;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=-1.049;SB=-1.940e+02;SOR=0.746;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:27,19:46:99:482,0,732 1 17982559 rs867984 G A 448.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.394;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.16;ReadPosRankSum=-0.105;SB=-2.460e+02;SOR=0.573;VQSLOD=8.86;culprit=QD GT:AD:DP:GQ:PL 0/1:35,20:55:99:477,0,916 1 17991052 rs6695710 T C 646.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.87;SB=-3.960e+02;SOR=0.770;VQSLOD=4.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:51:675,51,0 1 17991196 rs11203432 A G 192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.28;ReadPosRankSum=0.319;SB=-8.497e+01;SOR=1.022;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:57:221,0,57 1 18016402 rs13376020 A G 1046.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=-0.006;SB=-5.570e+02;SOR=0.688;VQSLOD=8.48;culprit=FS GT:AD:DP:GQ:PL 0/1:63,46:109:99:1075,0,1505 1 18016441 rs13376112 T C 794.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=0.499;SB=-3.980e+02;SOR=0.605;VQSLOD=8.88;culprit=FS GT:AD:DP:GQ:PL 0/1:48,34:82:99:823,0,1201 1 18016491 rs13375581 G A 500.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.898;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.723;SB=-6.400e+01;SOR=0.772;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 0/1:23,18:41:99:529,0,711 1 18017522 rs871087 T C 306.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=0.664;SB=-6.500e+01;SOR=0.317;VQSLOD=10.20;culprit=FS GT:AD:DP:GQ:PL 0/1:12,12:24:99:335,0,364 1 18017558 rs871088 A G 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.330;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=-0.431;SB=-2.080e+02;SOR=0.481;VQSLOD=8.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,16:35:99:375,0,474 1 18017704 rs871089 C T 440.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.193;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.399;HaplotypeScore=2.7786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-0.050;SB=-2.430e+02;SOR=0.392;VQSLOD=10.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,18:35:99:469,0,397 1 18021406 rs905389 T C 1284.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.256;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-1.808;SB=-8.660e+02;SOR=0.582;VQSLOD=8.80;culprit=FS GT:AD:DP:GQ:PL 0/1:49,52:101:99:1313,0,1155 1 18023290 rs2270979 C T 601.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=1.209;SB=-1.980e+02;SOR=0.680;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:13,24:37:99:630,0,382 1 18023365 rs2270978 C T 1009.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.663;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.002;HaplotypeScore=1.8924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=0.039;SB=-3.640e+02;SOR=0.479;VQSLOD=10.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,36:72:99:1038,0,996 1 18023509 rs2270977 T C 1684.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.184;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=1.500;HaplotypeScore=4.3582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-1.624;SB=-9.470e+02;SOR=0.578;VQSLOD=8.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:57,57:114:99:1713,0,1611 1 18023690 rs2270976 A G 1281.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.211;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=0.998;SB=-6.670e+02;SOR=0.614;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:56,51:107:99:1310,0,1547 1 18152582 rs478698 C T 1877.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.837;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=5.165;HaplotypeScore=2.5367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=0.390;SB=-8.130e+02;SOR=1.140;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 0/1:70,69:139:99:1906,0,1813 1 18554345 rs61762155 T C 615.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.997;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=5.060;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.28;ReadPosRankSum=-0.821;SB=-1.150e+02;SOR=1.410;VQSLOD=4.72;culprit=QD GT:AD:DP:GQ:PL 0/1:72,26:98:99:644,0,1996 1 18554356 rs3738087 C T 840.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.641;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=7.746;HaplotypeScore=2.5310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.51;ReadPosRankSum=-1.433;SB=-1.390e+02;SOR=1.698;VQSLOD=4.55;culprit=QD GT:AD:DP:GQ:PL 0/1:79,33:112:99:869,0,2169 1 18661583 rs536540 T C 1667.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.973;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=9.750;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-1.524;SB=-2.510e+02;SOR=1.720;VQSLOD=4.87;culprit=FS GT:AD:DP:GQ:PL 0/1:58,60:118:99:1696,0,1591 1 18702988 rs10796450 T C 506.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.78;SB=0.00;SOR=5.549;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:535,45,0 1 18807339 rs2992756 T C 910.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.26;SB=-8.097e+01;SOR=4.174;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:72:939,72,0 1 18807897 rs2992755 C G 2804.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-1.630e+03;SOR=0.935;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2833,214,0 1 18807938 rs2992754 C A 1188.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.973;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=6.080;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=0.287;SB=-6.860e+02;SOR=0.336;VQSLOD=8.17;culprit=FS GT:AD:DP:GQ:PL 0/1:66,46:112:99:1217,0,1856 1 18807953 rs11261022 C A 1866.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.712;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=1.511;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=1.029;SB=-8.600e+02;SOR=0.910;VQSLOD=7.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,69:119:99:1895,0,1243 1 18808292 rs2992753 C A 4463.77 PASS AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.16;SB=-2.681e+03;SOR=0.836;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,148:148:99:4492,328,0 1 18808465 rs3007718 T A 2476.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.93;SB=-1.199e+03;SOR=0.963;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2505,187,0 1 18808526 rs2992752 A C 2460.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.81;SB=-1.424e+03;SOR=0.774;VQSLOD=5.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2489,181,0 1 18808711 rs2992751 G C 1634.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.835;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.756;HaplotypeScore=3.2872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=0.844;SB=-8.550e+02;SOR=0.579;VQSLOD=9.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,54:100:99:1663,0,1273 1 18809896 rs2992745 A T 585.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=0.00;SOR=5.670;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:614,48,0 1 18810344 rs2992740 G T 940.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.40;SB=-2.550e+02;SOR=2.165;VQSLOD=4.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:75:969,75,0 1 18810484 rs1889861 G A 658.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.058;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.28;ReadPosRankSum=1.194;SB=-4.200e+02;SOR=0.582;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 0/1:42,29:71:99:687,0,1089 1 18810486 rs1889862 A C 672.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.670;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.895;HaplotypeScore=2.7878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=1.100;SB=-4.640e+02;SOR=0.582;VQSLOD=8.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,29:71:99:701,0,1059 1 19018405 rs2076020 G A 681.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.411;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=1.811;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.18;ReadPosRankSum=0.318;SB=-3.250e+02;SOR=1.050;VQSLOD=6.60;culprit=QD GT:AD:DP:GQ:PL 0/1:64,31:95:99:710,0,1662 1 19018432 rs2076019 A C 944.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.465;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=6.580;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.45;ReadPosRankSum=-0.809;SB=-3.730e+02;SOR=1.340;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 0/1:61,39:100:99:973,0,1494 1 19027239 rs2743201 A G 417.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.121;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=0.289;SB=-3.250e+02;SOR=0.663;VQSLOD=6.21;culprit=QD GT:AD:DP:GQ:PL 0/1:26,21:47:99:446,0,657 1 19166243 rs12075191 G A 1211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.692;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=0.054;SB=-6.290e+02;SOR=0.601;VQSLOD=9.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:74,49:123:99:1240,0,2138 1 19166294 rs12033832 G A 2588.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.771;DB;DP=166;Dels=0.00;ExcessHet=3.0103;FS=4.765;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=-0.197;SB=-1.309e+03;SOR=0.420;VQSLOD=7.59;culprit=DP GT:AD:DP:GQ:PL 0/1:74,92:166:99:2617,0,1875 1 19166893 rs6662276 C T 885.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=-0.040;SB=-5.740e+02;SOR=0.693;VQSLOD=9.10;culprit=FS GT:AD:DP:GQ:PL 0/1:46,38:84:99:914,0,1144 1 19168478 . G A 258.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.161;DP=51;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=70.4175;MLEAC=1;MLEAF=0.500;MQ=60.84;MQ0=0;MQRankSum=-0.471;QD=6.31;ReadPosRankSum=1.828;SB=-5.150e-01;SOR=1.022;VQSLOD=0.194;culprit=QD GT:AD:DP:GQ:PL 0/1:32,9:50:99:287,0,443 1 19168478 rs369563018 GA G 165.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.84;MQ0=0;MQRankSum=2.498;POSITIVE_TRAIN_SITE;QD=4.04;RPA=15,14;RU=A;ReadPosRankSum=-0.399;SB=0.00;SOR=0.252;STR;VQSLOD=2.52;culprit=QD GT:AD:DP:GQ:PL 0/1:27,14:51:99:203,0,328 1 19168533 rs12082240 C T 308.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.568;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=61.26;MQ0=0;MQRankSum=1.309;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=-0.049;SB=0.00;SOR=1.061;VQSLOD=3.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,10:17:99:337,0,236 1 19175711 rs35040206 C T 209.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=2.804;SB=0.00;SOR=1.022;VQSLOD=7.08;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,7:12:99:238,0,154 1 19176254 rs6675384 C T 140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.845;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=0.175;SB=-1.765e+00;SOR=1.609;VQSLOD=8.54;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:169,0,176 1 19186129 rs9701796 G C 4016.77 PASS AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-2.492e+03;SOR=0.790;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,128:128:99:4045,289,0 1 19186260 rs9700646 C T 2455.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.59;SB=-1.180e+03;SOR=1.395;VQSLOD=5.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:84:99:2484,181,0 1 19186320 rs9701803 G C 1683.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.02;SB=-5.250e+02;SOR=2.170;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1712,123,0 1 19199221 rs11740 C T 451.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.75;SB=-3.677e+01;SOR=3.767;VQSLOD=8.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:480,36,0 1 19199473 rs28700162 T A 4177.77 PASS AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.42;SB=-2.567e+03;SOR=0.792;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,147:147:99:4206,310,0 1 19200908 rs28529092 G C 2451.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.30;SB=-7.730e+02;SOR=2.049;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2480,181,0 1 19201184 rs6665917 G C 1039.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-1.583e+02;SOR=3.545;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:87:1068,87,0 1 19201211 . T TG 831.73 PASS AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.26;RPA=1,2;RU=G;SB=-1.435e+02;SOR=2.948;STR;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:869,57,0 1 19201956 rs2230708 A G 5087.77 PASS AC=2;AF=1.00;AN=2;DB;DP=177;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7581;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.74;SB=-3.116e+03;SOR=0.774;VQSLOD=4.12;culprit=DP GT:AD:DP:GQ:PL 1/1:0,177:177:99:5116,373,0 1 19202770 rs7550822 T C 1947.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-1.119e+03;SOR=0.976;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1976,141,0 1 19202896 rs2230707 G A 1594.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;SB=-8.120e+02;SOR=0.963;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:49:99:1623,123,0 1 19202917 rs7550938 T C 1514.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.1175;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;SB=-7.770e+02;SOR=1.270;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1543,117,0 1 19202926 rs2230706 T C 1441.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;SB=-7.770e+02;SOR=1.179;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:49:99:1470,111,0 1 19203997 rs2230705 C G 4398.77 PASS AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3976;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-2.635e+03;SOR=0.922;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,143:143:99:4427,319,0 1 19204154 rs6426813 G A 1305.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6823;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=-2.780e+02;SOR=3.003;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1334,105,0 1 19204173 rs6426814 A G 1188.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.89;SB=-1.593e+02;SOR=3.611;VQSLOD=3.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:90:1217,90,0 1 19208145 rs66962914 G GGGTTGCCT 10395.73 PASS AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.06;SB=-2.070e+03;SOR=2.833;VQSLOD=5.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:93:99:10433,280,0 1 19208944 rs28566028 A G 995.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-2.061e+02;SOR=3.056;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:81:1024,81,0 1 19209543 rs6426611 A G 1350.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.74;SB=-5.940e+02;SOR=1.659;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1379,105,0 1 19215834 rs941495 T C 4575.77 PASS AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5975;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-1.981e+03;SOR=1.546;VQSLOD=4.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,147:147:99:4604,337,0 1 19235138 rs41273179 C T 788.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=4.738;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=0.169;SB=-3.740e+02;SOR=0.921;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 0/1:38,31:69:99:817,0,974 1 19236829 rs75991162 C T 497.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.716;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-0.388;SB=-1.050e+02;SOR=0.256;VQSLOD=9.13;culprit=SOR GT:AD:DP:GQ:PL 0/1:26,20:46:99:526,0,814 1 19236844 rs61752549 G A 566.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.871;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=1.033;SB=-1.640e+02;SOR=0.657;VQSLOD=9.00;culprit=FS GT:AD:DP:GQ:PL 0/1:35,22:57:99:595,0,902 1 19237015 rs3748583 A G 1022.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.828;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=2.876;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=-0.616;SB=-6.500e+02;SOR=0.430;VQSLOD=9.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,43:87:99:1051,0,1131 1 19237811 rs75697132 G A 696.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.419;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=0.660;SB=-1.610e+02;SOR=0.527;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:25,26:51:99:725,0,659 1 19238313 rs112968954 A C 175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=-0.816;SB=0.00;SOR=1.085;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:204,0,129 1 19243589 rs3748586 A G 1359.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.583;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=1.680;HaplotypeScore=1.6229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-0.112;SB=-7.270e+02;SOR=0.530;VQSLOD=10.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,51:97:99:1388,0,1186 1 19243651 rs78284463 G A 531.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.188;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=3.118;HaplotypeScore=1.9985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=-0.443;SB=-8.500e+01;SOR=1.392;VQSLOD=6.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,19:48:99:560,0,806 1 19401405 rs2281748 G A 1508.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.947;DB;DP=160;Dels=0.00;ExcessHet=3.0103;FS=2.077;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=0.687;SB=-6.260e+02;SOR=0.872;VQSLOD=7.09;culprit=DP GT:AD:DP:GQ:PL 0/1:102,58:160:99:1537,0,2789 1 19404256 rs10158669 A C 268.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.552;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=4.624;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=-0.813;SB=-2.302e+01;SOR=2.746;VQSLOD=5.40;culprit=FS GT:AD:DP:GQ:PL 0/1:16,12:28:99:297,0,365 1 19411129 rs1043905 A G 4621.77 PASS AC=2;AF=1.00;AN=2;DB;DP=160;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.89;SB=-2.443e+03;SOR=1.068;VQSLOD=5.74;culprit=DP GT:AD:DP:GQ:PL 1/1:0,160:160:99:4650,337,0 1 19412464 rs2274009 C T 531.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.858;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=0.792;SB=0.00;SOR=1.220;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:10,16:26:99:560,0,311 1 19413261 rs12584 T A 1180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.686;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=-0.654;SB=-7.270e+02;SOR=0.776;VQSLOD=7.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:72,48:120:99:1209,0,1974 1 19413420 rs2274008 T G 1255.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.35;SB=-1.971e+02;SOR=3.258;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:96:1284,96,0 1 19415304 rs1043899 C T 363.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.701;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-1.210;SB=-6.800e+01;SOR=0.874;VQSLOD=10.20;culprit=FS GT:AD:DP:GQ:PL 0/1:12,14:26:99:392,0,344 1 19415439 rs16862517 C T 967.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.056;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=1.581;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=1.777;SB=-6.260e+02;SOR=0.536;VQSLOD=8.91;culprit=QD GT:AD:DP:GQ:PL 0/1:63,43:106:99:996,0,1548 1 19420392 rs1106839 G A 2338.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-9.500e+02;SOR=1.673;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2367,175,0 1 19426199 rs2236377 G A 1131.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;SB=-3.310e+02;SOR=2.179;VQSLOD=7.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:87:1160,87,0 1 19433449 rs6426677 A G 1568.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.86;SB=-3.270e+02;SOR=2.687;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1597,117,0 1 19440107 rs9661719 A G 1205.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.74;SB=-1.593e+02;SOR=3.611;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:90:1234,90,0 1 19440354 rs6672298 C T 1764.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=0.636;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-0.166;SB=-9.500e+02;SOR=0.616;VQSLOD=9.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:73,65:138:99:1793,0,1930 1 19441212 rs2274003 A G 199.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.025;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=-1.034;SB=0.00;SOR=0.446;VQSLOD=10.05;culprit=FS GT:AD:DP:GQ:PL 0/1:11,8:19:99:228,0,354 1 19441685 rs56775120 GTGCACA G 342.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.28;RPA=2,1;RU=TGCACA;ReadPosRankSum=0.309;SB=-1.300e+02;SOR=1.329;STR;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:15:99:380,0,462 1 19441695 rs200844391 A G 128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.73;ReadPosRankSum=0.236;SB=-6.700e+01;SOR=0.760;VQSLOD=8.48;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:157,0,236 1 19441717 rs58132182 T A 168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.98;ReadPosRankSum=0.976;SB=-6.400e+01;SOR=0.527;VQSLOD=8.10;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:197,0,203 1 19443952 rs16862547 G A 838.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.393;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=0.156;SB=-2.780e+02;SOR=0.542;VQSLOD=10.19;culprit=FS GT:AD:DP:GQ:PL 0/1:27,31:58:99:867,0,693 1 19444131 rs148170475 T C 284.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.101;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=0.752;SB=-1.767e+00;SOR=1.981;VQSLOD=5.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,9:17:99:313,0,251 1 19447498 rs6426678 T C 230.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.160;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=-0.541;SB=0.00;SOR=0.392;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:12,8:20:99:259,0,391 1 19447843 rs1044010 C G 918.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.612;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.968;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-1.501;SB=-4.240e+02;SOR=0.557;VQSLOD=8.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,30:63:99:947,0,1032 1 19448326 rs6681662 C T 685.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.889;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=12.414;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=-0.852;SB=-1.090e+02;SOR=2.522;VQSLOD=5.10;culprit=FS GT:AD:DP:GQ:PL 0/1:22,23:45:99:714,0,565 1 19468080 rs10047155 A G 2032.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.474;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=1.038;SB=-1.028e+03;SOR=0.718;VQSLOD=8.80;culprit=FS GT:AD:DP:GQ:PL 0/1:84,66:150:99:2061,0,2197 1 19470749 rs2296109 G C 1018.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-2.790e+02;SOR=2.448;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:78:1047,78,0 1 19471388 rs2274000 A G 1133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.863;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=3.315;HaplotypeScore=3.7845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=1.406;SB=-2.300e+02;SOR=1.124;VQSLOD=7.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,39:90:99:1162,0,1342 1 19474975 rs2296108 T G 590.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.465;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=0.808;SB=-3.540e+02;SOR=0.593;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:17,20:37:99:619,0,439 1 19476307 . G GA 72.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;DP=12;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.61;RPA=12,13;RU=A;ReadPosRankSum=0.352;SB=-3.900e+01;SOR=0.760;STR;VQSLOD=3.33;culprit=QD GT:AD:DP:GQ:PL 0/1:6,5:12:91:110,0,91 1 19481477 rs117574323 T C 1322.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=2.506;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-0.621;SB=-7.450e+02;SOR=1.004;VQSLOD=7.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,56:108:99:1351,0,1272 1 19483209 rs10799710 A G 427.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.962;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=1.539;SB=-3.200e+01;SOR=0.927;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:18,14:32:99:456,0,552 1 19486839 rs946419 T C 945.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-1.443e+02;SOR=3.056;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:78:974,78,0 1 19487656 rs3748759 T C 1806.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.439;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=3.448;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=0.103;SB=-7.910e+02;SOR=1.035;VQSLOD=7.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,67:121:99:1835,0,1496 1 19488493 rs3748758 A C 129.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=-1.480;SB=0.00;SOR=0.693;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:158,0,156 1 19488839 rs1999967 C A 554.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=0.00;SOR=5.549;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:583,45,0 1 19489275 rs10799715 G A 269.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.483;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=-0.515;SB=0.00;SOR=0.941;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:298,0,226 1 19491857 rs3748757 T C 2504.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-1.489e+03;SOR=0.693;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2533,190,0 1 19499560 rs16862578 T C 1216.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.195;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.797;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=0.370;SB=-6.630e+02;SOR=0.586;VQSLOD=9.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,43:89:99:1245,0,1263 1 19499835 rs951908 G C 2667.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.77;SB=-1.304e+03;SOR=1.136;VQSLOD=5.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2696,196,0 1 19500729 rs6694521 G A 1730.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-3.930e+02;SOR=2.790;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1759,132,0 1 19504300 rs2066002 G A 768.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.187;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=-0.676;SB=-2.290e+02;SOR=0.516;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:16,29:45:99:797,0,456 1 19510394 rs3762396 A G 1813.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-1.021e+03;SOR=1.034;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1842,132,0 1 19518659 rs11588032 G A 902.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.100;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7260;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=1.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=0.644;SB=-2.130e+02;SOR=0.778;VQSLOD=3.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,33:68:99:931,0,960 1 19519782 rs10799734 C T 297.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.341;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=1.233;SB=0.00;SOR=0.495;VQSLOD=10.11;culprit=FS GT:AD:DP:GQ:PL 0/1:14,11:25:99:326,0,499 1 19519887 rs72651403 G C 1375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=3.604;HaplotypeScore=2.7477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=0.548;SB=-4.570e+02;SOR=1.085;VQSLOD=6.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:74,49:123:99:1404,0,1860 1 19549343 rs2073106 G C 2290.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.265;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=4.780;HaplotypeScore=4.4693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=-0.781;SB=-1.281e+03;SOR=0.790;VQSLOD=5.62;culprit=DP GT:AD:DP:GQ:PL 0/1:65,93:158:99:2319,0,1644 1 19549759 rs710870 G A 214.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.210;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=1.333;SB=0.00;SOR=0.307;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:14,8:22:99:243,0,451 1 19549864 rs2073105 T C 1034.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=-0.126;SB=-5.240e+02;SOR=0.489;VQSLOD=9.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,42:100:99:1063,0,1599 1 19554099 rs7515397 T G 499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.96;SB=0.00;SOR=5.283;VQSLOD=8.38;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,13:13:39:528,39,0 1 19557281 rs12128595 G C 320.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.193;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.38;ReadPosRankSum=-2.393;SB=0.00;SOR=1.473;VQSLOD=8.82;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,10:15:99:349,0,147 1 19557713 rs2275403 G C 1043.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=-3.876e+01;SOR=5.211;VQSLOD=5.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:81:1072,81,0 1 19558018 rs55748756 C T 804.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.764;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=-0.904;SB=-3.680e+02;SOR=0.573;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:35,32:67:99:833,0,948 1 19558096 rs60543370 A T 293.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.867;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=4.295;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=-0.207;SB=-1.370e+02;SOR=0.169;VQSLOD=9.66;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,13:28:99:322,0,459 1 19559729 rs16862625 A G 598.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.009;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=0.129;SB=-1.520e+02;SOR=0.795;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:23,21:44:99:627,0,622 1 19564650 rs2073104 C G 1134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.773;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=0.344;SB=-5.670e+02;SOR=0.562;VQSLOD=9.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,44:100:99:1163,0,1430 1 19565338 rs709682 C T 640.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.018;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.117;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-0.790;SB=-2.790e+02;SOR=0.970;VQSLOD=7.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,24:49:99:669,0,650 1 19565344 rs709683 C G 1569.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.04;SB=-8.070e+02;SOR=1.112;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1598,114,0 1 19566296 rs2273046 T C 3242.77 PASS AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;SB=-1.930e+03;SOR=0.712;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,107:107:99:3271,244,0 1 19566627 rs710869 A G 88.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.112;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.93;ReadPosRankSum=-1.233;SB=-2.203e+01;SOR=1.329;VQSLOD=4.84;culprit=QD GT:AD:DP:GQ:PL 0/1:13,5:18:99:117,0,367 1 19568603 rs12567768 T A 138.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.809;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=0.483;SB=-3.377e+01;SOR=0.132;VQSLOD=9.50;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,6:13:99:167,0,239 1 19568722 rs710866 G C 2339.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9131;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.41;SB=-4.900e+02;SOR=3.007;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2368,172,0 1 19568972 rs710865 A G 3973.77 PASS AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-1.315e+03;SOR=2.191;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,124:124:99:4002,289,0 1 19570426 rs2294944 C G 589.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.314;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.80;ReadPosRankSum=1.217;SB=-2.860e+02;SOR=0.576;VQSLOD=8.84;culprit=QD GT:AD:DP:GQ:PL 0/1:43,24:67:99:618,0,1182 1 19571586 rs75373366 C T 488.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.455;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-0.106;SB=-1.360e+02;SOR=0.495;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:18,19:37:99:517,0,525 1 19578062 rs17523685 C T 395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.866;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.707;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=0.184;SB=-1.270e+02;SOR=0.262;VQSLOD=9.26;culprit=SOR GT:AD:DP:GQ:PL 0/1:21,16:37:99:424,0,668 1 19578192 rs2294942 G A 239.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.309;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=0.054;SB=-6.300e+01;SOR=0.646;VQSLOD=10.03;culprit=FS GT:AD:DP:GQ:PL 0/1:17,9:26:99:268,0,576 1 19581226 rs735026 G A 1042.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.350;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.783;HaplotypeScore=3.6590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=-0.839;SB=-6.090e+02;SOR=0.848;VQSLOD=7.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,44:93:99:1071,0,1452 1 19581467 rs1774081 C T 166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.632;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.58;ReadPosRankSum=-1.483;SB=-9.732e-01;SOR=1.371;VQSLOD=5.87;culprit=QD GT:AD:DP:GQ:PL 0/1:15,7:22:99:195,0,461 1 19582563 rs1557133 G A 1570.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-3.500e+02;SOR=2.170;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1599,117,0 1 19583400 rs1774075 A G 1434.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-7.760e+02;SOR=1.179;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1463,111,0 1 19583684 rs1774074 C T 542.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.893;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=4.045;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=-0.239;SB=-2.500e+02;SOR=1.163;VQSLOD=6.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,21:51:99:571,0,839 1 19583725 rs1738017 T C 633.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.513;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=-0.772;SB=-2.970e+02;SOR=0.816;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:30,23:53:99:662,0,928 1 19583734 rs4912057 G A 957.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.775;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=-0.088;SB=-5.180e+02;SOR=0.645;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:22,32:54:99:986,0,590 1 19584004 rs1042380 G A 1029.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=2.024;HaplotypeScore=2.7877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=0.572;SB=-4.900e+02;SOR=0.435;VQSLOD=10.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,38:70:99:1058,0,956 1 19584578 rs12121472 T C 1051.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.329;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.938;HaplotypeScore=4.3950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-1.015;SB=-2.840e+02;SOR=0.903;VQSLOD=7.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,40:89:99:1080,0,1297 1 19585207 rs2294939 G A 1371.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.577;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.700;HaplotypeScore=6.2216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=1.376;SB=-5.340e+02;SOR=0.859;VQSLOD=7.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:78,55:133:99:1400,0,2005 1 19595137 rs2235795 C T 927.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.385;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=-0.600;SB=-4.370e+02;SOR=0.639;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 0/1:33,37:70:99:956,0,868 1 19595892 rs6665423 G A 744.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.515;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=0.329;SB=-2.040e+02;SOR=0.788;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:26,28:54:99:773,0,698 1 19596124 rs2235794 C T 437.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.727;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.475;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=-0.865;SB=-1.870e+02;SOR=0.361;VQSLOD=9.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,17:33:99:466,0,449 1 19596156 rs6665756 G T 525.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.729;HaplotypeScore=1.8318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.378;SB=-2.860e+02;SOR=0.307;VQSLOD=10.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,20:42:99:554,0,539 1 19596841 rs7536049 G A 426.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.777;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.163;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-0.349;SB=-9.732e-01;SOR=2.428;VQSLOD=5.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,14:29:99:455,0,467 1 19609522 rs140599506 G A 295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.874;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=44.46;MQ0=13;MQRankSum=-0.501;QD=4.55;ReadPosRankSum=-0.020;SB=-1.630e+02;SOR=0.586;VQSLOD=1.25;culprit=QD GT:AD:DP:GQ:PL 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G GC 779.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQ0=0;MQRankSum=1.225;POSITIVE_TRAIN_SITE;QD=11.47;RPA=6,7;RU=C;ReadPosRankSum=0.804;SB=-2.660e+02;SOR=0.693;STR;VQSLOD=2.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,28:73:99:817,0,1240 1 19934900 rs61740466 G A 2204.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.755;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=0.616;HaplotypeScore=4.5888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=0.524;SB=-9.370e+02;SOR=0.624;VQSLOD=7.77;culprit=DP GT:AD:DP:GQ:PL 0/1:78,80:158:99:2233,0,2167 1 19948868 rs2281238 G A 126.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.437;SB=0.00;SOR=0.551;VQSLOD=9.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,5:11:99:155,0,213 1 19950062 rs1737428 T C 250.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.788;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=1.880;SB=-5.900e+01;SOR=0.892;VQSLOD=8.68;culprit=FS GT:AD:DP:GQ:PL 0/1:12,10:22:99:279,0,329 1 19972586 rs11810271 A G 320.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.038;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.527;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=-0.403;SB=-9.300e+01;SOR=1.061;VQSLOD=7.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,13:32:99:349,0,473 1 20027034 rs71704175 ATCT A 755.73 PASS AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=38.95;RPA=2,1;RU=TCT;SB=0.00;SOR=5.283;STR;VQSLOD=8.90;culprit=QD GT:AD:DP:GQ:PL 1/1:0,13:13:39:793,39,0 1 20066178 rs11802745 C G 271.77 PASS 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G T 1737.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.747;DP=121;Dels=0.00;ExcessHet=3.0103;FS=6.289;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.36;ReadPosRankSum=1.415;SB=-5.230e+02;SOR=1.370;VQSLOD=4.23;culprit=FS GT:AD:DP:GQ:PL 0/1:57,64:121:99:1766,0,1618 1 20649814 rs4655194 T C 836.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.286;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.937;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=0.265;SB=-2.480e+02;SOR=0.928;VQSLOD=7.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,32:80:99:865,0,1304 1 20657352 rs2072753 T C 1891.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.717;DB;DP=189;Dels=0.00;ExcessHet=3.0103;FS=4.269;HaplotypeScore=2.9156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=0.194;SB=-1.120e+03;SOR=1.018;VQSLOD=6.48;culprit=DP GT:AD:DP:GQ:PL 0/1:109,80:189:99:1920,0,2729 1 20659300 . C T 866.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.44;ReadPosRankSum=0.279;SB=-5.670e+02;SOR=0.752;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 0/1:45,38:83:99:895,0,1136 1 20671833 rs10799629 C A 869.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.177;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.837;HaplotypeScore=1.7987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=-1.105;SB=-4.810e+02;SOR=0.896;VQSLOD=7.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,40:85:99:898,0,1146 1 20671961 rs11582960 G A 1463.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=1.458;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-1.250;SB=-8.570e+02;SOR=0.862;VQSLOD=7.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,61:119:99:1492,0,1436 1 20672101 rs4655200 C T 684.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.105;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=-0.522;SB=-2.440e+02;SOR=0.977;VQSLOD=7.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,27:55:99:713,0,717 1 20676597 rs41264539 G A 1625.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.133;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=4.246;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=-1.188;SB=-7.370e+02;SOR=0.305;VQSLOD=8.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,66:109:99:1654,0,1109 1 20676932 rs179471 T A 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.783;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=-0.868;SB=0.00;SOR=0.446;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:11,8:19:99:241,0,373 1 20677490 rs80211240 C A 939.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.477;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=2.144;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=0.063;SB=-2.570e+02;SOR=1.094;VQSLOD=7.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,36:80:99:968,0,1195 1 20678394 rs41265045 G A 232.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-0.563;SB=-1.765e+00;SOR=1.802;VQSLOD=8.66;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:261,0,220 1 20680718 rs2072751 G A 1392.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.701;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=7.858;HaplotypeScore=23.0593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-1.109;SB=-8.610e+02;SOR=0.278;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 0/1:49,53:103:99:1421,0,1319 1 20680760 rs230180 A G 985.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.075;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.875;HaplotypeScore=39.7982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.207;SB=-4.930e+02;SOR=0.529;VQSLOD=9.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,36:87:99:1014,0,1160 1 20829560 rs2641114 G A 1267.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=-4.800e+02;SOR=1.845;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:96:1296,96,0 1 20846736 rs1815542 G A 397.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.86;SB=-2.960e+02;SOR=0.693;VQSLOD=4.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:30:426,30,0 1 20915531 rs602950 A G 197.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=-0.566;SB=-6.100e+01;SOR=0.627;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:226,0,135 1 20915589 rs3215400 TC T 212.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;RPA=3,2;RU=C;ReadPosRankSum=0.178;SB=-1.090e+02;SOR=0.446;STR;VQSLOD=10.06;culprit=FS GT:AD:DP:GQ:PL 0/1:10,8:18:99:250,0,361 1 20915701 rs2072671 A C 561.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.407;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-1.674;SB=-3.120e+02;SOR=0.884;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:21,21:42:99:590,0,460 1 20940258 rs488991 T A 3776.77 PASS AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.46;SB=-1.630e+03;SOR=1.445;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,124:124:99:3805,283,0 1 20964328 rs2298298 A G 314.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.62;SB=-8.197e+01;SOR=2.494;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:343,27,0 1 20971980 rs67160805 C CA 204.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.330;DB;DP=21;ExcessHet=3.0103;FS=6.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;RPA=17,18;RU=A;ReadPosRankSum=0.661;SB=-1.807e+01;SOR=2.925;STR;VQSLOD=5.63;culprit=FS GT:AD:DP:GQ:PL 0/1:6,14:21:69:242,0,69 1 20972048 rs3131713 G A 1447.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.1680;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.96;SB=-6.460e+02;SOR=1.270;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:52:99:1476,114,0 1 20976759 rs540038 C T 513.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-1.085e+02;SOR=2.712;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:542,42,0 1 20977221 rs686658 A T 1426.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.97;SB=-2.780e+02;SOR=3.056;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1455,108,0 1 20978832 rs6893 T C 1617.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-4.820e+02;SOR=2.208;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:49:99:1646,123,0 1 20979307 . G GT 3669.73 PASS AC=2;AF=1.00;AN=2;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.95;RPA=3,4;RU=T;SB=-1.822e+03;SOR=0.751;STR;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:107:99:3707,316,0 1 20980880 rs607254 G A 2480.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4034;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.22;SB=-1.321e+03;SOR=0.828;VQSLOD=7.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:78:99:2509,187,0 1 20981806 rs592851 G A 307.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=0.00;SOR=4.804;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:336,27,0 1 20982631 rs4704 G A 5017.77 PASS AC=2;AF=1.00;AN=2;DB;DP=166;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;SB=-2.922e+03;SOR=0.781;VQSLOD=6.31;culprit=DP GT:AD:DP:GQ:PL 1/1:0,165:166:99:5046,376,0 1 20987873 rs537816 G C 2305.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3371;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-1.189e+03;SOR=1.011;VQSLOD=5.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2334,169,0 1 20992606 rs630484 G T 2486.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.58;SB=-6.950e+02;SOR=2.441;VQSLOD=4.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2515,196,0 1 20992819 rs631357 G C 3136.77 PASS AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-1.350e+03;SOR=1.586;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:102:99:3165,226,0 1 20992933 rs573268 G C 466.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-8.097e+01;SOR=2.985;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:495,36,0 1 21024901 rs522496 C T 509.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.765;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=-0.361;SB=-2.840e+02;SOR=0.619;VQSLOD=10.18;culprit=FS GT:AD:DP:GQ:PL 0/1:12,22:34:99:538,0,360 1 21044219 rs601392 A C 364.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.789;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.831;HaplotypeScore=4.4811;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=1.468;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=-1.666;SB=-8.197e+01;SOR=0.223;VQSLOD=0.110;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,13:20:99:393,0,193 1 21050958 rs592060 C T 1074.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.826;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.087;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=-0.227;SB=-3.280e+02;SOR=1.199;VQSLOD=7.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,38:74:99:1103,0,1092 1 21091861 rs1985278 G T 2764.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-7.570e+02;SOR=2.387;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2793,208,0 1 21143733 rs10916870 T A 355.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.34;SB=0.00;SOR=4.977;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:384,33,0 1 21143742 . A T 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.89;ReadPosRankSum=1.909;SB=0.00;SOR=0.859;VQSLOD=8.18;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:203,0,127 1 21143762 rs35569463 T A 154.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.216;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.6316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.10;ReadPosRankSum=0.000;SB=-1.765e+00;SOR=0.963;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 0/1:11,6:17:99:183,0,345 1 21143770 rs376814165 TA T 441.73 PASS AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.54;RPA=9,8;RU=A;SB=-3.077e+01;SOR=4.407;STR;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:479,54,0 1 21143782 rs72224471 A AAT 974.73 PASS AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.28;SB=-1.140e+02;SOR=3.816;VQSLOD=6.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:1012,63,0 1 21167404 rs2230573 A G 1932.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;SB=-9.740e+02;SOR=1.306;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:1961,138,0 1 21175855 rs7525082 C A 496.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-4.076e+01;SOR=4.174;VQSLOD=7.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:525,42,0 1 21179969 rs7542882 G A 1090.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;SB=-3.020e+02;SOR=2.432;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:87:1119,87,0 1 21180181 rs2305463 C T 1084.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-3.200e+02;SOR=2.303;VQSLOD=7.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:84:1113,84,0 1 21180250 rs7543140 G A 338.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.23;SB=-1.135e+02;SOR=1.981;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:367,27,0 1 21191416 rs3816454 T G 744.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.58;SB=-4.520e+02;SOR=1.101;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:54:773,54,0 1 21191430 rs3816455 A G 777.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.41;SB=-3.210e+02;SOR=1.519;VQSLOD=5.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:806,60,0 1 21220375 rs2275468 T G 425.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.23;SB=-3.976e+01;SOR=3.611;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:454,33,0 1 21267993 rs35176330 G C 779.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.39;ReadPosRankSum=0.526;SB=-4.670e+02;SOR=0.674;VQSLOD=8.44;culprit=FS GT:AD:DP:GQ:PL 0/1:50,33:83:99:808,0,1375 1 21327637 rs1395508 C T 1683.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.02;SB=-7.090e+02;SOR=1.436;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1712,129,0 1 21377314 rs6426663 C T 1680.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.32;SB=-4.050e+02;SOR=2.393;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1709,126,0 1 21554319 rs6426676 A G 651.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;SB=-1.911e+02;SOR=2.093;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:51:680,51,0 1 21571601 rs12562197 G A 1594.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.812;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=1.275;SB=-7.650e+02;SOR=0.712;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 0/1:41,66:107:99:1623,0,1014 1 21573722 rs2229450 G A 1174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.689;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=1.727;HaplotypeScore=3.3909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=1.190;SB=-4.200e+02;SOR=0.940;VQSLOD=7.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,43:102:99:1203,0,1511 1 21582348 rs2076282 T C 345.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.20;ReadPosRankSum=1.143;SB=-4.276e+01;SOR=0.446;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:7,12:19:99:374,0,224 1 21583925 rs2076280 C T 826.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.667;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=-0.829;SB=-2.840e+02;SOR=0.331;VQSLOD=10.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,32:59:99:855,0,763 1 21583973 rs3026879 A G 1135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.780;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.376;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.270;SB=-5.220e+02;SOR=0.311;VQSLOD=10.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,42:79:99:1164,0,1007 1 21584941 rs212526 T C 145.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.412;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.000;SB=-1.765e+00;SOR=1.911;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:174,0,136 1 21625145 rs10916958 T C 973.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.021;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=0.368;SB=-3.950e+02;SOR=0.592;VQSLOD=9.90;culprit=FS GT:AD:DP:GQ:PL 0/1:38,41:79:99:1002,0,984 1 21671943 rs2072654 T G 224.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=0.974;SB=-1.300e+02;SOR=0.593;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:253,0,99 1 21738020 rs2316499 A G 861.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.73;SB=-5.830e+02;SOR=0.693;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:63:890,63,0 1 21752682 rs71512992 G A 301.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.619;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=43.23;MQ0=0;MQRankSum=-3.178;QD=5.03;ReadPosRankSum=0.017;SB=-1.420e+02;SOR=0.404;VQSLOD=1.25;culprit=QD GT:AD:DP:GQ:PL 0/1:44,16:60:99:330,0,996 1 21754283 rs6426689 A C 1140.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.52;SB=-5.740e+02;SOR=1.151;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:84:1169,84,0 1 21754920 rs183181907 G T 748.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.081;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.310;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=48.95;MQ0=0;MQRankSum=0.516;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=0.312;SB=-1.530e+02;SOR=1.085;VQSLOD=0.105;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,28:53:99:777,0,664 1 21755345 rs41302023 T C 448.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.628;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.54;MQ0=2;MQRankSum=-0.496;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-0.459;SB=-2.780e+02;SOR=0.481;VQSLOD=2.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,20:31:99:477,0,258 1 21755347 rs41310392 C T 235.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.96;MQ0=3;MQRankSum=0.788;POSITIVE_TRAIN_SITE;QD=7.14;ReadPosRankSum=0.638;SB=-1.210e+02;SOR=0.859;VQSLOD=1.07;culprit=QD GT:AD:DP:GQ:PL 0/1:22,11:33:99:264,0,449 1 21755756 rs56343055 G C 5747.77 PASS AC=2;AF=1.00;AN=2;DB;DP=194;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-3.393e+03;SOR=0.995;VQSLOD=4.79;culprit=DP GT:AD:DP:GQ:PL 1/1:0,194:194:99:5776,427,0 1 21755867 rs7522332 A G 3770.77 PASS AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2802;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=2;POSITIVE_TRAIN_SITE;QD=30.66;SB=-1.564e+03;SOR=1.387;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,123:123:99:3799,280,0 1 21755906 rs3738922 G A 2611.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=2;POSITIVE_TRAIN_SITE;QD=29.68;SB=-1.222e+03;SOR=1.329;VQSLOD=5.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2640,202,0 1 21756008 rs3894725 G T 879.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-1.523e+02;SOR=3.180;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:69:908,69,0 1 21756069 rs7532750 G A 376.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.65;SB=0.00;SOR=4.804;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:405,30,0 1 21763132 rs10916990 T A 186.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.398;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=0.487;SB=-1.280e+02;SOR=0.223;VQSLOD=9.69;culprit=SOR GT:AD:DP:GQ:PL 0/1:4,8:12:96:215,0,96 1 21795388 rs1827293 A G 379.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.050;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.83;ReadPosRankSum=0.062;SB=-1.990e+02;SOR=0.802;VQSLOD=9.70;culprit=QD GT:AD:DP:GQ:PL 0/1:26,17:43:99:408,0,639 1 21797996 rs2004380 G A 248.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.924;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=1.405;SB=-9.000e+01;SOR=1.179;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:19:99:277,0,246 1 21799489 . T C 256.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.112;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.26;ReadPosRankSum=-1.171;SB=-1.480e+02;SOR=0.307;VQSLOD=8.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,12:18:99:285,0,173 1 21799823 rs1971328 A G 463.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.285;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=-0.109;SB=-1.766e+00;SOR=1.609;VQSLOD=9.16;culprit=FS GT:AD:DP:GQ:PL 0/1:15,14:29:99:492,0,480 1 21801346 rs7531217 G A 366.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.896;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=5.315;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.57;ReadPosRankSum=-0.053;SB=-1.765e+00;SOR=3.334;VQSLOD=5.44;culprit=FS GT:AD:DP:GQ:PL 0/1:5,12:17:99:395,0,149 1 21804815 rs7535654 T G 3406.77 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=-1.339e+03;SOR=1.725;VQSLOD=4.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:105:99:3435,250,0 1 21805730 rs2316504 A G 591.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.979;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=5.316;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=0.341;SB=-2.080e+02;SOR=0.191;VQSLOD=9.95;culprit=FS GT:AD:DP:GQ:PL 0/1:31,23:54:99:620,0,925 1 21805978 rs4654948 G A 375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.415;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.665;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-0.401;SB=-5.800e+01;SOR=1.042;VQSLOD=7.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,14:33:99:404,0,573 1 21809524 rs71512993 A C 40.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.71;MQ0=0;MQRankSum=-2.777;QD=2.91;ReadPosRankSum=-1.521;SB=0.00;SOR=0.307;VQSLOD=1.73;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:14:69:69,0,263 1 21880818 rs71774981 C CATAT 1662.73 PASS AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.17;RPA=7,9;RU=AT;SB=-4.031e+02;SOR=2.303;STR;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:37:85:1700,85,0 1 21889635 rs1780316 T C 1539.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-8.310e+02;SOR=0.818;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1568,117,0 1 21890386 rs1256335 G A 333.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.34;SB=0.00;SOR=4.977;VQSLOD=8.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:362,30,0 1 21890464 rs1767428 A G 3102.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.26;SB=-4.176e+01;SOR=7.328;VQSLOD=2.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:3131,229,0 1 21900420 rs2275370 A G 2369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-8.240e+02;SOR=1.997;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2398,178,0 1 21904206 rs1697405 C T 1799.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.90;SB=0.00;SOR=7.784;VQSLOD=2.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1828,144,0 1 21904267 rs1697406 A G 440.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.91;SB=0.00;SOR=5.283;VQSLOD=7.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:469,36,0 1 21928344 rs2275366 C G 370.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.753;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=-0.636;SB=0.00;SOR=0.693;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:12,12:24:99:399,0,362 1 21929260 rs829368 A G 1557.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.32;SB=-1.046e+03;SOR=0.804;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1586,114,0 1 21929456 rs3215988 GC G 346.73 PASS AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;RPA=8,7;RU=C;SB=-6.897e+01;SOR=2.494;STR;VQSLOD=7.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:15:33:384,33,0 1 21932530 rs1767443 C A 194.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=0.763;SB=-2.677e+01;SOR=0.223;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:14:99:223,0,161 1 21934667 rs829371 G A 363.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.509;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-1.830;SB=-1.540e+02;SOR=1.230;VQSLOD=6.93;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:14,16:30:99:392,0,434 1 21934693 rs72660316 T C 396.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.272;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=7.555;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=0.099;SB=-2.460e+02;SOR=0.349;VQSLOD=5.44;culprit=FS GT:AD:DP:GQ:PL 0/1:18,17:35:99:425,0,530 1 21935433 rs861212 G T 827.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.326;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.775;HaplotypeScore=5.1830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.20;ReadPosRankSum=-1.951;SB=-4.660e+02;SOR=0.580;VQSLOD=8.68;culprit=QD GT:AD:DP:GQ:PL 0/1:65,36:101:99:856,0,1751 1 21935467 rs12130950 G A 1395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.581;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=4.493;HaplotypeScore=2.6147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=-1.291;SB=-5.890e+02;SOR=1.217;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 0/1:28,56:84:99:1424,0,638 1 21937807 rs1256281 C G 667.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.65;SB=-3.876e+01;SOR=4.407;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:696,51,0 1 21938375 rs2275364 T G 906.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=0.847;SB=-4.270e+02;SOR=0.621;VQSLOD=9.76;culprit=FS GT:AD:DP:GQ:PL 0/1:37,33:70:99:935,0,1098 1 21939493 rs3767113 G C 1185.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.201;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.94;ReadPosRankSum=-1.575;SB=-3.530e+02;SOR=0.741;VQSLOD=8.09;culprit=FS GT:AD:DP:GQ:PL 0/1:27,43:70:99:1214,0,711 1 21939741 rs1256282 G C 1004.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=4.192;HaplotypeScore=1.9092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=0.530;SB=-3.580e+02;SOR=0.276;VQSLOD=9.65;culprit=SOR GT:AD:DP:GQ:PL 0/1:34,38:72:99:1033,0,1001 1 21940555 rs2275363 C T 706.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.001;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=-0.298;SB=-2.330e+02;SOR=0.941;VQSLOD=7.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,28:65:99:735,0,918 1 21944352 rs748488 A G 860.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.342;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.368;SB=-3.300e+02;SOR=0.963;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 0/1:34,31:66:99:889,0,886 1 21945389 rs12143471 C T 731.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=9.404;HaplotypeScore=7.5858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.385;SB=-3.820e+02;SOR=0.105;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 0/1:23,31:55:99:760,0,664 1 21946396 rs12134357 T C 425.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.031;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=1.000;SB=-9.301e+01;SOR=0.352;VQSLOD=9.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,15:25:99:454,0,301 1 21946415 rs1681255 G A 1006.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.56;SB=-2.431e+02;SOR=2.621;VQSLOD=6.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:78:1035,78,0 1 21953287 rs7354914 G A 1259.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.266;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=1.660;HaplotypeScore=2.5767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.607;SB=-4.470e+02;SOR=0.963;VQSLOD=7.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,53:116:99:1288,0,1715 1 21953304 rs1531829 G A 1858.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.352;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=3.305;HaplotypeScore=3.7330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-0.305;SB=-5.460e+02;SOR=1.103;VQSLOD=7.41;culprit=DP GT:AD:DP:GQ:PL 0/1:78,73:151:99:1887,0,2026 1 21953436 rs829412 A G 5948.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.958;DB;DP=215;Dels=0.00;ExcessHet=3.0103;FS=3.687;HaplotypeScore=6.3259;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.67;ReadPosRankSum=1.402;SB=-3.161e+03;SOR=0.726;VQSLOD=3.07;culprit=DP GT:AD:DP:GQ:PL 1/1:1,214:215:99:5977,402,0 1 21961338 rs12045185 G A 922.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.759;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=4.355;HaplotypeScore=2.8089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=0.940;SB=-1.870e+02;SOR=1.579;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 0/1:26,34:61:99:951,0,651 1 21961339 rs10799706 A T 1931.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8089;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.20;SB=-5.560e+02;SOR=2.226;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:61:99:1960,147,0 1 22013771 rs10493008 G A 392.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.098;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=-0.512;SB=-2.000e+02;SOR=0.836;VQSLOD=9.91;culprit=FS GT:AD:DP:GQ:PL 0/1:18,17:35:99:421,0,545 1 22028111 rs6689260 C A 554.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.477;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.268;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=1.718;SB=-2.360e+02;SOR=1.386;VQSLOD=6.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,24:45:99:583,0,537 1 22032472 . A AT 663.73 PASS AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.93;RPA=2,3;RU=T;SB=-3.280e+02;SOR=0.793;STR;VQSLOD=5.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:701,57,0 1 22050264 rs900488 C G 128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-0.409;SB=0.00;SOR=0.693;VQSLOD=9.88;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:157,0,169 1 22050649 rs2275668 C A 1399.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.703;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-0.661;SB=-5.260e+02;SOR=0.767;VQSLOD=8.26;culprit=FS GT:AD:DP:GQ:PL 0/1:46,51:97:99:1428,0,1297 1 22063149 rs10753517 G A 769.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.155;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.957;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-0.611;SB=-3.150e+02;SOR=0.867;VQSLOD=7.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,33:71:99:798,0,933 1 22082967 . CAA C 151.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.02;MQ0=0;MQRankSum=0.674;POSITIVE_TRAIN_SITE;QD=8.43;RPA=20,18;RU=A;ReadPosRankSum=-0.475;SB=0.00;SOR=0.693;STR;VQSLOD=3.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,9:18:99:189,0,173 1 22109370 rs10917042 G A 527.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.075;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.755;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=1.135;SB=-2.160e+02;SOR=1.236;VQSLOD=7.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,21:41:99:556,0,503 1 22139141 rs34297508 C T 1107.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.136;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=1.981;HaplotypeScore=2.7894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-0.671;SB=-3.300e+02;SOR=1.066;VQSLOD=7.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,42:84:99:1136,0,1272 1 22139300 rs71636988 G A 57.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.25;ReadPosRankSum=-1.184;SB=0.00;SOR=0.180;VQSLOD=9.09;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:86:86,0,271 1 22141206 rs10917051 A C 1592.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6203;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.18;SB=-7.140e+02;SOR=1.298;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1621,120,0 1 22149935 rs897467 T C 1946.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-8.740e+02;SOR=1.270;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1975,147,0 1 22150257 rs3736357 C T 1264.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-2.331e+02;SOR=3.145;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1293,99,0 1 22155723 rs7518070 T C 380.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=-1.255e+02;SOR=1.609;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:409,30,0 1 22157689 rs3736355 G A 1707.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.50;SB=-8.290e+02;SOR=1.009;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1736,135,0 1 22158363 rs4654771 G A 332.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-7.997e+01;SOR=2.494;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:361,27,0 1 22160148 rs7547731 C T 1101.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.43;SB=-4.300e+02;SOR=1.473;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:87:1130,87,0 1 22168216 rs7556412 C T 1097.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.27;SB=-4.960e+02;SOR=1.179;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:87:1126,87,0 1 22174600 rs3767138 A G 3507.77 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-1.551e+03;SOR=1.469;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,114:114:99:3536,256,0 1 22177119 rs61777200 A G 419.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=-3.577e+01;SOR=3.611;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:448,33,0 1 22179673 rs12049614 T C 596.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.75;SB=-4.276e+01;SOR=4.294;VQSLOD=5.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:625,51,0 1 22180244 rs72231639 A AAAAAT 239.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.356;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;RPA=9,10;RU=AAAAT;ReadPosRankSum=-0.064;SB=0.00;SOR=0.307;STR;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:9,5:14:99:277,0,508 1 22180548 rs12117402 T C 2000.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.50;SB=-9.770e+02;SOR=0.997;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:2029,150,0 1 22181878 rs147669915 G A 490.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.227;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.88;ReadPosRankSum=-0.306;SB=-2.190e+02;SOR=0.491;VQSLOD=8.37;culprit=FS GT:AD:DP:GQ:PL 0/1:8,18:26:99:519,0,176 1 22183471 rs12024579 A C 2040.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.40;SB=-8.390e+02;SOR=1.646;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2069,150,0 1 22183739 rs2305562 A G 4728.77 PASS AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-2.731e+03;SOR=0.789;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,151:151:99:4757,346,0 1 22186234 rs10917056 A G 1896.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-8.320e+02;SOR=1.140;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1925,144,0 1 22191454 rs897471 G A 1396.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.94;SB=-8.240e+02;SOR=0.952;VQSLOD=6.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1425,105,0 1 22199081 rs2501266 A T 332.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-1.881e+02;SOR=0.859;VQSLOD=5.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:361,27,0 1 22199245 . C T 233.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.13;ReadPosRankSum=1.778;SB=-4.600e+01;SOR=0.760;VQSLOD=7.96;culprit=FS GT:AD:DP:GQ:PL 0/1:12,9:21:99:262,0,350 1 22199821 rs2454290 G A 2719.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-7.220e+02;SOR=2.542;VQSLOD=7.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2748,205,0 1 22200067 rs2247741 A G 941.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.808;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=1.063;HaplotypeScore=2.8936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-0.276;SB=-2.720e+02;SOR=0.859;VQSLOD=7.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,35:66:99:970,0,892 1 22200082 rs2445136 T C 1514.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.13;SB=-5.640e+02;SOR=2.049;VQSLOD=5.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1543,120,0 1 22200126 rs2290495 A G 435.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.152;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=2.207;HaplotypeScore=2.8314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=-0.624;SB=-9.901e+01;SOR=0.223;VQSLOD=9.57;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,16:30:99:464,0,422 1 22200835 rs2445135 C G 311.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-1.125e+02;SOR=1.609;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:340,27,0 1 22201331 rs2290494 C T 1567.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=3.351;HaplotypeScore=1.5592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=1.649;SB=-5.110e+02;SOR=1.170;VQSLOD=5.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,53:81:99:1596,0,725 1 22202109 rs2501265 C T 942.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-1.971e+02;SOR=2.910;VQSLOD=5.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:971,72,0 1 22203259 rs2454295 A G 298.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.683;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.67;ReadPosRankSum=-0.380;SB=0.00;SOR=1.244;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:6,10:16:99:327,0,194 1 22204630 rs7513608 G A 175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.353;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=1.304;SB=0.00;SOR=0.495;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:9,7:16:99:204,0,312 1 22205408 rs2454294 T C 744.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-2.820e+02;SOR=1.230;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:773,60,0 1 22205466 rs2454293 T C 1395.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-7.497e+01;SOR=5.031;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1424,108,0 1 22206649 rs989994 T C 3453.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.26;SB=-1.980e+03;SOR=0.714;VQSLOD=4.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:3482,253,0 1 22206942 rs1874793 G A 2021.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-1.044e+03;SOR=1.022;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2050,150,0 1 22207235 rs1874792 T C 1212.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=-7.240e+02;SOR=0.850;VQSLOD=5.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:93:1241,93,0 1 22207804 rs139046040 ACCCAGGGTGGCAG A 4391.73 PASS AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.35;SB=-2.214e+03;SOR=0.693;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:34:84:4429,84,0 1 22208030 rs921847 C T 534.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-1.503e+02;SOR=2.179;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:563,42,0 1 22211217 rs2290493 G A 1552.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.722;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.759;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=1.457;SB=-6.990e+02;SOR=0.548;VQSLOD=8.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,53:106:99:1581,0,1372 1 22211222 rs4654994 T C 3518.77 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-1.395e+03;SOR=1.462;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,108:108:99:3547,268,0 1 22214127 rs2229478 A G 839.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.708;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=4.300;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=-0.482;SB=-3.290e+02;SOR=1.183;VQSLOD=6.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,33:82:99:868,0,1174 1 22214645 rs3767140 C A 169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=-2.609;SB=-4.076e+01;SOR=0.399;VQSLOD=8.72;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,7:11:99:198,0,136 1 22215088 rs2445140 T C 310.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.90;SB=-1.423e+02;SOR=1.445;VQSLOD=5.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:24:339,24,0 1 22216279 rs3767141 C T 1146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.360;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=1.867;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-0.167;SB=-4.260e+02;SOR=1.028;VQSLOD=8.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,44:88:99:1175,0,1163 1 22216574 rs2254358 C A 366.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.842;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=8.027;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=0.214;SB=-2.640e+02;SOR=0.101;VQSLOD=7.87;culprit=FS GT:AD:DP:GQ:PL 0/1:20,17:37:99:395,0,591 1 22216604 rs2254357 C G 360.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=4.117;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=-1.113;SB=-1.970e+02;SOR=0.169;VQSLOD=9.78;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,14:24:99:389,0,312 1 22217108 rs2501260 G A 2190.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-1.326e+03;SOR=0.807;VQSLOD=7.25;culprit=DP GT:AD:DP:GQ:PL 1/1:0,72:72:99:2219,163,0 1 22299656 rs4233282 T G 293.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.946;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.63;MQ0=0;MQRankSum=-2.413;POSITIVE_TRAIN_SITE;QD=7.53;ReadPosRankSum=1.327;SB=-6.000e+01;SOR=0.708;VQSLOD=2.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,11:39:99:322,0,784 1 22299966 rs4233283 C A 229.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=0.950;SB=0.00;SOR=0.976;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:258,0,201 1 22303702 rs4415533 C A 210.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.837;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=0.302;SB=-3.401e+01;SOR=0.818;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:13,9:22:99:239,0,381 1 22305012 . G A 302.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.661;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.900;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.96;MQ0=0;MQRankSum=0.000;QD=10.44;ReadPosRankSum=0.045;SB=-1.020e+02;SOR=0.275;VQSLOD=8.35;culprit=SOR GT:AD:DP:GQ:PL 0/1:18,11:29:99:331,0,538 1 22310080 rs10799723 G A 621.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.54;SB=0.00;SOR=5.892;VQSLOD=9.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:650,54,0 1 22310139 rs10733031 T G 1326.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.48;SB=-3.920e+02;SOR=2.461;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1355,105,0 1 22310145 rs10733032 C T 1459.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.06;SB=-4.700e+02;SOR=2.160;VQSLOD=5.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:48:99:1488,108,0 1 22310190 rs41266015 T C 1151.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.903;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=5.862;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=49.47;MQ0=0;MQRankSum=-1.179;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.261;SB=-5.020e+02;SOR=0.300;VQSLOD=0.090;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,46:93:99:1180,0,1295 1 22310262 rs10733033 G C 3753.77 PASS AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.81;SB=-2.328e+03;SOR=0.801;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,135:135:99:3782,280,0 1 22310411 rs28468423 A G 1552.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.76;SB=-3.690e+02;SOR=2.511;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1581,123,0 1 22310413 rs7549398 A G 1523.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.86;SB=-3.970e+02;SOR=2.461;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1552,117,0 1 22310662 rs6426735 G T 874.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.73;SB=-6.710e+02;SOR=0.693;VQSLOD=4.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:63:903,63,0 1 22310674 rs7538207 C T 862.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.14;SB=-5.980e+02;SOR=0.752;VQSLOD=5.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:63:891,63,0 1 22310725 . G C 706.77 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.18;SB=-3.590e+02;SOR=1.528;VQSLOD=4.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:57:735,57,0 1 22313161 rs1803530 T C 3777.77 PASS AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5769;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-8.090e+02;SOR=2.914;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,117:117:99:3806,301,0 1 22313197 rs34963341 C A 1187.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.466;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4501;MLEAC=1;MLEAF=0.500;MQ=55.84;MQ0=0;MQRankSum=-0.995;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=1.371;SB=-1.310e+02;SOR=0.452;VQSLOD=2.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,41:78:99:1216,0,1003 1 22313689 rs6426736 A T 538.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.56;SB=0.00;SOR=5.549;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:567,45,0 1 22324705 rs7534936 T C 4006.77 PASS AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7520;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.42;SB=-2.615e+03;SOR=0.892;VQSLOD=5.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,141:141:99:4035,298,0 1 22327961 . C G 184.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.58;MQ0=0;MQRankSum=-1.550;QD=16.80;ReadPosRankSum=0.172;SB=0.00;SOR=0.859;VQSLOD=1.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,6:11:99:213,0,172 1 22327990 rs61685243 C A 252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.053;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.88;MQ0=0;MQRankSum=-2.003;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=0.071;SB=-7.697e+01;SOR=0.088;VQSLOD=0.026;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,11:21:99:281,0,351 1 22328092 . A G 483.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.767;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=16.7919;MLEAC=1;MLEAF=0.500;MQ=54.63;MQ0=0;MQRankSum=-5.982;QD=8.49;ReadPosRankSum=-1.137;SB=-1.510e+02;SOR=0.765;VQSLOD=0.118;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,20:57:99:512,0,926 1 22328279 rs12751986 C T 628.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.383;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.67;MQ0=0;MQRankSum=2.771;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=-0.110;SB=-1.870e+02;SOR=0.811;VQSLOD=3.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,25:55:99:657,0,804 1 22329407 rs12756442 G C 837.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=33.51;SB=-3.570e+02;SOR=1.358;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:63:866,63,0 1 22329645 rs4543768 T C 358.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=-1.603e+02;SOR=1.445;VQSLOD=4.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:387,30,0 1 22336120 rs4344303 T C 1013.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.533;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4641;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=-0.805;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=0.877;SB=-2.260e+02;SOR=0.527;VQSLOD=2.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,34:58:99:1042,0,627 1 22336277 rs3820285 C G 3945.77 PASS AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.23;SB=-2.225e+03;SOR=1.049;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,135:135:99:3974,283,0 1 22336305 rs9187 C T 1306.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.529;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.80;MQ0=0;MQRankSum=-0.013;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-0.145;SB=-5.830e+02;SOR=0.668;VQSLOD=2.25;culprit=FS GT:AD:DP:GQ:PL 0/1:55,54:110:99:1335,0,1444 1 22336308 rs12908 G A 1339.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.779;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.79;MQ0=0;MQRankSum=-0.014;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=-0.657;SB=-5.240e+02;SOR=0.752;VQSLOD=1.43;culprit=FS GT:AD:DP:GQ:PL 0/1:53,52:105:99:1368,0,1343 1 22336371 rs3806297 C A 927.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.733;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=57.22;MQ0=0;MQRankSum=0.593;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=1.266;SB=-1.230e+02;SOR=0.919;VQSLOD=3.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,31:57:99:956,0,672 1 22408106 rs2501282 G A 2657.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-1.445e+03;SOR=1.065;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2686,196,0 1 22447148 rs12756110 G C 450.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.20;SB=-4.176e+01;SOR=3.912;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:479,39,0 1 22447645 rs67503051 C CTG 1781.73 PASS AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.87;RPA=1,2;RU=TG;SB=-1.625e+02;SOR=4.174;STR;VQSLOD=5.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:99:1819,102,0 1 22592949 rs76727629 A G 85.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.848;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.36;ReadPosRankSum=-0.182;SB=-1.765e+00;SOR=0.527;VQSLOD=9.18;culprit=QD GT:AD:DP:GQ:PL 0/1:12,4:16:99:114,0,402 1 22816262 rs1267005 T C 496.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-8.197e+01;SOR=3.126;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:525,39,0 1 22832743 rs209732 A T 946.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.65;SB=-1.145e+02;SOR=3.841;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:78:975,78,0 1 22834693 rs28516648 A C 687.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.913;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.93;ReadPosRankSum=1.361;SB=-1.420e+02;SOR=0.643;VQSLOD=8.91;culprit=FS GT:AD:DP:GQ:PL 0/1:8,22:30:99:716,0,181 1 22835677 rs209729 A G 2252.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.44;SB=-1.024e+03;SOR=1.457;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2281,163,0 1 22837586 . CT C 487.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=0;MQRankSum=1.473;POSITIVE_TRAIN_SITE;QD=11.34;RPA=17,16;RU=T;ReadPosRankSum=1.007;SB=-8.601e+01;SOR=0.838;STR;VQSLOD=3.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,31:44:99:525,0,188 1 22846709 rs209720 G A 2672.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SB=-9.770e+02;SOR=1.954;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2701,202,0 1 22849003 rs998978 A C 1224.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-1.971e+02;SOR=3.321;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:90:1253,90,0 1 22852715 rs881646 G C 2876.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.66;SB=-1.652e+03;SOR=0.845;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:2905,217,0 1 22915753 rs606002 T C 2123.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=3.821;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=-0.058;SB=-9.810e+02;SOR=1.042;VQSLOD=7.50;culprit=DP GT:AD:DP:GQ:PL 0/1:76,78:154:99:2152,0,1929 1 22915978 rs521570 A T 600.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.233;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.834;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-1.485;SB=-1.610e+02;SOR=1.259;VQSLOD=7.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,22:46:99:629,0,573 1 22919904 rs209696 C T 1134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=2.618;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.687;SB=-4.310e+02;SOR=0.964;VQSLOD=7.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,43:104:99:1163,0,1696 1 22922546 rs209692 G A 147.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.583;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=2.7605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-0.058;SB=-5.600e+01;SOR=1.609;VQSLOD=6.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,7:15:99:176,0,180 1 22922560 rs209691 G A 193.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=0.409;SB=-1.330e+02;SOR=0.859;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:222,0,214 1 22924418 rs12030727 T C 1236.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.026;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=1.389;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.67;ReadPosRankSum=0.501;SB=-2.150e+02;SOR=0.458;VQSLOD=9.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,41:70:99:1265,0,885 1 22924536 rs66665740 GT G 407.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQ0=0;MQRankSum=2.121;POSITIVE_TRAIN_SITE;QD=12.36;RPA=3,2;RU=T;ReadPosRankSum=-0.365;SB=-1.010e+02;SOR=0.892;STR;VQSLOD=3.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,14:33:99:445,0,611 1 22924783 rs11586741 C T 590.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.642;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=1.314;SB=-3.570e+02;SOR=0.235;VQSLOD=9.99;culprit=FS GT:AD:DP:GQ:PL 0/1:18,26:44:99:619,0,463 1 22925292 rs664340 C G 2804.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.52;SB=-1.020e+03;SOR=2.135;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:2833,220,0 1 22925613 rs663002 C A 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.259;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=-0.172;SB=0.00;SOR=0.693;VQSLOD=10.48;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:295,0,313 1 22927314 rs209702 A G 944.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.783;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=0.495;SB=-3.050e+02;SOR=0.662;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:25,31:56:99:973,0,725 1 22927326 rs209701 T G 937.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.703;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=0.830;SB=-3.100e+02;SOR=0.892;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:28,32:60:99:966,0,751 1 22928265 rs209700 A G 378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.696;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=1.266;SB=-1.550e+02;SOR=0.233;VQSLOD=9.63;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,14:29:99:407,0,415 1 22928349 rs209699 A G 252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=4.150;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.44;ReadPosRankSum=1.918;SB=-1.765e+00;SOR=2.636;VQSLOD=5.34;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,8:13:99:281,0,126 1 22965438 rs172378 A G 1108.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.847;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=7.302;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=0.784;SB=-5.510e+02;SOR=0.269;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 0/1:52,42:94:99:1137,0,1578 1 22970828 rs666656 G T 296.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-1.503e+02;SOR=1.085;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:325,24,0 1 22974297 rs9434 C A 152.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.291;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=0.803;SB=-4.076e+01;SOR=0.086;VQSLOD=9.28;culprit=SOR GT:AD:DP:GQ:PL 0/1:9,6:15:99:181,0,312 1 22985839 rs140338008 AGATG A,AGATGGATG 1134.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;RPA=12,11,13;RU=GATG;SB=-3.560e+02;SOR=1.721;STR;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/2:0,9,11:23:99:1172,684,1127,548,0,848 1 22987958 rs10580 A G 2064.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.85;SB=-7.370e+02;SOR=1.850;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:2093,150,0 1 23045943 rs2869513 A G 2918.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-1.520e+03;SOR=0.992;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:2947,214,0 1 23101688 rs1561624 T G 979.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.360;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.944;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=-1.134;SB=-3.010e+02;SOR=0.951;VQSLOD=7.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,34:81:99:1008,0,1305 1 23107832 rs3738296 A G 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.957;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.6155;MLEAC=1;MLEAF=0.500;MQ=60.24;MQ0=0;MQRankSum=-0.660;POSITIVE_TRAIN_SITE;QD=7.71;ReadPosRankSum=-0.169;SB=-8.400e+01;SOR=0.373;VQSLOD=3.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,15:45:99:375,0,775 1 23108089 rs2817904 A G 180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-0.125;SB=-2.601e+01;SOR=0.693;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:209,0,191 1 23216712 rs309474 T C 1996.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-1.178e+03;SOR=0.693;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2025,153,0 1 23219187 rs116119 C T 1137.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=-1.205e+02;SOR=3.611;VQSLOD=7.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:87:1166,87,0 1 23219493 rs309472 T C 5008.77 PASS AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.39;SB=-2.863e+03;SOR=0.834;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,150:151:99:5037,361,0 1 23223116 rs309466 C T 1259.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.30;SB=-4.720e+02;SOR=1.954;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1288,99,0 1 23232400 rs309502 C T 1185.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-1.841e+02;SOR=3.442;VQSLOD=7.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:93:1214,93,0 1 23236826 rs309497 C T 3411.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.19;SB=-1.577e+03;SOR=1.244;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3440,259,0 1 23291582 rs4655138 G A 379.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.949;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.026;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=0.035;SB=-2.501e+01;SOR=1.449;VQSLOD=7.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,13:34:99:408,0,557 1 23342193 rs10917344 C G 497.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.212;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.047;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=1.268;SB=-9.732e-01;SOR=1.999;VQSLOD=5.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,15:35:99:526,0,601 1 23342362 rs681648 A G 2454.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;SB=-1.271e+03;SOR=1.193;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2483,181,0 1 23380198 rs579785 A G 909.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.37;SB=-7.997e+01;SOR=4.174;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:938,69,0 1 23381795 rs33996438 A AT 625.73 PASS AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=0.00;SOR=5.421;VQSLOD=8.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:663,42,0 1 23382729 rs763310 A G 435.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.04;SB=0.00;SOR=5.136;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:464,36,0 1 23385826 rs79588010 CTT C 1097.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.009;DB;DP=54;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.71;ReadPosRankSum=0.135;SB=-3.950e+02;SOR=0.908;VQSLOD=5.45;culprit=QD GT:AD:DP:GQ:PL 0/1:30,23:54:99:1135,0,1572 1 23399824 rs75011666 T C 885.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.491;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=6.832;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-0.639;SB=-5.040e+02;SOR=0.465;VQSLOD=5.62;culprit=FS GT:AD:DP:GQ:PL 0/1:31,32:63:99:914,0,766 1 23399932 rs967605 C T 1441.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;SB=-4.850e+02;SOR=2.030;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1470,108,0 1 23405794 rs2072945 A C 1996.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-1.185e+03;SOR=0.886;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2025,153,0 1 23405872 rs2072944 T C 652.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.017;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-0.086;SB=-3.580e+02;SOR=0.502;VQSLOD=9.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,25:58:99:681,0,962 1 23408923 . A AT 89.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;DP=30;ExcessHet=3.0103;FS=2.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.74;RPA=16,17;RU=T;ReadPosRankSum=0.950;SB=-4.401e+01;SOR=0.197;STR;VQSLOD=6.28;culprit=QD GT:AD:DP:GQ:PL 0/1:16,8:30:99:127,0,274 1 23409538 rs2235546 G A 465.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.946;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.736;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=1.196;SB=-1.765e+00;SOR=2.998;VQSLOD=6.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,15:27:99:494,0,292 1 23418153 rs10799790 C T 6729.77 PASS AC=2;AF=1.00;AN=2;DB;DP=217;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4810;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.01;SB=-3.924e+03;SOR=0.840;VQSLOD=5.54;culprit=DP GT:AD:DP:GQ:PL 1/1:0,217:217:99:6758,500,0 1 23419261 rs477717 G A 5427.77 PASS AC=2;AF=1.00;AN=2;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-2.476e+03;SOR=1.352;VQSLOD=6.72;culprit=DP GT:AD:DP:GQ:PL 1/1:0,173:173:99:5456,418,0 1 23419374 rs3765407 G T 3174.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-1.904e+03;SOR=0.713;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:3203,238,0 1 23419383 rs477830 C T 3139.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=-1.941e+03;SOR=0.713;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:3168,232,0 1 23419855 rs1983965 T C 1318.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.06;SB=-7.870e+02;SOR=0.735;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1347,102,0 1 23688933 rs2849028 A G 2051.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.308;DB;DP=198;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=0.601;SB=-1.354e+03;SOR=0.742;VQSLOD=6.60;culprit=DP GT:AD:DP:GQ:PL 0/1:116,82:198:99:2080,0,3163 1 23693385 rs618237 T C 525.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.222;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.345;HaplotypeScore=2.7774;MLEAC=1;MLEAF=0.500;MQ=59.80;MQ0=0;MQRankSum=-0.927;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=-0.117;SB=-1.680e+02;SOR=1.011;VQSLOD=0.079;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,21:41:99:554,0,508 1 23693422 rs2849025 T C 893.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.867;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.368;HaplotypeScore=7.3956;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=1.115;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=-0.090;SB=-3.990e+02;SOR=0.395;VQSLOD=0.600;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,34:64:99:922,0,767 1 23694639 rs683204 G A 70.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.480;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.93;ReadPosRankSum=0.791;SB=0.00;SOR=0.169;VQSLOD=8.87;culprit=QD GT:AD:DP:GQ:PL 0/1:13,5:18:99:99,0,483 1 23696152 rs665977 G A 2597.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=-1.212e+03;SOR=1.481;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2626,193,0 1 23697617 rs638722 T C 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=4.117;HaplotypeScore=18.3264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=-0.264;SB=-1.740e+02;SOR=0.169;VQSLOD=10.34;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,14:26:99:309,0,228 1 23710805 rs605468 A G 2126.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-1.193e+03;SOR=1.054;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2155,154,0 1 23713952 rs676363 T G 816.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-4.490e+02;SOR=1.022;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:60:845,60,0 1 23720260 rs2486078 T G 550.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.42;SB=-8.097e+01;SOR=3.258;VQSLOD=7.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:579,42,0 1 23724183 rs2275355 C T 476.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.922;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=6.548;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=1.467;SB=-3.590e+02;SOR=0.353;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 0/1:19,23:42:99:505,0,583 1 23735241 rs1198423 G T 2303.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.09;SB=-1.304e+03;SOR=1.022;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2332,169,0 1 23743581 rs2156087 C G 1346.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-4.370e+02;SOR=2.147;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1375,99,0 1 23751140 rs71514235 G T 187.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.16;ReadPosRankSum=-2.248;SB=-1.690e+02;SOR=0.859;VQSLOD=8.60;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:12,11:23:99:216,0,263 1 23755513 rs1198430 T C 916.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.65;SB=-4.750e+02;SOR=1.284;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:72:945,72,0 1 23756695 rs1198433 A G 470.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-1.145e+02;SOR=2.303;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:499,36,0 1 23758134 rs1198434 A G 2302.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;SB=-1.272e+03;SOR=1.051;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2331,169,0 1 23760408 rs1207124 A G 464.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=0.00;SOR=5.136;VQSLOD=7.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:493,36,0 1 23762679 rs12401753 A G 454.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=-4.076e+01;SOR=3.767;VQSLOD=7.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:483,36,0 1 23765472 rs1767148 A G 758.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-2.780e+02;SOR=1.802;VQSLOD=4.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:57:787,57,0 1 23769359 rs946269 T C 319.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.65;SB=-1.523e+02;SOR=1.445;VQSLOD=5.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:348,27,0 1 23782297 rs61778880 C T 401.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.183;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=0.900;SB=0.00;SOR=0.963;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:10,13:23:99:430,0,336 1 23782775 rs12567669 C G 738.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.12;ReadPosRankSum=-0.329;SB=-3.800e+02;SOR=0.725;VQSLOD=8.51;culprit=FS GT:AD:DP:GQ:PL 0/1:42,31:73:99:767,0,1023 1 23836364 rs2075993 A G 579.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.893;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=3.829;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.50;ReadPosRankSum=-0.738;SB=-3.800e+02;SOR=0.307;VQSLOD=9.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,28:61:99:608,0,930 1 23847464 rs2075995 C A 984.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.294;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.231;SB=-5.200e+02;SOR=0.794;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 0/1:40,40:80:99:1013,0,982 1 23847709 rs2075996 C G 442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.601;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-1.235;SB=-2.050e+02;SOR=0.538;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 0/1:14,18:32:99:471,0,406 1 23885498 rs11574 T C 4535.77 PASS AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.40;SB=-2.283e+03;SOR=1.171;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,140:140:99:4564,349,0 1 23908221 . C CT 117.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.36;RPA=22,23;RU=T;ReadPosRankSum=2.615;SB=0.00;SOR=1.609;STR;VQSLOD=7.01;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,11:30:43:155,0,43 1 23956161 . AAAT A 163.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQ0=0;MQRankSum=0.366;QD=23.39;RPA=17,16;RU=AAT;ReadPosRankSum=1.465;SB=0.00;SOR=1.609;STR;VQSLOD=0.989;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,5:20:80:201,0,80 1 24018277 rs10917413 C G 2354.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-1.469e+03;SOR=0.772;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2383,172,0 1 24022437 rs2280437 A G 4128.77 PASS AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9048;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-2.610e+03;SOR=0.784;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,136:136:99:4157,301,0 1 24077451 rs2235541 C T 785.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=7.023;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=1.161;SB=-4.340e+02;SOR=0.444;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 0/1:30,30:60:99:814,0,811 1 24083649 rs2076346 T C 775.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.071;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-1.071;SB=-4.580e+02;SOR=0.598;VQSLOD=9.92;culprit=FS GT:AD:DP:GQ:PL 0/1:28,31:61:99:804,0,752 1 24106510 . A AT 289.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQ0=0;MQRankSum=1.559;POSITIVE_TRAIN_SITE;QD=6.30;RPA=4,5;RU=T;ReadPosRankSum=0.334;SB=-7.400e+01;SOR=0.616;STR;VQSLOD=3.06;culprit=QD GT:AD:DP:GQ:PL 0/1:32,14:49:99:327,0,883 1 24121601 rs1063433 C T 213.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.920;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=-1.448;SB=-2.701e+01;SOR=2.303;VQSLOD=5.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,8:13:92:242,0,92 1 24122986 rs760941 C T 132.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=1.047;SB=0.00;SOR=2.584;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:98:161,0,98 1 24133612 rs1018396 G A 1437.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=0.457;SB=-8.600e+02;SOR=0.648;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:41,52:93:99:1466,0,1070 1 24134462 rs719399 C T 281.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.967;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=-2.629;SB=-4.176e+01;SOR=0.191;VQSLOD=9.25;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:11,11:22:99:310,0,386 1 24134721 rs719400 T C 2475.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.838;DB;DP=201;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-0.341;SB=-1.436e+03;SOR=0.722;VQSLOD=7.02;culprit=DP GT:AD:DP:GQ:PL 0/1:113,88:201:99:2504,0,2984 1 24143932 rs2076344 A G 487.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.553;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.71;ReadPosRankSum=-0.176;SB=-3.120e+02;SOR=0.751;VQSLOD=8.82;culprit=QD GT:AD:DP:GQ:PL 0/1:34,22:56:99:516,0,844 1 24151996 rs6697805 C A 740.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.601;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=10.414;HaplotypeScore=5.2027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=-0.202;SB=-5.150e-01;SOR=3.845;VQSLOD=5.23;culprit=FS GT:AD:DP:GQ:PL 0/1:20,22:42:99:769,0,540 1 24172765 . C CT 92.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.73;RPA=14,15;RU=T;ReadPosRankSum=0.315;SB=0.00;SOR=1.022;STR;VQSLOD=7.93;culprit=QD GT:AD:DP:GQ:PL 0/1:5,7:19:82:130,0,82 1 24180806 rs55699941 TA T 189.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQ0=0;MQRankSum=1.471;POSITIVE_TRAIN_SITE;QD=5.27;RPA=13,12;RU=A;ReadPosRankSum=0.390;SB=-3.600e+01;SOR=0.833;STR;VQSLOD=2.48;culprit=QD GT:AD:DP:GQ:PL 0/1:22,14:37:99:227,0,430 1 24192200 rs34902309 A G 783.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.481;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=-0.046;SB=-4.670e+02;SOR=0.346;VQSLOD=10.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,30:52:99:812,0,666 1 24192379 rs74937660 G C 287.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.698;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=-1.067;SB=-1.765e+00;SOR=2.147;VQSLOD=5.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,10:18:99:316,0,232 1 24194748 rs2070956 G C 544.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.138;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.539;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=-0.048;SB=-1.240e+02;SOR=1.580;VQSLOD=6.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,21:36:99:573,0,365 1 24194773 rs2070955 G A 464.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.548;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=0.844;SB=-4.176e+01;SOR=0.425;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:10,16:26:99:493,0,329 1 24194788 rs2070954 A G 455.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.708;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.72;ReadPosRankSum=1.236;SB=-3.876e+01;SOR=0.631;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 0/1:7,15:23:99:484,0,211 1 24200800 rs1105 T C 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-0.159;SB=0.00;SOR=1.022;VQSLOD=9.98;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:202,0,167 1 24200903 rs2229586 G C 750.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.346;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=16.435;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-0.099;SB=-4.000e+02;SOR=0.068;VQSLOD=4.44;culprit=FS GT:AD:DP:GQ:PL 0/1:30,32:62:99:779,0,942 1 24200921 rs2229585 T C 960.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.899;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=6.950;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=0.930;SB=-4.560e+02;SOR=0.225;VQSLOD=8.24;culprit=FS GT:AD:DP:GQ:PL 0/1:39,37:76:99:989,0,1103 1 24200969 rs2229584 T C 1440.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=1.620;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.710;SB=-5.890e+02;SOR=1.140;VQSLOD=6.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,51:112:99:1469,0,1554 1 24200983 rs2229583 C T 1528.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.200;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-0.621;SB=-8.090e+02;SOR=0.758;VQSLOD=8.44;culprit=FS GT:AD:DP:GQ:PL 0/1:67,60:127:99:1557,0,1778 1 24201094 rs2229581 G C 2271.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;DB;DP=183;Dels=0.00;ExcessHet=3.0103;FS=1.165;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=0.418;SB=-1.101e+03;SOR=0.581;VQSLOD=7.10;culprit=DP GT:AD:DP:GQ:PL 0/1:96,87:183:99:2300,0,2675 1 24201109 rs2229580 C T 2440.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.880;DB;DP=189;Dels=0.00;ExcessHet=3.0103;FS=0.544;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=0.992;SB=-1.225e+03;SOR=0.621;VQSLOD=7.03;culprit=DP GT:AD:DP:GQ:PL 0/1:102,86:189:99:2469,0,2851 1 24201162 rs2229579 G A 3046.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-12.375;DB;DP=240;Dels=0.00;ExcessHet=3.0103;FS=2.907;HaplotypeScore=2.5929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=1.053;SB=-1.778e+03;SOR=0.994;VQSLOD=5.54;culprit=DP GT:AD:DP:GQ:PL 0/1:111,129:240:99:3075,0,2903 1 24201262 rs2502993 A G 3008.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.272;DB;DP=248;Dels=0.00;ExcessHet=3.0103;FS=2.138;HaplotypeScore=4.4818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-0.193;SB=-1.877e+03;SOR=0.569;VQSLOD=6.78;culprit=DP GT:AD:DP:GQ:PL 0/1:135,113:248:99:3037,0,3708 1 24201357 rs4649124 A G 2281.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.252;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=7.409;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=0.083;SB=-1.021e+03;SOR=0.342;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 0/1:83,74:157:99:2310,0,2402 1 24201448 rs3003336 C T 1841.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.735;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=1.384;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=0.326;SB=-1.025e+03;SOR=0.876;VQSLOD=7.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,68:132:99:1870,0,1810 1 24201643 rs2501431 G A 1185.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.244;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-0.186;SB=-7.280e+02;SOR=0.662;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:50,49:99:99:1214,0,1387 1 24201919 rs2502992 T C 2375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.580;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=2.859;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-0.128;SB=-1.237e+03;SOR=0.464;VQSLOD=7.25;culprit=DP GT:AD:DP:GQ:PL 0/1:77,79:156:99:2404,0,2041 1 24201920 rs2501432 T C 2244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.306;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=2.859;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=-0.133;SB=-1.116e+03;SOR=0.464;VQSLOD=7.24;culprit=DP GT:AD:DP:GQ:PL 0/1:77,79:156:99:2273,0,2169 1 24227934 . C T 552.77 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.71;SB=-3.590e+02;SOR=0.693;VQSLOD=5.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:42:581,42,0 1 24228108 rs4649133 G A 1380.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-6.960e+02;SOR=1.203;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1409,102,0 1 24228132 rs4649134 G A 1605.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-7.830e+02;SOR=1.244;VQSLOD=5.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1634,120,0 1 24228206 rs4649135 A G 1986.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=-1.124e+03;SOR=0.957;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2015,144,0 1 24228359 rs4649136 A G 1517.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.76;SB=-6.580e+02;SOR=1.436;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1546,114,0 1 24228408 rs4648921 C T 1179.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-4.550e+02;SOR=1.730;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:90:1208,90,0 1 24228419 rs4648922 T C 991.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.17;SB=-4.060e+02;SOR=1.819;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:78:1020,78,0 1 24228443 rs4648923 G A 748.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.56;SB=-2.341e+02;SOR=2.030;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:777,57,0 1 24228594 rs6669546 C G 341.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-1.155e+02;SOR=1.802;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:370,27,0 1 24228710 rs56319936 TCCCGAGTGACAA T 2655.73 PASS AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.54;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-1.245e+03;SOR=0.914;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:20:54:2693,54,0 1 24228762 rs6662481 G C 662.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.93;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.82;SB=-4.050e+02;SOR=0.963;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:51:691,51,0 1 24228863 rs6662584 G A 391.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.78;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.65;SB=-1.175e+02;SOR=1.981;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:420,33,0 1 24229032 rs6672272 C A 992.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SB=-2.790e+02;SOR=2.303;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:75:1021,75,0 1 24229106 rs6677264 A G 1733.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.39;SB=-1.070e+03;SOR=0.950;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1762,126,0 1 24229276 rs6680554 T C 811.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.22;SB=-1.553e+02;SOR=3.098;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:66:840,66,0 1 24255844 . C CTAT 428.74 PASS AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.72;RPA=9,10;RU=TAT;SB=0.00;SOR=4.615;STR;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,9:14:27:466,27,0 1 24287780 rs148750403 GCTT G 725.73 PASS AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.15;SB=-3.341e+02;SOR=1.022;VQSLOD=5.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:13:36:763,36,0 1 24294249 rs146630384 C T 2524.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.42;SB=-1.126e+03;SOR=1.473;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2553,187,0 1 24294362 rs145308205 A T 2828.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1385;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=30.75;SB=-1.753e+03;SOR=0.737;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,92:92:99:2857,214,0 1 24294627 rs115208097 C T 886.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.71;SB=-3.820e+02;SOR=1.681;VQSLOD=4.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:66:915,66,0 1 24298263 rs116679590 T C 1391.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.93;SB=-4.730e+02;SOR=2.059;VQSLOD=4.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1420,105,0 1 24301685 rs114213119 C A 1366.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.71;SB=-5.110e+02;SOR=1.931;VQSLOD=4.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1395,105,0 1 24301721 rs145233262 T C 929.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.60;SB=-3.777e+01;SOR=5.058;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:72:958,72,0 1 24383819 rs7540491 T C 1677.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.07;SB=-1.245e+02;SOR=4.664;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1706,126,0 1 24387822 rs7553075 T A 1798.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.49;SB=-9.460e+02;SOR=1.197;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1827,132,0 1 24388371 rs4649168 T C 2556.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-8.700e+02;SOR=1.882;VQSLOD=7.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2585,190,0 1 24388417 rs11811060 A G 1634.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.242;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=4.510;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.403;SB=-5.630e+02;SOR=1.216;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 0/1:73,60:133:99:1663,0,1927 1 24388679 rs3795303 T C 1083.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.043;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=5.491;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=-1.275;SB=-2.190e+02;SOR=1.519;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 0/1:37,40:77:99:1112,0,997 1 24389509 rs67138023 GAA G 1214.73 PASS AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.43;RPA=3,1;RU=A;SB=-1.170e+02;SOR=4.003;STR;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:1252,69,0 1 24390717 rs41268127 G A 691.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.855;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.60;ReadPosRankSum=0.843;SB=-2.670e+02;SOR=0.713;VQSLOD=7.54;culprit=QD GT:AD:DP:GQ:PL 0/1:62,29:91:99:720,0,1588 1 24390738 rs146995432 G A 1281.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.722;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.785;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.80;ReadPosRankSum=1.142;SB=-3.890e+02;SOR=1.296;VQSLOD=6.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,47:72:99:1310,0,597 1 24392600 rs6682222 G A 437.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.644;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.767;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=-0.365;SB=-1.080e+02;SOR=1.148;VQSLOD=7.41;culprit=QD GT:AD:DP:GQ:PL 0/1:30,17:47:99:466,0,864 1 24392671 rs6699525 T C 233.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.54;ReadPosRankSum=0.124;SB=-1.550e+02;SOR=0.502;VQSLOD=9.93;culprit=QD GT:AD:DP:GQ:PL 0/1:20,11:31:99:262,0,511 1 24393563 rs16829071 C T 793.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.059;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=6.644;HaplotypeScore=7.5720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.42;ReadPosRankSum=-0.406;SB=-5.240e+02;SOR=0.384;VQSLOD=6.89;culprit=QD GT:AD:DP:GQ:PL 0/1:70,37:107:99:822,0,1921 1 24393729 rs11249090 G A 390.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.672;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=-1.276;POSITIVE_TRAIN_SITE;QD=8.88;ReadPosRankSum=1.611;SB=-3.400e+01;SOR=0.120;VQSLOD=2.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,16:44:99:419,0,918 1 24393777 rs191390261 T C 214.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.43;MQ0=0;MQRankSum=-0.674;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=-0.205;SB=0.00;SOR=0.693;VQSLOD=3.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,8:16:99:243,0,248 1 24394424 rs7542151 G A 1221.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.867;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=9.840;HaplotypeScore=2.6566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-1.074;SB=-6.460e+02;SOR=0.203;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 0/1:63,52:115:99:1250,0,1843 1 24394673 rs12125641 C T 339.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.273;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.606;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-0.372;SB=-1.330e+02;SOR=0.392;VQSLOD=9.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,12:28:99:368,0,507 1 24395003 rs6660675 T G 201.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.81;ReadPosRankSum=-0.312;SB=0.00;SOR=1.022;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:230,0,157 1 24398634 rs59491286 G A 679.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.436;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.010;SB=-3.300e+01;SOR=0.540;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:26,22:48:99:708,0,877 1 24400584 rs6660949 G C 2954.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=-6.860e+02;SOR=2.706;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2983,217,0 1 24400633 rs10903083 C G 3830.77 PASS AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8663;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.38;SB=-2.163e+03;SOR=1.129;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,135:135:99:3859,280,0 1 24406647 rs4649175 G A 2497.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;DB;DP=194;Dels=0.00;ExcessHet=3.0103;FS=1.189;HaplotypeScore=6.7836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=0.595;SB=-9.410e+02;SOR=0.822;VQSLOD=7.65;culprit=DP GT:AD:DP:GQ:PL 0/1:99,95:194:99:2526,0,2564 1 24407903 rs12082295 C T 560.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.493;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.083;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=-0.390;SB=-3.110e+02;SOR=0.822;VQSLOD=6.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,22:51:99:589,0,708 1 24408015 rs10903090 C G 428.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.503;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.826;HaplotypeScore=2.9151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=-0.437;SB=-1.400e+02;SOR=0.307;VQSLOD=9.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,16:31:99:457,0,382 1 24408765 rs4333801 T C 141.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=-1.456;SB=-6.300e+01;SOR=0.693;VQSLOD=10.00;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:170,0,196 1 24410751 rs10903093 T C 805.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.231;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=3.667;HaplotypeScore=2.7865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-0.491;SB=-3.920e+02;SOR=0.917;VQSLOD=6.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,31:59:99:834,0,699 1 24413159 rs6424152 T C 1598.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.487;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=4.645;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-0.634;SB=-1.049e+03;SOR=0.368;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:52,62:114:99:1627,0,1300 1 24413427 rs6686608 T G 204.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.281;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-1.319;SB=0.00;SOR=0.425;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:233,0,246 1 24416059 rs4393101 T C 1968.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.54;SB=-5.550e+02;SOR=2.262;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1997,147,0 1 24416070 rs7533060 G C 2308.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.46;SB=-6.530e+02;SOR=2.139;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2337,172,0 1 24417415 rs6700245 T C 1821.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.047;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=3.407;HaplotypeScore=5.4984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-1.176;SB=-8.200e+02;SOR=0.432;VQSLOD=8.39;culprit=DP GT:AD:DP:GQ:PL 0/1:68,73:141:99:1850,0,1890 1 24434595 rs11249170 T C 3461.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.712;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.85;ReadPosRankSum=-0.621;SB=-2.061e+03;SOR=0.345;VQSLOD=5.51;culprit=FS GT:AD:DP:GQ:PL 1/1:1,119:120:99:3490,213,0 1 24447116 rs3795302 C T 899.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.61;SB=0.00;SOR=6.593;VQSLOD=8.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:75:928,75,0 1 24447214 rs3795300 G A 2723.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4603;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.04;SB=-1.092e+03;SOR=1.609;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2752,205,0 1 24447468 rs3795299 G C 2541.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=-1.515e+03;SOR=0.739;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2570,193,0 1 24465113 rs10903022 C T 4183.77 PASS AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=-2.565e+03;SOR=0.722;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,138:138:99:4212,310,0 1 24465309 rs10794642 C T 504.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.65;SB=-3.976e+01;SOR=4.047;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:533,42,0 1 24484441 rs946671 A G 1847.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.80;SB=-1.015e+03;SOR=0.899;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1876,138,0 1 24485518 rs10751769 T C 1508.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-3.430e+02;SOR=2.560;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1537,114,0 1 24485813 rs4649194 T C 642.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.83;SB=-2.391e+02;SOR=1.292;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:671,54,0 1 24485941 rs4649195 T C 2526.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.44;SB=-9.920e+02;SOR=1.911;VQSLOD=7.84;culprit=DP GT:AD:DP:GQ:PL 1/1:0,83:83:99:2555,187,0 1 24486216 rs34545094 GT G 301.74 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.048;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.75;RPA=10,9;RU=T;ReadPosRankSum=2.319;SB=-3.377e+01;SOR=1.981;STR;VQSLOD=7.71;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:2,15:24:0:336,0,0 1 24487760 rs7552000 T C 801.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.07;SB=-2.221e+02;SOR=2.215;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:830,60,0 1 24495722 rs4649197 G A 81.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.18;ReadPosRankSum=-1.465;SB=0.00;SOR=0.412;VQSLOD=9.87;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:99:110,0,217 1 24513768 rs4090311 G A 459.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.770;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6590;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.74;ReadPosRankSum=1.737;SB=-2.201e+02;SOR=0.829;VQSLOD=7.86;culprit=FS GT:AD:DP:GQ:PL 1/1:1,15:17:39:488,39,0 1 24663965 rs11809452 G A 166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.455;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-1.260;SB=-9.732e-01;SOR=2.925;VQSLOD=5.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,6:12:99:195,0,138 1 24671287 rs4648859 C T 67.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.192;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.52;ReadPosRankSum=0.000;SB=-6.100e+01;SOR=0.646;VQSLOD=9.50;culprit=QD GT:AD:DP:GQ:PL 0/1:10,5:15:96:96,0,299 1 24673866 rs6691722 A G 1022.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.311;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=5.927;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=0.311;SB=-3.670e+02;SOR=0.223;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:40,42:82:99:1051,0,1194 1 24680915 rs12030057 C T 733.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.104;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=1.081;SB=-3.910e+02;SOR=0.934;VQSLOD=7.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,30:63:99:762,0,878 1 24684101 rs56095151 C T 708.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=1.252;SB=-3.460e+02;SOR=0.765;VQSLOD=8.30;culprit=FS GT:AD:DP:GQ:PL 0/1:34,28:62:99:737,0,931 1 24687653 rs532147 T C 154.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=0.087;SB=0.00;SOR=0.859;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:183,0,166 1 24690414 rs542969 A G 209.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.749;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-1.678;SB=0.00;SOR=0.693;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:238,0,259 1 24690764 rs545809 T A 1497.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.254;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.493;SB=-7.560e+02;SOR=0.596;VQSLOD=8.97;culprit=FS GT:AD:DP:GQ:PL 0/1:59,53:112:99:1526,0,1551 1 24706329 rs41307808 C A 451.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.856;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=7.102;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=-0.872;SB=-1.110e+02;SOR=2.049;VQSLOD=5.62;culprit=FS GT:AD:DP:GQ:PL 0/1:25,17:42:99:480,0,597 1 24727678 rs2078445 C T 445.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.225;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=-0.740;SB=-1.520e+02;SOR=0.627;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:26,18:44:99:474,0,780 1 24861704 rs196432 G A 846.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-0.094;SB=-3.980e+02;SOR=0.676;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:35,32:67:99:875,0,922 1 24922056 rs12353957 T C 1812.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.753;HaplotypeScore=2.5929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=-0.201;SB=-8.450e+02;SOR=0.834;VQSLOD=7.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,70:113:99:1841,0,1041 1 24922129 rs10903095 G A 1019.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.470;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=-1.124;SB=-2.660e+02;SOR=0.555;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:23,38:61:99:1048,0,669 1 24989762 rs4649011 G T 1756.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-7.140e+02;SOR=1.773;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1785,129,0 1 25098245 rs9332415 T C 1883.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6221;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.91;SB=-2.221e+02;SOR=3.830;VQSLOD=4.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1912,141,0 1 25098341 rs7548438 C T 4275.77 PASS AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3108;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;SB=-1.676e+03;SOR=1.665;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,130:134:99:4304,316,0 1 25153692 rs4649022 G A 1172.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.27;SB=-6.740e+02;SOR=0.941;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:87:1201,87,0 1 25245719 rs200360165 G A 190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.374;SB=-6.500e+01;SOR=1.085;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:219,0,133 1 25254317 rs7517302 C T 1419.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.97;SB=-4.440e+02;SOR=2.448;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1448,111,0 1 25291010 rs6672420 A T 2486.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.26;SB=-1.104e+03;SOR=1.055;VQSLOD=5.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2515,196,0 1 25570550 . A AT 680.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.089;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=0.235;POSITIVE_TRAIN_SITE;QD=21.96;RPA=12,13;RU=T;ReadPosRankSum=-1.206;SB=-1.421e+02;SOR=1.075;STR;VQSLOD=3.94;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,29:32:40:718,40,0 1 25611035 rs2301153 G C 4162.77 PASS AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.39;SB=-1.694e+03;SOR=1.680;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,137:137:99:4191,307,0 1 25628262 . C T 1343.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.220;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.1610;MLEAC=1;MLEAF=0.500;MQ=56.70;MQ0=0;MQRankSum=-0.596;QD=17.68;ReadPosRankSum=0.629;SB=-1.520e+02;SOR=0.533;VQSLOD=2.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,43:76:99:1372,0,907 1 25632992 rs41310401 C A 104.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.57;MQ0=0;MQRankSum=-2.344;POSITIVE_TRAIN_SITE;QD=5.51;ReadPosRankSum=-1.483;SB=0.00;SOR=0.148;VQSLOD=2.87;culprit=QD GT:AD:DP:GQ:PL 0/1:14,5:19:99:133,0,500 1 25655728 . G GT 141.75 PASS AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.45;MQ0=0;QD=17.72;RPA=25,26;RU=T;SB=-2.777e+01;SOR=2.833;STR;VQSLOD=3.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,8:13:24:179,24,0 1 25678238 rs3093616 T A 1795.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.07;SB=-5.500e+02;SOR=2.221;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1824,135,0 1 25711012 rs144299065 C T 278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.467;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-0.248;SB=-1.765e+00;SOR=1.352;VQSLOD=8.18;culprit=FS GT:AD:DP:GQ:PL 0/1:13,10:23:99:307,0,422 1 25780668 rs34006994 C T 1347.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.63;SB=-4.250e+02;SOR=2.200;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1376,102,0 1 25780889 rs66568068 A ATG 254.94 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.253;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.00;MQ0=0;MQRankSum=0.728;POSITIVE_TRAIN_SITE;QD=25.49;RPA=1,2;RU=TG;ReadPosRankSum=-0.493;SB=-2.179e+01;SOR=1.022;STR;VQSLOD=3.99;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,8:16:13:292,13,0 1 25780893 . A G 491.77 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9963;MLEAC=2;MLEAF=1.00;MQ=61.53;MQ0=0;QD=35.13;SB=-4.276e+01;SOR=3.912;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:520,39,0 1 25785451 rs35530120 A G 772.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=-1.055e+02;SOR=3.352;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:801,60,0 1 25889342 rs10687390 CAG C 1481.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;DB;DP=65;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.29;RPA=2,1;RU=AG;ReadPosRankSum=2.362;SB=-3.670e+02;SOR=1.011;STR;VQSLOD=4.72;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:29,32:65:99:1519,0,1343 1 25889422 rs12096438 C T 845.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.084;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.155;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=-0.261;SB=-4.440e+02;SOR=0.437;VQSLOD=10.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,31:63:99:874,0,875 1 25889632 rs6687605 T C 1035.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.528;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.891;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-0.829;SB=-3.580e+02;SOR=0.887;VQSLOD=8.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,37:84:99:1064,0,1269 1 25889672 rs6688931 G A 482.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.771;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.228;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.47;ReadPosRankSum=-1.499;SB=-1.150e+02;SOR=0.906;VQSLOD=6.90;culprit=QD GT:AD:DP:GQ:PL 0/1:38,19:57:99:511,0,1087 1 25890050 rs6661159 A G 508.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.180;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.000;HaplotypeScore=4.6841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.760;SB=-2.402e+01;SOR=1.532;VQSLOD=5.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,16:40:99:537,0,675 1 25890189 rs28969504 A G 1505.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.893;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=2.198;HaplotypeScore=2.6147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=0.476;SB=-8.750e+02;SOR=0.941;VQSLOD=7.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:72,61:134:99:1534,0,1834 1 25893221 rs4523506 G T 313.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.016;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=-0.719;SB=-1.765e+00;SOR=1.765;VQSLOD=7.89;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:342,0,243 1 25893242 rs4418583 T C 384.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.278;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=-0.046;SB=-3.300e+01;SOR=0.560;VQSLOD=9.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,13:28:99:413,0,434 1 25893243 rs4603124 G A 401.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.181;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-0.125;SB=-3.300e+01;SOR=0.569;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:16,14:30:99:430,0,508 1 26085048 rs11321223 AG A 2524.73 PASS AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.71;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;RPA=6,5;RU=G;SB=-4.900e+02;SOR=3.086;STR;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2562,229,0 1 26090072 rs807270 A G 593.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.54;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.69;SB=-2.750e+02;SOR=1.402;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:45:622,45,0 1 26098107 rs2072747 G A 1999.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-7.660e+02;SOR=1.839;VQSLOD=7.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:65:99:2028,150,0 1 26098333 rs807264 G A 1880.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.59;SB=-3.900e+02;SOR=2.958;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1909,141,0 1 26107688 rs807273 C A 4290.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.515;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.59;ReadPosRankSum=-0.322;SB=-2.168e+03;SOR=0.223;VQSLOD=4.74;culprit=FS GT:AD:DP:GQ:PL 1/1:2,143:146:99:4319,319,0 1 26109237 rs12567324 A G 895.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.18;SB=-1.583e+02;SOR=3.180;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:69:924,69,0 1 26110065 rs3820514 A G 2010.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-8.600e+02;SOR=1.751;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2039,144,0 1 26110143 rs3767877 G A 3695.77 PASS AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;SB=-1.927e+03;SOR=1.071;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,122:122:99:3724,277,0 1 26127425 rs6659086 G A 303.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.878;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.21;ReadPosRankSum=-1.479;SB=-2.901e+01;SOR=0.593;VQSLOD=7.91;culprit=FS GT:AD:DP:GQ:PL 0/1:21,12:33:99:332,0,741 1 26128307 rs10902683 C T 689.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.49;SB=-7.497e+01;SOR=3.716;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:718,54,0 1 26131654 rs7349185 G A 1191.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=-4.010e+02;SOR=1.845;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:93:1220,93,0 1 26135741 rs2280997 C G 955.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.165;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=1.065;SB=-1.880e+02;SOR=0.581;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:32,34:66:99:984,0,1002 1 26136452 rs6686366 A C 543.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=0.00;SOR=5.670;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:572,48,0 1 26138136 rs760598 C A 2198.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SB=-1.170e+03;SOR=0.844;VQSLOD=7.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2227,172,0 1 26138262 rs760597 T C 1571.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-8.930e+02;SOR=0.900;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1600,114,0 1 26139137 rs10902685 C T 542.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=-1.205e+02;SOR=2.712;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:571,42,0 1 26139392 rs3738451 A G 2229.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-9.600e+02;SOR=1.488;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2258,166,0 1 26139444 rs10751726 G A 1395.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.89;SB=-1.821e+02;SOR=3.258;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1424,108,0 1 26139879 rs6676413 C G 1004.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.22;SB=-8.297e+01;SOR=4.332;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:75:1033,75,0 1 26139919 rs6676509 C T 1470.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.20;SB=-1.453e+02;SOR=4.174;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1499,117,0 1 26140573 rs2294228 C A 1599.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.09;SB=-9.990e+02;SOR=0.729;VQSLOD=7.14;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,55:55:99:1628,123,0 1 26146884 rs984412 C G 1022.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.10;SB=-1.941e+02;SOR=2.753;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:78:1051,78,0 1 26150023 rs11247758 C T 3342.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5976;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.10;SB=-1.714e+03;SOR=0.930;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:3371,250,0 1 26152666 rs6598923 T C 1534.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.65;SB=-4.020e+02;SOR=2.560;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1563,117,0 1 26152758 rs6598924 A G 3384.77 PASS AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;SB=-1.766e+03;SOR=1.329;VQSLOD=5.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,118:118:99:3413,256,0 1 26158337 rs1961580 C T 445.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.29;SB=-3.677e+01;SOR=3.767;VQSLOD=7.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:474,36,0 1 26310213 rs2275101 T C 259.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.385;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.22;ReadPosRankSum=0.643;SB=-7.500e+01;SOR=1.022;VQSLOD=6.61;culprit=QD GT:AD:DP:GQ:PL 0/1:23,13:36:99:288,0,586 1 26310394 rs2275102 A G 713.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.418;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=7.142;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-0.370;SB=-2.920e+02;SOR=1.096;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 0/1:30,26:56:99:742,0,871 1 26310836 rs3738458 G T 418.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.650;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=0.957;SB=-1.350e+02;SOR=0.602;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:14,16:30:99:447,0,356 1 26314564 rs2245979 T C 875.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.49;SB=-3.876e+01;SOR=5.058;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:904,69,0 1 26317383 rs2992056 G A 663.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.519;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.388;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-0.386;SB=-1.990e+02;SOR=0.382;VQSLOD=9.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,26:51:99:692,0,750 1 26349109 . C CT 1036.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.57;RPA=2,3;RU=T;ReadPosRankSum=0.336;SB=-4.210e+02;SOR=0.818;STR;VQSLOD=8.11;culprit=FS GT:AD:DP:GQ:PL 0/1:26,33:60:99:1074,0,925 1 26349967 rs1938405 C T 275.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=0.436;SB=-1.760e+02;SOR=0.446;VQSLOD=10.27;culprit=FS GT:AD:DP:GQ:PL 0/1:7,13:20:99:304,0,157 1 26357656 rs2736831 C A 1645.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.606;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=0.323;SB=-1.069e+03;SOR=0.725;VQSLOD=8.84;culprit=FS GT:AD:DP:GQ:PL 0/1:77,68:145:99:1674,0,2084 1 26357667 rs11247848 G A 1867.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.298;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=0.111;SB=-1.102e+03;SOR=0.719;VQSLOD=8.48;culprit=FS GT:AD:DP:GQ:PL 0/1:69,76:146:99:1896,0,1730 1 26357855 rs2802321 A G 1529.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-8.130e+02;SOR=0.788;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1558,114,0 1 26358752 . T TA 1357.73 PASS AC=2;AF=1.00;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.70;RPA=2,3;RU=A;SB=-1.553e+02;SOR=3.912;STR;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1395,114,0 1 26361848 rs147726491 C T 1293.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.569;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=1.939;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-1.453;SB=-3.570e+02;SOR=1.051;VQSLOD=7.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,46:92:99:1322,0,1128 1 26365374 rs4659404 T G 356.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.132;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.84;ReadPosRankSum=1.157;SB=-1.790e+02;SOR=0.693;VQSLOD=8.56;culprit=FS GT:AD:DP:GQ:PL 0/1:6,14:21:99:385,0,121 1 26365549 rs2997452 C T 1076.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.481;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.871;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.255;SB=-4.460e+02;SOR=0.513;VQSLOD=10.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,43:86:99:1105,0,1277 1 26370164 rs11585142 G A 574.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.65;SB=-3.976e+01;SOR=4.047;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:603,45,0 1 26372144 rs6686190 A G 896.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.43;SB=-7.897e+01;SOR=4.174;VQSLOD=4.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:925,69,0 1 26487940 rs3748856 A G 1565.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.690;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=1.500;SB=-8.690e+02;SOR=0.770;VQSLOD=7.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,56:114:99:1594,0,1705 1 26496383 rs2232647 G T 357.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.229;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=1.585;SB=-4.176e+01;SOR=0.260;VQSLOD=8.64;culprit=FS GT:AD:DP:GQ:PL 0/1:10,12:22:99:386,0,301 1 26496455 rs2232648 C T 755.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.344;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.935;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=1.108;SB=-3.020e+02;SOR=0.316;VQSLOD=9.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,29:67:99:784,0,1123 1 26510336 rs115982258 C T 333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.54;ReadPosRankSum=1.031;SB=0.00;SOR=1.493;VQSLOD=8.99;culprit=FS GT:AD:DP:GQ:PL 0/1:6,12:18:99:362,0,162 1 26511139 rs2297711 G A 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.162;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=5.021;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=1.860;SB=-2.601e+01;SOR=2.179;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:202,0,177 1 26511700 rs2783680 A G 993.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.86;SB=-6.040e+02;SOR=0.859;VQSLOD=4.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:75:1022,75,0 1 26514111 rs61319457 CT C 166.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQ0=0;MQRankSum=1.163;POSITIVE_TRAIN_SITE;QD=7.25;RPA=20,19;RU=T;ReadPosRankSum=0.468;SB=0.00;SOR=1.708;STR;VQSLOD=2.24;culprit=QD GT:AD:DP:GQ:PL 0/1:7,16:33:80:204,0,80 1 26515956 rs1045105 C A 1096.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.127;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=1.613;HaplotypeScore=2.6457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=1.140;SB=-5.660e+02;SOR=0.985;VQSLOD=7.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,46:105:99:1125,0,1552 1 26517667 rs11247864 T C 642.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.403;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.178;HaplotypeScore=2.6000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=0.064;SB=-2.390e+02;SOR=1.286;VQSLOD=7.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,26:52:99:671,0,642 1 26524706 rs9970046 A G 4283.77 PASS AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9045;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.73;SB=-2.114e+03;SOR=1.117;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,127:127:99:4312,313,0 1 26526554 rs6700024 G A 1990.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.275;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=3.926;HaplotypeScore=1.9329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=-0.912;SB=-1.105e+03;SOR=0.419;VQSLOD=7.93;culprit=DP GT:AD:DP:GQ:PL 0/1:75,77:152:99:2019,0,1867 1 26527255 rs12145714 G A 85.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.58;ReadPosRankSum=-1.483;SB=0.00;SOR=0.412;VQSLOD=9.55;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:99:114,0,219 1 26527260 rs12120359 A G 140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.679;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-1.846;SB=0.00;SOR=0.551;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:169,0,206 1 26527304 rs12121284 T C 418.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=10.193;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=0.898;SB=-5.150e-01;SOR=3.477;VQSLOD=4.98;culprit=FS GT:AD:DP:GQ:PL 0/1:12,13:25:99:447,0,323 1 26527310 rs12118976 C G 398.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.525;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=6.495;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=1.507;SB=-5.150e-01;SOR=3.105;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 0/1:15,14:29:99:427,0,433 1 26527586 . A G 1149.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.246;DP=71;Dels=0.00;ExcessHet=3.0103;FS=2.781;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.19;ReadPosRankSum=-0.231;SB=-2.740e+02;SOR=0.319;VQSLOD=8.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,39:71:99:1178,0,957 1 26527699 rs869139 T C 687.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.333;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.711;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.56;ReadPosRankSum=0.346;SB=-2.400e+02;SOR=1.179;VQSLOD=5.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,21:28:99:716,0,184 1 26527809 rs1889755 A C 1296.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.888;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=1.083;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=1.145;SB=-2.470e+02;SOR=0.535;VQSLOD=9.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,43:93:99:1325,0,1446 1 26527810 rs1889756 G A 1303.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.211;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.834;SB=-2.420e+02;SOR=0.560;VQSLOD=9.10;culprit=FS GT:AD:DP:GQ:PL 0/1:51,45:96:99:1332,0,1579 1 26527951 rs6657616 G A 3073.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.797;DB;DP=245;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.7440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=0.913;SB=-1.856e+03;SOR=0.714;VQSLOD=5.15;culprit=DP GT:AD:DP:GQ:PL 0/1:126,119:245:99:3102,0,3452 1 26528922 rs10902720 C G 567.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.525;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=0.045;SB=-2.600e+02;SOR=0.776;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:31,22:53:99:596,0,792 1 26529121 rs6691747 G C 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-0.708;SB=-1.090e+02;SOR=0.446;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:11,12:23:99:315,0,319 1 26570482 rs367773801 CAAAAAAAAAAA C 2273.73 PASS AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.53;RPA=26,15;RU=A;SB=0.00;SOR=6.184;STR;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:22:63:2311,63,0 1 26582091 rs3795686 G A 2015.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.061;DB;DP=171;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=1.888;SB=-9.220e+02;SOR=0.673;VQSLOD=7.26;culprit=DP GT:AD:DP:GQ:PL 0/1:86,85:171:99:2044,0,2379 1 26597435 rs4659419 G A 2788.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-1.589e+03;SOR=0.953;VQSLOD=4.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:94:99:2817,208,0 1 26597673 rs11247894 G A 545.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.222;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-0.922;SB=-1.227e+01;SOR=1.893;VQSLOD=6.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,19:47:99:574,0,872 1 26601385 rs3795685 G A 1946.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.40;SB=-6.610e+02;SOR=1.765;VQSLOD=5.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1975,147,0 1 26608649 rs12750420 G A 321.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-0.746;SB=-1.320e+02;SOR=0.252;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:9,15:24:99:350,0,223 1 26608782 rs34209692 C T 388.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=-0.167;SB=-1.880e+02;SOR=0.714;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:10,15:25:99:417,0,276 1 26608811 . TCCAGGACAGGGACTGGGGCCGGGA T 1472.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.34;ReadPosRankSum=-1.188;SB=-5.131e+00;SOR=1.085;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:19:88:1510,0,88 1 26608843 rs6667693 C A 395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=13.236;HaplotypeScore=17.3971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.85;ReadPosRankSum=0.654;SB=-2.004e+01;SOR=3.767;VQSLOD=3.06;culprit=FS GT:AD:DP:GQ:PL 0/1:8,13:21:99:424,0,237 1 26608852 rs61775089 G A 448.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.936;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.645;HaplotypeScore=8.5031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.37;ReadPosRankSum=0.196;SB=-5.400e+01;SOR=2.179;VQSLOD=5.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,15:21:99:477,0,152 1 26609259 rs7522905 C T 3169.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.70;SB=-1.477e+03;SOR=1.167;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:3198,241,0 1 26609307 rs6598952 G T 2322.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-1.319e+03;SOR=0.927;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2351,175,0 1 26610891 rs4332350 A C 3966.77 PASS AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-2.187e+03;SOR=0.993;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,127:127:99:3995,304,0 1 26612042 rs11247898 A G 439.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.87;SB=-2.710e+02;SOR=0.804;VQSLOD=4.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:33:468,33,0 1 26620489 rs3732416 T C 461.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=0.00;SOR=5.283;VQSLOD=8.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:490,36,0 1 26620846 rs67700711 C CA 4081.73 PASS AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.89;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.42;SB=-1.146e+03;SOR=1.939;VQSLOD=5.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:85:99:4119,253,0 1 26624327 rs4290051 G A 437.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.29;SB=-3.577e+01;SOR=3.611;VQSLOD=8.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:466,36,0 1 26627283 rs4291487 A G 626.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.82;SB=0.00;SOR=5.892;VQSLOD=9.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:655,54,0 1 26627478 rs2276712 T C 3545.77 PASS AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.80;SB=-2.096e+03;SOR=0.744;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,119:119:99:3574,268,0 1 26629465 rs11803933 G C 798.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-1.643e+02;SOR=2.925;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:827,66,0 1 26646726 rs1071849 A G 1579.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6939;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=-8.630e+02;SOR=1.061;VQSLOD=5.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1608,114,0 1 26646730 rs17645 A G 1493.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.66;SB=-8.170e+02;SOR=1.022;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1522,108,0 1 26648551 rs11247913 G C 4182.77 PASS AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-2.223e+03;SOR=0.895;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,139:139:99:4211,310,0 1 26650550 rs11247915 C A 562.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.843;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=4.353;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=1.084;SB=-5.800e+01;SOR=2.075;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 0/1:15,20:35:99:591,0,402 1 26654937 rs11589684 G C 1350.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.95;SB=-4.000e+02;SOR=2.247;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1379,99,0 1 26655208 rs11247916 C T 779.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=5.083;HaplotypeScore=2.5873;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=1.127;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-0.192;SB=-2.220e+02;SOR=0.180;VQSLOD=0.645;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,31:57:99:808,0,780 1 26655462 rs12057290 C T 565.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.803;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=0.670;SB=-1.680e+02;SOR=0.625;VQSLOD=10.11;culprit=FS GT:AD:DP:GQ:PL 0/1:20,23:43:99:594,0,603 1 26655507 rs11247917 C A 308.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.797;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=0.845;SB=0.00;SOR=0.914;VQSLOD=10.36;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:337,0,267 1 26662774 rs7517559 C T 3735.77 PASS AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6348;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.27;SB=-1.077e+03;SOR=2.115;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,109:109:99:3764,280,0 1 26662904 rs72649360 C T 1799.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;DB;DP=162;Dels=0.00;ExcessHet=3.0103;FS=5.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=-1.945;SB=-1.158e+03;SOR=0.382;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 0/1:89,73:162:99:1828,0,2396 1 26663362 rs10751735 C T 584.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.184;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.023;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=-1.449;SB=-3.460e+02;SOR=0.680;VQSLOD=6.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,23:57:99:613,0,999 1 26664219 rs4072445 T C 636.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=8.290;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.434;SB=-9.000e+01;SOR=2.256;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 0/1:19,21:40:99:665,0,467 1 26664968 rs11247919 C T 1043.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.344;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-2.099;SB=-6.090e+02;SOR=0.612;VQSLOD=9.30;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:43,39:82:99:1072,0,1105 1 26665991 rs6675432 C G 146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=0.906;SB=0.00;SOR=0.693;VQSLOD=9.76;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:175,0,175 1 26670444 rs36024412 G T 1454.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.578;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=4.626;HaplotypeScore=1.7853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-0.696;SB=-5.630e+02;SOR=1.230;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 0/1:62,58:120:99:1483,0,1628 1 26670609 rs34370465 C T 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.30;ReadPosRankSum=-2.372;SB=-7.800e+01;SOR=0.818;VQSLOD=8.15;culprit=QD GT:AD:DP:GQ:PL 0/1:23,10:34:99:203,0,727 1 26671505 . AACCTCTTTCCAGGTGGGAAATGAGGCATCAGGAGCACCGGGGCCCTTCACG A 6998.73 PASS AC=2;AF=1.00;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.67;SB=-2.134e+03;SOR=1.292;VQSLOD=3.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:36:57:7036,57,0 1 26671575 rs11579834 A G 879.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3905;MLEAC=2;MLEAF=1.00;MQ=61.55;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.84;SB=-4.030e+02;SOR=1.220;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:69:908,69,0 1 26689659 rs11247932 G A 2672.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-1.053e+03;SOR=1.749;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:88:99:2701,196,0 1 26690864 rs7534104 G T 965.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.72;SB=0.00;SOR=6.518;VQSLOD=8.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:75:994,75,0 1 26691174 rs11247933 C A 3600.77 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;SB=-1.797e+03;SOR=1.149;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,114:114:99:3629,268,0 1 26700795 rs7520030 T C 711.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-3.560e+02;SOR=1.179;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:54:740,54,0 1 26752992 . T C 2596.77 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.85;SB=-1.058e+03;SOR=1.749;VQSLOD=5.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2625,205,0 1 26769543 . C CTTTTTT 1083.73 PASS AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;RPA=5,11;RU=T;SB=-4.476e+01;SOR=4.047;STR;VQSLOD=5.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:16:45:1121,45,0 1 26786627 rs3816539 G A 2934.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.49;SB=-1.709e+03;SOR=0.925;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:2963,217,0 1 26846195 rs4970514 C T 480.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.44;SB=-2.341e+02;SOR=0.836;VQSLOD=4.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:14:39:509,39,0 1 26869610 rs921893 G A 2401.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-9.510e+02;SOR=1.854;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2430,178,0 1 26870730 rs1466286 C G 2618.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-1.294e+03;SOR=1.302;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2647,190,0 1 26872554 rs12723936 A G 507.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.21;SB=-3.520e+02;SOR=0.693;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:39:536,39,0 1 26873245 rs2278978 A G 1178.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=0.00;SOR=6.994;VQSLOD=7.85;culprit=DP GT:AD:DP:GQ:PL 1/1:0,32:32:90:1207,90,0 1 26877708 rs2278979 G A 1385.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.23;SB=0.00;SOR=7.569;VQSLOD=3.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1414,114,0 1 26879376 rs7543005 T C 207.84 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.3849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=15.99;SB=-3.577e+01;SOR=0.836;VQSLOD=3.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:18:236,18,0 1 26879792 rs4970489 T C 675.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.59;SB=-4.176e+01;SOR=4.407;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:704,54,0 1 26879920 rs4970490 T C 1499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-7.330e+02;SOR=1.112;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1528,114,0 1 26880288 rs2290589 C T 332.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-8.197e+01;SOR=2.494;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:361,27,0 1 26880989 rs873151 T C 1929.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.67;SB=-2.520e+02;SOR=3.611;VQSLOD=4.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1958,144,0 1 26881806 rs897641 C A 2077.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=-8.910e+02;SOR=1.366;VQSLOD=7.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2106,160,0 1 26887150 rs34062688 A G 3485.77 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.28;SB=-1.068e+03;SOR=2.259;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,108:108:99:3514,253,0 1 26887592 rs1064196 T C 4484.77 PASS AC=2;AF=1.00;AN=2;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.31;SB=-2.348e+03;SOR=1.071;VQSLOD=5.74;culprit=DP GT:AD:DP:GQ:PL 1/1:0,153:153:99:4513,331,0 1 26898142 rs188158 A G 5880.77 PASS AC=2;AF=1.00;AN=2;DB;DP=176;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.41;SB=-2.669e+03;SOR=1.356;VQSLOD=6.58;culprit=DP GT:AD:DP:GQ:PL 1/1:0,176:176:99:5909,430,0 1 26898956 rs282176 T C 1448.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-6.000e+02;SOR=1.708;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1477,105,0 1 26899671 rs2296399 C G 614.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.727;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=6.529;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=-0.044;SB=-6.100e+01;SOR=2.124;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 0/1:18,20:38:99:643,0,477 1 26900735 rs282179 C G 5069.77 PASS AC=2;AF=1.00;AN=2;DB;DP=160;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.69;SB=-2.595e+03;SOR=1.172;VQSLOD=6.32;culprit=DP GT:AD:DP:GQ:PL 1/1:0,160:160:99:5098,364,0 1 26901090 rs11113 C T 317.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=1.042;SB=-6.700e+01;SOR=1.244;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:8,12:20:99:346,0,188 1 27210721 rs3170660 T C 806.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.811;HaplotypeScore=3.6218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.67;ReadPosRankSum=0.263;SB=-4.720e+02;SOR=0.593;VQSLOD=9.18;culprit=QD GT:AD:DP:GQ:PL 0/1:61,32:93:99:835,0,1686 1 27210722 rs78109142 G A 742.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.900;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.07;ReadPosRankSum=0.421;SB=-4.240e+02;SOR=0.544;VQSLOD=8.52;culprit=QD GT:AD:DP:GQ:PL 0/1:61,31:92:99:771,0,1736 1 27220020 . C CT 130.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.917;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQ0=0;MQRankSum=-0.804;POSITIVE_TRAIN_SITE;QD=6.54;RPA=21,22;RU=T;ReadPosRankSum=1.522;SB=0.00;SOR=0.892;STR;VQSLOD=3.21;culprit=QD GT:AD:DP:GQ:PL 0/1:9,11:32:94:168,0,94 1 27271785 rs148612186 T A 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=0.872;SB=0.00;SOR=1.609;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:78:241,0,78 1 27426796 rs4266911 T C 718.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.23;SB=-1.055e+02;SOR=3.160;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:747,54,0 1 27427041 rs4418629 T C 2934.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6206;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.94;SB=-1.622e+03;SOR=0.843;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2963,217,0 1 27503450 . T TC 225.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;DP=16;ExcessHet=3.0103;FS=5.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.11;RPA=4,5;RU=C;ReadPosRankSum=0.409;SB=-9.000e+01;SOR=0.889;STR;VQSLOD=4.14;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:263,0,259 1 27589936 rs115016300 A T 82.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.28;ReadPosRankSum=-0.223;SB=0.00;SOR=0.412;VQSLOD=9.52;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:99:111,0,192 1 27609980 rs6670124 T G 3753.77 PASS AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;SB=-2.079e+03;SOR=0.946;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,113:113:99:3782,271,0 1 27610069 rs10902656 C T 692.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.856;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=5.445;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.00;ReadPosRankSum=-0.107;SB=-1.360e+02;SOR=1.497;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 0/1:50,27:77:99:721,0,1416 1 27622596 rs4970517 A G 94.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.572;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.90;ReadPosRankSum=0.984;SB=0.00;SOR=0.269;VQSLOD=9.27;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:99:123,0,267 1 27627974 rs115643786 G A 2236.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=1.304;HaplotypeScore=3.5791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=1.310;SB=-1.456e+03;SOR=0.576;VQSLOD=7.92;culprit=DP GT:AD:DP:GQ:PL 0/1:62,86:148:99:2265,0,1491 1 27652132 rs79070316 A G 216.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=1.145;SB=-1.260e+02;SOR=0.653;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:245,0,196 1 27658368 rs149506843 CCTT C 1230.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;DB;DP=53;ExcessHet=3.0103;FS=2.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.22;RPA=2,1;RU=CTT;ReadPosRankSum=1.198;SB=-1.140e+02;SOR=0.247;STR;VQSLOD=7.02;culprit=SOR GT:AD:DP:GQ:PL 0/1:29,24:53:99:1268,0,1610 1 27659965 rs6687283 C T 518.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.89;SB=0.00;SOR=5.421;VQSLOD=7.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:547,42,0 1 27660340 rs12758154 T C 676.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.670;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.11;ReadPosRankSum=0.075;SB=-1.765e+00;SOR=1.685;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 0/1:21,21:42:99:705,0,600 1 27660568 rs35771571 G A 3255.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.519;DB;DP=197;Dels=0.00;ExcessHet=3.0103;FS=5.105;HaplotypeScore=2.8313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.53;ReadPosRankSum=-1.314;SB=-1.834e+03;SOR=0.426;VQSLOD=4.71;culprit=DP GT:AD:DP:GQ:PL 0/1:83,114:197:99:3284,0,2138 1 27661037 rs12565684 T C 754.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.887;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.199;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=2.039;SB=-6.400e+01;SOR=2.226;VQSLOD=5.85;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:20,24:44:99:783,0,562 1 27673679 rs77554574 A G 52.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.77;ReadPosRankSum=-0.312;SB=-5.150e-01;SOR=1.426;VQSLOD=7.63;culprit=QD GT:AD:DP:GQ:PL 0/1:11,3:14:81:81,0,297 1 27674207 . A T 37.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.3773;MLEAC=1;MLEAF=0.500;MQ=59.17;MQ0=0;MQRankSum=-1.588;QD=2.36;ReadPosRankSum=2.007;SB=-5.150e-01;SOR=1.609;VQSLOD=0.548;culprit=QD GT:AD:DP:GQ:PL 0/1:12,4:16:66:66,0,398 1 27675700 rs41291090 C G 209.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.548;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.140;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-1.171;SB=-9.732e-01;SOR=2.093;VQSLOD=5.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,7:17:99:238,0,294 1 27677930 rs12561870 G A 514.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.607;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.440;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.61;ReadPosRankSum=2.378;SB=-2.990e+02;SOR=0.446;VQSLOD=8.20;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:11,20:31:99:543,0,272 1 27679692 rs11247639 A G 3007.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-2.351e+02;SOR=4.752;VQSLOD=5.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:3036,232,0 1 27679797 rs3813795 A G 7259.77 PASS AC=2;AF=1.00;AN=2;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8936;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.04;SB=-4.053e+03;SOR=1.129;VQSLOD=3.05;culprit=DP GT:AD:DP:GQ:PL 1/1:0,250:250:99:7288,551,0 1 27682440 rs34014745 T TG 2471.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.043;DB;DP=103;ExcessHet=3.0103;FS=1.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.23;ReadPosRankSum=-0.452;SB=-1.086e+03;SOR=0.535;VQSLOD=7.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,60:103:99:2509,0,1710 1 27682481 rs12569127 G A 1901.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.234;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQ0=0;MQRankSum=1.218;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=-1.390;SB=-1.111e+03;SOR=0.711;VQSLOD=2.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,68:117:99:1930,0,1261 1 27686063 rs7521552 G C 2798.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.13;SB=-7.900e+02;SOR=2.303;VQSLOD=7.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2827,205,0 1 27688792 rs376624035 A G 699.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.50;ReadPosRankSum=-0.394;SB=-3.760e+02;SOR=0.661;VQSLOD=8.16;culprit=FS GT:AD:DP:GQ:PL 0/1:27,29:56:99:728,0,802 1 27689763 rs4525067 C T 1057.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.2763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=-0.143;SB=-1.050e+02;SOR=0.818;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:23,35:58:99:1086,0,667 1 27690644 rs12727507 A G 727.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.034;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=0.850;SB=-4.530e+02;SOR=0.472;VQSLOD=10.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,31:57:99:756,0,767 1 27696011 rs10218730 C T 2107.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.64;SB=-2.241e+02;SOR=4.066;VQSLOD=2.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:2136,163,0 1 27696101 rs72882747 C A 111.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.464;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.45;ReadPosRankSum=0.980;SB=0.00;SOR=0.260;VQSLOD=9.04;culprit=QD GT:AD:DP:GQ:PL 0/1:10,5:15:99:140,0,346 1 27697474 rs3813800 G C 295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.176;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=0.322;SB=-1.340e+02;SOR=1.009;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:14,14:28:99:324,0,321 1 27709020 rs2504779 T C 960.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.625;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.704;SB=-4.150e+02;SOR=0.776;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:35,37:72:99:989,0,988 1 27720178 rs2504786 T C 351.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.204;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.351;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.18;ReadPosRankSum=0.715;SB=-1.600e+02;SOR=0.392;VQSLOD=9.31;culprit=QD GT:AD:DP:GQ:PL 0/1:33,16:49:99:380,0,993 1 27736478 rs2273270 T C 121.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.003;HaplotypeScore=1.9952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.76;ReadPosRankSum=0.817;SB=-9.400e+01;SOR=0.669;VQSLOD=4.47;culprit=QD GT:AD:DP:GQ:PL 0/1:11,7:18:99:150,0,319 1 27875824 rs4908364 C T 1109.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.64;SB=-4.140e+02;SOR=1.609;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:87:1138,87,0 1 27876482 rs2076457 C A 2589.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.97;SB=-1.322e+03;SOR=0.821;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2618,193,0 1 27942276 rs142998887 G A 1067.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=2.031;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.04;ReadPosRankSum=-1.225;SB=-4.750e+02;SOR=1.055;VQSLOD=6.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,39:71:99:1096,0,808 1 27944000 rs1292089 T A 1153.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.48;SB=-1.603e+02;SOR=3.545;VQSLOD=4.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:87:1182,87,0 1 27992800 . C CA 346.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.691;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.59;MQ0=0;MQRankSum=-0.224;POSITIVE_TRAIN_SITE;QD=17.34;RPA=23,24;RU=A;ReadPosRankSum=0.539;SB=-7.894e+00;SOR=2.670;STR;VQSLOD=1.34;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,18:29:26:293,26,0 1 27995077 rs56015130 G T 508.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.179;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.146;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=-0.718;SB=-7.400e+01;SOR=0.889;VQSLOD=6.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,21:51:99:537,0,795 1 27995565 rs71514291 C T 287.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=1;POSITIVE_TRAIN_SITE;QD=28.78;SB=-4.176e+01;SOR=3.056;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:1,9:11:24:316,24,0 1 28058934 rs76507279 G A 320.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.052;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.946;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=0.069;SB=-1.030e+02;SOR=0.298;VQSLOD=9.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,13:28:99:349,0,504 1 28058990 rs74063884 G T 733.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.345;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=1.093;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=0.203;SB=-1.840e+02;SOR=1.016;VQSLOD=7.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,29:70:99:762,0,1198 1 28060574 rs6670793 A G 783.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.122;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=6.360;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=0.135;SB=-3.900e+02;SOR=0.393;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 0/1:44,29:73:99:812,0,1182 1 28086955 rs10902671 C A 1595.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.29;SB=-7.790e+02;SOR=1.201;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1624,120,0 1 28116000 rs2294229 A G 611.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.718;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=3.901;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-0.403;SB=-1.470e+02;SOR=0.223;VQSLOD=9.84;culprit=SOR GT:AD:DP:GQ:PL 0/1:25,23:48:99:640,0,765 1 28173614 rs12567719 C G 938.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.035;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.053;HaplotypeScore=2.8241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=-0.270;SB=-3.990e+02;SOR=0.917;VQSLOD=7.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,35:60:99:967,0,597 1 28211650 rs1467464 T C 522.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.763;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=6.236;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=-2.515;SB=-1.085e+02;SOR=0.061;VQSLOD=9.13;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:15,18:33:99:551,0,447 1 28212272 rs11247705 G A 734.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.70;ReadPosRankSum=0.506;SB=-2.420e+02;SOR=0.631;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:17,27:44:99:763,0,481 1 28224312 rs2295367 C T 354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.141;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=2.027;SB=-6.400e+01;SOR=1.685;VQSLOD=5.83;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,12:21:99:383,0,216 1 28268573 rs10902678 C T 273.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.187;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=7.973;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.02;ReadPosRankSum=1.734;SB=-3.436e-02;SOR=2.998;VQSLOD=5.27;culprit=QD GT:AD:DP:GQ:PL 0/1:28,11:39:99:302,0,852 1 28268829 . T TC 883.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.94;RPA=5,6;RU=C;ReadPosRankSum=1.637;SB=-3.790e+02;SOR=0.682;STR;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 0/1:42,32:80:99:921,0,1331 1 28268835 . A C 876.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.468;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.24;ReadPosRankSum=1.346;SB=-4.610e+02;SOR=0.593;VQSLOD=7.84;culprit=FS GT:AD:DP:GQ:PL 0/1:44,34:78:99:905,0,1155 1 28282819 rs4908381 T C 1271.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.61;SB=-3.510e+02;SOR=2.362;VQSLOD=7.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:93:1300,93,0 1 28290231 rs4373781 C G 796.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.773;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.274;HaplotypeScore=2.8386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=0.143;SB=-1.880e+02;SOR=0.481;VQSLOD=9.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,27:55:99:825,0,816 1 28343518 rs17162928 G T 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.247;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=0.000;SB=0.00;SOR=0.693;VQSLOD=10.36;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:246,0,267 1 28369279 rs2476547 G A 305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.147;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.646;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=-0.443;SB=-7.001e+01;SOR=0.136;VQSLOD=8.84;culprit=QD GT:AD:DP:GQ:PL 0/1:21,13:34:99:334,0,714 1 28374836 rs199586294 GA G 216.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.045;DB;DP=32;ExcessHet=3.0103;FS=5.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.99;RPA=11,10;RU=A;ReadPosRankSum=-0.715;SB=-7.500e+01;SOR=1.196;STR;VQSLOD=3.92;culprit=QD GT:AD:DP:GQ:PL 0/1:17,14:32:99:254,0,349 1 28422847 rs2989472 C T 2551.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.67;SB=-1.418e+03;SOR=1.065;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2580,190,0 1 28819318 . C G 167.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-0.339;SB=-2.901e+01;SOR=0.293;VQSLOD=8.21;culprit=QD GT:AD:DP:GQ:PL 0/1:12,7:19:99:196,0,439 1 28897681 . A T 985.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.739;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.71;ReadPosRankSum=0.890;SB=-1.970e+02;SOR=0.635;VQSLOD=8.01;culprit=FS GT:AD:DP:GQ:PL 0/1:25,34:59:99:1014,0,658 1 28905888 . CA C 113.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.623;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.34;MQ0=0;MQRankSum=1.783;QD=4.55;RPA=19,18;RU=A;ReadPosRankSum=1.443;SB=0.00;SOR=0.622;STR;VQSLOD=1.33;culprit=QD GT:AD:DP:GQ:PL 0/1:13,12:27:99:151,0,192 1 29016715 . GT G 102.25 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.39;RPA=21,20;RU=T;ReadPosRankSum=0.425;SB=-3.113e+01;SOR=1.473;STR;VQSLOD=8.20;culprit=QD GT:AD:DP:GQ:PL 0/1:4,12:25:9:139,0,9 1 29016719 . T G 48.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.469;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.6289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.22;ReadPosRankSum=1.235;SB=-2.501e+01;SOR=0.368;VQSLOD=7.18;culprit=QD GT:AD:DP:GQ:PL 0/1:18,4:22:77:77,0,466 1 29018316 rs200962078 TTTTA T 1532.73 PASS AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.97;RPA=11,10;RU=TTTA;SB=-2.183e+02;SOR=3.407;STR;VQSLOD=4.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:60:90:1570,90,0 1 29019724 rs4654365 G A 645.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.4022;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-4.076e+01;SOR=4.407;VQSLOD=7.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:674,51,0 1 29037240 . C CT 109.80 PASS AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;POSITIVE_TRAIN_SITE;QD=18.30;RPA=12,13;RU=T;SB=0.00;SOR=3.912;STR;VQSLOD=4.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,6:9:18:147,18,0 1 29063559 rs6697540 A C 1601.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.37;SB=-4.400e+02;SOR=2.400;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1630,117,0 1 29070609 rs144677360 A AG 891.73 PASS AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.81;SB=0.00;SOR=5.994;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:929,57,0 1 29138975 rs1042114 G T 2656.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.50;SB=-5.470e+02;SOR=2.804;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2685,202,0 1 29185313 rs112411290 C T 1458.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.04;SB=-4.200e+02;SOR=2.160;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1487,108,0 1 29189597 rs2234918 C T 2924.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-1.395e+03;SOR=1.280;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,92:92:99:2953,226,0 1 29320169 . C CT 125.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.184;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.42;RPA=17,18;RU=T;ReadPosRankSum=-0.724;SB=0.00;SOR=3.611;STR;VQSLOD=4.89;culprit=FS GT:AD:DP:GQ:PL 1/1:1,11:16:11:162,11,0 1 29345009 rs33976881 C CTT 870.73 PASS AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.24;SB=0.00;SOR=5.784;VQSLOD=7.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:18:51:908,51,0 1 29345027 rs2985334 T G 374.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.03;SB=0.00;SOR=4.804;VQSLOD=8.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:403,30,0 1 29379561 . A C 130.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.825;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-1.960;SB=-4.176e+01;SOR=0.105;VQSLOD=7.73;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:8,6:14:99:159,0,272 1 29439016 rs4654390 T A 3124.77 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.76;SB=-1.720e+03;SOR=1.064;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:105:99:3153,226,0 1 29475648 rs2230679 T G 1534.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.42;SB=-8.070e+02;SOR=1.220;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1563,111,0 1 29522384 rs2291611 G A 1393.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;SB=-4.470e+02;SOR=2.303;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1422,111,0 1 29529699 rs1062924 T C 2988.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-1.309e+03;SOR=1.313;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:3017,226,0 1 29542435 rs2640469 C G 1837.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.03;SB=-5.190e+02;SOR=2.303;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1866,135,0 1 29542637 rs1128400 A G 3099.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.96;SB=-1.559e+03;SOR=1.214;VQSLOD=7.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:3128,226,0 1 29542926 rs3003636 A T 370.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.03;SB=0.00;SOR=4.804;VQSLOD=8.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:399,30,0 1 29557224 rs2640466 C T 1171.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;SB=-6.580e+02;SOR=0.968;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:40:90:1200,90,0 1 29563411 rs12041477 G A 1201.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-2.700e+02;SOR=2.712;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:37:96:1230,96,0 1 29581937 rs16838065 G A 382.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.458;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=0.322;SB=-9.000e+01;SOR=1.055;VQSLOD=7.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,15:40:99:411,0,660 1 29602320 rs76920782 G A 853.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.141;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=3.640;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=1.106;SB=-1.410e+02;SOR=1.175;VQSLOD=6.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,34:81:99:882,0,1290 1 29605646 rs72651203 C T 853.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.895;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.817;HaplotypeScore=5.5181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.18;ReadPosRankSum=-1.121;SB=-5.070e+02;SOR=0.489;VQSLOD=8.64;culprit=QD GT:AD:DP:GQ:PL 0/1:59,34:93:99:882,0,1588 1 29609502 rs111595207 TG T 1608.73 PASS AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.66;MQ0=0;QD=29.08;RPA=6,5;RU=G;SB=-4.720e+02;SOR=1.880;STR;VQSLOD=4.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:49:99:1646,135,0 1 29609536 rs72884571 G A 570.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.791;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=5.402;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.68;ReadPosRankSum=-0.051;SB=-2.391e+02;SOR=0.061;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 0/1:7,22:29:99:599,0,202 1 29611123 rs2281378 C T 68.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.25;ReadPosRankSum=0.525;SB=-5.000e+01;SOR=1.022;VQSLOD=8.83;culprit=QD GT:AD:DP:GQ:PL 0/1:6,5:11:97:97,0,184 1 29630455 rs2295061 C T 315.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.278;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.860;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-0.247;SB=-2.040e+02;SOR=0.986;VQSLOD=6.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,15:22:99:344,0,167 1 29631236 rs10641752 C CTA 3771.73 PASS AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-1.297e+03;SOR=1.542;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:3809,205,0 1 29631782 rs2235935 C T 553.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.291;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=-1.682;SB=-2.302e+01;SOR=1.105;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:20,18:38:99:582,0,650 1 29631909 rs2235937 A G 1537.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.178;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=3.230;HaplotypeScore=2.7780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=1.195;SB=-9.870e+02;SOR=0.566;VQSLOD=8.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,60:126:99:1566,0,1665 1 29633491 rs67244862 T TCAGCC 382.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.66;RPA=2,3;RU=CAGCC;ReadPosRankSum=0.763;SB=0.00;SOR=0.569;STR;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:420,0,489 1 29637136 rs2235939 T C 63.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.730;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.38;ReadPosRankSum=0.536;SB=-3.101e+01;SOR=0.169;VQSLOD=8.63;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:92:92,0,204 1 29642290 rs2076621 T A 113.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.11;ReadPosRankSum=0.511;SB=-1.765e+00;SOR=0.784;VQSLOD=9.09;culprit=QD GT:AD:DP:GQ:PL 0/1:11,5:16:99:142,0,361 1 29642318 rs2179795 G T 353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.390;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=0.963;SB=0.00;SOR=0.963;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:10,13:23:99:382,0,324 1 29649874 rs10915252 T C 2702.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.86;SB=-1.626e+03;SOR=1.044;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:2731,193,0 1 29651995 rs35787885 C T 386.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.348;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.470;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=-1.186;SB=-8.000e+01;SOR=1.179;VQSLOD=6.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,14:39:99:415,0,737 1 29652068 rs2076618 T C 1895.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.30;SB=-9.180e+02;SOR=1.318;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:1924,138,0 1 29652327 rs68078224 T C 63.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.31;ReadPosRankSum=1.149;SB=-3.100e+01;SOR=0.551;VQSLOD=8.47;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:92:92,0,222 1 29696060 rs56203706 T C 1343.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-4.260e+02;SOR=2.007;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1372,99,0 1 29842303 rs140458694 T C 415.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.275;DB;DP=24;Dels=0.04;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.7491;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=1.782;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=1.753;SB=-1.790e+02;SOR=1.739;VQSLOD=2.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,17:23:84:444,0,84 1 29843107 rs75957642 C G 978.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.687;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=2.105;HaplotypeScore=2.8818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=-0.134;SB=-2.480e+02;SOR=1.145;VQSLOD=7.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,35:84:99:1007,0,1350 1 31186254 rs1188405 A G 326.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=0.00;SOR=4.977;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:355,30,0 1 31186387 rs1746059 C T 1212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.826;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.967;SB=-6.460e+02;SOR=0.539;VQSLOD=9.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,51:89:99:1241,0,970 1 31188089 rs1065755 C T 2034.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.328;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=0.580;HaplotypeScore=1.8315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=1.081;SB=-1.012e+03;SOR=0.766;VQSLOD=8.44;culprit=DP GT:AD:DP:GQ:PL 0/1:81,82:163:99:2063,0,2141 1 31188901 rs20566 A G 5376.77 PASS AC=2;AF=1.00;AN=2;DB;DP=180;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-3.263e+03;SOR=0.715;VQSLOD=5.07;culprit=DP GT:AD:DP:GQ:PL 1/1:0,180:180:99:5405,409,0 1 31191516 rs10914186 G C 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=-0.536;SB=0.00;SOR=1.609;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:88:246,0,88 1 31192128 rs3790493 C T 657.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.713;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=-1.757;SB=-1.040e+02;SOR=1.022;VQSLOD=9.10;culprit=FS GT:AD:DP:GQ:PL 0/1:17,22:39:99:686,0,490 1 31196464 rs74975149 C T 505.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.733;HaplotypeScore=1.9990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=0.402;SB=-1.580e+02;SOR=1.204;VQSLOD=7.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,19:46:99:534,0,741 1 31210667 rs1188355 G A 854.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-1.145e+02;SOR=3.098;VQSLOD=7.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:69:883,69,0 1 31215364 rs1050663 T C 7216.77 PASS AC=2;AF=1.00;AN=2;DB;DP=240;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.07;SB=-3.290e+03;SOR=1.297;VQSLOD=4.74;culprit=DP GT:AD:DP:GQ:PL 1/1:0,240:240:99:7245,539,0 1 31346199 rs1539360 G A 1597.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.476;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=8.422;HaplotypeScore=1.8316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.212;SB=-9.510e+02;SOR=0.265;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 0/1:64,66:130:99:1626,0,1716 1 31349642 rs41269521 C T 177.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.419;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.35;ReadPosRankSum=-0.862;SB=-1.230e+02;SOR=0.593;VQSLOD=9.13;culprit=QD GT:AD:DP:GQ:PL 0/1:19,9:28:99:206,0,623 1 31349647 rs2491132 C T 183.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.34;ReadPosRankSum=-1.056;SB=-1.150e+02;SOR=0.743;VQSLOD=8.76;culprit=QD GT:AD:DP:GQ:PL 0/1:19,10:29:99:212,0,552 1 31351513 rs1891419 G A 1057.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.559;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=9.006;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-0.342;SB=-5.230e+02;SOR=0.992;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 0/1:43,40:83:99:1086,0,1083 1 31409726 rs56387244 CCT C 2050.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.374;DB;DP=131;ExcessHet=3.0103;FS=2.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=0.050;SB=-3.890e+02;SOR=1.030;VQSLOD=6.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:79,44:131:99:2088,0,4084 1 31413972 rs3795433 T C 1074.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.028;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.909;HaplotypeScore=3.5306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-0.718;SB=-5.740e+02;SOR=0.553;VQSLOD=9.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,43:76:99:1103,0,795 1 31415038 . TTATATATATA T 689.27 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.282;DP=13;ExcessHet=3.0103;FS=9.542;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.98;RPA=22,17;RU=TA;ReadPosRankSum=0.967;SB=-1.772e+00;SOR=4.398;STR;VQSLOD=4.57;culprit=FS GT:AD:DP:GQ:PL 1/1:1,8:13:1:724,1,0 1 31415050 . A T 133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;DP=11;Dels=0.00;ExcessHet=3.0103;FS=7.404;HaplotypeScore=1.8663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.16;ReadPosRankSum=2.260;SB=-9.732e-01;SOR=3.352;VQSLOD=3.52;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,6:11:97:162,0,97 1 31418119 rs12142833 C T 315.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.477;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.70;ReadPosRankSum=-1.059;SB=-1.210e+02;SOR=0.399;VQSLOD=8.82;culprit=QD GT:AD:DP:GQ:PL 0/1:27,14:41:99:344,0,757 1 31426815 rs2275741 A G 2302.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=-7.750e+02;SOR=1.917;VQSLOD=7.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2331,172,0 1 31440921 rs4317854 G A 678.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.30;SB=0.00;SOR=5.994;VQSLOD=8.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:707,57,0 1 31445932 rs2491135 C G 548.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.30;SB=-7.697e+01;SOR=3.258;VQSLOD=4.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:577,42,0 1 31446071 rs368200818 T A 101.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=4.384;HaplotypeScore=14.0671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.08;ReadPosRankSum=1.097;SB=-2.539e+00;SOR=1.938;VQSLOD=3.56;culprit=QD GT:AD:DP:GQ:PL 0/1:27,6:33:99:130,0,647 1 31446099 . T TA 114.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;DP=24;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.74;RPA=16,17;RU=A;ReadPosRankSum=-0.494;SB=-1.514e+01;SOR=1.609;STR;VQSLOD=5.12;culprit=QD GT:AD:DP:GQ:PL 0/1:11,9:24:99:152,0,164 1 31478638 rs144492568 AAGAGAG A 3681.73 PASS AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.90;RPA=16,13;RU=AG;SB=-1.256e+03;SOR=1.609;STR;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:55:99:3719,147,0 1 31479005 rs1337046 C T 612.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.098;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.864;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-0.170;SB=-1.580e+02;SOR=1.241;VQSLOD=7.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,24:47:99:641,0,602 1 31501755 rs4949331 T C 742.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.668;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.05;ReadPosRankSum=-0.404;SB=-1.370e+02;SOR=0.982;VQSLOD=10.29;culprit=FS GT:AD:DP:GQ:PL 0/1:15,24:39:99:771,0,383 1 31654940 rs2297959 C T 355.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=0.00;SOR=4.977;VQSLOD=8.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:384,30,0 1 31712314 rs12025507 C T 208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=1.822;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.103;SB=-1.230e+02;SOR=0.732;VQSLOD=5.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,9:16:99:237,0,173 1 31733721 rs71777720 A AAAG 148.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.13;MQ0=0;MQRankSum=2.522;POSITIVE_TRAIN_SITE;QD=7.83;ReadPosRankSum=-1.068;SB=0.00;SOR=0.148;VQSLOD=2.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,5:19:99:186,0,491 1 31734033 rs35456520 CA C 116.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=0.623;POSITIVE_TRAIN_SITE;QD=7.78;RPA=15,14;RU=A;ReadPosRankSum=0.340;SB=0.00;SOR=0.818;STR;VQSLOD=2.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,8:17:99:154,0,110 1 31740668 rs3753374 C T 262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.260;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=1.340;SB=-1.050e+02;SOR=0.551;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:291,0,201 1 31740706 rs3753373 A G 310.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.972;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=-0.809;SB=-1.660e+02;SOR=0.859;VQSLOD=10.10;culprit=FS GT:AD:DP:GQ:PL 0/1:15,14:29:99:339,0,389 1 31744168 rs3737755 G A 259.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.054;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.897;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=1.418;SB=-6.100e+01;SOR=1.329;VQSLOD=7.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,10:22:99:288,0,292 1 31754511 rs4949374 G C 250.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=-2.031;SB=-8.297e+01;SOR=0.446;VQSLOD=8.64;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:3,10:13:91:279,0,91 1 31761989 rs1532859 G A 586.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-1.513e+02;SOR=2.531;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:45:615,45,0 1 31762374 rs1532858 C T 496.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.043;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.065;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=0.700;SB=-2.950e+02;SOR=0.963;VQSLOD=6.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,23:53:99:525,0,787 1 31764693 rs12135540 G A 757.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.538;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=-1.040;SB=0.00;SOR=0.941;VQSLOD=10.10;culprit=FS GT:AD:DP:GQ:PL 0/1:19,24:43:99:786,0,580 1 31764713 rs372600171 C CAAG 1603.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;DB;DP=52;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=30.84;RPA=1,2;RU=AAG;ReadPosRankSum=0.463;SB=-1.764e+00;SOR=2.191;STR;VQSLOD=3.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,30:52:99:1641,0,1131 1 31764930 rs10733007 T C 2039.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.00;SB=-3.940e+02;SOR=3.113;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:2068,154,0 1 31765968 rs1546375 C T 403.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.323;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.835;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=1.410;SB=-2.260e+02;SOR=0.350;VQSLOD=9.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,17:40:99:432,0,619 1 31792141 rs4949384 A G 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.639;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.141;SB=-2.901e+01;SOR=0.582;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:241,0,267 1 31840426 rs2271072 C G 351.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.79;ReadPosRankSum=1.141;SB=-2.501e+01;SOR=0.446;VQSLOD=9.27;culprit=QD GT:AD:DP:GQ:PL 0/1:27,13:40:99:380,0,974 1 31882330 rs1018164 T G 584.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.83;SB=-3.577e+01;SOR=4.174;VQSLOD=5.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:45:613,45,0 1 31882582 rs67428379 G GGCCTCA 2675.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;DB;DP=68;ExcessHet=3.0103;FS=6.456;MLEAC=1;MLEAF=0.500;MQ=60.16;MQ0=0;MQRankSum=1.090;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.67;ReadPosRankSum=1.635;SB=-9.390e+02;SOR=1.473;VQSLOD=0.246;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,32:68:99:2713,0,2927 1 31883295 rs6701521 T C 506.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.174;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=3.954;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.59;ReadPosRankSum=-1.017;SB=-3.070e+02;SOR=0.287;VQSLOD=9.62;culprit=QD GT:AD:DP:GQ:PL 0/1:39,20:59:99:535,0,1008 1 31886163 rs12042883 C T 313.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.196;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=0.150;SB=-2.110e+02;SOR=0.818;VQSLOD=10.21;culprit=FS GT:AD:DP:GQ:PL 0/1:4,15:19:56:342,0,56 1 31886750 rs140573994 G GTCCC 398.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.28;MQ0=0;MQRankSum=1.408;QD=24.92;RPA=1,2;RU=TCCC;ReadPosRankSum=-1.363;SB=-6.000e+01;SOR=1.085;STR;VQSLOD=1.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,7:14:99:436,0,300 1 31898132 rs4949400 T C 609.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.739;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.015;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.00;ReadPosRankSum=0.729;SB=-2.830e+02;SOR=0.531;VQSLOD=9.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,26:61:99:638,0,952 1 31898234 rs4949402 T C 578.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.394;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.022;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.33;ReadPosRankSum=0.972;SB=-2.870e+02;SOR=0.963;VQSLOD=7.38;culprit=QD GT:AD:DP:GQ:PL 0/1:40,22:62:99:607,0,923 1 31898279 rs4949403 A C 556.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.861;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-1.989;SB=-2.610e+02;SOR=0.458;VQSLOD=9.19;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:28,23:51:99:585,0,779 1 31898536 rs2275435 C T 154.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=-0.303;SB=-3.100e+01;SOR=2.303;VQSLOD=6.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,6:10:98:183,0,98 1 31899684 rs10454445 A T 482.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-7.097e+01;SOR=3.126;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:511,39,0 1 31899704 rs10454446 C T 329.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=-2.677e+01;SOR=3.258;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:358,27,0 1 31902418 rs10047085 A G 582.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.968;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-0.832;SB=-2.190e+02;SOR=0.283;VQSLOD=10.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,22:47:99:611,0,685 1 31905730 rs7547845 T C 486.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.00;SB=0.00;SOR=5.283;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:515,39,0 1 31905889 rs33956499 A ACAG 2303.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQ0=0;MQRankSum=1.104;POSITIVE_TRAIN_SITE;QD=23.04;RPA=5,6;RU=CAG;ReadPosRankSum=0.768;SB=-9.300e+02;SOR=0.681;STR;VQSLOD=2.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,46:107:99:2341,0,2576 1 31906882 rs11587589 A G 2107.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.11;SB=-1.163e+03;SOR=1.011;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2136,163,0 1 31907102 rs7417775 A G 893.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SB=-1.105e+02;SOR=3.611;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:69:922,69,0 1 31971701 rs34676143 GC G 564.73 PASS AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;RPA=4,3;RU=C;SB=-8.397e+01;SOR=3.258;STR;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:602,48,0 1 31971707 . G A 607.77 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;QD=33.76;SB=-6.797e+01;SOR=3.500;VQSLOD=5.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:48:636,48,0 1 32044568 rs12750545 C T 564.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.48;SB=0.00;SOR=5.670;VQSLOD=7.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:593,48,0 1 32044589 rs12736080 T C 779.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.01;SB=0.00;SOR=6.184;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:808,60,0 1 32044595 rs12750558 C G 924.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=0.00;SOR=6.358;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:953,69,0 1 32044607 rs28402919 G C 1025.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=30.03;SB=-7.797e+01;SOR=4.479;VQSLOD=4.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:78:1054,78,0 1 32044609 rs28520749 G A 949.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=31.66;SB=-7.297e+01;SOR=4.548;VQSLOD=5.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:78:978,78,0 1 32044641 rs12753402 G A 1556.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=31.77;SB=-3.540e+02;SOR=2.655;VQSLOD=5.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1585,117,0 1 32044925 rs79834674 G T 1205.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=0.609;SB=-2.330e+02;SOR=0.565;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:35,42:77:99:1234,0,1042 1 32050203 rs78461805 C A 68.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.29;ReadPosRankSum=1.366;SB=-2.302e+01;SOR=1.329;VQSLOD=7.91;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:97:97,0,226 1 32085485 rs11575883 G A 192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=6.786;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.88;ReadPosRankSum=-0.360;SB=-1.410e+02;SOR=0.105;VQSLOD=7.96;culprit=QD GT:AD:DP:GQ:PL 0/1:18,10:28:99:221,0,613 1 32086912 rs2280386 A C 274.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=-0.228;SB=-1.410e+02;SOR=0.418;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:303,0,147 1 32090725 rs41527749 C T 638.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.212;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.177;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=-1.213;SB=-4.210e+02;SOR=0.674;VQSLOD=5.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,30:59:99:667,0,798 1 32092525 rs2271933 A G 709.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.661;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-0.779;SB=-2.970e+02;SOR=1.176;VQSLOD=7.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,28:54:99:738,0,661 1 32092610 rs41263963 G A 574.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.886;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.651;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.96;ReadPosRankSum=-0.595;SB=-1.360e+02;SOR=1.270;VQSLOD=6.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,19:32:99:603,0,329 1 32096722 rs139182246 C T 118.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=6.039;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.60;ReadPosRankSum=1.036;SB=-1.352e-01;SOR=2.833;VQSLOD=5.17;culprit=QD GT:AD:DP:GQ:PL 0/1:13,5:18:99:147,0,325 1 32096746 rs10914458 T C 139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=-1.071;SB=-1.765e+00;SOR=1.179;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:8,5:13:99:168,0,247 1 32100551 rs3835520 GA G 585.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.389;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.64;RPA=5,4;RU=A;ReadPosRankSum=0.055;SB=-2.170e+02;SOR=0.730;STR;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:17,23:46:99:623,0,454 1 32110574 rs41263965 G A 1640.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.616;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=1.478;HaplotypeScore=6.0040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=0.379;SB=-7.700e+02;SOR=0.508;VQSLOD=8.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,67:127:99:1669,0,1462 1 32118160 rs1061392 C A 510.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.111;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=6.498;HaplotypeScore=6.7423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.51;ReadPosRankSum=-1.271;SB=-6.900e+01;SOR=1.802;VQSLOD=5.23;culprit=FS GT:AD:DP:GQ:PL 0/1:40,20:60:99:539,0,1163 1 32119347 . A AAC 704.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793;DP=50;ExcessHet=3.0103;FS=6.321;MLEAC=1;MLEAF=0.500;MQ=59.49;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.66;RPA=14,15;RU=AC;ReadPosRankSum=-0.569;SB=-3.660e+02;SOR=0.211;STR;VQSLOD=8.88;culprit=FS GT:AD:DP:GQ:PL 0/1:24,21:50:99:742,0,790 1 32122164 rs7545321 A G 450.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.20;SB=-7.497e+01;SOR=2.985;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:479,36,0 1 32122779 rs75640130 C T 349.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.564;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=6.576;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-2.205;SB=-1.185e+02;SOR=0.044;VQSLOD=8.75;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:12,13:25:99:378,0,369 1 32124597 rs16834652 A G 914.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.963;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=10.438;HaplotypeScore=1.9329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-0.354;SB=-6.260e+02;SOR=0.525;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 0/1:28,42:70:99:943,0,817 1 32126070 rs11807560 C T 481.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.125;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.478;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=0.122;SB=-1.730e+02;SOR=0.394;VQSLOD=10.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,19:40:99:510,0,637 1 32127911 rs2271927 C T 388.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.746;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.391;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=0.528;SB=-2.510e+02;SOR=0.191;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 0/1:18,17:35:99:417,0,555 1 32127953 rs2271928 G A 467.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.427;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=19.456;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.278;SB=-2.700e+02;SOR=0.025;VQSLOD=3.26;culprit=FS GT:AD:DP:GQ:PL 0/1:20,18:38:99:496,0,687 1 32128140 rs75145224 T C 349.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-0.612;SB=-2.160e+02;SOR=0.551;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:14,15:29:99:378,0,376 1 32131163 rs1356803 C G 1350.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.376;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=-0.108;SB=-8.750e+02;SOR=0.697;VQSLOD=8.90;culprit=FS GT:AD:DP:GQ:PL 0/1:55,53:108:99:1379,0,1429 1 32131295 . C CGG 332.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;DP=39;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.80;RPA=8,10;RU=G;ReadPosRankSum=-1.029;SB=-8.200e+01;SOR=0.307;STR;VQSLOD=8.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,10:39:99:370,0,637 1 32133891 rs41312022 G A 1150.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.236;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=2.783;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-1.260;SB=-4.530e+02;SOR=0.994;VQSLOD=7.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,47:97:99:1179,0,1367 1 32134491 rs2271929 C G 631.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;SB=-2.211e+02;SOR=1.828;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:48:660,48,0 1 32136168 rs2292990 G C 1322.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-5.020e+02;SOR=1.609;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1351,99,0 1 32136398 rs1474182 G A 299.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.489;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.347;SB=-6.400e+01;SOR=1.148;VQSLOD=10.10;culprit=FS GT:AD:DP:GQ:PL 0/1:12,12:24:99:328,0,350 1 32136413 rs75826603 G A 312.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.162;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-0.709;SB=-9.800e+01;SOR=0.446;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:11,12:23:99:341,0,316 1 32138561 rs141225372 C T 70.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.08;ReadPosRankSum=0.000;SB=-3.100e+01;SOR=0.892;VQSLOD=8.36;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:99:99,0,181 1 32140733 rs2292993 C T 1829.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.709;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.672;HaplotypeScore=1.9970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=0.739;SB=-8.590e+02;SOR=0.798;VQSLOD=8.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,66:128:99:1858,0,1811 1 32145009 rs4949461 C T 2777.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-1.249e+03;SOR=1.389;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:2806,208,0 1 32146425 rs11590964 C T 558.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=1.016;SB=-1.960e+02;SOR=0.608;VQSLOD=10.15;culprit=FS GT:AD:DP:GQ:PL 0/1:19,21:40:99:587,0,515 1 32146764 rs2297684 C T 277.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.509;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=1.7337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=-1.157;SB=-1.765e+00;SOR=2.494;VQSLOD=6.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,9:16:99:306,0,150 1 32148571 rs10737358 A G 2111.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.93;SB=-1.152e+03;SOR=1.179;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2140,163,0 1 32151158 rs200869683 G C 80.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.05;ReadPosRankSum=1.397;SB=-1.765e+00;SOR=0.527;VQSLOD=6.74;culprit=QD GT:AD:DP:GQ:PL 0/1:12,4:16:99:109,0,304 1 32156869 rs10798884 A T 5582.77 PASS AC=2;AF=1.00;AN=2;DB;DP=186;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=-3.417e+03;SOR=0.759;VQSLOD=4.29;culprit=DP GT:AD:DP:GQ:PL 1/1:0,186:186:99:5611,409,0 1 32156940 rs2297680 C A 2254.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.564;DB;DP=175;Dels=0.00;ExcessHet=3.0103;FS=2.665;HaplotypeScore=9.0416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=0.426;SB=-1.262e+03;SOR=0.917;VQSLOD=7.54;culprit=DP GT:AD:DP:GQ:PL 0/1:82,93:175:99:2283,0,2217 1 32157009 rs2297679 G T 1657.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.258;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=3.129;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=-1.342;SB=-6.990e+02;SOR=1.020;VQSLOD=7.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:74,62:136:99:1686,0,2018 1 32158304 rs2297675 A G 3038.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;DB;DP=218;Dels=0.00;ExcessHet=3.0103;FS=0.498;HaplotypeScore=10.7556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=-0.747;SB=-1.930e+03;SOR=0.656;VQSLOD=7.17;culprit=DP GT:AD:DP:GQ:PL 0/1:92,125:218:99:3067,0,2456 1 32158374 rs3818788 T C 2575.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;DB;DP=191;Dels=0.00;ExcessHet=3.0103;FS=1.125;HaplotypeScore=6.5561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-0.502;SB=-1.523e+03;SOR=0.612;VQSLOD=7.71;culprit=DP GT:AD:DP:GQ:PL 0/1:92,99:191:99:2604,0,2339 1 32159588 rs2275097 A C 561.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.001;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=-0.353;SB=-3.230e+02;SOR=0.874;VQSLOD=8.93;culprit=FS GT:AD:DP:GQ:PL 0/1:29,27:56:99:590,0,807 1 32162645 . A T 1109.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.789;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.33;ReadPosRankSum=1.623;SB=-6.840e+02;SOR=0.693;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 0/1:45,45:90:99:1138,0,1191 1 32163950 rs2297674 G C 867.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.283;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=0.314;SB=-4.570e+02;SOR=0.522;VQSLOD=5.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,28:47:99:896,0,617 1 32164206 rs2228550 T G 980.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.460;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=2.031;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=0.281;SB=-2.940e+02;SOR=1.038;VQSLOD=7.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,35:77:99:1009,0,1058 1 32165495 rs2228552 G T 595.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.998;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=0.765;SB=-1.910e+02;SOR=0.824;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:34,23:57:99:624,0,876 1 32167526 rs1815465 G C 2138.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.07;SB=-2.830e+02;SOR=3.575;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:2167,163,0 1 32193647 rs1127100 T C 549.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=-1.145;SB=-2.160e+02;SOR=0.784;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:15,22:37:99:578,0,377 1 32196647 rs909001 C G 304.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.970;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=5.179;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.93;ReadPosRankSum=0.198;SB=-5.700e+01;SOR=1.781;VQSLOD=5.26;culprit=QD GT:AD:DP:GQ:PL 0/1:32,12:44:99:333,0,830 1 32203163 rs2271931 C G 1649.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.456;SB=-8.960e+02;SOR=0.682;VQSLOD=8.90;culprit=FS GT:AD:DP:GQ:PL 0/1:67,58:125:99:1678,0,1811 1 32207581 rs2297600 T G 2195.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.583;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=0.828;SB=-1.287e+03;SOR=0.629;VQSLOD=7.14;culprit=DP GT:AD:DP:GQ:PL 0/1:87,86:173:99:2224,0,2151 1 32221913 rs4949223 G A 1746.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.960;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=1.405;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=-0.411;SB=-1.043e+03;SOR=0.786;VQSLOD=7.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,68:127:99:1775,0,1443 1 32266026 rs552124 A G 3633.77 PASS AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.17;SB=-2.405e+03;SOR=0.772;VQSLOD=5.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,129:129:99:3662,271,0 1 32280610 rs6664445 T C 1884.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.011;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=7.676;HaplotypeScore=2.5676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=0.192;SB=-1.158e+03;SOR=0.288;VQSLOD=7.59;culprit=FS GT:AD:DP:GQ:PL 0/1:42,70:112:99:1913,0,1069 1 32502430 rs3738002 T A 805.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.143;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-0.666;SB=-2.210e+02;SOR=0.693;VQSLOD=8.82;culprit=FS GT:AD:DP:GQ:PL 0/1:30,30:60:99:834,0,798 1 32538782 rs2296450 G A 127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.0782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=0.703;SB=0.00;SOR=1.179;VQSLOD=10.31;culprit=FS GT:AD:DP:GQ:PL 0/1:3,5:10:90:156,0,90 1 32542507 rs4317856 C A 519.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.020;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-0.113;SB=-1.765e+00;SOR=1.453;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:21,18:39:99:548,0,686 1 32557486 rs744455 A G 1783.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.831;DB;DP=186;Dels=0.00;ExcessHet=3.0103;FS=8.794;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=-0.925;SB=-9.520e+02;SOR=1.052;VQSLOD=2.36;culprit=DP GT:AD:DP:GQ:PL 0/1:112,74:186:99:1812,0,3007 1 32557673 rs744454 C T 1499.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.188;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=2.832;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=0.116;SB=-5.130e+02;SOR=1.025;VQSLOD=7.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,53:99:99:1528,0,1146 1 32623108 rs41311207 A G 426.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.291;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=0.759;SB=-2.010e+02;SOR=0.582;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:24,19:43:99:455,0,601 1 32631616 rs201666769 C A 281.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.6812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.06;ReadPosRankSum=0.816;SB=-1.765e+00;SOR=0.914;VQSLOD=7.85;culprit=FS GT:AD:DP:GQ:PL 0/1:18,10:28:99:310,0,563 1 32631637 rs72666768 C A 404.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.512;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=-0.148;SB=-6.500e+01;SOR=0.399;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:22,16:38:99:433,0,605 1 32646722 . T TA 553.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.066;DP=47;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.31;RPA=10,11;RU=A;ReadPosRankSum=-0.950;SB=-2.070e+02;SOR=1.027;STR;VQSLOD=6.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,27:47:99:591,0,339 1 32647307 rs72666776 T G 551.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.865;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=-1.185;SB=-1.640e+02;SOR=0.836;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:18,20:38:99:580,0,478 1 32655957 rs10551696 TTCC T 1046.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;DB;DP=85;ExcessHet=3.0103;FS=2.649;MLEAC=1;MLEAF=0.500;MQ=60.25;MQ0=0;MQRankSum=1.908;POSITIVE_TRAIN_SITE;QD=15.86;RPA=5,4;RU=TCC;ReadPosRankSum=0.513;SB=-1.770e+02;SOR=1.247;STR;VQSLOD=0.396;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,24:85:99:1084,0,2170 1 32658062 rs55879873 G GGT 1979.73 PASS AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;RPA=1,2;RU=GT;SB=-6.440e+02;SOR=1.609;STR;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:46:99:2017,120,0 1 32658447 rs16834916 G A 335.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.326;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-0.054;SB=0.00;SOR=0.622;VQSLOD=10.28;culprit=FS GT:AD:DP:GQ:PL 0/1:13,12:25:99:364,0,457 1 32661059 rs16834922 T C 730.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.626;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.022;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=1.050;SB=-2.540e+02;SOR=0.869;VQSLOD=7.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,27:59:99:759,0,860 1 32671030 rs2295116 C T 627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.712;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=-0.591;SB=-2.450e+02;SOR=0.487;VQSLOD=10.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,25:44:99:656,0,409 1 32671065 rs2295117 A C 387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.590;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.704;SB=-7.301e+01;SOR=0.368;VQSLOD=10.09;culprit=FS GT:AD:DP:GQ:PL 0/1:13,14:27:99:416,0,369 1 32672784 rs56663136 G C 1468.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.475;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=6.533;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-0.807;SB=-7.710e+02;SOR=0.684;VQSLOD=3.20;culprit=FS GT:AD:DP:GQ:PL 0/1:90,53:143:99:1497,0,2494 1 32672785 rs60559680 A T 1522.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.504;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=6.409;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=-1.058;SB=-7.430e+02;SOR=0.639;VQSLOD=3.24;culprit=FS GT:AD:DP:GQ:PL 0/1:89,54:143:99:1551,0,2404 1 32672908 rs3903683 T G 1964.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.706;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=2.098;HaplotypeScore=2.6626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=0.535;SB=-1.227e+03;SOR=0.830;VQSLOD=7.94;culprit=DP GT:AD:DP:GQ:PL 0/1:65,78:143:99:1993,0,1783 1 32682962 rs41311189 C A 1172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.356;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=2.043;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-0.839;SB=-3.630e+02;SOR=1.134;VQSLOD=7.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,42:77:99:1201,0,1017 1 32686594 rs3738001 A G 88.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.492;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.34;ReadPosRankSum=0.283;SB=0.00;SOR=0.188;VQSLOD=9.84;culprit=QD GT:AD:DP:GQ:PL 0/1:10,4:14:99:117,0,346 1 32687777 rs17523023 A G 382.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.352;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=6.232;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=1.046;SB=-5.150e-01;SOR=2.694;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 0/1:16,12:28:99:411,0,471 1 32689521 rs16834931 A G 1427.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.969;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=3.482;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=0.430;SB=-4.260e+02;SOR=1.161;VQSLOD=6.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,46:75:99:1456,0,809 1 32689857 rs589034 A G 2040.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.01;SB=-1.087e+03;SOR=0.906;VQSLOD=6.47;culprit=DP GT:AD:DP:GQ:PL 1/1:0,60:60:99:2069,154,0 1 32691617 rs72666791 G C 213.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=-0.433;SB=-1.765e+00;SOR=1.828;VQSLOD=8.12;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:242,0,208 1 32694003 rs183371789 C G 1295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.915;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=6.642;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-0.531;SB=-1.740e+02;SOR=1.544;VQSLOD=5.34;culprit=FS GT:AD:DP:GQ:PL 0/1:61,48:109:99:1324,0,1719 1 32694819 rs72666792 A G 516.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.932;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.76;ReadPosRankSum=0.293;SB=-2.150e+02;SOR=0.818;VQSLOD=8.65;culprit=QD GT:AD:DP:GQ:PL 0/1:38,21:59:99:545,0,927 1 32713396 . G A 296.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.20;ReadPosRankSum=-0.284;SB=0.00;SOR=1.765;VQSLOD=7.84;culprit=FS GT:AD:DP:GQ:PL 0/1:4,10:14:99:325,0,122 1 32860161 rs547329 T C 964.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.46;SB=-1.145e+02;SOR=3.767;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:75:993,75,0 1 33065947 rs704886 G C 3329.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-1.387e+03;SOR=1.632;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3358,241,0 1 33099798 rs704877 A G 260.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.219;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-0.770;SB=-1.140e+02;SOR=0.495;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:11,12:23:99:289,0,289 1 33133968 rs2762904 T C 1071.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-5.760e+02;SOR=1.022;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:78:1100,78,0 1 33134774 rs359955 A C 190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.63;ReadPosRankSum=0.737;SB=-1.040e+02;SOR=0.459;VQSLOD=9.27;culprit=QD GT:AD:DP:GQ:PL 0/1:16,9:25:99:219,0,438 1 33134989 rs359956 A G 514.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.09;SB=-2.680e+02;SOR=1.022;VQSLOD=5.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:39:543,39,0 1 33138516 rs607202 A C 1026.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.016;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.02;ReadPosRankSum=0.091;SB=-6.100e+02;SOR=0.655;VQSLOD=8.80;culprit=FS GT:AD:DP:GQ:PL 1/1:1,37:38:75:1055,75,0 1 33138605 rs1320511 T C 715.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.08;SB=-1.583e+02;SOR=2.636;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:744,54,0 1 33139043 rs55707864 C T 205.03 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=61.94;MQ0=0;MQRankSum=0.707;QD=18.64;ReadPosRankSum=-0.318;SB=-1.451e+02;SOR=0.223;VQSLOD=1.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:1,10:11:12:233,0,12 1 33139044 rs67836314 T TC 276.73 PASS AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.94;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.16;SB=-1.292e+02;SOR=0.859;VQSLOD=3.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:32:314,32,0 1 33160878 rs360042 C T 3707.77 PASS AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3701;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.96;SB=-1.621e+03;SOR=1.453;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,116:116:99:3736,274,0 1 33161212 rs360041 T C 2875.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.31;SB=-1.192e+03;SOR=1.338;VQSLOD=7.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2904,217,0 1 33161806 rs360040 C T 393.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.11;SB=0.00;SOR=4.977;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:422,33,0 1 33233237 rs360524 G A 392.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=0.00;SOR=4.977;VQSLOD=8.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:421,33,0 1 33233323 rs360523 A G 1016.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=-3.090e+02;SOR=2.165;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:78:1045,78,0 1 33234110 rs111335810 C T 55.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.65;ReadPosRankSum=-1.419;SB=0.00;SOR=0.693;VQSLOD=8.65;culprit=QD GT:AD:DP:GQ:PL 0/1:6,6:12:84:84,0,220 1 33234136 rs360522 T C 711.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.89;SB=-7.497e+01;SOR=3.816;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:740,54,0 1 33234153 rs3737993 G A 428.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.419;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-0.262;SB=-5.800e+01;SOR=0.770;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:14,15:29:99:457,0,346 1 33276424 rs4951787 G A 2633.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.35;SB=-1.406e+03;SOR=0.741;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2662,208,0 1 33293748 rs10753266 T C 647.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.14;SB=-4.076e+01;SOR=4.407;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:676,51,0 1 33299816 rs4951773 A T 854.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.19;SB=-1.135e+02;SOR=3.528;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:883,69,0 1 33318561 rs702836 T C 2485.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-7.260e+02;SOR=2.103;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2514,184,0 1 33318634 rs785274 G A 4723.77 PASS AC=2;AF=1.00;AN=2;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=-2.470e+03;SOR=1.143;VQSLOD=5.02;culprit=DP GT:AD:DP:GQ:PL 1/1:0,158:158:99:4752,346,0 1 33318868 rs67729924 C CATTTGAGGTCAGGA 2450.73 PASS AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=63.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.94;SB=-1.822e+02;SOR=3.912;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:2488,45,0 1 33330432 rs1284368 A G 3771.77 PASS AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6795;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-1.454e+03;SOR=1.765;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,126:126:99:3800,277,0 1 33402334 . G GA 61.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=0.000;QD=3.25;RPA=17,18;RU=A;ReadPosRankSum=0.834;SB=-1.514e+01;SOR=0.784;STR;VQSLOD=7.30;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:21:99:99,0,222 1 33407693 rs194643 G A 253.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.52;ReadPosRankSum=1.056;SB=0.00;SOR=1.609;VQSLOD=9.21;culprit=FS GT:AD:DP:GQ:PL 0/1:4,9:13:99:282,0,117 1 33409551 rs194644 C T 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.639;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=0.888;SB=0.00;SOR=0.321;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:12,7:19:99:202,0,434 1 33409693 rs194645 G A 806.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=4.738;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=-0.930;SB=-5.190e+02;SOR=0.315;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 0/1:35,34:69:99:835,0,901 1 33478602 rs114140319 C A 391.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.511;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=0.677;SB=0.00;SOR=1.292;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:7,12:19:99:420,0,225 1 33497070 rs1012884 G A 1906.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-3.740e+02;SOR=3.037;VQSLOD=8.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1935,144,0 1 33560338 rs804428 A G 1923.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-5.090e+02;SOR=2.303;VQSLOD=7.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1952,144,0 1 33567592 rs78742377 G C 655.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.387;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=1.197;SB=-2.090e+02;SOR=0.412;VQSLOD=9.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,25:48:99:684,0,677 1 33641932 rs604941 A G 2955.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.59;SB=-1.228e+03;SOR=1.455;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2984,214,0 1 33642152 rs643402 C T 1053.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=-2.311e+02;SOR=2.833;VQSLOD=6.38;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,33:33:81:1082,81,0 1 33646950 rs622407 A G 1286.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-6.560e+02;SOR=1.022;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:96:1315,96,0 1 33742228 rs4475712 T C 337.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.78;SB=0.00;SOR=4.804;VQSLOD=8.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:366,30,0 1 33760743 rs4641276 T C 1502.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4533;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.97;SB=-7.000e+02;SOR=1.378;VQSLOD=7.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1531,111,0 1 33794853 rs7551448 A G 417.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.29;SB=0.00;SOR=4.977;VQSLOD=3.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:446,33,0 1 33795572 rs10914684 G A 454.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=-3.876e+01;SOR=3.767;VQSLOD=8.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:483,36,0 1 33795590 rs10914685 A T 546.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.34;SB=-1.165e+02;SOR=2.531;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:45:575,45,0 1 33796834 rs34504596 GA G 1206.73 PASS AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.17;RPA=2,1;RU=A;SB=-1.873e+02;SOR=3.258;STR;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:84:1244,84,0 1 33833210 rs185861601 A T 478.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.882;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.95;ReadPosRankSum=-0.795;SB=-3.976e+01;SOR=0.756;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:7,17:24:99:507,0,193 1 33833211 rs190223154 G A 550.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.033;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.95;ReadPosRankSum=-1.577;SB=-3.976e+01;SOR=0.906;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 0/1:6,17:23:99:579,0,165 1 33944993 rs41265901 A G 1836.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.018;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.628;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-1.087;SB=-9.650e+02;SOR=0.799;VQSLOD=7.89;culprit=DP GT:AD:DP:GQ:PL 0/1:73,68:141:99:1865,0,2025 1 33954469 rs3838985 AG A 612.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQ0=0;MQRankSum=0.756;POSITIVE_TRAIN_SITE;QD=26.64;RPA=2,1;RU=G;ReadPosRankSum=-0.769;SB=-4.576e+01;SOR=0.693;STR;VQSLOD=3.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,16:23:99:650,0,244 1 33956890 rs41265905 T C 2093.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.514;DB;DP=178;Dels=0.00;ExcessHet=3.0103;FS=4.349;HaplotypeScore=1.8561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-1.051;SB=-1.357e+03;SOR=0.446;VQSLOD=5.99;culprit=DP GT:AD:DP:GQ:PL 0/1:89,88:178:99:2122,0,2468 1 33957152 rs4403594 T G 3215.74 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.81;SB=-1.898e+03;SOR=0.734;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:3244,238,0 1 33960062 rs9943259 A G 1025.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.486;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=7.612;HaplotypeScore=2.8798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=-0.107;SB=-5.490e+02;SOR=0.899;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 0/1:36,41:77:99:1054,0,976 1 33961147 rs3795420 T G 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.635;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.94;ReadPosRankSum=-0.965;SB=-6.500e+01;SOR=0.986;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:12,8:20:99:207,0,253 1 33985353 rs2641959 C G 2295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.459;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=3.483;HaplotypeScore=4.7714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.203;SB=-1.223e+03;SOR=0.657;VQSLOD=7.40;culprit=DP GT:AD:DP:GQ:PL 0/1:87,86:173:99:2324,0,2528 1 33999174 rs35879676 GT G 852.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.689;DB;DP=82;ExcessHet=3.0103;FS=1.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.40;RPA=6,5;RU=T;ReadPosRankSum=2.293;SB=-2.530e+02;SOR=0.965;STR;VQSLOD=6.50;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:45,37:82:99:890,0,1219 1 34003368 rs2641954 G A 234.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.814;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=0.802;SB=-3.401e+01;SOR=0.392;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:13,9:22:99:263,0,450 1 34033512 rs6703172 G C 2494.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.40;SB=-1.358e+03;SOR=0.948;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2523,184,0 1 34033636 rs66808281 G A 976.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-3.180e+02;SOR=1.911;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:75:1005,75,0 1 34043169 rs11291100 TC T 1581.73 PASS AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;RPA=7,6;RU=C;SB=-5.060e+02;SOR=1.714;STR;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:50:99:1619,135,0 1 34046646 rs292808 C A 96.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=-1.579;SB=-1.765e+00;SOR=1.329;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:125,0,180 1 34052272 rs16835645 C T 997.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.322;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.520;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=-2.805;SB=-3.090e+02;SOR=1.259;VQSLOD=5.94;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:24,38:62:99:1026,0,607 1 34052305 rs12727575 C T 377.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.407;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.645;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.154;SB=-2.302e+01;SOR=1.981;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 0/1:16,13:29:99:406,0,402 1 34052605 rs7526990 A G 80.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.870;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.77;ReadPosRankSum=1.699;SB=-1.765e+00;SOR=0.693;VQSLOD=8.71;culprit=QD GT:AD:DP:GQ:PL 0/1:10,4:14:99:109,0,322 1 34070826 rs12733436 G A 121.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.61;ReadPosRankSum=-1.309;SB=-1.765e+00;SOR=0.784;VQSLOD=9.66;culprit=QD GT:AD:DP:GQ:PL 0/1:11,5:16:99:150,0,357 1 34071434 rs1874044 C T 629.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.515;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=3.998;HaplotypeScore=3.7636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-0.338;SB=-3.570e+02;SOR=0.307;VQSLOD=10.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,26:54:99:658,0,747 1 34071525 rs1874045 C T 794.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.434;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.932;HaplotypeScore=3.7244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=-0.474;SB=-4.690e+02;SOR=0.529;VQSLOD=9.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,31:68:99:823,0,1046 1 34158472 rs12757315 C T 1332.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.411;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=1.033;SB=-4.830e+02;SOR=0.554;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:44,53:97:99:1361,0,1197 1 34158482 rs12757320 C T 1322.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.591;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=1.747;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.431;SB=-5.340e+02;SOR=0.493;VQSLOD=9.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,56:104:99:1351,0,1291 1 34164286 rs1887918 A G 191.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.163;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=-0.408;SB=-1.765e+00;SOR=1.136;VQSLOD=9.88;culprit=FS GT:AD:DP:GQ:PL 0/1:11,7:18:99:220,0,340 1 34189552 rs667892 C T 224.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.260;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=0.145;SB=-1.765e+00;SOR=1.071;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:13,8:21:99:253,0,426 1 34189917 rs519370 C T 3023.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-9.310e+02;SOR=2.208;VQSLOD=5.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:3052,235,0 1 34189957 rs11346874 AG A 2475.73 PASS AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.74;RPA=4,3;RU=G;SB=-3.620e+02;SOR=3.477;STR;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:69:99:2513,193,0 1 34190444 rs76533301 G A 320.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.799;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.342;SB=-3.401e+01;SOR=0.495;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:15,12:27:99:349,0,514 1 34191973 rs77713334 C G 150.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=0.319;SB=-7.300e+01;SOR=1.022;VQSLOD=9.91;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:64:179,0,64 1 34205134 rs12117137 C T 143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-0.200;SB=-1.765e+00;SOR=1.911;VQSLOD=8.39;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:172,0,129 1 34270498 rs10737374 G A 2530.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.76;SB=-1.286e+03;SOR=1.312;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2559,190,0 1 34276210 . T TA 154.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.74;RPA=10,11;RU=A;ReadPosRankSum=-0.380;SB=0.00;SOR=0.527;STR;VQSLOD=9.64;culprit=QD GT:AD:DP:GQ:PL 0/1:11,9:20:99:192,0,225 1 34285342 rs17342512 G A 1447.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.715;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=2.352;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-0.781;SB=-9.330e+02;SOR=0.482;VQSLOD=9.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,57:120:99:1476,0,1738 1 34285381 rs11578857 C T 1609.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.176;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=1.390;SB=-8.090e+02;SOR=0.725;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:68,61:130:99:1638,0,1966 1 34285995 rs3795414 G A 190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.096;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=6.831;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.81;ReadPosRankSum=-1.512;SB=-1.360e+02;SOR=0.116;VQSLOD=7.52;culprit=QD GT:AD:DP:GQ:PL 0/1:18,10:28:99:219,0,556 1 34286166 . CAA C 402.27 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.76;RPA=23,21;RU=A;ReadPosRankSum=1.008;SB=-1.013e+02;SOR=0.380;STR;VQSLOD=8.30;culprit=FS GT:AD:DP:GQ:PL 0/1:4,20:34:1:437,0,1 1 34286189 rs3843294 A C 968.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.991;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.41;ReadPosRankSum=1.735;SB=-4.276e+01;SOR=3.750;VQSLOD=4.09;culprit=FS GT:AD:DP:GQ:PL 1/1:1,28:29:75:997,75,0 1 34329897 rs911218 T C 2184.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-7.490e+02;SOR=1.917;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2213,163,0 1 34330067 rs10379 A C 5566.77 PASS AC=2;AF=1.00;AN=2;DB;DP=178;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-2.925e+03;SOR=1.116;VQSLOD=6.32;culprit=DP GT:AD:DP:GQ:PL 1/1:0,178:178:99:5595,400,0 1 34631101 rs297789 C T 477.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.96;SB=0.00;SOR=5.283;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:506,39,0 1 34643837 rs750572 A G 819.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.417;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.844;HaplotypeScore=3.8929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-0.557;SB=-1.110e+02;SOR=1.385;VQSLOD=7.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,28:61:99:848,0,912 1 34684463 rs705207 G A 805.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=-3.840e+02;SOR=1.382;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:60:834,60,0 1 35184033 rs693582 C T 673.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.193;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.285;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=0.185;SB=-1.420e+02;SOR=1.072;VQSLOD=6.90;culprit=QD GT:AD:DP:GQ:PL 0/1:47,27:74:99:702,0,1247 1 35184084 rs693852 C T 290.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.858;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.729;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.65;ReadPosRankSum=-0.092;SB=-9.600e+01;SOR=0.330;VQSLOD=9.03;culprit=QD GT:AD:DP:GQ:PL 0/1:25,13:38:99:319,0,808 1 35184172 . A T 60.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.08;ReadPosRankSum=0.189;SB=0.00;SOR=0.223;VQSLOD=6.73;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:89:89,0,237 1 35321684 . A AT 67.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.47;RPA=15,16;RU=T;ReadPosRankSum=0.992;SB=0.00;SOR=1.179;STR;VQSLOD=9.14;culprit=QD GT:AD:DP:GQ:PL 0/1:3,5:14:32:105,0,32 1 35332926 rs1001616 G C 437.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.919;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=1.104;SB=-2.740e+02;SOR=0.503;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:17,17:34:99:466,0,546 1 35442313 rs12404674 T A 1884.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=-6.720e+02;SOR=1.238;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1913,147,0 1 35449238 rs59029078 G A 685.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.44;SB=-1.573e+02;SOR=2.419;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:714,57,0 1 35449270 . G GA 802.73 PASS AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.73;RPA=6,7;RU=A;SB=-2.290e+02;SOR=2.066;STR;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:81:840,81,0 1 35457656 rs12078105 G C 935.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.12;SB=0.00;SOR=6.439;VQSLOD=7.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:25:72:964,72,0 1 35469361 rs7529201 A G 997.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.24;SB=-1.623e+02;SOR=3.611;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:84:1026,84,0 1 35469786 rs7531831 A T 757.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.14;SB=-4.810e+02;SOR=0.846;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:57:786,57,0 1 35470650 rs368728551 A ACT 1630.73 PASS AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;RPA=1,2;RU=CT;SB=-1.685e+02;SOR=4.047;STR;VQSLOD=5.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:96:1668,96,0 1 35470877 rs10158284 A T 1542.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.57;SB=-6.360e+02;SOR=1.697;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1571,117,0 1 35472782 rs77203730 G A 497.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.234;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.051;HaplotypeScore=7.2833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-0.710;SB=-1.593e+02;SOR=0.250;VQSLOD=9.54;culprit=SOR GT:AD:DP:GQ:PL 0/1:12,19:32:99:526,0,366 1 35475943 rs9919282 C G 1212.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.88;SB=-7.897e+01;SOR=4.112;VQSLOD=4.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:90:1241,90,0 1 35480162 rs3820462 A G 378.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.11;SB=0.00;SOR=4.804;VQSLOD=8.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:407,30,0 1 35484861 rs11263938 G A 871.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-1.145e+02;SOR=3.690;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:72:900,72,0 1 35486072 rs11476047 TA T 723.73 PASS AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.96;RPA=11,10;RU=A;SB=-2.890e+02;SOR=1.255;STR;VQSLOD=4.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:31:87:761,87,0 1 35562965 rs2971408 G A 2122.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.30;SB=-1.034e+03;SOR=1.402;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2151,157,0 1 35576145 rs2935955 C T 520.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=0.00;SOR=5.421;VQSLOD=8.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:549,42,0 1 35650002 rs3768339 T C 1158.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-4.060e+02;SOR=2.012;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:87:1187,87,0 1 35653783 rs4652873 G C 876.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-1.653e+02;SOR=3.014;VQSLOD=5.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:66:905,66,0 1 35654765 rs2088481 G A 1838.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-8.560e+02;SOR=1.355;VQSLOD=7.16;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,60:60:99:1867,141,0 1 35654777 rs2088482 G A 2001.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=-8.210e+02;SOR=1.467;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2030,153,0 1 35656064 rs11264114 T A 611.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.20;SB=-1.125e+02;SOR=2.948;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:48:640,48,0 1 35656664 rs11264115 G A 2638.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-1.104e+03;SOR=1.497;VQSLOD=8.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2667,196,0 1 35657256 rs12040066 T C 715.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.08;SB=-1.195e+02;SOR=3.160;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:744,54,0 1 35851640 rs16837315 A G 773.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.66;SB=-2.341e+02;SOR=2.387;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:63:802,63,0 1 35852521 rs615315 G T 1151.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.90;SB=-3.090e+02;SOR=2.235;VQSLOD=5.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:87:1180,87,0 1 35900615 rs3814302 A G 5498.77 PASS AC=2;AF=1.00;AN=2;DB;DP=183;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;SB=-3.472e+03;SOR=0.795;VQSLOD=5.03;culprit=DP GT:AD:DP:GQ:PL 1/1:0,183:183:99:5527,412,0 1 35908451 rs2275247 T C 1657.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-3.990e+02;SOR=2.540;VQSLOD=7.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:52:99:1686,123,0 1 35925861 rs2819002 C A 2399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=-1.265e+03;SOR=1.165;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2428,178,0 1 35926150 rs1768560 T C 736.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.47;SB=-2.011e+02;SOR=2.584;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:765,60,0 1 35944886 rs7545232 T C 1100.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6515;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.89;SB=-8.197e+01;SOR=4.615;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:84:1129,84,0 1 36032617 rs2107782 C T 1451.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.26;ReadPosRankSum=-0.116;SB=-3.200e+02;SOR=1.654;VQSLOD=7.97;culprit=FS GT:AD:DP:GQ:PL 1/1:1,44:45:80:1480,80,0 1 36101730 rs523743 T C 347.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.78;SB=0.00;SOR=4.804;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:376,30,0 1 36107250 rs567476 G C 373.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=0.00;SOR=4.977;VQSLOD=8.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:402,33,0 1 36205166 rs577483 A G 264.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.840;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=7.471;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-0.062;SB=-1.850e+02;SOR=0.086;VQSLOD=8.59;culprit=FS GT:AD:DP:GQ:PL 0/1:10,13:23:99:293,0,301 1 36213712 rs516992 G T 1031.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.26;SB=-1.175e+02;SOR=3.767;VQSLOD=4.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:81:1060,81,0 1 36225948 rs7537203 T C 1180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.800;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=4.055;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=0.434;SB=-3.580e+02;SOR=1.133;VQSLOD=7.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,44:104:99:1209,0,1519 1 36282399 rs72065876 CAAAAAAAAAAAAA C 2307.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=1.316;POSITIVE_TRAIN_SITE;QD=19.02;RPA=23,10;RU=A;ReadPosRankSum=0.872;SB=-2.850e+02;SOR=0.663;STR;VQSLOD=3.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,17:28:99:2345,0,1189 1 36282417 rs2791960 A G 182.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.519;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.2425;MLEAC=1;MLEAF=0.500;MQ=59.72;MQ0=0;MQRankSum=-0.322;QD=4.46;ReadPosRankSum=-0.522;SB=-2.203e+01;SOR=0.186;VQSLOD=1.96;culprit=QD GT:AD:DP:GQ:PL 0/1:25,16:41:99:211,0,783 1 36316304 rs4233204 G C 410.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.23;SB=-3.976e+01;SOR=3.611;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:439,33,0 1 36316381 . C CA 153.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.06;MQ0=0;MQRankSum=-1.250;POSITIVE_TRAIN_SITE;QD=5.12;RPA=19,20;RU=A;ReadPosRankSum=-0.437;SB=-1.776e+00;SOR=1.508;STR;VQSLOD=2.81;culprit=QD GT:AD:DP:GQ:PL 0/1:16,14:31:99:191,0,186 1 36316418 . C CA 1218.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.175;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.77;MQ0=0;MQRankSum=-0.115;POSITIVE_TRAIN_SITE;QD=24.37;RPA=10,11;RU=A;ReadPosRankSum=0.130;SB=-2.820e+02;SOR=1.225;STR;VQSLOD=5.54;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,49:57:99:1184,121,0 1 36316571 rs4652895 A C 2524.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.913;DB;DP=231;Dels=0.00;ExcessHet=3.0103;FS=1.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=-1.759;SB=-1.345e+03;SOR=0.768;VQSLOD=5.86;culprit=DP GT:AD:DP:GQ:PL 0/1:128,103:231:99:2553,0,3283 1 36359669 rs2296470 A G 1426.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.345;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=1.284;HaplotypeScore=2.8096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=-1.053;SB=-9.030e+02;SOR=0.565;VQSLOD=7.18;culprit=DP GT:AD:DP:GQ:PL 0/1:95,63:159:99:1455,0,2447 1 36367377 rs2297957 A G 1246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.407;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=1.845;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=0.696;SB=-4.050e+02;SOR=0.977;VQSLOD=7.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,48:91:99:1275,0,1074 1 36367780 rs595961 A G 1054.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.492;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.273;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=-0.686;SB=-5.770e+02;SOR=0.845;VQSLOD=6.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,39:70:99:1083,0,834 1 36385061 rs4142288 G A 775.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.381;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=11.038;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-1.279;SB=-3.710e+02;SOR=0.862;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 0/1:31,32:63:99:804,0,898 1 36439249 rs3736910 C G 214.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.955;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=0.094;SB=-2.503e+01;SOR=0.582;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:243,0,290 1 36553673 rs399393 A G 3600.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=3.997;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.27;ReadPosRankSum=-0.324;SB=-1.932e+03;SOR=0.953;VQSLOD=4.30;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,122:123:99:3629,242,0 1 36554442 rs11263852 G C 425.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.084;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.41;ReadPosRankSum=1.360;SB=0.00;SOR=1.609;VQSLOD=8.53;culprit=FS GT:AD:DP:GQ:PL 0/1:6,13:20:99:454,0,161 1 36557619 rs2236387 G A 875.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.970;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.852;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=-0.878;SB=-4.110e+02;SOR=0.875;VQSLOD=7.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,36:83:99:904,0,1227 1 36563158 rs3738360 C A 451.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.262;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=8.209;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-0.847;SB=-2.530e+02;SOR=0.094;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 0/1:19,19:38:99:480,0,561 1 36563797 rs35495320 C T 53.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.48;ReadPosRankSum=-0.703;SB=-3.100e+01;SOR=0.275;VQSLOD=7.73;culprit=QD GT:AD:DP:GQ:PL 0/1:9,3:12:82:82,0,326 1 36565584 rs274753 C G 638.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;SB=-1.623e+02;SOR=2.419;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:48:667,48,0 1 36565617 rs274754 G A 378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.714;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=8.506;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=1.659;SB=-2.520e+02;SOR=0.105;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 0/1:17,16:33:99:407,0,433 1 36565739 rs57985157 C T 1172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.801;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=0.774;SB=-6.390e+02;SOR=0.617;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:30,45:75:99:1201,0,716 1 36565999 rs4652900 A G 164.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.302;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-1.675;SB=0.00;SOR=0.473;VQSLOD=10.01;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:193,0,265 1 36602943 rs2231318 C T 2285.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-6.550e+02;SOR=2.269;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2314,172,0 1 36603040 . C T 119.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.665;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.55;ReadPosRankSum=0.515;SB=0.00;SOR=0.307;VQSLOD=7.45;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:14:99:148,0,282 1 36603290 rs2231317 C T 150.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.208;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.54;ReadPosRankSum=0.040;SB=-2.501e+01;SOR=1.402;VQSLOD=5.91;culprit=QD GT:AD:DP:GQ:PL 0/1:13,7:20:99:179,0,400 1 36605478 rs2231312 A G 930.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=2.830;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=0.965;SB=-5.520e+02;SOR=0.445;VQSLOD=9.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,38:88:99:959,0,1400 1 36614713 rs10752586 C G 367.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SB=-3.876e+01;SOR=3.442;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:396,30,0 1 36641729 rs2296263 C T 145.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.951;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.11;ReadPosRankSum=0.822;SB=-6.700e+01;SOR=0.693;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:174,0,221 1 36642420 rs475591 T C 1281.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.13;SB=-5.200e+02;SOR=1.828;VQSLOD=5.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1310,99,0 1 36643700 rs141305015 GAGA G 580.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.633;SB=-3.060e+02;SOR=0.693;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:32,12:47:99:618,0,1884 1 36645724 rs57119965 C G 781.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.294;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.05;ReadPosRankSum=-0.533;SB=-4.740e+02;SOR=0.498;VQSLOD=8.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,27:39:99:810,0,356 1 36646102 rs78771983 T C 143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-1.442;SB=0.00;SOR=0.551;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:172,0,178 1 36752152 rs2242428 C T 1999.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.566;DB;DP=176;Dels=0.00;ExcessHet=3.0103;FS=0.585;HaplotypeScore=2.8139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=2.063;SB=-8.790e+02;SOR=0.608;VQSLOD=6.50;culprit=DP GT:AD:DP:GQ:PL 0/1:99,77:176:99:2028,0,2758 1 36752433 rs6425977 C T 4022.77 PASS AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-1.692e+03;SOR=1.503;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,130:130:99:4051,301,0 1 36754467 rs6425978 G C 743.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=0.00;SOR=5.994;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:772,57,0 1 36754522 rs6425979 C A 1388.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.93;SB=-5.740e+02;SOR=1.708;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1417,105,0 1 36762396 rs1566589 C T 1237.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.79;SB=-8.020e+02;SOR=0.739;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:93:1266,93,0 1 36766975 rs10908293 G C 904.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.80;SB=-2.780e+02;SOR=1.697;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:69:933,69,0 1 36767400 rs882799 C T 1744.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8489;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.72;SB=-4.660e+02;SOR=2.345;VQSLOD=3.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1773,132,0 1 36773405 rs35343437 T G 1357.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.870;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=3.187;HaplotypeScore=1.8316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=1.496;SB=-7.900e+02;SOR=0.537;VQSLOD=8.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:70,57:127:99:1386,0,1844 1 36773819 rs11263871 C G 3809.77 PASS AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.01;ExcessHet=3.0103;FS=0.000;HaplotypeScore=55.6614;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=-2.273e+03;SOR=0.709;VQSLOD=5.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,127:127:99:3838,277,0 1 36784499 . AAAT A 428.73 PASS AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;RPA=14,13;RU=AAT;SB=-3.177e+01;SOR=3.611;STR;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:466,36,0 1 36785270 rs2282431 C T 720.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-0.169;SB=-3.100e+02;SOR=0.693;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:38,28:66:99:749,0,1078 1 36787888 rs58971913 G A 235.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.581;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.569;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=0.872;SB=-1.320e+02;SOR=1.247;VQSLOD=6.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,12:25:99:264,0,345 1 36788356 rs7536394 A G 706.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7351;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.45;SB=-4.320e+02;SOR=0.859;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:54:735,54,0 1 36788709 rs144784787 G A 587.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.417;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=0.286;SB=-2.040e+02;SOR=0.682;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:16,23:39:99:616,0,453 1 36814528 rs12564657 T C 934.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.203;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=2.995;HaplotypeScore=3.6144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=0.028;SB=-9.300e+01;SOR=1.280;VQSLOD=7.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,31:73:99:963,0,1197 1 36827125 rs75836932 G T 149.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.403;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.99;ReadPosRankSum=1.594;SB=-9.732e-01;SOR=0.784;VQSLOD=8.42;culprit=QD GT:AD:DP:GQ:PL 0/1:23,7:30:99:178,0,776 1 36921371 rs1538634 G T 1091.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.391;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.17;ReadPosRankSum=-0.759;SB=-4.930e+02;SOR=0.631;VQSLOD=8.88;culprit=FS GT:AD:DP:GQ:PL 0/1:73,46:119:99:1120,0,1946 1 36926423 rs150126875 C G 948.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.099;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=3.974;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=-0.390;SB=-4.560e+02;SOR=1.191;VQSLOD=6.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,40:94:99:977,0,1412 1 36926445 rs3738839 C T 2399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-1.251e+03;SOR=1.264;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2428,178,0 1 36927733 rs7065 G A 1411.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-6.010e+02;SOR=1.559;VQSLOD=7.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1440,105,0 1 36931973 rs150501885 C T 254.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=8.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=1.223;SB=-8.900e+01;SOR=1.670;VQSLOD=5.40;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:283,0,174 1 36933317 rs3917999 C T 175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.294;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.769;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.76;ReadPosRankSum=1.334;SB=-5.100e+01;SOR=1.536;VQSLOD=5.22;culprit=QD GT:AD:DP:GQ:PL 0/1:18,8:26:99:204,0,534 1 36934667 rs2275472 T C 753.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.289;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=0.901;SB=-2.601e+01;SOR=0.653;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:25,24:49:99:782,0,753 1 36937059 rs3917981 A G 1441.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=1.541;SB=-8.750e+02;SOR=0.643;VQSLOD=8.60;culprit=FS GT:AD:DP:GQ:PL 0/1:76,56:132:99:1470,0,2023 1 36937107 . C T 1488.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.898;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.32;ReadPosRankSum=-0.817;SB=-8.190e+02;SOR=0.631;VQSLOD=8.01;culprit=FS GT:AD:DP:GQ:PL 0/1:47,57:104:99:1517,0,1257 1 36938060 rs34363849 A T 126.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=5.859;HaplotypeScore=2.7328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.09;ReadPosRankSum=-0.347;SB=-1.041e+01;SOR=1.268;VQSLOD=4.81;culprit=QD GT:AD:DP:GQ:PL 0/1:32,9:41:99:155,0,861 1 37335458 rs577094 A G 3227.04 PASS AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-1.163e+03;SOR=1.675;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,109:109:99:3255,232,0 1 37335485 rs509284 A G 2858.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5810;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.03;SB=-5.950e+02;SOR=3.003;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2887,211,0 1 37335494 rs577813 G T 2469.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.998;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6492;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.38;ReadPosRankSum=0.749;SB=-3.910e+02;SOR=2.247;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:1,73:74:99:2498,190,0 1 37335551 rs3738085 G A 1090.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=0.00;SOR=6.869;VQSLOD=7.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:90:1119,90,0 1 37346428 rs550250 A G 1255.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.816;HaplotypeScore=1.8934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-1.224;SB=-6.000e+02;SOR=0.547;VQSLOD=9.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,51:93:99:1284,0,1097 1 37346528 rs544774 C T 519.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.620;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.648;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=0.825;SB=-5.600e+01;SOR=1.195;VQSLOD=7.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,19:36:99:548,0,520 1 37356469 rs511852 G A 892.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.190;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=0.279;SB=-1.270e+02;SOR=0.866;VQSLOD=8.82;culprit=FS GT:AD:DP:GQ:PL 0/1:26,30:56:99:921,0,693 1 37626981 rs215756 T C 277.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.561;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=-0.624;SB=-3.876e+01;SOR=0.269;VQSLOD=10.00;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:306,0,268 1 37959450 rs215210 T C 2166.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.40;SB=-9.490e+02;SOR=1.478;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2195,172,0 1 37959470 rs215211 C G 2195.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-8.600e+02;SOR=1.751;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2224,163,0 1 37961613 rs2294873 A G 536.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.744;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.399;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=1.203;SB=-2.440e+02;SOR=0.346;VQSLOD=10.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,18:36:99:565,0,467 1 37967707 rs145062262 ATTGACAGAGAAGATACATG A 2659.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.00;RPA=2,1;RU=TTGACAGAGAAGATACATG;ReadPosRankSum=0.748;SB=0.00;SOR=3.912;STR;VQSLOD=4.25;culprit=FS GT:AD:DP:GQ:PL 0/1:1,13:39:99:2697,0,170 1 37967774 rs215864 C A 489.22 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.814;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.61;ReadPosRankSum=-0.347;SB=0.00;SOR=4.047;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:1,14:15:4:516,4,0 1 37975279 rs215214 C T 1289.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.31;SB=-4.640e+02;SOR=1.828;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1318,99,0 1 37975312 rs2036637 T C 1162.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-3.300e+02;SOR=2.432;VQSLOD=7.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:87:1191,87,0 1 37978999 rs72657778 A C 962.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.862;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=2.412;SB=-6.010e+02;SOR=0.638;VQSLOD=8.45;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:36,37:73:99:991,0,884 1 37980444 rs140274410 G C 259.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.895;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.32;ReadPosRankSum=0.457;SB=-1.766e+00;SOR=2.494;VQSLOD=5.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,9:15:99:288,0,185 1 38006359 rs2174769 A G 937.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-4.540e+02;SOR=1.402;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:69:966,69,0 1 38018150 rs72657793 T C 992.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.682;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=0.116;SB=-4.050e+02;SOR=0.746;VQSLOD=7.97;culprit=FS GT:AD:DP:GQ:PL 0/1:59,41:101:99:1021,0,1569 1 38019747 rs2273013 C T 880.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.960;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=0.633;SB=-4.020e+02;SOR=0.859;VQSLOD=7.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,33:63:99:909,0,787 1 38022452 rs2273014 C A 364.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.012;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=0.340;SB=-5.800e+01;SOR=0.776;VQSLOD=10.42;culprit=FS GT:AD:DP:GQ:PL 0/1:13,14:27:99:393,0,421 1 38023148 rs72657795 T C 308.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.702;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=2.000;SB=-1.905e+01;SOR=0.793;VQSLOD=8.29;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:16,11:27:99:337,0,481 1 38025103 rs41267309 T C 617.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=0.567;SB=-3.760e+02;SOR=0.643;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 0/1:30,25:55:99:646,0,741 1 38030609 rs41267315 C T 671.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.325;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=1.859;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.40;ReadPosRankSum=0.563;SB=-4.290e+02;SOR=0.861;VQSLOD=6.43;culprit=QD GT:AD:DP:GQ:PL 0/1:49,31:80:99:700,0,1181 1 38030696 rs6619 T C 778.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.054;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.873;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=-1.757;SB=-1.900e+02;SOR=1.338;VQSLOD=6.96;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:21,27:48:99:807,0,512 1 38033047 rs2076519 T G 436.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.384;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-0.437;SB=0.00;SOR=0.527;VQSLOD=10.39;culprit=FS GT:AD:DP:GQ:PL 0/1:17,14:31:99:465,0,555 1 38033217 rs41307894 G C 1751.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=2.113;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-1.161;SB=-1.138e+03;SOR=0.741;VQSLOD=7.47;culprit=DP GT:AD:DP:GQ:PL 0/1:71,70:141:99:1780,0,1929 1 38046920 rs2360010 G T 1964.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-6.360e+02;SOR=2.093;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:1993,150,0 1 38047062 rs112076625 C G 1089.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.416;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.767;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=0.712;SB=-6.990e+02;SOR=0.551;VQSLOD=9.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,46:99:99:1118,0,1393 1 38049373 rs3753372 C T 463.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=4.190;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=0.840;SB=-1.730e+02;SOR=1.432;VQSLOD=6.79;culprit=QD GT:AD:DP:GQ:PL 0/1:31,20:51:99:492,0,744 1 38049552 rs6426024 C G 1210.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.16;SB=-4.650e+02;SOR=1.775;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:90:1239,90,0 1 38052799 rs11582642 C T 316.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.082;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=-1.186;SB=0.00;SOR=0.693;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:11,11:22:99:345,0,385 1 38061572 rs6697632 G T 1085.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.69;SB=-1.175e+02;SOR=3.981;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:84:1114,84,0 1 38078300 rs4652964 A G 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.678;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.20;ReadPosRankSum=0.390;SB=-6.300e+01;SOR=0.631;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:19,10:29:99:295,0,512 1 38080065 rs11588571 C A 1084.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.185;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=0.011;SB=-5.370e+02;SOR=0.656;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:51,47:98:99:1113,0,1400 1 38082381 rs45577433 G C 1581.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.792;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=1.508;HaplotypeScore=1.8315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-0.730;SB=-7.280e+02;SOR=0.542;VQSLOD=8.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,59:125:99:1610,0,1808 1 38148765 rs684260 A G 2194.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.28;SB=-1.305e+03;SOR=0.752;VQSLOD=5.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2223,160,0 1 38155841 rs681191 A T 133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-0.786;SB=0.00;SOR=0.446;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:162,0,237 1 38161694 rs615530 A G 756.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.539;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.065;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-2.003;SB=-3.780e+02;SOR=0.523;VQSLOD=9.35;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:26,31:57:99:785,0,758 1 38164724 rs557290 C G 615.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.270;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.142;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=-0.615;SB=-1.920e+02;SOR=0.921;VQSLOD=7.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,23:55:99:644,0,823 1 38164826 rs4653320 G A 103.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.962;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=0.087;SB=-3.401e+01;SOR=0.527;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:132,0,182 1 38166022 rs513826 T C 171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.306;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.092;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.18;ReadPosRankSum=1.595;SB=-6.200e+01;SOR=0.293;VQSLOD=9.31;culprit=QD GT:AD:DP:GQ:PL 0/1:13,8:21:99:200,0,405 1 38166327 rs661460 A T 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.708;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=0.815;SB=-4.400e+01;SOR=1.371;VQSLOD=6.85;culprit=QD GT:AD:DP:GQ:PL 0/1:20,10:30:99:309,0,594 1 38167345 . T TA 122.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=0.878;POSITIVE_TRAIN_SITE;QD=4.38;RPA=16,17;RU=A;ReadPosRankSum=0.330;SB=-3.900e+01;SOR=0.883;STR;VQSLOD=2.85;culprit=QD GT:AD:DP:GQ:PL 0/1:17,11:29:99:160,0,258 1 38173983 rs145033890 TTTC T 1137.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;DB;DP=72;ExcessHet=3.0103;FS=1.132;MLEAC=1;MLEAF=0.500;MQ=60.15;MQ0=0;MQRankSum=1.306;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=1.232;SB=-3.080e+02;SOR=0.426;VQSLOD=0.149;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,27:72:99:1175,0,2269 1 38174185 rs557897 G T 831.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.050;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=5.697;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.76;ReadPosRankSum=0.753;SB=-4.970e+02;SOR=0.304;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 0/1:53,42:95:99:860,0,1599 1 38187888 rs114572315 T C 1574.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.358;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=2.281;HaplotypeScore=9.4618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-0.259;SB=-9.540e+02;SOR=1.023;VQSLOD=7.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,67:127:99:1603,0,1401 1 38196983 . A G 397.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.312;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.73;ReadPosRankSum=0.415;SB=-2.340e+02;SOR=0.538;VQSLOD=8.63;culprit=FS GT:AD:DP:GQ:PL 0/1:12,15:27:99:426,0,360 1 38272660 rs2291297 G A 4368.77 PASS AC=2;AF=1.00;AN=2;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-2.352e+03;SOR=1.085;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,142:142:99:4397,328,0 1 38289383 rs12751325 T C 2739.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.96;SB=-1.668e+03;SOR=0.914;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:2768,208,0 1 38293992 rs9329568 C T 584.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-1.981e+02;SOR=1.981;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:45:613,45,0 1 38301250 rs3912368 A G 1612.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-4.660e+02;SOR=2.437;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1641,120,0 1 38301476 rs3762359 G A 1285.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.7988;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-1.951e+02;SOR=3.716;VQSLOD=7.37;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,42:42:99:1314,102,0 1 38327982 rs3843 G T 1339.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.34;SB=-7.290e+02;SOR=0.909;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1368,102,0 1 38332057 . T TTC 937.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.693;DP=33;ExcessHet=3.0103;FS=2.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.25;RPA=11,12;RU=TC;ReadPosRankSum=-0.376;SB=-1.250e+02;SOR=1.911;STR;VQSLOD=5.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,26:33:99:975,0,113 1 38338795 rs11488569 A G 2503.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.81;SB=-1.064e+03;SOR=1.501;VQSLOD=7.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2532,184,0 1 38341518 rs12752414 G A 512.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=0.00;SOR=5.549;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:541,42,0 1 38345896 rs2306427 A C 960.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.31;SB=-2.471e+02;SOR=2.147;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:989,72,0 1 38352849 rs2279261 G C 466.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=-2.471e+02;SOR=1.112;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:495,36,0 1 38356899 . C CA 265.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;RPA=15,16;RU=A;ReadPosRankSum=0.371;SB=-7.894e+00;SOR=1.609;STR;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:4,15:19:38:240,0,38 1 38397341 rs34655914 G A 1234.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.8395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-4.450e+02;SOR=1.022;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:44:96:1263,96,0 1 38397369 rs35267671 C T 1568.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5810;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-9.400e+02;SOR=0.733;VQSLOD=5.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:50:99:1597,117,0 1 38411350 rs11485595 C T 2161.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.45;SB=-1.050e+03;SOR=1.195;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2190,166,0 1 38411445 rs871524 G A 1126.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=1.182;SB=-6.520e+02;SOR=0.675;VQSLOD=8.72;culprit=FS GT:AD:DP:GQ:PL 0/1:50,45:95:99:1155,0,1207 1 38423853 rs9293 G C 789.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;SB=-8.297e+01;SOR=3.912;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:818,60,0 1 38425629 . CAA C 749.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.83;RPA=21,19;RU=A;ReadPosRankSum=0.579;SB=-1.732e+02;SOR=1.270;STR;VQSLOD=8.00;culprit=FS GT:AD:DP:GQ:PL 0/1:6,30:38:14:735,0,14 1 38425724 rs17531342 T C 2696.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.7525;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-1.085e+03;SOR=1.638;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:84:99:2725,202,0 1 38425895 rs28675056 T C 2105.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.66;SB=-7.350e+02;SOR=2.206;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2134,166,0 1 38442547 rs10890216 G A 1760.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-9.950e+02;SOR=0.877;VQSLOD=7.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1789,135,0 1 38447615 rs7533079 G T 623.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.65;SB=-3.976e+01;SOR=4.407;VQSLOD=8.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:652,51,0 1 38450367 rs6680796 A G 1061.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.34;SB=-4.330e+02;SOR=1.483;VQSLOD=4.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:78:1090,78,0 1 38455389 rs3935867 C T 1745.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-3.820e+02;SOR=2.833;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1774,135,0 1 38455891 rs4360494 G C 408.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;SB=0.00;SOR=5.136;VQSLOD=8.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:437,36,0 1 38462898 rs4274021 T A 1760.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-8.140e+02;SOR=0.762;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1789,141,0 1 38462905 rs12724533 C G 2015.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=-1.128e+03;SOR=0.831;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:2044,150,0 1 38464639 rs4570384 C G 4728.77 PASS AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-1.955e+03;SOR=1.657;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,151:151:99:4757,337,0 1 38554751 rs554916 T C 81.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.29;ReadPosRankSum=-1.206;SB=0.00;SOR=0.223;VQSLOD=9.00;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:99:110,0,324 1 39352116 . C CT 180.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.04;RPA=10,11;RU=T;ReadPosRankSum=0.000;SB=0.00;SOR=0.914;STR;VQSLOD=8.39;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:218,0,145 1 39468805 rs4147754 C A 488.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=0.00;SOR=5.283;VQSLOD=8.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:517,39,0 1 39494666 . C CT 441.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=1.644;QD=12.62;RPA=15,16;RU=T;ReadPosRankSum=0.676;SB=-8.033e+01;SOR=0.573;STR;VQSLOD=2.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,25:56:99:479,0,107 1 39494687 rs3768323 G A 1149.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.0881;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=-1.603e+02;SOR=3.321;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:90:1178,90,0 1 39494760 rs3768322 G A 478.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.20;SB=0.00;SOR=5.421;VQSLOD=8.69;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,14:14:39:507,39,0 1 39550210 rs260972 C T 670.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.15;SB=0.00;SOR=5.892;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:699,54,0 1 39568765 rs2282232 T C 399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.31;SB=-8.097e+01;SOR=2.670;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:428,33,0 1 39696718 rs1932507 C A 504.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.94;ReadPosRankSum=0.332;SB=0.00;SOR=1.931;VQSLOD=8.72;culprit=FS GT:AD:DP:GQ:PL 0/1:6,16:22:99:533,0,167 1 39717566 rs2490948 T C 1027.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.05;SB=-7.180e+02;SOR=0.798;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:78:1056,78,0 1 39719812 rs66880209 G A 489.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.475;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.722;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=0.255;SB=-2.480e+02;SOR=0.357;VQSLOD=9.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,23:47:99:518,0,709 1 39757799 rs16826036 G C 700.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.808;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.700;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=1.088;SB=-2.860e+02;SOR=0.368;VQSLOD=9.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,29:55:99:729,0,718 1 39758634 rs16826038 G A 621.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.195;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=0.377;SB=-2.030e+02;SOR=0.551;VQSLOD=10.08;culprit=FS GT:AD:DP:GQ:PL 0/1:21,22:43:99:650,0,548 1 39766041 rs41270803 A G 593.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.803;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.202;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=-0.018;SB=-1.900e+02;SOR=1.182;VQSLOD=7.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,25:52:99:622,0,788 1 39788761 rs79668525 C G 268.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.125;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.697;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.27;ReadPosRankSum=0.967;SB=-6.100e+01;SOR=1.112;VQSLOD=6.76;culprit=QD GT:AD:DP:GQ:PL 0/1:18,11:29:99:297,0,485 1 39797055 rs16826069 A G 1327.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=4.750;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=0.400;SB=-7.410e+02;SOR=0.851;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 0/1:54,50:104:99:1356,0,1307 1 39799912 rs75770915 C T 1225.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=1.776;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=0.458;SB=-5.920e+02;SOR=0.987;VQSLOD=7.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,44:86:99:1254,0,1148 1 39801815 rs41270807 A C 1081.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.376;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.890;HaplotypeScore=2.5367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=-0.706;SB=-5.230e+02;SOR=0.553;VQSLOD=9.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,36:73:99:1110,0,1009 1 39806610 rs3116396 C T 945.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7742;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-3.020e+02;SOR=2.093;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:72:974,72,0 1 39812518 rs16826087 C T 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.374;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.17;ReadPosRankSum=-0.839;SB=0.00;SOR=0.036;VQSLOD=9.13;culprit=QD GT:AD:DP:GQ:PL 0/1:20,8:28:99:201,0,705 1 39812620 rs2490944 G T 3312.77 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=-1.387e+03;SOR=1.567;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,110:110:99:3341,247,0 1 39812822 rs2761764 C A 4723.77 PASS AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.23;SB=-2.340e+03;SOR=1.022;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,138:138:99:4752,349,0 1 39815143 rs16826093 T A 1465.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.480;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.417;SB=-5.640e+02;SOR=0.721;VQSLOD=8.73;culprit=FS GT:AD:DP:GQ:PL 0/1:61,59:120:99:1494,0,1656 1 39815344 rs41270811 G A 917.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.657;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=8.142;HaplotypeScore=1.6649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=0.151;SB=-4.800e+01;SOR=2.211;VQSLOD=5.56;culprit=FS GT:AD:DP:GQ:PL 0/1:35,32:67:99:946,0,996 1 39816512 rs59084124 A T 2054.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.400;DB;DP=171;Dels=0.00;ExcessHet=3.0103;FS=0.565;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=0.714;SB=-1.297e+03;SOR=0.588;VQSLOD=7.15;culprit=DP GT:AD:DP:GQ:PL 0/1:87,84:171:99:2083,0,2180 1 39823032 . A AT 1717.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.452;DP=159;ExcessHet=3.0103;FS=8.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;RPA=9,10;RU=T;ReadPosRankSum=1.083;SB=-7.820e+02;SOR=0.686;STR;VQSLOD=3.13;culprit=FS GT:AD:DP:GQ:PL 0/1:71,75:159:99:1755,0,1455 1 39824718 rs2256614 C G 466.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=-4.276e+01;SOR=3.767;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:495,36,0 1 39824801 rs201459762 A G 436.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.908;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=5.432;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-0.476;SB=-2.440e+02;SOR=0.160;VQSLOD=8.26;culprit=FS GT:AD:DP:GQ:PL 0/1:18,22:40:99:465,0,516 1 39826391 rs35616541 A ATTAT 1522.73 PASS AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.28;SB=-1.350e+02;SOR=3.912;VQSLOD=5.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:1560,66,0 1 39835817 rs2296172 A G 623.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.314;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.258;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=1.878;SB=-2.990e+02;SOR=1.022;VQSLOD=7.30;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:32,23:55:99:652,0,744 1 39838174 rs80197726 T C 632.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.469;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=2.564;HaplotypeScore=3.3905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.73;ReadPosRankSum=-0.216;SB=-2.340e+02;SOR=0.330;VQSLOD=9.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,25:65:99:661,0,1098 1 39843958 rs663449 G A 691.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-1.125e+02;SOR=3.160;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:720,54,0 1 39844028 rs78976515 C T 423.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.705;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=-2.655;SB=-2.260e+02;SOR=0.518;VQSLOD=8.64;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:23,20:43:99:452,0,629 1 39845296 rs79522721 T G 299.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=4.868;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=-0.592;SB=-1.400e+02;SOR=1.518;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 0/1:5,13:18:93:328,0,93 1 39851009 rs112451431 C T 238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.71;ReadPosRankSum=0.000;SB=0.00;SOR=1.802;VQSLOD=8.97;culprit=FS GT:AD:DP:GQ:PL 0/1:3,8:11:84:267,0,84 1 39878815 rs1746842 A G 2092.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.246;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=1.283;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=0.659;SB=-1.184e+03;SOR=0.892;VQSLOD=7.77;culprit=DP GT:AD:DP:GQ:PL 0/1:73,81:154:99:2121,0,1973 1 39879366 rs604316 T C 1376.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.7125;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=-5.190e+02;SOR=1.414;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1405,111,0 1 39880274 rs783823 A G 540.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.508;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.793;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.200;SB=-2.040e+02;SOR=1.317;VQSLOD=7.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,23:44:99:569,0,546 1 39880319 rs3768302 T G 339.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.941;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=7.346;HaplotypeScore=2.9075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.232;SB=-2.111e+02;SOR=0.066;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 0/1:12,16:28:99:368,0,348 1 39889677 rs663892 G A 1038.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.07;SB=-4.460e+02;SOR=1.609;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:78:1067,78,0 1 39893093 rs625384 C T 1891.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=-6.530e+02;SOR=1.942;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1920,141,0 1 39894811 rs2995513 T C 249.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.81;ReadPosRankSum=-0.243;SB=0.00;SOR=1.445;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:99:278,0,124 1 39894839 rs645061 A G 640.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.60;SB=0.00;SOR=5.892;VQSLOD=7.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:669,51,0 1 39895460 rs683135 G A 1310.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.61;SB=-4.260e+02;SOR=1.923;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1339,102,0 1 39908506 rs587404 G A 1399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.16;SB=-8.950e+02;SOR=0.693;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1428,105,0 1 39913351 rs2296173 A G 1661.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.091;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=4.495;HaplotypeScore=4.4867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=-0.609;SB=-8.880e+02;SOR=0.401;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:61,58:119:99:1690,0,1564 1 39913643 rs783837 C G 1612.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.463;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=2.622;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=1.056;SB=-7.710e+02;SOR=1.018;VQSLOD=7.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,60:105:99:1641,0,1261 1 39914363 rs668556 G C 1723.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.22;SB=-1.061e+03;SOR=0.871;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1752,123,0 1 39917888 . C A 1718.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.744;DP=141;Dels=0.00;ExcessHet=3.0103;FS=1.401;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.19;ReadPosRankSum=0.831;SB=-6.820e+02;SOR=0.876;VQSLOD=6.10;culprit=DP GT:AD:DP:GQ:PL 0/1:79,62:141:99:1747,0,2005 1 39923894 rs145179040 T A 254.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=6.264;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=-0.409;SB=-2.901e+01;SOR=2.833;VQSLOD=5.49;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:90:283,0,90 1 39927507 rs783820 G A 451.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.309;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.3574;MLEAC=1;MLEAF=0.500;MQ=59.30;MQ0=0;MQRankSum=-1.435;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-0.529;SB=-9.500e+01;SOR=0.363;VQSLOD=4.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,17:36:99:480,0,338 1 39957913 rs4660269 A G 1166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=5.121;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=-1.001;SB=-4.940e+02;SOR=1.222;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 0/1:54,47:101:99:1195,0,1298 1 39988967 rs41270827 C A 305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.884;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=-0.608;SB=-4.176e+01;SOR=0.264;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:9,11:20:99:334,0,304 1 39991588 rs3738676 G T 669.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.882;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.636;HaplotypeScore=3.8965;MLEAC=1;MLEAF=0.500;MQ=59.60;MQ0=0;MQRankSum=1.148;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=1.681;SB=-9.800e+01;SOR=1.688;VQSLOD=0.516;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,23:42:99:698,0,499 1 40011582 rs12023084 C T 271.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=5.842;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=-0.211;SB=-1.513e+02;SOR=0.086;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:5,12:17:99:300,0,145 1 40028180 rs4660293 A G 590.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.413;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.255;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-0.009;SB=-1.660e+02;SOR=1.122;VQSLOD=7.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,23:53:99:619,0,763 1 40035686 rs17513135 C T 378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.817;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.366;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=-1.473;SB=-1.620e+02;SOR=0.404;VQSLOD=9.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,17:39:99:407,0,571 1 40036847 rs2293476 G C 363.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.287;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=8.269;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=2.224;SB=-6.829e-02;SOR=3.077;VQSLOD=5.20;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:25,12:37:99:392,0,710 1 40036944 rs61743745 G A 1250.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.083;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=6.925;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.854;SB=-6.920e+02;SOR=0.260;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 0/1:48,48:96:99:1279,0,1292 1 40037354 rs41264487 C G 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.699;SB=-3.501e+01;SOR=0.693;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:207,0,159 1 40041371 . G GA 532.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.65;RPA=2,3;RU=A;ReadPosRankSum=-1.293;SB=-4.076e+01;SOR=0.307;STR;VQSLOD=8.07;culprit=FS GT:AD:DP:GQ:PL 0/1:14,18:32:99:570,0,488 1 40092089 rs2695320 T C 1521.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8097;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.70;SB=-5.860e+02;SOR=1.562;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1550,114,0 1 40096053 rs1148945 T C 606.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.325;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=-0.788;SB=0.00;SOR=1.085;VQSLOD=10.20;culprit=FS GT:AD:DP:GQ:PL 0/1:14,20:35:99:635,0,456 1 40098328 rs784625 T C 5269.77 PASS AC=2;AF=1.00;AN=2;DB;DP=177;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-3.172e+03;SOR=0.704;VQSLOD=5.76;culprit=DP GT:AD:DP:GQ:PL 1/1:0,177:177:99:5298,391,0 1 40098577 rs1148944 T C 213.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=4.393;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.43;ReadPosRankSum=1.795;SB=-1.766e+00;SOR=2.833;VQSLOD=5.35;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:87:242,0,87 1 40125325 rs17264901 G T 271.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-0.312;SB=-4.276e+01;SOR=0.269;VQSLOD=10.09;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:300,0,261 1 40129066 rs4660340 G A 3174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-11.863;DB;DP=247;Dels=0.00;ExcessHet=3.0103;FS=2.867;HaplotypeScore=4.3308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=0.139;SB=-1.816e+03;SOR=0.523;VQSLOD=6.07;culprit=DP GT:AD:DP:GQ:PL 0/1:118,129:247:99:3203,0,3264 1 40131089 rs734497 G T 1273.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.332;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=4.062;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=2.637;SB=-1.380e+02;SOR=0.237;VQSLOD=8.13;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:34,47:81:99:1302,0,1102 1 40131350 rs61781401 T A 1560.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.878;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=1.918;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=-0.760;SB=-3.890e+02;SOR=0.430;VQSLOD=8.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,58:112:99:1589,0,1464 1 40149515 rs784633 A G 476.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.05;SB=-4.076e+01;SOR=3.912;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:505,42,0 1 40149642 rs784634 G T 2049.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.28;SB=-1.086e+03;SOR=1.163;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2078,150,0 1 40149870 rs113763288 C G 748.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.95;SB=0.00;SOR=4.615;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:57:777,57,0 1 40149875 rs113459798 C T 676.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.22;SB=0.00;SOR=5.892;VQSLOD=7.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:705,54,0 1 40150156 rs9662128 G A 1561.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5975;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.93;SB=-7.470e+02;SOR=1.493;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:59:99:1590,114,0 1 40150370 rs2746058 C T 374.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.07;SB=-3.577e+01;SOR=3.442;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:403,30,0 1 40207169 rs497333 T G 821.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.085;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=0.422;SB=-2.980e+02;SOR=0.807;VQSLOD=8.35;culprit=FS GT:AD:DP:GQ:PL 0/1:39,32:71:99:850,0,1090 1 40214525 rs7520588 T A 564.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.382;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=3.172;HaplotypeScore=2.6912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.155;SB=-1.730e+02;SOR=0.290;VQSLOD=9.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,20:46:99:593,0,783 1 40219065 rs1046988 C T 949.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.968;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=0.124;SB=-4.440e+02;SOR=0.622;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:34,38:72:99:978,0,873 1 40226046 rs12094291 G A 382.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.32;ReadPosRankSum=-1.025;SB=-2.120e+02;SOR=0.686;VQSLOD=9.05;culprit=QD GT:AD:DP:GQ:PL 0/1:29,17:46:99:411,0,657 1 40229297 . A AC 657.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.59;MQ0=0;MQRankSum=-3.488;POSITIVE_TRAIN_SITE;QD=10.78;RPA=2,3;RU=C;ReadPosRankSum=-2.339;SB=-2.750e+02;SOR=0.558;STR;VQSLOD=2.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,21:61:99:695,0,1506 1 40313018 rs75996803 C G 485.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.393;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.192;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=0.579;SB=-1.980e+02;SOR=0.973;VQSLOD=7.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,17:44:99:514,0,729 1 40363054 rs3134614 G C 2309.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.00;SB=-7.460e+02;SOR=2.035;VQSLOD=6.59;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,66:66:99:2338,172,0 1 40431727 rs6676052 A G 1738.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.000;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=-1.045;SB=-6.560e+02;SOR=1.029;VQSLOD=7.92;culprit=FS GT:AD:DP:GQ:PL 0/1:41,60:101:99:1767,0,947 1 40433771 rs3103778 A G 710.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.044;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=0.121;SB=-3.990e+02;SOR=0.560;VQSLOD=9.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,28:54:99:739,0,700 1 40526003 rs3122419 T C 803.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.95;SB=-1.205e+02;SOR=3.352;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:832,60,0 1 40533266 rs11207440 T G 842.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.41;SB=-3.130e+02;SOR=1.697;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:63:871,63,0 1 40533287 rs6665926 T G 733.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8364;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.22;SB=-4.530e+02;SOR=0.846;VQSLOD=5.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:27:57:762,57,0 1 40533315 rs6665933 T G 985.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.6017;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-4.400e+02;SOR=0.752;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:34:75:1014,75,0 1 40533320 rs6665936 T G 1081.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.1123;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.24;SB=-5.070e+02;SOR=0.746;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:84:1110,84,0 1 40533326 rs6665937 T G 1160.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-6.030e+02;SOR=0.914;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:87:1189,87,0 1 40533347 rs6665944 T G 1499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8052;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-8.460e+02;SOR=0.823;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1528,111,0 1 40536074 rs145821853 C CT 5779.73 PASS AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.70;SB=-2.699e+03;SOR=0.906;VQSLOD=5.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,122:124:99:5817,367,0 1 40545964 rs3122428 T G 2773.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-1.012e+03;SOR=1.836;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2802,208,0 1 40555274 rs6689837 C G 733.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.57;SB=-2.840e+02;SOR=1.802;VQSLOD=4.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:54:762,54,0 1 40556922 rs3122439 T C 2739.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-1.428e+03;SOR=1.179;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2768,199,0 1 40557656 rs6672053 G A 752.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-7.997e+01;SOR=4.091;VQSLOD=5.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:63:781,63,0 1 40558256 rs4481840 C G 738.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-3.577e+01;SOR=4.615;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:57:767,57,0 1 40562993 rs6600313 T C 567.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.12;SB=0.00;SOR=5.549;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:596,45,0 1 40737516 rs6677717 T G 763.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.21;SB=-7.697e+01;SOR=3.352;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:792,60,0 1 40737589 rs2076697 T C 1625.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-7.510e+02;SOR=1.436;VQSLOD=7.82;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,51:51:99:1654,120,0 1 40768276 rs12038020 C T 483.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.178;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.475;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.209;SB=-1.690e+02;SOR=1.085;VQSLOD=7.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,18:32:99:512,0,342 1 40771973 rs2076696 C G 1109.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.317;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=19.979;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=0.617;SB=-6.040e+02;SOR=0.042;VQSLOD=3.78;culprit=FS GT:AD:DP:GQ:PL 0/1:25,43:68:99:1138,0,773 1 40773149 rs2228564 T C 388.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.293;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.551;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=-0.166;SB=-1.490e+02;SOR=0.204;VQSLOD=10.02;culprit=SOR GT:AD:DP:GQ:PL 0/1:24,16:40:99:417,0,785 1 40776752 rs3737815 C A 79.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.863;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.14;ReadPosRankSum=-0.221;SB=-2.901e+01;SOR=0.446;VQSLOD=8.42;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:99:108,0,327 1 40777800 rs1979785 T G 440.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.464;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-0.457;SB=-3.110e+02;SOR=0.566;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:17,20:37:99:469,0,474 1 40777842 rs209918 A G 457.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-0.050;SB=-2.470e+02;SOR=0.793;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:17,18:35:99:486,0,455 1 40778377 rs1983658 C T 287.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.743;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-1.608;SB=-3.000e+01;SOR=0.693;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:16,10:26:99:316,0,489 1 40781177 rs115504008 A C 200.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.381;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.407;HaplotypeScore=4.5976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.02;ReadPosRankSum=0.012;SB=-1.010e+02;SOR=0.380;VQSLOD=6.71;culprit=QD GT:AD:DP:GQ:PL 0/1:40,10:51:99:229,0,989 1 40830626 rs3013460 A G 391.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.12;SB=-2.570e+02;SOR=0.818;VQSLOD=5.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:30:420,30,0 1 40840353 rs1003710 A G 733.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-2.301e+02;SOR=2.030;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:54:762,54,0 1 40879808 rs209605 G T 1221.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.77;SB=-7.330e+02;SOR=0.990;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:90:1250,90,0 1 40881041 rs209606 C G 3871.77 PASS AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-2.359e+03;SOR=0.824;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,128:128:99:3900,295,0 1 40881247 rs72637911 A G 386.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.69;SB=-2.877e+01;SOR=3.442;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:415,30,0 1 40923019 rs2272994 G A 2318.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-1.387e+03;SOR=0.855;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2347,178,0 1 40980559 rs1134586 G A 1205.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.977;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=4.726;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=-3.816;SB=-7.360e+02;SOR=0.389;VQSLOD=7.57;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:57,50:107:99:1234,0,1548 1 40980731 rs11208299 G T 2934.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.22;SB=-1.642e+03;SOR=0.826;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:2963,223,0 1 40998811 rs6659361 A G 909.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.216;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=13.949;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=-0.493;SB=-2.230e+02;SOR=1.961;VQSLOD=5.52;culprit=FS GT:AD:DP:GQ:PL 0/1:50,33:83:99:938,0,1260 1 40998902 rs1001400 A G 710.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.571;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.21;ReadPosRankSum=-0.240;SB=-2.600e+02;SOR=1.258;VQSLOD=6.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,27:37:99:739,0,243 1 41007124 rs61779162 G A 780.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.696;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=6.565;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.61;ReadPosRankSum=-0.129;SB=-1.850e+02;SOR=0.137;VQSLOD=8.93;culprit=FS GT:AD:DP:GQ:PL 0/1:20,27:47:99:809,0,575 1 41007403 rs41268073 T A 712.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.291;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=0.811;SB=-2.100e+02;SOR=0.765;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:20,25:45:99:741,0,523 1 41013015 rs2297755 C T 1493.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=4.918;HaplotypeScore=2.5540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=-1.078;SB=-6.420e+02;SOR=1.329;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 0/1:53,58:111:99:1522,0,1353 1 41094320 rs2076334 C G 183.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.949;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-0.483;SB=-4.276e+01;SOR=0.223;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:212,0,207 1 41095171 rs2076333 A G 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.543;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=-1.325;SB=-1.460e+02;SOR=0.495;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:11,12:23:99:295,0,265 1 41101572 rs2253835 A G 839.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.59;SB=-2.461e+02;SOR=2.215;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:868,69,0 1 41107360 rs491619 T C 3547.77 PASS AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-1.361e+03;SOR=1.692;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,116:116:99:3576,259,0 1 41107612 rs2076332 C G 222.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.28;ReadPosRankSum=-0.429;SB=0.00;SOR=0.247;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:16,8:24:99:251,0,574 1 41204569 rs1057925 C T 560.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.590;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=4.662;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-1.628;SB=-3.750e+02;SOR=0.257;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:16,23:39:99:589,0,482 1 41237278 rs143794938 T G 1249.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.676;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=3.954;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=-0.399;SB=-6.800e+02;SOR=1.084;VQSLOD=7.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,49:92:99:1278,0,1115 1 41237388 rs753753 A G 477.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.404;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-1.963;SB=-6.800e+01;SOR=0.446;VQSLOD=9.65;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:21,16:37:99:506,0,667 1 41284366 rs2361660 G C 283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.530;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.67;ReadPosRankSum=-0.050;SB=-1.510e+02;SOR=0.569;VQSLOD=9.21;culprit=QD GT:AD:DP:GQ:PL 0/1:26,11:37:99:312,0,722 1 41284406 rs2361659 A G 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.849;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.29;ReadPosRankSum=-1.387;SB=-9.000e+01;SOR=0.446;VQSLOD=9.20;culprit=QD GT:AD:DP:GQ:PL 0/1:20,10:30:99:247,0,589 1 41285087 rs4660468 T C 986.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.178;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=1.838;HaplotypeScore=1.9990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-0.756;SB=-5.470e+02;SOR=0.829;VQSLOD=7.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,40:80:99:1015,0,1041 1 41298510 rs874847 G A 165.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=0.386;SB=0.00;SOR=0.693;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:194,0,158 1 41298546 . G GC 1138.73 PASS AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.13;RPA=4,5;RU=C;SB=0.00;SOR=6.932;STR;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:93:1176,93,0 1 41298652 rs913378 T C 4061.77 PASS AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-1.519e+03;SOR=1.609;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,130:130:99:4090,295,0 1 41327407 rs116373577 G A 300.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.06;SB=-7.697e+01;SOR=1.981;VQSLOD=4.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:329,27,0 1 41452880 rs12044786 G A 180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=1.693;SB=0.00;SOR=1.085;VQSLOD=9.88;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:209,0,130 1 41453286 rs5773721 GT G 1235.73 PASS AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.65;RPA=2,1;RU=T;SB=-2.221e+02;SOR=2.985;STR;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:90:1273,90,0 1 41466550 rs12735455 T A 254.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=7.570;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=-1.804;SB=-9.732e-01;SOR=3.258;VQSLOD=4.91;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:283,0,160 1 41466681 rs140062309 CCT C 2113.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.708;DB;DP=76;ExcessHet=3.0103;FS=9.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=-0.246;SB=-1.066e+03;SOR=0.190;VQSLOD=4.72;culprit=FS GT:AD:DP:GQ:PL 0/1:33,43:76:99:2151,0,1563 1 41466803 rs12718433 G A 839.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.671;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=-0.276;SB=-4.310e+02;SOR=0.636;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 0/1:38,34:72:99:868,0,1034 1 41473283 rs41308258 A G 693.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.924;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-1.233;SB=-2.860e+02;SOR=0.612;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:29,25:54:99:722,0,848 1 41473342 . C T 527.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.419;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.08;ReadPosRankSum=-1.934;SB=-3.020e+02;SOR=0.534;VQSLOD=8.20;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:15,20:36:99:556,0,306 1 41475085 rs12144160 A G 629.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.118;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=1.846;SB=-3.120e+02;SOR=0.693;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:24,24:49:99:658,0,574 1 41482976 rs79974017 A G 323.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.388;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.740;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=-1.128;SB=-1.140e+02;SOR=1.270;VQSLOD=6.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,11:21:99:352,0,208 1 41485902 rs3738368 C G 464.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.666;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=0.145;SB=-2.360e+02;SOR=0.693;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:23,18:41:99:493,0,658 1 41494222 rs11578697 G T 1615.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.049;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.641;HaplotypeScore=6.2732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-0.089;SB=-7.760e+02;SOR=0.787;VQSLOD=8.49;culprit=DP GT:AD:DP:GQ:PL 0/1:75,64:139:99:1644,0,1981 1 41499540 rs74545213 T C 333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.317;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=9.040;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-0.212;SB=-1.352e-01;SOR=3.456;VQSLOD=5.06;culprit=FS GT:AD:DP:GQ:PL 0/1:17,11:28:99:362,0,430 1 41540853 rs2011981 A T 2390.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-7.280e+02;SOR=1.966;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:79:99:2419,181,0 1 41540861 rs2011982 T C 2764.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-1.170e+03;SOR=1.584;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2793,202,0 1 41541166 rs41269465 C T 553.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.038;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.101;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=-1.414;SB=-2.670e+02;SOR=0.905;VQSLOD=7.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,21:48:99:582,0,753 1 41582373 rs11209562 A G 362.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.096;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=0.657;SB=0.00;SOR=0.693;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:11,11:23:99:391,0,346 1 41582470 rs11209563 T C 1297.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.884;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=3.551;HaplotypeScore=3.5557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-1.189;SB=-1.870e+02;SOR=1.179;VQSLOD=7.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,45:95:99:1326,0,1438 1 41582760 rs11209565 G A 347.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.399;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=-0.226;SB=-3.300e+01;SOR=1.244;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:376,0,226 1 41618442 rs213768 A T 1553.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=-5.820e+02;SOR=1.802;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1582,117,0 1 41627206 rs11209604 C T 426.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.478;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=5.620;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-0.753;SB=-1.910e+02;SOR=1.253;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 0/1:12,17:29:99:455,0,307 1 41828124 . A AC 239.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=0.464;POSITIVE_TRAIN_SITE;QD=17.12;RPA=6,7;RU=C;ReadPosRankSum=-0.321;SB=0.00;SOR=1.329;STR;VQSLOD=3.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,9:17:99:277,0,132 1 41848060 rs12092825 C T 397.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.643;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.86;ReadPosRankSum=1.220;SB=0.00;SOR=2.584;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 0/1:3,13:16:74:426,0,74 1 41848296 rs4359027 G A 1897.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.896;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=1.258;HaplotypeScore=2.7880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.382;SB=-1.309e+03;SOR=0.570;VQSLOD=7.40;culprit=DP GT:AD:DP:GQ:PL 0/1:74,84:158:99:1926,0,1812 1 41949595 rs2759256 G A 2115.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-7.620e+02;SOR=1.644;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2144,160,0 1 41949628 rs2759257 A C 2872.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-1.272e+03;SOR=1.559;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,92:92:99:2901,211,0 1 41949972 rs11210278 C T 777.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.82;SB=-3.930e+02;SOR=0.963;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:806,60,0 1 41950312 rs2984691 T C 874.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.16;SB=-3.240e+02;SOR=1.942;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:69:903,69,0 1 41976017 rs678110 C T 904.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.069;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=4.404;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=1.169;SB=-1.560e+02;SOR=1.467;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 0/1:30,32:62:99:933,0,797 1 41976328 rs9439043 T C 891.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-2.880e+02;SOR=1.802;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:69:920,69,0 1 41978566 rs2991344 T G 829.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-5.170e+02;SOR=0.836;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:63:858,63,0 1 41978825 rs2483689 C G 2596.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.19;SB=-1.602e+03;SOR=0.788;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2625,193,0 1 41979156 rs615177 A G 511.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.157;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-0.130;SB=-2.580e+02;SOR=0.929;VQSLOD=7.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,19:44:99:540,0,711 1 41983912 rs2810547 C A 1654.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.092;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.9287;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.13;ReadPosRankSum=1.884;SB=-5.810e+02;SOR=1.123;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 1/1:2,59:65:99:1683,126,0 1 42041479 rs1815257 A C 818.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.610;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=1.961;HaplotypeScore=3.5581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=1.524;SB=-4.080e+02;SOR=1.044;VQSLOD=7.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,31:73:99:847,0,1026 1 42041484 rs80191481 C A 776.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.437;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=1.292;SB=-4.400e+02;SOR=0.773;VQSLOD=8.42;culprit=FS GT:AD:DP:GQ:PL 0/1:40,33:73:99:805,0,980 1 42045302 rs2810564 G A 774.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-1.453e+02;SOR=2.584;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:803,60,0 1 42046812 rs2810565 C T 1063.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.24;SB=-5.750e+02;SOR=0.818;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:84:1092,84,0 1 42047300 rs41269473 A T 821.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.723;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=-0.045;SB=-3.410e+02;SOR=0.725;VQSLOD=8.47;culprit=FS GT:AD:DP:GQ:PL 0/1:45,34:79:99:850,0,1239 1 42048745 rs2810566 T C 3086.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.7548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-1.538e+03;SOR=0.736;VQSLOD=5.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:96:99:3115,238,0 1 42049032 rs2984694 G A 2057.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=-1.115e+03;SOR=1.098;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2086,157,0 1 42049140 rs2475842 C G 3056.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.20;SB=-8.190e+02;SOR=2.359;VQSLOD=5.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:3085,223,0 1 42050366 rs2146315 C T 1035.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.797;HaplotypeScore=1.6649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-0.458;SB=-6.650e+02;SOR=0.554;VQSLOD=9.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,41:90:99:1064,0,1273 1 42629040 rs2232224 A G 3293.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.61;SB=-1.386e+03;SOR=1.493;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:3322,238,0 1 42630364 rs2071499 G A 1678.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-6.350e+02;SOR=1.877;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1707,126,0 1 42656819 rs16829212 T A 536.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.20;SB=0.00;SOR=5.549;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:565,45,0 1 42693597 rs343376 A G 4114.77 PASS AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-2.263e+03;SOR=0.836;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,133:134:99:4143,307,0 1 42730525 rs617824 T C 427.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=0.00;SOR=5.136;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:456,36,0 1 42880516 rs1055055 T C 1971.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=3.962;HaplotypeScore=3.8529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=1.037;SB=-1.067e+03;SOR=0.499;VQSLOD=8.92;culprit=DP GT:AD:DP:GQ:PL 0/1:67,73:140:99:2000,0,1835 1 42880841 rs35585609 T TCA 439.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.87;RPA=1,2;RU=CA;ReadPosRankSum=1.958;SB=0.00;SOR=1.061;STR;VQSLOD=8.75;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,10:17:99:477,0,314 1 42880866 rs2484436 G A 356.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=0.00;SOR=4.804;VQSLOD=8.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:385,30,0 1 42898843 rs1034268 A G 3087.77 PASS AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-1.399e+03;SOR=1.449;VQSLOD=5.87;culprit=DP GT:AD:DP:GQ:PL 1/1:0,99:99:99:3116,223,0 1 42915527 rs12142723 C A 663.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.260;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=1.814;SB=-6.001e+01;SOR=0.276;VQSLOD=9.16;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:26,23:49:99:692,0,892 1 42966037 rs2992346 T C 1276.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.54;SB=-7.360e+02;SOR=1.270;VQSLOD=4.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:96:1305,96,0 1 43110276 rs7523056 G A 239.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.101;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.611;SB=0.00;SOR=0.593;VQSLOD=10.31;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:268,0,252 1 43124701 rs6600419 A G 1169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.866;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=6.213;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-0.593;SB=-1.090e+02;SOR=1.609;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 0/1:44,39:83:99:1198,0,1215 1 43124859 rs3738494 C T 925.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.773;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-1.056;SB=-4.330e+02;SOR=0.629;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:36,40:76:99:954,0,990 1 43126733 rs3768025 G A 1447.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.912;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=4.221;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=-0.135;SB=-7.440e+02;SOR=0.371;VQSLOD=9.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,60:95:99:1476,0,933 1 43126766 rs3768026 C A 1062.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.414;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=6.055;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=1.997;SB=-4.570e+02;SOR=0.213;VQSLOD=8.52;culprit=FS GT:AD:DP:GQ:PL 0/1:25,42:67:99:1091,0,642 1 43132393 . G GA 435.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;DP=51;ExcessHet=3.0103;FS=1.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.68;RPA=2,3;RU=A;ReadPosRankSum=0.190;SB=-1.230e+02;SOR=0.454;STR;VQSLOD=9.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,16:51:99:473,0,1059 1 43149028 rs182184544 G T 725.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.269;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.958;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=-1.375;SB=-4.330e+02;SOR=0.520;VQSLOD=9.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,31:66:99:754,0,1023 1 43158943 rs144349068 CT C 97.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;DB;DP=18;ExcessHet=3.0103;FS=7.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.43;RPA=14,13;RU=T;ReadPosRankSum=-0.534;SB=-5.397e+01;SOR=0.044;STR;VQSLOD=6.11;culprit=QD GT:AD:DP:GQ:PL 0/1:10,8:18:99:135,0,224 1 43212431 rs4660662 A G 2836.77 PASS AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.50;SB=-1.666e+03;SOR=0.953;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:93:99:2865,208,0 1 43213103 rs3738498 A C 1089.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.1486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.39;ReadPosRankSum=-0.008;SB=-6.550e+02;SOR=0.751;VQSLOD=8.01;culprit=FS GT:AD:DP:GQ:PL 0/1:70,46:116:99:1118,0,1863 1 43213499 rs3738499 C T 1127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.150;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=-0.422;SB=-4.560e+02;SOR=0.576;VQSLOD=9.11;culprit=FS GT:AD:DP:GQ:PL 0/1:62,48:110:99:1156,0,1580 1 43213610 rs7552138 T C 628.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-4.276e+01;SOR=4.174;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:657,48,0 1 43215930 rs11581921 C T 2529.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.194;DB;DP=189;Dels=0.00;ExcessHet=3.0103;FS=2.507;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-0.110;SB=-1.560e+03;SOR=0.683;VQSLOD=7.85;culprit=DP GT:AD:DP:GQ:PL 0/1:91,98:189:99:2558,0,2421 1 43221187 rs3738502 C T 608.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.487;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.316;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=1.451;SB=-3.590e+02;SOR=0.818;VQSLOD=6.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,27:53:99:637,0,760 1 43222439 rs11585208 C T 104.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=-0.601;SB=-3.100e+01;SOR=0.693;VQSLOD=10.24;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:133,0,143 1 43227867 rs2760070 G A 744.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.69;SB=0.00;SOR=6.091;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:773,60,0 1 43228189 rs2816593 T A 2370.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.87;SB=-2.401e+02;SOR=4.174;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2399,193,0 1 43232798 rs11210712 G T 139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.432;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.32;ReadPosRankSum=1.644;SB=-2.501e+01;SOR=1.981;VQSLOD=5.70;culprit=QD GT:AD:DP:GQ:PL 0/1:9,6:15:99:168,0,252 1 43232807 rs3738504 C G 427.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-1.633e+02;SOR=1.765;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:456,36,0 1 43239395 rs2760075 G A 1231.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-1.603e+02;SOR=3.967;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1260,99,0 1 43279094 rs323714 T C 894.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.11;SB=-5.300e+02;SOR=0.880;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:66:923,66,0 1 43279132 rs323713 C T 472.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.647;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.30;ReadPosRankSum=-0.046;SB=-2.090e+02;SOR=0.693;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 0/1:10,19:29:99:501,0,301 1 43279148 rs3738512 G C 245.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.114;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.603;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=-0.805;SB=-9.700e+01;SOR=1.085;VQSLOD=6.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,10:25:99:274,0,373 1 43296173 rs33950227 C T 799.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.849;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=0.438;SB=-4.350e+02;SOR=0.869;VQSLOD=7.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,32:84:99:828,0,1094 1 43296195 rs33953680 C T 829.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.906;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=-1.064;SB=-5.050e+02;SOR=0.693;VQSLOD=8.31;culprit=FS GT:AD:DP:GQ:PL 0/1:50,36:86:99:858,0,1269 1 43300663 rs4660672 T C 765.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-7.997e+01;SOR=4.091;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:794,60,0 1 43300921 rs4660673 C G 1352.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.82;SB=-2.471e+02;SOR=3.258;VQSLOD=7.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1381,102,0 1 43302971 rs1466548 C G 307.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-7.797e+01;SOR=2.303;VQSLOD=6.91;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,10:10:24:336,24,0 1 43356765 rs10789430 T C 526.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.08;SB=-2.850e+02;SOR=1.230;VQSLOD=4.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:39:555,39,0 1 43393245 rs35565219 G GGGTGAGAAAT 1901.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;DB;DP=41;ExcessHet=3.0103;FS=6.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-0.476;SB=-4.900e+02;SOR=0.125;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:24,17:41:99:1939,0,2775 1 43408570 rs16830101 C G 289.78 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.34;ReadPosRankSum=-0.230;SB=0.00;SOR=2.494;VQSLOD=7.61;culprit=FS GT:AD:DP:GQ:PL 1/1:2,9:11:24:318,24,0 1 43417781 rs12407920 C T 781.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.141;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=1.073;SB=-1.650e+02;SOR=0.968;VQSLOD=10.04;culprit=FS GT:AD:DP:GQ:PL 0/1:14,27:41:99:810,0,374 1 43418026 rs2297972 C T 4165.77 PASS AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.76;SB=-2.406e+03;SOR=1.016;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,140:140:99:4194,310,0 1 43418130 rs369684030 T C 763.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.811;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=10.063;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.93;ReadPosRankSum=0.479;SB=-1.490e+02;SOR=2.006;VQSLOD=4.35;culprit=FS GT:AD:DP:GQ:PL 0/1:35,29:64:99:792,0,991 1 43652369 rs6413971 T C 2028.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.7949;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=-6.940e+02;SOR=1.863;VQSLOD=5.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:62:99:2057,150,0 1 43663376 rs513009 A G 2092.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=-6.980e+02;SOR=2.093;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2121,157,0 1 43672636 rs11210812 T G 1194.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.19;SB=-2.750e+02;SOR=2.712;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:90:1223,90,0 1 43675467 rs2453412 G A 7867.77 PASS AC=2;AF=1.00;AN=2;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.7668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-4.276e+03;SOR=0.894;VQSLOD=3.97;culprit=DP GT:AD:DP:GQ:PL 1/1:0,249:250:99:7896,599,0 1 43680855 rs4233492 G A 1347.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;SB=-3.280e+02;SOR=2.531;VQSLOD=7.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1376,102,0 1 43681184 rs612626 C T 1499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.33;SB=-1.961e+02;SOR=3.516;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1528,117,0 1 43697968 rs3120045 G A 387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=9.412;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=0.346;SB=-2.520e+02;SOR=0.076;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 0/1:13,15:28:99:416,0,396 1 43698054 rs12075055 A C 284.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.90;ReadPosRankSum=-0.556;SB=-8.600e+01;SOR=0.489;VQSLOD=9.54;culprit=QD GT:AD:DP:GQ:PL 0/1:21,11:32:99:313,0,596 1 43699791 rs7531285 C T 201.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=0.064;SB=0.00;SOR=0.693;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:230,0,229 1 43699813 rs3820588 A G 705.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=0.00;SOR=5.892;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:734,54,0 1 43699935 rs2477561 C T 3874.77 PASS AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-1.177e+03;SOR=2.207;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,121:121:99:3903,295,0 1 43700140 rs2483688 A G 5471.77 PASS AC=2;AF=1.00;AN=2;DB;DP=183;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=-2.799e+03;SOR=1.030;VQSLOD=5.70;culprit=DP GT:AD:DP:GQ:PL 1/1:0,183:183:99:5500,403,0 1 43738340 rs10890247 A C 467.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.181;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.32;ReadPosRankSum=0.744;SB=-3.260e+02;SOR=0.793;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:8,19:27:99:496,0,216 1 43770518 rs12022684 C G 421.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.992;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=1.028;SB=-2.610e+02;SOR=0.160;VQSLOD=9.58;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,16:26:99:450,0,260 1 43771016 rs3831248 TA T 7003.73 PASS AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;RPA=3,2;RU=A;SB=-3.080e+03;SOR=1.026;STR;VQSLOD=5.47;culprit=DP GT:AD:DP:GQ:PL 1/1:0,171:174:99:7041,515,0 1 43771090 rs3120044 G A 3159.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-7.570e+02;SOR=2.694;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:3188,235,0 1 43773033 rs2275180 A G 2092.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.88;SB=-7.640e+02;SOR=1.688;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:2121,156,0 1 43774437 rs1467809 G A 481.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.11;SB=-1.881e+02;SOR=1.244;VQSLOD=6.49;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,16:16:39:510,39,0 1 43774495 rs2282225 G C 316.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.622;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-0.418;SB=-7.500e+01;SOR=1.609;VQSLOD=6.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,12:28:99:345,0,438 1 43777852 rs1999595 C T 1175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.071;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.968;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=0.570;SB=-3.420e+02;SOR=0.900;VQSLOD=7.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,40:78:99:1204,0,1149 1 43779564 rs3120276 T C 1991.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SB=-9.510e+02;SOR=1.296;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2020,147,0 1 43779869 rs2991990 T G 2180.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;SB=-1.174e+03;SOR=1.085;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2209,160,0 1 43782846 rs1198982 G A 962.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.06;SB=-2.131e+02;SOR=2.694;VQSLOD=7.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:78:991,78,0 1 43892336 rs182782910 G A 305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.316;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=0.173;SB=-6.400e+01;SOR=0.693;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:12,12:24:99:334,0,338 1 43908274 rs2275098 C T 863.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.509;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.912;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-0.521;SB=-4.090e+02;SOR=0.578;VQSLOD=9.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,34:74:99:892,0,1123 1 43998397 rs11350891 GT G 1563.73 PASS AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.43;RPA=7,6;RU=T;SB=-3.930e+02;SOR=2.345;STR;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:61:99:1601,165,0 1 44019731 rs2842185 C T 1397.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=34.94;SB=0.00;SOR=7.428;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1426,111,0 1 44057950 rs573350 T C 211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.555;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.782;SB=0.00;SOR=0.425;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:240,0,271 1 44058265 rs3828151 C A 749.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.884;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=2.034;SB=-2.660e+02;SOR=0.610;VQSLOD=9.12;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:37,28:66:99:778,0,1000 1 44064319 rs17849103 A G 888.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.927;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.608;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=-0.082;SB=-2.370e+02;SOR=1.321;VQSLOD=7.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,34:60:99:917,0,728 1 44067859 rs12023161 A G 1938.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.139;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.1863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=1.702;SB=-9.890e+02;SOR=0.630;VQSLOD=8.44;culprit=FS GT:AD:DP:GQ:PL 0/1:61,78:139:99:1967,0,1494 1 44071221 rs631248 G A 1554.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.570;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=2.277;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=-0.336;SB=-6.820e+02;SOR=0.941;VQSLOD=7.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:68,62:130:99:1583,0,1649 1 44071853 rs512579 T C 198.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.897;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=1.660;SB=0.00;SOR=0.425;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:227,0,353 1 44072420 rs539096 A G 676.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.679;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.022;HaplotypeScore=2.4923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=0.480;SB=-3.340e+02;SOR=0.916;VQSLOD=6.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,24:49:99:705,0,638 1 44075227 rs517622 T C 1581.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.28;SB=-2.001e+02;SOR=4.047;VQSLOD=4.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1610,129,0 1 44083110 rs571862 C T 1200.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.310;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=4.215;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.06;ReadPosRankSum=-0.207;SB=-3.090e+02;SOR=1.445;VQSLOD=5.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,40:63:99:1229,0,525 1 44083507 rs641365 T C 1546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=4.192;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-0.061;SB=-8.550e+02;SOR=1.061;VQSLOD=7.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:67,63:130:99:1575,0,1647 1 44083519 rs641351 G A 1438.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.560;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=2.333;HaplotypeScore=3.6926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=0.491;SB=-7.080e+02;SOR=0.967;VQSLOD=7.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:67,57:124:99:1467,0,1688 1 44084620 rs16831024 G T 1039.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.778;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=5.063;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=0.976;SB=-6.000e+02;SOR=0.764;VQSLOD=4.93;culprit=FS GT:AD:DP:GQ:PL 0/1:58,43:101:99:1068,0,1793 1 44084739 rs1143701 C T 1259.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=2.159;HaplotypeScore=1.8401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.81;ReadPosRankSum=1.496;SB=-8.160e+02;SOR=0.728;VQSLOD=6.76;culprit=QD GT:AD:DP:GQ:PL 0/1:88,55:143:99:1288,0,2245 1 44086080 rs568639 T C 1630.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.034;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.702;HaplotypeScore=1.8640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-1.280;SB=-7.680e+02;SOR=0.805;VQSLOD=7.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:57,64:121:99:1659,0,1554 1 44087496 rs673485 C T 1071.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.853;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=3.286;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=0.676;SB=-4.770e+02;SOR=0.347;VQSLOD=10.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,42:84:99:1100,0,1172 1 44125962 rs3215843 CA C 652.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;DB;DP=58;ExcessHet=3.0103;FS=4.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;RPA=5,4;RU=A;ReadPosRankSum=-0.304;SB=-2.280e+02;SOR=0.218;STR;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:31,27:58:99:690,0,857 1 44132744 rs78418435 C T 1048.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.648;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=1.576;HaplotypeScore=5.6193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.80;ReadPosRankSum=1.400;SB=-6.340e+02;SOR=0.937;VQSLOD=6.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,46:107:99:1077,0,1527 1 44137257 rs586339 C A 1285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.098;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=1.646;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-0.656;SB=-6.980e+02;SOR=0.476;VQSLOD=9.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,46:99:99:1314,0,1544 1 44280381 rs37468 A T 698.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.442;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.193;HaplotypeScore=1.6634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=-0.232;SB=-2.280e+02;SOR=0.497;VQSLOD=9.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,28:58:99:727,0,804 1 44323736 rs2906465 T C 633.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-2.122;SB=-3.080e+02;SOR=0.675;VQSLOD=9.02;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:22,27:49:99:662,0,527 1 44344796 rs2527777 T C 604.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.445;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=1.513;SB=-3.500e+02;SOR=0.874;VQSLOD=8.36;culprit=FS GT:AD:DP:GQ:PL 0/1:20,22:42:99:633,0,623 1 44363710 rs61770289 T C 275.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.513;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.917;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=0.028;SB=-9.732e-01;SOR=1.880;VQSLOD=5.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,10:25:99:304,0,437 1 44365457 rs783304 A G 865.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.913;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.931;HaplotypeScore=2.5584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=-0.652;SB=-2.150e+02;SOR=0.273;VQSLOD=10.08;culprit=SOR GT:AD:DP:GQ:PL 0/1:32,32:64:99:894,0,980 1 44365529 rs783303 G A 305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.270;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.132;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-0.342;SB=-9.732e-01;SOR=2.147;VQSLOD=5.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,10:23:99:334,0,419 1 44386305 rs3120802 C T 291.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.084;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.45;ReadPosRankSum=0.000;SB=-9.800e+01;SOR=1.179;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:5,10:15:99:320,0,159 1 44386615 rs3120803 A G 858.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.697;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.5883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=-0.424;SB=-3.920e+02;SOR=0.712;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:27,30:62:99:887,0,651 1 44401384 rs2242637 A G 941.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.430;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=4.633;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=1.119;SB=-3.220e+02;SOR=1.292;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 0/1:40,36:77:99:970,0,1042 1 44426948 rs2906596 G A 598.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.914;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.283;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=0.806;SB=-1.970e+02;SOR=1.150;VQSLOD=7.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,21:42:99:627,0,522 1 44432732 rs147777752 C T 516.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.377;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=0.000;SB=-3.370e+02;SOR=0.425;VQSLOD=9.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,21:34:99:545,0,291 1 44442930 rs2428954 A G 1777.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.053;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=6.626;HaplotypeScore=2.7569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-0.425;SB=-7.930e+02;SOR=1.257;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 0/1:67,66:133:99:1806,0,1701 1 44443459 rs2428953 G A 300.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.226;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.049;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=-0.066;SB=-9.700e+01;SOR=0.199;VQSLOD=9.58;culprit=SOR GT:AD:DP:GQ:PL 0/1:17,12:29:99:329,0,445 1 44450737 rs2231283 C G 1218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.412;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=5.673;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-0.051;SB=-6.500e+02;SOR=0.284;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 0/1:48,48:96:99:1247,0,1390 1 44455871 rs2231284 T C 741.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.070;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.576;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=-0.972;SB=-8.100e+01;SOR=1.179;VQSLOD=7.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,26:49:99:770,0,682 1 44457739 . T TC 775.73 PASS AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.22;RPA=1,2;RU=C;SB=-8.897e+01;SOR=3.500;STR;VQSLOD=4.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:19:54:813,54,0 1 44466606 rs2248632 G A 707.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.004;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.875;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.85;ReadPosRankSum=-0.162;SB=-4.660e+02;SOR=0.481;VQSLOD=9.51;culprit=QD GT:AD:DP:GQ:PL 0/1:48,32:80:99:736,0,1421 1 44468235 rs2248829 G A 896.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.715;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-0.637;SB=-4.670e+02;SOR=0.593;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:28,35:64:99:925,0,743 1 44475586 rs1766967 G A 617.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.528;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=-0.528;SB=-1.350e+02;SOR=0.671;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:31,25:56:99:646,0,933 1 44569098 rs10890291 C A 113.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.75;ReadPosRankSum=0.693;SB=-9.700e+01;SOR=0.495;VQSLOD=9.50;culprit=QD GT:AD:DP:GQ:PL 0/1:7,6:13:99:142,0,180 1 44569131 rs11210964 C G 113.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.75;ReadPosRankSum=0.138;SB=-8.300e+01;SOR=0.495;VQSLOD=9.57;culprit=QD GT:AD:DP:GQ:PL 0/1:7,6:13:99:142,0,150 1 44569217 . C A 57.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.25;ReadPosRankSum=0.980;SB=-1.905e+01;SOR=0.889;VQSLOD=3.12;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:86:86,0,289 1 44569415 . G GC 249.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;DP=20;ExcessHet=3.0103;FS=2.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.87;RPA=2,3;RU=C;ReadPosRankSum=0.934;SB=-1.380e+02;SOR=0.223;STR;VQSLOD=8.29;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,8:20:99:287,0,382 1 44595113 rs2429051 G C 2423.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.502;DB;DP=162;Dels=0.00;ExcessHet=3.0103;FS=1.985;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=2.616;SB=-1.376e+03;SOR=0.518;VQSLOD=6.17;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:74,88:162:99:2452,0,2034 1 44595410 rs2485652 A G 1921.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.475;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.658;HaplotypeScore=5.4462;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=1.094;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=1.539;SB=-1.180e+03;SOR=0.509;VQSLOD=0.394;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,71:133:99:1950,0,1547 1 44595426 rs2429050 G A 1821.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.101;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.673;HaplotypeScore=2.5655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=0.368;SB=-1.030e+03;SOR=0.501;VQSLOD=7.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,73:129:99:1850,0,1447 1 44596379 . CCAA C 2627.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;DP=117;ExcessHet=3.0103;FS=7.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.33;RPA=4,3;RU=CAA;ReadPosRankSum=0.483;SB=-7.830e+02;SOR=1.399;STR;VQSLOD=3.46;culprit=FS GT:AD:DP:GQ:PL 0/1:55,53:117:99:2665,0,2828 1 44679556 rs803369 A G 852.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.299;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.8492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=-0.838;SB=-4.350e+02;SOR=0.588;VQSLOD=10.02;culprit=FS GT:AD:DP:GQ:PL 0/1:32,30:62:99:881,0,762 1 44681113 rs1291169 T C 181.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.557;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-0.112;SB=0.00;SOR=0.582;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:210,0,267 1 44684995 rs2799480 T C 1501.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.040;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=1.959;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=1.340;SB=-4.610e+02;SOR=1.015;VQSLOD=7.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,52:91:99:1530,0,998 1 44778967 rs375264402 C T 587.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.565;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=4.313;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.33;ReadPosRankSum=0.227;SB=-1.771e+02;SOR=0.169;VQSLOD=8.54;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,22:36:99:616,0,418 1 44788398 rs161721 A T 1751.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-9.990e+02;SOR=0.960;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1780,132,0 1 45121018 rs59257919 T C 331.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.915;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.486;SB=0.00;SOR=0.627;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:14,13:27:99:360,0,472 1 45121045 rs11211020 T C 469.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=0.00;SOR=5.421;VQSLOD=8.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:498,42,0 1 45166513 rs2355710 T A 502.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.463;SB=0.00;SOR=0.641;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:18,17:35:99:531,0,592 1 45166790 . A G 579.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.825;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.568;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.26;ReadPosRankSum=1.688;SB=-1.970e+02;SOR=0.265;VQSLOD=8.27;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,23:38:99:608,0,429 1 45170012 rs12088087 A G 2280.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.05;SB=-8.690e+02;SOR=1.785;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2309,166,0 1 45205323 rs11211030 A G 79.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.98;ReadPosRankSum=0.204;SB=0.00;SOR=0.412;VQSLOD=9.34;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:99:108,0,206 1 45206451 rs11403922 G GT 44.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.98;RPA=20,21;RU=T;ReadPosRankSum=-0.857;SB=0.00;SOR=0.260;STR;VQSLOD=8.48;culprit=QD GT:AD:DP:GQ:PL 0/1:10,5:17:82:82,0,172 1 45223901 rs111920953 TATTAGCTG T 4007.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;DB;DP=98;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.500;MQ=60.11;MQ0=0;MQRankSum=1.105;POSITIVE_TRAIN_SITE;QD=16.89;RPA=2,1;RU=ATTAGCTG;ReadPosRankSum=-0.498;SB=-1.415e+03;SOR=0.495;STR;VQSLOD=0.482;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,41:98:99:4045,0,4948 1 45224757 rs16832228 G A 347.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.590;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=-0.214;SB=-4.076e+01;SOR=0.307;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:9,12:21:99:376,0,249 1 45224901 rs7524294 G A 1472.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.183;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=0.343;SB=-4.880e+02;SOR=0.726;VQSLOD=8.56;culprit=FS GT:AD:DP:GQ:PL 0/1:79,51:130:99:1501,0,2212 1 45225220 rs59630460 C T 401.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.675;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=6.185;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-1.609;SB=-9.732e-01;SOR=2.564;VQSLOD=5.38;culprit=FS GT:AD:DP:GQ:PL 0/1:14,14:28:99:430,0,454 1 45241113 rs11211031 T C 770.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.191;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.52;ReadPosRankSum=-1.233;SB=-1.070e+02;SOR=0.651;VQSLOD=8.88;culprit=FS GT:AD:DP:GQ:PL 0/1:19,25:44:99:799,0,597 1 45243957 rs74073404 A G 1442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.339;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=2.373;HaplotypeScore=2.7520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.59;ReadPosRankSum=-0.033;SB=-3.540e+02;SOR=0.342;VQSLOD=9.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,45:82:99:1471,0,1106 1 45267698 rs3795716 G C 1064.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.506;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.842;HaplotypeScore=6.0544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=-0.174;SB=-4.780e+02;SOR=0.488;VQSLOD=9.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,41:96:99:1093,0,1509 1 45277965 . G A 159.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.65;ReadPosRankSum=0.342;SB=-1.310e+02;SOR=0.892;VQSLOD=8.44;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:188,0,176 1 45278094 rs4073112 T C 147.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-1.834;SB=-7.100e+01;SOR=0.693;VQSLOD=10.05;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:176,0,101 1 45279519 . T C 384.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.067;HaplotypeScore=2.9151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.49;ReadPosRankSum=0.067;SB=-7.997e+01;SOR=0.148;VQSLOD=8.08;culprit=SOR GT:AD:DP:GQ:PL 0/1:9,13:22:99:413,0,289 1 45292866 rs2295996 G A 1236.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.706;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-0.869;SB=-6.940e+02;SOR=0.648;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:45,46:91:99:1265,0,1111 1 45293518 rs7525308 A G 1551.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.083;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.751;HaplotypeScore=3.6201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=1.214;SB=-9.000e+02;SOR=0.558;VQSLOD=9.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,55:101:99:1580,0,1260 1 45294156 rs2273940 T C 1167.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.149;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=2.713;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-0.170;SB=-6.590e+02;SOR=1.067;VQSLOD=7.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,48:94:99:1196,0,1230 1 45362992 rs263978 T C 252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.658;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.02;ReadPosRankSum=-0.887;SB=-1.190e+02;SOR=0.495;VQSLOD=9.38;culprit=QD GT:AD:DP:GQ:PL 0/1:31,11:42:99:281,0,809 1 45470130 rs7528534 T C 981.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.69;SB=-1.643e+02;SOR=3.098;VQSLOD=5.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:75:1010,75,0 1 45472798 rs147908761 TTGTGTGTG TTG,T 5519.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.28;RPA=15,12,11;RU=TG;SB=-1.730e+03;SOR=1.576;STR;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/2:0,31,38:85:99:5557,1456,1285,1325,0,1193 1 45473316 rs4660830 C T 451.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.75;SB=-4.276e+01;SOR=3.767;VQSLOD=7.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:480,36,0 1 45474157 rs2298006 G A 4084.77 PASS AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.01;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.4412;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.76;SB=-1.252e+03;SOR=2.133;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,121:122:99:4113,313,0 1 45475566 rs6429552 A G 2226.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.79;SB=-2.660e+02;SOR=3.841;VQSLOD=3.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:2255,166,0 1 45476069 rs7533668 C A 552.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.00;SB=-2.690e+02;SOR=0.818;VQSLOD=6.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:581,45,0 1 45479874 rs6698485 G T 2165.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.32;SB=-9.170e+02;SOR=1.437;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2194,163,0 1 45480733 rs6429553 C T 515.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.44;SB=-3.360e+02;SOR=0.874;VQSLOD=4.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:39:544,39,0 1 45500294 rs6671633 A G 1140.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-2.061e+02;SOR=3.258;VQSLOD=4.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:87:1169,87,0 1 45504720 rs7551698 G C 1552.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.06;SB=-5.800e+02;SOR=1.519;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1581,114,0 1 45524213 rs3738246 C T 2154.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.67;SB=-9.950e+02;SOR=1.214;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2183,169,0 1 45536004 rs346702 A G 1172.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.07;SB=-5.510e+02;SOR=1.236;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:87:1201,87,0 1 45796269 rs3219493 G C 701.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.764;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=-0.169;SB=-2.740e+02;SOR=0.557;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:29,26:55:99:730,0,767 1 45798555 rs3219487 T C 2500.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.833;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=1.264;HaplotypeScore=4.4100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=-0.722;SB=-1.017e+03;SOR=0.823;VQSLOD=8.15;culprit=DP GT:AD:DP:GQ:PL 0/1:72,91:163:99:2529,0,1837 1 45805566 rs3219468 G C 2020.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.0901;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.16;SB=-1.090e+03;SOR=1.066;VQSLOD=5.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2049,150,0 1 45880751 rs781230 C T 1044.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.02;SB=-5.930e+02;SOR=1.061;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:37:78:1073,78,0 1 45961955 rs937290 A G 186.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.78;ReadPosRankSum=0.090;SB=-6.500e+01;SOR=0.515;VQSLOD=9.65;culprit=QD GT:AD:DP:GQ:PL 0/1:15,9:24:99:215,0,430 1 45965307 rs12568144 G A 1823.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.861;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=3.098;HaplotypeScore=1.8318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=2.185;SB=-9.170e+02;SOR=0.457;VQSLOD=7.22;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:74,72:146:99:1852,0,1962 1 45965340 rs7546268 T C 1702.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.781;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=1.823;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-0.345;SB=-4.290e+02;SOR=0.964;VQSLOD=7.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,56:106:99:1731,0,1143 1 45965771 rs3748644 A G 171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=1.004;SB=-4.276e+01;SOR=0.399;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:200,0,122 1 45973435 . A AT 150.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;RPA=1,2;RU=T;ReadPosRankSum=-0.236;SB=-8.100e+01;SOR=0.368;STR;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:188,0,251 1 45973928 rs2275276 G A 1207.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.739;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=1.615;HaplotypeScore=5.5311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=-1.220;SB=-5.770e+02;SOR=0.902;VQSLOD=7.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,51:101:99:1236,0,1444 1 45981512 rs2356559 T C 809.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.001;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=1.189;SB=-5.320e+02;SOR=0.564;VQSLOD=9.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,33:57:99:838,0,679 1 45984353 rs10736426 G A 239.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.458;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=0.875;SB=-1.765e+00;SOR=1.802;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:268,0,244 1 46027355 rs512083 T C 971.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.982;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=-0.360;SB=-3.380e+02;SOR=0.776;VQSLOD=7.44;culprit=FS GT:AD:DP:GQ:PL 0/1:38,37:75:99:1000,0,927 1 46035760 rs3014216 A T 168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-0.682;SB=0.00;SOR=0.693;VQSLOD=10.35;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:197,0,229 1 46050004 rs57257530 TTCGG T 1210.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;DB;DP=47;ExcessHet=3.0103;FS=4.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.64;ReadPosRankSum=0.896;SB=-4.920e+02;SOR=0.223;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 0/1:26,18:47:99:1248,0,1891 1 46057144 rs2991981 A G 74.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.48;ReadPosRankSum=1.026;SB=-2.901e+01;SOR=0.368;VQSLOD=9.13;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:99:103,0,167 1 46065998 rs3014211 T C 1058.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-4.870e+02;SOR=1.483;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:78:1087,78,0 1 46073489 rs2230657 G A 805.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.831;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=0.844;SB=-4.390e+02;SOR=0.838;VQSLOD=6.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,33:86:99:834,0,1432 1 46078630 rs2050376 A G 57.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.81;ReadPosRankSum=-0.901;SB=0.00;SOR=0.269;VQSLOD=9.66;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:86:86,0,280 1 46078854 rs2230658 A G 735.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.672;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=6.617;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-1.279;SB=-3.710e+02;SOR=0.836;VQSLOD=5.84;culprit=FS GT:AD:DP:GQ:PL 0/1:35,31:66:99:764,0,965 1 46078884 rs2230659 C T 771.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.377;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=13.824;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.976;SB=-2.010e+02;SOR=2.216;VQSLOD=4.95;culprit=FS GT:AD:DP:GQ:PL 0/1:37,29:66:99:800,0,859 1 46080300 rs3014248 A T 133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-1.072;SB=0.00;SOR=0.551;VQSLOD=9.16;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:162,0,193 1 46080530 rs2991985 T C 520.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.616;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.998;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=-1.540;SB=-6.800e+01;SOR=1.519;VQSLOD=5.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,18:32:99:549,0,326 1 46080947 rs1972410 A C 656.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.388;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.036;SB=-4.000e+02;SOR=0.317;VQSLOD=10.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,26:53:99:685,0,723 1 46081940 rs2356581 T A 1855.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.70;SB=-1.168e+03;SOR=0.723;VQSLOD=5.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:1884,144,0 1 46081960 rs2253862 C T 781.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.940;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=-0.328;SB=-4.880e+02;SOR=0.616;VQSLOD=8.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,31:66:99:810,0,859 1 46082431 rs2991988 C A 1359.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.664;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.789;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=0.448;SB=-8.400e+02;SOR=0.570;VQSLOD=9.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,57:95:99:1388,0,926 1 46085852 rs2275085 C T 295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.309;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-0.548;SB=-6.100e+01;SOR=0.465;VQSLOD=10.38;culprit=FS GT:AD:DP:GQ:PL 0/1:14,11:25:99:324,0,428 1 46085879 rs2275086 C G 464.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.035;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-0.782;SB=-1.660e+02;SOR=0.760;VQSLOD=10.06;culprit=FS GT:AD:DP:GQ:PL 0/1:21,16:37:99:493,0,574 1 46086077 rs3014246 C T 1594.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.486;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=2.247;HaplotypeScore=2.5929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-0.024;SB=-9.420e+02;SOR=0.745;VQSLOD=7.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,64:127:99:1623,0,1679 1 46086913 rs3014245 C T 807.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.117;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.166;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.19;ReadPosRankSum=-1.335;SB=-3.300e+02;SOR=1.051;VQSLOD=7.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,27:47:99:836,0,509 1 46087577 rs3014242 G A 627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=12.163;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=0.365;SB=-2.930e+02;SOR=0.606;VQSLOD=5.94;culprit=FS GT:AD:DP:GQ:PL 0/1:36,23:60:99:656,0,1075 1 46087879 rs3014241 A G 1457.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.931;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=1.479;HaplotypeScore=2.6221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.241;SB=-7.160e+02;SOR=0.852;VQSLOD=8.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,53:117:99:1486,0,1665 1 46089225 rs3014240 C G 1195.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.703;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=1.792;HaplotypeScore=4.9844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-0.485;SB=-7.720e+02;SOR=0.436;VQSLOD=9.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,46:87:99:1224,0,1038 1 46094027 rs1250 A G 2570.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SB=-1.157e+03;SOR=1.387;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2599,187,0 1 46095272 rs1135812 T C 1430.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=1.737;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-0.869;SB=-6.970e+02;SOR=0.498;VQSLOD=9.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,57:103:99:1459,0,1173 1 46095976 rs6703748 G A 499.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.417;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=2.358;SB=-6.400e+01;SOR=1.022;VQSLOD=8.91;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:19,18:37:99:528,0,592 1 46096402 rs10708598 AT A 567.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;RPA=7,6;RU=T;ReadPosRankSum=1.084;SB=-1.990e+02;SOR=0.770;STR;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 0/1:18,25:45:99:605,0,436 1 46096442 rs10708597 CA C 508.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.96;RPA=4,3;RU=A;ReadPosRankSum=-0.572;SB=-1.190e+02;SOR=0.892;STR;VQSLOD=9.98;culprit=FS GT:AD:DP:GQ:PL 0/1:12,18:30:99:546,0,333 1 46105725 . G GA 90.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.98;RPA=12,13;RU=A;ReadPosRankSum=0.786;SB=0.00;SOR=1.179;STR;VQSLOD=8.87;culprit=QD GT:AD:DP:GQ:PL 0/1:5,8:13:83:128,0,83 1 46124663 rs6671802 A G 1223.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.509;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=2.039;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=1.904;SB=-3.240e+02;SOR=1.082;VQSLOD=7.00;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:44,48:92:99:1252,0,1161 1 46159014 . A T 1135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;DP=87;Dels=0.00;ExcessHet=3.0103;FS=2.811;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.05;ReadPosRankSum=1.346;SB=-5.970e+02;SOR=0.446;VQSLOD=8.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,40:87:99:1164,0,1301 1 46160260 rs6658700 C T 468.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.598;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=-0.356;SB=-1.990e+02;SOR=0.693;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:25,19:44:99:497,0,617 1 46166861 rs4564187 G C 238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.290;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.24;ReadPosRankSum=-0.431;SB=-1.200e+02;SOR=1.406;VQSLOD=5.89;culprit=QD GT:AD:DP:GQ:PL 0/1:21,12:33:99:267,0,591 1 46166956 . C CT 125.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;DP=21;ExcessHet=3.0103;FS=4.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.29;RPA=10,11;RU=T;ReadPosRankSum=-0.077;SB=-1.227e+01;SOR=2.303;STR;VQSLOD=4.22;culprit=QD GT:AD:DP:GQ:PL 0/1:12,8:21:99:163,0,262 1 46195211 rs139068713 TAAC T 746.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.395;DB;DP=44;ExcessHet=3.0103;FS=1.614;MLEAC=1;MLEAF=0.500;MQ=60.25;MQ0=0;MQRankSum=1.324;POSITIVE_TRAIN_SITE;QD=17.78;RPA=2,1;RU=AAC;ReadPosRankSum=-0.311;SB=-8.600e+01;SOR=1.051;STR;VQSLOD=0.513;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,16:44:99:784,0,1388 1 46195375 rs28375469 T C 1375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.092;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=2.891;HaplotypeScore=3.7329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=0.012;SB=-8.370e+02;SOR=0.434;VQSLOD=10.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,56:93:99:1404,0,943 1 46206540 rs28507722 A G 448.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.489;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.70;ReadPosRankSum=-0.572;SB=-1.000e+02;SOR=0.495;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:7,17:24:99:477,0,186 1 46290311 rs10561161 GTA G 1307.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;DB;DP=62;ExcessHet=3.0103;FS=2.852;MLEAC=1;MLEAF=0.500;MQ=60.17;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.67;RPA=2,1;RU=TA;ReadPosRankSum=-1.284;SB=-3.700e+02;SOR=0.342;STR;VQSLOD=7.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,30:62:99:1345,0,1010 1 46347875 rs56242896 A T 123.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=8.625;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.88;ReadPosRankSum=2.313;SB=-7.697e+01;SOR=0.027;VQSLOD=4.27;culprit=QD GT:AD:DP:GQ:PL 0/1:11,7:18:99:152,0,372 1 46347876 rs11211216 A T 297.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=7.375;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.54;ReadPosRankSum=-2.759;SB=-9.732e-01;SOR=3.145;VQSLOD=3.21;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:8,10:18:99:326,0,194 1 46347878 rs201525530 AT A 453.73 PASS AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.21;SB=-1.065e+02;SOR=2.833;VQSLOD=5.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:53:491,53,0 1 46347910 rs6665193 G A 1057.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.06;SB=-1.901e+02;SOR=3.126;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:87:1086,87,0 1 46348229 rs11211217 C G 186.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.18;ReadPosRankSum=-0.806;SB=-2.801e+01;SOR=0.404;VQSLOD=9.39;culprit=QD GT:AD:DP:GQ:PL 0/1:18,8:26:99:215,0,595 1 46379518 rs4256763 A G 2844.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5452;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.61;SB=-1.607e+03;SOR=0.738;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2873,217,0 1 46424864 rs34102169 G T 406.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.504;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=-1.432;SB=-2.070e+02;SOR=1.371;VQSLOD=6.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,17:27:99:435,0,272 1 46424964 rs4460582 G A 1518.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.02;SB=-6.310e+02;SOR=1.464;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:47:99:1547,117,0 1 46466721 rs11589562 T C 1242.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.709;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=-0.243;SB=-8.130e+02;SOR=0.813;VQSLOD=8.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,51:109:99:1271,0,1514 1 46472153 rs6429592 G A 802.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-4.176e+01;SOR=4.804;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:63:831,63,0 1 46473902 rs3922886 A T 337.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.934;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=-1.387;SB=-1.030e+02;SOR=0.368;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 0/1:9,14:23:99:366,0,263 1 46476587 rs11211247 T G 3949.77 PASS AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=-1.907e+03;SOR=1.347;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,127:127:99:3978,286,0 1 46485548 rs946529 G T 86.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.307;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.78;ReadPosRankSum=1.595;SB=-3.976e+01;SOR=0.050;VQSLOD=8.10;culprit=QD GT:AD:DP:GQ:PL 0/1:10,5:15:99:115,0,361 1 46485562 rs946528 C T 105.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=0.175;SB=-3.976e+01;SOR=0.120;VQSLOD=9.37;culprit=SOR GT:AD:DP:GQ:PL 0/1:6,5:11:99:134,0,183 1 46487552 rs2275426 G A 1622.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.162;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=1.585;HaplotypeScore=1.9981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=0.664;SB=-7.360e+02;SOR=0.518;VQSLOD=9.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,61:115:99:1651,0,1523 1 46487560 rs946524 A G 1786.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.341;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=1.459;HaplotypeScore=1.8305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=0.967;SB=-9.410e+02;SOR=0.519;VQSLOD=9.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,68:128:99:1815,0,1634 1 46491635 rs785478 C T 971.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.603;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.394;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=-0.201;SB=-2.000e+02;SOR=0.474;VQSLOD=9.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,35:59:99:1000,0,697 1 46493460 rs1707336 T G 1030.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.839;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-0.875;SB=-6.600e+02;SOR=0.653;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:43,42:85:99:1059,0,1056 1 46496709 rs925524 A G 898.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=4.212;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=1.001;SB=-5.490e+02;SOR=0.485;VQSLOD=7.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,35:81:99:927,0,1161 1 46497500 rs9429088 T A 447.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.273;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=1.809;SB=-1.020e+02;SOR=0.693;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:16,16:32:99:476,0,488 1 46498375 rs1622208 A G 1015.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.851;HaplotypeScore=3.4020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-1.554;SB=-3.920e+02;SOR=0.927;VQSLOD=7.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,37:90:99:1044,0,1323 1 46511487 rs2297883 G C 251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.98;ReadPosRankSum=-0.084;SB=0.00;SOR=1.445;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:99:280,0,104 1 46521517 rs785468 G A 357.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.572;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.473;HaplotypeScore=2.5141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=-0.244;SB=-1.580e+02;SOR=0.957;VQSLOD=6.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,15:27:99:386,0,318 1 46521559 rs785467 A T 277.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.871;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-1.947;SB=-8.900e+01;SOR=1.518;VQSLOD=5.86;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:12,10:22:99:306,0,243 1 46532785 . C T 854.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.701;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.19;ReadPosRankSum=-0.422;SB=-2.440e+02;SOR=0.693;VQSLOD=8.38;culprit=FS GT:AD:DP:GQ:PL 0/1:15,32:47:99:883,0,387 1 46546208 rs1768803 T C 62.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.23;ReadPosRankSum=1.960;SB=-1.765e+00;SOR=0.582;VQSLOD=8.29;culprit=QD GT:AD:DP:GQ:PL 0/1:9,3:12:91:91,0,243 1 46598269 rs1707304 C A 421.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.523;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=1.606;SB=-1.240e+02;SOR=1.204;VQSLOD=7.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,17:32:99:450,0,374 1 46598273 rs1707303 A C 485.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.174;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.475;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=0.474;SB=-1.640e+02;SOR=1.179;VQSLOD=7.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,19:33:99:514,0,368 1 46641827 rs12030928 A G 435.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.762;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.27;ReadPosRankSum=2.028;SB=-6.000e+01;SOR=0.922;VQSLOD=8.46;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:30,17:47:99:464,0,930 1 46655158 rs6659553 T C 3121.77 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-1.971e+03;SOR=0.833;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:105:99:3150,229,0 1 46658910 POMGNT1 G A 4950.77 PASS AC=2;AF=1.00;AN=2;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.12;SB=-2.909e+03;SOR=0.843;VQSLOD=5.15;culprit=DP GT:AD:DP:GQ:PL 1/1:0,170:170:99:4979,367,0 1 46726057 rs2295465 A C 562.18 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.178;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.59;ReadPosRankSum=-1.095;SB=-2.421e+02;SOR=0.622;VQSLOD=8.10;culprit=FS GT:AD:DP:GQ:PL 1/1:1,18:19:10:590,10,0 1 46743900 rs1048771 C T 2176.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.49;SB=-6.010e+02;SOR=2.412;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2205,172,0 1 46746164 rs11542623 C T 2572.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-8.200e+02;SOR=2.026;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2601,193,0 1 46827214 rs324414 A C 1159.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.06;SB=-1.165e+02;SOR=4.047;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:87:1188,87,0 1 46827456 rs9865 A G 3530.77 PASS AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;SB=-2.047e+03;SOR=0.884;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,112:112:99:3559,256,0 1 46871986 rs324419 T C 3568.77 PASS AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.74;SB=-1.848e+03;SOR=0.991;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,120:120:99:3597,262,0 1 46972605 rs12127101 T A 1389.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.767;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.928;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-0.696;SB=-3.000e+02;SOR=0.838;VQSLOD=7.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,50:104:99:1418,0,1469 1 46972958 rs35270239 A G 446.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.213;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.31;ReadPosRankSum=0.616;SB=0.00;SOR=1.329;VQSLOD=10.17;culprit=FS GT:AD:DP:GQ:PL 0/1:8,14:22:99:475,0,249 1 46976530 rs12045200 C G 613.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.046;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=4.058;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-1.145;SB=-6.300e+01;SOR=1.732;VQSLOD=6.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,23:43:99:642,0,524 1 46976717 rs12045245 C T 2010.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.712;DB;DP=166;Dels=0.00;ExcessHet=3.0103;FS=0.576;HaplotypeScore=8.4120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.632;SB=-1.074e+03;SOR=0.747;VQSLOD=7.92;culprit=DP GT:AD:DP:GQ:PL 0/1:86,77:166:99:2039,0,2135 1 47013364 rs1258041 T C 1264.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=-1.225e+02;SOR=4.351;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1293,105,0 1 47025839 rs3831020 GC G 691.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQ0=0;MQRankSum=0.855;POSITIVE_TRAIN_SITE;QD=19.21;RPA=5,4;RU=C;ReadPosRankSum=0.341;SB=-2.630e+02;SOR=0.693;STR;VQSLOD=3.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,22:36:99:729,0,435 1 47059934 rs1258021 T C 2426.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.59;SB=-1.349e+03;SOR=1.151;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2455,184,0 1 47078637 rs4660947 T C 7930.77 PASS AC=2;AF=1.00;AN=2;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SB=-3.518e+03;SOR=1.193;VQSLOD=4.03;culprit=DP GT:AD:DP:GQ:PL 1/1:0,247:250:99:7959,593,0 1 47080679 rs6671527 G A 1374.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.64;SB=-6.300e+02;SOR=1.562;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1403,102,0 1 47099346 rs723333 C A 729.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;SB=-1.841e+02;SOR=2.494;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:758,60,0 1 47108828 rs736188 T C 1308.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.44;SB=-2.221e+02;SOR=3.145;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1337,99,0 1 47109089 rs1745377 A G 378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.292;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-0.489;SB=-4.276e+01;SOR=0.096;VQSLOD=9.60;culprit=SOR GT:AD:DP:GQ:PL 0/1:21,14:35:99:407,0,740 1 47110766 . G GC 5049.73 PASS AC=2;AF=1.00;AN=2;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.97;RPA=1,2;RU=C;SB=-1.695e+03;SOR=1.588;STR;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,111:112:99:5087,334,0 1 47118067 rs620913 G A 144.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.691;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.89;ReadPosRankSum=0.818;SB=-1.765e+00;SOR=0.627;VQSLOD=9.22;culprit=QD GT:AD:DP:GQ:PL 0/1:15,6:21:99:173,0,448 1 47118096 rs2289446 C A 263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.416;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.54;ReadPosRankSum=0.987;SB=-9.732e-01;SOR=1.061;VQSLOD=7.78;culprit=QD GT:AD:DP:GQ:PL 0/1:25,10:35:99:292,0,844 1 47118189 rs620431 G T 961.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.983;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=2.972;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=0.972;SB=-2.920e+02;SOR=1.099;VQSLOD=6.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,37:92:99:990,0,1497 1 47123898 rs67089539 T TA 159.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;DB;DP=28;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.26;RPA=15,16;RU=A;ReadPosRankSum=0.361;SB=-1.776e+00;SOR=1.751;STR;VQSLOD=5.39;culprit=QD GT:AD:DP:GQ:PL 0/1:11,11:28:99:197,0,159 1 47124204 . C CA 678.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.89;RPA=3,4;RU=A;ReadPosRankSum=0.248;SB=-2.870e+02;SOR=0.693;STR;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:8,23:33:99:716,0,180 1 47124479 rs611468 A G 390.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.030;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=-1.334;SB=-2.170e+02;SOR=0.324;VQSLOD=9.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,18:41:99:419,0,620 1 47130873 rs594118 A G 480.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.626;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.407;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=-0.944;SB=-2.180e+02;SOR=0.465;VQSLOD=9.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,19:35:99:509,0,391 1 47133811 rs11211337 T C 92.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.398;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.73;ReadPosRankSum=0.078;SB=-2.801e+01;SOR=1.609;VQSLOD=5.35;culprit=QD GT:AD:DP:GQ:PL 0/1:7,5:12:99:121,0,175 1 47138444 rs616249 C T 1462.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.83;SB=-1.373e+02;SOR=4.125;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1491,120,0 1 47138819 rs614486 T G 3297.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=11.489;DB;DP=248;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-0.309;SB=-1.476e+03;SOR=0.724;VQSLOD=5.73;culprit=DP GT:AD:DP:GQ:PL 0/1:131,117:248:99:3326,0,3464 1 47139103 rs1025806 C T 1929.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.073;DB;DP=161;Dels=0.00;ExcessHet=3.0103;FS=5.680;HaplotypeScore=7.5225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-0.822;SB=-9.870e+02;SOR=1.025;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 0/1:80,81:161:99:1958,0,2027 1 47154272 rs2304745 C T 276.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.992;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=1.179;SB=-1.765e+00;SOR=1.352;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:13,10:23:99:305,0,416 1 47155462 rs2241862 G A 344.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.873;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=-0.057;SB=-2.901e+01;SOR=0.927;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:18,14:32:99:373,0,571 1 47181920 rs10718376 CA C 53.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.80;MQ0=0;MQRankSum=1.464;POSITIVE_TRAIN_SITE;QD=2.99;RPA=26,25;RU=A;ReadPosRankSum=-1.432;SB=0.00;SOR=0.512;STR;VQSLOD=2.86;culprit=QD GT:AD:DP:GQ:PL 0/1:10,8:19:91:91,0,151 1 47182206 rs3737731 C T 149.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.863;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.13;ReadPosRankSum=1.642;SB=-1.765e+00;SOR=0.836;VQSLOD=9.32;culprit=QD GT:AD:DP:GQ:PL 0/1:14,7:21:99:178,0,513 1 47276728 rs2297812 G C 1065.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.735;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=2.970;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-0.481;SB=-5.880e+02;SOR=0.394;VQSLOD=9.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,41:87:99:1094,0,1331 1 47278997 rs4646486 T C 318.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.986;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=-0.579;SB=-3.876e+01;SOR=0.269;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:347,0,257 1 47279175 rs4646487 C T 1018.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=2.546;HaplotypeScore=2.6457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=0.252;SB=-5.650e+02;SOR=0.844;VQSLOD=7.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,42:107:99:1047,0,1614 1 47279558 rs4646489 CCCT C 2285.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;DB;DP=113;ExcessHet=3.0103;FS=2.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.41;RPA=3,2;RU=CCT;ReadPosRankSum=0.506;SB=-7.970e+02;SOR=0.967;STR;VQSLOD=5.28;culprit=QD GT:AD:DP:GQ:PL 0/1:66,46:113:99:2323,0,3546 1 47279789 rs2297811 C T 1701.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.014;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=2.402;HaplotypeScore=4.3747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=0.907;SB=-9.240e+02;SOR=0.895;VQSLOD=7.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,65:116:99:1730,0,1474 1 47280085 rs4646490 C CCT 962.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;DB;DP=35;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.32;RPA=1,2;RU=CT;ReadPosRankSum=0.035;SB=-2.370e+02;SOR=0.407;STR;VQSLOD=5.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,21:35:99:1000,0,481 1 47283505 rs4646495 G T 1336.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.274;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=2.565;HaplotypeScore=4.9326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.360;SB=-7.250e+02;SOR=0.448;VQSLOD=9.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,53:108:99:1365,0,1504 1 47284526 rs3766196 C A 303.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.379;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.078;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-0.623;SB=-9.732e-01;SOR=2.030;VQSLOD=6.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,11:26:99:332,0,454 1 47309265 rs10749865 A G 398.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.187;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=1.913;SB=0.00;SOR=0.874;VQSLOD=9.88;culprit=FS GT:AD:DP:GQ:PL 0/1:10,12:22:99:427,0,325 1 47311123 rs11584320 G A 93.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.52;ReadPosRankSum=1.489;SB=0.00;SOR=0.330;VQSLOD=9.09;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:99:122,0,235 1 47325299 rs11328022 TA T 185.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQ0=0;MQRankSum=1.302;POSITIVE_TRAIN_SITE;QD=5.63;RPA=13,12;RU=A;ReadPosRankSum=0.221;SB=-9.300e+01;SOR=0.732;STR;VQSLOD=3.17;culprit=QD GT:AD:DP:GQ:PL 0/1:20,13:35:99:223,0,429 1 47333836 rs4660963 G C 773.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-1.245e+02;SOR=3.528;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:802,60,0 1 47366050 rs12032026 G T 1231.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.294;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=58.74;MQ0=0;MQRankSum=0.873;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-0.535;SB=-5.980e+02;SOR=0.771;VQSLOD=2.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,52:97:99:1260,0,1244 1 47395973 rs1126743 G A 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.771;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-0.292;SB=-1.620e+02;SOR=0.223;VQSLOD=9.65;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,13:27:99:315,0,423 1 47398743 rs3890011 G C 1782.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.598;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=2.290;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=1.058;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-0.162;SB=-9.800e+02;SOR=0.866;VQSLOD=0.477;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,64:123:99:1811,0,1674 1 47401466 rs2269232 T C 414.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.344;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=-2.632;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=0.070;SB=-2.901e+01;SOR=0.997;VQSLOD=2.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,17:45:99:443,0,847 1 47402487 . TTG T 1900.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560;DP=139;ExcessHet=3.0103;FS=3.113;MLEAC=1;MLEAF=0.500;MQ=60.08;MQ0=0;MQRankSum=0.889;POSITIVE_TRAIN_SITE;QD=19.01;RPA=14,13;RU=TG;ReadPosRankSum=0.199;SB=-5.200e+02;SOR=0.404;STR;VQSLOD=0.572;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,57:139:99:1938,0,1466 1 47495605 rs17102977 A G 254.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.936;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.20;ReadPosRankSum=1.337;SB=-1.766e+00;SOR=2.303;VQSLOD=5.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,8:14:99:283,0,140 1 47495822 rs12141009 C T 472.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.374;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.39;ReadPosRankSum=0.728;SB=-2.540e+02;SOR=0.880;VQSLOD=8.53;culprit=QD GT:AD:DP:GQ:PL 0/1:41,23:64:99:501,0,1156 1 47496983 rs12041262 C A 314.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.952;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.48;ReadPosRankSum=1.064;SB=-3.976e+01;SOR=0.693;VQSLOD=9.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,10:14:99:343,0,122 1 47497037 rs11211420 G A 385.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.305;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=-0.140;SB=-8.500e+01;SOR=1.670;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 0/1:20,14:34:99:414,0,424 1 47504217 rs2221324 A G 275.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.026;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=0.770;SB=-1.766e+00;SOR=1.214;VQSLOD=9.16;culprit=FS GT:AD:DP:GQ:PL 0/1:13,9:22:99:304,0,359 1 47504936 rs2292060 C A 974.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.450;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.11;ReadPosRankSum=0.907;SB=-3.401e+01;SOR=1.345;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:19,32:51:99:1003,0,551 1 47515563 . G GA 758.73 PASS AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.35;RPA=5,6;RU=A;SB=-1.035e+02;SOR=3.528;STR;VQSLOD=5.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:75:796,75,0 1 47515596 rs1393659 A C 1635.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.72;SB=-4.520e+02;SOR=2.494;VQSLOD=5.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1664,120,0 1 47515745 . G A 1778.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.152;DP=128;Dels=0.00;ExcessHet=3.0103;FS=2.250;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.90;ReadPosRankSum=-0.507;SB=-1.213e+03;SOR=0.622;VQSLOD=7.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,74:128:99:1807,0,1309 1 47534107 rs2055500 A T 1145.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.29;SB=-3.577e+01;SOR=5.421;VQSLOD=4.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:87:1174,87,0 1 47540548 rs146654636 C T 558.74 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.209;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.95;MQ0=1;MQRankSum=0.417;QD=19.27;ReadPosRankSum=-0.371;SB=-1.310e+02;SOR=1.022;VQSLOD=2.68;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:3,26:29:6:586,6,0 1 47571902 rs4926802 C T 947.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.94;SB=-6.710e+02;SOR=0.798;VQSLOD=5.12;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,38:38:69:976,69,0 1 47571905 rs28463559 C T 952.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.07;SB=-6.940e+02;SOR=0.798;VQSLOD=4.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:69:981,69,0 1 47571943 rs149137568 CTTT C 711.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.279;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-1.101;POSITIVE_TRAIN_SITE;QD=35.15;RPA=16,13;RU=T;ReadPosRankSum=1.389;SB=-2.291e+02;SOR=0.941;STR;VQSLOD=2.45;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,19:27:35:749,35,0 1 47571996 rs4926804 T C 468.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-1.225e+02;SOR=2.448;VQSLOD=5.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:497,36,0 1 47581122 rs7547893 A T 715.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.83;SB=0.00;SOR=5.994;VQSLOD=7.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:744,57,0 1 47582242 rs145561171 ATTTCGT A 788.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=0.809;POSITIVE_TRAIN_SITE;QD=24.65;ReadPosRankSum=1.248;SB=-2.320e+02;SOR=1.347;VQSLOD=3.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,11:16:99:826,0,133 1 47582292 rs10890465 T G 974.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.81;SB=-2.750e+02;SOR=1.863;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:1003,72,0 1 47583321 . G GA 249.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.87;RPA=9,10;RU=A;ReadPosRankSum=0.989;SB=0.00;SOR=1.493;STR;VQSLOD=9.20;culprit=FS GT:AD:DP:GQ:PL 0/1:6,12:18:99:287,0,100 1 47583415 rs6664496 G T 2624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-9.500e+02;SOR=1.995;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2653,196,0 1 47602943 rs11578285 G A 253.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.83;MQ0=0;MQRankSum=-0.253;POSITIVE_TRAIN_SITE;QD=25.38;ReadPosRankSum=0.140;SB=0.00;SOR=2.303;VQSLOD=6.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,8:10:49:282,0,49 1 47603033 rs34164833 GT G 1339.73 PASS AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;RPA=2,1;RU=T;SB=-2.721e+02;SOR=2.694;STR;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:93:1377,93,0 1 47607281 rs12564525 C T 1164.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.763;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=-1.104;SB=-4.090e+02;SOR=0.599;VQSLOD=8.89;culprit=FS GT:AD:DP:GQ:PL 0/1:57,47:104:99:1193,0,1415 1 47607547 rs12404941 C G 45.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.81;ReadPosRankSum=0.000;SB=0.00;SOR=0.148;VQSLOD=9.12;culprit=QD GT:AD:DP:GQ:PL 0/1:9,3:12:74:74,0,323 1 47607641 rs11211465 C T 1307.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.799;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=4.091;HaplotypeScore=4.5300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-0.264;SB=-1.360e+02;SOR=1.365;VQSLOD=6.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,46:95:99:1336,0,1441 1 47607762 rs2056901 T C 3096.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=13.113;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-0.890;SB=-1.769e+03;SOR=0.668;VQSLOD=5.85;culprit=DP GT:AD:DP:GQ:PL 0/1:136,114:250:99:3125,0,3401 1 47607851 rs2056899 A T 7224.77 PASS AC=2;AF=1.00;AN=2;DB;DP=241;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4093;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=-3.517e+03;SOR=1.385;VQSLOD=4.06;culprit=DP GT:AD:DP:GQ:PL 1/1:0,241:241:99:7253,545,0 1 47609489 rs10789501 T C 5276.77 PASS AC=2;AF=1.00;AN=2;DB;DP=176;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=-3.175e+03;SOR=0.716;VQSLOD=6.51;culprit=DP GT:AD:DP:GQ:PL 1/1:0,176:176:99:5305,397,0 1 47609668 rs911909 T C 1877.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-5.770e+02;SOR=2.342;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1906,141,0 1 47610065 rs149718343 A C 1440.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.015;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=2.102;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.90;MQ0=4;MQRankSum=-0.544;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=-0.919;SB=-2.400e+02;SOR=0.984;VQSLOD=0.153;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,48:95:99:1469,0,1164 1 47610680 rs186919328 C A 706.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.208;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=2.310;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=-0.723;SB=-1.820e+02;SOR=1.061;VQSLOD=7.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,27:71:99:735,0,1149 1 47611598 rs2405599 T C 2068.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.126;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6492;MLEAC=1;MLEAF=0.500;MQ=58.90;MQ0=0;MQRankSum=-4.456;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=-0.590;SB=-1.191e+03;SOR=0.680;VQSLOD=0.141;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:68,74:142:99:2097,0,1960 1 47652870 . CCTTGAG C 2170.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.230;DP=49;ExcessHet=3.0103;FS=1.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.15;ReadPosRankSum=2.385;SB=-3.400e+02;SOR=0.332;VQSLOD=7.51;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:23,26:49:99:2208,0,929 1 47652877 . C A 686.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.597;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.753;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.47;ReadPosRankSum=2.677;SB=-1.330e+02;SOR=0.286;VQSLOD=7.15;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:25,26:51:99:715,0,834 1 47652879 rs60327556 T A 798.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.114;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=5.894;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.52;ReadPosRankSum=2.007;SB=-1.910e+02;SOR=0.156;VQSLOD=7.64;culprit=FS GT:AD:DP:GQ:PL 0/1:26,29:55:99:827,0,859 1 47655816 rs2248907 A G 376.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.83;SB=0.00;SOR=4.804;VQSLOD=8.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:405,30,0 1 47685455 rs927462 T C 2419.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.47;SB=-1.177e+03;SOR=1.528;VQSLOD=4.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2448,172,0 1 47717189 . A G 930.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.558;DP=75;Dels=0.00;ExcessHet=3.0103;FS=4.538;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.41;ReadPosRankSum=-1.726;SB=-3.940e+02;SOR=1.308;VQSLOD=5.39;culprit=FS GT:AD:DP:GQ:PL 0/1:40,35:75:99:959,0,1080 1 47735280 rs2742104 T C 352.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.426;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.969;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=0.175;SB=-5.000e+01;SOR=2.012;VQSLOD=6.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,13:29:99:381,0,393 1 47746678 rs10789505 G C 2146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.013;DB;DP=182;Dels=0.00;ExcessHet=3.0103;FS=5.258;HaplotypeScore=4.6634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=0.925;SB=-1.116e+03;SOR=0.899;VQSLOD=5.67;culprit=DP GT:AD:DP:GQ:PL 0/1:95,87:182:99:2175,0,2502 1 47753405 rs12125261 G A 624.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.273;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.404;HaplotypeScore=3.6171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=2.034;SB=-2.010e+02;SOR=0.379;VQSLOD=9.73;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:23,24:48:99:653,0,658 1 47765490 rs9436838 T C 277.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.952;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=-1.470;SB=0.00;SOR=0.941;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:306,0,225 1 47767141 rs6689687 C A 249.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=-1.040;SB=0.00;SOR=0.941;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:278,0,238 1 47767914 rs3125630 G A 1128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.262;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.895;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.338;SB=-4.000e+02;SOR=0.877;VQSLOD=8.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,44:83:99:1157,0,978 1 47770441 rs3122615 A C 206.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.470;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=-1.019;SB=0.00;SOR=0.582;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:235,0,267 1 47770466 rs3122616 T C 374.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.139;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-0.564;SB=0.00;SOR=0.693;VQSLOD=9.91;culprit=FS GT:AD:DP:GQ:PL 0/1:13,13:26:99:403,0,427 1 47770786 rs6692734 T A 330.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=1.103;SB=-3.976e+01;SOR=0.307;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:9,12:21:99:359,0,272 1 47834209 rs35687416 G T 1460.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.149;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=2.674;HaplotypeScore=4.3653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=-1.145;SB=-6.960e+02;SOR=0.998;VQSLOD=7.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,59:99:99:1489,0,984 1 47841038 . G GA 424.73 PASS AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=28.32;RPA=7,8;RU=A;SB=-1.223e+02;SOR=1.911;STR;VQSLOD=4.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:19:45:462,45,0 1 47842431 rs3125648 G A 590.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=-2.441e+02;SOR=1.609;VQSLOD=4.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:45:619,45,0 1 47842666 rs2820981 A T 705.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.14;SB=-3.110e+02;SOR=1.528;VQSLOD=4.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:54:734,54,0 1 47904668 rs71881780 T TCCGCAC 1183.73 PASS AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.18;RPA=3,4;RU=CCGCAC;SB=-5.440e+02;SOR=0.818;STR;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:18:45:1221,45,0 1 48260462 . GT G 182.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQ0=0;MQRankSum=0.898;POSITIVE_TRAIN_SITE;QD=7.31;RPA=22,21;RU=T;ReadPosRankSum=-0.334;SB=-2.677e+01;SOR=0.382;STR;VQSLOD=3.21;culprit=QD GT:AD:DP:GQ:PL 0/1:10,15:42:80:220,0,80 1 48459907 rs3814006 C T 3518.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.909;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.462;HaplotypeScore=3.4941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=0.794;SB=-1.835e+03;SOR=0.643;VQSLOD=6.38;culprit=DP GT:AD:DP:GQ:PL 0/1:130,120:250:99:3547,0,3472 1 48695081 rs212989 G A 1116.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.473;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.781;HaplotypeScore=3.6269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-0.635;SB=-5.360e+02;SOR=0.857;VQSLOD=8.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,42:97:99:1145,0,1547 1 48697733 rs212991 T G 1899.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.64;SB=-1.228e+03;SOR=0.693;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1928,138,0 1 48701567 rs6694372 C T 437.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.184;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=7.834;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.58;ReadPosRankSum=0.766;SB=-2.330e+02;SOR=0.114;VQSLOD=7.49;culprit=QD GT:AD:DP:GQ:PL 0/1:30,21:51:99:466,0,891 1 48707838 rs705430 A G 964.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.352;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=3.252;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=-1.633;SB=-8.100e+01;SOR=1.725;VQSLOD=5.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,31:64:99:993,0,879 1 48708228 rs850763 G T 188.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.629;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-1.199;SB=-6.700e+01;SOR=0.165;VQSLOD=9.68;culprit=SOR GT:AD:DP:GQ:PL 0/1:11,8:19:99:217,0,387 1 48861113 . C A 466.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.265;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.14;ReadPosRankSum=-0.636;SB=-1.340e+02;SOR=0.468;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 0/1:12,21:33:99:495,0,381 1 48902301 rs2251338 T C 890.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.626;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.222;HaplotypeScore=3.7819;MLEAC=1;MLEAF=0.500;MQ=57.42;MQ0=0;MQRankSum=-0.253;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=0.509;SB=-3.480e+02;SOR=1.251;VQSLOD=0.098;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,31:63:99:919,0,829 1 48902977 rs2261674 G C 454.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=-7.297e+01;SOR=2.448;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:483,36,0 1 48937559 rs72897239 C T 273.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.06;ReadPosRankSum=0.339;SB=-9.805e+01;SOR=1.022;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:3,10:14:55:302,0,55 1 48937574 rs113124826 G A 282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.275;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.67;ReadPosRankSum=0.243;SB=-1.810e+02;SOR=0.368;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 0/1:4,12:16:88:311,0,88 1 49052423 rs11579440 T C 96.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.327;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.05;ReadPosRankSum=-0.114;SB=-3.200e+01;SOR=0.446;VQSLOD=9.56;culprit=QD GT:AD:DP:GQ:PL 0/1:11,5:16:99:125,0,329 1 49052933 rs2803277 T C 906.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.740;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=5.030;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-0.005;SB=-4.110e+02;SOR=0.297;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:42,37:79:99:935,0,1276 1 49056695 rs7543402 T C 594.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.076;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=8.744;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=-0.222;SB=-1.951e+02;SOR=0.045;VQSLOD=7.59;culprit=FS GT:AD:DP:GQ:PL 0/1:13,22:35:99:623,0,422 1 49100332 rs319983 C T 1267.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.222;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=1.507;SB=-2.360e+02;SOR=0.569;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:43,44:87:99:1296,0,1315 1 49113319 rs319953 T C 659.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=1.865;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.15;ReadPosRankSum=-0.005;SB=-4.180e+02;SOR=0.947;VQSLOD=7.11;culprit=QD GT:AD:DP:GQ:PL 0/1:50,31:81:99:688,0,1322 1 49128634 . A G 419.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.858;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.14;ReadPosRankSum=0.156;SB=-4.276e+01;SOR=0.330;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 0/1:11,15:26:99:448,0,363 1 49128720 rs320007 C T 1235.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.419;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.948;HaplotypeScore=2.8474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=0.186;SB=-3.640e+02;SOR=0.906;VQSLOD=7.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,44:82:99:1264,0,1068 1 49193394 rs1385152 G T 788.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.55;SB=-1.911e+02;SOR=2.584;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:817,60,0 1 49224584 rs1128934 G T 2999.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-1.501e+03;SOR=1.132;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:3028,220,0 1 49242610 . C G 118.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.545;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.0477;MLEAC=1;MLEAF=0.500;MQ=57.69;MQ0=0;MQRankSum=-1.631;QD=6.60;ReadPosRankSum=0.089;SB=0.00;SOR=0.693;VQSLOD=2.11;culprit=QD GT:AD:DP:GQ:PL 0/1:9,9:18:99:147,0,102 1 49332724 rs6703833 A C 304.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.10;ReadPosRankSum=1.146;SB=-1.590e+02;SOR=0.628;VQSLOD=8.33;culprit=QD GT:AD:DP:GQ:PL 0/1:36,14:50:99:333,0,987 1 49332969 rs61785986 A G 166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.296;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.34;ReadPosRankSum=0.875;SB=-2.501e+01;SOR=0.963;VQSLOD=9.11;culprit=QD GT:AD:DP:GQ:PL 0/1:13,7:20:99:195,0,371 1 49511424 rs3934240 A G 1132.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.125;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=4.438;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=1.035;SB=-2.930e+02;SOR=1.259;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 0/1:50,42:92:99:1161,0,1348 1 49711281 rs7528510 C T 856.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.363;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=3.718;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=0.390;SB=-1.390e+02;SOR=0.256;VQSLOD=9.76;culprit=SOR GT:AD:DP:GQ:PL 0/1:31,30:61:99:885,0,1014 1 50310802 rs7533801 T C 831.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-3.240e+02;SOR=1.781;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:63:860,63,0 1 50311454 rs4926833 G A 283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.971;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.682;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=-0.463;SB=-1.930e+02;SOR=0.223;VQSLOD=9.73;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,12:25:99:312,0,407 1 50312200 rs4582848 A C 179.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=1.248;SB=0.00;SOR=0.859;VQSLOD=10.17;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:208,0,167 1 50331725 rs10788920 T C 259.80 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.98;SB=-1.633e+02;SOR=1.085;VQSLOD=4.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:21:288,21,0 1 50572096 rs12138061 C A 1136.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.522;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=2.988;HaplotypeScore=2.5776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=-0.398;SB=-7.380e+02;SOR=0.395;VQSLOD=9.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,44:81:99:1165,0,1079 1 50661411 rs2480683 C T 2868.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-1.591e+03;SOR=1.122;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:2897,220,0 1 50661688 rs2480682 T C 380.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=0.00;SOR=4.804;VQSLOD=8.39;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,10:10:30:409,30,0 1 50666515 rs2494876 C T 4332.77 PASS AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;SB=-2.011e+03;SOR=1.390;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,143:143:99:4361,319,0 1 50956131 rs12098011 G A 310.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=0.00;SOR=4.804;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:339,27,0 1 50956163 rs143167159 AAAGG A 722.73 PASS AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.70;RPA=7,6;RU=AAGG;SB=0.00;SOR=5.283;STR;VQSLOD=7.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:14:39:760,39,0 1 50956212 rs67057333 C CAAATACAGTGG 3486.73 PASS AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.17;SB=-5.483e+02;SOR=3.098;VQSLOD=3.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:78:3524,78,0 1 50957509 rs1149790 A T 852.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.46;SB=-1.931e+02;SOR=2.468;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:69:881,69,0 1 51078089 rs17387761 G A 1550.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.20;SB=-9.350e+02;SOR=0.970;VQSLOD=5.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1579,117,0 1 51121039 rs11585301 T C 649.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.140;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=2.350;SB=-2.110e+02;SOR=0.727;VQSLOD=9.14;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:27,24:51:99:678,0,646 1 51753812 rs635590 G A 863.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.897;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=-1.329;SB=-2.180e+02;SOR=0.805;VQSLOD=7.84;culprit=FS GT:AD:DP:GQ:PL 0/1:49,32:81:99:892,0,1274 1 51777703 rs375056051 G A 177.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.16;ReadPosRankSum=0.000;SB=0.00;SOR=0.859;VQSLOD=8.78;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:206,0,149 1 51787952 rs149296733 C T 63.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.38;ReadPosRankSum=-1.242;SB=0.00;SOR=0.412;VQSLOD=9.11;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:92:92,0,193 1 51808567 rs12072333 C T 491.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.572;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.021;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.21;ReadPosRankSum=-1.281;SB=-1.410e+02;SOR=0.273;VQSLOD=9.25;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,17:27:99:520,0,291 1 51810525 rs114480846 G A 132.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.920;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=0.413;SB=-6.700e+01;SOR=0.204;VQSLOD=9.49;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,6:13:99:161,0,210 1 51826742 rs75735499 G C 786.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.245;HaplotypeScore=3.7075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=-0.270;SB=-2.220e+02;SOR=0.479;VQSLOD=9.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,29:55:99:815,0,738 1 51826921 rs17567 T C 1557.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.922;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=-1.046;SB=-7.720e+02;SOR=0.736;VQSLOD=8.62;culprit=FS GT:AD:DP:GQ:PL 0/1:84,61:145:99:1586,0,2060 1 51868063 . C CT 680.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;DP=36;ExcessHet=3.0103;FS=4.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.45;RPA=8,9;RU=T;ReadPosRankSum=-1.357;SB=-2.491e+02;SOR=0.203;STR;VQSLOD=7.90;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,27:36:99:718,0,120 1 51871438 rs71695267 G GACTC 464.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.43;RPA=1,2;RU=ACTC;ReadPosRankSum=-0.039;SB=0.00;SOR=0.392;STR;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:12,8:20:99:502,0,778 1 51873951 rs1065754 G A 2442.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.43;SB=-8.680e+02;SOR=2.112;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2471,184,0 1 51905949 rs372668692 CTGTG C 1152.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.993;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.31;RPA=18,16;RU=TG;ReadPosRankSum=1.084;SB=-4.160e+02;SOR=0.533;STR;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:29,24:64:99:1190,0,1329 1 51912760 rs34704431 T G 556.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.489;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=-0.070;SB=-2.560e+02;SOR=0.775;VQSLOD=8.42;culprit=FS GT:AD:DP:GQ:PL 0/1:32,26:58:99:585,0,869 1 51929504 rs5774101 TA T 779.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;DB;DP=35;ExcessHet=3.0103;FS=2.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.93;RPA=2,1;RU=A;ReadPosRankSum=0.195;SB=-3.400e+01;SOR=2.066;STR;VQSLOD=5.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,21:35:99:817,0,473 1 52215419 rs79304353 G T 594.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=4.492;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=0.748;SB=-1.360e+02;SOR=0.164;VQSLOD=9.70;culprit=SOR GT:AD:DP:GQ:PL 0/1:18,22:40:99:623,0,597 1 52264064 rs1770791 A G 628.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=0.733;SB=-3.900e+02;SOR=0.776;VQSLOD=9.76;culprit=FS GT:AD:DP:GQ:PL 0/1:28,27:55:99:657,0,673 1 52264191 rs114336613 G C 135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.70;ReadPosRankSum=-0.125;SB=-4.276e+01;SOR=0.105;VQSLOD=9.36;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,6:14:99:164,0,282 1 52266120 rs2842581 C T 488.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.855;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=3.372;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=-0.747;SB=-1.680e+02;SOR=0.243;VQSLOD=9.91;culprit=SOR GT:AD:DP:GQ:PL 0/1:30,21:51:99:517,0,921 1 52272705 rs141926217 T C 136.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-1.072;SB=0.00;SOR=0.859;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:165,0,167 1 52279650 rs2982846 T G 1663.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.73;SB=-1.141e+03;SOR=0.831;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1692,123,0 1 52287107 rs114412842 T C 394.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.327;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.114;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=0.029;SB=-1.060e+02;SOR=0.307;VQSLOD=9.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,14:24:99:423,0,306 1 52290868 rs146486390 T C 259.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=-0.295;SB=-3.876e+01;SOR=0.593;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:4,9:13:99:288,0,126 1 52293570 rs2077725 G A 625.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=3.687;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=1.159;SB=-3.650e+02;SOR=0.352;VQSLOD=9.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,27:60:99:654,0,892 1 52293638 rs706495 G A 800.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.82;SB=-7.897e+01;SOR=4.003;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:63:829,63,0 1 52306196 . G GA 269.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.79;RPA=10,11;RU=A;ReadPosRankSum=0.544;SB=-1.150e+02;SOR=0.818;STR;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 0/1:12,13:26:99:307,0,242 1 52344245 rs72901974 T G 601.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.026;HaplotypeScore=2.6000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=0.066;SB=-2.220e+02;SOR=0.873;VQSLOD=7.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,24:61:99:630,0,985 1 52398830 rs113604180 C A 580.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=1.227;SB=-3.000e+01;SOR=1.179;VQSLOD=9.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,20:41:99:609,0,654 1 52402833 rs116723557 C T 551.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.723;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.496;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=0.052;SB=-1.760e+02;SOR=0.465;VQSLOD=8.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,19:34:99:580,0,471 1 52402856 rs10888741 T G 1536.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.81;SB=-3.700e+02;SOR=2.584;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1565,117,0 1 52402956 rs10888742 G A 3934.77 PASS AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-1.680e+03;SOR=1.628;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,128:128:99:3963,292,0 1 52489322 rs2783178 G A 2168.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.37;SB=-5.830e+02;SOR=2.483;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2197,163,0 1 52490418 rs4926906 C T 343.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.561;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=1.628;SB=-9.800e+01;SOR=1.071;VQSLOD=7.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,14:31:99:372,0,463 1 52498370 rs2809917 C T 837.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.098;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.422;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=0.261;SB=-1.240e+02;SOR=1.102;VQSLOD=7.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,29:55:99:866,0,736 1 52507070 rs2809958 T A 433.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.581;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.145;SB=-3.301e+01;SOR=0.527;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:18,15:33:99:462,0,562 1 52507161 rs115176881 C T 1039.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.891;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=1.845;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=1.340;SB=-5.130e+02;SOR=0.472;VQSLOD=9.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,43:91:99:1068,0,1369 1 52517412 rs7529324 A G 985.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.466;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.120;HaplotypeScore=5.4004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=0.984;SB=-3.430e+02;SOR=1.213;VQSLOD=7.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,38:74:99:1014,0,1003 1 52698707 rs992678 T C 153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.661;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.54;ReadPosRankSum=-0.141;SB=0.00;SOR=0.255;VQSLOD=10.00;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:182,0,405 1 52729432 rs3833531 C G 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.003;HaplotypeScore=12.0708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=0.164;SB=-7.000e+01;SOR=0.715;VQSLOD=5.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,14:25:99:309,0,172 1 52759048 . C CA 75.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQ0=0;MQRankSum=0.000;QD=3.79;RPA=22,23;RU=A;ReadPosRankSum=0.039;SB=-2.015e+01;SOR=0.368;STR;VQSLOD=7.48;culprit=QD GT:AD:DP:GQ:PL 0/1:12,8:21:99:113,0,132 1 52819888 rs2477101 A G 832.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.70;SB=-1.225e+02;SOR=3.442;VQSLOD=7.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:63:861,63,0 1 52820226 rs2820334 G A 3306.77 PASS AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.42;SB=-1.937e+03;SOR=0.732;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:102:99:3335,250,0 1 52851504 . G A 1272.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.54;ReadPosRankSum=-1.016;SB=-7.870e+02;SOR=0.683;VQSLOD=7.68;culprit=FS GT:AD:DP:GQ:PL 0/1:44,50:95:99:1301,0,1268 1 52912122 . T TA 200.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;DP=21;ExcessHet=3.0103;FS=4.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.56;RPA=11,12;RU=A;ReadPosRankSum=1.364;SB=-9.633e+01;SOR=0.148;STR;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:21:99:238,0,152 1 52991638 rs12123698 C T 620.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.405;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=1.761;SB=-3.440e+02;SOR=0.385;VQSLOD=9.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,23:41:99:649,0,466 1 53072454 rs1970951 T C 4556.77 PASS AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SB=-2.284e+03;SOR=1.105;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,136:136:99:4585,331,0 1 53072741 rs1970950 A G 403.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.79;SB=0.00;SOR=4.977;VQSLOD=7.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:432,33,0 1 53153432 rs443751 T C 2183.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.493;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=5.466;HaplotypeScore=2.6421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=0.539;SB=-1.177e+03;SOR=0.364;VQSLOD=8.52;culprit=FS GT:AD:DP:GQ:PL 0/1:58,82:140:99:2212,0,1533 1 53237526 rs1571979 G A 455.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.443;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.23;ReadPosRankSum=-0.833;SB=-3.200e+01;SOR=1.179;VQSLOD=10.31;culprit=FS GT:AD:DP:GQ:PL 0/1:10,15:25:99:484,0,290 1 53245472 rs9661082 A T 627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.540;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=4.489;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-0.324;SB=-1.050e+02;SOR=1.485;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 0/1:34,24:58:99:656,0,929 1 53250650 rs6588443 G A 1093.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.360;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=1.699;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=1.178;SB=-5.820e+02;SOR=0.954;VQSLOD=7.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,44:93:99:1122,0,1234 1 53271225 rs487453 T C 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.676;SB=-1.070e+02;SOR=0.446;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:201,0,206 1 53320274 rs480299 G T 2378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-11.731;DB;DP=203;Dels=0.00;ExcessHet=3.0103;FS=1.085;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=-0.709;SB=-1.421e+03;SOR=0.610;VQSLOD=7.38;culprit=DP GT:AD:DP:GQ:PL 0/1:104,99:203:99:2407,0,2598 1 53323492 rs10788945 C A 561.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.061;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=-1.822;SB=-7.100e+01;SOR=0.446;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:16,19:35:99:590,0,523 1 53332445 rs564273 G C 166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.254;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=0.154;SB=0.00;SOR=0.495;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:9,7:16:99:195,0,318 1 53351349 rs10581739 ATT A 509.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.32;ReadPosRankSum=-0.227;SB=0.00;SOR=1.179;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:547,0,361 1 53361928 rs1044365 A G 523.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.270;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-0.088;SB=-1.640e+02;SOR=0.484;VQSLOD=10.38;culprit=FS GT:AD:DP:GQ:PL 0/1:23,19:42:99:552,0,633 1 53362818 rs511599 T C 131.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=1.672;SB=0.00;SOR=0.473;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:160,0,277 1 53364976 rs576891 A G 1737.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.366;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.733;SB=-9.380e+02;SOR=0.744;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:62,69:131:99:1766,0,1595 1 53365104 rs2298145 A G 513.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.186;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=0.942;SB=-2.350e+02;SOR=0.859;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:28,20:48:99:542,0,770 1 53365235 rs520281 G C 99.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.67;ReadPosRankSum=0.079;SB=-1.765e+00;SOR=0.804;VQSLOD=9.32;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:99:128,0,297 1 53387215 rs55836843 G A 702.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.159;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.929;HaplotypeScore=2.6665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=0.304;SB=-3.980e+02;SOR=0.554;VQSLOD=8.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,29:68:99:731,0,1032 1 53453640 rs7528565 A G 561.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.298;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=1.291;SB=-9.000e+01;SOR=0.818;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:23,20:43:99:590,0,660 1 53453683 rs7516939 C T 913.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.371;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=2.006;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-0.133;SB=-3.610e+02;SOR=1.071;VQSLOD=7.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,37:77:99:942,0,941 1 53453714 rs7538935 G T 1262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.184;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.815;HaplotypeScore=2.7819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=-1.366;SB=-5.610e+02;SOR=0.904;VQSLOD=7.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,47:91:99:1291,0,1023 1 53453930 rs7528867 A T 470.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.345;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=1.581;SB=0.00;SOR=0.826;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:14,16:30:99:499,0,416 1 53461443 rs17131748 T C 480.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.397;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=-1.882;SB=-2.900e+02;SOR=0.430;VQSLOD=9.00;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:14,18:32:99:509,0,350 1 53513423 rs11206079 C T 133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=0.000;SB=0.00;SOR=0.446;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:162,0,232 1 53513437 rs1288362 T C 282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.761;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.67;ReadPosRankSum=0.103;SB=0.00;SOR=0.941;VQSLOD=10.45;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:311,0,224 1 53513768 rs4599997 C G 529.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.455;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.203;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=1.350;SB=-1.660e+02;SOR=0.978;VQSLOD=6.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,21:51:99:558,0,800 1 53513837 rs4348672 G C 251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.835;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=-1.459;SB=0.00;SOR=0.693;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:280,0,276 1 53527948 rs7513730 T G 119.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.468;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.185;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.30;ReadPosRankSum=-0.044;SB=-2.203e+01;SOR=1.609;VQSLOD=5.02;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:148,0,324 1 53527996 rs56054926 A G 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.49;ReadPosRankSum=0.281;SB=-5.000e+01;SOR=0.619;VQSLOD=9.39;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:163,0,286 1 53532609 rs11580093 T C 532.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.652;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=1.209;SB=-1.780e+02;SOR=0.602;VQSLOD=10.01;culprit=FS GT:AD:DP:GQ:PL 0/1:13,19:32:99:561,0,338 1 53535478 rs1288386 G A 500.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.356;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-0.717;SB=-2.610e+02;SOR=0.627;VQSLOD=10.08;culprit=FS GT:AD:DP:GQ:PL 0/1:22,21:43:99:529,0,580 1 53535499 rs17107831 C T 602.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.911;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-0.537;SB=-2.860e+02;SOR=0.826;VQSLOD=10.03;culprit=FS GT:AD:DP:GQ:PL 0/1:23,25:48:99:631,0,579 1 53537266 rs1769316 G A 1345.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.339;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=5.170;HaplotypeScore=3.1574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=-1.432;SB=-6.220e+02;SOR=1.208;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 0/1:41,56:97:99:1374,0,938 1 53543112 rs946590 C G 2334.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.45;SB=-4.176e+01;SOR=6.837;VQSLOD=3.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:2363,178,0 1 53543312 rs12745973 C T 811.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.507;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.45;ReadPosRankSum=0.506;SB=-1.000e+02;SOR=0.864;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:17,27:44:99:840,0,481 1 53544439 rs1288388 G A 1391.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.644;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-0.691;SB=-7.210e+02;SOR=0.822;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 0/1:53,57:110:99:1420,0,1539 1 53544578 rs11206088 T C 776.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.924;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.694;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=-0.151;SB=-2.300e+02;SOR=1.247;VQSLOD=7.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,27:49:99:805,0,646 1 53544597 rs1288389 T C 1261.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=-4.940e+02;SOR=1.788;VQSLOD=4.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1290,99,0 1 53553702 rs1288400 A G 1388.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=-5.660e+02;SOR=1.556;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1417,111,0 1 53553754 rs1288401 T C 572.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.787;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.55;ReadPosRankSum=-0.317;SB=-3.150e+02;SOR=0.638;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 0/1:36,24:60:99:601,0,987 1 53554533 . A AT 335.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;DP=25;ExcessHet=3.0103;FS=1.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;RPA=1,2;RU=T;ReadPosRankSum=0.444;SB=-1.180e+02;SOR=0.321;STR;VQSLOD=9.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,10:25:99:373,0,599 1 53555783 rs1288403 A C 559.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=-1.603e+02;SOR=2.303;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:42:588,42,0 1 53558270 rs1288406 A G 1097.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=1.871;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=1.058;SB=-4.840e+02;SOR=0.473;VQSLOD=9.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,41:90:99:1126,0,1415 1 53558583 rs67139105 C CTG 848.73 PASS AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=37.23;RPA=1,2;RU=TG;SB=0.00;SOR=5.784;STR;VQSLOD=8.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:886,51,0 1 53559310 rs11206091 T C 474.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.937;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=-0.040;SB=-1.765e+00;SOR=1.708;VQSLOD=8.03;culprit=FS GT:AD:DP:GQ:PL 0/1:25,16:41:99:503,0,757 1 53571288 rs1288422 C G 520.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-7.597e+01;SOR=3.258;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:549,42,0 1 53574123 rs1769289 C T 790.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SB=-3.077e+01;SOR=4.892;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:63:819,63,0 1 53608133 rs3737990 C A 648.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.516;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=4.325;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=1.976;SB=-4.130e+02;SOR=0.293;VQSLOD=8.89;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:17,26:43:99:677,0,443 1 53662823 rs72673121 C A 572.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.193;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.579;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=-0.152;SB=-1.890e+02;SOR=1.168;VQSLOD=7.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,23:51:99:601,0,706 1 53676448 rs1799821 G A 1192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=2.443;HaplotypeScore=2.6205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=0.490;SB=-6.480e+02;SOR=0.576;VQSLOD=9.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,47:111:99:1221,0,1824 1 53679229 rs1799822 A G 1663.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.601;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.722;HaplotypeScore=4.0762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=0.087;SB=-5.370e+02;SOR=0.929;VQSLOD=7.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,63:130:99:1692,0,1827 1 53681699 rs1134688 T G 1156.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.757;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=1.663;SB=-6.630e+02;SOR=0.600;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:37,48:85:99:1185,0,909 1 53684525 rs436887 C G 1972.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.7812;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.01;SB=-7.430e+02;SOR=1.352;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2001,147,0 1 53712727 rs5174 C T 638.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.453;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=-0.043;SB=-2.860e+02;SOR=0.760;VQSLOD=8.75;culprit=FS GT:AD:DP:GQ:PL 0/1:38,24:62:99:667,0,976 1 53716416 rs3737983 G A 1168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.906;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-0.183;SB=-5.800e+02;SOR=0.682;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:56,49:105:99:1197,0,1368 1 53723190 rs869987 G T 1560.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.763;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=5.825;HaplotypeScore=3.4321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.417;SB=-5.340e+02;SOR=1.219;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 0/1:63,61:124:99:1589,0,1506 1 53732315 rs2297660 G T 1087.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.858;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-0.241;SB=-1.270e+02;SOR=0.767;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:42,37:79:99:1116,0,1314 1 53736613 rs7542607 A G 331.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.737;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=1.307;SB=0.00;SOR=0.622;VQSLOD=10.15;culprit=FS GT:AD:DP:GQ:PL 0/1:13,12:25:99:360,0,433 1 53738183 rs7546246 A G 534.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.873;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=-0.352;SB=-2.670e+02;SOR=0.646;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 0/1:31,22:53:99:563,0,748 1 53742506 rs56300220 A G 58.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.34;ReadPosRankSum=0.886;SB=-2.601e+01;SOR=1.179;VQSLOD=8.33;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:87:87,0,262 1 53746134 rs1288518 G A 427.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.578;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.11;ReadPosRankSum=0.091;SB=-2.120e+02;SOR=0.622;VQSLOD=10.32;culprit=FS GT:AD:DP:GQ:PL 0/1:7,18:25:99:456,0,149 1 53746595 rs2297657 A T 204.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=-0.890;SB=-9.900e+01;SOR=0.399;VQSLOD=10.12;culprit=FS GT:AD:DP:GQ:PL 0/1:12,9:21:99:233,0,351 1 53755151 rs12035577 T C 1011.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.561;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=1.335;SB=-4.130e+02;SOR=0.735;VQSLOD=8.80;culprit=FS GT:AD:DP:GQ:PL 0/1:35,36:71:99:1040,0,914 1 53792456 rs12718422 G C 733.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.070;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=0.961;SB=-6.200e+01;SOR=0.914;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:19,23:42:99:762,0,511 1 53792651 rs3820198 A C 2283.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.91;SB=-1.137e+03;SOR=1.439;VQSLOD=5.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2312,163,0 1 53793452 rs113759488 T C 155.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.807;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-0.386;SB=-1.300e+02;SOR=0.593;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:184,0,139 1 53793511 rs4926972 T C 288.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=-1.603e+02;SOR=1.085;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:317,24,0 1 53974987 rs10749691 G T 2331.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-9.200e+02;SOR=1.675;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2360,178,0 1 53990321 rs541224 C T 127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.323;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=1.679;SB=0.00;SOR=0.368;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:8,5:13:99:156,0,276 1 53990715 rs492600 T C 206.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-0.718;SB=0.00;SOR=0.693;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:235,0,261 1 54252939 rs370214243 GA G 70.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;DB;DP=37;ExcessHet=3.0103;FS=2.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.36;RPA=12,11;RU=A;ReadPosRankSum=-0.939;SB=-3.900e+01;SOR=0.197;STR;VQSLOD=5.60;culprit=QD GT:AD:DP:GQ:PL 0/1:22,8:37:99:108,0,495 1 54258880 rs2273139 C T 300.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.580;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-0.658;SB=-1.980e+02;SOR=0.870;VQSLOD=7.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,14:25:99:329,0,275 1 54284814 rs12089209 C T 386.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.277;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.524;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=0.372;SB=-8.800e+01;SOR=1.148;VQSLOD=7.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,13:34:99:415,0,525 1 54298297 rs72662336 T C 317.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.436;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.333;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.39;ReadPosRankSum=-0.087;SB=-2.080e+02;SOR=0.385;VQSLOD=8.91;culprit=QD GT:AD:DP:GQ:PL 0/1:26,17:43:99:346,0,678 1 54325688 rs11206230 T C 815.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.405;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.240;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=-0.580;SB=-3.340e+02;SOR=0.438;VQSLOD=10.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,29:50:99:844,0,641 1 54331763 rs1883453 A G 302.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.385;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.000;SB=0.00;SOR=0.693;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:11,11:22:99:331,0,365 1 54344282 rs2272928 C A 2155.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-7.890e+02;SOR=1.785;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2184,163,0 1 54348716 rs3737835 T C 265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.752;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=-1.658;SB=-4.276e+01;SOR=0.527;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:5,10:15:99:294,0,149 1 54354658 rs2294508 T G 1652.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-5.100e+02;SOR=2.259;VQSLOD=7.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1681,126,0 1 54356002 rs6702862 G T 958.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.24;SB=-1.035e+02;SOR=3.767;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:75:987,75,0 1 54356106 rs6656722 G A 2403.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-1.040e+03;SOR=1.439;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2432,178,0 1 54356341 rs6682112 C G 761.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.63;SB=-1.245e+02;SOR=3.258;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:790,60,0 1 54356347 rs6694562 A T 577.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-1.135e+02;SOR=2.833;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:606,45,0 1 54356361 rs11206237 C A 240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.096;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=0.123;SB=-3.577e+01;SOR=0.527;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:5,10:15:99:269,0,160 1 54359922 rs2294510 C T 1426.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.808;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.692;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.117;SB=-6.500e+02;SOR=0.598;VQSLOD=9.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:73,57:130:99:1455,0,2091 1 54370235 . A AG 893.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.92;RPA=5,6;RU=G;ReadPosRankSum=0.859;SB=-2.410e+02;SOR=0.519;STR;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:11,28:39:99:931,0,284 1 54370264 rs2294511 A T 907.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.134;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=1.890;SB=-2.580e+02;SOR=0.580;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:20,35:55:99:936,0,490 1 54370306 rs2294512 G A 2227.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.31;SB=-1.168e+03;SOR=1.270;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2256,166,0 1 54441756 rs10888828 A G 225.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.142;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.740;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=-0.215;SB=-1.180e+02;SOR=1.139;VQSLOD=7.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,11:23:99:254,0,290 1 54474472 rs6672989 T C 248.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=-0.057;SB=0.00;SOR=0.818;VQSLOD=10.47;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:277,0,228 1 54474738 rs141759859 C T 1342.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.072;SB=-6.850e+02;SOR=0.629;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 0/1:59,54:113:99:1371,0,1411 1 54476147 rs17109656 G A 518.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.079;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-1.669;SB=-1.970e+02;SOR=0.938;VQSLOD=10.01;culprit=FS GT:AD:DP:GQ:PL 0/1:15,21:36:99:547,0,386 1 54477726 rs55766128 T G 657.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=0.00;SOR=5.994;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:686,57,0 1 54483636 rs74085128 C T 123.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=-0.233;SB=0.00;SOR=0.446;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:152,0,250 1 54483641 rs74085130 C G 140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=0.422;SB=-1.765e+00;SOR=1.179;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:8,5:13:99:169,0,255 1 54483694 rs34764952 C T 536.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.033;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=0.749;SB=-1.850e+02;SOR=0.748;VQSLOD=8.84;culprit=FS GT:AD:DP:GQ:PL 0/1:17,21:38:99:565,0,520 1 54502264 . T TGGTCTAAG 1322.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.883;DP=38;ExcessHet=3.0103;FS=1.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.05;ReadPosRankSum=0.061;SB=-1.820e+02;SOR=1.267;VQSLOD=6.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,14:38:99:1360,0,2516 1 54502268 rs112866300 A T 361.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.631;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=7.864;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.22;ReadPosRankSum=0.892;SB=-3.600e+01;SOR=2.271;VQSLOD=5.42;culprit=QD GT:AD:DP:GQ:PL 0/1:29,15:44:99:390,0,678 1 54511200 rs41538044 A G 463.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.810;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.291;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=0.036;SB=-3.177e+01;SOR=0.074;VQSLOD=8.88;culprit=SOR GT:AD:DP:GQ:PL 0/1:17,16:33:99:492,0,567 1 54511499 rs137869393 G A 1004.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.146;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=3.638;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.812;SB=-2.200e+02;SOR=1.179;VQSLOD=7.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,35:74:99:1033,0,1054 1 54519800 rs74085143 G A 254.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.485;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=-1.356;SB=-1.765e+00;SOR=1.659;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 0/1:17,10:28:99:283,0,538 1 54561916 rs7555099 C T 2279.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.53;SB=-4.190e+02;SOR=3.193;VQSLOD=4.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2308,175,0 1 54605318 rs36013100 T TGG 727.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;DB;DP=46;ExcessHet=3.0103;FS=13.154;MLEAC=1;MLEAF=0.500;MQ=60.47;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.66;RPA=8,10;RU=G;ReadPosRankSum=1.448;SB=-1.360e+02;SOR=2.517;STR;VQSLOD=5.04;culprit=FS GT:AD:DP:GQ:PL 0/1:19,20:46:99:765,0,377 1 54605319 rs66812916 G GC 817.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.630;DB;DP=56;ExcessHet=3.0103;FS=3.899;MLEAC=1;MLEAF=0.500;MQ=60.39;MQ0=0;MQRankSum=1.749;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=0.857;SB=-4.070e+02;SOR=0.635;VQSLOD=0.243;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,22:56:99:855,0,660 1 54606804 rs3766465 C T 4612.77 PASS AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-2.073e+03;SOR=1.473;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,151:151:99:4641,337,0 1 54607051 rs671103 A G 5559.77 PASS AC=2;AF=1.00;AN=2;DB;DP=177;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-2.627e+03;SOR=1.334;VQSLOD=6.50;culprit=DP GT:AD:DP:GQ:PL 1/1:0,177:177:99:5588,406,0 1 54607157 rs671539 G A 2191.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=-6.500e+02;SOR=2.105;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2220,169,0 1 54607283 rs672067 T C 423.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.96;SB=0.00;SOR=4.977;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:452,33,0 1 54618435 rs7528345 A T 793.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.634;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.584;SB=-2.900e+02;SOR=0.833;VQSLOD=9.95;culprit=FS GT:AD:DP:GQ:PL 0/1:30,27:57:99:822,0,791 1 54636689 rs7552121 A G 1066.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.508;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=1.942;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=-1.216;SB=-4.730e+02;SOR=1.027;VQSLOD=7.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,39:78:99:1095,0,866 1 54678305 rs2275408 C G 1716.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.078;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=1.277;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-0.024;SB=-1.094e+03;SOR=0.611;VQSLOD=7.95;culprit=DP GT:AD:DP:GQ:PL 0/1:81,71:152:99:1745,0,2168 1 54681920 rs13571 G C 1681.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.521;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=3.182;HaplotypeScore=2.6594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=0.494;SB=-9.800e+02;SOR=0.458;VQSLOD=8.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:69,63:132:99:1710,0,1709 1 54683856 rs15921 C G 654.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=3.008;HaplotypeScore=4.5004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.28;ReadPosRankSum=0.514;SB=-3.920e+02;SOR=0.980;VQSLOD=5.94;culprit=QD GT:AD:DP:GQ:PL 0/1:59,31:91:99:683,0,1653 1 54683925 rs6621 G A 511.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.572;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.125;HaplotypeScore=2.8297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=-0.231;SB=-1.890e+02;SOR=0.885;VQSLOD=6.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,21:54:99:540,0,874 1 54686374 rs612711 T C 1134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=1.552;HaplotypeScore=2.9463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=-0.047;SB=-6.330e+02;SOR=0.861;VQSLOD=7.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,46:107:99:1163,0,1638 1 54686464 rs613158 C T 802.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=3.078;HaplotypeScore=2.8069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.12;ReadPosRankSum=1.474;SB=-2.720e+02;SOR=1.151;VQSLOD=6.43;culprit=QD GT:AD:DP:GQ:PL 0/1:54,34:88:99:831,0,1472 1 54706733 rs2297027 A G 1509.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.367;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.668;HaplotypeScore=4.7251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=0.749;SB=-6.870e+02;SOR=0.791;VQSLOD=8.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,62:128:99:1538,0,1629 1 55014095 rs3753009 C T 451.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.396;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=2.589;SB=-2.070e+02;SOR=0.741;VQSLOD=9.45;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:13,16:29:99:480,0,312 1 55014099 rs299874 C T 906.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-4.320e+02;SOR=1.255;VQSLOD=5.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:69:935,69,0 1 55014160 rs299872 C T 305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.833;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-2.053;SB=-2.150e+02;SOR=0.346;VQSLOD=9.72;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,14:21:99:334,0,218 1 55051663 rs1172795 G A 399.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.142;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=8.684;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=2.022;SB=-2.530e+02;SOR=0.100;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 0/1:16,19:35:99:428,0,517 1 55060224 rs1755591 G A 1746.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.976;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=2.124;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=0.306;SB=-7.170e+02;SOR=0.885;VQSLOD=7.12;culprit=DP GT:AD:DP:GQ:PL 0/1:86,69:155:99:1775,0,2277 1 55060362 rs1702003 G A 1752.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.353;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=2.328;HaplotypeScore=2.9460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-0.164;SB=-7.520e+02;SOR=0.511;VQSLOD=8.88;culprit=DP GT:AD:DP:GQ:PL 0/1:68,71:139:99:1781,0,1885 1 55062960 rs2304305 G A 624.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.762;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.225;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=-0.678;SB=-2.700e+02;SOR=0.989;VQSLOD=7.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,26:45:99:653,0,486 1 55074922 rs2289016 G A 310.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.441;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=2.091;SB=-1.260e+02;SOR=0.555;VQSLOD=9.09;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:18,11:29:99:339,0,568 1 55075993 rs3820113 G A 519.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.060;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.377;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=-0.123;SB=-2.560e+02;SOR=1.127;VQSLOD=7.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,20:34:99:548,0,340 1 55076113 rs4926650 G A 738.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;DB;DP=59;Dels=0.02;ExcessHet=3.0103;FS=1.007;HaplotypeScore=2.8473;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=0;MQRankSum=-0.948;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=-0.271;SB=-4.670e+02;SOR=0.644;VQSLOD=0.124;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,29:58:99:767,0,695 1 55080612 rs147772009 GGTGT G 3776.73 PASS AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.96;RPA=7,5;RU=GT;SB=-1.367e+03;SOR=1.146;STR;VQSLOD=5.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:72:99:3814,198,0 1 55080629 . A G 1967.77 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.26;SB=-6.530e+02;SOR=1.727;VQSLOD=4.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:62:99:1996,147,0 1 55080745 rs71712879 TAG T 494.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.98;RPA=2,1;RU=AG;ReadPosRankSum=1.372;SB=-1.070e+02;SOR=0.368;STR;VQSLOD=5.35;culprit=FS GT:AD:DP:GQ:PL 0/1:4,11:18:99:532,0,143 1 55085499 rs11206396 T C 229.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=0.245;SB=-1.255e+02;SOR=0.105;VQSLOD=9.68;culprit=SOR GT:AD:DP:GQ:PL 0/1:5,10:15:99:258,0,165 1 55118566 rs1655520 C G 2719.77 PASS AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.24;SB=-1.552e+03;SOR=1.061;VQSLOD=6.89;culprit=DP GT:AD:DP:GQ:PL 1/1:0,93:93:99:2748,199,0 1 55119144 rs11206407 A G 3604.77 PASS AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-2.083e+03;SOR=0.710;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,117:117:99:3633,274,0 1 55119289 rs9332417 G C 3915.77 PASS AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=-2.490e+03;SOR=0.774;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,127:127:99:3944,283,0 1 55119546 rs1655518 A G 6239.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.904;DB;DP=205;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.44;ReadPosRankSum=1.521;SB=-3.823e+03;SOR=0.265;VQSLOD=0.430;culprit=DP GT:AD:DP:GQ:PL 1/1:1,204:205:99:6268,427,0 1 55129372 . A C 108.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=21.2905;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=0.764;QD=5.44;ReadPosRankSum=1.240;SB=-3.200e+01;SOR=0.392;VQSLOD=1.77;culprit=QD GT:AD:DP:GQ:PL 0/1:14,6:20:99:137,0,426 1 55129374 rs138066572 AC A 555.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.151;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.000;QD=26.46;ReadPosRankSum=1.571;SB=-1.113e+02;SOR=1.358;VQSLOD=7.65;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,20:21:58:593,58,0 1 55129564 rs1529783 T C 981.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.85;SB=-1.941e+02;SOR=2.910;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:1010,72,0 1 55130598 rs11206410 T G 735.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=0.00;SOR=5.994;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:764,57,0 1 55130931 rs2078273 C T 2158.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.29;SB=-5.030e+02;SOR=2.867;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2187,166,0 1 55130946 rs6703113 G C 1772.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=-3.570e+02;SOR=3.139;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1801,135,0 1 55130972 rs471724 C T 995.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=-8.197e+01;SOR=4.479;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:81:1024,81,0 1 55134379 rs627095 C T 1311.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-1.921e+02;SOR=3.417;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1340,105,0 1 55136067 rs2251719 T G 448.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;SB=-8.297e+01;SOR=2.833;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:477,36,0 1 55139741 rs570218 A G 2292.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-1.264e+03;SOR=1.150;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2321,175,0 1 55139912 rs12122650 T G 2240.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=-1.116e+03;SOR=1.308;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2269,163,0 1 55158208 rs2304313 C T 1648.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.3032;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-6.650e+02;SOR=1.524;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:54:99:1677,129,0 1 55158224 rs2304312 T C 1203.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.4433;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-4.390e+02;SOR=1.802;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:39:90:1232,90,0 1 55161043 rs75529143 C T 3698.77 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3716;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=-1.162e+03;SOR=2.142;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,114:114:99:3727,271,0 1 55167773 rs646356 T A 2825.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SB=-1.639e+03;SOR=0.786;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2854,217,0 1 55167924 rs3816070 T C 1073.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.56;SB=-1.245e+02;SOR=4.047;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:90:1102,90,0 1 55168298 rs3765018 G A 2320.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.01;SB=-1.407e+03;SOR=0.850;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2349,172,0 1 55168394 rs3765017 A G 1780.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=-9.070e+02;SOR=1.057;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1809,132,0 1 55182300 rs1147990 T A 1768.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.03;SB=-7.160e+02;SOR=1.453;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1797,135,0 1 55183514 rs148958525 A G 373.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=0.00;SOR=4.804;VQSLOD=7.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:402,30,0 1 55197149 rs3815226 T C 4445.77 PASS AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=-2.610e+03;SOR=0.892;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,141:141:99:4474,325,0 1 55247518 rs3815225 C A 303.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-7.997e+01;SOR=2.303;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:332,24,0 1 55250684 rs2286202 A G 942.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.34;SB=-1.185e+02;SOR=3.611;VQSLOD=5.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:27:72:971,72,0 1 55251689 rs586462 T C 3637.77 PASS AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=-1.665e+03;SOR=1.530;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,117:117:99:3666,262,0 1 55253346 rs2269999 G A 236.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.109;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.871;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=0.741;SB=-9.400e+01;SOR=1.802;VQSLOD=5.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,11:21:99:265,0,284 1 55253575 rs665118 T C 1319.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-7.260e+02;SOR=0.836;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1348,102,0 1 55253594 rs2269998 G A 515.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.649;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.864;SB=-2.760e+02;SOR=0.693;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:24,18:42:99:544,0,589 1 55277599 rs600499 T C 1966.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6912;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.22;SB=-8.590e+02;SOR=1.573;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:64:99:1995,144,0 1 55279345 rs149536795 CCCGGCCT C 817.74 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.87;RPA=2,1;RU=CCGGCCT;SB=-1.920e+02;SOR=2.093;STR;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,9:10:27:855,27,0 1 55282556 rs733168 A G 1699.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.28;SB=-1.643e+02;SOR=4.317;VQSLOD=4.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1728,126,0 1 55319902 rs718265 A G 1253.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.83;SB=-6.160e+02;SOR=1.061;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:93:1282,93,0 1 55330966 rs611057 T C 953.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-2.061e+02;SOR=2.985;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:75:982,75,0 1 55336950 rs608458 C G 1620.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.57;SB=-4.176e+01;SOR=6.091;VQSLOD=4.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1649,120,0 1 55337315 rs2303534 C G 5648.77 PASS AC=2;AF=1.00;AN=2;DB;DP=195;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.97;SB=-2.342e+03;SOR=1.748;VQSLOD=5.53;culprit=DP GT:AD:DP:GQ:PL 1/1:0,195:195:99:5677,409,0 1 55337380 rs2303535 A G 2667.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=23.75;SB=-1.633e+02;SOR=4.892;VQSLOD=1.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2696,202,0 1 55340956 rs2075389 G C 3434.77 PASS AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9315;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-1.023e+03;SOR=2.501;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,111:111:99:3463,274,0 1 55341393 rs2075391 A T 529.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.33;SB=0.00;SOR=5.421;VQSLOD=8.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:558,42,0 1 55341519 rs2075392 C T 2090.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.04;SB=-9.120e+02;SOR=1.577;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2119,160,0 1 55352309 rs77444406 C T 1084.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=18.0210;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.12;SB=-6.200e+02;SOR=1.151;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:81:1113,81,0 1 55379383 rs74459621 G C 120.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=50.89;MQ0=0;MQRankSum=-3.256;QD=6.71;ReadPosRankSum=0.301;SB=-7.500e+01;SOR=0.693;VQSLOD=1.16;culprit=QD GT:AD:DP:GQ:PL 0/1:9,9:18:99:149,0,224 1 55379392 rs77726500 G T 145.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.322;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=50.31;MQ0=0;MQRankSum=-3.113;QD=8.57;ReadPosRankSum=-0.375;SB=-4.700e+01;SOR=0.446;VQSLOD=1.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,9:17:99:174,0,213 1 55379404 . G A 110.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=51.78;MQ0=0;MQRankSum=-2.308;QD=8.52;ReadPosRankSum=0.554;SB=-1.321e+01;SOR=1.179;VQSLOD=1.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,6:13:99:139,0,181 1 55379419 . G A 113.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.03;MQ0=0;MQRankSum=-2.166;QD=9.48;ReadPosRankSum=0.309;SB=-1.611e+01;SOR=0.693;VQSLOD=1.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,6:12:99:142,0,159 1 55457710 rs2500326 G A 3877.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.909;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.59;ReadPosRankSum=1.543;SB=-1.968e+03;SOR=0.733;VQSLOD=4.63;culprit=FS GT:AD:DP:GQ:PL 1/1:1,118:120:99:3906,286,0 1 55457815 rs2495513 C T 2175.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.01;SB=-1.077e+03;SOR=1.402;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2204,160,0 1 55464743 rs2500340 T C 1244.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.16;SB=-6.897e+01;SOR=4.743;VQSLOD=3.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:93:1273,93,0 1 55464790 rs2500341 C G 1912.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-7.460e+02;SOR=1.802;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1941,138,0 1 55505732 rs2495482 A G 883.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.47;SB=-5.190e+02;SOR=0.906;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:66:912,66,0 1 55516781 rs599037 G T 3733.77 PASS AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.04;SB=-1.226e+03;SOR=1.761;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,113:113:99:3762,283,0 1 55517861 rs613855 C G 1439.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.72;SB=-3.300e+02;SOR=2.885;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1468,108,0 1 55517883 rs624612 C G 1777.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-5.990e+02;SOR=2.107;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1806,129,0 1 55518166 rs625619 G A 1241.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.55;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-5.350e+02;SOR=1.236;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:96:1270,96,0 1 55518190 rs45597632 AC A 1178.73 PASS AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.62;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;RPA=8,7;RU=C;SB=-5.580e+02;SOR=0.869;STR;VQSLOD=5.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:99:1216,105,0 1 55518528 rs494198 C A 368.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SB=-7.097e+01;SOR=2.833;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:397,30,0 1 55523033 rs509504 A G 1053.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.11;SB=-6.590e+02;SOR=0.749;VQSLOD=6.32;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,35:35:78:1082,78,0 1 55524197 rs540796 A G 270.80 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.08;SB=-1.225e+02;SOR=1.609;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:21:299,21,0 1 55524237 rs562556 G A 214.84 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.48;SB=-1.573e+02;SOR=0.693;VQSLOD=3.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:11:18:243,18,0 1 55525400 rs483462 G A 670.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.54;SB=-3.200e+02;SOR=1.127;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:699,54,0 1 55527323 rs630431 G A 2660.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=-1.357e+03;SOR=1.080;VQSLOD=7.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2689,205,0 1 55527479 rs631220 A G 654.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.32;SB=-4.376e+01;SOR=4.407;VQSLOD=7.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:683,51,0 1 55529187 rs505151 G A 1703.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.93;SB=-1.095e+03;SOR=0.865;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1732,123,0 1 55538385 rs654674 T C 1903.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.27;SB=-4.720e+02;SOR=2.683;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1932,144,0 1 55541174 rs487230 A G 1985.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-8.200e+02;SOR=1.647;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2014,144,0 1 55545515 rs550336 C G 602.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.14;SB=-2.061e+02;SOR=2.093;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:45:631,45,0 1 55546895 rs683880 T C 687.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.02;SB=0.00;SOR=5.892;VQSLOD=8.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:716,54,0 1 55557859 rs68186820 A ATT 1259.73 PASS AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.14;SB=-1.835e+02;SOR=3.352;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:1297,69,0 1 55557864 rs3736992 C T 773.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-7.997e+01;SOR=3.912;VQSLOD=4.01;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,22:22:60:802,60,0 1 55560796 rs503495 T C 566.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.50;SB=0.00;SOR=5.549;VQSLOD=7.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:595,45,0 1 55562125 rs580485 G T 429.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-1.075e+02;SOR=2.303;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:33:458,33,0 1 55566411 rs67540253 TTAGTC T 2444.73 PASS AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.59;SB=-3.073e+02;SOR=3.477;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:32:93:2482,93,0 1 55567143 rs1165282 T C 496.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.97;SB=0.00;SOR=5.283;VQSLOD=7.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:525,39,0 1 55567410 rs615652 A G 919.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=-3.890e+02;SOR=1.382;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:69:948,69,0 1 55572867 rs594226 G A 2202.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-7.990e+02;SOR=1.745;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2231,166,0 1 55614036 rs34030121 CAT C 1213.73 PASS AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.59;SB=0.00;SOR=6.439;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:72:1251,72,0 1 55638075 rs1165222 G A 1359.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-4.210e+02;SOR=2.252;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1388,102,0 1 55643837 rs11350615 TA T 1204.73 PASS AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.46;RPA=4,3;RU=A;SB=-6.997e+01;SOR=4.921;STR;VQSLOD=5.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:41:99:1242,108,0 1 56197779 rs111835607 C G 129.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.49;ReadPosRankSum=0.515;SB=-8.500e+01;SOR=0.845;VQSLOD=8.18;culprit=QD GT:AD:DP:GQ:PL 0/1:13,7:20:99:158,0,353 1 56673450 rs778415 A G 90.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.178;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=5.237;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.67;ReadPosRankSum=-0.908;SB=-5.200e+01;SOR=0.681;VQSLOD=5.15;culprit=QD GT:AD:DP:GQ:PL 0/1:11,5:16:99:119,0,344 1 56673585 rs1236961 T C 226.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.723;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=0.394;SB=-1.560e+02;SOR=0.693;VQSLOD=10.13;culprit=FS GT:AD:DP:GQ:PL 0/1:11,11:22:99:255,0,282 1 57111169 rs61772962 C G 99.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.65;ReadPosRankSum=1.718;SB=-6.700e+01;SOR=0.368;VQSLOD=8.74;culprit=QD GT:AD:DP:GQ:PL 0/1:10,5:15:99:128,0,287 1 57158293 rs7419053 G A 304.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.857;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=-0.218;SB=0.00;SOR=0.169;VQSLOD=9.99;culprit=FS GT:AD:DP:GQ:PL 0/1:13,12:26:99:333,0,455 1 57161549 rs35403608 G A 170.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=0.775;SB=0.00;SOR=0.693;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:199,0,180 1 57170229 rs932447 T C 256.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.911;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.140;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-0.488;SB=-8.297e+01;SOR=0.132;VQSLOD=10.08;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,10:17:99:285,0,217 1 57185818 rs857141 A G 946.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.346;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=1.934;SB=-1.720e+02;SOR=0.865;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 0/1:23,31:54:99:975,0,580 1 57219631 . G GA 370.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;DP=32;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;RPA=7,8;RU=A;ReadPosRankSum=0.302;SB=-2.203e+01;SOR=1.751;STR;VQSLOD=5.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,16:32:99:408,0,260 1 57221553 . G T 552.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.681;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.030;HaplotypeScore=2.7985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.87;ReadPosRankSum=2.563;SB=-2.730e+02;SOR=0.904;VQSLOD=4.90;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:31,25:56:99:581,0,830 1 57221554 . A G 580.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.037;DP=55;Dels=0.02;ExcessHet=3.0103;FS=1.064;HaplotypeScore=2.7985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.75;ReadPosRankSum=2.786;SB=-3.040e+02;SOR=0.936;VQSLOD=4.96;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:30,24:54:99:609,0,808 1 57224460 rs857103 G C 304.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.01;ReadPosRankSum=2.373;SB=-1.710e+02;SOR=0.633;VQSLOD=6.93;culprit=QD GT:AD:DP:GQ:PL 0/1:62,14:76:99:333,0,1650 1 57254697 rs41305876 G A 716.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.921;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.910;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=2.182;SB=-3.310e+02;SOR=0.836;VQSLOD=6.41;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:42,28:70:99:745,0,1011 1 57257817 rs2298130 T C 1948.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.53;SB=-1.039e+03;SOR=1.196;VQSLOD=6.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:1977,141,0 1 57258485 rs1935553 A G 1016.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.794;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.498;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=-2.141;SB=-4.920e+02;SOR=0.293;VQSLOD=9.72;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:37,35:72:99:1045,0,1090 1 57320487 rs114991676 C G 251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.908;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.19;ReadPosRankSum=0.292;SB=-2.004e+01;SOR=1.402;VQSLOD=5.54;culprit=QD GT:AD:DP:GQ:PL 0/1:25,10:35:99:280,0,734 1 57333311 rs116201358 C A 1744.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.918;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.013;SB=-8.120e+02;SOR=0.741;VQSLOD=8.76;culprit=FS GT:AD:DP:GQ:PL 0/1:57,64:121:99:1773,0,1633 1 57340860 rs2269118 G A 200.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=0.000;SB=-4.076e+01;SOR=0.368;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:229,0,169 1 57347244 rs116129675 C G 1309.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.285;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=4.144;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-0.577;SB=-6.050e+02;SOR=0.373;VQSLOD=9.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,48:97:99:1338,0,1442 1 57372591 rs619545 C T 759.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.010;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.595;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=0.000;SB=-3.560e+02;SOR=0.313;VQSLOD=9.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,29:39:99:788,0,223 1 57373500 rs10562652 GAGA G 377.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.755;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.98;RPA=3,2;RU=AGA;ReadPosRankSum=2.097;SB=0.00;SOR=0.976;STR;VQSLOD=8.46;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:6,8:14:99:415,0,308 1 57374000 rs947656 A G 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=1.519;SB=-1.800e+02;SOR=0.793;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:6,15:21:99:375,0,125 1 57378149 rs1620075 G T 1408.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=1.060;SB=-7.440e+02;SOR=0.672;VQSLOD=8.88;culprit=FS GT:AD:DP:GQ:PL 0/1:61,52:113:99:1437,0,1523 1 57378150 rs1620073 C T 1463.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=1.295;SB=-8.190e+02;SOR=0.643;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 0/1:62,52:114:99:1492,0,1554 1 57378198 rs1754533 T C 1406.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.177;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=1.187;SB=-7.770e+02;SOR=0.703;VQSLOD=8.76;culprit=FS GT:AD:DP:GQ:PL 0/1:56,54:111:99:1435,0,1609 1 57378334 rs1754534 T G 329.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.189;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.722;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=-0.199;SB=-9.732e-01;SOR=1.445;VQSLOD=6.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,11:32:99:358,0,659 1 57383315 rs1342440 G C 1053.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.185;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=1.999;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.625;SB=-5.530e+02;SOR=1.040;VQSLOD=7.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,38:70:99:1082,0,920 1 57395251 rs605648 T C 3056.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.39;SB=-2.030e+03;SOR=0.772;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3085,220,0 1 57395321 rs76151167 C T 963.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.879;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.900;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=0.494;SB=-3.250e+02;SOR=0.896;VQSLOD=7.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,38:83:99:992,0,1135 1 57406392 rs6669836 T C 510.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.303;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=-0.875;SB=-2.540e+02;SOR=0.293;VQSLOD=9.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,20:34:99:539,0,439 1 57409327 rs41286846 T C 1355.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.131;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=1.834;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.098;SB=-4.490e+02;SOR=1.017;VQSLOD=7.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,47:94:99:1384,0,1227 1 57422484 rs1013579 C T 4887.77 PASS AC=2;AF=1.00;AN=2;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-2.907e+03;SOR=0.951;VQSLOD=6.50;culprit=DP GT:AD:DP:GQ:PL 1/1:0,163:163:99:4916,355,0 1 57477034 rs697580 G C 158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.36;ReadPosRankSum=-1.275;SB=0.00;SOR=0.223;VQSLOD=9.65;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:187,0,475 1 57480424 rs944923 C G 168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.212;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=0.630;SB=0.00;SOR=0.399;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:9,6:15:99:197,0,317 1 57489137 rs3738558 T C 686.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.294;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.979;HaplotypeScore=3.9947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=-0.311;SB=-3.240e+02;SOR=0.965;VQSLOD=7.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,28:63:99:715,0,945 1 57489529 rs3820579 A C 676.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.202;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.210;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=1.545;SB=-2.070e+02;SOR=1.528;VQSLOD=5.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,24:39:99:705,0,387 1 57528772 rs1261611 A G 768.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-4.376e+01;SOR=4.712;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:797,60,0 1 57535198 rs3738556 C A 517.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.363;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.71;ReadPosRankSum=-0.759;SB=-1.080e+02;SOR=0.631;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:8,17:25:99:546,0,200 1 58939634 rs12407003 G A 4578.77 PASS AC=2;AF=1.00;AN=2;DB;DP=162;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.26;SB=-3.099e+03;SOR=0.796;VQSLOD=5.22;culprit=DP GT:AD:DP:GQ:PL 1/1:0,162:162:99:4607,331,0 1 58996450 . T C 116.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.168;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-0.554;SB=-2.601e+01;SOR=0.752;VQSLOD=7.48;culprit=QD GT:AD:DP:GQ:PL 0/1:21,6:27:99:145,0,568 1 59004979 rs902925 C T 2418.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6812;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.07;SB=-3.850e+02;SOR=3.489;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2447,187,0 1 59096468 rs76409341 C G 155.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.05;MQ0=0;MQRankSum=-3.244;QD=7.79;ReadPosRankSum=1.526;SB=-5.900e+01;SOR=0.986;VQSLOD=1.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,6:20:99:184,0,297 1 59096469 rs80123627 A G 167.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.712;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.05;MQ0=0;MQRankSum=-3.244;QD=8.39;ReadPosRankSum=1.567;SB=-5.700e+01;SOR=0.986;VQSLOD=1.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,6:20:99:196,0,299 1 59096470 rs79285186 C T 158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.337;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.05;MQ0=0;MQRankSum=-3.244;QD=7.94;ReadPosRankSum=1.691;SB=-5.600e+01;SOR=0.986;VQSLOD=0.917;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,6:20:99:187,0,308 1 59096471 rs78596531 C G 169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.659;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.05;MQ0=0;MQRankSum=-3.244;QD=8.49;ReadPosRankSum=1.691;SB=-5.500e+01;SOR=0.986;VQSLOD=1.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,6:20:99:198,0,306 1 59096479 rs76214975 G A 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.343;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.40;MQ0=0;MQRankSum=-3.308;QD=9.25;ReadPosRankSum=0.842;SB=-5.900e+01;SOR=1.300;VQSLOD=0.631;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,8:23:99:241,0,336 1 59096544 rs72922139 A G 246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.828;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=56.74;MQ0=0;MQRankSum=-3.480;QD=8.51;ReadPosRankSum=-0.953;SB=-1.950e+02;SOR=0.593;VQSLOD=1.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,12:29:99:275,0,426 1 59096581 rs72676740 T C 165.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.890;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=57.02;MQ0=0;MQRankSum=-2.938;QD=6.63;ReadPosRankSum=0.389;SB=-1.270e+02;SOR=0.936;VQSLOD=1.89;culprit=QD GT:AD:DP:GQ:PL 0/1:15,10:25:99:194,0,455 1 59096610 rs76970103 T A 229.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.235;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=56.85;MQ0=0;MQRankSum=-2.934;QD=9.57;ReadPosRankSum=0.116;SB=-1.480e+02;SOR=0.591;VQSLOD=1.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,11:24:99:258,0,333 1 59096630 rs75507867 G A 359.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=57.25;MQ0=0;MQRankSum=-2.471;QD=13.32;ReadPosRankSum=0.024;SB=-1.730e+02;SOR=0.582;VQSLOD=2.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,13:27:99:388,0,351 1 59096641 rs74371537 G C 368.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=57.53;MQ0=0;MQRankSum=-2.708;QD=12.29;ReadPosRankSum=0.775;SB=-1.420e+02;SOR=0.722;VQSLOD=2.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,13:30:99:397,0,403 1 59096779 . G GA 1105.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;DP=47;ExcessHet=3.0103;FS=4.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.53;RPA=1,2;RU=A;ReadPosRankSum=2.646;SB=-4.480e+02;SOR=1.124;STR;VQSLOD=3.58;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:19,28:47:99:1143,0,710 1 59125683 rs232777 C T 370.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.66;ReadPosRankSum=-0.934;SB=-1.030e+02;SOR=0.551;VQSLOD=10.18;culprit=FS GT:AD:DP:GQ:PL 0/1:7,14:21:99:399,0,189 1 59125894 rs12092264 A G 181.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.622;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=1.638;SB=-7.301e+01;SOR=0.368;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:210,0,165 1 59125899 rs12082192 G A 145.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.930;SB=-7.897e+01;SOR=0.105;VQSLOD=9.38;culprit=SOR GT:AD:DP:GQ:PL 0/1:4,6:10:99:174,0,129 1 59126676 rs232779 A C 491.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.38;SB=0.00;SOR=5.283;VQSLOD=8.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:520,39,0 1 59127024 rs4912364 T G 745.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.630;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.388;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=1.300;SB=-4.440e+02;SOR=0.350;VQSLOD=10.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,26:52:99:774,0,690 1 59127207 rs232780 T C 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.510;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.93;ReadPosRankSum=-1.107;SB=-3.501e+01;SOR=0.260;VQSLOD=9.90;culprit=QD GT:AD:DP:GQ:PL 0/1:11,6:17:99:163,0,383 1 59131088 rs516956 A G 1272.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.634;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=3.217;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.45;ReadPosRankSum=-0.036;SB=-1.300e+02;SOR=1.424;VQSLOD=5.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,40:69:99:1301,0,766 1 59131089 rs516957 A C 1237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.338;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=3.217;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.94;ReadPosRankSum=-0.061;SB=-1.370e+02;SOR=1.424;VQSLOD=5.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,40:69:99:1266,0,796 1 59131311 rs232790 G T 2821.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.79;SB=-9.790e+02;SOR=2.208;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:2850,217,0 1 59133024 rs232794 T G 238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=-0.153;SB=0.00;SOR=0.693;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:267,0,242 1 59134607 rs66839551 C CAG 6525.73 PASS AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-3.257e+03;SOR=0.747;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,113:113:99:6563,340,0 1 59137783 rs539141 A G 795.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-4.176e+01;SOR=4.712;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:824,60,0 1 59139223 rs2064370 C G 1282.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.83;SB=-6.870e+02;SOR=1.179;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:44:96:1311,96,0 1 59141365 rs17118097 G A 209.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.14;ReadPosRankSum=-2.389;SB=0.00;SOR=0.836;VQSLOD=9.50;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:6,7:13:99:238,0,207 1 59142713 rs579110 T C 3036.77 PASS AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9860;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.36;SB=-1.678e+03;SOR=1.295;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,111:112:99:3065,229,0 1 59147420 rs11207292 G A 417.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.14;SB=-7.997e+01;SOR=2.833;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:446,33,0 1 59147926 rs12139511 T C 2521.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SB=-1.379e+03;SOR=0.948;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2550,187,0 1 59148118 rs17118103 A T 1629.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.055;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.173;SB=-9.390e+02;SOR=0.746;VQSLOD=8.55;culprit=FS GT:AD:DP:GQ:PL 0/1:75,60:135:99:1658,0,2081 1 59150941 rs2206764 G A 1141.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5072;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.54;SB=-5.370e+02;SOR=1.445;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:84:1170,84,0 1 59150997 rs5774421 TA T 303.73 PASS AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.70;RPA=13,12;RU=A;SB=0.00;SOR=5.421;STR;VQSLOD=5.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:23:42:341,42,0 1 59158632 rs12097333 T C 1220.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-3.500e+02;SOR=2.191;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:90:1249,90,0 1 59160724 rs66629118 TA T 194.74 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=19.47;RPA=13,12;RU=A;SB=-5.397e+01;SOR=2.303;STR;VQSLOD=5.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:232,30,0 1 59165838 rs11207297 T G 227.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=-1.517;SB=-7.497e+01;SOR=0.180;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:256,0,126 1 59248813 rs2760499 G C 2991.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.79;SB=-6.450e+02;SOR=2.780;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:3020,220,0 1 59251097 rs2760501 T G 160.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.530;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.7155;MLEAC=1;MLEAF=0.500;MQ=58.86;MQ0=0;MQRankSum=-1.231;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=0.906;SB=0.00;SOR=0.293;VQSLOD=3.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,6:18:99:189,0,328 1 59365079 rs2492323 G T 508.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=-0.309;SB=-2.220e+02;SOR=0.770;VQSLOD=8.93;culprit=FS GT:AD:DP:GQ:PL 0/1:19,20:39:99:537,0,516 1 59465354 rs2764902 G T 104.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.98;ReadPosRankSum=1.217;SB=-6.400e+01;SOR=0.646;VQSLOD=9.57;culprit=QD GT:AD:DP:GQ:PL 0/1:9,6:15:99:133,0,296 1 59465642 rs2716146 G A 756.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.983;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=1.173;SB=-3.800e+02;SOR=0.926;VQSLOD=7.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,28:61:99:785,0,920 1 59465725 rs2716147 G A 891.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.686;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.0641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-2.500;SB=-4.510e+02;SOR=0.623;VQSLOD=8.44;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:40,32:72:99:920,0,1080 1 59465849 rs2716148 G A 838.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=6.830;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.545;SB=-3.170e+02;SOR=1.657;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 0/1:33,33:66:99:867,0,890 1 59465881 rs2716149 C G 708.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=7.728;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.840;SB=-2.290e+02;SOR=1.851;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 0/1:30,27:57:99:737,0,865 1 59465926 rs2764901 A C 575.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.085;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.661;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-1.493;SB=-1.520e+02;SOR=1.519;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 0/1:23,21:44:99:604,0,630 1 59466192 rs2764900 A G 121.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.958;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.87;ReadPosRankSum=0.159;SB=-1.041e+01;SOR=1.179;VQSLOD=5.59;culprit=QD GT:AD:DP:GQ:PL 0/1:19,6:25:99:150,0,490 1 59787350 rs835409 T G 754.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.669;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.116;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.55;ReadPosRankSum=0.247;SB=-5.250e+02;SOR=0.399;VQSLOD=9.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,35:79:99:783,0,1194 1 60223460 rs590704 A G 424.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.006;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.395;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=-0.137;SB=-2.501e+01;SOR=1.688;VQSLOD=6.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,14:25:99:453,0,334 1 60228310 rs10668386 T TTC 6075.73 PASS AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-2.162e+03;SOR=1.445;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,110:111:99:6113,331,0 1 60280749 rs113730234 GT G 1197.73 PASS AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.17;SB=-4.300e+02;SOR=1.445;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:78:1235,78,0 1 60299820 rs618716 C G 2311.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.54;SB=-1.379e+03;SOR=0.995;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2340,175,0 1 60324243 rs79984800 T C 795.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.766;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.193;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=-1.533;SB=-2.020e+02;SOR=1.032;VQSLOD=7.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,28:57:99:824,0,801 1 60324280 rs3754204 G A 610.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.563;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.590;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=-1.735;SB=-1.770e+02;SOR=0.272;VQSLOD=9.58;culprit=SOR GT:AD:DP:GQ:PL 0/1:18,23:41:99:639,0,559 1 60373775 rs1155002 T C 417.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.90;SB=0.00;SOR=4.977;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:446,33,0 1 60466911 rs67112814 ACAG A 1768.73 PASS AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.69;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.34;SB=-6.670e+02;SOR=1.402;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:93:1806,93,0 1 60475930 rs616949 C G 708.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.86;SB=-1.623e+02;SOR=2.419;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:737,54,0 1 60503594 rs72669614 C T 690.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.358;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.067;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-0.721;SB=-3.320e+02;SOR=0.919;VQSLOD=7.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,27:53:99:719,0,679 1 60505578 rs680390 A G 801.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.84;SB=-1.643e+02;SOR=3.098;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:66:830,66,0 1 60505783 rs12737449 G C 1033.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-0.487;SB=-4.600e+02;SOR=0.755;VQSLOD=8.08;culprit=FS GT:AD:DP:GQ:PL 0/1:48,39:87:99:1062,0,1282 1 60506744 rs10493277 G A 902.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.900;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.777;SB=-4.960e+02;SOR=0.861;VQSLOD=7.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,36:71:99:931,0,868 1 61331160 . C CT 193.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;DP=50;ExcessHet=3.0103;FS=3.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.25;RPA=21,22;RU=T;ReadPosRankSum=-2.043;SB=-5.497e+01;SOR=0.152;STR;VQSLOD=5.59;culprit=QD GT:AD:DP:GQ:PL 0/1:13,18:50:99:231,0,116 1 61743160 rs332827 G A 1067.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.215;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=0.246;SB=-6.670e+02;SOR=0.725;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 0/1:42,45:87:99:1096,0,1168 1 61818381 rs11587835 C T 220.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.611;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=1.060;SB=-3.400e+01;SOR=0.283;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:14,8:22:99:249,0,404 1 61869783 rs2236059 G A 1418.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.713;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-1.482;SB=-5.680e+02;SOR=0.696;VQSLOD=8.63;culprit=FS GT:AD:DP:GQ:PL 0/1:48,54:102:99:1447,0,1227 1 61872228 rs72024587 C CT 403.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.058;DB;DP=15;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=65.17;MQ0=0;MQRankSum=2.255;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.92;ReadPosRankSum=-1.033;SB=-2.040e+02;SOR=0.136;VQSLOD=0.317;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,13:15:32:441,0,32 1 61892301 . T TG 2587.73 PASS AC=2;AF=1.00;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.17;RPA=1,2;RU=G;SB=-1.092e+03;SOR=1.085;STR;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:59:99:2625,175,0 1 61921185 . A AT 224 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.28;MQ0=0;MQRankSum=0.944;POSITIVE_TRAIN_SITE;QD=17.23;RPA=13,14;RU=T;ReadPosRankSum=0.695;SB=-7.617e+01;SOR=1.802;STR;VQSLOD=3.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,11:14:12:261,0,12 1 62160542 rs1151765 A G 190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.08;ReadPosRankSum=0.000;SB=0.00;SOR=1.609;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:85:219,0,85 1 62189541 rs17312971 T C 151.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.624;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.12;ReadPosRankSum=-1.021;SB=-3.777e+01;SOR=0.141;VQSLOD=9.94;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,7:15:99:180,0,270 1 62231924 rs34823754 T TTGA 1431.73 PASS AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.03;RPA=1,2;RU=TGA;SB=0.00;SOR=6.439;STR;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:72:1469,72,0 1 62232031 rs1286835 C T 2852.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=60.55;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.11;SB=-1.447e+03;SOR=1.179;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:2881,211,0 1 62253483 rs3762321 G A 1853.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=2.033;HaplotypeScore=2.8936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-0.501;SB=-1.159e+03;SOR=0.872;VQSLOD=7.83;culprit=DP GT:AD:DP:GQ:PL 0/1:77,75:152:99:1882,0,1937 1 62257223 rs3790577 A G 695.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.71;SB=0.00;SOR=5.892;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:724,54,0 1 62261168 rs7516332 A G 4164.77 PASS AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.33;SB=-2.442e+03;SOR=1.052;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,147:147:99:4193,298,0 1 62263307 rs4915777 G A 608.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=0.00;SOR=5.670;VQSLOD=8.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:637,48,0 1 62330080 rs2799627 T G 4430.77 PASS AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.69;SB=-1.786e+03;SOR=1.482;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,126:126:99:4459,325,0 1 62340855 rs12753462 G C 1694.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.59;SB=-2.880e+02;SOR=3.398;VQSLOD=7.28;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,49:49:99:1723,126,0 1 62341157 rs4598521 T C 333.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=0.00;SOR=4.804;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:362,30,0 1 62365217 rs1412622 C T 2058.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9048;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.89;SB=-3.070e+02;SOR=2.683;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:61:99:2087,157,0 1 62365428 . G GA 423.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;DP=38;ExcessHet=3.0103;FS=3.837;MLEAC=1;MLEAF=0.500;MQ=60.28;MQ0=0;MQRankSum=1.156;POSITIVE_TRAIN_SITE;QD=12.84;RPA=2,3;RU=A;ReadPosRankSum=0.163;SB=-5.900e+01;SOR=1.609;STR;VQSLOD=0.260;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,15:38:99:461,0,624 1 62366878 rs2499002 T G 373.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=0.00;SOR=4.804;VQSLOD=8.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:402,30,0 1 62374267 rs2151122 T C 668.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.32;SB=0.00;SOR=5.784;VQSLOD=7.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:697,51,0 1 62380124 rs4915789 A G 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=-0.818;SB=-1.100e+02;SOR=0.346;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:295,0,194 1 62380270 rs1134766 C T 452.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.059;HaplotypeScore=7.0268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.38;ReadPosRankSum=1.619;SB=-2.370e+02;SOR=0.625;VQSLOD=6.38;culprit=QD GT:AD:DP:GQ:PL 0/1:31,23:54:99:481,0,742 1 62380298 rs1056513 G A 1264.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3023;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.91;SB=-6.430e+02;SOR=1.022;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:96:1293,96,0 1 62393394 rs2251182 A G 3513.77 PASS AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.11;SB=-1.805e+03;SOR=1.360;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,125:125:99:3542,265,0 1 62417925 . T TGA 225.87 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=14;ExcessHet=3.0103;FS=9.542;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.10;RPA=13,14;RU=GA;ReadPosRankSum=1.593;SB=-1.907e+00;SOR=4.398;STR;VQSLOD=4.36;culprit=FS GT:AD:DP:GQ:PL 1/1:1,8:14:15:263,15,0 1 62417952 rs2482877 A G 952.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.39;SB=-1.573e+02;SOR=3.098;VQSLOD=5.67;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,26:26:72:981,72,0 1 62483657 rs7528797 C T 1065.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.359;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=-0.694;SB=-5.220e+02;SOR=0.534;VQSLOD=9.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,44:84:99:1094,0,1147 1 62516683 rs2498982 G C 1434.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.192;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=1.591;HaplotypeScore=6.5683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=1.132;SB=-6.890e+02;SOR=0.963;VQSLOD=7.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,55:108:99:1463,0,1192 1 62545085 rs17379217 C T 549.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.045;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.96;ReadPosRankSum=-0.482;SB=-1.000e+02;SOR=0.544;VQSLOD=10.01;culprit=FS GT:AD:DP:GQ:PL 0/1:10,19:29:99:578,0,282 1 62579672 rs1475564 A C 609.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.632;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=0.306;SB=-1.670e+02;SOR=0.593;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:37,22:59:99:638,0,1123 1 62579823 rs1475563 G A 1680.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;DB;DP=164;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=0.739;SB=-1.096e+03;SOR=0.781;VQSLOD=8.11;culprit=DP GT:AD:DP:GQ:PL 0/1:94,69:164:99:1709,0,2559 1 62587014 . T TA 277.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;DP=61;ExcessHet=3.0103;FS=6.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.05;RPA=12,13;RU=A;ReadPosRankSum=-0.144;SB=-1.550e+02;SOR=0.163;STR;VQSLOD=7.73;culprit=QD GT:AD:DP:GQ:PL 0/1:37,18:61:99:315,0,721 1 62593893 rs2481664 T C 731.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=0.00;SOR=6.273;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:63:760,63,0 1 62594593 rs2476194 C T 4079.77 PASS AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=-2.464e+03;SOR=0.846;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,138:138:99:4108,301,0 1 62594677 rs2481665 T C 1421.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.834;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=5.662;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=0.541;SB=-3.980e+02;SOR=1.301;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 0/1:47,51:98:99:1450,0,1189 1 62644118 rs2481703 A G 273.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.160;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=0.036;SB=0.00;SOR=0.465;VQSLOD=10.40;culprit=FS GT:AD:DP:GQ:PL 0/1:12,9:21:99:302,0,401 1 62672546 rs2457829 G A 1393.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-5.010e+02;SOR=1.666;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1422,105,0 1 62673037 rs7542665 T C 1735.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4481;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-1.180e+03;SOR=0.693;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1764,126,0 1 62673225 rs7533274 G A 807.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.31;SB=-2.990e+02;SOR=1.609;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:63:836,63,0 1 62675261 rs2481695 G A 421.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.618;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=-1.844;SB=-1.400e+02;SOR=0.560;VQSLOD=9.11;culprit=FS GT:AD:DP:GQ:PL 0/1:6,16:22:99:450,0,184 1 62675287 rs7539677 G C 187.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.638;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.71;ReadPosRankSum=1.883;SB=-5.200e+01;SOR=1.022;VQSLOD=5.31;culprit=QD GT:AD:DP:GQ:PL 0/1:20,8:28:99:216,0,597 1 62675385 rs7516863 A G 390.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.143;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=4.821;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=2.072;SB=-1.050e+02;SOR=1.534;VQSLOD=5.67;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:26,14:40:99:419,0,799 1 62675619 rs4625314 C T 349.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-0.655;SB=-2.070e+02;SOR=0.804;VQSLOD=10.14;culprit=FS GT:AD:DP:GQ:PL 0/1:14,15:29:99:378,0,460 1 62675709 rs7551777 T C 440.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.773;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=8.852;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=1.246;SB=-2.080e+02;SOR=0.806;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 0/1:11,15:26:99:469,0,293 1 62675892 rs2481694 A G 1008.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.79;SB=-5.590e+02;SOR=0.760;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:75:1037,75,0 1 62676091 rs11207933 C A 626.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.637;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=-0.426;SB=-2.710e+02;SOR=0.594;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:32,25:57:99:655,0,904 1 62676284 rs2886644 C T 483.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.781;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.073;HaplotypeScore=4.1940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=2.135;SB=-1.910e+02;SOR=1.315;VQSLOD=6.49;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:15,18:33:99:512,0,516 1 62677048 rs1056517 G T 680.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.831;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=-0.793;SB=-3.640e+02;SOR=0.366;VQSLOD=10.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,28:44:99:709,0,464 1 62704134 rs41289438 A G 606.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.773;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.92;ReadPosRankSum=-0.780;SB=-1.390e+02;SOR=1.270;VQSLOD=5.54;culprit=QD GT:AD:DP:GQ:PL 0/1:10,19:29:99:635,0,276 1 62712999 rs111297754 TG T 199.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.64;RPA=5,4;RU=G;ReadPosRankSum=0.466;SB=-3.400e+01;SOR=1.085;STR;VQSLOD=8.68;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:237,0,157 1 62713224 rs2941679 C G 2489.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-1.506e+03;SOR=0.772;VQSLOD=6.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2518,181,0 1 62713246 rs10889315 G A 702.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.90;ReadPosRankSum=-0.579;SB=-3.330e+02;SOR=0.651;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:45,26:71:99:731,0,1271 1 62713469 rs10789108 T C 81.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.81;ReadPosRankSum=-0.738;SB=-1.765e+00;SOR=0.941;VQSLOD=9.31;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:99:110,0,250 1 62728784 rs2666472 A G 1616.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-5.210e+02;SOR=2.124;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1645,129,0 1 62728838 rs2258470 T C 1929.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.97;SB=-1.192e+03;SOR=0.781;VQSLOD=5.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:1958,141,0 1 62728861 rs2260581 T C 2223.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.46;SB=-1.434e+03;SOR=0.776;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2252,160,0 1 62728918 rs2262110 G A 2149.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-1.168e+03;SOR=0.910;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:70:99:2178,160,0 1 62729015 rs2262106 G A 983.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8663;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.59;SB=-5.050e+02;SOR=1.432;VQSLOD=4.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:72:1012,72,0 1 62733939 rs11207950 G A 452.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-0.017;SB=-8.800e+01;SOR=1.501;VQSLOD=7.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,17:35:99:481,0,443 1 62737372 rs4609464 A C 147.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.563;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.78;ReadPosRankSum=-0.720;SB=0.00;SOR=0.321;VQSLOD=9.19;culprit=QD GT:AD:DP:GQ:PL 0/1:12,7:19:99:176,0,408 1 62738904 rs7516290 T C 283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=4.665;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=1.600;SB=-8.400e+01;SOR=1.492;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:312,0,261 1 62739198 rs17855078 G A 1322.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.869;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=1.195;SB=-5.330e+02;SOR=0.904;VQSLOD=7.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,48:83:99:1351,0,849 1 62740065 rs12127930 A G 2453.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;DB;DP=199;Dels=0.00;ExcessHet=3.0103;FS=1.107;HaplotypeScore=3.5531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-1.131;SB=-1.507e+03;SOR=0.564;VQSLOD=7.41;culprit=DP GT:AD:DP:GQ:PL 0/1:99,100:199:99:2482,0,2430 1 62740446 rs2666506 T C 847.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.571;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=5.728;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=1.520;SB=-2.890e+02;SOR=1.309;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 0/1:53,32:85:99:876,0,1323 1 62740449 rs2666507 T C 835.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.937;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=3.073;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=1.302;SB=-2.860e+02;SOR=1.204;VQSLOD=6.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,32:85:99:864,0,1375 1 62939634 rs1168007 C T 1731.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.86;SB=-1.099e+03;SOR=0.762;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1760,129,0 1 62941168 rs11330816 GA G 150.75 PASS AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=18.84;RPA=12,11;RU=A;SB=-1.204e+01;SOR=2.833;STR;VQSLOD=5.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,8:11:24:188,24,0 1 62943264 rs1168008 C T 1867.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-5.780e+02;SOR=2.226;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1896,141,0 1 62945418 rs1183260 A G 277.80 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.37;SB=-2.471e+02;SOR=0.836;VQSLOD=3.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:21:306,21,0 1 62953183 rs1168025 C T 832.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=-1.523e+02;SOR=2.546;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:69:861,69,0 1 62960250 rs1168041 T C 784.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.07;SB=-3.677e+01;SOR=4.712;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:813,60,0 1 62970184 rs1168027 T C 571.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.44;SB=0.00;SOR=5.549;VQSLOD=8.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:600,45,0 1 62973795 rs1184865 A G 1005.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.53;SB=-1.951e+02;SOR=2.985;VQSLOD=7.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:78:1034,78,0 1 62976472 rs1168043 T G 838.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;SB=0.00;SOR=6.273;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:867,66,0 1 63001120 rs1168018 A C 2464.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-1.009e+03;SOR=1.609;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2493,184,0 1 63027411 rs5774610 AG A 1223.73 PASS AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.94;SB=-3.660e+02;SOR=1.863;VQSLOD=3.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:84:1261,84,0 1 63044645 . C CA 75.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.52;RPA=15,16;RU=A;ReadPosRankSum=1.854;SB=-3.100e+01;SOR=0.654;STR;VQSLOD=6.76;culprit=QD GT:AD:DP:GQ:PL 0/1:22,8:36:99:113,0,374 1 63066704 rs146832988 TTG T 966.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.33;ReadPosRankSum=0.469;SB=-1.350e+02;SOR=0.941;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 0/1:28,22:50:99:1004,0,1370 1 63066957 rs34927999 A G 732.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.714;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=0.944;SB=-3.401e+01;SOR=1.040;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:17,23:40:99:761,0,536 1 63113511 rs746735 C A 1025.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=-2.620e+02;SOR=2.235;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:78:1054,78,0 1 63306960 rs12743698 C T 86.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.791;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.23;ReadPosRankSum=1.188;SB=0.00;SOR=0.446;VQSLOD=9.10;culprit=QD GT:AD:DP:GQ:PL 0/1:7,5:12:99:115,0,242 1 63307303 rs3737892 A G 327.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.802;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.21;ReadPosRankSum=-0.267;SB=0.00;SOR=0.914;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:356,0,263 1 63788682 rs72912791 C T 417.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.054;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=0.668;SB=-4.800e+01;SOR=0.416;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:13,15:28:99:446,0,414 1 63789015 rs2274188 G T 318.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.682;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=0.364;SB=-6.800e+01;SOR=0.412;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:15,11:26:99:347,0,436 1 63825753 rs17575805 G A 118.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=10.925;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.90;ReadPosRankSum=0.707;SB=-9.400e+01;SOR=0.464;VQSLOD=4.57;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:147,0,176 1 63836513 rs34542411 C G 538.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-0.378;SB=-1.320e+02;SOR=0.538;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:20,22:42:99:567,0,628 1 63871881 rs1012872 A G 722.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.472;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.285;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=0.014;SB=-2.120e+02;SOR=1.065;VQSLOD=7.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,28:61:99:751,0,867 1 63872600 rs12755065 T C 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=-0.496;SB=0.00;SOR=0.368;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:8,5:13:99:163,0,267 1 63872871 rs6588028 A G 1089.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-3.670e+02;SOR=1.885;VQSLOD=7.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:81:1118,81,0 1 63881552 rs4630153 C T 1252.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.13;SB=-5.020e+02;SOR=1.775;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:93:1281,93,0 1 63912546 rs12760364 G T 308.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.82;ReadPosRankSum=-0.267;SB=-2.160e+02;SOR=0.631;VQSLOD=9.77;culprit=QD GT:AD:DP:GQ:PL 0/1:20,15:35:99:337,0,431 1 63912563 rs3838450 ACAATT A 861.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;DB;DP=30;ExcessHet=3.0103;FS=6.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=1.198;SB=-1.280e+02;SOR=2.303;VQSLOD=5.58;culprit=FS GT:AD:DP:GQ:PL 0/1:12,13:30:99:899,0,880 1 63991140 rs9436686 T C 590.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=0.00;SOR=5.670;VQSLOD=8.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:619,48,0 1 63991267 rs217478 T C 756.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=3.561;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-1.009;SB=-2.220e+02;SOR=1.241;VQSLOD=7.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,31:66:99:785,0,1018 1 63997633 rs9804078 A T 88.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=5.611;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.92;ReadPosRankSum=-0.916;SB=-2.657e-01;SOR=2.376;VQSLOD=5.82;culprit=QD GT:AD:DP:GQ:PL 0/1:11,4:15:99:117,0,290 1 63999087 rs217454 T C 422.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.650;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.123;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-0.899;SB=-8.497e+01;SOR=0.061;VQSLOD=8.57;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,16:29:99:451,0,388 1 63999826 rs6693255 C T 985.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.779;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=1.976;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-1.093;SB=-5.110e+02;SOR=0.474;VQSLOD=10.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,41:77:99:1014,0,1013 1 63999868 rs6657480 T C 774.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.743;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=4.798;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=1.346;SB=-1.260e+02;SOR=1.709;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 0/1:29,29:58:99:803,0,756 1 63999891 rs6657559 T C 732.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.516;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=0.462;SB=-1.420e+02;SOR=0.728;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:19,25:44:99:761,0,481 1 64015217 rs217485 G A 1706.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-4.750e+02;SOR=2.564;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1735,129,0 1 64021096 rs2273367 G A 1009.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=2.728;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=0.154;SB=-6.380e+02;SOR=0.436;VQSLOD=9.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,46:99:99:1038,0,1365 1 64036838 rs4915903 G A 681.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.555;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-0.422;SB=-1.810e+02;SOR=0.737;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:29,26:55:99:710,0,825 1 64038107 rs6588050 G T 30.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.321;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.20;ReadPosRankSum=-0.354;SB=-5.300e+01;SOR=0.223;VQSLOD=7.86;culprit=QD GT:AD:DP:GQ:PL 0/1:10,4:14:59:59,0,299 1 64095111 rs855314 A G 1097.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.766;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=4.298;HaplotypeScore=4.7182;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=-0.988;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-1.335;SB=-4.680e+02;SOR=1.230;VQSLOD=0.532;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,41:83:99:1126,0,1082 1 64095862 rs72681118 G A 341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.914;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=0.912;SB=0.00;SOR=0.892;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:9,11:20:99:370,0,304 1 64097432 rs1126728 C T 2132.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.47;SB=-1.326e+03;SOR=0.811;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2161,157,0 1 64100478 rs6588052 A T 2152.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-4.800e+02;SOR=2.730;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2181,160,0 1 64254671 rs72928705 A G 99.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.390;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.51;MQ0=0;MQRankSum=-3.951;QD=6.24;ReadPosRankSum=-0.991;SB=-1.709e+01;SOR=1.371;VQSLOD=1.11;culprit=QD GT:AD:DP:GQ:PL 0/1:8,8:16:99:128,0,248 1 64254712 . C T 108.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=48.94;MQ0=1;MQRankSum=-4.714;QD=4.18;ReadPosRankSum=2.672;SB=-2.402e+01;SOR=1.356;VQSLOD=7.900e-03;culprit=QD GT:AD:DP:GQ:PL 0/1:16,10:26:99:137,0,454 1 64254748 . C T 133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.69;MQ0=1;MQRankSum=-5.080;QD=4.46;ReadPosRankSum=-1.555;SB=-7.100e+01;SOR=1.270;VQSLOD=0.049;culprit=QD GT:AD:DP:GQ:PL 0/1:18,12:30:99:162,0,461 1 64254767 . T C 109.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.22;MQ0=1;MQRankSum=-4.940;QD=3.92;ReadPosRankSum=-1.778;SB=-7.000e+01;SOR=0.746;VQSLOD=0.763;culprit=QD GT:AD:DP:GQ:PL 0/1:18,10:28:99:138,0,415 1 64254768 . A G 77.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.171;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.22;MQ0=1;MQRankSum=-4.940;QD=2.78;ReadPosRankSum=-1.803;SB=-5.300e+01;SOR=0.746;VQSLOD=0.724;culprit=QD GT:AD:DP:GQ:PL 0/1:18,10:28:99:106,0,459 1 64254779 . T C 92.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.185;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.98;MQ0=1;MQRankSum=-4.864;QD=3.44;ReadPosRankSum=-0.973;SB=-6.900e+01;SOR=0.512;VQSLOD=0.706;culprit=QD GT:AD:DP:GQ:PL 0/1:18,9:27:99:121,0,477 1 64254783 . C T 70.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.12;MQ0=1;MQRankSum=-4.891;QD=2.62;ReadPosRankSum=-0.174;SB=-4.400e+01;SOR=0.754;VQSLOD=1.10;culprit=QD GT:AD:DP:GQ:PL 0/1:19,8:27:99:99,0,494 1 64254785 . T C 70.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.12;MQ0=1;MQRankSum=-4.891;QD=2.62;ReadPosRankSum=-0.029;SB=-4.100e+01;SOR=0.754;VQSLOD=1.08;culprit=QD GT:AD:DP:GQ:PL 0/1:19,8:27:99:99,0,492 1 64309265 rs602934 A C 90.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=4.393;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.25;ReadPosRankSum=2.609;SB=-4.276e+01;SOR=0.061;VQSLOD=8.12;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,4:11:99:119,0,251 1 64309302 rs583102 A C 185.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.233;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=1.440;SB=-1.175e+02;SOR=0.093;VQSLOD=9.00;culprit=SOR GT:AD:DP:GQ:PL 0/1:3,7:10:85:214,0,85 1 64474804 rs285399 C T 578.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.56;SB=-3.050e+02;SOR=1.230;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:45:607,45,0 1 64515379 rs1772626 C T 2005.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=-7.970e+02;SOR=1.646;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2034,150,0 1 64608329 rs2762833 G T 2403.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;SB=-1.224e+03;SOR=1.236;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2432,181,0 1 64624612 rs4362024 G A 1136.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.45;SB=-6.997e+01;SOR=4.743;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:93:1165,93,0 1 64624842 rs6668545 A G 1193.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.872;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.655;SB=-5.590e+02;SOR=0.527;VQSLOD=10.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,46:83:99:1222,0,1025 1 64643277 rs7527017 C T 1668.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=1.408;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=0.162;SB=-1.040e+03;SOR=0.573;VQSLOD=9.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,63:124:99:1697,0,1631 1 64669567 rs2806529 A T 591.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.065;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.150;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.493;SB=-2.240e+02;SOR=1.096;VQSLOD=7.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,22:49:99:620,0,760 1 64671474 rs12407030 T A 93.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.377;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.84;ReadPosRankSum=1.122;SB=-1.905e+01;SOR=0.648;VQSLOD=8.30;culprit=QD GT:AD:DP:GQ:PL 0/1:27,6:33:99:122,0,846 1 64698411 rs2029868 T C 382.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.202;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=0.700;SB=-9.700e+01;SOR=0.368;VQSLOD=10.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,14:34:99:411,0,591 1 64709891 rs10789152 A G 667.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.713;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.224;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-2.155;SB=-2.880e+02;SOR=0.472;VQSLOD=9.54;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:21,30:51:99:696,0,563 1 64726414 rs705542 A C 392.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.423;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.030;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=0.670;SB=-2.010e+02;SOR=0.296;VQSLOD=9.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,18:41:99:421,0,618 1 65016349 rs2164571 A T 3303.77 PASS AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.50;SB=-1.957e+03;SOR=0.844;VQSLOD=5.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,112:112:99:3332,244,0 1 65045602 rs5774708 TA T 872.70 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.66;MQ0=0;MQRankSum=0.698;POSITIVE_TRAIN_SITE;QD=17.81;RPA=12,11;RU=A;ReadPosRankSum=0.687;SB=-2.672e+02;SOR=0.610;STR;VQSLOD=3.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,43:49:6:909,0,6 1 65068638 rs6665437 T C 1972.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.18;SB=-7.610e+02;SOR=1.819;VQSLOD=6.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2001,153,0 1 65095054 rs17383227 G A 942.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.433;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=3.002;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=1.049;SB=-4.570e+02;SOR=1.059;VQSLOD=7.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,39:80:99:971,0,1052 1 65099978 rs2118102 G A 693.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.29;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.75;SB=-3.060e+02;SOR=1.609;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:54:722,54,0 1 65100057 . G GTATT 181.87 PASS AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=64.19;MQ0=0;QD=27.28;SB=0.00;SOR=3.611;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,5:10:15:219,15,0 1 65107372 rs6664905 C T 481.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-7.697e+01;SOR=3.126;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:510,39,0 1 65107850 rs893074 T C 610.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.56;SB=-3.250e+02;SOR=1.426;VQSLOD=5.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:48:639,48,0 1 65113351 rs7534210 T C 834.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.02;SB=0.00;SOR=6.273;VQSLOD=8.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:863,66,0 1 65113568 rs6588100 T C 4735.77 PASS AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3498;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-2.552e+03;SOR=0.927;VQSLOD=6.66;culprit=DP GT:AD:DP:GQ:PL 1/1:0,159:159:99:4764,352,0 1 65138787 . G GA 523.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.485;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.40;RPA=13,14;RU=A;ReadPosRankSum=0.958;SB=-8.701e+01;SOR=1.179;STR;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 1/1:3,24:27:19:506,19,0 1 65141676 rs71742501 TTAATAATAATAA T,TTAATAATAA 2655.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.950;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQ0=0;MQRankSum=0.387;QD=33.20;RPA=15,11,14;RU=TAA;ReadPosRankSum=1.558;SB=-3.640e+02;SOR=1.445;STR;VQSLOD=1.49;culprit=MQRankSum GT:AD:DP:GQ:PL 1/2:2,17,13:73:99:2693,518,1621,1697,0,1692 1 65144191 rs2478156 G C 399.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.256;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.215;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=-0.824;SB=-5.200e+01;SOR=1.376;VQSLOD=6.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,15:39:99:428,0,633 1 65255018 rs2500232 G A 1167.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.523;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=11.883;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-0.064;SB=-3.120e+02;SOR=0.095;VQSLOD=5.42;culprit=FS GT:AD:DP:GQ:PL 0/1:49,45:94:99:1196,0,1582 1 65303510 rs4916004 G A 623.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.131;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.90;ReadPosRankSum=-0.206;SB=-6.500e+01;SOR=0.804;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:12,21:33:99:652,0,366 1 65311262 rs2230587 G A 1121.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=0.719;SB=-7.100e+02;SOR=0.684;VQSLOD=9.10;culprit=FS GT:AD:DP:GQ:PL 0/1:45,47:92:99:1150,0,1199 1 65830608 rs1570868 T C 1311.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.42;SB=-2.391e+02;SOR=3.086;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:96:1340,96,0 1 65832014 rs35329755 A G 316.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.743;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=-0.454;SB=0.00;SOR=0.693;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:345,0,328 1 65844963 rs3818449 A G 3306.77 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.49;SB=-1.251e+03;SOR=1.725;VQSLOD=5.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:105:99:3335,241,0 1 65845042 rs2296480 A T 1747.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.433;DB;DP=172;Dels=0.00;ExcessHet=3.0103;FS=2.672;HaplotypeScore=3.5616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=0.026;SB=-1.035e+03;SOR=0.515;VQSLOD=6.32;culprit=DP GT:AD:DP:GQ:PL 0/1:97,75:172:99:1776,0,2606 1 65845076 rs2296481 C T 1647.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.599;DB;DP=167;Dels=0.00;ExcessHet=3.0103;FS=0.568;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=-0.050;SB=-1.017e+03;SOR=0.642;VQSLOD=7.58;culprit=DP GT:AD:DP:GQ:PL 0/1:93,74:167:99:1676,0,2587 1 65852870 rs9436725 A G 485.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.99;SB=-2.451e+02;SOR=1.493;VQSLOD=5.35;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,18:18:36:514,36,0 1 65858088 rs6588144 T C 544.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.170;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.978;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.082;SB=-2.430e+02;SOR=0.301;VQSLOD=10.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,21:44:99:573,0,734 1 65858145 rs4325172 G A 763.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.526;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=2.007;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=0.103;SB=-4.380e+02;SOR=0.423;VQSLOD=9.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,33:77:99:792,0,1295 1 65858151 rs11208644 C T 1164.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.890;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-0.570;SB=-5.300e+02;SOR=0.992;VQSLOD=7.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,46:80:99:1193,0,825 1 65860660 rs12077111 T C 673.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.100;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.53;ReadPosRankSum=-0.221;SB=-3.580e+02;SOR=0.991;VQSLOD=6.41;culprit=QD GT:AD:DP:GQ:PL 0/1:48,31:79:99:702,0,1274 1 65860687 rs4582839 A C 2348.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-1.505e+03;SOR=0.746;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2377,172,0 1 65860874 rs3930551 T G 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=-0.192;SB=0.00;SOR=0.307;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:9,5:14:99:163,0,309 1 65867391 rs4592284 C G 2119.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.61;SB=-1.187e+03;SOR=0.925;VQSLOD=4.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2148,154,0 1 65867519 rs4915691 G A 1147.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.287;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=-0.522;SB=-7.450e+02;SOR=0.737;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:28,45:73:99:1176,0,785 1 65867715 rs4915692 C T 279.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.848;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.02;ReadPosRankSum=-1.462;SB=-8.300e+01;SOR=0.871;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:18,13:31:99:308,0,490 1 65874626 . A AT 234.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.18;RPA=10,11;RU=T;ReadPosRankSum=-1.887;SB=-3.277e+01;SOR=0.307;STR;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:9,12:29:99:272,0,167 1 65886398 rs3790435 T C 550.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.903;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=0.198;SB=-1.810e+02;SOR=0.646;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:17,20:37:99:579,0,414 1 65886448 rs3790434 T C 548.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=0.268;SB=-2.850e+02;SOR=0.546;VQSLOD=10.16;culprit=FS GT:AD:DP:GQ:PL 0/1:24,24:48:99:577,0,674 1 65887013 rs12145690 A C 1709.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.313;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=-0.215;SB=-9.340e+02;SOR=0.695;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:62,67:129:99:1738,0,1630 1 66036501 rs2186248 G T 783.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.35;SB=-1.891e+02;SOR=2.584;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:812,60,0 1 66058513 rs1137101 A G 1698.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.369;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=0.647;HaplotypeScore=3.4990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=0.572;SB=-5.900e+02;SOR=0.798;VQSLOD=8.27;culprit=DP GT:AD:DP:GQ:PL 0/1:87,67:154:99:1727,0,2383 1 66064293 rs3762273 A C 756.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.620;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.322;HaplotypeScore=6.8124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=0.422;SB=-1.140e+02;SOR=0.986;VQSLOD=7.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,28:60:99:785,0,825 1 66067109 rs1805134 T C 323.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.644;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.318;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=-2.933;SB=-2.801e+01;SOR=1.473;VQSLOD=5.42;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:10,11:21:99:352,0,289 1 66075586 rs74733149 A G 374.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.064;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.982;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=0.511;SB=-2.402e+01;SOR=1.292;VQSLOD=6.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,13:36:99:403,0,649 1 66081664 rs13306520 A G 841.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.879;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=3.442;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=1.372;SB=-5.900e+01;SOR=1.493;VQSLOD=6.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,28:53:99:870,0,710 1 66085574 rs3790439 T A 207.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.371;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=-0.204;SB=-6.400e+01;SOR=1.022;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:10,9:19:99:236,0,252 1 66088701 rs12067936 C A 648.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.197;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.089;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=0.485;SB=-2.270e+02;SOR=0.888;VQSLOD=7.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,26:58:99:677,0,840 1 66102257 rs1805096 G A 802.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=1.928;SB=-3.950e+02;SOR=0.742;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:35,31:66:99:831,0,974 1 66102755 rs372883666 A ATTACT 479.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.56;ReadPosRankSum=-0.497;SB=-8.576e+01;SOR=0.175;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:517,0,482 1 66618300 rs114287158 T A 316.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.80;SB=-7.597e+01;SOR=2.494;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:345,27,0 1 66829262 rs783039 A G 2737.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=-1.067e+03;SOR=1.668;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2766,202,0 1 66831370 rs783036 G A 2373.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.60;SB=-1.426e+03;SOR=0.928;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2402,175,0 1 67093899 rs151209519 A T 232.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.047;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=1.156;SB=-1.765e+00;SOR=1.445;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 0/1:10,8:18:99:261,0,294 1 67094171 rs12402181 G A 1263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.869;HaplotypeScore=1.8308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.00;ReadPosRankSum=0.480;SB=-6.140e+02;SOR=0.871;VQSLOD=7.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,45:80:99:1292,0,990 1 67094336 rs4655646 G A 473.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.84;SB=-4.076e+01;SOR=3.912;VQSLOD=7.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:502,39,0 1 67099488 . G GA 72.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.61;RPA=9,10;RU=A;ReadPosRankSum=-1.072;SB=0.00;SOR=0.551;STR;VQSLOD=9.14;culprit=QD GT:AD:DP:GQ:PL 0/1:6,5:11:99:110,0,126 1 67109335 rs7526812 A G 1096.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.998;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.865;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-0.443;SB=-5.160e+02;SOR=0.569;VQSLOD=9.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,43:84:99:1125,0,1086 1 67125932 . G GAGGA 694.73 PASS AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=64.03;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.00;RPA=2,3;RU=AGGA;SB=-4.376e+01;SOR=3.767;STR;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:732,39,0 1 67125952 rs12746750 A T 353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.317;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=62.96;MQ0=0;MQRankSum=-1.398;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=-2.399;SB=-2.901e+01;SOR=0.776;VQSLOD=3.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,13:25:99:382,0,366 1 67126114 rs12094526 A G 2470.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-1.567e+03;SOR=0.770;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2499,178,0 1 67133111 rs11208941 T C 1051.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.442;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.924;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.259;SB=-5.760e+02;SOR=0.597;VQSLOD=8.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,37:70:99:1080,0,737 1 67138877 rs35377023 AG A 548.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.412;DB;DP=32;ExcessHet=3.0103;FS=1.845;MLEAC=1;MLEAF=0.500;MQ=60.34;MQ0=0;MQRankSum=1.063;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=-0.094;SB=-1.280e+02;SOR=0.239;VQSLOD=0.512;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,16:32:99:586,0,667 1 67145322 rs10889644 C A 1188.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.96;SB=-3.140e+02;SOR=2.368;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:93:1217,93,0 1 67147691 rs17129329 A G 1402.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=4.247;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=0.935;SB=-6.790e+02;SOR=1.166;VQSLOD=7.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,56:89:99:1431,0,865 1 67149706 rs10749764 G C 1057.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=-4.176e+01;SOR=5.283;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:81:1086,81,0 1 67154730 rs139348429 CAA C 467.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.59;RPA=17,15;RU=A;ReadPosRankSum=0.445;SB=-1.230e+02;SOR=0.892;STR;VQSLOD=10.11;culprit=FS GT:AD:DP:GQ:PL 0/1:12,18:30:99:505,0,222 1 67160336 rs2146904 A G 664.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.011;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=7.475;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-0.501;SB=-7.800e+01;SOR=1.981;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 0/1:25,22:47:99:693,0,688 1 67160814 rs1325267 C T 125.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.002;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.663;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.86;ReadPosRankSum=1.588;SB=-9.732e-01;SOR=1.445;VQSLOD=6.20;culprit=QD GT:AD:DP:GQ:PL 0/1:11,5:16:99:154,0,329 1 67195184 rs1032635 C G 689.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=2.299;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=0.035;SB=-3.050e+02;SOR=0.399;VQSLOD=9.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,29:71:99:718,0,1218 1 67195192 rs1032634 C G 579.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.182;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=0.759;SB=-1.860e+02;SOR=0.483;VQSLOD=9.06;culprit=QD GT:AD:DP:GQ:PL 0/1:38,24:62:99:608,0,1151 1 67236329 . G A 124.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.48;ReadPosRankSum=-1.321;SB=0.00;SOR=0.693;VQSLOD=8.45;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:153,0,173 1 67242200 rs7541120 G A 307.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.791;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=11.606;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=1.360;SB=-1.712e+02;SOR=0.039;VQSLOD=4.41;culprit=FS GT:AD:DP:GQ:PL 0/1:15,13:28:99:336,0,491 1 67243024 rs2133173 C A 1504.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.103;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.657;HaplotypeScore=3.9147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-1.600;SB=-9.640e+02;SOR=0.760;VQSLOD=8.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,61:124:99:1533,0,1674 1 67266756 rs549148 T A 1304.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=2.816;HaplotypeScore=3.5973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.00;ReadPosRankSum=-0.230;SB=-7.150e+02;SOR=0.927;VQSLOD=7.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,48:87:99:1333,0,1010 1 67288045 rs482082 C T 860.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.243;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=0.450;SB=-3.040e+02;SOR=0.631;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:31,33:64:99:889,0,883 1 67292473 rs67495325 A AT 1601.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;DB;DP=76;ExcessHet=3.0103;FS=3.952;MLEAC=1;MLEAF=0.500;MQ=60.14;MQ0=0;MQRankSum=1.000;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.08;ReadPosRankSum=-1.377;SB=-4.440e+02;SOR=0.304;VQSLOD=0.477;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,39:76:99:1639,0,1431 1 67292478 rs36067642 T A 1044.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.141;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=2.144;HaplotypeScore=3.7876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-1.946;SB=-3.670e+02;SOR=0.413;VQSLOD=9.29;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:37,42:79:99:1073,0,1072 1 67303303 rs6698076 A G 441.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.547;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=4.781;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=0.969;SB=-2.601e+01;SOR=2.232;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 0/1:16,15:31:99:470,0,394 1 67306054 rs11208966 C A 719.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=1.252;SB=-4.076e+01;SOR=0.286;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:19,23:42:99:748,0,613 1 67313249 rs57010209 G A 1398.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.402;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.758;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=-0.623;SB=-7.940e+02;SOR=0.815;VQSLOD=7.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,57:101:99:1427,0,1039 1 67390416 rs3008858 G C 3953.77 PASS AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-1.841e+03;SOR=1.430;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,126:126:99:3982,289,0 1 67390468 rs1886686 C G 2287.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.92;SB=-4.490e+02;SOR=3.091;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2316,169,0 1 67396222 rs3008861 T G 545.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=0.00;SOR=5.421;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:574,42,0 1 67425494 . A AT 246.74 PASS AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.67;RPA=11,12;RU=T;SB=-8.951e+01;SOR=1.609;STR;VQSLOD=5.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:12:30:284,30,0 1 67487119 rs2065002 C A 1206.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.17;SB=-7.590e+02;SOR=0.793;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:90:1235,90,0 1 67508080 rs10546548 CCACT C 595.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;DB;DP=33;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=-0.635;SB=-5.900e+01;SOR=1.204;VQSLOD=7.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,11:33:99:633,0,1445 1 67512861 rs2273680 G T 429.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.076;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=-1.389;SB=-1.135e+02;SOR=0.273;VQSLOD=8.67;culprit=FS GT:AD:DP:GQ:PL 0/1:4,17:21:99:458,0,116 1 67512903 rs1024229 G T 344.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.030;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=7.824;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.41;ReadPosRankSum=-1.361;SB=-4.300e+01;SOR=2.081;VQSLOD=5.90;culprit=QD GT:AD:DP:GQ:PL 0/1:27,14:41:99:373,0,676 1 67512920 rs1024230 A C 366.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.697;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=10.227;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.53;ReadPosRankSum=-0.920;SB=-3.800e+01;SOR=2.379;VQSLOD=5.79;culprit=FS GT:AD:DP:GQ:PL 0/1:29,14:43:99:395,0,760 1 67515563 rs3048488 CAT C 600.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.962;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQ0=0;MQRankSum=1.077;POSITIVE_TRAIN_SITE;QD=23.11;ReadPosRankSum=-0.359;SB=-2.500e+02;SOR=0.693;VQSLOD=4.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,13:26:99:638,0,691 1 67558739 rs6588237 C T 1122.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.35;SB=-4.350e+02;SOR=1.802;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:87:1151,87,0 1 67560897 rs10889653 A G 1621.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.45;SB=-6.080e+02;SOR=2.107;VQSLOD=5.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1650,129,0 1 67560956 rs11208997 C T 2558.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.81;SB=-1.341e+03;SOR=1.280;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,92:92:99:2587,190,0 1 67562106 rs6670381 G T 559.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.45;SB=0.00;SOR=5.549;VQSLOD=8.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:588,45,0 1 67568824 rs1885276 G T 359.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=0.00;SOR=4.804;VQSLOD=8.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:388,30,0 1 67577367 rs6588240 A T 788.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.21;SB=-2.800e+02;SOR=2.066;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:60:817,60,0 1 67579386 rs2144656 A G 1349.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-5.280e+02;SOR=1.609;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1378,99,0 1 67591347 rs6691094 A G 363.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=0.00;SOR=4.977;VQSLOD=7.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:392,33,0 1 67591611 . GAA G 204.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.10;MQ0=0;MQRankSum=1.524;POSITIVE_TRAIN_SITE;QD=10.24;RPA=19,17;RU=A;ReadPosRankSum=-0.340;SB=-2.818e+01;SOR=0.693;STR;VQSLOD=2.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,10:25:97:242,0,97 1 67591660 rs4655520 G A 362.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SB=0.00;SOR=4.804;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:391,30,0 1 67633812 rs1884444 G T 508.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.735;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.224;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.44;ReadPosRankSum=0.148;SB=-2.720e+02;SOR=1.136;VQSLOD=6.22;culprit=QD GT:AD:DP:GQ:PL 0/1:54,25:79:99:537,0,1330 1 67648460 rs6687620 T C 834.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SB=-1.841e+02;SOR=2.670;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:63:863,63,0 1 67685387 rs7530511 T C 1375.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-4.650e+02;SOR=1.954;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1404,111,0 1 67685443 rs7518660 G A 240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=6.160;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-0.772;SB=-5.150e-01;SOR=2.636;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 0/1:12,8:20:99:269,0,344 1 67705574 rs10789229 C T 463.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.115;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.543;SB=-9.600e+01;SOR=0.818;VQSLOD=10.02;culprit=FS GT:AD:DP:GQ:PL 0/1:24,17:41:99:492,0,687 1 67705726 rs10889671 A G 2779.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-1.702e+03;SOR=0.924;VQSLOD=6.95;culprit=DP GT:AD:DP:GQ:PL 1/1:0,94:94:99:2808,205,0 1 67795319 rs1495963 T C 3915.77 PASS AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2629;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.58;SB=-2.237e+03;SOR=0.737;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,137:137:99:3944,301,0 1 67796258 rs11463498 G GT 121.19 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.036;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;RPA=12,13;RU=T;ReadPosRankSum=1.645;SB=0.00;SOR=3.258;STR;VQSLOD=5.12;culprit=FS GT:AD:DP:GQ:PL 1/1:1,9:10:4:157,4,0 1 67852141 rs12138812 A G 1488.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.46;SB=-1.583e+02;SOR=4.125;VQSLOD=4.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1517,111,0 1 67852335 rs2228420 G A 4369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.13;SB=-2.575e+03;SOR=0.992;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,150:150:99:4398,325,0 1 67856021 rs2270614 A G 499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=0.00;SOR=5.421;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:528,39,0 1 67861520 rs2229546 C A 2529.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.19;SB=-1.022e+03;SOR=1.457;VQSLOD=4.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2558,193,0 1 68151980 rs2759219 T G 1344.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;SB=-3.900e+02;SOR=2.191;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1373,102,0 1 68173264 rs2295942 C T 4323.77 PASS AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-2.558e+03;SOR=0.829;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,139:139:99:4352,322,0 1 68593131 rs4655776 C G 448.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.207;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.51;ReadPosRankSum=-0.129;SB=-3.876e+01;SOR=0.527;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:8,15:23:99:477,0,254 1 68603731 rs1831297 A G 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.15;ReadPosRankSum=-0.705;SB=0.00;SOR=1.022;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:246,0,160 1 68613933 rs2303949 C T 518.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-1.442;SB=-1.770e+02;SOR=0.850;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 0/1:28,19:47:99:547,0,763 1 68614013 rs2566789 A G 1207.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-5.830e+02;SOR=0.927;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:90:1236,90,0 1 68619511 rs1430759 G A 202.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-0.496;SB=0.00;SOR=0.693;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:231,0,244 1 68620998 rs2820488 C G 315.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.654;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-0.099;SB=-3.777e+01;SOR=0.191;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:11,11:22:99:344,0,384 1 68627462 rs112755755 T C 44.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.80;MQ0=0;MQRankSum=-2.838;QD=3.73;ReadPosRankSum=-1.543;SB=-1.765e+00;SOR=1.179;VQSLOD=1.38;culprit=QD GT:AD:DP:GQ:PL 0/1:9,3:12:73:73,0,208 1 68627567 . A C 147.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=33.5887;MLEAC=1;MLEAF=0.500;MQ=56.69;MQ0=0;MQRankSum=-3.720;QD=6.42;ReadPosRankSum=0.775;SB=-7.400e+01;SOR=1.112;VQSLOD=0.786;culprit=QD GT:AD:DP:GQ:PL 0/1:15,8:23:99:176,0,430 1 68627568 . C A 332.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.218;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=33.5887;MLEAC=1;MLEAF=0.500;MQ=56.69;MQ0=0;MQRankSum=0.000;QD=22.18;ReadPosRankSum=-1.410;SB=-1.730e+02;SOR=0.446;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 0/1:5,10:23:99:289,0,123 1 68627602 rs77877095 G C 164.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.02;MQ0=0;MQRankSum=-3.757;QD=7.16;ReadPosRankSum=-1.242;SB=-1.550e+02;SOR=0.569;VQSLOD=1.49;culprit=QD GT:AD:DP:GQ:PL 0/1:13,10:23:99:193,0,392 1 68627612 rs78427591 G A 156.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.121;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.44;MQ0=0;MQRankSum=-3.609;QD=7.13;ReadPosRankSum=-0.410;SB=-9.300e+01;SOR=0.859;VQSLOD=1.74;culprit=QD GT:AD:DP:GQ:PL 0/1:14,8:22:99:185,0,393 1 68627623 rs113755482 T G 152.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.970;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8833;MLEAC=1;MLEAF=0.500;MQ=57.38;MQ0=0;MQRankSum=-3.333;QD=7.64;ReadPosRankSum=-0.397;SB=-6.200e+01;SOR=1.022;VQSLOD=1.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,7:20:99:181,0,379 1 68627626 rs112064150 G A 140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8833;MLEAC=1;MLEAF=0.500;MQ=57.38;MQ0=0;MQRankSum=-3.333;QD=7.04;ReadPosRankSum=-0.238;SB=-3.600e+01;SOR=1.022;VQSLOD=1.68;culprit=QD GT:AD:DP:GQ:PL 0/1:13,7:20:99:169,0,401 1 68627633 rs368589920 T C 152.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.695;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8833;MLEAC=1;MLEAF=0.500;MQ=57.38;MQ0=0;MQRankSum=-3.333;QD=7.64;ReadPosRankSum=-0.396;SB=-6.000e+01;SOR=1.022;VQSLOD=1.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,7:20:99:181,0,384 1 68627651 . G T 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.122;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=58.51;MQ0=0;MQRankSum=-2.903;QD=7.93;ReadPosRankSum=-0.101;SB=-5.800e+01;SOR=1.112;VQSLOD=1.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,6:17:99:163,0,301 1 68627692 rs12029634 G T 99.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.682;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9989;MLEAC=1;MLEAF=0.500;MQ=57.58;MQ0=0;MQRankSum=1.812;POSITIVE_TRAIN_SITE;QD=7.13;ReadPosRankSum=-0.313;SB=-2.501e+01;SOR=0.412;VQSLOD=3.45;culprit=QD GT:AD:DP:GQ:PL 0/1:8,6:14:99:128,0,217 1 68628198 rs1808598 A G 474.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.550;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.7313;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=-1.476;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-2.140;SB=-2.770e+02;SOR=0.723;VQSLOD=2.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,17:36:99:503,0,417 1 68628201 rs1808599 C T 442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.5968;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=2.013;SB=-3.020e+02;SOR=0.693;VQSLOD=9.19;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:15,19:36:99:471,0,449 1 68628372 rs11803411 G A 445.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.109;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.448;HaplotypeScore=11.8395;MLEAC=1;MLEAF=0.500;MQ=57.99;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-0.122;SB=-1.930e+02;SOR=1.609;VQSLOD=6.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,19:35:99:474,0,342 1 68628440 . T G 59.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.894;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=56.65;MQ0=0;MQRankSum=-4.661;QD=2.06;ReadPosRankSum=1.295;SB=-5.000e+01;SOR=0.275;VQSLOD=0.574;culprit=QD GT:AD:DP:GQ:PL 0/1:23,6:29:88:88,0,631 1 68628482 . G A 53.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.425;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.48;MQ0=0;MQRankSum=-3.037;QD=3.16;ReadPosRankSum=0.947;SB=-2.501e+01;SOR=0.382;VQSLOD=1.59;culprit=QD GT:AD:DP:GQ:PL 0/1:14,3:17:82:82,0,360 1 68628490 . A G 59.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=-2.553;QD=4.60;ReadPosRankSum=0.254;SB=-2.402e+01;SOR=0.446;VQSLOD=1.98;culprit=QD GT:AD:DP:GQ:PL 0/1:10,3:13:88:88,0,262 1 68652084 rs2772297 T C 512.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=0.00;SOR=5.549;VQSLOD=8.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:541,42,0 1 68896644 rs932783 G A 438.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.435;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.88;ReadPosRankSum=-0.386;SB=0.00;SOR=0.846;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:12,14:26:99:467,0,355 1 68896945 RISN_RPE65 T G 1795.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.528;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=2.713;HaplotypeScore=2.8799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=0.381;SB=-9.800e+02;SOR=0.746;VQSLOD=5.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,61:98:99:1824,0,957 1 68903942 RISN_RPE65 C T 491.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=1.974;SB=-3.370e+02;SOR=0.667;VQSLOD=8.93;culprit=QD GT:AD:DP:GQ:PL 0/1:34,24:58:99:520,0,864 1 68904513 rs12138573 A G 152.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.102;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=0.763;SB=0.00;SOR=0.569;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:181,0,233 1 68905358 rs1925955 G C 541.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.046;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.224;HaplotypeScore=6.5857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-0.488;SB=-1.610e+02;SOR=0.978;VQSLOD=7.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,21:51:99:570,0,886 1 68943436 rs1924542 G A 54.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=6.803;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.91;ReadPosRankSum=-0.156;SB=-6.829e-02;SOR=2.817;VQSLOD=5.06;culprit=QD GT:AD:DP:GQ:PL 0/1:11,3:14:83:83,0,272 1 68943442 rs3790476 A G 50.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.724;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=5.880;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.38;ReadPosRankSum=0.072;SB=-1.352e-01;SOR=2.833;VQSLOD=5.56;culprit=QD GT:AD:DP:GQ:PL 0/1:12,3:15:79:79,0,263 1 68944633 rs12759438 A T 948.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=1.733;HaplotypeScore=2.6492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=-0.992;SB=-4.680e+02;SOR=0.775;VQSLOD=7.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,37:92:99:977,0,1348 1 68947318 . C CA 142.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.29;RPA=5,6;RU=A;ReadPosRankSum=-0.531;SB=-6.700e+01;SOR=0.616;STR;VQSLOD=9.03;culprit=QD GT:AD:DP:GQ:PL 0/1:19,8:28:99:180,0,501 1 68952564 rs138180992 AAC A 184.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.941;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.87;RPA=20,19;RU=AC;ReadPosRankSum=0.293;SB=-9.800e+01;SOR=0.586;STR;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:21:99:222,0,340 1 70034263 rs72671185 C G 754.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.636;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5398;MLEAC=1;MLEAF=0.500;MQ=61.21;MQ0=0;MQRankSum=-1.172;POSITIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=-1.105;SB=-4.860e+02;SOR=0.658;VQSLOD=1.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,33:89:99:783,0,1520 1 70034370 rs35356508 C CCAGCCGCGTG 6236.73 PASS AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-2.306e+03;SOR=1.414;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:6274,151,0 1 70304758 rs12735430 A G 112.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.615;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.63;ReadPosRankSum=-0.047;SB=-9.700e+01;SOR=0.283;VQSLOD=9.39;culprit=QD GT:AD:DP:GQ:PL 0/1:9,8:18:99:141,0,224 1 70397087 rs7530457 T C 2445.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.230;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=1.259;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=-1.388;SB=-1.496e+03;SOR=0.579;VQSLOD=8.06;culprit=DP GT:AD:DP:GQ:PL 0/1:70,86:156:99:2474,0,1774 1 70518558 rs2421317 G T 156.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.144;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=0.791;SB=0.00;SOR=0.582;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:185,0,277 1 70518561 rs2421318 A C 208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.780;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=0.791;SB=0.00;SOR=0.582;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:237,0,265 1 70555549 . T C 484.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.162;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.16;ReadPosRankSum=-0.419;SB=-1.070e+02;SOR=0.631;VQSLOD=8.67;culprit=FS GT:AD:DP:GQ:PL 0/1:13,17:30:99:513,0,418 1 70587360 rs641909 C T 1329.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-3.310e+02;SOR=2.476;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1358,102,0 1 70614427 rs476591 T C 353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.930;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.188;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=0.653;SB=-3.277e+01;SOR=0.169;VQSLOD=10.21;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,12:25:99:382,0,441 1 70820008 rs61782675 C T 930.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.235;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.176;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=-1.279;SB=-4.110e+02;SOR=1.391;VQSLOD=6.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,35:66:99:959,0,741 1 70820880 rs55863806 G A 598.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.463;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.588;HaplotypeScore=2.8313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=-1.217;SB=-1.510e+02;SOR=1.134;VQSLOD=7.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,23:56:99:627,0,946 1 70883840 rs1145920 A G 357.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=0.00;SOR=4.804;VQSLOD=8.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:386,30,0 1 70904523 rs372730812 T TTGTG,TTGTGTG 1460.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.43;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.78;RPA=14,16,17;RU=TG;SB=-1.520e+02;SOR=3.912;STR;VQSLOD=5.74;culprit=FS GT:AD:DP:GQ:PL 1/2:0,13,9:50:99:1498,335,259,527,0,517 1 70904800 rs1021737 G T 912.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.581;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=2.952;HaplotypeScore=2.7774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=0.788;SB=-5.550e+02;SOR=0.962;VQSLOD=7.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,40:84:99:941,0,1124 1 71327942 rs34745168 A G 1488.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.425;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=-0.228;SB=-4.070e+02;SOR=0.793;VQSLOD=7.97;culprit=FS GT:AD:DP:GQ:PL 0/1:51,55:107:99:1517,0,1349 1 71328234 rs7533733 A G 581.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.22;SB=-3.976e+01;SOR=4.294;VQSLOD=7.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:610,48,0 1 71331498 rs1409986 A G 1616.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=-7.160e+02;SOR=1.244;VQSLOD=7.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1645,123,0 1 71351785 rs11209707 C T 400.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.252;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=2.170;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=0.695;SB=-1.010e+02;SOR=0.252;VQSLOD=10.19;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,17:31:99:429,0,439 1 71419499 rs571705 C T 740.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-3.020e+02;SOR=1.609;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:57:769,57,0 1 71533287 rs66461782 A T 67.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.16;ReadPosRankSum=-0.361;SB=-3.000e+01;SOR=0.693;VQSLOD=8.97;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:96:96,0,212 1 71537943 rs11209745 A G 319.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.14;ReadPosRankSum=-0.862;SB=-1.750e+02;SOR=0.631;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:19,16:35:99:348,0,417 1 71544079 rs10574763 CAAG C 936.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQ0=0;MQRankSum=1.352;POSITIVE_TRAIN_SITE;QD=30.22;ReadPosRankSum=0.378;SB=-1.250e+02;SOR=0.941;VQSLOD=3.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,17:31:99:974,0,833 1 72058367 rs1334004 C T 716.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.94;SB=-4.176e+01;SOR=4.615;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:21:60:745,60,0 1 72058405 rs1334005 T C 1448.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.88;SB=-1.643e+02;SOR=3.258;VQSLOD=4.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1477,111,0 1 72058552 rs1413368 G A 3521.77 PASS AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-2.121e+03;SOR=0.710;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,115:115:99:3550,259,0 1 72242039 rs6424448 G A 401.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=-7.997e+01;SOR=2.670;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:430,33,0 1 72400656 rs11209871 A G 347.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.843;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=0.551;SB=0.00;SOR=0.551;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:13,11:24:99:376,0,438 1 72747844 rs3101341 C T 378.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.43;SB=0.00;SOR=4.977;VQSLOD=8.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:407,33,0 1 74507711 rs7538410 T G 101.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.513;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=0.179;SB=-9.732e-01;SOR=1.981;VQSLOD=6.02;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:99:130,0,182 1 74575182 rs1340472 C T 650.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.258;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.098;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=-1.001;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-0.935;SB=-3.940e+02;SOR=0.436;VQSLOD=0.599;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,28:54:99:679,0,580 1 74646514 rs6701961 C T 1029.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.21;SB=-2.800e+02;SOR=2.517;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:78:1058,78,0 1 74666507 rs9804006 T C 712.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.347;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=0.303;SB=-3.250e+02;SOR=1.102;VQSLOD=7.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,27:53:99:741,0,545 1 74666673 rs149618537 CTGTA C 435.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.68;ReadPosRankSum=-0.319;SB=0.00;SOR=1.609;VQSLOD=8.10;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:12:99:473,0,185 1 74669973 rs9425024 T G 359.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.253;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=-0.772;SB=0.00;SOR=1.179;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:388,0,208 1 74670172 rs12046751 A G 1527.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.421;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.61;ReadPosRankSum=1.023;SB=-9.610e+02;SOR=0.581;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:37,55:93:99:1556,0,854 1 74819077 rs6424586 T G 2799.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.82;SB=-1.787e+03;SOR=0.693;VQSLOD=5.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2828,202,0 1 74841173 rs2880795 A C 1760.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;SB=-4.010e+02;SOR=2.628;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1789,129,0 1 74929048 rs45524636 T G 351.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.378;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-0.406;SB=-3.500e+01;SOR=0.540;VQSLOD=9.76;culprit=FS GT:AD:DP:GQ:PL 0/1:13,11:24:99:380,0,443 1 74936374 rs596204 A G 245.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.984;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.506;HaplotypeScore=2.8790;MLEAC=1;MLEAF=0.500;MQ=59.52;MQ0=0;MQRankSum=0.739;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=7.02;ReadPosRankSum=0.818;SB=-7.400e+01;SOR=1.802;VQSLOD=0.259;culprit=QD GT:AD:DP:GQ:PL 0/1:24,11:35:99:274,0,748 1 74936454 rs491922 G C 631.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.383;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=6.523;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-2.086;SB=-1.150e+02;SOR=1.743;VQSLOD=5.81;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:31,22:53:99:660,0,813 1 74937749 rs3765674 A G 1596.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.030;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=1.431;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.398;SB=-1.080e+03;SOR=0.538;VQSLOD=9.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,63:126:99:1625,0,1588 1 74941210 rs648614 C T 1739.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.515;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=0.625;HaplotypeScore=6.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=-0.700;SB=-7.670e+02;SOR=0.865;VQSLOD=7.69;culprit=DP GT:AD:DP:GQ:PL 0/1:88,65:154:99:1768,0,2317 1 74941293 rs649058 G A 2248.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.536;DB;DP=217;Dels=0.00;ExcessHet=3.0103;FS=1.054;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=0.418;SB=-1.148e+03;SOR=0.784;VQSLOD=6.45;culprit=DP GT:AD:DP:GQ:PL 0/1:123,94:217:99:2277,0,3091 1 75006027 rs3895907 A G 590.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.378;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.314;SB=-2.530e+02;SOR=1.167;VQSLOD=7.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,23:38:99:619,0,437 1 75006076 rs3845348 G A 858.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.81;SB=-2.001e+02;SOR=2.753;VQSLOD=7.07;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,27:27:69:887,69,0 1 75036783 rs9326115 T C 3183.76 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.32;ReadPosRankSum=1.700;SB=-1.480e+03;SOR=0.458;VQSLOD=5.07;culprit=FS GT:AD:DP:GQ:PL 1/1:1,104:105:99:3212,210,0 1 75036812 rs9326116 C T 3474.77 PASS AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-2.140e+03;SOR=0.838;VQSLOD=5.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,116:116:99:3503,259,0 1 75042626 . TA T 117.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQ0=0;MQRankSum=2.360;QD=2.14;RPA=14,13;RU=A;ReadPosRankSum=2.552;SB=-4.200e+01;SOR=0.610;STR;VQSLOD=0.500;culprit=QD GT:AD:DP:GQ:PL 0/1:40,15:63:99:155,0,891 1 75055419 rs2305549 T C 1243.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.557;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=2.493;SB=-5.810e+02;SOR=0.762;VQSLOD=7.97;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:47,49:96:99:1272,0,1207 1 75072264 rs41289216 G T 135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.701;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.058;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.54;ReadPosRankSum=-0.951;SB=-5.700e+01;SOR=0.307;VQSLOD=8.82;culprit=QD GT:AD:DP:GQ:PL 0/1:11,7:18:99:164,0,324 1 75086412 rs41289218 G C 715.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.390;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=3.797;HaplotypeScore=8.3296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=1.073;SB=-2.290e+02;SOR=1.292;VQSLOD=6.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,27:61:99:744,0,846 1 75097426 rs11210490 G C 1143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.165;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.733;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=1.762;SB=-5.770e+02;SOR=0.590;VQSLOD=8.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:71,47:118:99:1172,0,1963 1 75108863 rs623171 A C 1355.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.76;SB=-2.471e+02;SOR=3.202;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1384,99,0 1 75175886 rs3819946 T C 1354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.734;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=3.441;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.689;SB=-8.420e+02;SOR=0.477;VQSLOD=9.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:57,57:114:99:1383,0,1476 1 75190452 rs1051122 C T 490.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.769;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.976;HaplotypeScore=3.4888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.44;ReadPosRankSum=-0.640;SB=-3.040e+02;SOR=0.936;VQSLOD=6.28;culprit=QD GT:AD:DP:GQ:PL 0/1:42,24:66:99:519,0,1179 1 75198922 rs77779046 G C 1740.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.901;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.779;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=-0.164;SB=-6.910e+02;SOR=0.880;VQSLOD=7.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,67:114:99:1769,0,1115 1 75199152 rs277373 C T 3257.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9284;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-1.301e+03;SOR=1.565;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3286,256,0 1 75199214 rs745108 G A 503.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.126;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.30;ReadPosRankSum=-0.303;SB=-1.360e+02;SOR=0.765;VQSLOD=7.57;culprit=QD GT:AD:DP:GQ:PL 0/1:47,22:69:99:532,0,1349 1 75199279 rs28563168 G A 222.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.398;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.19;ReadPosRankSum=-2.284;SB=-2.801e+01;SOR=0.746;VQSLOD=8.37;culprit=QD GT:AD:DP:GQ:PL 0/1:21,10:31:99:251,0,689 1 75199299 rs28568334 C G 112.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.13;ReadPosRankSum=0.943;SB=-9.732e-01;SOR=0.818;VQSLOD=8.75;culprit=QD GT:AD:DP:GQ:PL 0/1:17,5:22:99:141,0,594 1 75214441 rs1133891 A G 527.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=0.473;SB=-2.840e+02;SOR=0.706;VQSLOD=9.98;culprit=FS GT:AD:DP:GQ:PL 0/1:24,22:46:99:556,0,593 1 75603055 rs1526503 A G 2381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.19;SB=-1.112e+03;SOR=1.288;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2410,175,0 1 75603101 rs6695423 A G 224.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.844;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.94;ReadPosRankSum=-0.787;SB=-3.100e+01;SOR=0.892;VQSLOD=7.29;culprit=QD GT:AD:DP:GQ:PL 0/1:47,10:57:99:253,0,1261 1 75603207 rs6681258 G T 50.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.63;ReadPosRankSum=0.779;SB=-1.765e+00;SOR=0.425;VQSLOD=8.93;culprit=QD GT:AD:DP:GQ:PL 0/1:11,3:14:79:79,0,374 1 75609049 rs12041465 A C 432.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.421;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.64;ReadPosRankSum=-0.545;SB=0.00;SOR=1.022;VQSLOD=10.36;culprit=FS GT:AD:DP:GQ:PL 0/1:11,15:26:99:461,0,365 1 75626420 rs2462955 A T 683.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=-1.781e+02;SOR=2.303;VQSLOD=5.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:54:712,54,0 1 75669619 rs72407438 T TTTG 456.74 PASS AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.82;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;RPA=2,3;RU=TTG;SB=0.00;SOR=4.804;STR;VQSLOD=7.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:15:30:494,30,0 1 75672376 rs1948874 A G 879.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-1.432;SB=-4.160e+02;SOR=0.710;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:32,35:67:99:908,0,877 1 75679569 . C CTT 150.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQ0=0;MQRankSum=1.381;POSITIVE_TRAIN_SITE;QD=5.58;RPA=10,12;RU=T;ReadPosRankSum=0.678;SB=-1.807e+01;SOR=0.495;STR;VQSLOD=3.15;culprit=QD GT:AD:DP:GQ:PL 0/1:17,10:33:99:188,0,523 1 75680545 rs688513 T G 350.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=-1.134;SB=-8.097e+01;SOR=0.495;VQSLOD=8.61;culprit=FS GT:AD:DP:GQ:PL 0/1:4,13:17:77:379,0,77 1 75680565 rs688539 G A 176.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.68;ReadPosRankSum=0.105;SB=-3.976e+01;SOR=0.569;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:90:205,0,90 1 75681351 rs594470 A T 517.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=-0.105;SB=0.00;SOR=1.220;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:10,16:26:99:546,0,297 1 75681511 rs595009 T C 1649.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.401;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=1.462;HaplotypeScore=11.0292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.420;SB=-9.230e+02;SOR=0.966;VQSLOD=7.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,63:125:99:1678,0,1472 1 75685643 rs12042874 T C 349.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.257;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.188;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-0.381;SB=-4.276e+01;SOR=0.169;VQSLOD=10.30;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,12:25:99:378,0,426 1 75716925 rs588098 C T 3085.77 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.39;SB=-1.393e+03;SOR=1.458;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:105:99:3114,238,0 1 75740845 rs1144298 A G 298.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.815;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.64;ReadPosRankSum=0.304;SB=-6.400e+01;SOR=0.556;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:19,12:32:99:327,0,594 1 75823084 rs1249833 C T 646.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.04;SB=-7.997e+01;SOR=3.611;VQSLOD=7.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:51:675,51,0 1 75862526 rs1249813 C A 171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.18;ReadPosRankSum=0.000;SB=0.00;SOR=1.085;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:200,0,121 1 76047910 rs1831701 G A 640.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.86;SB=-3.000e+02;SOR=1.426;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:48:669,48,0 1 76107473 rs211715 C G 559.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=-3.630e+02;SOR=0.793;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:42:588,42,0 1 76194229 rs11316888 GT G 2175.73 PASS AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.00;RPA=4,3;RU=T;SB=-6.120e+02;SOR=2.093;STR;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:69:99:2213,193,0 1 76194306 rs1146572 A G 131.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=-0.775;SB=0.00;SOR=0.307;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 0/1:9,5:14:99:160,0,300 1 76234886 rs1146593 A G 449.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.560;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=1.135;SB=-1.630e+02;SOR=0.569;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:21,16:37:99:478,0,538 1 76253607 rs189490979 C T 259.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.125;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.02;ReadPosRankSum=0.698;SB=-1.490e+02;SOR=0.451;VQSLOD=9.25;culprit=QD GT:AD:DP:GQ:PL 0/1:26,11:37:99:288,0,688 1 76257074 . A AT 700.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;DP=78;ExcessHet=3.0103;FS=1.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;RPA=14,15;RU=T;ReadPosRankSum=-0.610;SB=-2.880e+02;SOR=0.895;STR;VQSLOD=7.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,38:78:99:738,0,385 1 76257892 rs12703 A T 1148.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=1.734;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=-0.988;SB=-5.350e+02;SOR=0.479;VQSLOD=9.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,45:98:99:1177,0,1424 1 76272837 rs3737574 A G 660.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.579;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=5.064;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=0.485;SB=-9.200e+01;SOR=1.646;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 0/1:29,22:51:99:689,0,737 1 76280543 rs1144339 A G 227.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.095;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=1.169;SB=-6.901e+01;SOR=0.892;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:5,10:15:99:256,0,124 1 76287973 . CA C 52.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQ0=0;MQRankSum=0.605;POSITIVE_TRAIN_SITE;QD=4.79;RPA=18,17;RU=A;ReadPosRankSum=0.349;SB=0.00;SOR=0.859;STR;VQSLOD=3.13;culprit=QD GT:AD:DP:GQ:PL 0/1:5,6:11:78:90,0,78 1 76313874 rs2047435 C T 434.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.437;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=0.254;SB=-1.630e+02;SOR=0.627;VQSLOD=10.41;culprit=FS GT:AD:DP:GQ:PL 0/1:12,18:30:99:463,0,325 1 76333172 rs3765682 T C 131.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.904;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=4.761;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.99;ReadPosRankSum=-0.035;SB=-9.600e+01;SOR=0.138;VQSLOD=9.17;culprit=QD GT:AD:DP:GQ:PL 0/1:15,7:22:99:160,0,425 1 76333352 rs5745437 G A 224.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.73;ReadPosRankSum=-0.487;SB=-3.401e+01;SOR=1.609;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:95:253,0,95 1 76344011 rs1493367 C A 1827.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.07;SB=-5.940e+02;SOR=1.961;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1856,141,0 1 76344705 rs5745448 T C 859.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.121;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-0.938;SB=-3.960e+02;SOR=0.646;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:29,34:63:99:888,0,747 1 76344711 rs5745449 A T 1986.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=-8.180e+02;SOR=1.681;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2015,147,0 1 76344856 rs5745451 T C 735.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.018;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=3.167;HaplotypeScore=2.4932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=0.079;SB=-2.450e+02;SOR=0.235;VQSLOD=10.26;culprit=SOR GT:AD:DP:GQ:PL 0/1:21,29:50:99:764,0,563 1 76344920 rs5745453 G A 664.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;SB=0.00;SOR=5.892;VQSLOD=8.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:693,54,0 1 76346832 rs5745465 T C 245.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.693;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=1.690;SB=0.00;SOR=0.512;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:10,8:18:99:274,0,331 1 76346920 rs67599421 C CAT 2783.73 PASS AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.61;SB=-8.570e+02;SOR=1.911;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:2821,148,0 1 76378359 . ATTTT A,ATT 1739.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.297;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.00;RPA=12,8,10;RU=T;ReadPosRankSum=0.598;SB=-4.790e+02;SOR=1.276;STR;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 1/2:1,18,39:63:99:1777,1114,1147,351,0,251 1 76387748 rs12567390 T A 597.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.739;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=6.190;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-0.146;SB=-2.150e+02;SOR=0.125;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:21,22:43:99:626,0,640 1 76397972 rs3795251 C T 759.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.662;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.120;HaplotypeScore=2.6732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=-0.385;SB=-3.800e+02;SOR=0.993;VQSLOD=7.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,29:60:99:788,0,866 1 76608491 rs289686 T C 198.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.36;ReadPosRankSum=0.327;SB=-1.010e+02;SOR=0.511;VQSLOD=9.30;culprit=QD GT:AD:DP:GQ:PL 0/1:17,10:27:99:227,0,430 1 76608507 rs172333 C G 261.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.93;ReadPosRankSum=0.267;SB=-1.000e+02;SOR=0.818;VQSLOD=8.38;culprit=QD GT:AD:DP:GQ:PL 0/1:22,11:34:99:290,0,612 1 76608508 rs71071986 CT C 176.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.382;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.20;RPA=11,10;RU=T;ReadPosRankSum=0.379;SB=-7.300e+01;SOR=0.593;STR;VQSLOD=9.01;culprit=QD GT:AD:DP:GQ:PL 0/1:22,12:34:99:214,0,519 1 76608532 rs597362 T G 315.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.374;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.10;ReadPosRankSum=-0.117;SB=-1.170e+02;SOR=1.190;VQSLOD=6.44;culprit=QD GT:AD:DP:GQ:PL 0/1:25,14:39:99:344,0,689 1 76608691 rs12064337 G T 501.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.621;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.622;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-0.353;SB=-1.730e+02;SOR=1.159;VQSLOD=7.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,21:47:99:530,0,723 1 76608777 rs184095 C T 255.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.568;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=0.492;SB=-6.600e+01;SOR=0.307;VQSLOD=10.20;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:284,0,308 1 76771475 rs10782610 G T 1911.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-4.460e+02;SOR=2.722;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1940,147,0 1 77093010 rs680442 C T 454.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=0.817;SB=0.00;SOR=0.458;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:20,15:35:99:483,0,691 1 77093011 rs587021 T G 478.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.472;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=1.075;SB=-1.766e+00;SOR=1.201;VQSLOD=9.89;culprit=FS GT:AD:DP:GQ:PL 0/1:21,15:36:99:507,0,691 1 77093180 rs1184626 C A 1326.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.979;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=-0.169;SB=-7.140e+02;SOR=0.792;VQSLOD=8.46;culprit=FS GT:AD:DP:GQ:PL 0/1:66,55:121:99:1355,0,1788 1 77094826 rs676269 A G 281.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.997;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-0.380;SB=0.00;SOR=0.527;VQSLOD=9.96;culprit=FS GT:AD:DP:GQ:PL 0/1:11,9:20:99:310,0,374 1 77165502 rs2764657 G T 367.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.27;SB=-1.603e+02;SOR=1.329;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:30:396,30,0 1 77165835 rs2619599 G C 1758.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.31;SB=-1.023e+03;SOR=1.071;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1787,126,0 1 77525743 rs148463410 C T 492.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.880;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=4.887;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=-0.292;SB=-1.910e+02;SOR=1.574;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 0/1:19,19:38:99:521,0,507 1 77558057 rs1048575 G C 710.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.85;SB=-1.673e+02;SOR=2.636;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:739,54,0 1 77627096 rs839825 G A 1657.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.54;SB=-4.180e+02;SOR=2.400;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1686,129,0 1 77632270 rs1721144 T C 497.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.92;SB=0.00;SOR=5.283;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:526,39,0 1 77634948 rs1779199 G A 1026.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.75;SB=-4.660e+02;SOR=1.609;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:75:1055,75,0 1 77635148 rs1779198 A G 281.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.963;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=0.810;SB=-3.500e+01;SOR=0.602;VQSLOD=10.14;culprit=FS GT:AD:DP:GQ:PL 0/1:11,10:21:99:310,0,317 1 77672215 . A AT 147.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.85;RPA=11,12;RU=T;ReadPosRankSum=2.120;SB=0.00;SOR=0.818;STR;VQSLOD=7.79;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,8:16:99:185,0,135 1 77685042 rs12723684 T C 1485.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.074;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=4.681;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-0.233;SB=-7.250e+02;SOR=1.139;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 0/1:54,57:113:99:1514,0,1323 1 77763071 rs1167207 A G 909.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.43;SB=-3.670e+02;SOR=1.911;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:72:938,72,0 1 77763542 rs1167206 G A 1828.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-8.690e+02;SOR=1.047;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1857,144,0 1 77876896 rs6703133 T C 979.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.154;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=0.376;SB=-1.740e+02;SOR=0.582;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 0/1:23,32:55:99:1008,0,614 1 78001881 rs10873948 T C 335.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=-4.276e+01;SOR=3.258;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:364,27,0 1 78024162 rs370004356 T TGG 340.74 PASS AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;RPA=8,10;RU=G;SB=0.00;SOR=4.977;STR;VQSLOD=7.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:378,30,0 1 78024284 rs6675743 T C 915.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5802;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-5.060e+02;SOR=0.826;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:31:69:944,69,0 1 78024345 rs71756472 C CTAT 1472.73 PASS AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.73;RPA=1,2;RU=TAT;SB=-6.120e+02;SOR=1.136;STR;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:29:75:1510,75,0 1 78031994 rs7552291 A G 533.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.91;SB=-3.876e+01;SOR=4.047;VQSLOD=7.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:562,42,0 1 78033981 rs145860524 AAAATG A 1344.73 PASS AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.73;RPA=2,1;RU=AAATG;SB=-5.790e+02;SOR=1.127;STR;VQSLOD=7.02;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,20:21:60:1382,60,0 1 78045369 rs1565852 G A 1056.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-2.361e+02;SOR=2.833;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:81:1085,81,0 1 78281002 rs11162386 T C 895.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.86;SB=-8.197e+01;SOR=4.548;VQSLOD=5.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:78:924,78,0 1 78383467 rs1749913 G A 323.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.38;SB=-7.497e+01;SOR=2.303;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:352,27,0 1 78392446 rs1166698 G A 835.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SB=-3.180e+02;SOR=1.609;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:63:864,63,0 1 78430689 . A AG 2405.73 PASS AC=2;AF=1.00;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.58;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.49;RPA=1,2;RU=G;SB=-9.410e+02;SOR=1.262;STR;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:56:99:2443,166,0 1 78478675 rs3790586 G A 1303.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SB=-2.401e+02;SOR=3.202;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1332,105,0 1 78481640 rs1039863 G A 1485.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-3.520e+02;SOR=2.833;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1514,117,0 1 78560583 rs565164 G A 828.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-7.697e+01;SOR=4.174;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:857,69,0 1 78578177 rs6666954 T C 4371.77 PASS AC=2;AF=1.00;AN=2;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.20;SB=-2.647e+03;SOR=1.031;VQSLOD=6.12;culprit=DP GT:AD:DP:GQ:PL 1/1:0,155:155:99:4400,310,0 1 78585086 rs540742 T C 1647.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.93;SB=-8.070e+02;SOR=1.217;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1676,123,0 1 78601465 . C CT 2498.73 PASS AC=2;AF=1.00;AN=2;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.06;RPA=8,9;RU=T;SB=-4.360e+02;SOR=3.206;STR;VQSLOD=1.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:105:99:2536,258,0 1 78958277 rs35978825 C T 238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.334;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=0.447;SB=-3.100e+01;SOR=1.071;VQSLOD=8.62;culprit=FS GT:AD:DP:GQ:PL 0/1:15,9:24:99:267,0,421 1 78963437 rs1322934 G A 453.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.076;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.210;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-1.657;SB=-1.900e+02;SOR=0.951;VQSLOD=7.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,20:45:99:482,0,704 1 79001920 rs12060353 T G 221.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.473;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.06;ReadPosRankSum=-0.904;SB=0.00;SOR=0.836;VQSLOD=10.38;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:250,0,160 1 79001994 rs3766332 A T 595.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.666;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=-1.435;SB=-2.901e+01;SOR=1.251;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:20,20:40:99:624,0,603 1 79093818 rs273259 A G 996.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.959;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=0.496;SB=-4.520e+02;SOR=0.556;VQSLOD=9.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,39:66:99:1025,0,732 1 79094593 rs273257 A G 1364.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-7.910e+02;SOR=0.892;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1393,99,0 1 79095339 rs273256 A C 782.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.788;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=-0.116;SB=-3.410e+02;SOR=0.357;VQSLOD=9.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,32:49:99:811,0,419 1 79095526 rs3820093 G A 1424.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.743;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.785;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-0.311;SB=-8.510e+02;SOR=0.793;VQSLOD=7.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,58:94:99:1453,0,902 1 79102726 rs1981071 C T 981.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.950;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.062;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=0.654;SB=-3.510e+02;SOR=0.559;VQSLOD=9.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,34:61:99:1010,0,693 1 79106899 rs273252 T C 768.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.222;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.641;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=0.814;SB=-1.980e+02;SOR=1.318;VQSLOD=7.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,27:54:99:797,0,671 1 79106967 rs11577394 C T 306.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=1.362;SB=-5.900e+01;SOR=0.904;VQSLOD=10.06;culprit=FS GT:AD:DP:GQ:PL 0/1:13,11:24:99:335,0,448 1 79216267 rs1780743 G C 107.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.70;ReadPosRankSum=0.188;SB=-9.300e+01;SOR=0.368;VQSLOD=9.14;culprit=QD GT:AD:DP:GQ:PL 0/1:8,6:14:99:136,0,210 1 79355596 rs1061728 A G 414.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.514;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=9.717;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=-0.439;SB=-2.657e-01;SOR=3.401;VQSLOD=5.07;culprit=FS GT:AD:DP:GQ:PL 0/1:16,13:29:99:443,0,408 1 79357360 rs2275902 G C 781.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.137;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=-0.896;SB=-3.950e+02;SOR=0.392;VQSLOD=9.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,27:50:99:810,0,659 1 79358743 . C CA 77.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;DP=24;ExcessHet=3.0103;FS=1.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.24;RPA=17,18;RU=A;ReadPosRankSum=1.144;SB=-4.800e+01;SOR=0.368;STR;VQSLOD=7.39;culprit=QD GT:AD:DP:GQ:PL 0/1:14,10:24:99:115,0,204 1 79383300 rs5775467 CA C 412.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;DB;DP=36;ExcessHet=3.0103;FS=3.234;MLEAC=1;MLEAF=0.500;MQ=60.30;MQ0=0;MQRankSum=1.388;POSITIVE_TRAIN_SITE;QD=11.46;RPA=2,1;RU=A;ReadPosRankSum=0.115;SB=-1.900e+02;SOR=0.293;STR;VQSLOD=0.027;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,13:36:99:450,0,903 1 79383458 rs12569007 A T 373.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.913;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=8.862;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.31;ReadPosRankSum=0.199;SB=-1.460e+02;SOR=1.219;VQSLOD=5.60;culprit=QD GT:AD:DP:GQ:PL 0/1:28,17:46:99:402,0,816 1 79387242 rs3811440 C T 1341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.380;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-0.539;SB=-3.120e+02;SOR=0.670;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:40,53:93:99:1370,0,1093 1 79392756 rs12754818 C A 745.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.145;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=0.338;SB=-2.990e+02;SOR=0.793;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:25,30:55:99:774,0,662 1 79392821 rs17412855 A G 341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.785;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=-0.463;SB=-6.701e+01;SOR=0.317;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:12,12:24:99:370,0,380 1 79403751 rs985277 T G 1153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=0.724;SB=-6.810e+02;SOR=0.780;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:36,46:82:99:1182,0,979 1 79411888 rs723898 T C 368.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.405;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.05;ReadPosRankSum=0.455;SB=0.00;SOR=1.609;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:5,11:16:99:397,0,136 1 79472141 rs1571992 C A 418.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.058;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=6.406;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=0.222;SB=-3.060e+02;SOR=0.207;VQSLOD=8.12;culprit=FS GT:AD:DP:GQ:PL 0/1:26,20:46:99:447,0,697 1 80961879 rs1966551 A C 224.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.621;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.017;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-0.451;SB=-1.430e+02;SOR=0.243;VQSLOD=10.20;culprit=SOR GT:AD:DP:GQ:PL 0/1:9,10:19:99:253,0,272 1 82302600 rs12064537 T C 545.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.182;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.360;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-0.829;SB=-2.100e+02;SOR=0.446;VQSLOD=9.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,19:39:99:574,0,563 1 82415814 rs9438715 T C 901.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.40;SB=-1.761e+02;SOR=2.753;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:69:930,69,0 1 82416220 rs2148630 G A 648.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-1.463e+02;SOR=2.636;VQSLOD=7.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:51:677,51,0 1 82417552 rs7413275 T G 1095.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.71;SB=0.00;SOR=6.804;VQSLOD=7.34;culprit=DP GT:AD:DP:GQ:PL 1/1:0,29:29:84:1124,84,0 1 82421596 rs11163397 C T 2529.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=-1.054e+03;SOR=1.582;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2558,184,0 1 82437670 rs144957268 ATTTGT A 575.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;DB;DP=19;ExcessHet=3.0103;FS=6.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=0.047;SB=-9.732e-01;SOR=2.964;VQSLOD=5.76;culprit=FS GT:AD:DP:GQ:PL 0/1:8,9:19:99:613,0,566 1 82437682 . G A 277.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.34;ReadPosRankSum=-0.281;SB=-1.765e+00;SOR=2.964;VQSLOD=4.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,9:17:99:306,0,189 1 82450194 rs1154816 C A 695.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.509;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=0.551;SB=-1.640e+02;SOR=0.397;VQSLOD=10.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,26:49:99:724,0,663 1 82450758 rs3790872 C T 139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.230;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.22;ReadPosRankSum=0.352;SB=-2.402e+01;SOR=0.593;VQSLOD=9.49;culprit=QD GT:AD:DP:GQ:PL 0/1:11,6:17:99:168,0,287 1 82450844 rs1409765 C G 363.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.430;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=0.072;SB=-9.100e+01;SOR=1.130;VQSLOD=6.88;culprit=QD GT:AD:DP:GQ:PL 0/1:27,13:40:99:392,0,773 1 84365788 rs17534299 C A 243.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=1.027;SB=-6.200e+01;SOR=0.941;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:15,10:25:99:272,0,393 1 84394792 rs12094835 G A 615.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.122;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.937;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.92;ReadPosRankSum=-0.547;SB=-3.360e+02;SOR=0.573;VQSLOD=8.99;culprit=QD GT:AD:DP:GQ:PL 0/1:40,29:69:99:644,0,1084 1 84630885 rs2642182 G A 126.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=1.434;SB=0.00;SOR=0.551;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:155,0,209 1 84640691 rs582201 T G 845.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.16;SB=-4.700e+02;SOR=1.071;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:63:874,63,0 1 84641304 rs2812001 A C 394.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.22;ReadPosRankSum=-0.949;SB=0.00;SOR=1.739;VQSLOD=8.93;culprit=FS GT:AD:DP:GQ:PL 0/1:5,12:17:99:423,0,148 1 84641416 rs369090921 CT C 748.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.816;DB;DP=70;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.01;RPA=10,9;RU=T;ReadPosRankSum=0.524;SB=-3.740e+02;SOR=0.368;STR;VQSLOD=8.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,37:70:99:786,0,716 1 84701251 rs600674 T C 503.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.543;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=1.492;SB=-1.320e+02;SOR=0.544;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:18,20:38:99:532,0,501 1 84765340 rs72030782 G GTATATA,GTATA 1015.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;RPA=9,12,11;RU=TA;SB=-1.060e+02;SOR=3.258;STR;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/2:0,7,9:28:99:1053,342,299,308,0,256 1 84791374 rs55638637 C T 399.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=8.905;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=-0.991;SB=-1.280e+02;SOR=1.357;VQSLOD=5.55;culprit=FS GT:AD:DP:GQ:PL 0/1:29,15:44:99:428,0,656 1 84810815 rs315527 A G 907.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.192;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.853;HaplotypeScore=3.9568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=-1.088;SB=-4.570e+02;SOR=0.577;VQSLOD=9.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,36:80:99:936,0,1217 1 84815468 rs17131617 T C 609.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.470;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.824;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=-0.501;SB=-2.850e+02;SOR=0.243;VQSLOD=10.10;culprit=FS GT:AD:DP:GQ:PL 0/1:21,24:45:99:638,0,665 1 84853957 rs665074 A T 982.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-4.720e+02;SOR=1.352;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:75:1011,75,0 1 84864256 rs3738573 G C 572.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.445;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.30;ReadPosRankSum=0.180;SB=-4.120e+02;SOR=0.650;VQSLOD=9.09;culprit=QD GT:AD:DP:GQ:PL 0/1:43,26:69:99:601,0,1176 1 84867610 rs3754274 G A 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.572;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.183;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.54;ReadPosRankSum=-0.071;SB=-1.905e+01;SOR=1.688;VQSLOD=5.93;culprit=QD GT:AD:DP:GQ:PL 0/1:20,9:29:99:247,0,571 1 84873835 rs1981254 A G 1014.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.71;SB=-3.700e+02;SOR=1.911;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:75:1043,75,0 1 84874242 rs3116406 C G 2424.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-7.290e+02;SOR=2.242;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2453,178,0 1 84876711 rs67734584 C CA 2670.73 PASS AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.44;SB=-3.280e+02;SOR=3.729;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:58:99:2708,172,0 1 84876731 rs1506700 T G 1372.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.32;SB=-1.673e+02;SOR=4.021;VQSLOD=7.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1401,108,0 1 84878380 rs3116423 A G 470.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-1.483e+02;SOR=1.911;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:499,36,0 1 84880380 rs3768250 T C 2623.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-1.229e+03;SOR=1.192;VQSLOD=7.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2652,196,0 1 84944989 rs2292191 A G 632.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.992;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.055;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=-0.883;SB=-3.510e+02;SOR=0.409;VQSLOD=8.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,25:50:99:661,0,764 1 84946745 rs7413066 C T 506.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=-4.276e+01;SOR=4.174;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:535,42,0 1 84963000 rs1246159 A G 146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=0.313;SB=0.00;SOR=0.473;VQSLOD=10.24;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:175,0,256 1 84982259 rs2794218 T C 363.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.482;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=5.902;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=-0.387;SB=-1.633e+02;SOR=0.069;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:8,15:23:99:392,0,226 1 84986213 rs5775789 AT A 477.73 PASS AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.14;RPA=10,9;RU=T;SB=-2.977e+01;SOR=4.514;STR;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:515,57,0 1 84991488 rs2292808 T G 577.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.403;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.512;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=-0.349;SB=-1.380e+02;SOR=1.157;VQSLOD=7.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,19:36:99:606,0,444 1 84998445 rs6690204 C G 170.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.337;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.256;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-0.249;SB=-9.732e-01;SOR=2.303;VQSLOD=6.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,6:14:99:199,0,245 1 84999571 rs10874451 T C 369.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.955;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.46;ReadPosRankSum=-0.165;SB=0.00;SOR=1.022;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:19:99:398,0,210 1 85009894 rs12143652 A G 1270.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.385;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.766;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=0.208;SB=-8.170e+02;SOR=0.602;VQSLOD=9.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,49:94:99:1299,0,1105 1 85016177 rs1400777 A G 398.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.075;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.25;ReadPosRankSum=-0.761;SB=-2.800e+02;SOR=0.512;VQSLOD=8.84;culprit=QD GT:AD:DP:GQ:PL 0/1:35,20:56:99:427,0,1016 1 85029077 rs15911 C T 570.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.715;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=1.411;SB=-2.820e+02;SOR=0.840;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:28,23:51:99:599,0,772 1 85031630 rs2994953 G A 1986.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.936;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=1.353;HaplotypeScore=6.2494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.985;SB=-1.083e+03;SOR=0.873;VQSLOD=7.88;culprit=DP GT:AD:DP:GQ:PL 0/1:64,75:139:99:2015,0,1709 1 85036239 rs2303306 C G 1066.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.545;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=1.673;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=-0.206;SB=-5.280e+02;SOR=0.942;VQSLOD=7.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,41:99:99:1095,0,1459 1 85039828 rs41299545 G A 924.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.270;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=7.152;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-0.701;SB=-3.330e+02;SOR=1.269;VQSLOD=5.31;culprit=FS GT:AD:DP:GQ:PL 0/1:50,35:85:99:953,0,1290 1 85039955 rs2303307 G A 739.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.998;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.209;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=1.019;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=0.036;SB=-2.720e+02;SOR=0.437;VQSLOD=0.631;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,27:54:99:768,0,775 1 85039998 rs142534762 CGCAGCGCCA C 1077.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQ0=0;MQRankSum=0.912;QD=19.96;RPA=3,2;RU=GCAGCGCCA;ReadPosRankSum=0.091;SB=-1.080e+02;SOR=1.244;STR;VQSLOD=2.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,11:28:99:1115,0,749 1 85096592 rs11164027 C T 1406.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.560;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=3.019;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=-0.907;SB=-5.480e+02;SOR=0.386;VQSLOD=9.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,51:95:99:1435,0,1341 1 85096920 rs6695249 A G 477.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.545;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.703;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-0.720;SB=-1.780e+02;SOR=0.368;VQSLOD=10.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,20:33:99:506,0,404 1 85097247 rs12031476 T G 797.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.905;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.767;HaplotypeScore=4.7763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-0.318;SB=-1.640e+02;SOR=1.308;VQSLOD=7.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,28:72:99:826,0,1134 1 85097279 . A C 986.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.548;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.902;HaplotypeScore=4.7443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-0.366;SB=-2.810e+02;SOR=1.044;VQSLOD=5.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,38:97:99:1015,0,1605 1 85113203 . T C 1810.77 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.29;SB=-9.940e+02;SOR=1.044;VQSLOD=4.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:1839,132,0 1 85113229 rs1057746 A G 633.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=1.084;SB=-3.120e+02;SOR=0.639;VQSLOD=7.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,25:62:99:662,0,946 1 85121255 rs4537578 A G 565.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.471;SB=-2.410e+02;SOR=0.576;VQSLOD=9.88;culprit=FS GT:AD:DP:GQ:PL 0/1:23,21:44:99:594,0,605 1 85123981 . T C 998.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.961;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.27;ReadPosRankSum=-1.614;SB=-4.710e+02;SOR=0.476;VQSLOD=8.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,39:70:99:1027,0,831 1 85128262 rs2911563 A G 802.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.710;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-1.003;SB=-2.220e+02;SOR=0.321;VQSLOD=9.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,31:61:99:831,0,884 1 85128280 rs2994437 T C 1653.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.45;SB=-2.850e+02;SOR=3.352;VQSLOD=5.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1682,123,0 1 85128305 rs11164033 G C 384.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.829;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=2.176;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-0.104;SB=-2.901e+01;SOR=1.609;VQSLOD=5.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,14:30:99:413,0,471 1 85331808 rs67410957 G GAGA 1163.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.09;RPA=1,2;RU=AGA;ReadPosRankSum=-2.408;SB=-3.370e+02;SOR=0.504;STR;VQSLOD=6.49;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:18,22:45:99:1201,0,934 1 85392324 rs6681025 C T 835.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.859;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=3.959;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.44;ReadPosRankSum=-0.394;SB=-4.580e+02;SOR=0.835;VQSLOD=5.84;culprit=QD GT:AD:DP:GQ:PL 0/1:65,34:99:99:864,0,1606 1 85417779 rs679961 G A 560.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=0.00;SOR=5.549;VQSLOD=9.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:589,45,0 1 85418307 rs677476 C G 1342.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.43;SB=-1.543e+02;SOR=3.967;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1371,105,0 1 85422061 rs632545 C T 3840.77 PASS AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-2.291e+03;SOR=0.840;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,129:129:99:3869,283,0 1 85462582 rs11161503 C G 429.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.438;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=-0.415;SB=-1.020e+02;SOR=0.874;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:13,15:28:99:458,0,349 1 85462652 rs11161504 G T 117.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=1.434;SB=0.00;SOR=0.551;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:146,0,212 1 85462665 rs11161505 T G 96.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=2.450;SB=0.00;SOR=0.412;VQSLOD=8.76;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:6,4:10:99:125,0,195 1 85488154 rs2039814 G C 237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.149;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=5.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=-0.239;SB=-5.150e-01;SOR=2.303;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 0/1:14,8:22:99:266,0,415 1 85498318 rs17371429 A T 585.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.257;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.663;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.291;SB=-5.900e+01;SOR=1.316;VQSLOD=7.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,20:47:99:614,0,774 1 85559118 rs11304107 CT C 517.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;DB;DP=42;ExcessHet=3.0103;FS=6.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;RPA=7,6;RU=T;ReadPosRankSum=-1.196;SB=-1.291e+02;SOR=0.117;STR;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:18,23:42:99:555,0,433 1 85559452 rs709762 A G 649.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.080;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-0.321;SB=-2.810e+02;SOR=0.706;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:23,26:49:99:678,0,626 1 85560313 rs709765 T C 152.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=-0.573;SB=-3.501e+01;SOR=0.368;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:9,6:15:99:181,0,281 1 85561546 rs709766 T C 800.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.252;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=3.542;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=-0.670;SB=-6.100e+01;SOR=1.493;VQSLOD=7.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,27:59:99:829,0,916 1 85564138 rs817489 A G 189.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.754;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.04;ReadPosRankSum=0.896;SB=-1.765e+00;SOR=0.836;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:14,7:21:99:218,0,447 1 85573705 rs67279104 A AC 402.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;DB;DP=23;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=60.47;MQ0=0;MQRankSum=1.132;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=-0.246;SB=-8.900e+01;SOR=0.269;VQSLOD=0.498;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,11:23:99:440,0,360 1 85589939 rs11356964 GT G 3613.73 PASS AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;RPA=2,1;RU=T;SB=-1.524e+03;SOR=1.112;STR;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:85:99:3651,250,0 1 85592126 rs817474 G T 405.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;SB=-4.076e+01;SOR=3.611;VQSLOD=7.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:434,33,0 1 85594466 rs709783 G A 534.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=7.563;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=0.266;SB=-2.350e+02;SOR=1.633;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 0/1:14,23:37:99:563,0,391 1 85595645 rs1020770 C T 480.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.350;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.824;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=-0.024;SB=-1.450e+02;SOR=1.375;VQSLOD=7.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,19:44:99:509,0,655 1 85598527 rs5775826 TC T 1979.73 PASS AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.13;RPA=8,7;RU=C;SB=-2.520e+02;SOR=3.767;STR;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:2017,175,0 1 85598725 rs371228877 T C 1603.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.488;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.09;MQ0=0;MQRankSum=-1.045;QD=13.95;ReadPosRankSum=0.818;SB=-8.040e+02;SOR=0.668;VQSLOD=0.521;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,61:116:99:1632,0,1501 1 85599563 rs817478 A C 1052.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.017;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.855;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=0.428;SB=-5.320e+02;SOR=0.907;VQSLOD=7.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,40:80:99:1081,0,980 1 85624549 rs709786 C T 3166.77 PASS AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.9323;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.02;SB=-1.667e+03;SOR=1.230;VQSLOD=5.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,113:113:99:3195,235,0 1 85624864 rs817412 G A 2037.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-1.124e+03;SOR=1.022;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2066,150,0 1 85634628 . G C 426.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.78;ReadPosRankSum=-1.710;SB=0.00;SOR=0.859;VQSLOD=8.39;culprit=FS GT:AD:DP:GQ:PL 0/1:11,13:24:99:455,0,373 1 85647713 rs817444 T C 1013.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-5.050e+02;SOR=1.244;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:75:1042,75,0 1 85648620 rs817443 C T 2909.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-1.588e+03;SOR=0.883;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2938,220,0 1 85648905 rs11161539 T C 856.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.67;SB=-1.135e+02;SOR=3.442;VQSLOD=6.59;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,24:24:66:885,66,0 1 85723318 rs17382844 A G 1092.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.52;SB=-8.097e+01;SOR=4.548;VQSLOD=2.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:84:1121,84,0 1 85741921 rs2735594 G C 927.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-5.750e+02;SOR=0.760;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:69:956,69,0 1 85787114 rs233116 A T 1381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;SB=-4.390e+02;SOR=1.931;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1410,102,0 1 85787118 rs3087894 G C 553.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.671;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.278;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-0.085;SB=-2.200e+02;SOR=0.399;VQSLOD=9.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,22:47:99:582,0,635 1 85787323 rs1498375 T A 599.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.803;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.681;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=-1.687;SB=-1.370e+02;SOR=0.411;VQSLOD=9.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,22:39:99:628,0,501 1 85787334 rs1498374 C T 460.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.018;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=-1.153;SB=-6.700e+01;SOR=0.409;VQSLOD=10.28;culprit=FS GT:AD:DP:GQ:PL 0/1:15,17:32:99:489,0,490 1 85790633 rs1498373 G A 1012.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.953;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=1.129;HaplotypeScore=4.3148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-0.981;SB=-1.100e+02;SOR=0.937;VQSLOD=8.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,36:75:99:1041,0,1097 1 85816134 rs2230820 T C 1139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=1.647;HaplotypeScore=3.5365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-1.182;SB=-5.530e+02;SOR=0.892;VQSLOD=7.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,42:97:99:1168,0,1265 1 85817269 rs376771526 T C 1635.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.609;DB;DP=183;Dels=0.00;ExcessHet=3.0103;FS=0.582;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.94;ReadPosRankSum=0.195;SB=-8.490e+02;SOR=0.619;VQSLOD=5.17;culprit=DP GT:AD:DP:GQ:PL 0/1:115,68:183:99:1664,0,3065 1 85817295 rs2076699 G A 1361.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.559;DB;DP=160;Dels=0.00;ExcessHet=3.0103;FS=0.654;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.51;ReadPosRankSum=0.625;SB=-5.110e+02;SOR=0.778;VQSLOD=7.76;culprit=QD GT:AD:DP:GQ:PL 0/1:102,58:160:99:1390,0,2951 1 85930272 rs4001153 GAC G 1015.73 PASS AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.21;RPA=11,10;RU=AC;SB=-3.740e+02;SOR=1.528;STR;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:36:81:1053,81,0 1 86046561 rs2297140 C A 316.78 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.000;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.63;ReadPosRankSum=-1.493;SB=-3.477e+01;SOR=2.448;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:1,13:14:27:345,27,0 1 86046924 rs2297141 G A 779.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-7.497e+01;SOR=3.258;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:808,60,0 1 86142979 . C T 1277.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;DP=83;Dels=0.00;ExcessHet=3.0103;FS=1.852;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.39;ReadPosRankSum=-0.468;SB=-7.320e+02;SOR=0.645;VQSLOD=6.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,49:83:99:1306,0,900 1 86146672 rs3767162 G A 1367.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-1.155e+02;SOR=4.294;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:99:1396,105,0 1 86167957 rs1764298 C T 647.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.44;SB=-3.050e+02;SOR=1.329;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:51:676,51,0 1 86201744 rs76710587 C T 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=-1.400;SB=-6.900e+01;SOR=0.473;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:202,0,177 1 86202016 rs1481200 C T 3743.77 PASS AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6778;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=-1.832e+03;SOR=1.234;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,126:127:99:3772,283,0 1 86202102 rs12037785 C A 1789.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.978;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-0.251;SB=-1.129e+03;SOR=0.651;VQSLOD=7.76;culprit=FS GT:AD:DP:GQ:PL 0/1:80,72:152:99:1818,0,2023 1 86210241 . G GT 295.74 PASS AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;RPA=4,5;RU=T;SB=0.00;SOR=4.804;STR;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:333,30,0 1 86210546 rs7547023 G A 779.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=-1.543e+02;SOR=3.180;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:63:808,63,0 1 86211325 rs10747324 G A 953.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;SB=-1.941e+02;SOR=2.910;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:982,72,0 1 86246849 rs313722 A C 1560.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.38;SB=-6.320e+02;SOR=1.739;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1589,114,0 1 86249063 rs313724 C T 850.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.72;SB=-1.961e+02;SOR=2.670;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:66:879,66,0 1 86249735 rs41371348 A C 261.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.70;ReadPosRankSum=-0.064;SB=-4.376e+01;SOR=0.446;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:290,0,147 1 86249911 rs313725 A G 3416.77 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.06;SB=-1.737e+03;SOR=1.220;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,110:110:99:3445,247,0 1 86252025 rs12746325 A G 441.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.395;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=1.485;SB=-3.280e+02;SOR=0.622;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:25,20:45:99:470,0,623 1 86252353 rs12128605 C T 97.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.139;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=0.000;SB=-3.377e+01;SOR=0.120;VQSLOD=9.25;culprit=QD GT:AD:DP:GQ:PL 0/1:6,5:11:99:126,0,210 1 86313536 rs1962482 G T 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.455;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=0.621;SB=-1.765e+00;SOR=1.863;VQSLOD=8.26;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:202,0,171 1 86340262 rs12136023 C A 422.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=0.374;SB=-1.340e+02;SOR=0.998;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:15,15:30:99:451,0,383 1 86340523 rs1564518 T C 140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-0.233;SB=0.00;SOR=0.446;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:169,0,243 1 86340524 rs1564517 G A 126.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.000;SB=0.00;SOR=0.551;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:12:99:155,0,213 1 86340880 rs1564515 A G 95.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.248;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.128;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.79;ReadPosRankSum=0.437;SB=-2.004e+01;SOR=1.402;VQSLOD=4.81;culprit=QD GT:AD:DP:GQ:PL 0/1:15,5:20:99:124,0,365 1 86341153 rs12122234 G A 251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.98;ReadPosRankSum=0.259;SB=-7.100e+01;SOR=1.426;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 0/1:3,9:12:56:280,0,56 1 86355212 rs76666601 C A 505.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.112;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=5.100;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=1.379;SB=-8.000e+01;SOR=1.609;VQSLOD=6.05;culprit=FS GT:AD:DP:GQ:PL 0/1:25,18:43:99:534,0,621 1 86361384 rs4912449 C T 528.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.51;SB=0.00;SOR=5.549;VQSLOD=8.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:557,45,0 1 86361802 rs7541806 C G 613.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.524;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.54;ReadPosRankSum=0.775;SB=-2.560e+02;SOR=0.330;VQSLOD=9.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,21:35:99:642,0,433 1 86372839 . T TG 702.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;RPA=7,8;RU=G;ReadPosRankSum=-0.642;SB=-3.000e+02;SOR=0.663;STR;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:28,25:53:99:740,0,790 1 86375654 rs1502657 C G 520.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.27;ReadPosRankSum=-0.430;SB=-2.780e+02;SOR=0.681;VQSLOD=8.72;culprit=QD GT:AD:DP:GQ:PL 0/1:42,21:63:99:549,0,1088 1 86377028 rs10493777 C T 235.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.181;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.20;ReadPosRankSum=1.005;SB=-1.130e+02;SOR=0.693;VQSLOD=9.26;culprit=QD GT:AD:DP:GQ:PL 0/1:26,12:38:99:264,0,639 1 86435850 rs7538391 T C 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.086;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=2.016;SB=-8.400e+01;SOR=0.927;VQSLOD=8.70;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:22,14:36:99:375,0,590 1 86453237 rs11799965 T G 384.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.278;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.85;ReadPosRankSum=-1.712;SB=-1.510e+02;SOR=0.859;VQSLOD=9.04;culprit=QD GT:AD:DP:GQ:PL 0/1:31,18:49:99:413,0,825 1 86487914 rs11161721 C A 654.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.404;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=5.764;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=0.898;SB=-3.240e+02;SOR=0.697;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 0/1:23,25:48:99:683,0,677 1 86487981 rs516213 G A 516.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.285;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=4.716;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-1.638;SB=-1.210e+02;SOR=1.532;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 0/1:22,20:42:99:545,0,649 1 86487992 rs35501628 A AACAG 773.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;DB;DP=42;ExcessHet=3.0103;FS=5.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.12;RPA=1,2;RU=ACAG;ReadPosRankSum=0.379;SB=-1.710e+02;SOR=1.735;STR;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 0/1:23,13:42:99:811,0,1466 1 86497579 rs187962051 C T 156.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.695;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.783;HaplotypeScore=1.9984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.03;ReadPosRankSum=-0.863;SB=-1.170e+02;SOR=0.577;VQSLOD=4.58;culprit=QD GT:AD:DP:GQ:PL 0/1:17,9:26:99:185,0,497 1 86512536 rs60891279 C T 1735.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-1.094e+03;SOR=0.693;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1764,129,0 1 86524999 . C T 193.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.891;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.84;ReadPosRankSum=1.065;SB=0.00;SOR=0.693;VQSLOD=8.21;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:222,0,200 1 86557967 rs11161732 G A 1422.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-6.890e+02;SOR=1.154;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1451,108,0 1 86590788 . C A 762.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.961;DP=96;Dels=0.00;ExcessHet=3.0103;FS=2.954;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.95;ReadPosRankSum=-0.933;SB=-2.720e+02;SOR=1.038;VQSLOD=5.10;culprit=QD GT:AD:DP:GQ:PL 0/1:65,31:96:99:791,0,1766 1 86590915 rs2174767 G A 3052.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-1.404e+03;SOR=1.225;VQSLOD=7.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:3081,232,0 1 86591837 rs11161747 G A 3230.05 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.36;SB=-1.540e+03;SOR=1.386;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,110:110:99:3259,247,0 1 86621992 rs1999747 C A 1614.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-4.380e+02;SOR=2.215;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1643,123,0 1 86807618 rs272489 C T 263.80 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.98;SB=-1.831e+02;SOR=0.859;VQSLOD=5.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:21:292,21,0 1 86820267 rs1182098 C T 1725.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.25;SB=-1.111e+03;SOR=0.726;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1754,129,0 1 86838158 rs421105 C T 758.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.10;SB=-4.070e+02;SOR=0.997;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:57:787,57,0 1 86847955 rs272516 G A 376.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.173;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.84;ReadPosRankSum=1.898;SB=-1.480e+02;SOR=0.430;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:6,14:20:99:405,0,140 1 86848910 rs184974286 G A 195.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=-0.651;SB=-5.601e+01;SOR=0.859;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:97:224,0,97 1 86852621 rs2390096 A G 1546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.229;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=5.723;HaplotypeScore=1.7860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-1.937;SB=-7.120e+02;SOR=1.211;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 0/1:60,61:121:99:1575,0,1436 1 86891005 rs1158506 C A 287.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.060;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.93;ReadPosRankSum=0.503;SB=-1.360e+02;SOR=0.250;VQSLOD=9.51;culprit=SOR GT:AD:DP:GQ:PL 0/1:6,11:17:99:316,0,120 1 86891179 rs2210641 T C 268.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.893;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=-0.244;SB=-6.400e+01;SOR=0.551;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:7,10:17:99:297,0,194 1 86894371 rs1334147 G T 360.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=5.040;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.59;ReadPosRankSum=1.963;SB=-3.600e+01;SOR=1.609;VQSLOD=5.26;culprit=QD GT:AD:DP:GQ:PL 0/1:28,14:42:99:389,0,708 1 86896354 rs4292929 G A 153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.273;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=-0.109;SB=0.00;SOR=0.340;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:10,6:16:99:182,0,314 1 86896541 rs3737672 G A 1035.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=2.637;HaplotypeScore=2.8186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-0.713;SB=-6.340e+02;SOR=0.547;VQSLOD=9.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,45:97:99:1064,0,1342 1 86897973 rs1334150 T C 285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=-1.691;SB=0.00;SOR=1.609;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 0/1:4,9:13:99:314,0,116 1 86898315 rs3737159 T C 446.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.108;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.31;ReadPosRankSum=2.185;SB=0.00;SOR=0.473;VQSLOD=8.55;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:8,14:22:99:475,0,249 1 86913265 rs2275001 C T 1219.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.505;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=2.9953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=1.559;SB=-6.410e+02;SOR=0.514;VQSLOD=9.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,48:97:99:1248,0,1333 1 86920904 rs2390057 A G 1502.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.046;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.673;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-1.344;SB=-9.560e+02;SOR=0.610;VQSLOD=9.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,58:121:99:1531,0,1509 1 86939130 rs2145412 C T 2544.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.25;SB=-1.359e+03;SOR=0.917;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:88:99:2573,196,0 1 86939390 rs2180762 G A 2607.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=-1.136e+03;SOR=1.556;VQSLOD=5.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2636,193,0 1 86952324 rs2734705 A G 2384.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.44;SB=-1.482e+03;SOR=0.821;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2413,172,0 1 86952601 rs2075630 A G 434.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=0.00;SOR=5.136;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:463,36,0 1 86959014 rs2753346 T C 374.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.06;SB=0.00;SOR=4.804;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:403,30,0 1 86959173 rs2791494 T C 2578.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-1.234e+03;SOR=1.192;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2607,190,0 1 86959424 rs1321690 C A 430.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.11;SB=-3.976e+01;SOR=3.611;VQSLOD=7.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:459,36,0 1 86959796 rs1321689 C T 1870.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-4.750e+02;SOR=2.468;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1899,138,0 1 86964131 rs11302985 CT C 465.73 PASS AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.61;SB=0.00;SOR=4.977;VQSLOD=7.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:503,33,0 1 86965419 rs1882753 T C 578.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.955;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=2.035;SB=-2.130e+02;SOR=0.752;VQSLOD=9.55;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:24,22:46:99:607,0,608 1 87018768 rs6676936 A G 2039.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=-1.018e+03;SOR=1.352;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2068,157,0 1 87025819 rs2231582 T C 523.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.404;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.378;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=-1.398;SB=-2.100e+02;SOR=0.439;VQSLOD=9.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,18:37:99:552,0,548 1 87036746 rs772599 C A 4359.77 PASS AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;SB=-2.164e+03;SOR=1.360;VQSLOD=5.67;culprit=DP GT:AD:DP:GQ:PL 1/1:0,152:154:99:4388,322,0 1 87036946 rs2231595 C T 1240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.951;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=8.333;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.54;ReadPosRankSum=1.526;SB=-4.810e+02;SOR=0.148;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 0/1:26,49:75:99:1269,0,668 1 87045896 rs4001061 TCCTACA T 5927.73 PASS AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-2.539e+03;SOR=0.927;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:5965,223,0 1 87101245 rs2292831 A G 468.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.079;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=0.932;SB=-1.040e+02;SOR=0.569;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:18,16:34:99:497,0,448 1 87101375 rs2292830 C G 686.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.080;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=1.494;SB=-3.260e+02;SOR=0.882;VQSLOD=8.62;culprit=FS GT:AD:DP:GQ:PL 0/1:36,27:63:99:715,0,919 1 87200729 rs263483 C G 1415.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.251;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=1.402;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=-1.175;SB=-6.620e+02;SOR=0.841;VQSLOD=7.45;culprit=DP GT:AD:DP:GQ:PL 0/1:83,57:140:99:1444,0,2108 1 87458695 rs10873810 G A 2858.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-1.290e+03;SOR=1.585;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:2887,217,0 1 87511177 rs4656138 C T 3482.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.894;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.82;ReadPosRankSum=0.000;SB=-1.832e+03;SOR=0.387;VQSLOD=8.35;culprit=FS GT:AD:DP:GQ:PL 1/1:1,112:113:99:3511,256,0 1 87511398 rs7534656 C T 903.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.80;SB=-3.840e+02;SOR=1.051;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:72:932,72,0 1 87538182 rs34124612 TTG T 1804.73 PASS AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.54;RPA=3,2;RU=TG;SB=-7.470e+02;SOR=1.127;STR;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:44:99:1842,126,0 1 87538200 rs10782592 G A 1338.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=-8.240e+02;SOR=0.829;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1367,99,0 1 87549858 rs2798675 A G 803.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.49;SB=-2.341e+02;SOR=2.124;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:832,60,0 1 87563668 rs1199677 G A 1404.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;SB=-3.230e+02;SOR=2.584;VQSLOD=7.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1433,111,0 1 87570398 rs1621247 G A 2166.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.86;SB=-4.160e+02;SOR=3.056;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2195,163,0 1 87570413 rs3766018 A T 842.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.217;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.20;ReadPosRankSum=-0.246;SB=-1.390e+02;SOR=0.593;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:19,30:49:99:871,0,554 1 87598117 rs6686259 T G 316.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.652;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.304;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.90;ReadPosRankSum=1.632;SB=-8.000e+01;SOR=1.352;VQSLOD=7.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,13:32:99:345,0,548 1 87599697 rs6576865 G A 789.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.783;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.40;ReadPosRankSum=-0.338;SB=-5.500e+02;SOR=0.623;VQSLOD=9.14;culprit=QD GT:AD:DP:GQ:PL 0/1:55,39:94:99:818,0,1273 1 87633761 rs10782593 C T 755.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.835;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.18;ReadPosRankSum=-0.941;SB=-2.560e+02;SOR=1.284;VQSLOD=7.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,27:44:99:784,0,368 1 87709224 rs6576882 C A 262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=6.772;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.76;ReadPosRankSum=-0.969;SB=-1.417e+01;SOR=2.215;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 0/1:20,10:30:99:291,0,518 1 87716226 rs11161953 T A 1392.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.733;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=0.890;SB=-8.860e+02;SOR=0.598;VQSLOD=9.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,58:104:99:1421,0,1154 1 87797957 rs77586397 G C 2721.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.95;SB=-1.761e+03;SOR=0.874;VQSLOD=5.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:2750,202,0 1 89225976 rs430600 T C 1106.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-6.390e+02;SOR=0.927;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:81:1135,81,0 1 89236029 rs7541301 T A 1236.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.71;SB=-2.790e+02;SOR=2.891;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1265,99,0 1 89271574 rs786906 T C 2228.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.77;SB=-1.083e+03;SOR=0.886;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2257,172,0 1 89280965 rs786918 A G 835.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.39;SB=-8.197e+01;SOR=4.003;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:63:864,63,0 1 89322982 rs2794318 G A 4543.77 PASS AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6985;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.13;SB=-3.011e+03;SOR=0.745;VQSLOD=6.04;culprit=DP GT:AD:DP:GQ:PL 1/1:0,156:157:99:4572,331,0 1 89478854 rs4656076 C G 495.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=0.00;SOR=5.283;VQSLOD=8.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:524,39,0 1 89478868 rs113490655 G A 275.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.259;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=0.779;SB=0.00;SOR=0.693;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:304,0,268 1 89479063 rs4656077 G A 1323.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=-6.230e+02;SOR=1.464;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:96:1352,96,0 1 89479074 rs4656078 C T 1170.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-5.060e+02;SOR=1.609;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:87:1199,87,0 1 89479758 rs3795543 T C 2985.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.71;SB=-1.812e+03;SOR=0.900;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3014,220,0 1 89486037 rs7555039 C T 3046.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-6.950e+02;SOR=2.687;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,92:92:99:3075,226,0 1 89520574 rs10922554 C A 2076.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.06;SB=-1.049e+03;SOR=1.371;VQSLOD=5.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2105,153,0 1 89520636 rs10922555 G A 1098.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=1;POSITIVE_TRAIN_SITE;QD=31.39;SB=-3.520e+02;SOR=2.049;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:84:1127,84,0 1 89520643 rs10922556 C T 1049.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=2;POSITIVE_TRAIN_SITE;QD=31.81;SB=-2.620e+02;SOR=2.376;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:1,32:33:81:1078,81,0 1 89522512 rs4376712 C T 2110.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.15;SB=-8.270e+02;SOR=1.819;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2139,157,0 1 89522646 rs1048425 G C 4250.77 PASS AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.49;SB=-1.741e+03;SOR=1.495;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,121:121:99:4279,310,0 1 89525219 . CT C 274.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;DP=58;ExcessHet=3.0103;FS=3.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.97;RPA=18,17;RU=T;ReadPosRankSum=-0.057;SB=-9.314e+01;SOR=0.219;STR;VQSLOD=7.26;culprit=QD GT:AD:DP:GQ:PL 0/1:23,23:58:99:312,0,379 1 89574026 rs1329119 G A 1834.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;SB=-7.090e+02;SOR=1.850;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1863,135,0 1 89579941 rs2230338 T C 3105.77 PASS AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9111;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.49;SB=-1.829e+03;SOR=0.827;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,109:109:99:3134,232,0 1 89582690 rs1803632 G C 2727.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=-1.102e+03;SOR=1.638;VQSLOD=5.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2756,199,0 1 89583544 rs2209956 T C 342.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.28;SB=-4.076e+01;SOR=3.258;VQSLOD=7.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:371,27,0 1 89607479 rs6666846 G T 1250.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-3.730e+02;SOR=2.191;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:96:1279,96,0 1 89607486 rs6658235 T C 1222.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.94;SB=-2.750e+02;SOR=2.649;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:90:1251,90,0 1 89615979 rs586609 C T 380.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-3.577e+01;SOR=3.442;VQSLOD=7.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:409,30,0 1 89616127 rs138285876 G A 712.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.180;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.90;ReadPosRankSum=1.252;SB=-3.780e+02;SOR=1.149;VQSLOD=6.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,31:72:99:741,0,903 1 89618472 rs10710842 GA G 773.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;DB;DP=53;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=61.81;MQ0=0;MQRankSum=1.451;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.47;RPA=16,15;RU=A;ReadPosRankSum=-2.462;SB=-3.863e+02;SOR=0.368;STR;VQSLOD=0.024;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:8,42:53:32:811,0,32 1 89637578 rs676913 G A 7014.77 PASS AC=2;AF=1.00;AN=2;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.06;SB=-4.372e+03;SOR=0.961;VQSLOD=1.99;culprit=DP GT:AD:DP:GQ:PL 1/1:0,250:250:99:7043,512,0 1 89650850 rs623134 A T 654.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.92;SB=0.00;SOR=5.784;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:683,51,0 1 89652071 . T C 259.80 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=25.98;SB=-1.593e+02;SOR=1.085;VQSLOD=4.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:21:288,21,0 1 89661228 rs650448 T G 2342.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.00;SB=-7.930e+02;SOR=2.082;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2371,172,0 1 89664276 rs493470 T C 459.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.61;SB=-4.176e+01;SOR=3.767;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:488,36,0 1 89726592 rs535351 G A 1666.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-4.076e+01;SOR=6.229;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1695,132,0 1 89727870 rs76346754 A T 220.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.168;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.706;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.20;ReadPosRankSum=-0.307;SB=-9.732e-01;SOR=1.445;VQSLOD=6.45;culprit=QD GT:AD:DP:GQ:PL 0/1:16,8:24:99:249,0,492 1 89730723 rs9628688 C T 545.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.430;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-0.963;SB=-1.650e+02;SOR=0.484;VQSLOD=10.07;culprit=FS GT:AD:DP:GQ:PL 0/1:22,22:44:99:574,0,615 1 89731959 rs12729209 G A 271.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.974;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=-1.797;SB=-6.500e+01;SOR=0.904;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:13,11:24:99:300,0,389 1 89732237 rs61729628 G A 801.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.356;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.008;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=-1.620;SB=-2.680e+02;SOR=0.506;VQSLOD=9.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,31:76:99:830,0,1250 1 89733273 rs6690597 T C 627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.424;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=3.381;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=0.969;SB=-1.970e+02;SOR=0.169;VQSLOD=9.68;culprit=SOR GT:AD:DP:GQ:PL 0/1:23,24:47:99:656,0,672 1 89734274 rs3795542 A C 260.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.71;ReadPosRankSum=-1.834;SB=0.00;SOR=1.802;VQSLOD=8.61;culprit=FS GT:AD:DP:GQ:PL 0/1:3,8:11:87:289,0,87 1 89735314 rs3806338 G A 1080.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.357;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=7.562;HaplotypeScore=1.7860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=-1.000;SB=-2.680e+02;SOR=0.138;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 0/1:27,37:64:99:1109,0,801 1 89755671 rs623771 T A 344.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.52;SB=-1.891e+02;SOR=1.179;VQSLOD=5.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:27:373,27,0 1 89833933 rs9428023 C T 604.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=0.00;SOR=5.784;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:633,51,0 1 89844035 rs35837853 T C 1829.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.434;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=1.325;HaplotypeScore=1.8519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=-0.220;SB=-1.205e+03;SOR=0.514;VQSLOD=7.45;culprit=DP GT:AD:DP:GQ:PL 0/1:71,74:145:99:1858,0,1754 1 89845926 rs67367078 GT G 1106.73 PASS AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.99;RPA=9,8;RU=T;SB=-3.340e+02;SOR=1.845;STR;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1144,123,0 1 89847372 rs4658359 G T 2806.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-1.566e+03;SOR=0.836;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2835,214,0 1 89847411 rs4658360 C T 2626.77 PASS AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.55;SB=-1.314e+03;SOR=0.929;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,92:93:99:2655,205,0 1 89847444 rs4658146 A G 2961.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-1.710e+03;SOR=0.776;VQSLOD=5.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:2990,223,0 1 89849201 rs928652 C G 3220.76 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-1.802e+03;SOR=1.077;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,108:108:99:3249,232,0 1 89849268 rs41288387 T C 1291.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=2.559;HaplotypeScore=6.4096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=-0.589;SB=-6.960e+02;SOR=0.466;VQSLOD=9.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,48:107:99:1320,0,1571 1 89849350 rs928653 G A 2643.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.33;SB=-1.325e+03;SOR=0.948;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2672,205,0 1 89849441 rs928654 T G 2384.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-1.425e+03;SOR=0.693;VQSLOD=5.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2413,175,0 1 89849574 rs928655 G A 722.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.071;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=5.672;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-0.796;SB=-4.150e+02;SOR=0.354;VQSLOD=7.80;culprit=FS GT:AD:DP:GQ:PL 0/1:27,27:54:99:751,0,736 1 89849742 rs959460 A T 776.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-2.221e+02;SOR=2.215;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:805,60,0 1 89875791 rs4233427 T C 2510.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.21;SB=-7.597e+01;SOR=6.154;VQSLOD=4.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2539,193,0 1 89876132 rs4258205 T C 1935.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.81;SB=-4.830e+02;SOR=2.683;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1964,156,0 1 89885854 rs6673154 G A 979.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.48;SB=-6.440e+02;SOR=0.746;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:72:1008,72,0 1 89886714 rs6428538 A G 2649.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=-1.232e+03;SOR=1.347;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2678,193,0 1 89886796 rs6428539 G A 2613.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.41;SB=-1.357e+03;SOR=1.095;VQSLOD=5.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,92:92:99:2642,193,0 1 89887017 . T C 64.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;DP=10;Dels=0.00;ExcessHet=3.0103;FS=5.441;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.48;ReadPosRankSum=-0.816;SB=-2.601e+01;SOR=1.472;VQSLOD=3.99;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:93:93,0,177 1 89887468 rs67428662 TG T 780.73 PASS AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.94;SB=-4.676e+01;SOR=4.892;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:818,69,0 1 89888530 rs4261099 C T 1408.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-5.830e+02;SOR=1.659;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1437,105,0 1 89888552 rs4282800 T A 1674.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.46;SB=-9.650e+02;SOR=0.941;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1703,123,0 1 89888585 rs4415545 C G 2100.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=28.01;SB=-1.345e+03;SOR=0.832;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2129,154,0 1 89888588 rs4506445 G T 2112.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.17;SB=-1.323e+03;SOR=0.832;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2141,160,0 1 89889456 . T C 410.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.825;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.80;MQ0=0;MQRankSum=-4.231;QD=7.47;ReadPosRankSum=-0.854;SB=-2.270e+02;SOR=0.698;VQSLOD=1.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,23:55:99:439,0,784 1 90171835 rs6657969 C T 1578.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.79;SB=-5.990e+02;SOR=1.938;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1607,117,0 1 90178743 rs474536 A G 2445.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.50;SB=-1.411e+03;SOR=0.776;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2474,184,0 1 90179532 rs12032393 A G 989.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.365;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=6.066;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-0.011;SB=-3.810e+02;SOR=1.238;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 0/1:44,32:76:99:1018,0,1182 1 90459744 rs2703984 A G 2511.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=-9.600e+02;SOR=1.911;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2540,196,0 1 90459982 rs7556257 G A 507.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=0.00;SOR=5.670;VQSLOD=8.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:45:536,45,0 1 91182880 rs78829010 G T 112.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=5.563;HaplotypeScore=2.4750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.26;ReadPosRankSum=0.839;SB=-2.657e-01;SOR=2.303;VQSLOD=5.32;culprit=QD GT:AD:DP:GQ:PL 0/1:13,5:18:99:141,0,389 1 91383589 rs2448020 T G 825.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.320;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.972;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=0.171;SB=-4.840e+02;SOR=0.445;VQSLOD=10.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,32:65:99:854,0,892 1 91402917 . T TA 254.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.19;RPA=11,12;RU=A;ReadPosRankSum=0.444;SB=0.00;SOR=1.136;STR;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 0/1:10,15:25:99:292,0,146 1 91447985 rs358691 C T 1260.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.02;SB=-5.650e+02;SOR=1.714;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:96:1289,96,0 1 91728053 rs585898 G A 2105.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;SB=-1.366e+03;SOR=0.693;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2134,154,0 1 91728202 rs555432 T C 757.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.74;SB=-1.245e+02;SOR=3.160;VQSLOD=5.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:57:786,57,0 1 91731756 rs75935068 T C 378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.973;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=2.207;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=1.684;SB=-2.901e+01;SOR=1.609;VQSLOD=5.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,14:30:99:407,0,447 1 91739208 rs281964 C T 606.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.94;SB=-1.095e+02;SOR=2.948;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:48:635,48,0 1 91739414 rs281963 G A 1119.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-3.480e+02;SOR=2.115;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:84:1148,84,0 1 91739457 rs79093507 A C 366.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.122;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=1.270;SB=0.00;SOR=1.179;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:395,0,223 1 91740105 rs176019 T G 2029.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;SB=-6.530e+02;SOR=2.338;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2058,160,0 1 91742055 rs281959 T C 369.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.511;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.11;ReadPosRankSum=-0.170;SB=0.00;SOR=1.609;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:5,11:16:99:398,0,141 1 91742419 rs141161527 AATT A 327.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.742;DB;DP=17;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.28;RPA=2,1;RU=ATT;ReadPosRankSum=2.836;SB=-8.900e+01;SOR=1.565;STR;VQSLOD=4.75;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,8:17:99:365,0,469 1 91781413 rs281992 T G 367.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.293;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=0.527;SB=-1.740e+02;SOR=0.693;VQSLOD=10.02;culprit=FS GT:AD:DP:GQ:PL 0/1:13,16:29:99:396,0,410 1 91781576 rs12568483 C A 504.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.726;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.709;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-1.475;SB=-2.410e+02;SOR=1.074;VQSLOD=7.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,20:41:99:533,0,647 1 91782011 rs74843031 G A 221.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.453;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.72;ReadPosRankSum=-0.318;SB=-1.820e+02;SOR=0.346;VQSLOD=8.75;culprit=QD GT:AD:DP:GQ:PL 0/1:21,12:33:99:250,0,643 1 91784887 rs10493845 G A 298.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.835;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.298;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.29;ReadPosRankSum=-1.004;SB=-2.110e+02;SOR=0.404;VQSLOD=9.26;culprit=QD GT:AD:DP:GQ:PL 0/1:27,14:41:99:327,0,672 1 91793877 rs281972 T C 629.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-1.603e+02;SOR=2.419;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:48:658,48,0 1 91794744 rs1974253 C T 1208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.003;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=2.805;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=0.535;SB=-3.150e+02;SOR=1.089;VQSLOD=7.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:67,46:113:99:1237,0,1903 1 91804353 rs78167983 C G 1629.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.438;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=0.647;SB=-6.330e+02;SOR=0.735;VQSLOD=8.71;culprit=FS GT:AD:DP:GQ:PL 0/1:52,64:116:99:1658,0,1450 1 91813184 rs281936 C T 958.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;SB=-1.901e+02;SOR=3.056;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:78:987,78,0 1 91841301 rs282036 T C 979.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;SB=-1.215e+02;SOR=3.912;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:75:1008,75,0 1 91844815 rs4658219 T C 591.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.916;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=1.217;SB=-2.620e+02;SOR=0.290;VQSLOD=9.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,23:35:99:620,0,338 1 91846374 rs282033 C A 1889.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.63;SB=-1.036e+03;SOR=1.112;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:1918,138,0 1 91850826 . C CA 381.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQ0=0;MQRankSum=1.132;QD=9.79;RPA=9,10;RU=A;ReadPosRankSum=0.507;SB=-1.160e+02;SOR=0.714;STR;VQSLOD=2.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,18:41:99:419,0,453 1 91850970 rs17131419 C G 327.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.85;ReadPosRankSum=-0.735;SB=-7.300e+01;SOR=0.892;VQSLOD=9.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,10:15:99:356,0,157 1 91851253 rs282026 T C 1968.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.37;SB=-9.790e+02;SOR=1.034;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1997,144,0 1 91859795 rs282009 T C 3889.77 PASS AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-2.323e+03;SOR=0.759;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,124:124:99:3918,283,0 1 91870410 rs17131429 G C 706.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.497;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.67;ReadPosRankSum=0.652;SB=-4.350e+02;SOR=0.678;VQSLOD=7.81;culprit=QD GT:AD:DP:GQ:PL 0/1:73,33:106:99:735,0,2113 1 91967454 rs13447460 A G 119.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.832;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.241;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.79;ReadPosRankSum=0.696;SB=-6.800e+01;SOR=0.223;VQSLOD=8.60;culprit=QD GT:AD:DP:GQ:PL 0/1:18,7:25:99:148,0,567 1 91973557 rs553606 T G 1936.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=-7.540e+02;SOR=1.839;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:1965,141,0 1 91980447 rs483532 A G 2725.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-1.099e+03;SOR=1.770;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:92:99:2754,214,0 1 91989572 rs488126 T G 819.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.54;SB=-1.215e+02;SOR=3.352;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:63:848,63,0 1 91989707 rs1046622 A G 1072.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.077;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=-1.160;SB=-6.650e+02;SOR=0.754;VQSLOD=8.34;culprit=FS GT:AD:DP:GQ:PL 0/1:59,49:108:99:1101,0,1505 1 92108899 rs2493202 C T 3340.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-1.614e+03;SOR=1.072;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:3369,250,0 1 92174260 rs284878 A G 7881.77 PASS AC=2;AF=1.00;AN=2;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4304;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=-4.336e+03;SOR=1.022;VQSLOD=5.07;culprit=DP GT:AD:DP:GQ:PL 1/1:0,250:250:99:7910,575,0 1 92181670 rs2029354 C A 532.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.968;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=6.714;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-0.142;SB=-1.611e+01;SOR=2.124;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 0/1:25,19:44:99:561,0,794 1 92181678 rs2029355 T G 656.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.952;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=7.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-0.362;SB=-2.302e+01;SOR=2.303;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 0/1:26,22:48:99:685,0,748 1 92184673 rs4658260 G A 203.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.159;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=0.277;SB=0.00;SOR=0.836;VQSLOD=10.24;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:232,0,206 1 92184744 rs4658261 C T 802.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.255;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=-0.468;SB=-1.710e+02;SOR=0.917;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:20,29:49:99:831,0,572 1 92185136 . C T 417.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.664;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.41;ReadPosRankSum=-0.022;SB=-9.900e+01;SOR=1.158;VQSLOD=6.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,15:29:99:446,0,350 1 92185185 rs2279455 T C 494.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=-1.533e+02;SOR=1.911;VQSLOD=7.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:523,39,0 1 92185657 rs1805112 C T 1047.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.481;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=4.799;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=1.079;SB=-2.850e+02;SOR=1.378;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 0/1:40,39:79:99:1076,0,1072 1 92195601 rs10783002 G A 963.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.23;SB=-2.520e+02;SOR=2.226;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:75:992,75,0 1 92200593 rs11165376 A G 878.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.84;SB=-1.613e+02;SOR=3.014;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:66:907,66,0 1 92262874 rs2810904 T C 910.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.160;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=5.074;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-0.599;SB=-2.210e+02;SOR=1.341;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 0/1:37,34:71:99:939,0,1157 1 92428495 rs10783071 C A 723.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.47;SB=-2.261e+02;SOR=1.828;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:57:752,57,0 1 92446112 rs11165911 T C 457.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-1.255e+02;SOR=2.448;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:486,36,0 1 92446398 rs2303967 T A 1634.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=-7.830e+02;SOR=1.051;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1663,129,0 1 92457843 rs10747493 C T 744.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.03;SB=-3.200e+02;SOR=1.519;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:57:773,57,0 1 92568263 rs527412 A G 699.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.020;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-0.567;SB=-1.690e+02;SOR=0.693;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:24,24:48:99:728,0,646 1 92573670 rs11166163 G A 749.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.911;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.290;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=-0.152;SB=-2.350e+02;SOR=1.061;VQSLOD=7.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,28:47:99:778,0,444 1 92646021 rs1483022 G A 703.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.995;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.221;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=0.184;SB=-3.080e+02;SOR=1.136;VQSLOD=7.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,24:43:99:732,0,508 1 92647223 rs560389 A G 934.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.003;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.089;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=0.491;SB=-4.710e+02;SOR=0.740;VQSLOD=6.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,31:67:99:963,0,998 1 92647532 rs565156 C A 2494.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-1.411e+03;SOR=0.850;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2523,190,0 1 92649292 rs570368 A T 71.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.399;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.99;ReadPosRankSum=2.516;SB=0.00;SOR=0.169;VQSLOD=8.66;culprit=QD GT:AD:DP:GQ:PL 0/1:13,5:18:99:100,0,455 1 92649335 rs569593 A G 152.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.285;HaplotypeScore=17.1515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.49;ReadPosRankSum=-1.796;SB=-6.600e+01;SOR=0.195;VQSLOD=7.35;culprit=QD GT:AD:DP:GQ:PL 0/1:25,9:34:99:181,0,670 1 92708000 rs66485169 A AAC 378.75 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.93;RPA=1,2;RU=AC;SB=0.00;SOR=4.407;STR;VQSLOD=8.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,8:10:24:416,24,0 1 92711067 rs3131827 A T 550.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.822;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.36;ReadPosRankSum=-0.991;SB=-1.340e+02;SOR=1.358;VQSLOD=5.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,20:30:99:579,0,219 1 92712266 rs974924 C T 904.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-2.251e+02;SOR=2.546;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:933,72,0 1 92712598 rs35752451 GAA G 1035.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;DB;DP=65;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.93;RPA=4,2;RU=A;ReadPosRankSum=1.012;SB=-3.140e+02;SOR=0.439;STR;VQSLOD=9.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,25:65:99:1073,0,1672 1 92735359 rs1487540 T C 627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.045;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=6.526;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=1.097;SB=-3.560e+02;SOR=0.124;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:9,27:36:99:656,0,226 1 92755943 rs3103178 G A 239.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.038;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=1.173;SB=-6.600e+01;SOR=0.307;VQSLOD=10.01;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:268,0,313 1 92763091 . C CA 536.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.93;RPA=14,15;RU=A;ReadPosRankSum=-0.504;SB=-1.850e+02;SOR=0.859;STR;VQSLOD=7.87;culprit=FS GT:AD:DP:GQ:PL 0/1:17,28:52:99:574,0,227 1 92764828 rs10875348 T A 698.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-1.921e+02;SOR=2.400;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:54:727,54,0 1 92765848 rs1542685 A T 442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.507;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-1.382;SB=-1.710e+02;SOR=0.941;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:13,19:32:99:471,0,346 1 92799151 rs1487537 C T 565.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=0.00;SOR=5.784;VQSLOD=8.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:594,48,0 1 92852504 rs10747411 A G 1017.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.81;SB=-1.583e+02;SOR=3.545;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:84:1046,84,0 1 92946479 rs11164605 G A 884.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.03;SB=-3.510e+02;SOR=1.220;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:72:913,72,0 1 92979354 rs6603979 A G 4168.77 PASS AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-2.473e+03;SOR=0.886;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,134:134:99:4197,301,0 1 92979681 rs56325708 TTA T 373.74 PASS AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.00;RPA=4,3;RU=TA;SB=0.00;SOR=4.615;STR;VQSLOD=8.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,9:11:27:411,27,0 1 93029453 rs6656432 A G 644.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=0.00;SOR=4.407;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:673,51,0 1 93071048 rs2050597 G T 1417.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.76;SB=-3.140e+02;SOR=2.780;VQSLOD=7.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1446,108,0 1 93087689 . T TA 155.82 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.17;RPA=11,12;RU=A;ReadPosRankSum=-1.335;SB=0.00;SOR=2.494;STR;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 0/1:2,9:11:17:193,0,17 1 93089823 rs7514716 T C 546.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.04;SB=-3.410e+02;SOR=0.784;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:42:575,42,0 1 93128514 . T TA 239.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQ0=0;MQRankSum=0.891;POSITIVE_TRAIN_SITE;QD=10.42;RPA=15,16;RU=A;ReadPosRankSum=0.978;SB=-2.108e+01;SOR=1.230;STR;VQSLOD=3.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,14:28:99:277,0,112 1 93128854 rs10747450 A G 513.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-2.061e+02;SOR=1.739;VQSLOD=6.14;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,17:17:39:542,39,0 1 93160902 rs2391199 T C 2456.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=-1.275e+03;SOR=1.003;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:80:99:2485,181,0 1 93163385 rs7418336 A G 886.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-2.471e+02;SOR=2.387;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:72:915,72,0 1 93167854 rs10218670 A G 416.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.39;SB=0.00;SOR=4.977;VQSLOD=8.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:445,33,0 1 93306317 rs10874744 G A 4738.77 PASS AC=2;AF=1.00;AN=2;DB;DP=161;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2128;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.62;SB=-2.767e+03;SOR=0.972;VQSLOD=5.64;culprit=DP GT:AD:DP:GQ:PL 1/1:0,160:161:99:4767,346,0 1 93426866 rs945629 T C 366.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-1.483e+02;SOR=1.270;VQSLOD=5.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:395,30,0 1 93426869 rs1415069 G C 375.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.16;SB=-1.603e+02;SOR=1.270;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:404,30,0 1 93545157 rs2815419 G A 2204.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.1510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-1.312e+03;SOR=0.779;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2233,166,0 1 93576302 rs494745 T G 419.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.01;SB=0.00;SOR=4.977;VQSLOD=5.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:448,33,0 1 93580581 rs2815427 G C 2058.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-8.710e+02;SOR=1.410;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2087,150,0 1 93580879 rs2295424 T C 732.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.54;SB=-1.643e+02;SOR=2.419;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:761,57,0 1 93580992 rs566843 C T 1955.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=29.9510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.31;SB=-7.220e+02;SOR=1.569;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1984,162,0 1 93581024 rs2295423 T C 2520.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.7962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.61;SB=-1.065e+03;SOR=1.402;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:78:99:2549,190,0 1 93602194 rs2281524 C T 1389.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SB=-3.770e+02;SOR=2.303;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1418,105,0 1 93620393 rs1060622 G A 3663.77 PASS AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.79;SB=-1.992e+03;SOR=0.963;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,123:124:99:3692,274,0 1 93621483 rs1057257 A G 716.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.83;SB=-3.677e+01;SOR=4.615;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:745,54,0 1 93646207 rs2297707 T C 1895.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=-1.189e+03;SOR=0.725;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1924,138,0 1 93648816 rs2815409 A G 452.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=0.00;SOR=5.136;VQSLOD=7.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:481,36,0 1 93649732 rs6682670 A G 1398.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-1.165e+02;SOR=4.351;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1427,105,0 1 93659350 rs2815411 A T 553.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-1.125e+02;SOR=2.833;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:582,45,0 1 93672723 rs2815413 A C 945.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-2.451e+02;SOR=2.387;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:72:974,72,0 1 93676314 rs555161 A G 1268.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.72;SB=-2.431e+02;SOR=3.258;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1297,105,0 1 93683388 . T C 166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.053;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-0.950;SB=-2.501e+01;SOR=1.051;VQSLOD=7.92;culprit=QD GT:AD:DP:GQ:PL 0/1:14,6:20:99:195,0,369 1 93711782 rs3754186 T A 1189.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-4.790e+02;SOR=1.730;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:90:1218,90,0 1 93735934 rs41292129 A T 553.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-0.202;SB=-1.980e+02;SOR=0.818;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:24,23:47:99:582,0,671 1 93998640 rs34814765 AT A 1653.73 PASS AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.78;RPA=2,1;RU=T;SB=-3.470e+02;SOR=2.670;STR;VQSLOD=0.903;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:43:99:1691,120,0 1 94012287 rs237425 G A 491.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.18;SB=0.00;SOR=5.421;VQSLOD=8.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:520,42,0 1 94041787 rs34974123 G GAC 2654.73 PASS AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;RPA=2,3;RU=AC;SB=-8.470e+02;SOR=1.654;STR;VQSLOD=4.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:63:99:2692,160,0 1 94054382 rs236319 T C 113.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.13;ReadPosRankSum=-0.684;SB=-9.000e+01;SOR=0.330;VQSLOD=10.05;culprit=QD GT:AD:DP:GQ:PL 0/1:7,7:14:99:142,0,245 1 94312482 . T TC 1582.73 PASS AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;RPA=1,2;RU=C;SB=-7.190e+02;SOR=0.984;STR;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1620,111,0 1 94312528 . G GC 1020.73 PASS AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.94;RPA=1,2;RU=C;SB=-2.651e+02;SOR=2.124;STR;VQSLOD=5.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:72:1058,72,0 1 94312533 . G GC 497.73 PASS AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;RPA=1,2;RU=C;SB=-4.776e+01;SOR=3.611;STR;VQSLOD=5.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:535,36,0 1 94312543 . C CCG 510.73 PASS AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.72;SB=-4.976e+01;SOR=3.611;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:548,36,0 1 94312544 . G C 413.77 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9983;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.48;SB=-4.276e+01;SOR=3.611;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:442,33,0 1 94312554 . A AG 326.75 PASS AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.49;RPA=1,2;RU=G;SB=0.00;SOR=4.407;STR;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,8:10:24:364,24,0 1 94335194 rs1051394 A T 176.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.466;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.197;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=-0.440;SB=-2.203e+01;SOR=1.402;VQSLOD=6.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,7:17:99:205,0,270 1 94335643 . G GA 700.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;DP=64;ExcessHet=3.0103;FS=5.392;MLEAC=1;MLEAF=0.500;MQ=60.34;MQ0=0;MQRankSum=1.544;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.30;RPA=6,7;RU=A;ReadPosRankSum=-1.002;SB=-3.140e+02;SOR=0.268;STR;VQSLOD=0.067;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,29:64:99:738,0,792 1 94336498 . C CA 82.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQ0=0;MQRankSum=1.420;POSITIVE_TRAIN_SITE;QD=5.17;RPA=12,13;RU=A;ReadPosRankSum=0.597;SB=0.00;SOR=0.340;STR;VQSLOD=3.04;culprit=QD GT:AD:DP:GQ:PL 0/1:10,6:18:99:120,0,174 1 94341137 rs2273166 C T 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.861;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=0.349;SB=0.00;SOR=0.859;VQSLOD=10.46;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:207,0,157 1 94341267 rs2273165 A G 668.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.027;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=0.222;SB=-3.610e+02;SOR=0.763;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:20,26:46:99:697,0,464 1 94342564 rs3747965 C A 735.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.862;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=8.271;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=-0.049;SB=-3.700e+02;SOR=0.867;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 0/1:40,29:69:99:764,0,1099 1 94343023 rs2391322 A G 861.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.988;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.978;SB=-4.540e+02;SOR=0.733;VQSLOD=8.17;culprit=FS GT:AD:DP:GQ:PL 0/1:26,31:57:99:890,0,696 1 94343233 rs3789457 T C 1828.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.188;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=1.336;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=0.002;SB=-1.055e+03;SOR=0.736;VQSLOD=8.79;culprit=DP GT:AD:DP:GQ:PL 0/1:72,67:139:99:1857,0,1922 1 94344716 rs2235971 C T 3115.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.747;DB;DP=249;Dels=0.00;ExcessHet=3.0103;FS=7.969;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=1.150;SB=-1.483e+03;SOR=1.139;VQSLOD=3.62;culprit=DP GT:AD:DP:GQ:PL 0/1:136,113:249:99:3144,0,3655 1 94471075 rs1762114 A G 2685.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.51;SB=-1.472e+03;SOR=0.906;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:2714,199,0 1 94476555 rs537831 G A 641.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.48;SB=-4.176e+01;SOR=4.407;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:670,51,0 1 94480037 rs2275033 C T 253.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=-0.203;SB=-9.700e+01;SOR=0.818;VQSLOD=8.54;culprit=FS GT:AD:DP:GQ:PL 0/1:13,11:24:99:282,0,333 1 94487354 rs472908 G A 1239.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.411;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.787;HaplotypeScore=2.6204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-0.440;SB=-5.840e+02;SOR=0.854;VQSLOD=8.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,49:97:99:1268,0,1301 1 94488840 rs190475334 C T 793.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.506;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.125;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=-1.843;SB=-4.280e+02;SOR=0.757;VQSLOD=5.17;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:20,30:50:99:822,0,508 1 94495407 rs4147846 C T 1483.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;SB=-6.630e+02;SOR=1.609;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1512,108,0 1 94495417 rs4147845 C T 1353.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.43;SB=-4.790e+02;SOR=1.931;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1382,102,0 1 94495487 rs4147844 G A 640.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.01;SB=-3.976e+01;SOR=4.407;VQSLOD=7.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:669,51,0 1 94495816 rs4147843 T C 636.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.45;SB=-3.876e+01;SOR=4.407;VQSLOD=7.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:665,51,0 1 94495930 rs547806 T C 3299.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SB=-7.240e+02;SOR=2.670;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:3328,244,0 1 94496253 rs2297671 G A 1840.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.09;SB=-1.593e+02;SOR=4.654;VQSLOD=5.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1869,150,0 1 94497178 rs4147841 G A 493.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.05;SB=-2.401e+02;SOR=1.371;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:39:522,39,0 1 94511533 rs3789398 G A 1414.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=-1.543e+02;SOR=4.174;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1443,114,0 1 94568822 rs2297636 T C 1070.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.1995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.94;SB=-3.340e+02;SOR=2.012;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:81:1099,81,0 1 94574053 rs11165073 C A 2405.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-8.230e+02;SOR=2.012;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2434,181,0 1 94574342 RISN_ABCR AT A 431.73 PASS AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.56;RPA=12,11;RU=T;SB=-2.977e+01;SOR=4.712;STR;VQSLOD=2.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:23:61:469,61,0 1 94576893 rs2297635 G A 766.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-1.195e+02;SOR=3.014;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:795,60,0 1 94576968 RISN_ABCR T C 2074.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=-5.480e+02;SOR=2.340;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2103,157,0 1 94578548 rs4847281 T C 874.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.64;SB=-2.590e+02;SOR=1.981;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:66:903,66,0 1 94619937 rs78905824 G A 97.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.15;ReadPosRankSum=-0.132;SB=-5.500e+01;SOR=0.527;VQSLOD=8.38;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:126,0,345 1 94639337 rs1330858 A G 665.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=0.00;SOR=5.892;VQSLOD=8.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:694,54,0 1 94639447 rs1999272 C T 3359.77 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.00;SB=-9.060e+02;SOR=2.465;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:105:99:3388,253,0 1 94668046 rs1541099 C T 2537.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.86;SB=-1.521e+03;SOR=0.815;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2566,190,0 1 94670784 rs10443184 T C 186.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.608;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=4.218;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.02;ReadPosRankSum=0.127;SB=-6.829e-02;SOR=1.755;VQSLOD=5.66;culprit=QD GT:AD:DP:GQ:PL 0/1:21,10:31:99:215,0,558 1 94674723 rs6684237 G A 1059.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-3.880e+02;SOR=1.609;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:81:1088,81,0 1 94674726 rs2274788 T C 457.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.160;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=5.496;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-0.353;SB=-8.400e+01;SOR=1.981;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 0/1:21,15:36:99:486,0,498 1 94924046 rs2147794 A G 105.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.548;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=0.702;SB=-3.501e+01;SOR=0.527;VQSLOD=8.62;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:134,0,195 1 94930345 rs16946 G A 842.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.412;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.861;HaplotypeScore=5.2870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=1.051;SB=-5.070e+02;SOR=0.713;VQSLOD=7.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,34:83:99:871,0,1422 1 94941376 rs681187 G A 465.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.163;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-0.415;SB=-1.765e+00;SOR=1.828;VQSLOD=6.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,15:29:99:494,0,430 1 94948932 rs368166439 A G 192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.77;ReadPosRankSum=0.185;SB=0.00;SOR=0.693;VQSLOD=8.73;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:221,0,232 1 94980671 rs3118109 C G 1452.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.06;SB=-8.420e+02;SOR=1.051;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1481,105,0 1 94995819 rs3354 C T 338.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.851;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=-0.981;SB=-4.076e+01;SOR=0.793;VQSLOD=9.00;culprit=FS GT:AD:DP:GQ:PL 0/1:4,11:15:99:367,0,119 1 94997751 rs200985472 C G 154.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=64.81;MQ0=0;MQRankSum=3.440;QD=11.91;ReadPosRankSum=-0.001;SB=0.00;SOR=0.569;VQSLOD=1.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,6:13:99:183,0,195 1 94997751 rs66855746 CA C 174.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.81;MQ0=0;MQRankSum=3.440;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-0.001;SB=0.00;SOR=0.569;VQSLOD=3.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,6:13:99:212,0,304 1 95001600 rs698946 A C 4124.77 PASS AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5802;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=-2.358e+03;SOR=0.781;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,140:140:99:4153,310,0 1 95005758 rs13306321 A G 727.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.391;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.228;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-0.195;SB=-3.460e+02;SOR=0.459;VQSLOD=9.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,30:49:99:756,0,504 1 95286085 rs11165252 G A 345.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.81;SB=-2.001e+02;SOR=1.022;VQSLOD=5.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:374,27,0 1 95286094 rs10782992 G T 344.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.73;SB=-2.031e+02;SOR=1.022;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:373,27,0 1 95290305 rs6541372 T C 472.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.77;SB=-8.197e+01;SOR=2.985;VQSLOD=7.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:501,36,0 1 95290315 rs36094793 A G 461.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.79;SB=-4.176e+01;SOR=3.767;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:490,36,0 1 95291366 rs10874894 A G 3211.76 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.17;SB=-2.059e+03;SOR=0.881;VQSLOD=5.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,114:114:99:3240,235,0 1 95294089 rs2640065 T C 1240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.121;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=1.564;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-0.901;SB=-5.830e+02;SOR=0.883;VQSLOD=7.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,52:108:99:1269,0,1357 1 95305440 rs859120 A G 1616.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.40;SB=-8.990e+02;SOR=1.159;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1645,117,0 1 95330372 rs859098 G A 1920.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;SB=-8.860e+02;SOR=1.270;VQSLOD=7.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1949,144,0 1 95332814 rs74104711 C T 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.931;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.291;HaplotypeScore=2.6985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-0.231;SB=-1.205e+02;SOR=0.160;VQSLOD=9.06;culprit=SOR GT:AD:DP:GQ:PL 0/1:12,12:25:99:317,0,377 1 95333068 rs859096 G T 305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.380;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=10.488;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-0.862;SB=-5.200e+01;SOR=2.652;VQSLOD=5.74;culprit=FS GT:AD:DP:GQ:PL 0/1:11,12:23:99:334,0,241 1 95358096 rs859063 A G 687.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.335;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=1.358;SB=-2.160e+02;SOR=0.779;VQSLOD=10.04;culprit=FS GT:AD:DP:GQ:PL 0/1:19,24:43:99:716,0,497 1 95363663 rs41497749 A C 690.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.071;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=5.260;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=-1.001;SB=-4.610e+02;SOR=0.264;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:34,32:66:99:719,0,971 1 95365257 rs3216025 AT A 118.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=0.842;POSITIVE_TRAIN_SITE;QD=7.92;RPA=4,3;RU=T;ReadPosRankSum=-0.688;SB=-5.100e+01;SOR=0.646;STR;VQSLOD=3.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,6:15:99:156,0,272 1 95367136 rs859059 G A 559.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-7.997e+01;SOR=3.258;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:588,48,0 1 95367649 rs859058 T C 736.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.653;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=6.026;HaplotypeScore=3.7675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.88;ReadPosRankSum=-1.595;SB=-4.170e+02;SOR=0.404;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 0/1:54,29:83:99:765,0,1480 1 95367894 rs859057 A C 249.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.358;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.129;SB=-2.203e+01;SOR=1.347;VQSLOD=9.91;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:278,0,233 1 95369211 rs859054 T G 1513.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-4.590e+02;SOR=2.303;VQSLOD=7.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1542,111,0 1 95427041 rs3831103 AT A 140.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.80;RPA=13,12;RU=T;ReadPosRankSum=0.515;SB=-2.006e+01;SOR=0.976;STR;VQSLOD=9.07;culprit=QD GT:AD:DP:GQ:PL 0/1:7,9:18:99:178,0,126 1 95428414 rs2766005 G A 708.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.539;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=3.443;HaplotypeScore=1.8519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=-0.476;SB=-1.762e+02;SOR=0.247;VQSLOD=10.17;culprit=SOR GT:AD:DP:GQ:PL 0/1:31,27:59:99:737,0,975 1 95428455 . C CT 732.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;DP=95;ExcessHet=3.0103;FS=5.229;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.52;RPA=15,16;RU=T;ReadPosRankSum=0.325;SB=-1.700e+02;SOR=1.409;STR;VQSLOD=5.89;culprit=QD GT:AD:DP:GQ:PL 0/1:41,45:95:99:770,0,674 1 95449033 rs2298162 T C 424.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.318;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.998;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=0.757;SB=-5.600e+01;SOR=1.845;VQSLOD=6.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,16:33:99:453,0,423 1 95615748 . C CT 334.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;DP=28;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;RPA=12,13;RU=T;ReadPosRankSum=-0.633;SB=-1.140e+02;SOR=1.112;STR;VQSLOD=7.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,16:28:99:372,0,173 1 95696612 rs6663164 C T 644.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.037;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=-1.115;SB=-2.220e+02;SOR=0.559;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:33,26:59:99:673,0,933 1 95700044 rs72966572 G C 216.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=-1.141;SB=0.00;SOR=0.976;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:245,0,197 1 95705615 rs640527 G A 960.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-1.533e+02;SOR=3.334;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:75:989,75,0 1 95709821 rs259358 T C 3304.77 PASS AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.25;SB=-2.037e+03;SOR=0.711;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,113:113:99:3333,244,0 1 95709939 rs2296308 T G 3392.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-2.049e+03;SOR=0.752;VQSLOD=7.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:3421,247,0 1 95710329 rs1062076 A G 319.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.114;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=10.160;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=1.022;SB=-2.657e-01;SOR=3.647;VQSLOD=5.35;culprit=FS GT:AD:DP:GQ:PL 0/1:12,10:22:99:348,0,301 1 96488081 rs161129 T C 927.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=-0.445;SB=-3.070e+02;SOR=0.874;VQSLOD=8.71;culprit=FS GT:AD:DP:GQ:PL 0/1:37,35:72:99:956,0,941 1 96488174 rs161128 A G 1031.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=0.188;SB=-5.990e+02;SOR=0.660;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:56,44:100:99:1060,0,1378 1 96488261 rs1146527 A T 1713.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-3.840e+02;SOR=2.917;VQSLOD=4.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1742,132,0 1 96488272 rs15686 C A 700.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.250;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=0.010;SB=-1.310e+02;SOR=0.788;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:24,26:50:99:729,0,608 1 96488283 rs1146528 T C 1412.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-1.573e+02;SOR=3.611;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1441,105,0 1 97189091 rs3762411 G A 1113.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.214;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.714;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=-0.301;SB=-7.460e+02;SOR=0.606;VQSLOD=9.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,49:110:99:1142,0,1683 1 97189288 rs3762410 T A 468.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.200;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=-0.066;SB=0.00;SOR=0.760;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:14,15:29:99:497,0,470 1 97278804 rs273886 G A 712.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.110;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.012;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-1.362;SB=-3.660e+02;SOR=0.796;VQSLOD=6.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,26:57:99:741,0,947 1 97547831 rs290854 G A 807.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.66;SB=-1.961e+02;SOR=2.494;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:63:836,63,0 1 97700589 rs12137711 C T 529.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.957;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=-0.332;SB=-2.040e+02;SOR=0.474;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:13,20:33:99:558,0,366 1 97771947 rs7556439 C A 247.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.951;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=0.800;SB=-9.732e-01;SOR=1.552;VQSLOD=6.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,9:17:99:276,0,208 1 97838887 rs11582179 T C 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.069;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=-1.607;SB=0.00;SOR=0.307;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:14,8:22:99:241,0,493 1 97981242 rs2811178 T C 406.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=0.00;SOR=4.977;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:435,33,0 1 97981243 rs2786783 G A 138.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=1.158;SB=0.00;SOR=0.551;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:167,0,187 1 97981395 rs1801159 T C 748.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.494;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=0.507;SB=-4.280e+02;SOR=0.763;VQSLOD=10.24;culprit=FS GT:AD:DP:GQ:PL 0/1:18,28:46:99:777,0,449 1 98144730 . G A 188.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-0.250;SB=-7.900e+01;SOR=1.179;VQSLOD=7.36;culprit=QD GT:AD:DP:GQ:PL 0/1:18,8:26:99:217,0,498 1 98165684 . A T 464.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.729;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.378;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.56;ReadPosRankSum=0.030;SB=-1.570e+02;SOR=1.034;VQSLOD=6.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,19:37:99:493,0,451 1 98348885 rs1801265 G A 922.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=3.880;HaplotypeScore=3.7218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=1.757;SB=-5.720e+02;SOR=0.951;VQSLOD=6.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,42:93:99:951,0,1190 1 98349390 . C CA 516.76 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.791;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.67;RPA=11,12;RU=A;ReadPosRankSum=-1.904;SB=-2.145e+02;SOR=1.179;STR;VQSLOD=9.46;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 1/1:2,23:26:22:554,22,0 1 98510326 rs114402789 G T 196.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=-0.561;SB=-1.765e+00;SOR=1.828;VQSLOD=8.42;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:225,0,204 1 98510679 rs367625650 G GAAAC 840.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;DB;DP=45;ExcessHet=3.0103;FS=4.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.76;RPA=6,7;RU=AAAC;ReadPosRankSum=0.876;SB=-4.290e+02;SOR=0.242;STR;VQSLOD=8.27;culprit=FS GT:AD:DP:GQ:PL 0/1:23,17:45:99:878,0,1157 1 98510847 rs74904371 C T 1291.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=5.637;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-1.150;SB=-8.030e+02;SOR=0.785;VQSLOD=4.17;culprit=FS GT:AD:DP:GQ:PL 0/1:60,56:116:99:1320,0,1436 1 99150635 rs9433747 G A 664.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.90;SB=-2.361e+02;SOR=1.708;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:51:693,51,0 1 99225627 rs2019213 G A 1923.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.71;SB=-1.105e+03;SOR=0.849;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:1952,144,0 1 99387628 rs34854879 T TA 1813.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.304;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.34;RPA=8,9;RU=A;ReadPosRankSum=0.108;SB=-4.240e+02;SOR=1.329;STR;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 1/1:1,63:73:99:1851,165,0 1 99418911 rs146451020 TTGTGTGTGTGTG TTGTGTGTGTGTGTGTG,T 3145.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.89;RPA=20,22,14;RU=TG;SB=-1.442e+02;SOR=5.353;STR;VQSLOD=4.49;culprit=FS GT:AD:DP:GQ:PL 1/2:0,9,20:50:99:3183,2762,3474,508,0,1679 1 99470269 rs12057990 T C 1129.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.732;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.122;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=-1.156;SB=-3.470e+02;SOR=0.983;VQSLOD=6.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,41:65:99:1158,0,579 1 100111956 rs834997 A G 515.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.457;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.06;ReadPosRankSum=0.371;SB=-1.850e+02;SOR=0.933;VQSLOD=8.87;culprit=QD GT:AD:DP:GQ:PL 0/1:41,23:64:99:544,0,1018 1 100127618 rs3766582 A G 135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-0.175;SB=-4.276e+01;SOR=0.120;VQSLOD=10.22;culprit=SOR GT:AD:DP:GQ:PL 0/1:6,5:11:99:164,0,201 1 100152443 rs1338576 T C 785.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.711;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.895;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-1.520;SB=-5.080e+02;SOR=0.557;VQSLOD=9.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,32:71:99:814,0,1057 1 100154554 rs35183456 C A 625.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.732;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.919;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.81;ReadPosRankSum=-0.284;SB=-4.100e+02;SOR=0.687;VQSLOD=6.83;culprit=QD GT:AD:DP:GQ:PL 0/1:44,27:71:99:654,0,1249 1 100181124 rs115494460 T A 466.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=0.941;SB=-2.640e+02;SOR=0.730;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:23,21:44:99:495,0,551 1 100182884 rs6696586 C T 680.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.04;SB=-6.397e+01;SOR=3.716;VQSLOD=7.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:709,54,0 1 100184963 rs71854810 C CA 207.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQ0=0;MQRankSum=-0.639;POSITIVE_TRAIN_SITE;QD=9.03;RPA=20,21;RU=A;ReadPosRankSum=-2.099;SB=-2.877e+01;SOR=0.527;STR;VQSLOD=2.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,15:24:75:245,0,75 1 100185282 rs6679013 G T 641.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.44;SB=-3.377e+01;SOR=4.407;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:670,51,0 1 100194305 rs7522921 C G 953.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-8.297e+01;SOR=4.332;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:72:982,72,0 1 100203501 rs7537095 C T 483.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.44;SB=0.00;SOR=5.283;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:512,39,0 1 100203571 rs7548709 A G 853.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-4.120e+02;SOR=1.220;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:63:882,63,0 1 100203597 rs7513916 G A 1220.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-6.560e+02;SOR=1.022;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:93:1249,93,0 1 100203648 rs7537296 C T 1951.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.50;SB=-1.054e+03;SOR=1.044;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:1980,147,0 1 100203693 rs7514021 G A 2253.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-1.147e+03;SOR=1.079;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2282,169,0 1 100203902 rs10875245 C T 213.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.572;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=1.372;SB=-4.276e+01;SOR=0.223;VQSLOD=9.71;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,8:15:99:242,0,243 1 100207818 rs41285734 C G 482.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.506;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.652;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=1.184;SB=-2.370e+02;SOR=1.161;VQSLOD=7.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,20:42:99:511,0,550 1 100214391 rs1416237 T A 812.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;SB=-3.577e+01;SOR=4.804;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:63:841,63,0 1 100316589 rs2307130 A G 1231.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=-4.680e+02;SOR=1.609;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:41:93:1260,93,0 1 100316765 rs663848 C T 1182.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-3.940e+02;SOR=2.191;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:90:1211,90,0 1 100318092 rs58176899 A AT 135.74 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.34;MQ0=0;MQRankSum=-0.349;POSITIVE_TRAIN_SITE;QD=12.34;RPA=20,21;RU=T;ReadPosRankSum=-1.501;SB=-2.777e+01;SOR=0.693;STR;VQSLOD=3.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,8:16:25:173,0,25 1 100329889 rs535461 G C 2084.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.36;SB=-7.170e+02;SOR=2.206;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2113,154,0 1 100335883 rs903126 A G 1000.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.36;SB=-8.297e+01;SOR=4.548;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:84:1029,84,0 1 100336361 rs2230306 C T 1162.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-7.380e+02;SOR=0.693;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:87:1191,87,0 1 100340225 rs634880 G A 1698.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.29;SB=-7.200e+02;SOR=1.609;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1727,126,0 1 100342227 rs3736295 C T 700.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.032;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.537;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=0.290;SB=-8.900e+01;SOR=1.244;VQSLOD=7.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,24:49:99:729,0,723 1 100343073 rs2291637 T A 306.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.743;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=-0.041;SB=0.00;SOR=0.793;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:335,0,284 1 100345409 rs2392077 C G 133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.36;ReadPosRankSum=-0.795;SB=-1.765e+00;SOR=0.784;VQSLOD=9.40;culprit=QD GT:AD:DP:GQ:PL 0/1:11,5:16:99:162,0,330 1 100346741 rs3736296 T C 1320.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.237;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=3.681;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=2.182;SB=-7.430e+02;SOR=0.856;VQSLOD=6.30;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:49,52:101:99:1349,0,1315 1 100350383 rs2234707 G A 328.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.575;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.26;ReadPosRankSum=-2.084;SB=0.00;SOR=1.179;VQSLOD=9.00;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,11:18:99:357,0,230 1 100353675 rs555929 G A 2126.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.727;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=2.952;HaplotypeScore=1.4972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=-0.079;SB=-9.110e+02;SOR=1.028;VQSLOD=7.64;culprit=DP GT:AD:DP:GQ:PL 0/1:73,82:155:99:2155,0,2010 1 100357041 rs2035960 A G 51.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=10.170;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.70;ReadPosRankSum=0.701;SB=-3.436e-02;SOR=2.797;VQSLOD=4.69;culprit=QD GT:AD:DP:GQ:PL 0/1:11,3:14:80:80,0,367 1 100357141 rs2035961 T A 292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.340;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-0.185;SB=-6.400e+01;SOR=0.602;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:12,11:23:99:321,0,376 1 100358200 rs594249 G A 620.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.427;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.958;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.24;ReadPosRankSum=0.143;SB=-6.500e+01;SOR=1.453;VQSLOD=6.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,20:36:99:649,0,468 1 100435079 rs2274569 T C 1600.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.682;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=0.034;SB=-8.780e+02;SOR=0.841;VQSLOD=7.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,67:126:99:1629,0,1438 1 100436133 rs11166383 A G 868.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.595;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.066;HaplotypeScore=1.8316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=1.435;SB=-2.640e+02;SOR=0.960;VQSLOD=7.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,31:60:99:897,0,837 1 100472604 rs534252 A G 764.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.516;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=1.888;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=0.030;SB=-4.720e+02;SOR=0.495;VQSLOD=9.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,33:79:99:793,0,1214 1 100476815 rs12121705 T G 99.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.513;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.07;ReadPosRankSum=-0.269;SB=0.00;SOR=0.330;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:7,4:11:99:128,0,235 1 100481062 rs3835492 AG A 490.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;DB;DP=38;ExcessHet=3.0103;FS=2.200;MLEAC=1;MLEAF=0.500;MQ=60.57;MQ0=0;MQRankSum=1.518;POSITIVE_TRAIN_SITE;QD=14.02;RPA=5,4;RU=G;ReadPosRankSum=-0.595;SB=-6.900e+01;SOR=0.301;STR;VQSLOD=0.241;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,17:38:99:528,0,576 1 100488177 rs482466 C T 384.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.436;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.519;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=0.353;SB=-1.330e+02;SOR=0.420;VQSLOD=9.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,16:37:99:413,0,623 1 100503892 rs80339334 G C 469.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.39;ReadPosRankSum=-0.320;SB=-2.100e+02;SOR=0.709;VQSLOD=8.33;culprit=QD GT:AD:DP:GQ:PL 0/1:37,19:56:99:498,0,955 1 100503993 rs1395332 A C 206.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.221;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=0.772;SB=-7.300e+01;SOR=0.346;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:235,0,205 1 100524336 rs12119548 C T 452.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.821;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.500;HaplotypeScore=1.8835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.072;SB=-1.880e+02;SOR=0.361;VQSLOD=9.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,17:34:99:481,0,452 1 100542638 rs6699449 G A 118.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.707;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=-0.192;SB=0.00;SOR=0.307;VQSLOD=10.02;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:14:99:147,0,279 1 100584746 rs6662945 A C 653.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.310;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=-0.135;SB=-6.400e+01;SOR=0.804;VQSLOD=10.23;culprit=FS GT:AD:DP:GQ:PL 0/1:19,21:40:99:682,0,519 1 100588090 rs368367680 G T 156.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=21.3767;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=0;MQRankSum=-2.029;QD=4.24;ReadPosRankSum=2.062;SB=-1.765e+00;SOR=0.733;VQSLOD=1.50;culprit=QD GT:AD:DP:GQ:PL 0/1:25,12:37:99:185,0,550 1 100588105 rs71075469 C CT 76.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=0.073;POSITIVE_TRAIN_SITE;QD=3.84;RPA=21,22;RU=T;ReadPosRankSum=-1.364;SB=0.00;SOR=0.693;STR;VQSLOD=3.11;culprit=QD GT:AD:DP:GQ:PL 0/1:10,10:27:99:114,0,125 1 100598299 rs11166405 A G 2118.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.365;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=2.106;HaplotypeScore=2.8817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=-0.149;SB=-1.214e+03;SOR=0.503;VQSLOD=8.04;culprit=DP GT:AD:DP:GQ:PL 0/1:69,82:152:99:2147,0,1770 1 100598866 rs472498 G A 862.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.349;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.725;HaplotypeScore=4.6450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-0.563;SB=-1.610e+02;SOR=1.347;VQSLOD=7.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,31:62:99:891,0,857 1 100598867 rs687513 C T 830.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.956;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.261;HaplotypeScore=4.6450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=-0.765;SB=-1.540e+02;SOR=1.179;VQSLOD=7.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,31:61:99:859,0,788 1 100605301 rs187743332 G T 277.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.511;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.617;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=-0.138;SB=-1.740e+02;SOR=0.330;VQSLOD=9.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,13:28:99:306,0,420 1 100617887 rs2784177 C T 329.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.631;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=-0.492;SB=-4.700e+01;SOR=0.631;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:19,14:33:99:358,0,547 1 100623922 rs12122948 T C 1342.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.868;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=1.765;HaplotypeScore=4.4694;MLEAC=1;MLEAF=0.500;MQ=59.99;MQ0=0;MQRankSum=-0.889;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-1.000;SB=-5.930e+02;SOR=0.517;VQSLOD=0.573;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,57:104:99:1371,0,1203 1 100671628 rs35150096 TA T 113.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.726;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.69;RPA=18,17;RU=A;ReadPosRankSum=2.085;SB=0.00;SOR=1.127;STR;VQSLOD=8.20;culprit=QD GT:AD:DP:GQ:PL 0/1:8,12:20:99:151,0,128 1 100672060 rs12021720 T C 1649.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=2.672;HaplotypeScore=4.8374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=0.638;SB=-9.550e+02;SOR=0.642;VQSLOD=7.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,59:99:99:1678,0,976 1 100680593 . C CT 174.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQ0=0;MQRankSum=1.615;POSITIVE_TRAIN_SITE;QD=6.72;RPA=14,15;RU=T;ReadPosRankSum=-0.541;SB=-2.104e+01;SOR=1.071;STR;VQSLOD=3.01;culprit=QD GT:AD:DP:GQ:PL 0/1:14,12:36:99:212,0,195 1 100715454 rs3806235 G A 2359.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;SB=-5.780e+02;SOR=2.568;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2388,187,0 1 100731819 rs11406239 C CA 496.73 PASS AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.90;SB=0.00;SOR=5.136;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:534,36,0 1 100731820 rs57327535 G A 439.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=39.66;SB=0.00;SOR=5.136;VQSLOD=7.63;culprit=QD GT:AD:DP:GQ:PL 1/1:0,12:12:36:468,36,0 1 100733207 . G GT 844.74 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQ0=0;MQRankSum=0.608;POSITIVE_TRAIN_SITE;QD=18.77;RPA=14,15;RU=T;ReadPosRankSum=-0.234;SB=-3.328e+02;SOR=0.733;STR;VQSLOD=3.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,39:55:0:879,0,0 1 100733552 rs4298755 T C 775.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.42;SB=-8.297e+01;SOR=3.816;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:804,60,0 1 100742670 rs4495726 A G 1000.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.51;SB=0.00;SOR=6.804;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:87:1029,87,0 1 100743078 rs4433415 A G 416.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=0.00;SOR=4.977;VQSLOD=7.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:445,33,0 1 100750733 rs58046505 AGTTTT A 6875.73 PASS AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.06;RPA=6,5;RU=GTTTT;SB=-1.399e+03;SOR=2.707;STR;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,107:113:99:6913,322,0 1 100751055 rs10875286 G C 533.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.66;SB=0.00;SOR=5.421;VQSLOD=8.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:562,42,0 1 100818464 rs594529 T C 1299.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-6.600e+02;SOR=1.151;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:96:1328,96,0 1 100961419 rs2270692 A G 548.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.53;SB=0.00;SOR=5.421;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:577,42,0 1 100963418 rs904296 T G 469.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-1.225e+02;SOR=2.448;VQSLOD=5.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:498,39,0 1 100963479 rs35904273 CAG C 779.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;DB;DP=33;ExcessHet=3.0103;FS=3.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.63;RPA=2,1;RU=AG;ReadPosRankSum=0.036;SB=-2.330e+02;SOR=1.387;STR;VQSLOD=5.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,17:33:99:817,0,756 1 100970346 rs10875295 T C 447.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.231;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=0.352;SB=-2.900e+02;SOR=0.602;VQSLOD=10.16;culprit=FS GT:AD:DP:GQ:PL 0/1:19,20:39:99:476,0,399 1 101005090 rs2809819 G A 571.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.743;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=-0.410;SB=-3.630e+02;SOR=0.743;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:17,24:41:99:600,0,456 1 101189027 rs1476408 C G 1153.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.14;SB=-1.055e+02;SOR=4.047;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:87:1182,87,0 1 101203827 rs3176879 G A 2655.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-1.589e+03;SOR=0.788;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2684,199,0 1 101372607 rs4908106 C A 408.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.50;SB=0.00;SOR=4.977;VQSLOD=7.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:437,33,0 1 101458362 rs374397647 A G 759.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.950;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.10;ReadPosRankSum=0.661;SB=-2.820e+02;SOR=0.544;VQSLOD=8.35;culprit=FS GT:AD:DP:GQ:PL 0/1:29,29:58:99:788,0,755 1 102271774 rs4907955 G A 2091.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.499;DB;DP=185;Dels=0.00;ExcessHet=3.0103;FS=1.187;HaplotypeScore=1.8910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.805;SB=-1.094e+03;SOR=0.581;VQSLOD=7.38;culprit=DP GT:AD:DP:GQ:PL 0/1:100,85:185:99:2120,0,2519 1 102278477 . T C 527.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.658;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.99;ReadPosRankSum=0.000;SB=-3.101e+01;SOR=0.392;VQSLOD=8.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,18:44:99:556,0,841 1 103354115 rs17127203 T C 1541.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-8.760e+02;SOR=1.094;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1570,114,0 1 103356107 rs11164634 A G 469.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.36;SB=-1.653e+02;SOR=2.049;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:36:498,36,0 1 103381129 rs4908273 C T 963.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=-3.450e+02;SOR=1.911;VQSLOD=7.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:75:992,75,0 1 103400491 . G A 627.77 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.89;SB=-1.573e+02;SOR=2.636;VQSLOD=5.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:51:656,51,0 1 103400492 rs11164642 A T 685.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-1.603e+02;SOR=2.737;VQSLOD=5.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:54:714,54,0 1 103428389 rs1841834 G A 912.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-2.730e+02;SOR=2.226;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:941,72,0 1 103444679 rs11164649 T G 1420.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.32;SB=-1.014e+03;SOR=0.693;VQSLOD=5.97;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,52:52:99:1449,102,0 1 103455217 rs1463034 C T 1135.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=-1.971e+02;SOR=2.964;VQSLOD=6.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:87:1164,87,0 1 103461508 rs2622867 T A 620.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=-2.291e+02;SOR=1.828;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:48:649,48,0 1 103463976 rs2622870 G T 1886.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-5.050e+02;SOR=2.507;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1915,141,0 1 103464061 rs10874672 T A 472.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.05;SB=0.00;SOR=5.283;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:501,39,0 1 103467615 rs2929162 C T 1331.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-1.573e+02;SOR=4.073;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1360,108,0 1 103468609 rs2251895 A G 1257.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;SB=-4.730e+02;SOR=1.788;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:96:1286,96,0 1 103468855 TMP_ESP_1_103468855 TAA T 207.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.66;RPA=12,10;RU=A;ReadPosRankSum=-0.268;SB=-2.402e+01;SOR=1.071;STR;VQSLOD=7.52;culprit=QD GT:AD:DP:GQ:PL 0/1:15,9:28:99:245,0,356 1 103471456 rs71752747 CCAT C 2930.73 PASS AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.56;RPA=10,9;RU=CAT;SB=-1.367e+03;SOR=0.841;STR;VQSLOD=5.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:69:99:2968,169,0 1 103471734 . A AAAATAAAT 2698.73 PASS AC=2;AF=1.00;AN=2;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.90;RPA=7,9;RU=AAAT;SB=-1.179e+03;SOR=1.071;STR;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:48:86:2736,86,0 1 103483514 rs945748 C T 1411.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.61;SB=-2.740e+02;SOR=3.056;VQSLOD=7.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1440,108,0 1 103487394 rs35291481 CT C 491.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.240;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.35;RPA=11,10;RU=T;ReadPosRankSum=1.341;SB=-2.977e+01;SOR=3.352;STR;VQSLOD=5.18;culprit=FS GT:AD:DP:GQ:PL 1/1:1,21:28:57:529,57,0 1 103496620 rs7523441 G T 1346.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.67;SB=-3.650e+02;SOR=1.981;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1375,102,0 1 103496805 rs36076089 GA G 388.73 PASS AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.60;RPA=13,12;RU=A;SB=0.00;SOR=5.892;STR;VQSLOD=4.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:22:53:426,53,0 1 103548319 rs11164662 C G 1270.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-1.393e+02;SOR=3.383;VQSLOD=5.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:96:1299,96,0 1 103573547 rs6691654 G A 985.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=-3.020e+02;SOR=2.019;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:31:78:1014,78,0 1 104078166 . C T 489.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.942;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.89;ReadPosRankSum=0.864;SB=-1.060e+02;SOR=0.716;VQSLOD=8.43;culprit=FS GT:AD:DP:GQ:PL 0/1:12,17:29:99:518,0,364 1 104080169 rs10736038 G C 1695.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.00;SB=-5.660e+02;SOR=1.938;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1724,129,0 1 104084226 rs10881232 A G 708.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.75;SB=-1.195e+02;SOR=2.636;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:737,54,0 1 104086145 rs10785725 A G 508.56 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.337;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.12;ReadPosRankSum=0.237;SB=-1.591e+02;SOR=0.836;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 1/1:1,21:22:7:536,7,0 1 104087734 . C T 648.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.80;ReadPosRankSum=-0.928;SB=-3.360e+02;SOR=0.732;VQSLOD=8.32;culprit=FS GT:AD:DP:GQ:PL 0/1:22,25:47:99:677,0,527 1 104089773 rs7529928 C G 414.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.56;SB=-3.876e+01;SOR=3.611;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:443,33,0 1 107599258 rs2232015 A T 299.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.346;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=-0.163;SB=0.00;SOR=0.793;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:328,0,278 1 107946262 rs12126267 G A 228.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.823;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=0.250;SB=0.00;SOR=0.976;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:257,0,191 1 107946324 . CA C 268.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.204;DP=44;ExcessHet=3.0103;FS=2.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.40;RPA=16,15;RU=A;ReadPosRankSum=2.759;SB=-7.703e+01;SOR=1.501;STR;VQSLOD=4.14;culprit=QD GT:AD:DP:GQ:PL 0/1:20,22:44:99:306,0,315 1 107979396 rs480392 A C 2357.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.11;SB=-1.420e+03;SOR=0.995;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2386,169,0 1 108002921 rs78047373 G C 385.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.908;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=-1.578;SB=-1.940e+02;SOR=0.684;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:21,18:39:99:414,0,625 1 108023589 rs4915045 A C 622.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.095;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=0.477;SB=-3.310e+02;SOR=0.885;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:28,24:52:99:651,0,805 1 108139003 rs3748702 C T 560.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.521;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.209;SB=-1.940e+02;SOR=0.906;VQSLOD=10.23;culprit=FS GT:AD:DP:GQ:PL 0/1:19,22:41:99:589,0,533 1 108152231 rs1328209 G T 244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.010;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=0.580;SB=-4.076e+01;SOR=0.446;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:273,0,163 1 108152332 rs1328208 T A 413.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.875;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=5.329;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=-1.131;SB=-2.050e+02;SOR=0.204;VQSLOD=9.10;culprit=FS GT:AD:DP:GQ:PL 0/1:21,17:38:99:442,0,599 1 108152630 rs2296877 G T 372.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.533;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=8.827;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=0.498;SB=-1.352e-01;SOR=3.352;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 0/1:20,13:33:99:401,0,542 1 108292260 rs6672483 A G 1175.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.59;SB=-2.091e+02;SOR=2.964;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:87:1204,87,0 1 108299775 . ATGTG A 1766.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=0.693;POSITIVE_TRAIN_SITE;QD=20.08;RPA=17,15;RU=TG;ReadPosRankSum=-0.738;SB=-1.090e+02;SOR=0.758;STR;VQSLOD=3.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,34:69:99:1804,0,1536 1 108300141 rs11808011 T C 163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.521;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=-1.028;SB=0.00;SOR=0.425;VQSLOD=10.15;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:192,0,347 1 108307642 rs7514025 C T 345.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=0.00;SOR=4.804;VQSLOD=8.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:374,30,0 1 108307727 rs7528153 T A 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.41;ReadPosRankSum=-0.738;SB=-8.800e+01;SOR=0.693;VQSLOD=8.79;culprit=QD GT:AD:DP:GQ:PL 0/1:16,10:26:99:247,0,420 1 108313258 rs6583048 C T 488.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.44;SB=-3.770e+02;SOR=0.693;VQSLOD=4.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:36:517,36,0 1 108315305 rs4611048 C T 1094.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;SB=-4.200e+02;SOR=1.547;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:87:1123,87,0 1 108507541 rs71796067 GGCC G 711.73 PASS AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.77;RPA=6,5;RU=GCC;SB=0.00;SOR=5.421;STR;VQSLOD=8.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:22:42:749,42,0 1 108697845 rs7555964 C G 335.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=1.454;SB=0.00;SOR=0.446;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:15,11:26:99:364,0,483 1 108724518 rs490680 A G 546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.938;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=6.929;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=0.371;SB=-7.200e+01;SOR=1.989;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 0/1:33,19:52:99:575,0,893 1 108724693 rs491785 G A 360.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.970;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.188;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=0.518;SB=-9.732e-01;SOR=2.448;VQSLOD=6.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,12:25:99:389,0,366 1 108742844 rs143785326 G A 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.484;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=0.709;SB=0.00;SOR=1.329;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:317,0,154 1 108766133 rs3870737 A G 109.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.005;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.32;MQ0=2;MQRankSum=-0.644;POSITIVE_TRAIN_SITE;QD=6.10;ReadPosRankSum=1.418;SB=-1.765e+00;SOR=0.784;VQSLOD=3.07;culprit=QD GT:AD:DP:GQ:PL 0/1:13,5:18:99:138,0,321 1 108766424 rs3879436 A G 609.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.724;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.892;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.20;MQ0=0;MQRankSum=0.359;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-0.706;SB=-2.420e+02;SOR=0.361;VQSLOD=0.032;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,25:46:99:638,0,601 1 109103207 rs72978732 G T 777.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.542;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=10.596;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.45;ReadPosRankSum=-2.078;SB=-1.250e+02;SOR=1.921;VQSLOD=4.47;culprit=FS GT:AD:DP:GQ:PL 0/1:61,31:92:99:806,0,1637 1 109143457 rs7534348 A G 334.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-2.013;SB=-3.101e+01;SOR=0.616;VQSLOD=9.93;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:13,12:25:99:363,0,405 1 109154974 rs2358522 G A 529.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.811;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=4.357;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-1.108;SB=-1.661e+02;SOR=0.133;VQSLOD=10.13;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,21:36:99:558,0,469 1 109170746 rs2133198 C T 520.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.013;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-1.037;SB=-9.300e+01;SOR=0.882;VQSLOD=7.80;culprit=FS GT:AD:DP:GQ:PL 0/1:30,19:49:99:549,0,852 1 109173710 rs17025410 G A 779.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.828;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=1.140;SB=-2.030e+02;SOR=0.748;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:15,29:44:99:808,0,386 1 109241669 rs2297563 G A 187.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.165;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.757;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=-0.413;SB=-3.677e+01;SOR=0.105;VQSLOD=9.87;culprit=SOR GT:AD:DP:GQ:PL 0/1:11,8:19:99:216,0,393 1 109255513 rs3006864 G T 2531.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.77;SB=-1.269e+03;SOR=1.382;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2560,184,0 1 109260357 rs4970804 G A 1683.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.02;SB=-4.290e+02;SOR=2.540;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1712,129,0 1 109261321 . T TA 135.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.70;RPA=1,2;RU=A;ReadPosRankSum=-0.975;SB=0.00;SOR=0.307;STR;VQSLOD=8.37;culprit=FS GT:AD:DP:GQ:PL 0/1:9,5:14:99:173,0,339 1 109265029 rs4423040 G T 2313.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.92;SB=-1.327e+03;SOR=0.908;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2342,169,0 1 109265326 rs4970743 G C 1097.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.27;SB=-7.897e+01;SOR=4.743;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:93:1126,93,0 1 109268441 rs11582005 G A 2789.77 PASS AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=-1.573e+03;SOR=0.852;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:93:99:2818,208,0 1 109268573 rs4494160 T C 3354.77 PASS AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-2.117e+03;SOR=0.729;VQSLOD=5.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,112:112:99:3383,247,0 1 109270402 rs10494096 G A 4646.77 PASS AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.19;SB=-1.162e+03;SOR=2.551;VQSLOD=6.71;culprit=DP GT:AD:DP:GQ:PL 1/1:0,140:140:99:4675,349,0 1 109273456 rs4970809 A G 1938.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.83;SB=-1.172e+03;SOR=0.854;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:1967,144,0 1 109273610 rs4970810 G A 657.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;SB=-1.881e+02;SOR=2.093;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:51:686,51,0 1 109289487 rs6604120 C T 458.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-2.261e+02;SOR=1.112;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:487,36,0 1 109299453 rs1277044 C G 1250.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=-2.920e+02;SOR=2.774;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:93:1279,93,0 1 109301250 rs1277042 G C 749.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.43;SB=-5.550e+02;SOR=0.818;VQSLOD=3.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:54:778,54,0 1 109315211 rs1623641 A G 417.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=0.00;SOR=4.977;VQSLOD=7.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:446,33,0 1 109321824 rs1759481 G T 1260.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-1.155e+02;SOR=4.461;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1289,105,0 1 109336411 rs1277016 G A 427.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SB=0.00;SOR=5.136;VQSLOD=8.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:456,36,0 1 109338861 rs1127635 G C 841.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-3.960e+02;SOR=1.179;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:63:870,63,0 1 109350198 rs375887364 GT G 127.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;DB;DP=67;ExcessHet=3.0103;FS=3.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.41;RPA=17,16;RU=T;ReadPosRankSum=0.159;SB=-4.848e+00;SOR=0.109;STR;VQSLOD=4.28;culprit=QD GT:AD:DP:GQ:PL 0/1:36,17:67:99:165,0,679 1 109358755 . A AT 3215.74 PASS AC=2;AF=1.00;AN=2;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.63;RPA=7,8;RU=T;SB=-1.196e+03;SOR=1.336;STR;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:108:99:3253,316,0 1 109372876 rs1277222 G A 726.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.61;SB=-2.031e+02;SOR=2.200;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:57:755,57,0 1 109372968 rs1277221 T G 2111.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.06;SB=-8.930e+02;SOR=1.644;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2140,166,0 1 109373446 rs1277220 G A 511.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.73;SB=0.00;SOR=5.421;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:540,42,0 1 109377157 rs5776950 TA T 356.74 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.375;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;MQRankSum=0.471;POSITIVE_TRAIN_SITE;QD=18.78;RPA=13,12;RU=A;ReadPosRankSum=-1.371;SB=-1.810e+02;SOR=0.317;STR;VQSLOD=3.68;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,18:23:27:394,27,0 1 109391486 rs1149142 G A 1795.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=-8.030e+02;SOR=1.382;VQSLOD=8.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1824,141,0 1 109395105 rs1277207 C T 2744.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.89;SB=-1.816e+03;SOR=0.714;VQSLOD=7.10;culprit=DP GT:AD:DP:GQ:PL 1/1:0,95:95:99:2773,202,0 1 109474250 . TA T 83.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;DP=38;ExcessHet=3.0103;FS=2.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.54;RPA=15,14;RU=A;ReadPosRankSum=0.768;SB=-5.150e-01;SOR=1.460;STR;VQSLOD=4.48;culprit=QD GT:AD:DP:GQ:PL 0/1:24,9:38:99:121,0,488 1 109482572 . C T 180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.08;ReadPosRankSum=0.608;SB=-1.765e+00;SOR=2.584;VQSLOD=4.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,6:10:97:209,0,97 1 109529322 . T TAA 1484.73 PASS AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.24;RPA=1,3;RU=A;SB=-2.243e+02;SOR=3.477;STR;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:33:93:1522,93,0 1 109534940 rs337296 G A 778.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=2;POSITIVE_TRAIN_SITE;QD=24.34;SB=-2.790e+02;SOR=2.303;VQSLOD=3.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:66:807,66,0 1 109545046 rs184606 C T 1335.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.39;SB=-1.513e+02;SOR=4.021;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1364,108,0 1 109618257 rs673365 C T 856.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-3.140e+02;SOR=1.942;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:69:885,69,0 1 109618308 rs34069017 G A 687.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.166;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-1.375;SB=-2.200e+02;SOR=1.134;VQSLOD=7.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,25:52:99:716,0,691 1 109635398 rs512671 A G 462.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=9.298;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-1.035;SB=-5.300e+01;SOR=2.775;VQSLOD=5.31;culprit=FS GT:AD:DP:GQ:PL 0/1:17,17:34:99:491,0,377 1 109643380 rs534027 G C 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.370;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.38;ReadPosRankSum=-1.689;SB=0.00;SOR=0.350;VQSLOD=8.96;culprit=QD GT:AD:DP:GQ:PL 0/1:16,10:26:99:246,0,561 1 109648870 rs533212 C G 171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=1.008;SB=0.00;SOR=0.473;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:200,0,284 1 109650386 rs75965052 T C 205.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=-1.764;SB=-3.001e+01;SOR=0.627;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:234,0,152 1 109650484 . G GA 329.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.45;RPA=13,14;RU=A;ReadPosRankSum=-0.869;SB=-1.140e+02;SOR=0.986;STR;VQSLOD=9.08;culprit=QD GT:AD:DP:GQ:PL 0/1:21,18:40:99:367,0,277 1 109656420 rs536176 T C 189.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=0.093;SB=-9.732e-01;SOR=2.517;VQSLOD=5.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,8:17:99:218,0,204 1 109656946 rs667524 T C 884.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.706;SB=-5.590e+02;SOR=0.662;VQSLOD=8.69;culprit=FS GT:AD:DP:GQ:PL 0/1:46,37:83:99:913,0,1186 1 109656981 rs586530 T C 827.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.814;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-1.211;SB=-5.080e+02;SOR=0.777;VQSLOD=8.21;culprit=FS GT:AD:DP:GQ:PL 0/1:40,35:75:99:856,0,1000 1 109704390 rs643197 C G 1544.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-4.800e+02;SOR=2.303;VQSLOD=5.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1573,123,0 1 109704618 rs678238 A G 2457.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-9.610e+02;SOR=1.639;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2486,181,0 1 109714403 rs17014495 C A 473.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.04;SB=0.00;SOR=5.283;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:502,39,0 1 109714750 rs2297758 T C 737.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.51;SB=-1.603e+02;SOR=2.584;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:57:766,57,0 1 109716149 rs199660944 A T 1410.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=1.468;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.02;ReadPosRankSum=-1.675;SB=-6.060e+02;SOR=0.859;VQSLOD=5.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:73,55:128:99:1439,0,1912 1 109716624 rs373890997 T TAATCA 1057.73 PASS AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.32;RPA=1,2;RU=AATCA;SB=0.00;SOR=5.549;STR;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:1095,45,0 1 109727422 rs12239846 A G 226.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.477;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=0.980;SB=0.00;SOR=0.346;VQSLOD=9.99;culprit=FS GT:AD:DP:GQ:PL 0/1:13,8:21:99:255,0,430 1 109727475 rs649531 T C 1319.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.69;SB=-1.583e+02;SOR=3.855;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1348,102,0 1 109727529 rs12036884 G A 1121.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.718;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.091;HaplotypeScore=6.3137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.09;ReadPosRankSum=0.729;SB=-5.560e+02;SOR=0.532;VQSLOD=9.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,44:62:99:1150,0,485 1 109732080 rs603285 C T 795.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.16;SB=-2.720e+02;SOR=1.802;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:824,66,0 1 109734157 rs606066 T C 1236.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.35;SB=-3.610e+02;SOR=2.179;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:90:1265,90,0 1 109734225 rs643785 G T 1093.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.87;SB=-5.480e+02;SOR=0.760;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:87:1122,87,0 1 109734541 rs645128 C T 1928.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.69;SB=-5.060e+02;SOR=2.507;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1957,147,0 1 109735298 rs658779 T C 2402.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.03;SB=-1.115e+03;SOR=1.236;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2431,178,0 1 109735416 rs659543 A C 2411.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-1.323e+03;SOR=1.058;VQSLOD=7.03;culprit=DP GT:AD:DP:GQ:PL 1/1:0,81:81:99:2440,178,0 1 109735504 rs659659 T C 1345.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.51;SB=-2.431e+02;SOR=3.202;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1374,99,0 1 109737063 rs2359246 C T 1577.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-4.590e+02;SOR=2.348;VQSLOD=7.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1606,123,0 1 109737090 rs2359245 G A 2180.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;SB=-7.410e+02;SOR=1.819;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2209,166,0 1 109737132 rs2359244 T C 2721.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.95;SB=-1.382e+03;SOR=1.143;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:2750,202,0 1 109737172 rs2359243 C T 2832.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.05;SB=-1.883e+03;SOR=0.795;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:2861,211,0 1 109737314 rs2359242 T C 1179.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;SB=-3.250e+02;SOR=2.494;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:87:1208,87,0 1 109737320 rs2359241 G A 1084.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-2.560e+02;SOR=2.584;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:35:81:1113,81,0 1 109740310 . A AGAGAGAGTGT 1922.73 PASS AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=64.48;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.84;SB=0.00;SOR=6.091;VQSLOD=7.96;culprit=DP GT:AD:DP:GQ:PL 1/1:0,20:21:60:1960,60,0 1 109740473 rs3818508 C T 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.366;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=-1.258;SB=-4.076e+01;SOR=0.141;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:202,0,240 1 109740548 rs2296696 G T 1568.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-3.600e+02;SOR=2.786;VQSLOD=7.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1597,120,0 1 109741516 rs10858081 A C 429.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-8.197e+01;SOR=2.985;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:458,36,0 1 109742452 rs913178 C T 807.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.94;SB=0.00;SOR=6.184;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:836,63,0 1 109742485 rs913179 G A 1672.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.04;SB=-1.215e+02;SOR=4.804;VQSLOD=5.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1701,129,0 1 109745618 rs1052878 T C 2659.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-1.031e+03;SOR=1.725;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2688,193,0 1 109771063 rs683182 T C 1228.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.052;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=5.185;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=-0.253;SB=-3.870e+02;SOR=1.263;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 0/1:60,45:105:99:1257,0,1487 1 109771881 rs657511 G T 494.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.04;SB=0.00;SOR=5.421;VQSLOD=7.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:523,42,0 1 109774621 rs2281895 C A 301.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.250;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=1.276;SB=-3.100e+01;SOR=1.061;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:13,11:24:99:330,0,423 1 109778577 rs658092 T C 1140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.500;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=1.902;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-0.297;SB=-5.000e+02;SOR=0.466;VQSLOD=10.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,45:92:99:1169,0,1177 1 109779556 rs631927 T A 1841.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.49;SB=-9.530e+02;SOR=0.884;VQSLOD=4.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1870,138,0 1 109779621 . T TC 443.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;DP=47;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.44;RPA=1,2;RU=C;ReadPosRankSum=0.221;SB=-1.940e+02;SOR=0.906;STR;VQSLOD=7.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,14:47:99:481,0,1307 1 109794252 rs454107 T C 6389.77 PASS AC=2;AF=1.00;AN=2;DB;DP=195;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5456;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.77;SB=-3.228e+03;SOR=1.115;VQSLOD=4.82;culprit=DP GT:AD:DP:GQ:PL 1/1:0,195:195:99:6418,491,0 1 109795026 rs413380 T C 7611.77 PASS AC=2;AF=1.00;AN=2;DB;DP=230;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SB=-4.159e+03;SOR=0.711;VQSLOD=4.88;culprit=DP GT:AD:DP:GQ:PL 1/1:0,230:230:99:7640,581,0 1 109795608 rs437444 T C 6662.77 PASS AC=2;AF=1.00;AN=2;DB;DP=203;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.82;SB=-3.363e+03;SOR=1.151;VQSLOD=6.28;culprit=DP GT:AD:DP:GQ:PL 1/1:0,203:203:99:6691,491,0 1 109796053 rs2359414 C T 1409.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.06;SB=-6.797e+01;SOR=5.031;VQSLOD=4.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1438,111,0 1 109810544 rs2281894 C A 3378.77 PASS AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.16;SB=-2.253e+03;SOR=0.761;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,120:120:99:3407,244,0 1 109814880 rs4970834 C T 766.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.812;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=1.939;SB=-2.890e+02;SOR=0.788;VQSLOD=8.26;culprit=FS GT:AD:DP:GQ:PL 0/1:29,31:60:99:795,0,830 1 109815252 rs611917 A G 806.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.261;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=1.980;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=-0.436;SB=-3.310e+02;SOR=0.945;VQSLOD=7.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,34:77:99:835,0,1213 1 109816176 rs441853 A C 3588.77 PASS AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3913;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.16;SB=-1.432e+03;SOR=1.883;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,119:119:99:3617,277,0 1 109824250 rs35358959 G A 1522.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.814;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=1.595;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=0.955;SB=-8.600e+02;SOR=0.836;VQSLOD=7.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,59:104:99:1551,0,1245 1 109825360 rs643457 C T 351.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=0.00;SOR=4.804;VQSLOD=7.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:380,30,0 1 109836842 rs646335 C G 2549.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7129;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.33;SB=-1.467e+03;SOR=0.883;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2578,187,0 1 109838116 rs632514 C T 995.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-1.911e+02;SOR=3.056;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:81:1024,81,0 1 109838833 rs616899 T C 1700.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-1.761e+02;SOR=3.912;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1729,129,0 1 109838918 rs629001 C T 4075.77 PASS AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.11;SB=-2.241e+03;SOR=1.132;VQSLOD=5.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,145:146:99:4104,295,0 1 109839063 . AT A 643.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;DP=68;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.50;RPA=15,14;RU=T;ReadPosRankSum=0.528;SB=-1.410e+02;SOR=1.112;STR;VQSLOD=7.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,40:68:99:681,0,238 1 109839392 rs604349 A G 794.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.640;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.075;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.014;SB=-3.050e+02;SOR=1.179;VQSLOD=7.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,33:63:99:823,0,756 1 109839400 rs55660224 C T 711.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=2.190;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=0.839;SB=-3.730e+02;SOR=0.361;VQSLOD=9.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,31:69:99:740,0,1003 1 109839433 rs1278285 A G 2448.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.81;SB=-1.418e+03;SOR=1.039;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2477,178,0 1 109839896 rs7515901 C T 641.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.821;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.145;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.321;SB=-3.000e+02;SOR=0.495;VQSLOD=9.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,27:52:99:670,0,672 1 109839954 rs603624 G C 886.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.11;SB=-3.460e+02;SOR=1.445;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:69:915,69,0 1 109856842 . T TG 269.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.458;DP=51;ExcessHet=3.0103;FS=8.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.42;RPA=11,12;RU=G;ReadPosRankSum=0.844;SB=-6.829e-02;SOR=2.872;STR;VQSLOD=3.73;culprit=QD GT:AD:DP:GQ:PL 0/1:29,13:51:99:307,0,701 1 109856843 rs661278 G T 777.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.686;HaplotypeScore=18.2878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.25;ReadPosRankSum=-0.333;SB=-1.360e+02;SOR=0.214;VQSLOD=6.98;culprit=SOR GT:AD:DP:GQ:PL 0/1:22,29:51:99:806,0,615 1 109883576 rs66887225 C CAT 1443.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.772;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.70;MQ0=0;MQRankSum=1.447;POSITIVE_TRAIN_SITE;QD=31.39;ReadPosRankSum=0.620;SB=-3.080e+02;SOR=0.788;VQSLOD=2.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,28:46:99:1481,0,883 1 109884775 rs2228604 T G 523.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.137;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.817;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=0.017;SB=-6.400e+01;SOR=1.426;VQSLOD=7.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,17:35:99:552,0,509 1 109897100 rs72646560 T C 1435.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.931;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=2.338;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-1.420;SB=-7.790e+02;SOR=0.970;VQSLOD=7.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,57:121:99:1464,0,1761 1 109897103 rs11142 A G 1797.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.317;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=2.311;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=1.709;SB=-1.093e+03;SOR=0.484;VQSLOD=9.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,64:123:99:1826,0,1455 1 109898267 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T 2841.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.24;SB=-5.590e+02;SOR=3.126;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2870,214,0 1 110019439 rs62623713 A G 969.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=8.464;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=1.095;SB=-2.040e+02;SOR=1.688;VQSLOD=5.37;culprit=FS GT:AD:DP:GQ:PL 0/1:46,34:80:99:998,0,1107 1 110020341 rs57128261 C T 1543.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.335;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=8.088;HaplotypeScore=6.3227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=0.875;SB=-6.350e+02;SOR=0.211;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 0/1:39,55:94:99:1572,0,1063 1 110020621 rs62641754 A G 1924.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.962;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.689;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=1.080;SB=-6.670e+02;SOR=0.617;VQSLOD=8.08;culprit=DP GT:AD:DP:GQ:PL 0/1:77,69:146:99:1953,0,2080 1 110021837 rs9661614 T C 292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.558;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=-0.781;SB=-2.901e+01;SOR=1.112;VQSLOD=10.39;culprit=FS GT:AD:DP:GQ:PL 0/1:7,10:17:99:321,0,182 1 110030945 rs1144593 A G 1026.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.141;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=-0.343;SB=-4.560e+02;SOR=0.823;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:35,38:73:99:1055,0,933 1 110031648 rs377046901 A G 1786.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.963;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.49;ReadPosRankSum=-0.618;SB=-9.980e+02;SOR=0.702;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 0/1:78,65:143:99:1815,0,2101 1 110035318 rs34382032 AT A 107.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.18;RPA=9,8;RU=T;ReadPosRankSum=0.224;SB=-1.905e+01;SOR=1.179;STR;VQSLOD=8.86;culprit=QD GT:AD:DP:GQ:PL 0/1:8,7:17:99:145,0,193 1 110037838 rs749056 T G 994.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.357;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.281;SB=-7.020e+02;SOR=0.765;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:36,44:80:99:1023,0,965 1 110148974 rs1799875 C T 710.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.826;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=3.348;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=-0.657;SB=-2.720e+02;SOR=1.158;VQSLOD=7.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,27:73:99:739,0,1135 1 110163076 rs6669802 A G 384.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.851;HaplotypeScore=3.5030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=1.758;SB=-1.640e+02;SOR=0.269;VQSLOD=9.15;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,14:24:99:413,0,318 1 110164880 rs376384418 C G 1268.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.812;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=6.774;HaplotypeScore=1.8675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.64;ReadPosRankSum=-1.496;SB=-6.770e+02;SOR=0.898;VQSLOD=3.82;culprit=FS GT:AD:DP:GQ:PL 0/1:45,48:93:99:1297,0,1168 1 110168888 rs493972 C G 2052.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.11;SB=-1.116e+03;SOR=0.899;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2081,150,0 1 110169190 rs865774 C T 562.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.401;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.55;ReadPosRankSum=-0.224;SB=-1.240e+02;SOR=1.536;VQSLOD=6.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,18:34:99:591,0,478 1 110169957 rs524998 A G 3198.81 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=-1.038e+03;SOR=2.093;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:3227,256,0 1 110170896 rs863978 T C 3076.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.19;SB=-1.605e+03;SOR=0.738;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:3105,238,0 1 110171705 rs523786 A C 4651.77 PASS AC=2;AF=1.00;AN=2;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=-2.140e+03;SOR=1.504;VQSLOD=5.94;culprit=DP GT:AD:DP:GQ:PL 1/1:0,153:153:99:4680,340,0 1 110172346 . T TG 706.73 PASS AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;RPA=5,6;RU=G;SB=-2.620e+02;SOR=1.402;STR;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:21:60:744,60,0 1 110172362 rs2269341 C T 231.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.532;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=4.533;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=0.399;SB=-1.905e+01;SOR=2.012;VQSLOD=5.58;culprit=FS GT:AD:DP:GQ:PL 0/1:16,8:24:99:260,0,457 1 110173775 rs568686 G T 1564.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.849;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.749;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=0.423;SB=-5.420e+02;SOR=0.873;VQSLOD=8.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,63:122:99:1593,0,1637 1 110200152 rs113936771 A G 1375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.973;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=4.768;HaplotypeScore=4.4948;MLEAC=1;MLEAF=0.500;MQ=59.79;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.20;ReadPosRankSum=0.140;SB=-3.660e+02;SOR=1.375;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 0/1:37,43:81:99:1404,0,1145 1 110201580 rs650985 C T 5613.77 PASS AC=2;AF=1.00;AN=2;DB;DP=193;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.09;SB=-2.747e+03;SOR=1.333;VQSLOD=4.72;culprit=DP GT:AD:DP:GQ:PL 1/1:0,193:193:99:5642,409,0 1 110201699 rs506008 T C 2106.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.92;SB=-6.890e+02;SOR=1.863;VQSLOD=5.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:2135,163,0 1 110201809 rs562996 G T 1906.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-7.670e+02;SOR=1.647;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1935,144,0 1 110201812 rs563003 A G 2009.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=-8.340e+02;SOR=1.646;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2038,147,0 1 110210780 rs530021 C G 246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.3360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-0.532;SB=-1.240e+02;SOR=1.022;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:9,11:20:99:275,0,233 1 110210818 rs2073483 C T 73.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.71;ReadPosRankSum=-2.042;SB=-5.500e+01;SOR=0.446;VQSLOD=8.71;culprit=QD GT:AD:DP:GQ:PL 0/1:5,6:12:99:102,0,103 1 110212293 rs3819350 C A 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-0.705;SB=0.00;SOR=0.551;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:163,0,212 1 110252010 rs1292098 T C 417.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.204;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.418;HaplotypeScore=1.9923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.60;ReadPosRankSum=-0.930;SB=-2.100e+02;SOR=0.951;VQSLOD=5.96;culprit=QD GT:AD:DP:GQ:PL 0/1:36,19:55:99:446,0,883 1 110279821 rs1537234 C A 976.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.154;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=9.119;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.663;SB=-4.340e+02;SOR=1.079;VQSLOD=5.59;culprit=FS GT:AD:DP:GQ:PL 0/1:44,36:80:99:1005,0,1156 1 110281941 rs10735234 G A 781.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.019;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.155;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=0.378;SB=-4.490e+02;SOR=0.437;VQSLOD=10.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,31:63:99:810,0,808 1 110282972 rs1332018 G T 1903.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.570;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=0.642;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=0.217;SB=-7.850e+02;SOR=0.813;VQSLOD=8.45;culprit=DP GT:AD:DP:GQ:PL 0/1:75,72:147:99:1932,0,2041 1 110293792 rs7512903 G A 772.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.534;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-1.275;SB=-3.550e+02;SOR=0.586;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 0/1:41,30:71:99:801,0,1146 1 110294077 rs10706652 CT C 934.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;DB;DP=46;ExcessHet=3.0103;FS=6.662;MLEAC=1;MLEAF=0.500;MQ=60.24;MQ0=0;MQRankSum=0.939;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.77;RPA=2,1;RU=T;ReadPosRankSum=0.091;SB=-2.590e+02;SOR=1.893;STR;VQSLOD=0.111;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,25:46:99:972,0,762 1 110294577 rs2274536 A G 424.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-0.274;SB=-1.710e+02;SOR=0.536;VQSLOD=10.08;culprit=FS GT:AD:DP:GQ:PL 0/1:23,17:40:99:453,0,593 1 110295643 rs1887546 G T 988.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.406;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=-0.803;SB=-3.090e+02;SOR=0.725;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:30,38:68:99:1017,0,842 1 110295772 rs1887547 T C 1860.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.855;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=0.565;HaplotypeScore=3.6908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=0.921;SB=-1.204e+03;SOR=0.610;VQSLOD=7.50;culprit=DP GT:AD:DP:GQ:PL 0/1:90,80:170:99:1889,0,2226 1 110295890 rs1887548 C G 1190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.554;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=4.921;HaplotypeScore=2.8232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=1.514;SB=-4.340e+02;SOR=0.313;VQSLOD=8.95;culprit=FS GT:AD:DP:GQ:PL 0/1:47,46:93:99:1219,0,1388 1 110300441 rs3818562 G A 706.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.069;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=1.849;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.73;ReadPosRankSum=-1.027;SB=-4.960e+02;SOR=0.450;VQSLOD=9.47;culprit=QD GT:AD:DP:GQ:PL 0/1:45,36:81:99:735,0,1162 1 110300504 rs10776700 A G 2470.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-1.219e+03;SOR=1.292;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2499,181,0 1 110301766 rs373516452 AGTGT A 778.94 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=1.901;QD=27.82;RPA=19,17;RU=GT;ReadPosRankSum=0.786;SB=0.00;SOR=2.200;STR;VQSLOD=1.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,16:21:13:816,0,13 1 110302505 rs77854863 G A 1405.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.040;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=2.445;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=0.667;SB=-6.700e+02;SOR=0.944;VQSLOD=7.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:57,55:112:99:1434,0,1460 1 110304537 rs6676659 G A 531.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.852;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=1.704;SB=-1.320e+02;SOR=0.693;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:10,18:28:99:560,0,266 1 110459773 rs333967 C T 677.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SB=0.00;SOR=5.994;VQSLOD=8.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:706,57,0 1 110464698 . G A 159.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.184;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.88;ReadPosRankSum=0.890;SB=-1.766e+00;SOR=0.859;VQSLOD=7.89;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:188,0,348 1 110466338 rs333970 C A 8178.77 PASS AC=2;AF=1.00;AN=2;DB;DP=248;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=-4.442e+03;SOR=0.904;VQSLOD=4.89;culprit=DP GT:AD:DP:GQ:PL 1/1:0,248:248:99:8207,602,0 1 110466709 rs333971 T C 4722.77 PASS AC=2;AF=1.00;AN=2;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-2.257e+03;SOR=1.417;VQSLOD=6.96;culprit=DP GT:AD:DP:GQ:PL 1/1:0,153:153:99:4751,346,0 1 110467745 rs333972 A G 1734.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.40;SB=-9.010e+02;SOR=1.316;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1763,126,0 1 110558276 rs67481951 A AC 3025.73 PASS AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.64;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.36;SB=-9.330e+02;SOR=1.758;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:67:99:3063,196,0 1 110563153 rs145143338 GC G 384.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.897;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;MQ0=0;MQRankSum=1.086;POSITIVE_TRAIN_SITE;QD=24.05;ReadPosRankSum=-1.985;SB=0.00;SOR=1.609;VQSLOD=3.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,11:16:99:422,0,201 1 110581780 rs1834 T G 3303.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=11.615;DB;DP=246;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=0.053;SB=-1.948e+03;SOR=0.713;VQSLOD=6.74;culprit=DP GT:AD:DP:GQ:PL 0/1:124,122:246:99:3332,0,3276 1 110587924 rs7545124 G A 447.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.44;SB=0.00;SOR=3.767;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:476,36,0 1 110603286 rs139173949 A AGGTGCTTCCTCCGTGGTGTCCAGGCAGG 5390.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.508;DB;DP=61;ExcessHet=3.0103;FS=15.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.47;ReadPosRankSum=3.022;SB=-4.341e-03;SOR=3.658;VQSLOD=1.39;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:43,18:61:99:5428,0,8742 1 110709719 rs7527375 T C 3077.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.97;SB=-1.741e+03;SOR=0.739;VQSLOD=5.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:3106,226,0 1 110709720 rs12737742 G A 2836.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SB=-1.522e+03;SOR=0.715;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2865,223,0 1 110716511 rs12747833 C T 646.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.83;SB=-8.097e+01;SOR=3.500;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:675,51,0 1 110735037 rs2603583 T G 488.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.678;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.25;ReadPosRankSum=0.937;SB=-3.200e+01;SOR=1.508;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 0/1:8,15:23:99:517,0,233 1 110738296 rs2784140 G A 1705.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.090;DB;DP=161;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.349;SB=-1.098e+03;SOR=0.651;VQSLOD=7.74;culprit=DP GT:AD:DP:GQ:PL 0/1:92,68:160:99:1734,0,2296 1 110740273 rs2603581 G T 471.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.453;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.234;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=-0.893;SB=-1.540e+02;SOR=1.179;VQSLOD=6.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,19:49:99:500,0,880 1 110740406 rs2761443 C T 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=0.638;SB=-1.765e+00;SOR=1.179;VQSLOD=8.70;culprit=FS GT:AD:DP:GQ:PL 0/1:8,5:13:99:163,0,215 1 110740688 rs2761445 C T 971.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=1.027;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-1.292;SB=-4.090e+02;SOR=0.512;VQSLOD=9.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,37:66:99:1000,0,850 1 110765535 rs611587 C G 727.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.954;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.54;ReadPosRankSum=-0.072;SB=-3.876e+01;SOR=0.384;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:18,26:44:99:756,0,566 1 110768590 rs78186862 C T 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.69;ReadPosRankSum=-0.431;SB=-9.400e+01;SOR=0.576;VQSLOD=9.47;culprit=QD GT:AD:DP:GQ:PL 0/1:21,12:33:99:315,0,596 1 110882103 rs148173521 A G 1446.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.821;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=4.850;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=-1.653;SB=-8.630e+02;SOR=0.352;VQSLOD=8.69;culprit=FS GT:AD:DP:GQ:PL 0/1:53,56:109:99:1475,0,1422 1 110882444 rs814771 A G 613.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.205;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.172;HaplotypeScore=1.8660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=0.433;SB=-1.820e+02;SOR=1.074;VQSLOD=7.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,22:54:99:642,0,908 1 110919903 rs2279722 T C 553.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.61;SB=0.00;SOR=5.670;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:582,48,0 1 110921715 rs2271885 T G 855.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.505;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.78;ReadPosRankSum=-0.265;SB=-4.090e+02;SOR=0.720;VQSLOD=8.39;culprit=QD GT:AD:DP:GQ:PL 0/1:76,34:110:99:884,0,2169 1 110949720 rs6671673 C T 1042.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.97;SB=-5.110e+02;SOR=1.371;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:81:1071,81,0 1 110949810 rs35836705 A C 112.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=0.175;SB=0.00;SOR=0.551;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:141,0,209 1 110950439 rs6674775 C T 7104.77 PASS AC=2;AF=1.00;AN=2;DB;DP=230;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3201;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-2.937e+03;SOR=1.302;VQSLOD=3.33;culprit=DP GT:AD:DP:GQ:PL 1/1:0,230:230:99:7133,536,0 1 110993739 rs3806451 C A 3409.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.23;SB=-2.740e+02;SOR=4.826;VQSLOD=4.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:96:99:3438,265,0 1 111060669 rs1281175 T C 2787.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=11.329;DB;DP=182;Dels=0.00;ExcessHet=3.0103;FS=7.733;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=-0.369;SB=-1.542e+03;SOR=0.340;VQSLOD=5.33;culprit=DP GT:AD:DP:GQ:PL 0/1:83,99:182:99:2816,0,2363 1 111061062 rs1281174 T C 1036.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.977;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.00;ReadPosRankSum=0.550;SB=-5.790e+02;SOR=0.840;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:25,36:61:99:1065,0,662 1 111144526 rs4839071 T G 749.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.96;SB=-8.197e+01;SOR=3.716;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:57:778,57,0 1 111434170 rs137933588 CTGGTG C 2651.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;DB;DP=83;ExcessHet=3.0103;FS=4.754;MLEAC=1;MLEAF=0.500;MQ=60.13;MQ0=0;MQRankSum=1.091;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=0.855;SB=-1.036e+03;SOR=0.307;VQSLOD=0.309;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,37:83:99:2689,0,3153 1 111436857 rs1578956 T G 4880.77 PASS AC=2;AF=1.00;AN=2;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.94;SB=-2.184e+03;SOR=1.609;VQSLOD=6.09;culprit=DP GT:AD:DP:GQ:PL 1/1:0,163:163:99:4909,373,0 1 111436858 rs1936943 C T 5017.77 PASS AC=2;AF=1.00;AN=2;DB;DP=166;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1284;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-2.207e+03;SOR=1.567;VQSLOD=5.32;culprit=DP GT:AD:DP:GQ:PL 1/1:0,166:166:99:5046,379,0 1 111437129 rs1343817 A C 405.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.559;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.854;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=-1.259;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.874;SB=-5.800e+01;SOR=1.609;VQSLOD=0.515;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,14:32:99:434,0,523 1 111437176 . G GA 631.73 PASS AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.02;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;RPA=4,5;RU=A;SB=-1.005e+02;SOR=3.056;STR;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:21:60:669,60,0 1 111437421 rs2070749 C A 1009.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.82;SB=-1.971e+02;SOR=2.910;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:78:1038,78,0 1 111439527 rs2070750 A G 408.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=0.00;SOR=4.977;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:437,33,0 1 111441829 rs1803259 C T 4835.77 PASS AC=2;AF=1.00;AN=2;DB;DP=161;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;SB=-2.507e+03;SOR=1.151;VQSLOD=5.92;culprit=DP GT:AD:DP:GQ:PL 1/1:0,161:161:99:4864,358,0 1 111492859 rs2232043 T C 169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.517;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=0.000;SB=0.00;SOR=0.293;VQSLOD=10.08;culprit=FS GT:AD:DP:GQ:PL 0/1:11,6:17:99:198,0,385 1 111494194 rs2232041 C T 1238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.229;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.38;ReadPosRankSum=1.274;SB=-5.950e+02;SOR=0.748;VQSLOD=8.42;culprit=FS GT:AD:DP:GQ:PL 0/1:82,50:132:99:1267,0,2158 1 111661413 rs325916 T C 448.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.236;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=0.044;SB=-2.470e+02;SOR=0.523;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:26,20:46:99:477,0,706 1 111661528 rs325917 T C 487.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.169;HaplotypeScore=2.7678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=0.392;SB=-3.100e+02;SOR=0.446;VQSLOD=9.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,23:48:99:516,0,651 1 111726026 rs2243393 G A 484.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.746;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=4.501;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=-0.475;SB=-1.420e+02;SOR=0.169;VQSLOD=10.37;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,18:32:99:513,0,452 1 111726213 rs694180 A G 1190.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.34;SB=-3.320e+02;SOR=2.554;VQSLOD=5.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:90:1219,90,0 1 111726869 rs3795823 G A 555.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=0.584;SB=-3.750e+02;SOR=0.693;VQSLOD=10.28;culprit=FS GT:AD:DP:GQ:PL 0/1:14,22:36:99:584,0,358 1 111730040 . A G 92.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.28;ReadPosRankSum=-0.930;SB=0.00;SOR=0.412;VQSLOD=7.98;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:121,0,170 1 111731158 rs2297703 A G 303.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.355;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=0.657;SB=-1.766e+00;SOR=1.751;VQSLOD=6.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,11:22:99:332,0,347 1 111732003 rs35906145 T A 292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.461;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.70;ReadPosRankSum=0.308;SB=-7.700e+01;SOR=1.061;VQSLOD=6.38;culprit=QD GT:AD:DP:GQ:PL 0/1:25,13:38:99:321,0,677 1 111737183 rs660173 C T 1339.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.91;SB=-7.010e+02;SOR=1.298;VQSLOD=4.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1368,99,0 1 111737398 rs9970286 G A 250.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.223;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.900;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.65;ReadPosRankSum=-0.270;SB=-9.000e+01;SOR=0.275;VQSLOD=9.76;culprit=QD GT:AD:DP:GQ:PL 0/1:18,11:29:99:279,0,545 1 111739771 rs63467362 G GCAGGACAAA 12164.73 PASS AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.91;SB=-5.804e+03;SOR=0.773;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:105:99:12202,307,0 1 111741469 rs3748713 G A 884.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.215;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.898;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=1.148;SB=-7.297e+01;SOR=0.202;VQSLOD=8.50;culprit=SOR GT:AD:DP:GQ:PL 0/1:18,28:46:99:913,0,570 1 111742714 rs638825 A C 329.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=-3.876e+01;SOR=3.258;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:358,27,0 1 111742761 rs639210 T C 648.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.40;SB=-6.697e+01;SOR=3.500;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:677,51,0 1 111742838 rs639306 G C 1862.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=-5.710e+02;SOR=2.262;VQSLOD=7.00;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,57:57:99:1891,138,0 1 111770544 rs3748717 G A 793.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.741;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=-1.047;SB=-2.870e+02;SOR=0.669;VQSLOD=8.40;culprit=FS GT:AD:DP:GQ:PL 0/1:45,31:76:99:822,0,1227 1 111772303 . CA C 62.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.72;MQ0=0;MQRankSum=0.654;QD=4.83;RPA=24,23;RU=A;ReadPosRankSum=-0.780;SB=0.00;SOR=1.179;STR;VQSLOD=1.64;culprit=QD GT:AD:DP:GQ:PL 0/1:5,8:13:70:100,0,70 1 111778241 rs2764544 C T 2998.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-1.749e+03;SOR=0.780;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:3027,226,0 1 111778468 rs961364 G A 1540.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;SB=-6.940e+02;SOR=1.251;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:48:99:1569,117,0 1 111783996 rs2494007 A G 3752.77 PASS AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-1.926e+03;SOR=1.217;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,120:120:99:3781,268,0 1 111784148 rs2764551 T G 3671.77 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.21;SB=-1.701e+03;SOR=1.356;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,114:114:99:3700,265,0 1 111785550 rs3135451 C T 374.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.07;SB=0.00;SOR=4.977;VQSLOD=7.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:403,33,0 1 111785929 rs8535 C A 2124.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-6.140e+02;SOR=2.235;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2153,163,0 1 111824255 rs6537691 C T 241.85 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.111;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.99;ReadPosRankSum=0.000;SB=-1.593e+02;SOR=0.399;VQSLOD=8.84;culprit=FS GT:AD:DP:GQ:PL 0/1:1,10:11:17:270,0,17 1 111825844 rs111498305 T C 571.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-1.692;SB=-2.530e+02;SOR=0.521;VQSLOD=8.27;culprit=FS GT:AD:DP:GQ:PL 0/1:23,23:46:99:600,0,678 1 111826023 rs6688201 C G 1729.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=2;POSITIVE_TRAIN_SITE;QD=25.82;SB=-9.030e+02;SOR=1.162;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 1/1:2,65:67:99:1758,126,0 1 111854096 rs4839121 A G 916.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.74;SB=-1.653e+02;SOR=3.258;VQSLOD=7.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:945,72,0 1 111857087 rs2786151 C T 1120.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.96;SB=-1.881e+02;SOR=3.193;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:87:1149,87,0 1 111857107 rs56003810 A G 1510.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=-2.880e+02;SOR=3.160;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1539,111,0 1 111857120 rs3818820 C A 1610.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.22;SB=-3.500e+02;SOR=2.925;VQSLOD=6.73;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,50:50:99:1639,123,0 1 111857154 rs2786152 T C 2251.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-9.850e+02;SOR=1.512;VQSLOD=7.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2280,163,0 1 111857208 rs3818822 G A 3070.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;SB=-1.631e+03;SOR=0.976;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:3099,229,0 1 111857276 rs41391244 T C 2868.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-1.649e+03;SOR=1.044;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:98:99:2897,220,0 1 111858291 rs2786155 T C 1199.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.08;SB=-2.710e+02;SOR=2.517;VQSLOD=5.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:93:1228,93,0 1 111858444 rs2786156 C T 3696.77 PASS AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.64;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.44;SB=-2.479e+03;SOR=0.756;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,130:130:99:3725,271,0 1 111858499 rs6661725 A G 3000.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.373;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=63.54;MQ0=0;MQRankSum=0.734;POSITIVE_TRAIN_SITE;QD=30.62;ReadPosRankSum=-0.619;SB=-1.147e+03;SOR=0.649;VQSLOD=2.70;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,97:98:99:3029,193,0 1 111858526 . A C 1230.77 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=70.00;MQ0=0;QD=28.45;SB=-3.300e+02;SOR=2.235;VQSLOD=5.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:90:1259,90,0 1 111858526 rs67959246 AAATATAAGAATAAGACACTATCCTTGGCTT A 10553.73 PASS AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=70.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-2.577e+03;SOR=2.235;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:99:10591,99,0 1 111858589 rs2786157 G T 1490.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=67.32;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.41;SB=-3.090e+02;SOR=2.985;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1519,117,0 1 111858603 rs2786158 G T 1381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=66.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=-2.211e+02;SOR=3.365;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1410,108,0 1 111861475 rs7526459 A G 1552.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.51;SB=-2.840e+02;SOR=3.209;VQSLOD=4.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1581,117,0 1 111861714 rs2786161 T A 1325.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-2.740e+02;SOR=3.003;VQSLOD=7.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1354,102,0 1 111861841 rs2275253 A G 3542.77 PASS AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-1.866e+03;SOR=1.140;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,116:116:99:3571,271,0 1 111862074 rs2820092 C T 1982.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;SB=-7.400e+02;SOR=1.793;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2011,147,0 1 111862952 rs2256721 T G 4425.77 PASS AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-1.876e+03;SOR=1.593;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,141:141:99:4454,325,0 1 111863306 rs2820093 C T 846.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7122;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-1.493e+02;SOR=3.098;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:27:66:875,66,0 1 111866640 rs6690266 C A 211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.511;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=9.558;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-0.036;SB=-1.352e-01;SOR=3.611;VQSLOD=4.84;culprit=FS GT:AD:DP:GQ:PL 0/1:13,8:21:99:240,0,350 1 111890243 rs377429219 TC T 1045.73 PASS AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=26.81;SB=-1.092e+02;SOR=3.556;VQSLOD=1.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1083,115,0 1 111892905 rs3820443 T C 146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.481;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=-0.465;SB=-3.101e+01;SOR=0.693;VQSLOD=10.06;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:175,0,188 1 111893708 rs10158004 G A 221.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=5.229;HaplotypeScore=3.2948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.18;ReadPosRankSum=0.105;SB=-1.765e+00;SOR=3.383;VQSLOD=5.40;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:59:250,0,59 1 111893958 rs1668 A G 856.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.347;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=0.660;SB=-4.110e+02;SOR=0.807;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:31,36:67:99:885,0,788 1 111957097 rs7825 C G 932.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.31;SB=-2.061e+02;SOR=2.833;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:69:961,69,0 1 111957245 rs9629 G A 3597.77 PASS AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-1.655e+03;SOR=1.371;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,112:112:99:3626,265,0 1 111957693 rs2485319 A G 5377.77 PASS AC=2;AF=1.00;AN=2;DB;DP=171;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=63.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.45;SB=-2.662e+03;SOR=1.026;VQSLOD=6.60;culprit=DP GT:AD:DP:GQ:PL 1/1:0,171:171:99:5406,403,0 1 111962455 rs1264881 C T 523.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.92;SB=-3.677e+01;SOR=4.047;VQSLOD=8.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:552,42,0 1 111966291 rs954739 C T 1931.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-8.120e+02;SOR=1.536;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:63:99:1960,147,0 1 111969294 rs1264892 A G 2078.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.03;SB=-1.354e+03;SOR=0.723;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2107,150,0 1 111969307 rs2275795 G C 1925.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.18;SB=-1.223e+03;SOR=0.886;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:1954,144,0 1 111969719 rs1264894 A G 3430.77 PASS AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.83;SB=-1.953e+03;SOR=0.984;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,115:115:99:3459,253,0 1 111970213 rs370992036 C T 317.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.716;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=13.856;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.24;ReadPosRankSum=-0.609;SB=-1.352e-01;SOR=4.174;VQSLOD=2.55;culprit=FS GT:AD:DP:GQ:PL 0/1:13,11:24:99:346,0,390 1 111983832 . CT C 311.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;DP=36;ExcessHet=3.0103;FS=1.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.66;RPA=5,4;RU=T;ReadPosRankSum=-0.081;SB=-4.400e+01;SOR=1.127;STR;VQSLOD=5.57;culprit=QD GT:AD:DP:GQ:PL 0/1:22,14:36:99:349,0,639 1 111985229 rs1264902 G T 2491.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.61;SB=-5.480e+02;SOR=2.802;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2520,187,0 1 111990265 rs2298185 T C 2027.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.68;SB=-5.380e+02;SOR=2.531;VQSLOD=7.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2056,147,0 1 111991845 rs1270853 C A 2519.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-1.159e+03;SOR=1.329;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2548,187,0 1 111992095 rs1264899 C T 5587.77 PASS AC=2;AF=1.00;AN=2;DB;DP=191;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=-3.264e+03;SOR=0.910;VQSLOD=5.34;culprit=DP GT:AD:DP:GQ:PL 1/1:0,191:191:99:5616,412,0 1 111997063 rs12039127 G T 1197.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.877;DB;DP=36;Dels=0.03;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=34.22;ReadPosRankSum=0.347;SB=-1.493e+02;SOR=3.656;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:1,34:35:93:1226,93,0 1 112018657 rs6703267 G A 2090.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-8.490e+02;SOR=1.751;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2119,157,0 1 112020238 rs2211494 A C 445.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4925;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.61;SB=-2.361e+02;SOR=0.693;VQSLOD=4.24;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,12:12:36:474,36,0 1 112026449 rs17027794 G A 1454.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.483;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=1.396;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=-1.517;SB=-8.090e+02;SOR=0.903;VQSLOD=7.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:73,60:133:99:1483,0,1954 1 112028577 rs2275796 A T 233.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.485;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=5.545;HaplotypeScore=3.4393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=-0.857;SB=-9.051e+01;SOR=0.086;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:15,11:26:99:262,0,486 1 112029193 rs2252739 A G 1368.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=57.5724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=0.097;SB=-7.340e+02;SOR=0.804;VQSLOD=7.88;culprit=FS GT:AD:DP:GQ:PL 0/1:56,60:118:99:1397,0,1401 1 112029325 rs2800906 A G 1526.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.455;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=0.653;SB=-8.120e+02;SOR=0.653;VQSLOD=8.67;culprit=FS GT:AD:DP:GQ:PL 0/1:68,59:127:99:1555,0,1611 1 112032347 rs2789539 G A 680.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.841;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.596;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=0.191;SB=-9.400e+01;SOR=1.179;VQSLOD=8.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,26:54:99:709,0,761 1 112033456 . G GA 477.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DP=43;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;RPA=3,4;RU=A;ReadPosRankSum=0.517;SB=-1.380e+02;SOR=1.085;STR;VQSLOD=7.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,18:43:99:515,0,646 1 112033515 rs2252198 T C 282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.320;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=0.041;SB=-1.765e+00;SOR=1.942;VQSLOD=8.24;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:20:99:311,0,286 1 112033519 rs2252197 A G 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.864;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=0.082;SB=0.00;SOR=1.609;VQSLOD=8.95;culprit=FS GT:AD:DP:GQ:PL 0/1:10,9:19:99:315,0,283 1 112042383 rs923 G A 239.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.139;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=0.869;SB=0.00;SOR=0.412;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:13,9:22:99:268,0,466 1 112042610 . C A 1613.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.173;DP=135;Dels=0.00;ExcessHet=3.0103;FS=3.121;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.95;ReadPosRankSum=0.529;SB=-8.930e+02;SOR=0.444;VQSLOD=7.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:72,63:135:99:1642,0,2061 1 112042632 rs2229155 A G 1623.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=4.340;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.251;SB=-1.046e+03;SOR=0.385;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 0/1:63,63:127:99:1652,0,1796 1 112045463 rs12127443 T A 191.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.357;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=-0.277;SB=0.00;SOR=0.836;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:220,0,188 1 112106342 rs1591711 C T 496.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.609;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.353;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=1.198;SB=-1.320e+02;SOR=1.398;VQSLOD=6.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,19:34:99:525,0,380 1 112106444 rs1591712 G A 797.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.265;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=5.774;HaplotypeScore=2.7868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=-0.143;SB=-5.120e+02;SOR=0.518;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 0/1:43,36:79:99:826,0,1150 1 112234084 rs10489469 G T 1067.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.051;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=4.806;HaplotypeScore=2.8868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=-0.062;SB=-5.700e+02;SOR=0.623;VQSLOD=5.07;culprit=FS GT:AD:DP:GQ:PL 0/1:63,45:108:99:1096,0,1689 1 112240038 . C CT 255.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;DP=66;ExcessHet=3.0103;FS=2.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.06;RPA=14,15;RU=T;ReadPosRankSum=-0.313;SB=-1.080e+02;SOR=0.826;STR;VQSLOD=4.36;culprit=QD GT:AD:DP:GQ:PL 0/1:45,18:66:99:293,0,754 1 112269872 rs197434 G A 2842.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-1.571e+03;SOR=0.959;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:2871,214,0 1 112298582 rs197392 A G 1041.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.495;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-1.311;SB=-6.520e+02;SOR=0.688;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:37,41:78:99:1070,0,980 1 112302219 rs538779 G A 1298.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=4.171;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-0.943;SB=-3.750e+02;SOR=1.183;VQSLOD=7.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,46:97:99:1327,0,1272 1 112308953 rs197412 T C 1468.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.727;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=2.333;HaplotypeScore=3.2762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-0.124;SB=-8.470e+02;SOR=0.559;VQSLOD=9.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:69,53:122:99:1497,0,1858 1 112308972 rs197413 G A 1308.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.422;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=1.437;HaplotypeScore=2.7059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=0.862;SB=-7.260e+02;SOR=0.699;VQSLOD=8.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:73,52:125:99:1337,0,1968 1 112321032 rs640029 T A 450.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=-0.413;SB=-2.580e+02;SOR=0.481;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:10,19:29:99:479,0,201 1 112991698 rs2256883 T C 836.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.549;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.926;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=-0.548;SB=-4.780e+02;SOR=0.495;VQSLOD=10.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,33:71:99:865,0,1061 1 112991862 rs3818729 G T 771.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.961;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=-0.919;SB=-3.000e+02;SOR=0.793;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:28,30:58:99:800,0,695 1 112999227 rs1175641 G A 2602.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SB=-1.559e+03;SOR=0.718;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2631,196,0 1 113059220 rs351372 T A 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=0.312;SB=-3.677e+01;SOR=0.293;VQSLOD=10.04;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:201,0,162 1 113063125 rs910697 A G 853.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.986;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=3.971;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-0.524;SB=-3.190e+02;SOR=0.302;VQSLOD=10.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,31:68:99:882,0,1012 1 113068577 rs35147679 C T 1388.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.878;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.760;HaplotypeScore=4.3192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-0.611;SB=-6.400e+02;SOR=0.602;VQSLOD=9.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,54:103:99:1417,0,1305 1 113083439 rs10745330 C T 449.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.773;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=10.193;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-1.268;SB=-5.100e+01;SOR=2.872;VQSLOD=5.62;culprit=FS GT:AD:DP:GQ:PL 0/1:13,15:28:99:478,0,351 1 113113194 rs60579835 C T 216.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-1.292;SB=-2.801e+01;SOR=1.022;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:10,8:18:99:245,0,285 1 113140583 rs12049572 T C 311.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.88;ReadPosRankSum=-1.212;SB=-6.900e+01;SOR=0.848;VQSLOD=8.37;culprit=QD GT:AD:DP:GQ:PL 0/1:37,16:53:99:340,0,966 1 113202417 rs2932536 G A 860.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.810;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-0.590;SB=-4.600e+02;SOR=0.871;VQSLOD=8.99;culprit=FS GT:AD:DP:GQ:PL 0/1:33,34:67:99:889,0,756 1 113202571 rs12120956 G A 186.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.453;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.12;ReadPosRankSum=-0.258;SB=-3.201e+01;SOR=0.250;VQSLOD=9.40;culprit=QD GT:AD:DP:GQ:PL 0/1:15,8:23:99:215,0,501 1 113231503 rs12129649 G T 122.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.777;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=-0.579;SB=-9.732e-01;SOR=1.802;VQSLOD=5.35;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:14:99:151,0,258 1 113232455 . C T 966.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.035;DP=93;Dels=0.00;ExcessHet=3.0103;FS=1.754;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.40;ReadPosRankSum=0.371;SB=-4.240e+02;SOR=0.992;VQSLOD=6.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,38:93:99:995,0,1500 1 113234456 rs2932532 G A 1550.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=5.667;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-0.104;SB=-7.570e+02;SOR=1.184;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 0/1:57,62:119:99:1579,0,1375 1 113236534 rs1110042 A T 354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.066;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=0.493;SB=0.00;SOR=0.859;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:11,13:24:99:383,0,359 1 113236681 rs3748656 C T 2547.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.251;DB;DP=198;Dels=0.00;ExcessHet=3.0103;FS=0.550;HaplotypeScore=3.4296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=-0.697;SB=-1.213e+03;SOR=0.613;VQSLOD=7.56;culprit=DP GT:AD:DP:GQ:PL 0/1:96,102:198:99:2576,0,2592 1 113237171 rs883593 A G 665.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.278;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=2.051;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=0.298;SB=-4.290e+02;SOR=0.423;VQSLOD=9.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,29:69:99:694,0,1142 1 113238665 . T TA 345.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;DP=40;ExcessHet=3.0103;FS=1.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.86;RPA=8,9;RU=A;ReadPosRankSum=0.368;SB=-4.600e+01;SOR=1.089;STR;VQSLOD=7.02;culprit=QD GT:AD:DP:GQ:PL 0/1:22,17:40:99:383,0,482 1 113239382 rs17030651 G A 445.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.564;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.82;ReadPosRankSum=0.515;SB=-2.130e+02;SOR=0.806;VQSLOD=5.43;culprit=QD GT:AD:DP:GQ:PL 0/1:39,18:57:99:474,0,1125 1 113239478 rs2999158 T C 1556.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.31;SB=-1.049e+03;SOR=0.877;VQSLOD=3.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1585,117,0 1 113240790 rs12133583 G T 333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.210;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.10;ReadPosRankSum=-0.442;SB=-1.390e+02;SOR=0.804;VQSLOD=8.53;culprit=QD GT:AD:DP:GQ:PL 0/1:33,14:47:99:362,0,1100 1 113241052 rs2306940 T C 1159.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.905;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.761;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=0.497;SB=-4.730e+02;SOR=0.591;VQSLOD=9.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:69,46:115:99:1188,0,1799 1 113242488 rs3013431 C T 966.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.755;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.214;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-0.625;SB=-5.760e+02;SOR=0.354;VQSLOD=9.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,36:72:99:995,0,952 1 113243048 rs6679 C T 1651.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.545;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=-1.358;SB=-7.470e+02;SOR=0.807;VQSLOD=8.35;culprit=FS GT:AD:DP:GQ:PL 0/1:58,62:120:99:1680,0,1729 1 113244433 rs2279500 T C 1475.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-4.860e+02;SOR=2.208;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1504,111,0 1 113246229 rs937053 T A 733.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.209;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=-2.152;SB=-3.976e+01;SOR=0.582;VQSLOD=9.07;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:27,24:51:99:762,0,828 1 113246506 rs2306937 C T 330.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.528;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=-1.859;SB=0.00;SOR=1.022;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:19:99:359,0,262 1 113248365 rs954679 A G 431.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.579;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.235;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=0.131;SB=-1.070e+02;SOR=0.195;VQSLOD=9.85;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,15:29:99:460,0,437 1 113252614 rs41310100 C A 792.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.351;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=7.329;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=0.069;SB=-5.300e+01;SOR=1.897;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 0/1:27,27:54:99:821,0,774 1 113254125 rs12040903 G A 1265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-0.280;SB=-5.590e+02;SOR=0.700;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:48,51:100:99:1294,0,1160 1 113254267 rs7522283 G C 116.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.170;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.49;ReadPosRankSum=0.272;SB=-2.701e+01;SOR=1.230;VQSLOD=8.99;culprit=QD GT:AD:DP:GQ:PL 0/1:11,7:18:99:145,0,290 1 113254484 rs4839258 A G 1132.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.32;SB=-2.311e+02;SOR=2.899;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:84:1161,84,0 1 113255212 rs12137976 G T 513.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.35;ReadPosRankSum=-1.231;SB=0.00;SOR=0.997;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:12,16:28:99:542,0,394 1 113256382 rs45492096 A C 485.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.575;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=4.058;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=-0.612;SB=-1.765e+00;SOR=2.461;VQSLOD=5.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,17:28:99:514,0,319 1 113456546 rs1049434 A T 1447.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.84;SB=-6.100e+02;SOR=1.480;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1476,111,0 1 113459676 rs71659381 G A 272.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.646;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=4.152;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.02;ReadPosRankSum=0.829;SB=-2.004e+01;SOR=1.718;VQSLOD=5.31;culprit=QD GT:AD:DP:GQ:PL 0/1:23,11:34:99:301,0,617 1 113460676 rs149491709 CAATA C 450.74 PASS AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.89;RPA=12,11;RU=AATA;SB=0.00;SOR=4.615;STR;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,9:21:27:488,27,0 1 113460683 rs1344429 T G 198.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-3.938;SB=-7.897e+01;SOR=0.069;VQSLOD=7.06;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,9:18:99:227,0,202 1 113460687 rs201021807 T G 188.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.48;ReadPosRankSum=3.091;SB=-1.766e+00;SOR=2.833;VQSLOD=3.36;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,9:14:99:217,0,108 1 113471629 . CT C 117.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;DP=50;ExcessHet=3.0103;FS=3.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.40;RPA=14,13;RU=T;ReadPosRankSum=-0.837;SB=-6.500e+01;SOR=0.256;STR;VQSLOD=7.58;culprit=QD GT:AD:DP:GQ:PL 0/1:37,12:50:99:155,0,874 1 113636924 rs1216802 T C 778.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.77;SB=0.00;SOR=6.184;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:807,63,0 1 113641103 rs1216809 G C 375.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.36;SB=0.00;SOR=4.804;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:404,30,0 1 113657092 rs1216793 A C 4326.77 PASS AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=-1.919e+03;SOR=1.478;VQSLOD=5.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,140:140:99:4355,328,0 1 113658887 rs1216791 G A 3521.77 PASS AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-1.643e+03;SOR=1.295;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,111:111:99:3550,262,0 1 113659065 rs10541977 ACT A 5622.73 PASS AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.57;RPA=2,1;RU=CT;SB=-2.466e+03;SOR=1.008;STR;VQSLOD=5.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,107:117:99:5660,322,0 1 113662249 rs12568813 G C 827.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.49;SB=-4.276e+01;SOR=4.977;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:69:856,69,0 1 114092306 rs10858004 A G 747.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.929;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=-1.531;SB=-1.690e+02;SOR=0.859;VQSLOD=9.91;culprit=FS GT:AD:DP:GQ:PL 0/1:25,24:49:99:776,0,686 1 114191994 rs1743594 G A 3154.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.173;DB;DP=237;Dels=0.00;ExcessHet=3.0103;FS=0.495;HaplotypeScore=6.2094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=1.253;SB=-1.532e+03;SOR=0.632;VQSLOD=6.61;culprit=DP GT:AD:DP:GQ:PL 0/1:114,123:237:99:3183,0,2999 1 114224782 . A AT 123.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.330;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQ0=0;MQRankSum=1.041;POSITIVE_TRAIN_SITE;QD=4.95;RPA=16,17;RU=T;ReadPosRankSum=2.475;SB=-5.300e+01;SOR=0.495;STR;VQSLOD=2.04;culprit=QD GT:AD:DP:GQ:PL 0/1:12,13:27:99:161,0,205 1 114234690 rs12138638 C T 291.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.687;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.854;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.16;ReadPosRankSum=-0.488;SB=-1.765e+00;SOR=2.387;VQSLOD=5.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,10:17:99:320,0,197 1 114240319 rs5777167 T TA 1385.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;DB;DP=107;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.500;MQ=60.10;MQ0=0;MQRankSum=1.340;POSITIVE_TRAIN_SITE;QD=12.95;RPA=1,2;RU=A;ReadPosRankSum=-0.078;SB=-6.550e+02;SOR=0.787;STR;VQSLOD=0.115;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:68,39:107:99:1423,0,2425 1 114242122 rs3752954 T C 226.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.826;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=-1.145;SB=-6.600e+01;SOR=0.458;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:255,0,192 1 114249382 rs6698586 C T 436.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.376;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.715;HaplotypeScore=7.5103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=1.297;SB=-1.480e+02;SOR=1.251;VQSLOD=7.07;culprit=QD GT:AD:DP:GQ:PL 0/1:29,19:48:99:465,0,746 1 114256139 rs3789597 C T 128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=0.000;SB=0.00;SOR=0.693;VQSLOD=10.34;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:157,0,149 1 114267347 rs1230640 C T 467.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.283;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-0.984;SB=-2.940e+02;SOR=0.454;VQSLOD=9.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,21:38:99:496,0,446 1 114280717 rs2273758 A C 405.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-0.226;SB=-1.060e+02;SOR=0.460;VQSLOD=10.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,15:34:99:434,0,555 1 114309172 rs1935836 C T 466.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.422;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.34;ReadPosRankSum=1.266;SB=0.00;SOR=2.093;VQSLOD=7.97;culprit=FS GT:AD:DP:GQ:PL 0/1:5,15:20:99:495,0,145 1 114339956 rs67958557 C CTAAA 626.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQ0=0;MQRankSum=1.132;POSITIVE_TRAIN_SITE;QD=20.44;ReadPosRankSum=-1.262;SB=-6.300e+01;SOR=0.610;VQSLOD=3.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,11:23:99:664,0,780 1 114377093 rs1599971 A G 452.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.30;ReadPosRankSum=-0.427;SB=-1.550e+02;SOR=1.179;VQSLOD=6.43;culprit=QD GT:AD:DP:GQ:PL 0/1:40,22:62:99:481,0,1117 1 114377148 rs1970559 T C 215.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.949;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.688;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.44;ReadPosRankSum=-0.180;SB=-9.732e-01;SOR=1.702;VQSLOD=5.70;culprit=QD GT:AD:DP:GQ:PL 0/1:18,11:29:99:244,0,600 1 114377568 rs2476601 A G 3322.77 PASS AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7475;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.89;SB=-2.068e+03;SOR=0.899;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,115:115:99:3351,247,0 1 114396955 rs2476602 G A 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.576;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=0.628;SB=-2.801e+01;SOR=1.022;VQSLOD=10.31;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:247,0,153 1 114400590 rs55730164 C T 802.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.871;HaplotypeScore=3.5766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=-0.740;SB=-4.760e+02;SOR=1.051;VQSLOD=7.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,38:78:99:831,0,1003 1 114401231 rs1217418 A G 432.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.664;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=0.599;SB=-2.170e+02;SOR=0.734;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:18,22:43:99:461,0,489 1 114401904 rs1217419 T G 633.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.383;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.38;ReadPosRankSum=-0.500;SB=-7.997e+01;SOR=1.101;VQSLOD=9.21;culprit=FS GT:AD:DP:GQ:PL 0/1:8,18:26:99:662,0,156 1 114423653 rs1217382 C T 501.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.959;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=-1.725;SB=-2.100e+02;SOR=0.693;VQSLOD=10.06;culprit=FS GT:AD:DP:GQ:PL 0/1:13,22:35:99:530,0,270 1 114424601 rs1217381 C T 2020.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-9.540e+02;SOR=1.197;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:2049,154,0 1 114429340 rs1746860 T C 523.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.218;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=-0.940;SB=-2.220e+02;SOR=0.823;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:34,22:56:99:552,0,965 1 114429461 rs2358994 G A 298.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=0.352;SB=-4.176e+01;SOR=0.481;VQSLOD=10.10;culprit=FS GT:AD:DP:GQ:PL 0/1:6,11:17:99:327,0,160 1 114438951 rs1217401 A G 769.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=3.468;HaplotypeScore=1.8308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-0.269;SB=-4.100e+02;SOR=1.181;VQSLOD=7.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,31:64:99:798,0,877 1 114441525 . T TA 74.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.23;RPA=14,15;RU=A;ReadPosRankSum=1.254;SB=0.00;SOR=0.693;STR;VQSLOD=7.47;culprit=QD GT:AD:DP:GQ:PL 0/1:6,6:15:99:112,0,99 1 114443035 rs3789613 C G 533.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=6.855;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-0.307;SB=-1.790e+02;SOR=0.118;VQSLOD=8.84;culprit=FS GT:AD:DP:GQ:PL 0/1:16,21:37:99:562,0,525 1 114444444 rs34751342 T G 928.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.235;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=0.230;SB=-5.830e+02;SOR=0.619;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:53,36:89:99:957,0,1471 1 114447034 rs6661817 G C 1155.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.610;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=3.612;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=-0.468;SB=-6.100e+01;SOR=1.565;VQSLOD=5.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,36:76:99:1184,0,1239 1 114448389 rs11552449 C T 632.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.234;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.168;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=-1.526;SB=-1.980e+02;SOR=0.919;VQSLOD=7.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,26:55:99:661,0,835 1 114449662 rs3761936 T C 816.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.944;HaplotypeScore=3.5306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=0.290;SB=-3.140e+02;SOR=0.852;VQSLOD=7.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,30:67:99:845,0,929 1 114472218 rs1217441 A G 71.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.52;ReadPosRankSum=0.269;SB=-3.400e+01;SOR=0.283;VQSLOD=9.32;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:99:100,0,206 1 114508685 rs72691850 A G 709.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.136;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=3.779;HaplotypeScore=1.8924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=0.550;SB=-3.400e+02;SOR=0.291;VQSLOD=9.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,28:69:99:738,0,1128 1 114512939 rs3811018 A T 787.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.113;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.710;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.808;SB=-1.270e+02;SOR=1.292;VQSLOD=7.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,30:61:99:816,0,795 1 114515717 rs2358996 G A 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.298;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.85;ReadPosRankSum=0.454;SB=-1.450e+02;SOR=1.042;VQSLOD=6.53;culprit=QD GT:AD:DP:GQ:PL 0/1:27,14:41:99:309,0,676 1 114641685 rs2774285 A G 2257.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-9.810e+02;SOR=1.547;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2286,163,0 1 114940632 rs5777192 CA C 98.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;DB;DP=25;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.29;RPA=12,11;RU=A;ReadPosRankSum=-1.294;SB=-1.133e+01;SOR=1.329;STR;VQSLOD=4.79;culprit=QD GT:AD:DP:GQ:PL 0/1:15,8:25:99:136,0,306 1 114947935 rs1230795 G A 373.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=0.00;SOR=4.977;VQSLOD=8.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:402,33,0 1 114948281 rs6537825 A G 5697.77 PASS AC=2;AF=1.00;AN=2;DB;DP=184;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-3.671e+03;SOR=0.760;VQSLOD=6.18;culprit=DP GT:AD:DP:GQ:PL 1/1:0,184:184:99:5726,409,0 1 114951220 rs6672519 C T 385.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.981;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.64;ReadPosRankSum=-0.069;SB=-9.600e+01;SOR=0.743;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:24,16:40:99:414,0,697 1 114951390 rs71662879 T A 819.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=3.413;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=0.424;SB=-4.880e+02;SOR=0.349;VQSLOD=9.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,31:66:99:848,0,941 1 114963973 rs34764124 TA T 113.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.11;RPA=12,11;RU=A;ReadPosRankSum=-0.256;SB=0.00;SOR=0.693;STR;VQSLOD=9.55;culprit=QD GT:AD:DP:GQ:PL 0/1:8,8:16:99:151,0,173 1 114973429 rs12083584 T C 733.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.014;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.975;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=0.077;SB=-4.810e+02;SOR=0.478;VQSLOD=10.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,31:62:99:762,0,716 1 115006230 rs34437690 TA T 290.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;RPA=15,14;RU=A;ReadPosRankSum=-0.353;SB=-7.651e+01;SOR=0.330;STR;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:5,17:28:73:328,0,73 1 115080875 rs2014836 A G 313.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.895;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=-0.079;SB=-1.690e+02;SOR=0.892;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:7,13:20:99:342,0,162 1 115144304 rs12730318 C T 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.780;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=0.422;SB=-1.765e+00;SOR=2.030;VQSLOD=7.73;culprit=FS GT:AD:DP:GQ:PL 0/1:8,5:15:99:163,0,225 1 115144703 rs28398 A G 2016.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5009;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.01;SB=-1.046e+03;SOR=0.933;VQSLOD=6.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:64:99:2045,147,0 1 115161140 rs12145066 C T 81.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.201;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.45;ReadPosRankSum=0.798;SB=-4.076e+01;SOR=0.050;VQSLOD=8.81;culprit=QD GT:AD:DP:GQ:PL 0/1:10,5:15:99:110,0,359 1 115165472 rs222502 T A 1369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.98;SB=0.00;SOR=7.328;VQSLOD=4.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1398,114,0 1 115166350 rs148413143 ATTGT A 1148.73 PASS AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;RPA=2,1;RU=TTGT;SB=-6.676e+01;SOR=4.615;STR;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:33:60:1186,60,0 1 115168097 rs12136548 T C 1224.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.284;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=2.519;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=-1.312;SB=-7.960e+02;SOR=0.799;VQSLOD=7.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,50:102:99:1253,0,1370 1 115168600 rs7541738 A T 926.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.712;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.582;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=0.306;SB=-3.520e+02;SOR=0.344;VQSLOD=9.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,36:63:99:955,0,722 1 115222434 rs761755 G A 446.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SB=-3.377e+01;SOR=3.767;VQSLOD=8.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:475,36,0 1 115238016 rs68036474 CA C 657.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;DB;DP=50;ExcessHet=3.0103;FS=1.526;MLEAC=1;MLEAF=0.500;MQ=60.43;MQ0=0;MQRankSum=0.697;POSITIVE_TRAIN_SITE;QD=14.30;RPA=15,14;RU=A;ReadPosRankSum=-0.261;SB=-2.331e+02;SOR=0.491;STR;VQSLOD=0.342;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,38:50:85:695,0,85 1 115256669 rs969273 G A 295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.926;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-0.529;SB=-3.976e+01;SOR=0.264;VQSLOD=10.09;culprit=FS GT:AD:DP:GQ:PL 0/1:9,11:20:99:324,0,309 1 115276978 rs57342611 GA G 202.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;DB;DP=35;ExcessHet=3.0103;FS=4.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.96;RPA=11,10;RU=A;ReadPosRankSum=0.532;SB=-8.900e+01;SOR=0.163;STR;VQSLOD=7.42;culprit=QD GT:AD:DP:GQ:PL 0/1:21,13:35:99:240,0,461 1 115284056 rs7537232 G T 1051.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.958;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.720;SB=-5.230e+02;SOR=0.569;VQSLOD=10.03;culprit=FS GT:AD:DP:GQ:PL 0/1:28,42:70:99:1080,0,645 1 115398044 rs60659641 GC G 793.73 PASS AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.51;RPA=7,6;RU=C;SB=-2.231e+02;SOR=2.030;STR;VQSLOD=7.00;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,23:23:69:831,69,0 1 115399779 rs370696536 G A 61.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.308;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=16.7378;MLEAC=1;MLEAF=0.500;MQ=58.75;MQ0=0;MQRankSum=0.000;QD=2.57;ReadPosRankSum=0.524;SB=-9.732e-01;SOR=2.670;VQSLOD=3.24;culprit=QD GT:AD:DP:GQ:PL 0/1:21,3:27:90:90,0,235 1 115399940 rs360614 T G 562.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.885;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=-0.160;SB=-4.070e+02;SOR=0.634;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:31,26:57:99:591,0,878 1 115401136 rs360615 G A 958.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.43;SB=-1.205e+02;SOR=3.690;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:75:987,75,0 1 115420905 rs360636 T C 164.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.470;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-0.169;SB=-3.200e+01;SOR=1.179;VQSLOD=10.01;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:193,0,213 1 115430422 rs12135485 G A 170.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.076;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-1.596;SB=-2.203e+01;SOR=1.445;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:199,0,142 1 115524216 rs12026343 C T 231.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.977;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-0.668;SB=0.00;SOR=0.512;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:10,8:18:99:260,0,267 1 115576023 rs10776792 A G 4565.77 PASS AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.64;SB=-2.195e+03;SOR=1.398;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,149:149:99:4594,328,0 1 115576482 rs28566771 C G 256.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.12;ReadPosRankSum=0.921;SB=0.00;SOR=1.112;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:285,0,194 1 115576654 rs201857310 A G 1777.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.389;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=6.358;HaplotypeScore=1.7870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.61;ReadPosRankSum=-1.256;SB=-7.450e+02;SOR=1.211;VQSLOD=4.32;culprit=FS GT:AD:DP:GQ:PL 0/1:76,65:141:99:1806,0,2013 1 115601615 rs7523818 A G 1628.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-3.820e+02;SOR=2.494;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1657,120,0 1 115615358 rs753189 T C 525.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.989;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.47;ReadPosRankSum=1.062;SB=0.00;SOR=1.101;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:11,16:27:99:554,0,352 1 115631924 rs4240540 C T 1005.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.44;SB=-3.600e+02;SOR=1.839;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:75:1034,75,0 1 116206423 rs4839469 G A 1982.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.602;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-0.101;SB=-1.004e+03;SOR=0.692;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 0/1:71,76:147:99:2011,0,1837 1 116224925 rs10923176 G A 163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.477;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=-0.302;SB=-1.765e+00;SOR=0.963;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:11,6:17:99:192,0,293 1 116224940 rs10754330 C A 177.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.543;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=-0.169;SB=-1.765e+00;SOR=1.022;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:12,7:19:99:206,0,359 1 116225180 rs10923177 A C 331.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.808;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=-0.136;SB=-3.500e+01;SOR=1.244;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:360,0,221 1 116226459 rs12144356 C T 191.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=-1.872;SB=0.00;SOR=0.836;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:220,0,201 1 116226749 rs373143530 T TTTTA 777.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQ0=0;MQRankSum=0.971;POSITIVE_TRAIN_SITE;QD=20.11;RPA=7,8;RU=TTTA;ReadPosRankSum=0.242;SB=-1.100e+02;SOR=0.465;STR;VQSLOD=3.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,16:50:99:815,0,627 1 116243877 rs7413162 G A 327.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.772;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.21;ReadPosRankSum=1.270;SB=-2.501e+01;SOR=2.147;VQSLOD=6.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,11:18:99:356,0,181 1 116245809 rs6667224 C T 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.443;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=0.235;SB=0.00;SOR=0.593;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:246,0,314 1 116247790 rs3811003 G A 1122.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.190;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=12.789;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=-0.465;SB=-1.550e+02;SOR=2.252;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 0/1:34,39:73:99:1151,0,893 1 116260532 rs2997741 A T 1200.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.925;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=-0.386;SB=-5.130e+02;SOR=0.670;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:26,47:73:99:1229,0,694 1 116260544 rs3811001 C T 1082.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.687;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.278;SB=-3.940e+02;SOR=0.708;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:26,42:68:99:1111,0,680 1 116260604 rs2997742 G A 500.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.636;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=0.285;SB=-9.900e+01;SOR=1.022;VQSLOD=10.37;culprit=FS GT:AD:DP:GQ:PL 0/1:14,18:32:99:529,0,360 1 116268178 . GAA G 538.70 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQ0=0;MQRankSum=2.327;POSITIVE_TRAIN_SITE;QD=12.24;RPA=23,21;RU=A;ReadPosRankSum=1.318;SB=-1.108e+02;SOR=0.793;STR;VQSLOD=2.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,26:59:99:569,0,177 1 116268283 rs4475752 C T 350.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.474;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.1456;MLEAC=1;MLEAF=0.500;MQ=60.98;MQ0=0;MQRankSum=-0.066;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=-1.088;SB=-3.300e+01;SOR=0.892;VQSLOD=3.33;culprit=FS GT:AD:DP:GQ:PL 0/1:10,12:22:99:379,0,318 1 116283343 rs9428083 A G 1533.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.50;SB=-8.450e+02;SOR=1.136;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1562,111,0 1 116283526 rs7538337 G A 951.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-2.251e+02;SOR=2.621;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:72:980,72,0 1 116287634 rs10801969 A G 540.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.805;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=-0.863;SB=-4.276e+01;SOR=0.544;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 0/1:9,17:26:99:569,0,276 1 116287651 rs10801970 G A 368.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.843;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.44;ReadPosRankSum=-0.927;SB=0.00;SOR=1.127;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:8,12:20:99:397,0,257 1 116287682 rs9428211 T C 209.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.14;ReadPosRankSum=-0.763;SB=0.00;SOR=0.836;VQSLOD=10.31;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:238,0,187 1 116310818 rs4484922 G C 244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=0.509;SB=0.00;SOR=0.818;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:273,0,237 1 116310967 rs4074536 T C 1549.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.540;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.717;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=0.381;SB=-6.460e+02;SOR=0.840;VQSLOD=8.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,60:115:99:1578,0,1367 1 116311198 rs4074537 T C 772.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=-3.577e+01;SOR=4.892;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:66:801,66,0 1 116399835 rs2811577 C T 179.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.952;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=1.693;SB=-6.700e+01;SOR=0.551;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:208,0,248 1 116534852 rs4046190 C T 1096.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.156;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=3.741;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=0.885;SB=-4.980e+02;SOR=1.081;VQSLOD=7.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,44:102:99:1125,0,1516 1 116534952 rs10923941 G T 636.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.074;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.972;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.19;ReadPosRankSum=0.421;SB=-1.040e+02;SOR=0.379;VQSLOD=9.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,21:35:99:665,0,432 1 116534953 rs10923942 C T 630.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.281;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.972;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.02;ReadPosRankSum=0.455;SB=-1.050e+02;SOR=0.379;VQSLOD=9.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,21:35:99:659,0,417 1 116569530 rs2488429 G C 892.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-3.750e+02;SOR=1.609;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:66:921,66,0 1 116574306 rs6666101 G A 381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=0.00;SOR=4.977;VQSLOD=8.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:410,33,0 1 116577981 rs1935828 G A 1328.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.41;SB=-2.740e+02;SOR=3.003;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:42:99:1357,102,0 1 116607254 rs1281748 G T 850.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;SB=0.00;SOR=6.358;VQSLOD=7.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:879,69,0 1 117142531 rs631461 G A 299.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.589;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.19;MQ0=1;MQRankSum=2.436;POSITIVE_TRAIN_SITE;QD=7.69;ReadPosRankSum=-0.277;SB=-5.400e+01;SOR=0.602;VQSLOD=2.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,13:39:99:328,0,787 1 117146124 rs584423 T C 706.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-0.261;SB=-2.670e+02;SOR=0.582;VQSLOD=9.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,28:55:99:735,0,796 1 117151079 rs74866769 G A 223.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.263;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=54.96;MQ0=0;MQRankSum=-3.044;QD=15.98;ReadPosRankSum=1.469;SB=0.00;SOR=0.976;VQSLOD=1.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,8:14:99:252,0,198 1 117151085 rs78995719 A G 245.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=54.55;MQ0=0;MQRankSum=-2.830;QD=18.91;ReadPosRankSum=1.071;SB=0.00;SOR=1.179;VQSLOD=1.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,8:13:99:274,0,151 1 117214318 . T TA 191.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;DP=30;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.61;RPA=9,10;RU=A;ReadPosRankSum=-0.585;SB=-4.900e+01;SOR=0.297;STR;VQSLOD=8.78;culprit=QD GT:AD:DP:GQ:PL 0/1:18,11:30:99:229,0,356 1 117236970 rs614477 G C 596.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.982;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.165;HaplotypeScore=1.8606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=-1.042;SB=-1.570e+02;SOR=1.044;VQSLOD=7.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,23:61:99:625,0,1006 1 117248565 . A G 896.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.853;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.00;ReadPosRankSum=1.352;SB=-3.860e+02;SOR=0.578;VQSLOD=8.09;culprit=FS GT:AD:DP:GQ:PL 0/1:36,33:69:99:925,0,1001 1 117487710 rs10159095 A G 3317.77 PASS AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SB=-1.511e+03;SOR=1.090;VQSLOD=3.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,99:99:99:3346,250,0 1 117487711 rs4546904 T A 3057.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=-1.514e+03;SOR=1.076;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:98:99:3086,238,0 1 117487884 rs10923173 G A 771.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.28;SB=-7.597e+01;SOR=3.816;VQSLOD=5.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:800,60,0 1 117491589 rs10801916 T C 365.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=0.00;SOR=4.977;VQSLOD=8.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:394,30,0 1 117503940 rs34625170 G A 2919.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.948;DB;DP=217;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=-1.122;SB=-1.377e+03;SOR=0.679;VQSLOD=6.26;culprit=DP GT:AD:DP:GQ:PL 0/1:114,103:217:99:2948,0,2859 1 117509981 rs12410651 G A 1272.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.605;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=2.811;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=0.040;SB=-3.780e+02;SOR=1.078;VQSLOD=7.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,49:109:99:1301,0,1658 1 117509987 rs12403233 C T 1249.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.366;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=1.758;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=-0.216;SB=-2.920e+02;SOR=0.915;VQSLOD=7.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,49:108:99:1278,0,1683 1 117510061 rs12403245 C T 394.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.001;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=6.629;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=1.191;SB=-1.709e+01;SOR=2.129;VQSLOD=5.54;culprit=FS GT:AD:DP:GQ:PL 0/1:23,14:37:99:423,0,612 1 117527645 rs36119404 GTCT G 1327.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;DB;DP=94;ExcessHet=3.0103;FS=3.538;MLEAC=1;MLEAF=0.500;MQ=60.23;MQ0=0;MQRankSum=1.960;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.00;RPA=3,2;RU=TCT;ReadPosRankSum=1.658;SB=-2.830e+02;SOR=1.174;STR;VQSLOD=0.214;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,29:94:99:1365,0,2878 1 117529458 rs10801922 G A 2192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.763;DB;DP=184;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=0.104;SB=-1.050e+03;SOR=0.706;VQSLOD=7.45;culprit=DP GT:AD:DP:GQ:PL 0/1:97,87:184:99:2221,0,2441 1 117555898 rs2764849 G A 720.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.03;SB=-2.271e+02;SOR=2.124;VQSLOD=5.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:57:749,57,0 1 117559598 rs60689130 C A 754.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.616;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-0.124;SB=-3.280e+02;SOR=0.678;VQSLOD=9.20;culprit=FS GT:AD:DP:GQ:PL 0/1:33,30:63:99:783,0,929 1 117559726 rs2249265 A G 2901.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.60;SB=-1.659e+03;SOR=0.809;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2930,226,0 1 117560036 rs17235766 G A 822.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.059;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-0.177;SB=-3.660e+02;SOR=0.890;VQSLOD=8.84;culprit=FS GT:AD:DP:GQ:PL 0/1:37,33:70:99:851,0,906 1 117560818 rs3736908 A G 1106.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.054;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.794;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=-1.437;SB=-4.860e+02;SOR=0.547;VQSLOD=9.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,44:99:99:1135,0,1471 1 117602960 rs2244501 C A 1083.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.475;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.846;HaplotypeScore=2.7801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-2.027;SB=-5.510e+02;SOR=0.524;VQSLOD=9.48;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:42,48:90:99:1112,0,1100 1 117603156 rs2274253 G T 595.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.371;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=-0.318;SB=-1.850e+02;SOR=1.044;VQSLOD=7.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,24:61:99:624,0,1094 1 117603188 rs2244406 G T 1522.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.61;SB=-2.341e+02;SOR=3.467;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1551,117,0 1 117617705 rs998532 A G 2374.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.92;SB=-9.080e+02;SOR=1.542;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2403,181,0 1 117618067 rs1289673 C T 1756.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8245;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-5.980e+02;SOR=1.791;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1785,135,0 1 117618722 rs1289672 T C 1571.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.93;SB=-2.520e+02;SOR=3.209;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1600,117,0 1 117622286 rs2801939 A G 2775.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.50;SB=-1.106e+03;SOR=1.855;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:2804,202,0 1 117631391 rs1555792 T C 1871.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-7.400e+02;SOR=1.812;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1900,138,0 1 117656088 rs1289658 A G 1010.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=3.876;HaplotypeScore=2.6639;MLEAC=1;MLEAF=0.500;MQ=59.95;MQ0=0;MQRankSum=0.911;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=0.450;SB=-5.190e+02;SOR=0.930;VQSLOD=0.156;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,42:95:99:1039,0,1394 1 117656276 rs1290530 A G 150.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.793;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.56;ReadPosRankSum=1.537;SB=-3.400e+01;SOR=0.175;VQSLOD=8.83;culprit=QD GT:AD:DP:GQ:PL 0/1:16,7:23:99:179,0,563 1 117660608 rs1289655 C T 739.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-2.291e+02;SOR=2.124;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:57:768,57,0 1 117660754 rs749902 C T 922.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.195;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=0.802;SB=-4.690e+02;SOR=0.761;VQSLOD=8.05;culprit=FS GT:AD:DP:GQ:PL 0/1:63,39:102:99:951,0,1670 1 117663913 rs3795655 C T 306.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.799;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=-1.099;SB=-2.302e+01;SOR=0.984;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:19,11:30:99:335,0,616 1 117690272 rs10754339 G A 901.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.40;SB=-1.951e+02;SOR=2.753;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:69:930,69,0 1 117696083 . AT A 79.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;DP=44;ExcessHet=3.0103;FS=3.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.49;RPA=19,18;RU=T;ReadPosRankSum=0.136;SB=-1.227e+01;SOR=1.385;STR;VQSLOD=4.55;culprit=QD GT:AD:DP:GQ:PL 0/1:20,12:44:99:117,0,397 1 117715026 rs6657810 C T 3299.77 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-1.826e+03;SOR=0.921;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:105:99:3328,244,0 1 117715987 rs146082329 A AAC 565.74 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.28;RPA=12,13;RU=AC;ReadPosRankSum=-0.448;SB=-1.295e+02;SOR=0.776;STR;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 0/1:2,15:20:30:603,0,30 1 117957288 rs1289948 A G 801.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.39;SB=-4.276e+01;SOR=4.712;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:830,60,0 1 118045747 rs12728046 A G 177.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.682;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=6.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=-0.925;SB=-5.150e-01;SOR=2.584;VQSLOD=5.52;culprit=FS GT:AD:DP:GQ:PL 0/1:10,6:16:99:206,0,255 1 118057263 rs45526845 G T 236.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.52;ReadPosRankSum=-0.191;SB=0.00;SOR=1.802;VQSLOD=8.41;culprit=FS GT:AD:DP:GQ:PL 0/1:3,8:11:87:265,0,87 1 118057646 rs12117874 T C 469.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.424;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-0.076;SB=-6.900e+01;SOR=0.638;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:19,18:37:99:498,0,575 1 118065841 rs1290558 A G 1384.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.936;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.894;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=-0.753;SB=-4.770e+02;SOR=0.960;VQSLOD=7.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,47:84:99:1413,0,886 1 118065919 rs12120771 T A 975.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.092;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.79;ReadPosRankSum=-0.228;SB=-6.870e+02;SOR=0.645;VQSLOD=8.48;culprit=QD GT:AD:DP:GQ:PL 0/1:66,45:112:99:1004,0,1635 1 118165328 rs844108 T C 1068.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.17;SB=-3.876e+01;SOR=5.421;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:84:1097,84,0 1 118165577 rs865443 C G 7802.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.786;DB;DP=249;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.34;ReadPosRankSum=-0.670;SB=-4.666e+03;SOR=0.821;VQSLOD=0.490;culprit=DP GT:AD:DP:GQ:PL 1/1:2,247:249:99:7831,524,0 1 118165691 rs1630312 C G 6275.77 PASS AC=2;AF=1.00;AN=2;DB;DP=197;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-3.566e+03;SOR=0.977;VQSLOD=5.03;culprit=DP GT:AD:DP:GQ:PL 1/1:0,197:197:99:6304,458,0 1 118165973 rs1627787 C T 4232.77 PASS AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4923;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=-2.250e+03;SOR=0.990;VQSLOD=5.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,136:137:99:4261,322,0 1 118166750 rs2066411 A G 399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5649;MLEAC=2;MLEAF=1.00;MQ=60.75;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=0.00;SOR=5.283;VQSLOD=7.99;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,13:13:33:428,33,0 1 118320859 rs1775749 T A 839.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.09;SB=-4.050e+02;SOR=1.044;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:66:868,66,0 1 118321119 rs114485606 T C 773.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.49;SB=-5.900e+02;SOR=0.804;VQSLOD=3.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:57:802,57,0 1 118420452 rs733833 C G 503.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.96;SB=0.00;SOR=5.283;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:532,39,0 1 118424269 rs10923444 C T 1374.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.73;SB=-4.680e+02;SOR=1.900;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1403,108,0 1 118429438 rs33946045 G GACA 431.75 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;RPA=2,3;RU=ACA;SB=0.00;SOR=4.407;STR;VQSLOD=7.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,8:10:24:469,24,0 1 118479484 . A G 1630.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.941;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.83;ReadPosRankSum=-0.607;SB=-1.020e+03;SOR=0.757;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 0/1:44,66:110:99:1659,0,1014 1 118484265 rs10733098 G A 1623.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-7.470e+02;SOR=1.201;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1652,129,0 1 118491215 . G GT 345.74 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQ0=0;MQRankSum=0.808;POSITIVE_TRAIN_SITE;QD=11.92;RPA=15,16;RU=T;ReadPosRankSum=1.196;SB=-3.120e+01;SOR=0.569;STR;VQSLOD=3.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,22:38:52:358,0,52 1 118495327 rs143943892 C G 1565.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.816;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=5.565;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-0.316;SB=-9.880e+02;SOR=0.363;VQSLOD=8.41;culprit=FS GT:AD:DP:GQ:PL 0/1:66,58:124:99:1594,0,1850 1 118501390 . C CT 194.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.11;RPA=16,17;RU=T;ReadPosRankSum=0.696;SB=-5.000e+01;SOR=0.519;STR;VQSLOD=8.13;culprit=QD GT:AD:DP:GQ:PL 0/1:11,13:25:99:232,0,145 1 118526592 rs4347199 G A 787.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.25;SB=-3.177e+01;SOR=4.892;VQSLOD=7.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:66:816,66,0 1 118565953 rs10923472 G A 539.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.908;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=6.375;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=0.457;SB=-1.150e+02;SOR=1.655;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 0/1:31,21:52:99:568,0,816 1 118583408 rs10923477 G A 765.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.980;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=0.478;SB=-4.280e+02;SOR=0.877;VQSLOD=8.48;culprit=FS GT:AD:DP:GQ:PL 0/1:49,33:83:99:794,0,1274 1 118617274 rs1935993 C T 601.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.042;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=-0.533;SB=-2.990e+02;SOR=1.206;VQSLOD=7.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,26:61:99:630,0,911 1 118623681 rs72288918 TACACAC T 472.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;RPA=16,13;RU=AC;ReadPosRankSum=0.940;SB=-8.300e+01;SOR=0.368;STR;VQSLOD=9.91;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:22:99:510,0,480 1 118644430 rs10754367 A G 553.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.242;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=1.820;SB=-2.080e+02;SOR=0.468;VQSLOD=9.44;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:27,22:49:99:582,0,737 1 118693217 rs1935992 T C 481.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.835;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=0.961;SB=-2.120e+02;SOR=0.298;VQSLOD=10.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,17:45:99:510,0,737 1 118727672 rs61838285 G T 1182.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.626;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=1.761;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=1.204;SB=-3.950e+02;SOR=0.938;VQSLOD=7.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,46:100:99:1211,0,1433 1 119157909 rs1009458 C T 256.80 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.68;SB=-1.881e+02;SOR=0.693;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:21:285,21,0 1 119427228 . G GA 48.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQ0=0;MQRankSum=1.782;QD=2.12;RPA=20,21;RU=A;ReadPosRankSum=-0.456;SB=-1.514e+01;SOR=0.495;STR;VQSLOD=1.58;culprit=QD GT:AD:DP:GQ:PL 0/1:17,6:24:86:86,0,197 1 119466275 rs4659129 A G 336.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.762;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=1.131;SB=-1.270e+02;SOR=0.250;VQSLOD=9.20;culprit=SOR GT:AD:DP:GQ:PL 0/1:17,13:30:99:365,0,451 1 119467127 rs1779437 C T 371.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.306;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.87;ReadPosRankSum=-1.055;SB=0.00;SOR=1.739;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 0/1:5,12:17:99:400,0,151 1 119923531 rs2224995 A C 1168.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;SB=-5.170e+02;SOR=1.432;VQSLOD=5.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:87:1197,87,0 1 119923724 rs2275607 T C 3272.77 PASS AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.96;SB=-1.909e+03;SOR=1.081;VQSLOD=4.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,113:113:99:3301,235,0 1 119925403 rs1341007 C T 2201.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.38;SB=-6.540e+02;SOR=2.105;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:69:99:2230,169,0 1 119925464 rs2298027 G A 3670.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.968;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.59;ReadPosRankSum=-0.866;SB=-1.443e+03;SOR=0.785;VQSLOD=5.01;culprit=FS GT:AD:DP:GQ:PL 1/1:1,119:120:99:3699,246,0 1 119927680 rs6667679 A G 2404.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-1.351e+03;SOR=1.012;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2433,178,0 1 119935507 rs10802092 A T 783.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.81;SB=0.00;SOR=6.184;VQSLOD=8.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:812,63,0 1 119936263 rs3765949 G A 1442.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-4.850e+02;SOR=1.814;VQSLOD=7.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1471,108,0 1 119985689 rs34576800 A G 1965.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.745;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=5.040;HaplotypeScore=2.6825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=1.812;SB=-1.148e+03;SOR=0.394;VQSLOD=7.61;culprit=FS GT:AD:DP:GQ:PL 0/1:75,69:144:99:1994,0,1876 1 119988071 rs10802094 C T 1503.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;SB=-8.910e+02;SOR=0.776;VQSLOD=5.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1532,117,0 1 119988404 rs10923823 C T 454.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=-2.790e+02;SOR=0.818;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:483,36,0 1 120050463 rs2236780 A G 448.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.34;SB=0.00;SOR=5.136;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:477,36,0 1 120057158 rs6203 C T 4056.77 PASS AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.94;SB=-1.531e+03;SOR=1.724;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,127:127:99:4085,301,0 1 120057246 rs1047303 C A 1414.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.51;SB=-7.697e+01;SOR=5.084;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1443,117,0 1 120085571 rs2208382 C A 253.80 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.38;SB=-1.573e+02;SOR=1.085;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:21:282,21,0 1 120088317 rs2885613 T C 387.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.24;SB=-2.590e+02;SOR=0.941;VQSLOD=5.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:30:416,30,0 1 120088356 rs2885614 A G 450.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.04;SB=-3.710e+02;SOR=0.693;VQSLOD=4.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:33:479,33,0 1 120088400 rs5009592 C T 428.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.80;SB=-1.991e+02;SOR=1.244;VQSLOD=3.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:33:457,33,0 1 120088430 rs6663497 C T 268.80 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.44;SB=-1.513e+02;SOR=1.270;VQSLOD=4.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:21:297,21,0 1 120110685 rs12745167 G A 844.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.25;SB=-5.920e+02;SOR=0.756;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:63:873,63,0 1 120110708 rs12745178 G T 770.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.53;SB=-3.720e+02;SOR=1.179;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:60:799,60,0 1 120165826 rs12076924 C T 605.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.677;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.492;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.36;ReadPosRankSum=1.452;SB=-2.680e+02;SOR=0.437;VQSLOD=8.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,22:33:99:634,0,297 1 120166681 rs12067843 G A 1083.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.714;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=0.885;SB=-6.550e+02;SOR=0.693;VQSLOD=8.75;culprit=FS GT:AD:DP:GQ:PL 0/1:44,44:88:99:1112,0,1050 1 120254545 rs562038 G C 335.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=0.00;SOR=4.804;VQSLOD=8.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:364,27,0 1 120263643 rs550174 T C 730.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.679;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=5.429;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.660;SB=-9.400e+01;SOR=1.863;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 0/1:24,23:47:99:759,0,610 1 120267431 rs55899400 G A 847.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.940;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.969;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-0.087;SB=-5.180e+02;SOR=0.453;VQSLOD=9.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,35:74:99:876,0,951 1 120283249 rs610404 A G 604.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.99;SB=-4.176e+01;SOR=4.294;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:633,48,0 1 120285546 rs543703 G A 1549.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.63;SB=-5.990e+02;SOR=1.609;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1578,117,0 1 120285865 . T C 664.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.897;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.45;ReadPosRankSum=-0.616;SB=-2.460e+02;SOR=1.038;VQSLOD=7.61;culprit=FS GT:AD:DP:GQ:PL 0/1:22,24:46:99:693,0,537 1 120293367 rs667246 T C 1979.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=-4.730e+02;SOR=2.797;VQSLOD=8.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2008,147,0 1 120293748 rs566864 T G 307.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-7.097e+01;SOR=2.303;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:336,24,0 1 120336876 rs699778 T G 1260.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-6.070e+02;SOR=1.236;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:96:1289,96,0 1 120337384 rs947270 T C 1422.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.16;SB=-2.211e+02;SOR=3.258;VQSLOD=4.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:41:99:1451,105,0 1 120337403 rs947271 A G 1267.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.96;SB=-3.876e+01;SOR=5.610;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:96:1296,96,0 1 120340918 rs1163541 G A 672.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=0.00;SOR=5.994;VQSLOD=8.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:701,57,0 1 120378678 rs3009182 C T 1279.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=4.757;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=0.140;SB=-5.790e+02;SOR=1.145;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 0/1:58,51:109:99:1308,0,1509 1 120380008 rs3009184 T A 51.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=8.674;HaplotypeScore=1.8519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.24;ReadPosRankSum=1.214;SB=-3.300e+01;SOR=0.027;VQSLOD=4.84;culprit=QD GT:AD:DP:GQ:PL 0/1:12,4:16:80:80,0,379 1 120384205 . A G 476.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.014;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.216;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.93;ReadPosRankSum=0.565;SB=-1.720e+02;SOR=1.304;VQSLOD=5.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,18:48:99:505,0,707 1 120387120 rs12405228 G A 475.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.732;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.82;ReadPosRankSum=-0.896;SB=-3.100e+01;SOR=2.187;VQSLOD=5.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,15:24:99:504,0,260 1 120404614 rs3850866 T C 246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.267;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=1.479;SB=-6.900e+01;SOR=0.593;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:5,11:16:99:275,0,131 1 120471424 rs2493393 C T 630.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-3.976e+01;SOR=4.294;VQSLOD=7.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:659,51,0 1 120478285 rs5025718 T C 1016.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.05;SB=-4.010e+02;SOR=1.885;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:81:1045,81,0 1 120480394 rs2453057 T C 367.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.27;SB=-3.477e+01;SOR=3.258;VQSLOD=7.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:396,30,0 1 120505996 rs10923929 G C 1276.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.92;SB=-3.920e+02;SOR=1.981;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:96:1305,96,0 1 120512104 rs2493409 T C 966.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-1.055e+02;SOR=3.841;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:75:995,75,0 1 120611365 rs2489099 G A 37.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.867;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.45;MQ0=0;MQRankSum=-2.232;POSITIVE_TRAIN_SITE;QD=2.91;ReadPosRankSum=0.338;SB=-1.765e+00;SOR=0.495;VQSLOD=3.12;culprit=QD GT:AD:DP:GQ:PL 0/1:10,3:13:66:66,0,290 1 120611496 rs138685616 C A 366.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9867;MLEAC=1;MLEAF=0.500;MQ=40.39;MQ0=15;MQRankSum=-5.481;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=5.92;ReadPosRankSum=-2.693;SB=-9.400e+01;SOR=1.112;VQSLOD=0.437;culprit=QD GT:AD:DP:GQ:PL 0/1:29,33:62:99:395,0,862 1 120611715 rs2794167 A G 1063.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.697;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.92;MQ0=5;MQRankSum=-4.458;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=-1.078;SB=-5.540e+02;SOR=0.758;VQSLOD=1.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,55:97:99:1092,0,1170 1 120611830 rs61790277 G A 464.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.400;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.06;MQ0=0;MQRankSum=-0.196;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=-1.395;SB=-2.150e+02;SOR=0.790;VQSLOD=0.057;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,16:32:99:493,0,469 1 120612168 rs11801102 C T 120.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9322;MLEAC=1;MLEAF=0.500;MQ=50.25;MQ0=0;MQRankSum=-0.459;QD=4.31;ReadPosRankSum=0.133;SB=-5.500e+01;SOR=0.976;VQSLOD=1.85;culprit=QD GT:AD:DP:GQ:PL 0/1:21,7:28:99:149,0,505 1 120612234 . G C 69.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.5461;MLEAC=1;MLEAF=0.500;MQ=47.20;MQ0=0;MQRankSum=2.653;QD=3.49;ReadPosRankSum=0.918;SB=-6.000e+01;SOR=0.425;VQSLOD=1.36;culprit=QD GT:AD:DP:GQ:PL 0/1:15,5:20:98:98,0,294 1 120612269 . A G 30.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9989;MLEAC=1;MLEAF=0.500;MQ=43.59;MQ0=0;MQRankSum=-0.111;QD=2.56;ReadPosRankSum=-1.399;SB=-9.732e-01;SOR=0.693;VQSLOD=1.54;culprit=QD GT:AD:DP:GQ:PL 0/1:10,2:12:59:59,0,180 1 120925663 rs827373 C T 411.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.45;SB=-1.493e+02;SOR=1.473;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:33:440,33,0 1 120926044 . T G 169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.96;MQ0=12;MQRankSum=-5.269;QD=2.93;ReadPosRankSum=0.818;SB=-6.100e+01;SOR=0.693;VQSLOD=0.528;culprit=QD GT:AD:DP:GQ:PL 0/1:33,25:58:99:198,0,962 1 120928637 rs117569447 G A 1568.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.919;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=50.99;MQ0=0;MQRankSum=-1.326;POSITIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=1.387;SB=-5.250e+02;SOR=0.650;VQSLOD=2.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,57:98:99:1597,0,1094 1 121484423 rs7368003 T C 393.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9154;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=28.13;SB=-8.497e+01;SOR=2.985;VQSLOD=5.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:33:422,33,0 1 121484503 rs4898086 T A 630.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.6710;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=25.23;SB=-3.140e+02;SOR=1.358;VQSLOD=3.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:48:659,48,0 1 121484566 rs4115066 A C 314.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.388;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8727;MLEAC=1;MLEAF=0.500;MQ=54.26;MQ0=0;MQRankSum=-0.607;QD=8.51;ReadPosRankSum=0.387;SB=-2.020e+02;SOR=0.901;VQSLOD=2.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,15:37:99:343,0,560 1 121484591 rs4898109 T A 1208.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=32.67;SB=-6.280e+02;SOR=0.859;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:93:1237,93,0 1 121484599 rs4898111 C G 252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3698;MLEAC=1;MLEAF=0.500;MQ=55.27;MQ0=0;MQRankSum=0.345;QD=6.65;ReadPosRankSum=-1.045;SB=-1.150e+02;SOR=0.917;VQSLOD=1.79;culprit=QD GT:AD:DP:GQ:PL 0/1:28,10:38:99:281,0,821 1 121484600 rs1825267 T C 234.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3698;MLEAC=1;MLEAF=0.500;MQ=55.27;MQ0=0;MQRankSum=0.345;QD=6.18;ReadPosRankSum=-1.062;SB=-9.800e+01;SOR=0.917;VQSLOD=1.75;culprit=QD GT:AD:DP:GQ:PL 0/1:28,10:38:99:263,0,825 1 121484602 . T C 733.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.5369;MLEAC=1;MLEAF=0.500;MQ=55.95;MQ0=0;MQRankSum=0.699;QD=19.83;ReadPosRankSum=1.996;SB=-4.070e+02;SOR=0.551;VQSLOD=1.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,26:38:99:762,0,227 1 121484685 rs9701937 A G 1376.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.8444;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=27.00;SB=-9.970e+02;SOR=0.732;VQSLOD=3.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1405,102,0 1 121484712 . T G 1210.77 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9512;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=28.83;SB=-7.640e+02;SOR=0.788;VQSLOD=2.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:96:1239,96,0 1 121484729 rs4092776 C T 1201.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.8179;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=32.48;SB=-6.250e+02;SOR=0.859;VQSLOD=4.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:96:1230,96,0 1 121484835 . A T 554.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.891;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3499;MLEAC=1;MLEAF=0.500;MQ=56.41;MQ0=0;MQRankSum=-2.296;QD=14.60;ReadPosRankSum=-1.031;SB=-2.780e+02;SOR=0.743;VQSLOD=2.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,23:38:99:583,0,362 1 121484847 rs2022553 T G 577.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.859;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.4489;MLEAC=1;MLEAF=0.500;MQ=57.09;MQ0=0;MQRankSum=-1.266;QD=15.62;ReadPosRankSum=-1.533;SB=-2.680e+02;SOR=0.936;VQSLOD=2.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,21:37:99:606,0,368 1 121484855 . T G 541.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.869;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=18.1934;MLEAC=1;MLEAF=0.500;MQ=57.62;MQ0=0;MQRankSum=-1.154;QD=14.64;ReadPosRankSum=-0.702;SB=-2.840e+02;SOR=0.566;VQSLOD=1.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,20:37:99:570,0,369 1 121484951 . T C 1120.77 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9940;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=30.29;SB=-6.880e+02;SOR=0.859;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:87:1149,87,0 1 121485001 . G A 991.77 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.8645;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=30.05;SB=-5.810e+02;SOR=0.880;VQSLOD=5.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:78:1020,78,0 1 121485012 rs28826338 A C 146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.658;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=16.8620;MLEAC=1;MLEAF=0.500;MQ=55.68;MQ0=0;MQRankSum=0.671;QD=4.45;ReadPosRankSum=-0.243;SB=-1.220e+02;SOR=0.573;VQSLOD=1.76;culprit=QD GT:AD:DP:GQ:PL 0/1:24,9:33:99:175,0,663 1 121485071 rs77401738 C A 2138.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.225;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.5475;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=-0.981;QD=28.90;ReadPosRankSum=-0.562;SB=-9.100e+02;SOR=0.488;VQSLOD=1.58;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,73:74:99:2167,135,0 1 121485088 rs7366682 T A 2640.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.7761;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=1;QD=30.35;SB=-1.044e+03;SOR=1.402;VQSLOD=4.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2669,208,0 1 121485099 rs1842865 T A 219.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.977;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=25.9263;MLEAC=1;MLEAF=0.500;MQ=50.60;MQ0=1;MQRankSum=1.359;QD=2.39;ReadPosRankSum=-0.369;SB=-9.800e+01;SOR=0.547;VQSLOD=0.091;culprit=QD GT:AD:DP:GQ:PL 0/1:79,13:93:99:248,0,2028 1 121485387 . C T 167.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=25.9800;MLEAC=1;MLEAF=0.500;MQ=51.62;MQ0=0;MQRankSum=1.381;QD=2.43;ReadPosRankSum=0.179;SB=-9.000e+01;SOR=0.485;VQSLOD=0.676;culprit=QD GT:AD:DP:GQ:PL 0/1:59,10:70:99:196,0,1675 1 121485416 rs6605018 C A 300.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.424;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.7967;MLEAC=1;MLEAF=0.500;MQ=49.49;MQ0=0;MQRankSum=-1.152;QD=9.40;ReadPosRankSum=-1.160;SB=-7.200e+01;SOR=0.693;VQSLOD=2.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,14:32:99:329,0,571 1 121485424 rs59029159 C A 97.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.121;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=18.8158;MLEAC=1;MLEAF=0.500;MQ=48.14;MQ0=0;MQRankSum=1.070;QD=4.07;ReadPosRankSum=-0.961;SB=-2.501e+01;SOR=0.476;VQSLOD=1.71;culprit=QD GT:AD:DP:GQ:PL 0/1:19,5:24:99:126,0,554 1 142542768 . G C 49.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.51;MQ0=1;MQRankSum=-0.916;QD=3.83;ReadPosRankSum=1.242;SB=-1.709e+01;SOR=0.551;VQSLOD=1.71;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:78:78,0,232 1 142542830 rs7514240 C T 130.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8305;MLEAC=1;MLEAF=0.500;MQ=47.87;MQ0=3;MQRankSum=-0.744;QD=4.51;ReadPosRankSum=0.696;SB=-8.100e+01;SOR=0.693;VQSLOD=1.23;culprit=QD GT:AD:DP:GQ:PL 0/1:19,10:29:99:159,0,459 1 142542976 rs7545982 T G 62.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.514;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=-1.664;QD=3.69;ReadPosRankSum=0.113;SB=-2.501e+01;SOR=0.693;VQSLOD=2.00;culprit=QD GT:AD:DP:GQ:PL 0/1:13,4:17:91:91,0,331 1 142620901 . A G 237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7781;MLEAC=1;MLEAF=0.500;MQ=50.46;MQ0=0;MQRankSum=-1.408;QD=19.81;ReadPosRankSum=-0.086;SB=0.00;SOR=1.981;VQSLOD=0.740;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,9:12:82:266,0,82 1 142620975 . T G 252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.588;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.4124;MLEAC=1;MLEAF=0.500;MQ=52.60;MQ0=0;MQRankSum=-1.206;QD=9.36;ReadPosRankSum=-1.156;SB=-1.320e+02;SOR=0.711;VQSLOD=2.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,10:33:99:281,0,401 1 142621095 rs4241034 T C 279.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.543;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.99;MQ0=0;MQRankSum=-2.901;QD=17.49;ReadPosRankSum=-1.819;SB=-8.201e+01;SOR=0.593;VQSLOD=1.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,12:16:99:308,0,120 1 142826369 rs149192684 C A 699.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=48.46;MQ0=2;MQRankSum=-5.215;QD=12.96;ReadPosRankSum=0.000;SB=-3.900e+02;SOR=0.570;VQSLOD=0.752;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,34:54:99:728,0,480 1 142826427 rs200473767 C T 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.651;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.99;MQ0=4;MQRankSum=-2.453;QD=2.98;ReadPosRankSum=-0.344;SB=-1.130e+02;SOR=0.616;VQSLOD=1.40;culprit=QD GT:AD:DP:GQ:PL 0/1:46,12:58:99:201,0,1039 1 142826805 rs201451744 T A 51.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.025;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.79;MQ0=1;MQRankSum=-2.212;QD=3.45;ReadPosRankSum=1.131;SB=-1.321e+01;SOR=1.112;VQSLOD=1.64;culprit=QD GT:AD:DP:GQ:PL 0/1:10,5:15:80:80,0,238 1 143187297 rs78641676 G C 310.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=31.08;SB=-8.197e+01;SOR=2.303;VQSLOD=4.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:339,24,0 1 143744160 rs61823125 G A 209.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=50.13;MQ0=0;MQRankSum=-3.655;QD=9.12;ReadPosRankSum=-1.047;SB=-1.390e+02;SOR=0.569;VQSLOD=1.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,11:23:99:238,0,260 1 144013853 rs6600697 T C 1496.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.773;DB;DP=236;Dels=0.00;ExcessHet=3.0103;FS=7.680;HaplotypeScore=8.1488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.34;ReadPosRankSum=-0.497;SB=-2.580e+02;SOR=1.328;VQSLOD=0.341;culprit=QD GT:AD:DP:GQ:PL 0/1:179,57:236:99:1525,0,4957 1 144014051 rs1884147 G A 1057.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.221;DB;DP=189;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-0.389;SB=-3.330e+02;SOR=0.722;VQSLOD=3.61;culprit=QD GT:AD:DP:GQ:PL 0/1:139,50:189:99:1086,0,4244 1 144014068 rs1884146 T C 2476.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.449;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=1.688;HaplotypeScore=2.8657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.96;ReadPosRankSum=0.280;SB=-7.080e+02;SOR=0.544;VQSLOD=6.86;culprit=DP GT:AD:DP:GQ:PL 0/1:54,92:146:99:2505,0,1518 1 144014234 rs6600695 A G 58.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-1.440;SB=0.00;SOR=0.223;VQSLOD=7.91;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:87:87,0,237 1 144052641 . CAAA C 745.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;DP=58;ExcessHet=3.0103;FS=11.604;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;RPA=26,23;RU=A;ReadPosRankSum=0.397;SB=-3.070e+02;SOR=0.034;STR;VQSLOD=5.46;culprit=FS GT:AD:DP:GQ:PL 0/1:24,32:58:99:720,0,470 1 144614906 rs372156677 T C 115.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=47.43;MQ0=0;MQRankSum=-0.950;QD=10.52;ReadPosRankSum=-0.437;SB=-1.000e+02;SOR=0.446;VQSLOD=2.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,6:11:98:144,0,98 1 144614931 rs149803590 G A 101.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.11;MQ0=0;MQRankSum=0.543;QD=10.18;ReadPosRankSum=0.200;SB=-3.401e+01;SOR=0.693;VQSLOD=1.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,5:10:99:130,0,138 1 144615138 rs9441132 T G 42.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.99;MQ0=1;MQRankSum=-1.746;QD=3.29;ReadPosRankSum=-0.984;SB=-1.765e+00;SOR=0.223;VQSLOD=2.01;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:71:71,0,241 1 144617179 rs12059286 T C 465.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.067;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=7.125;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=54.23;MQ0=1;MQRankSum=-3.742;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=0.334;SB=-2.290e+02;SOR=1.127;VQSLOD=0.330;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,20:38:99:494,0,423 1 144617251 rs12057989 A G 521.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.201;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.02;MQ0=0;MQRankSum=-2.013;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=0.280;SB=-2.630e+02;SOR=0.656;VQSLOD=3.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,20:28:99:550,0,186 1 144617926 rs372903858 G A 49.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.00;MQ0=0;MQRankSum=-3.087;QD=4.15;ReadPosRankSum=-2.093;SB=0.00;SOR=0.269;VQSLOD=1.23;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:78:78,0,293 1 144618031 rs75744363 G A 296.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.294;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=42.65;MQ0=3;MQRankSum=3.048;POSITIVE_TRAIN_SITE;QD=2.83;ReadPosRankSum=-0.097;SB=-1.570e+02;SOR=0.551;VQSLOD=1.00;culprit=QD GT:AD:DP:GQ:PL 0/1:85,20:105:99:325,0,1943 1 144619346 rs4649563 G A 856.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.859;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=44.55;MQ0=10;MQRankSum=0.208;QD=8.65;ReadPosRankSum=1.593;SB=-3.480e+02;SOR=0.708;VQSLOD=0.563;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,38:100:99:885,0,1288 1 144619354 rs4067644 C T 855.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.825;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=45.30;MQ0=10;MQRankSum=0.073;QD=8.00;ReadPosRankSum=1.382;SB=-3.660e+02;SOR=0.783;VQSLOD=0.315;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:67,40:107:99:884,0,1287 1 144811924 rs320821 T G 1209.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=3;POSITIVE_TRAIN_SITE;QD=26.88;SB=-6.180e+02;SOR=1.259;VQSLOD=6.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:90:1238,90,0 1 144816211 rs61807096 G A 454.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=1;QD=34.98;SB=0.00;SOR=5.136;VQSLOD=7.94;culprit=SOR GT:AD:DP:GQ:PL 1/1:1,12:13:36:483,36,0 1 144852203 rs74872612 T G 156.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.268;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.13;MQ0=1;MQRankSum=-3.268;QD=12.06;ReadPosRankSum=-0.852;SB=0.00;SOR=0.693;VQSLOD=1.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,7:13:99:185,0,204 1 144852235 rs75842891 T C 229.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.167;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.33;MQ0=3;MQRankSum=-4.259;QD=10.94;ReadPosRankSum=-0.258;SB=-2.302e+01;SOR=0.693;VQSLOD=1.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,12:21:99:258,0,261 1 144852236 rs78034674 C G 211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.439;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.64;MQ0=3;MQRankSum=-3.821;QD=9.63;ReadPosRankSum=-0.572;SB=-2.303e+01;SOR=0.804;VQSLOD=1.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,13:22:99:240,0,283 1 144852249 rs1055317 C T 249.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.847;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9780;MLEAC=1;MLEAF=0.500;MQ=44.31;MQ0=4;MQRankSum=-4.099;QD=9.99;ReadPosRankSum=0.564;SB=-2.004e+01;SOR=1.179;VQSLOD=1.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,14:25:99:278,0,314 1 144852254 rs77608804 G C 150.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.470;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9780;MLEAC=1;MLEAF=0.500;MQ=46.25;MQ0=4;MQRankSum=-2.299;QD=5.38;ReadPosRankSum=0.318;SB=-2.004e+01;SOR=0.358;VQSLOD=1.79;culprit=QD GT:AD:DP:GQ:PL 0/1:21,7:28:99:179,0,520 1 144852390 rs61804988 C T 575.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.01;MQ0=0;MQRankSum=-3.341;QD=12.79;ReadPosRankSum=-0.239;SB=-3.730e+02;SOR=0.610;VQSLOD=1.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,23:45:99:604,0,627 1 144852545 rs1699760 C T 157.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9995;MLEAC=1;MLEAF=0.500;MQ=49.38;MQ0=0;MQRankSum=-0.947;QD=10.52;ReadPosRankSum=1.157;SB=-1.765e+00;SOR=1.230;VQSLOD=1.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,6:15:99:186,0,245 1 144854095 rs4997149 G T 87.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.75;ReadPosRankSum=-1.705;SB=0.00;SOR=0.223;VQSLOD=7.86;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:99:116,0,324 1 144854180 rs4997148 T C 438.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.212;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQ0=0;MQRankSum=-4.513;QD=6.65;ReadPosRankSum=-0.389;SB=-5.300e+01;SOR=0.468;VQSLOD=0.631;culprit=QD GT:AD:DP:GQ:PL 0/1:48,18:66:99:467,0,1631 1 144854351 rs599643 A C 4424.77 PASS AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4092;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=30.94;SB=-2.057e+03;SOR=1.345;VQSLOD=4.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,143:143:99:4453,328,0 1 144854397 rs833193 T C 3349.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7426;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-1.494e+03;SOR=1.190;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:3378,250,0 1 144854412 rs77812232 A C 836.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.066;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.0272;MLEAC=1;MLEAF=0.500;MQ=57.41;MQ0=0;MQRankSum=2.423;QD=9.62;ReadPosRankSum=0.514;SB=-3.620e+02;SOR=0.768;VQSLOD=0.321;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:57,30:87:99:865,0,1790 1 144854454 rs2274129 A C 958.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.254;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.5760;MLEAC=1;MLEAF=0.500;MQ=55.07;MQ0=1;MQRankSum=-5.757;QD=12.29;ReadPosRankSum=-0.287;SB=-3.860e+02;SOR=0.855;VQSLOD=8.400e-03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,36:78:99:987,0,1327 1 144854730 rs75855616 A G 233.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.755;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.72;MQ0=0;MQRankSum=-2.223;QD=6.68;ReadPosRankSum=0.018;SB=0.00;SOR=0.165;VQSLOD=2.01;culprit=QD GT:AD:DP:GQ:PL 0/1:25,10:35:99:262,0,850 1 144854750 rs75538208 G A 197.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.938;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.28;MQ0=0;MQRankSum=-1.924;QD=7.61;ReadPosRankSum=-1.591;SB=0.00;SOR=0.269;VQSLOD=1.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,9:26:99:226,0,608 1 144854761 rs79445592 T C 68.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.305;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.75;MQ0=0;MQRankSum=-2.429;QD=3.44;ReadPosRankSum=-0.262;SB=0.00;SOR=0.132;VQSLOD=1.95;culprit=QD GT:AD:DP:GQ:PL 0/1:15,5:20:97:97,0,521 1 144854765 rs78741893 T C 48.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.134;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.49;MQ0=0;MQRankSum=-2.625;QD=2.71;ReadPosRankSum=0.266;SB=0.00;SOR=0.105;VQSLOD=1.47;culprit=QD GT:AD:DP:GQ:PL 0/1:14,4:18:77:77,0,446 1 144857068 rs905324 A T 125.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.763;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQ0=0;MQRankSum=-0.748;QD=11.43;ReadPosRankSum=-0.522;SB=0.00;SOR=0.551;VQSLOD=2.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,5:11:99:154,0,195 1 144859720 rs678786 G C 410.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.23;SB=-4.276e+01;SOR=3.611;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:439,33,0 1 144859929 rs2798851 C T 594.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=7.230;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.89;ReadPosRankSum=-0.533;SB=-3.210e+02;SOR=0.915;VQSLOD=4.52;culprit=QD GT:AD:DP:GQ:PL 0/1:72,29:101:99:623,0,1930 1 144860026 rs1699819 G C 905.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.425;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQ0=0;MQRankSum=-0.412;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.872;SB=-3.640e+02;SOR=0.417;VQSLOD=0.114;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,35:63:99:934,0,796 1 144863208 rs1699813 A G 353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.427;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9963;MLEAC=1;MLEAF=0.500;MQ=57.38;MQ0=0;MQRankSum=-2.045;QD=9.07;ReadPosRankSum=-0.329;SB=-2.510e+02;SOR=0.616;VQSLOD=2.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,16:39:99:382,0,554 1 144863613 rs1699812 C T 1074.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.737;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.14;ReadPosRankSum=-1.031;SB=-9.200e+01;SOR=0.787;VQSLOD=7.83;culprit=FS GT:AD:DP:GQ:PL 0/1:34,37:71:99:1103,0,922 1 144864454 rs1747948 G A 1341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.840;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.42;ReadPosRankSum=-1.966;SB=0.00;SOR=0.671;VQSLOD=7.39;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:44,43:87:99:1370,0,1495 1 144864491 rs1698595 T C 505.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.824;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.76;ReadPosRankSum=0.893;SB=0.00;SOR=0.446;VQSLOD=8.35;culprit=FS GT:AD:DP:GQ:PL 0/1:27,20:47:99:534,0,897 1 144865627 rs745937 T C 124.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.340;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.93;ReadPosRankSum=0.739;SB=0.00;SOR=0.169;VQSLOD=9.73;culprit=QD GT:AD:DP:GQ:PL 0/1:13,5:18:99:153,0,376 1 144865850 rs1613780 G T 2207.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.658;DB;DP=202;Dels=0.00;ExcessHet=3.0103;FS=0.517;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=-0.456;SB=-1.407e+03;SOR=0.645;VQSLOD=6.62;culprit=DP GT:AD:DP:GQ:PL 0/1:107,95:202:99:2236,0,2798 1 144866509 rs924667 G A 919.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.645;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.711;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.60;ReadPosRankSum=0.860;SB=-1.590e+02;SOR=1.172;VQSLOD=6.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,32:63:99:948,0,771 1 144866643 rs1620560 G A 1381.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.533;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=8.029;HaplotypeScore=2.7129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=-0.441;SB=-6.200e+02;SOR=1.371;VQSLOD=4.24;culprit=FS GT:AD:DP:GQ:PL 0/1:78,55:133:99:1410,0,1903 1 144866662 rs1064044 T C 1368.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.129;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=3.314;HaplotypeScore=3.6394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.418;SB=-6.220e+02;SOR=1.026;VQSLOD=7.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:71,55:126:99:1397,0,1762 1 144866688 rs1698597 G A 511.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.060;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.70;ReadPosRankSum=1.173;SB=-2.630e+02;SOR=0.674;VQSLOD=7.11;culprit=QD GT:AD:DP:GQ:PL 0/1:83,26:110:99:540,0,2121 1 144868170 rs1628310 C T 1163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.650;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=3.826;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=0.119;SB=-1.670e+02;SOR=1.281;VQSLOD=7.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,44:91:99:1192,0,1295 1 144868204 rs1747951 A C 681.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.820;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=0.776;SB=-1.765e+00;SOR=1.418;VQSLOD=8.38;culprit=FS GT:AD:DP:GQ:PL 0/1:26,22:48:99:710,0,815 1 144868239 rs1618966 G A 202.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.915;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.80;ReadPosRankSum=0.862;SB=0.00;SOR=0.202;VQSLOD=7.50;culprit=QD GT:AD:DP:GQ:PL 0/1:18,8:26:99:231,0,604 1 144871738 rs1698605 C A 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=5.219;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=1.743;SB=-2.657e-01;SOR=2.303;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:163,0,219 1 144871755 rs1778159 A T 146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.697;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=4.467;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.17;ReadPosRankSum=0.671;SB=-5.700e+01;SOR=1.546;VQSLOD=5.00;culprit=QD GT:AD:DP:GQ:PL 0/1:9,7:16:99:175,0,247 1 144871782 rs1778158 A G 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.09;ReadPosRankSum=-0.702;SB=-9.600e+01;SOR=0.976;VQSLOD=7.87;culprit=FS GT:AD:DP:GQ:PL 0/1:11,8:19:99:201,0,354 1 144871889 rs1698606 A C 300.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.602;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=0.054;SB=-1.700e+02;SOR=0.859;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:13,12:25:99:329,0,293 1 144873794 rs1610833 C T 1342.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.141;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=6.924;HaplotypeScore=2.6320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.55;ReadPosRankSum=1.498;SB=-3.000e+02;SOR=1.402;VQSLOD=3.95;culprit=FS GT:AD:DP:GQ:PL 0/1:58,49:107:99:1371,0,1479 1 144874088 rs1419158 G C 964.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.431;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8098;MLEAC=1;MLEAF=0.500;MQ=60.12;MQ0=0;MQRankSum=0.018;QD=12.06;ReadPosRankSum=-0.721;SB=-2.080e+02;SOR=0.626;VQSLOD=1.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,36:80:99:993,0,1359 1 144874489 rs1699788 G A 214.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.48;ReadPosRankSum=1.440;SB=0.00;SOR=1.609;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:82:243,0,82 1 144874641 rs1610771 G C 2013.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.145;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=2.145;SB=-6.540e+02;SOR=0.642;VQSLOD=8.18;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:57,69:126:99:2042,0,1646 1 144874760 rs1610774 T C 2518.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=11.725;DB;DP=220;Dels=0.00;ExcessHet=3.0103;FS=6.564;HaplotypeScore=10.2812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=-0.073;SB=-1.303e+03;SOR=1.065;VQSLOD=4.76;culprit=DP GT:AD:DP:GQ:PL 0/1:123,96:220:99:2547,0,2973 1 144874815 rs1778155 T C 659.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.640;DB;DP=166;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.133;SB=-2.910e+02;SOR=0.689;VQSLOD=4.20;culprit=QD GT:AD:DP:GQ:PL 0/1:131,35:166:99:688,0,3733 1 144874928 rs1778154 G A 98.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=13.163;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.29;ReadPosRankSum=-0.859;SB=-7.597e+01;SOR=0.007;VQSLOD=4.33;culprit=QD GT:AD:DP:GQ:PL 0/1:23,7:30:99:127,0,826 1 144874950 rs1747957 G A 211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.205;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=4.260;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.82;ReadPosRankSum=0.269;SB=-3.577e+01;SOR=0.076;VQSLOD=9.02;culprit=QD GT:AD:DP:GQ:PL 0/1:15,9:24:99:240,0,545 1 144875799 rs764983 G A 953.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.823;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.63;ReadPosRankSum=1.053;SB=-3.010e+02;SOR=0.566;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 0/1:31,39:70:99:982,0,845 1 144877366 rs1807092 A G 618.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.681;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.492;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.73;ReadPosRankSum=2.200;SB=-1.600e+02;SOR=0.442;VQSLOD=7.64;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:19,23:42:99:647,0,537 1 144877390 rs1807093 G A 498.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.429;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.876;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.47;ReadPosRankSum=0.201;SB=-7.697e+01;SOR=0.211;VQSLOD=8.17;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,17:27:99:527,0,335 1 144878899 rs2653677 C G 199.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.964;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=4.024;HaplotypeScore=2.6159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.63;ReadPosRankSum=1.005;SB=-8.000e+01;SOR=0.122;VQSLOD=4.10;culprit=QD GT:AD:DP:GQ:PL 0/1:62,14:76:99:228,0,1970 1 144878928 rs2762876 G T 1135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.729;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=4.289;HaplotypeScore=5.2770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.71;ReadPosRankSum=1.150;SB=-4.290e+02;SOR=0.330;VQSLOD=6.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:69,48:118:99:1164,0,2075 1 144879090 rs1778120 T C 685.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.961;DB;DP=215;Dels=0.00;ExcessHet=3.0103;FS=0.655;HaplotypeScore=1.8936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.19;ReadPosRankSum=-1.216;SB=-4.170e+02;SOR=0.624;VQSLOD=2.49;culprit=QD GT:AD:DP:GQ:PL 0/1:176,39:215:99:714,0,4878 1 144879264 rs2798901 A G 911.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.871;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.466;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=-0.203;SB=-4.520e+02;SOR=0.475;VQSLOD=8.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,31:51:99:940,0,494 1 144879375 rs1747958 T C 1535.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.807;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=3.507;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=1.136;SB=-5.970e+02;SOR=0.372;VQSLOD=7.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:73,58:132:99:1564,0,2012 1 144880814 rs1747960 G A 143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=11.346;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.15;ReadPosRankSum=1.435;SB=-1.091e-04;SOR=2.678;VQSLOD=4.11;culprit=QD GT:AD:DP:GQ:PL 0/1:58,9:67:99:172,0,1646 1 144881389 rs1614163 T C 181.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=-0.792;SB=0.00;SOR=0.859;VQSLOD=10.43;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:210,0,163 1 144881419 . T C 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.729;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.607;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-0.336;SB=-2.657e-01;SOR=1.480;VQSLOD=3.61;culprit=QD GT:AD:DP:GQ:PL 0/1:22,6:28:99:163,0,634 1 144881583 rs2762877 A G 769.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.410;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=1.778;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.46;ReadPosRankSum=-0.042;SB=-4.520e+02;SOR=0.736;VQSLOD=6.20;culprit=QD GT:AD:DP:GQ:PL 0/1:59,32:91:99:798,0,1631 1 144881711 rs937714 T G 236.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.421;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.606;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.96;ReadPosRankSum=0.957;SB=-5.150e-01;SOR=1.392;VQSLOD=4.39;culprit=QD GT:AD:DP:GQ:PL 0/1:25,9:34:99:265,0,756 1 144882581 rs1699836 A G 1074.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=2.768;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=-1.729;SB=-5.080e+02;SOR=0.442;VQSLOD=8.76;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:63,39:102:99:1103,0,2044 1 144882823 rs1698647 C T 2706.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.844;DB;DP=237;Dels=0.00;ExcessHet=3.0103;FS=0.494;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=0.758;SB=-1.211e+03;SOR=0.789;VQSLOD=5.09;culprit=DP GT:AD:DP:GQ:PL 0/1:124,112:237:99:2735,0,3412 1 144882912 rs1698646 G T 351.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.174;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=1.461;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.14;ReadPosRankSum=0.543;SB=-7.100e+01;SOR=0.378;VQSLOD=7.07;culprit=QD GT:AD:DP:GQ:PL 0/1:67,18:85:99:380,0,2207 1 144886063 rs1625285 T C 646.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.728;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.285;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=-0.462;SB=-2.910e+02;SOR=0.380;VQSLOD=9.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,25:44:99:675,0,514 1 144886092 rs1343472 C T 818.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.283;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.013;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=0.780;SB=-4.350e+02;SOR=0.481;VQSLOD=9.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,32:61:99:847,0,700 1 144886197 rs1698624 A T 1297.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=8.514;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=0.380;SB=-4.600e+02;SOR=1.641;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 0/1:47,48:95:99:1326,0,1164 1 144886409 rs1620507 A C 479.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.99;ReadPosRankSum=-1.248;SB=-4.276e+01;SOR=0.250;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 0/1:14,16:30:99:508,0,469 1 144890833 rs11447 T C 201.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.549;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.87;ReadPosRankSum=1.370;SB=-1.765e+00;SOR=1.270;VQSLOD=7.67;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:230,0,344 1 144890844 . T G 131.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.73;ReadPosRankSum=0.701;SB=-3.200e+01;SOR=0.275;VQSLOD=7.98;culprit=QD GT:AD:DP:GQ:PL 0/1:17,6:23:99:160,0,537 1 144892368 rs1698708 A T 430.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.273;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.961;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.958;SB=-2.430e+02;SOR=0.506;VQSLOD=6.60;culprit=QD GT:AD:DP:GQ:PL 0/1:66,21:87:99:459,0,1956 1 144895460 rs1698703 C T 158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.359;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.855;SB=-4.400e+01;SOR=1.179;VQSLOD=6.08;culprit=QD GT:AD:DP:GQ:PL 0/1:34,10:44:99:187,0,879 1 144910082 rs638780 A G 934.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-3.300e+02;SOR=2.019;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:72:963,72,0 1 144911702 rs1747928 C A 165.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.58;ReadPosRankSum=0.608;SB=0.00;SOR=1.085;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:194,0,131 1 144911704 rs1778105 G C 183.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.38;ReadPosRankSum=0.608;SB=0.00;SOR=1.085;VQSLOD=8.56;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:212,0,135 1 144911855 . C T 298.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.221;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.34;ReadPosRankSum=0.208;SB=-1.720e+02;SOR=0.432;VQSLOD=7.07;culprit=QD GT:AD:DP:GQ:PL 0/1:42,14:56:99:327,0,1190 1 144912233 . C T 256.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.313;DP=18;Dels=0.00;ExcessHet=3.0103;FS=8.218;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.26;ReadPosRankSum=0.181;SB=-1.550e+02;SOR=0.367;VQSLOD=3.90;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:285,0,237 1 144915412 rs1698684 T C 313.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.300;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.305;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.98;ReadPosRankSum=0.538;SB=-5.300e+01;SOR=0.941;VQSLOD=5.00;culprit=QD GT:AD:DP:GQ:PL 0/1:49,14:63:99:342,0,1325 1 144915561 rs1778111 G A 1024.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.306;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=1.953;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=-1.594;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=0.256;SB=-5.500e+02;SOR=0.454;VQSLOD=0.109;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,44:81:99:1053,0,988 1 144916486 rs1699798 T G 305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.38;ReadPosRankSum=-1.661;SB=0.00;SOR=1.473;VQSLOD=8.06;culprit=FS GT:AD:DP:GQ:PL 0/1:5,10:15:99:334,0,144 1 144916493 rs1699799 A G 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.365;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.05;ReadPosRankSum=-1.034;SB=0.00;SOR=1.244;VQSLOD=8.43;culprit=FS GT:AD:DP:GQ:PL 0/1:6,10:16:99:317,0,191 1 144916676 rs1698683 C T 429.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.883;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.07;ReadPosRankSum=0.265;SB=-2.210e+02;SOR=0.644;VQSLOD=5.90;culprit=QD GT:AD:DP:GQ:PL 0/1:116,24:140:99:458,0,3276 1 144916748 rs1747930 C G 1728.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.140;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=3.359;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=-0.302;SB=-9.070e+02;SOR=0.448;VQSLOD=8.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,67:129:99:1757,0,1598 1 144917546 rs1698682 A G 1396.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.704;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=-0.275;SB=-8.050e+02;SOR=0.713;VQSLOD=8.42;culprit=FS GT:AD:DP:GQ:PL 0/1:79,54:133:99:1425,0,2077 1 144918994 rs2134388 G T 338.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.257;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.896;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.53;ReadPosRankSum=0.895;SB=-1.090e+02;SOR=1.289;VQSLOD=4.87;culprit=QD GT:AD:DP:GQ:PL 0/1:31,14:45:99:367,0,847 1 144919094 rs1698680 C T 122.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.250;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.22;ReadPosRankSum=-0.604;SB=-1.765e+00;SOR=0.963;VQSLOD=7.60;culprit=QD GT:AD:DP:GQ:PL 0/1:11,6:17:99:151,0,362 1 144922109 rs1343469 A G 2539.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.505;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=0.603;HaplotypeScore=2.7787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.39;ReadPosRankSum=0.067;SB=-1.472e+03;SOR=0.787;VQSLOD=7.04;culprit=DP GT:AD:DP:GQ:PL 0/1:64,91:155:99:2568,0,1688 1 144922171 rs1343470 C T 2626.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=0.523;SB=-1.465e+03;SOR=0.723;VQSLOD=7.86;culprit=DP GT:AD:DP:GQ:PL 0/1:65,99:165:99:2655,0,1556 1 144922252 rs147451175 C G 959.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.724;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=1.786;HaplotypeScore=3.5671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.57;ReadPosRankSum=-0.916;SB=-2.550e+02;SOR=1.058;VQSLOD=6.39;culprit=QD GT:AD:DP:GQ:PL 0/1:74,38:112:99:988,0,2172 1 144922583 rs1359300 G A 817.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.790;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.79;ReadPosRankSum=1.077;SB=-4.110e+02;SOR=1.047;VQSLOD=5.77;culprit=QD GT:AD:DP:GQ:PL 0/1:67,38:105:99:846,0,1667 1 144923503 rs1778126 C T 160.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.08;ReadPosRankSum=-0.006;SB=0.00;SOR=1.085;VQSLOD=8.28;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:189,0,118 1 144923535 rs1778127 A G 451.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.723;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.64;ReadPosRankSum=0.252;SB=0.00;SOR=1.179;VQSLOD=7.91;culprit=FS GT:AD:DP:GQ:PL 0/1:9,14:24:99:480,0,236 1 144923823 rs11268079 TAGGAAGAAACGGCA T 8690.73 PASS AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;RPA=2,1;RU=AGGAAGAAACGGCA;SB=-6.831e+02;SOR=4.370;STR;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:93:99:8728,172,0 1 144930571 rs2762866 C A 921.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.358;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=1.184;SB=-3.150e+02;SOR=0.818;VQSLOD=8.88;culprit=FS GT:AD:DP:GQ:PL 0/1:33,36:69:99:950,0,888 1 144930596 rs2762867 C A 999.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.861;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=1.606;SB=-5.560e+02;SOR=0.516;VQSLOD=9.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,42:84:99:1028,0,1137 1 144930940 rs2147326 T C 2564.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.966;DB;DP=217;Dels=0.00;ExcessHet=3.0103;FS=1.647;HaplotypeScore=3.7816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=1.212;SB=-1.648e+03;SOR=0.582;VQSLOD=6.48;culprit=DP GT:AD:DP:GQ:PL 0/1:117,100:217:99:2593,0,3103 1 144931330 rs2762745 C T 3315.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-12.838;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=-0.863;SB=-1.475e+03;SOR=0.661;VQSLOD=5.46;culprit=DP GT:AD:DP:GQ:PL 0/1:127,122:250:99:3344,0,3733 1 144931392 rs2798893 G A 3482.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.211;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.464;HaplotypeScore=6.6608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=1.183;SB=-1.882e+03;SOR=0.784;VQSLOD=4.87;culprit=DP GT:AD:DP:GQ:PL 0/1:122,128:250:99:3511,0,3511 1 144931581 rs2762744 C G 1180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=4.648;HaplotypeScore=2.8601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.74;ReadPosRankSum=-0.227;SB=-4.060e+02;SOR=1.060;VQSLOD=1.83;culprit=QD GT:AD:DP:GQ:PL 0/1:197,52:249:99:1209,0,5545 1 144931727 rs2985363 G A 463.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.976;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=2.103;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.53;ReadPosRankSum=-0.390;SB=-6.100e+01;SOR=0.237;VQSLOD=7.03;culprit=QD GT:AD:DP:GQ:PL 0/1:51,20:71:99:492,0,1810 1 144946510 rs2488977 C T 1606.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.47;SB=-3.250e+02;SOR=2.833;VQSLOD=7.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1635,120,0 1 144946768 rs2762733 G A 1144.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.274;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.579;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-0.694;SB=-3.000e+02;SOR=1.284;VQSLOD=7.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,43:79:99:1173,0,1004 1 144946876 . 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G C 167.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.98;ReadPosRankSum=-1.935;SB=0.00;SOR=0.693;VQSLOD=8.08;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:6,6:12:99:196,0,205 1 144994658 rs1664022 C A 4343.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.568;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=8.075;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=-0.713;SB=-2.334e+03;SOR=0.383;VQSLOD=0.360;culprit=DP GT:AD:DP:GQ:PL 0/1:108,142:250:99:4372,0,3241 1 144994902 rs4649499 G A 1266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.829;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=1.175;HaplotypeScore=2.8213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-1.141;SB=-6.080e+02;SOR=0.831;VQSLOD=0.937;culprit=QD GT:AD:DP:GQ:PL 0/1:192,58:250:99:1295,0,5747 1 145014053 rs548602 T C 238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.834;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=1.163;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.81;ReadPosRankSum=1.685;SB=-9.300e+01;SOR=0.965;VQSLOD=2.01;culprit=QD GT:AD:DP:GQ:PL 0/1:72,13:85:99:267,0,1955 1 145014103 rs1778711 G C 1097.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.460;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=7.134;HaplotypeScore=3.3471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.91;ReadPosRankSum=-0.673;SB=-6.640e+02;SOR=0.450;VQSLOD=4.27;culprit=FS GT:AD:DP:GQ:PL 0/1:43,42:85:99:1126,0,1177 1 145014263 rs1778708 C T 726.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.0988;MLEAC=1;MLEAF=0.500;MQ=60.27;MQ0=0;MQRankSum=1.958;QD=9.08;ReadPosRankSum=-0.151;SB=-4.020e+02;SOR=0.608;VQSLOD=1.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,28:80:99:755,0,1333 1 145014394 rs1107089 C T 484.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.942;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.64;ReadPosRankSum=0.138;SB=-7.001e+01;SOR=0.368;VQSLOD=8.09;culprit=FS GT:AD:DP:GQ:PL 0/1:15,16:31:99:513,0,415 1 145014411 rs1778707 T C 449.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.023;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.66;ReadPosRankSum=-1.753;SB=-7.897e+01;SOR=0.160;VQSLOD=7.90;culprit=SOR GT:AD:DP:GQ:PL 0/1:11,16:27:99:478,0,355 1 145016020 rs657162 T G 2351.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;SB=-6.040e+02;SOR=2.649;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2380,175,0 1 145016032 rs5777511 C CA 621.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;RPA=9,10;RU=A;ReadPosRankSum=-0.033;SB=-1.450e+02;SOR=0.516;STR;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:28,28:61:99:659,0,593 1 145017893 rs6702194 G A 250.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.963;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=7.616;HaplotypeScore=4.3503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.57;ReadPosRankSum=-1.338;SB=-8.657e-03;SOR=2.868;VQSLOD=4.78;culprit=QD GT:AD:DP:GQ:PL 0/1:35,10:45:99:279,0,982 1 145018102 . G GAGAA 389.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.88;MQ0=0;MQRankSum=1.542;POSITIVE_TRAIN_SITE;QD=19.49;RPA=1,2;RU=AGAA;ReadPosRankSum=-1.078;SB=-6.100e+01;SOR=0.836;STR;VQSLOD=3.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,8:17:99:427,0,400 1 145020936 rs1778693 A G 82.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.52;ReadPosRankSum=1.534;SB=0.00;SOR=0.260;VQSLOD=7.48;culprit=QD GT:AD:DP:GQ:PL 0/1:10,5:15:99:111,0,277 1 145021024 rs1778692 G C 198.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.902;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.574;SB=-4.100e+01;SOR=0.573;VQSLOD=6.32;culprit=QD GT:AD:DP:GQ:PL 0/1:60,12:72:99:227,0,1911 1 145038736 rs1663882 C G 192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.15;ReadPosRankSum=1.266;SB=-3.100e+01;SOR=1.179;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 0/1:10,9:19:99:221,0,282 1 145038815 rs2442664 A G 1374.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.97;SB=-3.930e+02;SOR=2.147;VQSLOD=5.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1403,111,0 1 145038952 rs1663881 C T 1334.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.754;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=2.627;HaplotypeScore=4.3538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.09;ReadPosRankSum=-0.034;SB=-6.410e+02;SOR=0.911;VQSLOD=6.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,48:103:99:1363,0,1485 1 145039026 rs1663880 T C 703.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.213;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=1.846;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.024;SB=-4.070e+02;SOR=0.415;VQSLOD=7.14;culprit=QD GT:AD:DP:GQ:PL 0/1:60,34:94:99:732,0,1549 1 145039523 rs1663879 G T 403.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.055;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=3.755;HaplotypeScore=2.7236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.69;ReadPosRankSum=-0.091;SB=-9.200e+01;SOR=0.148;VQSLOD=5.76;culprit=QD GT:AD:DP:GQ:PL 0/1:52,19:71:99:432,0,1536 1 145039562 rs1663878 C T 1401.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.553;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=1.888;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.21;ReadPosRankSum=-0.262;SB=-3.650e+02;SOR=0.489;VQSLOD=7.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:71,54:125:99:1430,0,2172 1 145039821 rs7554603 C A 264.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.722;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.451;HaplotypeScore=5.9955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.00;ReadPosRankSum=2.458;SB=-2.657e-01;SOR=1.214;VQSLOD=3.01;culprit=QD GT:AD:DP:GQ:PL 0/1:42,11:53:99:293,0,1263 1 145039831 rs1343582 A G 540.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.099;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.88;ReadPosRankSum=1.577;SB=-1.765e+00;SOR=1.123;VQSLOD=7.92;culprit=FS GT:AD:DP:GQ:PL 0/1:25,17:42:99:569,0,795 1 145039866 rs1445033 A G 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.82;ReadPosRankSum=0.216;SB=-1.765e+00;SOR=1.781;VQSLOD=7.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,9:18:99:295,0,300 1 145074939 rs1663854 T C 1374.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.915;DB;DP=172;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=11.9943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.99;ReadPosRankSum=0.815;SB=-6.310e+02;SOR=0.479;VQSLOD=4.22;culprit=QD GT:AD:DP:GQ:PL 0/1:114,58:172:99:1403,0,3184 1 145075208 rs6424335 T A 338.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.779;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.784;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-0.814;SB=-1.020e+02;SOR=0.219;VQSLOD=7.23;culprit=QD GT:AD:DP:GQ:PL 0/1:23,16:39:99:367,0,732 1 145075234 rs9424815 C T 92.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.011;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.758;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.31;ReadPosRankSum=0.224;SB=-2.701e+01;SOR=0.169;VQSLOD=6.28;culprit=QD GT:AD:DP:GQ:PL 0/1:22,6:28:99:121,0,754 1 145075519 rs2596337 G C 140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.263;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.566;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-0.032;SB=-5.150e-01;SOR=1.312;VQSLOD=4.17;culprit=QD GT:AD:DP:GQ:PL 0/1:19,6:25:99:169,0,565 1 145075683 rs2762779 C T 1067.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.771;HaplotypeScore=3.6199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=0.350;SB=-4.220e+02;SOR=0.817;VQSLOD=7.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,42:108:99:1096,0,1956 1 145075854 rs1663853 G C 2617.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.588;DB;DP=179;Dels=0.00;ExcessHet=3.0103;FS=1.198;HaplotypeScore=2.8316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=0.161;SB=-1.572e+03;SOR=0.573;VQSLOD=7.18;culprit=DP GT:AD:DP:GQ:PL 0/1:76,103:179:99:2646,0,2014 1 145075923 rs6656135 C T 797.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.303;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=2.210;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.32;ReadPosRankSum=0.131;SB=-2.500e+02;SOR=0.368;VQSLOD=6.09;culprit=QD GT:AD:DP:GQ:PL 0/1:75,34:109:99:826,0,2332 1 145103844 rs2590144 G A 1337.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.683;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=4.238;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-1.223;SB=-1.800e+02;SOR=1.176;VQSLOD=4.61;culprit=QD GT:AD:DP:GQ:PL 0/1:99,49:148:99:1366,0,2795 1 145103947 rs2794062 T C 2090.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=13.258;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.483;HaplotypeScore=4.8989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.36;ReadPosRankSum=-1.643;SB=-1.352e+03;SOR=0.760;VQSLOD=2.40;culprit=DP GT:AD:DP:GQ:PL 0/1:162,88:250:99:2119,0,4304 1 145109456 rs7553975 C T 1089.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.975;DB;DP=198;Dels=0.00;ExcessHet=3.0103;FS=0.679;HaplotypeScore=3.4526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.53;ReadPosRankSum=-1.366;SB=-4.350e+02;SOR=0.471;VQSLOD=3.18;culprit=QD GT:AD:DP:GQ:PL 0/1:144,53:198:99:1118,0,4139 1 145109468 rs2442652 A G 6622.77 PASS AC=2;AF=1.00;AN=2;DB;DP=216;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.66;SB=-2.653e+03;SOR=1.805;VQSLOD=3.56;culprit=DP GT:AD:DP:GQ:PL 1/1:0,216:216:99:6651,479,0 1 145109549 rs2596331 G T 1196.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.925;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=3.468;HaplotypeScore=2.7896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-0.307;SB=-5.760e+02;SOR=0.982;VQSLOD=0.857;culprit=QD GT:AD:DP:GQ:PL 0/1:192,58:250:99:1225,0,5737 1 145109583 rs2794053 C A 2879.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.422;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=2.155;HaplotypeScore=6.2831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.52;ReadPosRankSum=1.849;SB=-1.687e+03;SOR=0.554;VQSLOD=4.44;culprit=DP GT:AD:DP:GQ:PL 0/1:142,108:250:99:2908,0,3953 1 145109661 rs2655551 G A 761.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.751;DB;DP=212;Dels=0.00;ExcessHet=3.0103;FS=4.354;HaplotypeScore=6.0575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-0.215;SB=-2.430e+02;SOR=1.107;VQSLOD=0.760;culprit=QD GT:AD:DP:GQ:PL 0/1:171,41:212:99:790,0,4831 1 145109809 rs2596327 T A 282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.88;ReadPosRankSum=-0.291;SB=0.00;SOR=0.350;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 0/1:16,10:26:99:311,0,532 1 145112285 rs139568698 C T 132.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.409;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.74;ReadPosRankSum=1.093;SB=-1.765e+00;SOR=0.340;VQSLOD=7.73;culprit=QD GT:AD:DP:GQ:PL 0/1:22,6:28:99:161,0,748 1 145112287 rs2794042 T C 333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.696;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.77;ReadPosRankSum=2.623;SB=-1.765e+00;SOR=0.892;VQSLOD=7.44;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:20,11:31:99:362,0,608 1 145112288 rs151321719 G A 120.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.90;ReadPosRankSum=1.576;SB=-1.765e+00;SOR=0.273;VQSLOD=7.08;culprit=QD GT:AD:DP:GQ:PL 0/1:25,6:31:99:149,0,855 1 145112313 rs2596302 T C 161.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.817;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.368;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.17;ReadPosRankSum=0.350;SB=-1.352e-01;SOR=1.071;VQSLOD=3.05;culprit=QD GT:AD:DP:GQ:PL 0/1:43,8:51:99:190,0,1371 1 145112414 rs2590131 T C 399.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;DB;DP=168;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=25.9858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.38;ReadPosRankSum=-0.617;SB=-1.600e+02;SOR=0.663;VQSLOD=3.02;culprit=QD GT:AD:DP:GQ:PL 0/1:143,25:168:99:428,0,3720 1 145112420 rs2794041 C T 848.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;DB;DP=172;Dels=0.00;ExcessHet=3.0103;FS=2.212;HaplotypeScore=50.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.93;ReadPosRankSum=1.227;SB=-5.720e+02;SOR=0.514;VQSLOD=3.19;culprit=QD GT:AD:DP:GQ:PL 0/1:128,44:172:99:877,0,3331 1 145112428 rs2794040 C T 394.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740;DB;DP=180;Dels=0.00;ExcessHet=3.0103;FS=0.764;HaplotypeScore=28.9063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.541;SB=-2.580e+02;SOR=0.597;VQSLOD=1.79;culprit=QD GT:AD:DP:GQ:PL 0/1:152,28:180:99:423,0,3975 1 145112485 rs2794039 C T 384.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.613;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.764;SB=-2.460e+02;SOR=0.620;VQSLOD=2.66;culprit=QD GT:AD:DP:GQ:PL 0/1:137,26:163:99:413,0,3528 1 145115556 rs7545073 A C 63.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQ0=0;MQRankSum=1.036;QD=6.38;ReadPosRankSum=-0.210;SB=0.00;SOR=0.223;VQSLOD=1.20;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:92:92,0,228 1 145115602 rs7540746 C T 198.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.762;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQ0=0;MQRankSum=1.734;QD=6.63;ReadPosRankSum=0.892;SB=0.00;SOR=0.142;VQSLOD=1.69;culprit=QD GT:AD:DP:GQ:PL 0/1:22,8:30:99:227,0,793 1 145115810 rs2655557 A G 2357.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;DB;DP=215;Dels=0.00;ExcessHet=3.0103;FS=2.336;HaplotypeScore=30.4579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.97;ReadPosRankSum=0.234;SB=-1.559e+03;SOR=0.555;VQSLOD=5.14;culprit=DP GT:AD:DP:GQ:PL 0/1:112,103:215:99:2386,0,3050 1 145116027 rs7550440 T C 129.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.81;ReadPosRankSum=0.235;SB=0.00;SOR=0.446;VQSLOD=7.94;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:158,0,236 1 145209417 . C T 99.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.673;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=52.48;MQ0=2;MQRankSum=0.744;QD=2.56;ReadPosRankSum=-1.883;SB=-6.200e+01;SOR=0.796;VQSLOD=1.21;culprit=QD GT:AD:DP:GQ:PL 0/1:32,7:39:99:128,0,791 1 145209612 . GCCCCGCCAACCGCCGGGGTT G 2631.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;DP=51;ExcessHet=3.0103;FS=6.778;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=2.144;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.97;RPA=3,2;RU=CCCCGCCAACCGCCGGGGTT;ReadPosRankSum=0.145;SB=-7.180e+02;SOR=0.122;STR;VQSLOD=0.251;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,15:50:99:2669,0,3882 1 145277430 rs77938685 T C 287.78 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=3;QD=17.99;SB=-1.573e+02;SOR=1.179;VQSLOD=2.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:24:316,24,0 1 145277457 rs78018144 A G 295.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=1;QD=22.75;SB=-1.085e+02;SOR=1.445;VQSLOD=2.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:24:324,24,0 1 145277469 rs74494878 G A 288.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=1;QD=24.07;SB=-7.097e+01;SOR=1.802;VQSLOD=4.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:24:317,24,0 1 145277481 rs76267341 A G 287.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=28.78;SB=-3.876e+01;SOR=2.303;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:316,24,0 1 145282093 rs199946317 G A 262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=0;MQRankSum=-2.538;QD=5.05;ReadPosRankSum=-1.456;SB=-4.900e+01;SOR=0.556;VQSLOD=1.62;culprit=QD GT:AD:DP:GQ:PL 0/1:40,12:52:99:291,0,1278 1 145290317 rs77985488 C T 71.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.176;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9985;MLEAC=1;MLEAF=0.500;MQ=58.22;MQ0=0;MQRankSum=-2.838;QD=3.59;ReadPosRankSum=-0.426;SB=0.00;SOR=0.083;VQSLOD=1.82;culprit=QD GT:AD:DP:GQ:PL 0/1:16,4:20:99:100,0,566 1 145290320 rs2949607 C T 185.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.298;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9985;MLEAC=1;MLEAF=0.500;MQ=58.31;MQ0=0;MQRankSum=-2.992;QD=8.85;ReadPosRankSum=-0.299;SB=0.00;SOR=0.250;VQSLOD=1.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,7:21:99:214,0,506 1 145290346 . A G 559.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.614;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9990;MLEAC=1;MLEAF=0.500;MQ=57.54;MQ0=0;MQRankSum=-2.248;QD=20.73;ReadPosRankSum=0.402;SB=-3.301e+01;SOR=1.358;VQSLOD=2.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,17:27:99:588,0,280 1 145290351 . A G 98.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.975;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9655;MLEAC=1;MLEAF=0.500;MQ=57.65;MQ0=0;MQRankSum=-1.532;QD=3.29;ReadPosRankSum=-0.104;SB=-1.765e+00;SOR=0.142;VQSLOD=2.01;culprit=QD GT:AD:DP:GQ:PL 0/1:24,6:30:99:127,0,789 1 145290535 rs76602996 C T 128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.08;MQ0=0;MQRankSum=-5.961;QD=2.99;ReadPosRankSum=-0.866;SB=-7.500e+01;SOR=0.569;VQSLOD=0.187;culprit=QD GT:AD:DP:GQ:PL 0/1:34,9:43:99:157,0,988 1 145293274 rs4525095 T G 103.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.845;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=44.19;MQ0=0;MQRankSum=-1.437;QD=4.72;ReadPosRankSum=0.627;SB=-5.100e+01;SOR=0.892;VQSLOD=1.98;culprit=QD GT:AD:DP:GQ:PL 0/1:17,5:22:99:132,0,516 1 145296207 rs71246524 T C 55.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.57;MQ0=0;MQRankSum=-3.451;QD=3.10;ReadPosRankSum=0.099;SB=0.00;SOR=0.169;VQSLOD=1.66;culprit=QD GT:AD:DP:GQ:PL 0/1:13,5:18:84:84,0,463 1 145297890 rs4068089 G A 92.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=54.99;MQ0=0;MQRankSum=-4.146;QD=4.42;ReadPosRankSum=-1.948;SB=-1.765e+00;SOR=0.627;VQSLOD=0.900;culprit=QD GT:AD:DP:GQ:PL 0/1:15,6:21:99:121,0,479 1 145304180 rs76221302 G T 256.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.20;MQ0=0;MQRankSum=-0.749;QD=10.27;ReadPosRankSum=0.960;SB=-3.500e+01;SOR=0.481;VQSLOD=2.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,11:25:99:285,0,394 1 145304787 . G T 260.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.237;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8650;MLEAC=1;MLEAF=0.500;MQ=50.72;MQ0=2;MQRankSum=-5.177;QD=6.06;ReadPosRankSum=0.057;SB=-4.700e+01;SOR=0.404;VQSLOD=0.886;culprit=QD GT:AD:DP:GQ:PL 0/1:29,14:43:99:289,0,905 1 145310283 . G A 123.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9967;MLEAC=1;MLEAF=0.500;MQ=53.05;MQ0=0;MQRankSum=-1.033;QD=3.75;ReadPosRankSum=-0.132;SB=-5.300e+01;SOR=0.495;VQSLOD=2.01;culprit=QD GT:AD:DP:GQ:PL 0/1:26,7:33:99:152,0,799 1 145365316 rs368121891 G A 1401.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=30.47;SB=-5.580e+02;SOR=1.609;VQSLOD=5.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1430,108,0 1 145365372 rs4126496 C G 1767.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=29.96;SB=-1.095e+03;SOR=0.796;VQSLOD=5.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1796,129,0 1 145367094 rs3010128 C T 70.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.75;MQ0=2;MQRankSum=1.376;QD=5.44;ReadPosRankSum=-0.175;SB=-6.900e+01;SOR=0.180;VQSLOD=1.78;culprit=QD GT:AD:DP:GQ:PL 0/1:6,7:13:57:99,0,57 1 145368837 rs7414890 C A 290.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.20;MQ0=0;MQRankSum=1.531;QD=22.37;ReadPosRankSum=-0.446;SB=0.00;SOR=1.609;VQSLOD=2.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,9:13:99:319,0,125 1 145459967 rs371405544 C T 342.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.188;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.58;ReadPosRankSum=0.212;SB=-2.120e+02;SOR=0.836;VQSLOD=8.76;culprit=FS GT:AD:DP:GQ:PL 0/1:7,15:22:99:371,0,193 1 145515394 rs61746197 A G 1822.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.757;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=6.258;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.32;ReadPosRankSum=-1.653;SB=-5.460e+02;SOR=1.338;VQSLOD=4.10;culprit=FS GT:AD:DP:GQ:PL 0/1:55,64:119:99:1851,0,1421 1 145517063 rs10910821 G A 1311.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.64;SB=-1.921e+02;SOR=3.556;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1340,102,0 1 145531980 rs4384171 T C 1508.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-7.720e+02;SOR=0.919;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1537,114,0 1 145532549 rs1328584 T C 5213.77 PASS AC=2;AF=1.00;AN=2;DB;DP=166;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-3.055e+03;SOR=0.889;VQSLOD=7.00;culprit=DP GT:AD:DP:GQ:PL 1/1:0,165:166:99:5242,373,0 1 145532994 rs34834904 GT G 186.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;RPA=8,7;RU=T;ReadPosRankSum=-0.463;SB=-9.900e+01;SOR=0.653;STR;VQSLOD=10.02;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:224,0,164 1 145533001 rs35103913 T C 158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=-0.567;SB=-1.460e+02;SOR=0.653;VQSLOD=10.00;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:187,0,211 1 145533175 rs11590105 T C 371.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.466;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.565;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=0.115;SB=-2.410e+02;SOR=0.188;VQSLOD=10.44;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,14:28:99:400,0,346 1 145533314 rs2274619 T C 442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.810;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=1.314;SB=-1.460e+02;SOR=0.671;VQSLOD=9.92;culprit=FS GT:AD:DP:GQ:PL 0/1:11,14:25:99:471,0,253 1 145535611 rs4970851 T G 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.952;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=7.273;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=-0.074;SB=-1.470e+02;SOR=0.097;VQSLOD=8.63;culprit=FS GT:AD:DP:GQ:PL 0/1:16,11:27:99:295,0,436 1 145535921 rs2274617 T C 2276.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.314;DB;DP=168;Dels=0.00;ExcessHet=3.0103;FS=16.710;HaplotypeScore=2.6777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=-1.161;SB=-1.010e+03;SOR=1.225;VQSLOD=3.45;culprit=FS GT:AD:DP:GQ:PL 0/1:85,83:168:99:2305,0,2312 1 145538664 rs1109216 A G 1325.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.582;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=1.756;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=1.384;SB=-6.720e+02;SOR=0.469;VQSLOD=9.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,51:96:99:1354,0,1128 1 145542273 rs142018351 C T 467.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.508;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.35;ReadPosRankSum=0.821;SB=-2.070e+02;SOR=0.640;VQSLOD=8.72;culprit=QD GT:AD:DP:GQ:PL 0/1:35,21:56:99:496,0,957 1 145555653 rs6424379 C T 1082.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.253;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=-0.496;SB=-4.570e+02;SOR=0.648;VQSLOD=8.16;culprit=QD GT:AD:DP:GQ:PL 0/1:81,44:125:99:1111,0,2284 1 145558565 rs11801520 C G 1706.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.83;SB=-2.381e+02;SOR=3.702;VQSLOD=5.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1735,129,0 1 145561594 rs6670984 C T 3119.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-11.945;DB;DP=224;Dels=0.00;ExcessHet=3.0103;FS=1.726;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=1.854;SB=-1.074e+03;SOR=0.859;VQSLOD=6.36;culprit=DP GT:AD:DP:GQ:PL 0/1:115,109:224:99:3148,0,3162 1 145562087 rs41315701 G A 1205.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.835;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=-0.279;SB=-5.620e+02;SOR=0.829;VQSLOD=7.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,42:81:99:1234,0,1113 1 145562293 rs11579366 G C 1465.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.338;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=2.348;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=0.099;SB=-7.270e+02;SOR=0.923;VQSLOD=7.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:68,51:119:99:1494,0,1908 1 145562881 rs10910824 T C 685.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.662;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=11.146;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.53;ReadPosRankSum=0.552;SB=-1.260e+02;SOR=2.636;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 0/1:16,21:37:99:714,0,469 1 145566535 rs1819347 C T 702.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.659;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.544;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=-0.128;SB=-8.900e+01;SOR=1.247;VQSLOD=7.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,23:47:99:731,0,641 1 145585317 rs4128488 A G 2189.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.81;SB=-1.215e+03;SOR=1.121;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2218,169,0 1 145586403 rs1050057 G T 445.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.32;SB=0.00;SOR=5.136;VQSLOD=8.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:13:36:474,36,0 1 145586839 rs16827062 C T 2352.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.890;DB;DP=190;Dels=0.00;ExcessHet=3.0103;FS=0.532;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-1.278;SB=-1.179e+03;SOR=0.748;VQSLOD=6.91;culprit=DP GT:AD:DP:GQ:PL 0/1:98,92:190:99:2381,0,2801 1 145588184 rs2004659 T C 269.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.654;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.3990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=-0.654;SB=-1.060e+02;SOR=1.038;VQSLOD=10.42;culprit=FS GT:AD:DP:GQ:PL 0/1:6,11:17:99:298,0,123 1 145588536 rs9286836 C T 844.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=8.862;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=-0.746;SB=-2.590e+02;SOR=1.652;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 0/1:36,29:65:99:873,0,1008 1 145589491 rs1887804 A T 759.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.979;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8442;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.66;ReadPosRankSum=-1.084;SB=-6.297e+01;SOR=3.989;VQSLOD=4.01;culprit=FS GT:AD:DP:GQ:PL 1/1:1,23:25:60:788,60,0 1 145594799 rs1887806 C T 144.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.359;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-0.619;SB=-9.500e+01;SOR=0.307;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:173,0,141 1 145597116 rs9728311 C T 1854.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;SB=-9.290e+02;SOR=1.123;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1883,144,0 1 145598459 rs9729715 T C 1976.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.68;SB=-1.122e+03;SOR=0.728;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:2005,147,0 1 145601861 rs9286837 G A 3032.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9572;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-7.680e+02;SOR=2.511;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:3061,229,0 1 145686905 . G T 241.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.050;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.09;ReadPosRankSum=0.076;SB=-7.697e+01;SOR=0.072;VQSLOD=7.63;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,10:20:99:270,0,354 1 145696694 rs2231375 G A 233.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=0.835;SB=-6.300e+01;SOR=0.368;VQSLOD=10.19;culprit=FS GT:AD:DP:GQ:PL 0/1:13,9:22:99:262,0,352 1 145706564 rs372969949 C CA 230.25 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.353;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.000;QD=12.79;RPA=20,21;RU=A;ReadPosRankSum=-1.364;SB=-1.078e+02;SOR=0.914;STR;VQSLOD=8.31;culprit=FS GT:AD:DP:GQ:PL 1/1:3,15:21:9:267,9,0 1 145826770 rs34955113 G A 1751.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.05;SB=-6.210e+02;SOR=1.791;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1780,141,0 1 145931852 rs202245677 A C 1258.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.15;MQ0=1;QD=23.31;SB=-9.180e+02;SOR=0.892;VQSLOD=3.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:93:1287,93,0 1 146465784 rs139773774 C G 512.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.23;MQ0=1;QD=30.16;SB=-4.276e+01;SOR=4.174;VQSLOD=5.31;culprit=FS GT:AD:DP:GQ:PL 1/1:1,16:17:42:541,42,0 1 146496661 rs55985558 G A 201.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.341;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=5.082;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.96;ReadPosRankSum=0.495;SB=-3.577e+01;SOR=0.045;VQSLOD=8.52;culprit=QD GT:AD:DP:GQ:PL 0/1:20,9:29:99:230,0,709 1 146502533 rs4950331 C T 668.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=-3.060e+02;SOR=1.230;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:51:697,51,0 1 146576113 rs6593734 G A 143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.204;SB=-3.377e+01;SOR=0.307;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:172,0,131 1 146576120 rs4950369 G C 347.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-8.497e+01;SOR=2.494;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:376,27,0 1 146576122 rs4950370 T C 347.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-8.097e+01;SOR=2.494;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:376,27,0 1 146576133 rs6593735 C G 396.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-1.235e+02;SOR=2.147;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:425,30,0 1 146576167 rs6593736 C T 195.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.144;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=6.368;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=-0.490;SB=-1.603e+02;SOR=0.053;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 0/1:5,10:15:99:224,0,170 1 146586727 rs148953540 G A 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=6.368;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.15;MQ0=0;MQRankSum=0.306;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-0.422;SB=-1.085e+02;SOR=0.061;VQSLOD=0.087;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,8:13:99:201,0,172 1 146602026 rs72706447 A G 316.90 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=-0.397;SB=-2.231e+02;SOR=0.976;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:2,14:16:15:345,0,15 1 146633059 rs56053798 C T 265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.101;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-1.330;SB=0.00;SOR=0.804;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:8,9:17:99:294,0,273 1 146633933 rs1036852 G A 990.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-3.030e+02;SOR=2.235;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:75:1019,75,0 1 146639588 rs55797044 A G 417.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.737;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.773;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=1.591;SB=-6.200e+01;SOR=1.230;VQSLOD=7.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,15:33:99:446,0,484 1 146643495 rs72708505 C A 126.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.091;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.37;ReadPosRankSum=0.994;SB=-3.800e+01;SOR=1.551;VQSLOD=4.72;culprit=QD GT:AD:DP:GQ:PL 0/1:22,7:29:99:155,0,509 1 146643555 rs1348316 A G 832.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.74;SB=-3.620e+02;SOR=1.382;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:63:861,63,0 1 146643580 rs34838459 G A 75.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.280;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.114;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.16;ReadPosRankSum=-1.530;SB=-1.227e+01;SOR=1.508;VQSLOD=4.31;culprit=QD GT:AD:DP:GQ:PL 0/1:19,5:24:99:104,0,525 1 146649777 rs112196423 G A 2102.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.722;DB;DP=167;Dels=0.00;ExcessHet=3.0103;FS=0.582;HaplotypeScore=4.7250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-1.044;SB=-9.840e+02;SOR=0.792;VQSLOD=7.77;culprit=DP GT:AD:DP:GQ:PL 0/1:92,75:167:99:2131,0,2619 1 146650007 rs72708526 G A 1278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.787;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.764;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=-1.002;SB=-5.730e+02;SOR=0.521;VQSLOD=9.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,50:101:99:1307,0,1602 1 146650058 rs1816802 T C 1297.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=1.580;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=0.317;SB=-7.480e+02;SOR=0.606;VQSLOD=8.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,49:103:99:1326,0,1509 1 146650312 rs72708527 G A 1433.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=4.773;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=-0.301;SB=-9.040e+02;SOR=0.445;VQSLOD=8.58;culprit=FS GT:AD:DP:GQ:PL 0/1:49,57:106:99:1462,0,1331 1 146650363 rs17159909 T A 1458.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.033;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.779;HaplotypeScore=1.8279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=-0.086;SB=-7.260e+02;SOR=0.872;VQSLOD=7.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,53:95:99:1487,0,1134 1 146650542 rs62623395 A G 2163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.403;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=1.477;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.45;MQ0=2;MQRankSum=-2.786;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=-1.265;SB=-9.330e+02;SOR=0.885;VQSLOD=0.029;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,71:125:99:2192,0,1380 1 146656040 rs72708553 T C 541.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.113;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.127;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=-0.573;SB=-1.070e+02;SOR=0.278;VQSLOD=9.73;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,19:34:99:570,0,438 1 146656097 rs72708554 C T 753.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.994;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=0.182;SB=-3.290e+02;SOR=0.648;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 0/1:34,30:64:99:782,0,857 1 146656292 rs4950385 A G 791.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.074;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=5.428;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=0.399;SB=-4.300e+02;SOR=0.276;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:30,33:63:99:820,0,853 1 146658993 rs72708556 C G 257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.83;ReadPosRankSum=-0.281;SB=0.00;SOR=1.179;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:286,0,166 1 146672906 rs894469 C T 2028.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.007;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=3.109;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=1.189;SB=-1.197e+03;SOR=0.445;VQSLOD=8.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,75:137:99:2057,0,1544 1 146673178 rs6683215 A G 1435.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-1.155e+02;SOR=4.514;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1464,108,0 1 146675284 rs10900324 C T 68.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.73;ReadPosRankSum=0.817;SB=-2.901e+01;SOR=1.022;VQSLOD=8.52;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:97:97,0,183 1 146680262 rs2354433 A G 685.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.313;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.33;ReadPosRankSum=0.567;SB=-7.301e+01;SOR=1.230;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:20,22:42:99:714,0,565 1 146680334 rs6674643 G A 971.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.076;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=2.904;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-0.198;SB=-4.220e+02;SOR=1.148;VQSLOD=7.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,41:89:99:1000,0,1177 1 146680394 rs6684454 C T 1128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.230;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=2.585;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-0.272;SB=-6.260e+02;SOR=0.684;VQSLOD=7.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,47:103:99:1157,0,1428 1 146683673 rs28381190 C T 231.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.688;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.000;SB=-9.732e-01;SOR=2.517;VQSLOD=5.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,8:17:99:260,0,246 1 146683873 rs17360059 C T 889.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.612;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.031;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-0.387;SB=-3.520e+02;SOR=0.997;VQSLOD=7.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,32:68:99:918,0,924 1 146683888 rs28381188 G A 919.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.335;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.888;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.167;SB=-3.750e+02;SOR=0.886;VQSLOD=7.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,34:76:99:948,0,1070 1 146684131 rs2297753 G A 885.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.137;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.37;ReadPosRankSum=0.663;SB=-2.410e+02;SOR=0.709;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:19,32:51:99:914,0,491 1 146684173 rs17360066 T G 230.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.183;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.793;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=0.000;SB=-5.150e-01;SOR=2.030;VQSLOD=5.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,8:24:99:259,0,453 1 146685121 rs1530336 G A 641.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.628;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=1.312;SB=-3.530e+02;SOR=0.679;VQSLOD=8.78;culprit=FS GT:AD:DP:GQ:PL 0/1:37,27:64:99:670,0,889 1 146685188 rs28381183 G T 617.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.859;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.835;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=1.383;SB=-2.370e+02;SOR=1.220;VQSLOD=6.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,23:40:99:646,0,368 1 146687250 rs1822312 A T 859.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.29;SB=0.00;SOR=6.358;VQSLOD=8.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:888,69,0 1 146696435 rs17356031 A G 479.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.440;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.45;ReadPosRankSum=1.689;SB=0.00;SOR=1.220;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 0/1:10,16:26:99:508,0,316 1 146714392 rs1890042 G C 55.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.72;ReadPosRankSum=2.598;SB=-2.203e+01;SOR=0.818;VQSLOD=7.55;culprit=QD GT:AD:DP:GQ:PL 0/1:12,3:15:84:84,0,322 1 146714427 rs11588753 G C 420.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.486;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.75;ReadPosRankSum=0.126;SB=-2.520e+02;SOR=0.368;VQSLOD=8.27;culprit=FS GT:AD:DP:GQ:PL 0/1:3,14:17:70:449,0,70 1 146723941 rs1890038 C T 1896.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.557;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.806;SB=-1.169e+03;SOR=0.683;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:55,77:132:99:1925,0,1297 1 146724003 rs3820130 A G 1333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.417;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=-0.216;SB=-5.870e+02;SOR=0.757;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 0/1:72,50:122:99:1362,0,1930 1 146724093 rs1890037 A G 2143.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.03;SB=-8.540e+02;SOR=1.573;VQSLOD=5.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2172,157,0 1 146724408 rs3737845 G A 799.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.243;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=5.324;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=1.255;SB=-9.300e+01;SOR=1.675;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 0/1:26,27:53:99:828,0,711 1 146727593 rs3737846 G A 966.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.865;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.033;SB=-4.340e+02;SOR=0.708;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:35,38:73:99:995,0,1000 1 146728162 . T TA 1017.73 PASS AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.18;RPA=1,2;RU=A;SB=-3.650e+02;SOR=1.519;STR;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:72:1055,72,0 1 146737490 rs3737848 G C 578.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.408;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=6.410;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.54;ReadPosRankSum=0.248;SB=-9.732e-01;SOR=2.617;VQSLOD=5.74;culprit=FS GT:AD:DP:GQ:PL 0/1:17,18:35:99:607,0,456 1 146739277 rs4143738 T C 495.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.545;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=7.444;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.380;SB=-2.302e+01;SOR=2.546;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 0/1:18,16:34:99:524,0,458 1 146740576 rs11576360 G A 1838.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.516;DB;DP=172;Dels=0.00;ExcessHet=3.0103;FS=2.855;HaplotypeScore=1.9328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=-0.700;SB=-7.300e+02;SOR=0.953;VQSLOD=7.16;culprit=DP GT:AD:DP:GQ:PL 0/1:94,78:172:99:1867,0,2459 1 146747153 rs6680778 T C 1365.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.213;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=1.813;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-0.033;SB=-5.700e+02;SOR=0.460;VQSLOD=9.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,54:104:99:1394,0,1303 1 146747232 rs6672850 C T 466.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.189;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=0.065;SB=0.00;SOR=0.760;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:14,15:29:99:495,0,413 1 146748008 rs3831929 CAGCCA C 523.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.102;DB;DP=18;ExcessHet=3.0103;FS=3.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=0.782;SB=-9.732e-01;SOR=2.093;VQSLOD=5.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,7:18:99:561,0,814 1 146751782 rs7547279 A C 3617.77 PASS AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-1.970e+03;SOR=0.984;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,115:115:99:3646,265,0 1 146756222 rs146052781 AAAAC A 683.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;DB;DP=33;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.09;RPA=3,2;RU=AAAC;ReadPosRankSum=1.165;SB=-1.520e+02;SOR=1.179;STR;VQSLOD=6.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,14:33:99:721,0,869 1 146757923 rs9661159 G A 1162.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.879;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=1.780;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-0.495;SB=-5.340e+02;SOR=0.463;VQSLOD=9.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,46:98:99:1191,0,1557 1 146759320 rs2275249 C G 428.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.055;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=7.420;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=0.660;SB=-1.880e+02;SOR=1.219;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 0/1:18,17:35:99:457,0,543 1 146763089 rs10900333 G A 3577.77 PASS AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.0613;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=-1.697e+03;SOR=1.282;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,113:113:99:3606,268,0 1 146763415 rs3737854 T C 784.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=-7.097e+01;SOR=4.091;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:813,66,0 1 146763438 rs10793659 A G 570.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.21;SB=0.00;SOR=5.549;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:599,45,0 1 146765454 rs2297752 C G 715.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.589;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.84;ReadPosRankSum=0.045;SB=-1.290e+02;SOR=1.085;VQSLOD=6.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,24:38:99:744,0,354 1 146766069 rs67589628 C CAT 7437.73 PASS AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.18;SB=-1.891e+03;SOR=2.394;VQSLOD=4.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,131:132:99:7475,394,0 1 146767149 rs4950394 G T 693.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=-3.880e+02;SOR=0.874;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:54:722,54,0 1 147083744 rs677977 C T 507.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.084;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=0.277;SB=-2.280e+02;SOR=0.569;VQSLOD=10.04;culprit=FS GT:AD:DP:GQ:PL 0/1:22,20:42:99:536,0,669 1 147087721 rs3737843 T A 539.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-1.693;SB=-2.260e+02;SOR=0.804;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:24,23:47:99:568,0,597 1 147096794 rs867270 A G 564.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.361;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=1.062;HaplotypeScore=3.6281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.43;ReadPosRankSum=0.892;SB=-2.380e+02;SOR=0.531;VQSLOD=9.13;culprit=QD GT:AD:DP:GQ:PL 0/1:44,23:67:99:593,0,1190 1 147096828 rs946902 C G 1250.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-3.810e+02;SOR=2.191;VQSLOD=4.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:93:1279,93,0 1 147121977 rs6593795 C T 3318.77 PASS AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-1.692e+03;SOR=1.230;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,113:113:99:3347,247,0 1 147124310 rs2153463 T G 1316.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.753;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=1.684;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=1.248;SB=-7.270e+02;SOR=0.518;VQSLOD=9.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,52:97:99:1345,0,1214 1 147124556 rs372824445 GA G 70.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.959;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.16;RPA=15,14;RU=A;ReadPosRankSum=-0.293;SB=0.00;SOR=0.425;STR;VQSLOD=7.88;culprit=QD GT:AD:DP:GQ:PL 0/1:10,7:20:99:108,0,206 1 147131322 rs11240096 G T 933.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=-3.190e+02;SOR=1.781;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:72:962,72,0 1 147131323 rs11240097 A T 884.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.77;SB=-3.000e+02;SOR=1.781;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:69:913,69,0 1 147131465 rs6674938 T C 3069.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;SB=-1.311e+03;SOR=1.464;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:3098,223,0 1 147131710 rs3818888 A C 2620.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=-1.432e+03;SOR=0.914;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2649,193,0 1 147131945 rs2275552 T C 1106.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.88;SB=-8.197e+01;SOR=4.548;VQSLOD=4.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:84:1135,84,0 1 147142296 rs2883202 T C 1391.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.79;SB=-2.391e+02;SOR=3.258;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1420,102,0 1 147230217 rs1692141 T C 2451.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.69;SB=-7.410e+02;SOR=2.334;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2480,184,0 1 147231531 rs1692140 T C 465.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=0.00;SOR=5.136;VQSLOD=8.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:494,36,0 1 147381444 rs1532399 A C 411.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.113;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQ0=0;MQRankSum=1.514;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=-1.672;SB=-9.400e+01;SOR=0.527;VQSLOD=3.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,16:40:99:440,0,615 1 147706526 rs142484702 T C 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=-1.228;QD=19.12;ReadPosRankSum=-0.184;SB=-3.876e+01;SOR=0.527;VQSLOD=2.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,10:15:99:315,0,150 1 147706592 rs139101841 A C 450.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4558;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=-1.323;QD=15.03;ReadPosRankSum=-0.538;SB=-2.460e+02;SOR=1.078;VQSLOD=2.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,19:30:99:479,0,199 1 147806559 rs10752439 C T 371.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.547;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.892;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=-0.372;SB=-1.390e+02;SOR=0.207;VQSLOD=9.60;culprit=SOR GT:AD:DP:GQ:PL 0/1:22,15:37:99:400,0,725 1 147806874 rs2999607 G C 369.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.669;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=0.359;SB=-1.765e+00;SOR=1.730;VQSLOD=8.58;culprit=FS GT:AD:DP:GQ:PL 0/1:13,13:26:99:398,0,414 1 147806880 rs537191 T C 905.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.05;SB=0.00;SOR=6.518;VQSLOD=7.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:72:934,72,0 1 148004475 rs367648584 C G 296.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.893;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.5829;MLEAC=1;MLEAF=0.500;MQ=42.05;MQ0=7;MQRankSum=-5.134;QD=5.71;ReadPosRankSum=-1.657;SB=-4.500e+01;SOR=0.794;VQSLOD=0.458;culprit=QD GT:AD:DP:GQ:PL 0/1:27,25:52:99:325,0,722 1 148009510 rs1127394 G A 1016.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.416;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.54;ReadPosRankSum=0.877;SB=-2.730e+02;SOR=0.689;VQSLOD=6.98;culprit=QD GT:AD:DP:GQ:PL 0/1:76,43:119:99:1045,0,2190 1 148017705 rs201074049 C A 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.306;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.42;MQ0=3;MQRankSum=-4.259;QD=8.23;ReadPosRankSum=0.432;SB=-1.807e+01;SOR=0.693;VQSLOD=1.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,10:21:99:201,0,269 1 148017714 rs377462876 T A 175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.28;MQ0=1;MQRankSum=-4.101;QD=9.76;ReadPosRankSum=0.564;SB=-1.807e+01;SOR=0.818;VQSLOD=1.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,10:18:99:204,0,222 1 148024964 rs61810799 A G 369.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8910;MLEAC=1;MLEAF=0.500;MQ=40.27;MQ0=7;MQRankSum=-4.961;QD=8.60;ReadPosRankSum=0.579;SB=-1.860e+02;SOR=0.782;VQSLOD=0.688;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,28:43:99:398,0,415 1 148193637 . C A 257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.354;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.86;ReadPosRankSum=-0.978;SB=-1.610e+02;SOR=0.646;VQSLOD=7.58;culprit=QD GT:AD:DP:GQ:PL 0/1:31,13:44:99:286,0,771 1 148252243 . T TA 85.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.420;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.14;MQ0=0;MQRankSum=-3.646;QD=4.08;RPA=10,11;RU=A;ReadPosRankSum=0.747;SB=0.00;SOR=0.250;STR;VQSLOD=0.163;culprit=QD GT:AD:DP:GQ:PL 0/1:14,7:22:99:123,0,290 1 148252264 . A T 65.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.0508;MLEAC=1;MLEAF=0.500;MQ=48.60;MQ0=0;MQRankSum=-4.350;QD=2.86;ReadPosRankSum=0.915;SB=0.00;SOR=0.368;VQSLOD=1.27;culprit=QD GT:AD:DP:GQ:PL 0/1:14,9:23:94:94,0,444 1 148344521 rs1880501 C T 161.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.037;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=41.76;MQ0=4;MQRankSum=1.541;QD=2.79;ReadPosRankSum=-0.601;SB=-1.514e+01;SOR=0.746;VQSLOD=1.19;culprit=QD GT:AD:DP:GQ:PL 0/1:48,10:58:99:190,0,1266 1 148853801 rs148046717 A G 163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.263;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9943;MLEAC=1;MLEAF=0.500;MQ=43.77;MQ0=0;MQRankSum=-0.818;QD=11.70;ReadPosRankSum=-0.438;SB=-6.700e+01;SOR=1.085;VQSLOD=2.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,8:14:99:192,0,127 1 148853852 . C A 70.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.262;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9702;MLEAC=1;MLEAF=0.500;MQ=46.11;MQ0=0;MQRankSum=-1.966;QD=2.72;ReadPosRankSum=-1.492;SB=-4.000e+01;SOR=0.846;VQSLOD=1.70;culprit=QD GT:AD:DP:GQ:PL 0/1:20,6:26:99:99,0,575 1 148853872 . G A 84.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.9866;MLEAC=1;MLEAF=0.500;MQ=45.35;MQ0=0;MQRankSum=-1.194;QD=2.92;ReadPosRankSum=-0.728;SB=-3.400e+01;SOR=0.999;VQSLOD=1.71;culprit=QD GT:AD:DP:GQ:PL 0/1:23,6:29:99:113,0,630 1 148853876 . C T 89.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9882;MLEAC=1;MLEAF=0.500;MQ=45.35;MQ0=0;MQRankSum=-1.194;QD=3.10;ReadPosRankSum=-0.727;SB=-3.300e+01;SOR=0.999;VQSLOD=1.69;culprit=QD GT:AD:DP:GQ:PL 0/1:23,6:29:99:118,0,618 1 148853879 . G A 86.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9214;MLEAC=1;MLEAF=0.500;MQ=45.75;MQ0=0;MQRankSum=-1.134;QD=3.21;ReadPosRankSum=-0.250;SB=-3.700e+01;SOR=0.646;VQSLOD=1.44;culprit=QD GT:AD:DP:GQ:PL 0/1:22,5:27:99:115,0,574 1 148853952 . C T 78.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.665;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9324;MLEAC=1;MLEAF=0.500;MQ=44.09;MQ0=0;MQRankSum=-2.086;QD=2.81;ReadPosRankSum=0.584;SB=-7.500e+01;SOR=0.655;VQSLOD=1.88;culprit=QD GT:AD:DP:GQ:PL 0/1:21,7:28:99:107,0,545 1 148853997 . C G 40.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.294;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=40.55;MQ0=0;MQRankSum=-0.805;QD=2.26;ReadPosRankSum=0.053;SB=-2.501e+01;SOR=0.368;VQSLOD=2.01;culprit=QD GT:AD:DP:GQ:PL 0/1:14,4:18:69:69,0,396 1 148854033 . T C 44.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=43.29;MQ0=0;MQRankSum=-1.922;QD=4.07;ReadPosRankSum=0.577;SB=-1.765e+00;SOR=0.693;VQSLOD=1.88;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:73:73,0,242 1 148889699 rs10157381 A G 543.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.056;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=54.83;MQ0=0;MQRankSum=0.641;QD=11.57;ReadPosRankSum=-0.203;SB=-1.430e+02;SOR=0.557;VQSLOD=1.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,22:47:99:572,0,710 1 148891643 rs200975583 A G 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.182;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.83;MQ0=2;MQRankSum=-4.673;QD=4.81;ReadPosRankSum=-1.376;SB=-9.800e+01;SOR=0.926;VQSLOD=0.505;culprit=QD GT:AD:DP:GQ:PL 0/1:35,25:60:99:317,0,926 1 149037624 rs7533720 T C 517.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.36;SB=-1.115e+02;SOR=2.584;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:39:546,39,0 1 149039031 rs11588033 T C 589.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.256;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=-0.351;SB=-3.480e+02;SOR=0.617;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:38,25:63:99:618,0,991 1 149039120 rs11579261 C T 301.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.576;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.965;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=-0.047;SB=-9.732e-01;SOR=1.802;VQSLOD=6.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,11:28:99:330,0,544 1 149039930 rs7545679 A G 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.080;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=1.332;SB=-1.765e+00;SOR=1.460;VQSLOD=8.48;culprit=FS GT:AD:DP:GQ:PL 0/1:11,9:20:99:309,0,333 1 149049274 rs34725262 A G 224.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.422;SB=0.00;SOR=0.593;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:253,0,291 1 149049485 rs12741994 G T 893.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.256;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=1.612;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.68;ReadPosRankSum=-0.390;SB=-5.080e+02;SOR=0.537;VQSLOD=8.70;culprit=QD GT:AD:DP:GQ:PL 0/1:59,44:103:99:922,0,1695 1 149050473 rs7526188 G A 62.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.83;ReadPosRankSum=0.339;SB=-2.801e+01;SOR=0.446;VQSLOD=9.04;culprit=QD GT:AD:DP:GQ:PL 0/1:10,3:13:91:91,0,253 1 149062088 rs12069044 A G 594.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.04;SB=-1.653e+02;SOR=2.303;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:623,45,0 1 149089962 rs1849365 A C 1305.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SB=-8.210e+02;SOR=0.739;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:96:1334,96,0 1 149090872 rs6593886 T C 311.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.34;SB=-1.643e+02;SOR=1.270;VQSLOD=5.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:340,24,0 1 149101316 rs12068828 C T 609.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=8.467;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=0.916;SB=-9.700e+01;SOR=3.056;VQSLOD=5.31;culprit=FS GT:AD:DP:GQ:PL 0/1:8,20:28:99:638,0,195 1 149242396 . A G 58.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.34;ReadPosRankSum=0.191;SB=-2.801e+01;SOR=0.132;VQSLOD=7.13;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:87:87,0,253 1 149288166 rs17162066 G A 508.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.472;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=54.28;MQ0=1;MQRankSum=0.955;QD=6.06;ReadPosRankSum=-0.643;SB=-1.920e+02;SOR=0.776;VQSLOD=0.550;culprit=QD GT:AD:DP:GQ:PL 0/1:58,26:84:99:537,0,1568 1 149290309 . G C 39.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=43.94;MQ0=2;MQRankSum=-2.823;QD=3.31;ReadPosRankSum=-0.825;SB=0.00;SOR=0.412;VQSLOD=1.82;culprit=QD GT:AD:DP:GQ:PL 0/1:6,6:12:68:68,0,222 1 149726032 rs2664744 T C 116.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.97;MQ0=0;MQRankSum=-2.965;QD=10.62;ReadPosRankSum=-1.004;SB=-6.300e+01;SOR=0.941;VQSLOD=1.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,7:11:99:145,0,126 1 149726118 rs2664745 A G 112.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.38;MQ0=0;MQRankSum=-3.224;QD=9.40;ReadPosRankSum=0.707;SB=-6.100e+01;SOR=0.631;VQSLOD=1.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,7:12:99:141,0,102 1 149906413 rs11205303 T C 1079.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.73;ReadPosRankSum=0.679;SB=-5.640e+02;SOR=0.630;VQSLOD=9.16;culprit=FS GT:AD:DP:GQ:PL 0/1:66,45:111:99:1108,0,1673 1 150048139 . AATAT A,AAT 697.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.721;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=34.89;RPA=11,9,10;RU=AT;ReadPosRankSum=0.173;SB=-4.419e+01;SOR=3.160;STR;VQSLOD=7.65;culprit=FS GT:AD:DP:GQ:PL 1/2:1,5,14:20:99:735,481,559,152,0,134 1 150055021 rs3736082 G A 368.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.676;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=-0.188;SB=-3.400e+01;SOR=0.460;VQSLOD=10.40;culprit=FS GT:AD:DP:GQ:PL 0/1:17,13:30:99:397,0,530 1 150128425 rs1545762 C T 702.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.94;SB=-1.981e+02;SOR=2.303;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:54:731,54,0 1 150129267 rs10749675 G A 1006.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.56;SB=-1.971e+02;SOR=2.985;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:81:1035,81,0 1 150203082 rs11412482 C CT 83.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.98;RPA=15,16;RU=T;ReadPosRankSum=0.462;SB=0.00;SOR=0.693;STR;VQSLOD=9.43;culprit=QD GT:AD:DP:GQ:PL 0/1:6,6:15:93:121,0,93 1 150203984 rs113913866 AT A 429.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.62;ReadPosRankSum=0.808;SB=-6.500e+01;SOR=0.741;VQSLOD=8.89;culprit=FS GT:AD:DP:GQ:PL 0/1:7,12:19:99:467,0,278 1 150232558 . C T 132.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.757;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.11;ReadPosRankSum=1.052;SB=-1.290e+02;SOR=0.268;VQSLOD=6.90;culprit=QD GT:AD:DP:GQ:PL 0/1:17,9:26:99:161,0,454 1 150234282 rs3850839 T G 112.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=0.179;SB=-2.901e+01;SOR=1.270;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:7,4:11:99:141,0,149 1 150241230 rs2275780 G T 1101.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.015;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=8.684;HaplotypeScore=6.8381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=0.169;SB=-4.820e+02;SOR=0.198;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 0/1:34,48:82:99:1130,0,1008 1 150249101 rs11205354 C A 489.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.325;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.418;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=-0.219;SB=-9.732e-01;SOR=1.609;VQSLOD=6.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,16:29:99:518,0,381 1 150252329 rs11205355 G A 705.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.43;SB=0.00;SOR=5.994;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:734,57,0 1 150252984 rs2274127 T G 335.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=-8.097e+01;SOR=2.303;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:364,27,0 1 150258838 rs1122967 C G 2233.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-7.590e+02;SOR=1.852;VQSLOD=4.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2262,163,0 1 150259400 rs9126 A C 1598.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-4.600e+02;SOR=2.256;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1627,117,0 1 150276429 rs471738 G A 875.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-1.513e+02;SOR=3.098;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:69:904,69,0 1 150276461 rs471657 G A 564.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=-4.176e+01;SOR=4.174;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:45:593,45,0 1 150281202 rs580060 A C 907.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.32;SB=0.00;SOR=4.977;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:69:936,69,0 1 150469480 rs12119249 C T 608.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.813;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.90;ReadPosRankSum=1.197;SB=-1.400e+02;SOR=0.892;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:11,23:35:99:637,0,265 1 150522471 rs374042827 C CTG 1132.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;DB;DP=57;ExcessHet=3.0103;FS=5.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.87;RPA=1,2;RU=TG;ReadPosRankSum=0.201;SB=-2.210e+02;SOR=1.536;STR;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 0/1:32,25:57:99:1170,0,1514 1 150526044 rs41317515 G C 1858.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=4.735;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=0.403;SB=-1.001e+03;SOR=0.692;VQSLOD=5.62;culprit=DP GT:AD:DP:GQ:PL 0/1:89,69:158:99:1887,0,2618 1 150526406 rs6681639 C T 1166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.422;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=0.599;SB=-5.560e+02;SOR=0.576;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:49,43:92:99:1195,0,1305 1 150528090 rs66703603 G GACAC 2135.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;DB;DP=118;ExcessHet=3.0103;FS=4.021;MLEAC=1;MLEAF=0.500;MQ=60.09;MQ0=0;MQRankSum=1.376;POSITIVE_TRAIN_SITE;QD=15.26;RPA=2,4;RU=AC;ReadPosRankSum=-0.986;SB=-6.540e+02;SOR=1.179;STR;VQSLOD=0.235;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:68,37:118:99:2173,0,4319 1 150528118 rs67907755 T TACAC 1590.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.30;RPA=3,5;RU=AC;ReadPosRankSum=-2.427;SB=-3.570e+02;SOR=0.715;STR;VQSLOD=8.01;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:51,27:89:99:1628,0,3169 1 150528175 rs35233292 GCA G 670.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;DB;DP=47;ExcessHet=3.0103;FS=5.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.97;RPA=2,1;RU=CA;ReadPosRankSum=1.231;SB=-5.150e-01;SOR=2.200;STR;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 0/1:26,16:47:99:708,0,1244 1 150528208 rs9728540 C T 364.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.923;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.51;ReadPosRankSum=0.903;SB=-1.765e+00;SOR=1.387;VQSLOD=8.06;culprit=FS GT:AD:DP:GQ:PL 0/1:15,12:27:99:393,0,437 1 150529322 rs67767989 T TAA 1053.73 PASS AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.81;SB=-5.090e+02;SOR=0.793;VQSLOD=4.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:1091,57,0 1 150530266 . GCTGAGC G 507.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.532;DP=31;ExcessHet=3.0103;FS=4.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.46;ReadPosRankSum=2.182;SB=-5.600e+01;SOR=1.609;VQSLOD=3.95;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:22,8:31:99:545,0,1920 1 150530273 . C A 221.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.589;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.983;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.21;ReadPosRankSum=1.886;SB=-1.807e+01;SOR=1.609;VQSLOD=3.63;culprit=QD GT:AD:DP:GQ:PL 0/1:19,8:27:99:250,0,528 1 150530274 . C A 202.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.213;DP=26;Dels=0.00;ExcessHet=3.0103;FS=4.262;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.80;ReadPosRankSum=1.668;SB=-1.905e+01;SOR=1.730;VQSLOD=3.86;culprit=QD GT:AD:DP:GQ:PL 0/1:18,8:26:99:231,0,489 1 150531008 rs10888382 T C 3228.29 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.46;SB=-1.436e+03;SOR=1.358;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3257,238,0 1 150531050 rs10749657 G A 1283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.652;HaplotypeScore=3.6701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=-0.308;SB=-6.780e+02;SOR=0.803;VQSLOD=7.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:79,56:135:99:1312,0,2025 1 150531170 rs10749658 C T 3862.77 PASS AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-2.085e+03;SOR=0.958;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,125:125:99:3891,292,0 1 150531380 rs11204664 T C 333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.778;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7935;MLEAC=1;MLEAF=0.500;MQ=59.69;MQ0=0;MQRankSum=0.747;POSITIVE_TRAIN_SITE;QD=8.34;ReadPosRankSum=-0.549;SB=-1.510e+02;SOR=0.752;VQSLOD=3.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,13:40:99:362,0,743 1 150550019 . T TA 1256.73 PASS AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;RPA=1,2;RU=A;SB=-3.130e+02;SOR=2.226;STR;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:87:1294,87,0 1 150551295 rs35661734 T C 926.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.524;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.2134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=-1.689;SB=-4.700e+02;SOR=0.729;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 0/1:32,35:67:99:955,0,973 1 150600181 rs2280078 C T 325.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.123;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=-1.441;SB=-9.400e+01;SOR=0.465;VQSLOD=10.08;culprit=FS GT:AD:DP:GQ:PL 0/1:15,12:27:99:354,0,389 1 150671243 rs139837908 AC A 387.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.854;DB;DP=25;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=0.384;SB=-1.490e+02;SOR=1.270;VQSLOD=6.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,11:25:99:425,0,605 1 150676674 . T TA 67.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.61;RPA=17,18;RU=A;ReadPosRankSum=-0.863;SB=-2.901e+01;SOR=0.566;STR;VQSLOD=7.40;culprit=QD GT:AD:DP:GQ:PL 0/1:17,9:31:99:105,0,280 1 150679033 rs1336900 G A 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.194;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.86;ReadPosRankSum=0.526;SB=-1.040e+02;SOR=0.483;VQSLOD=8.72;culprit=QD GT:AD:DP:GQ:PL 0/1:33,12:45:99:202,0,890 1 150679358 rs11586422 C T 851.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.052;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=0.754;SB=-4.850e+02;SOR=0.481;VQSLOD=9.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,30:53:99:880,0,563 1 150689984 . A AT 301.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;DP=27;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.57;RPA=12,13;RU=T;ReadPosRankSum=0.926;SB=-4.500e+01;SOR=1.402;STR;VQSLOD=5.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,15:27:99:339,0,141 1 150705755 rs1415148 G A 204.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.06;ReadPosRankSum=-0.156;SB=0.00;SOR=1.022;VQSLOD=10.43;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:233,0,160 1 150727539 rs2230061 G A 1252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=7.249;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=1.644;SB=-7.030e+02;SOR=0.525;VQSLOD=4.83;culprit=FS GT:AD:DP:GQ:PL 0/1:69,49:118:99:1281,0,1794 1 150730184 rs11204722 C A 696.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.236;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.493;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=0.617;SB=-1.766e+00;SOR=2.041;VQSLOD=6.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,21:38:99:725,0,536 1 150730279 rs2275235 A G 1921.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.507;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=2.531;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=-0.491;SB=-8.970e+02;SOR=0.461;VQSLOD=9.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,70:121:99:1950,0,1391 1 150771703 rs10788796 T C 2027.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.04;SB=-1.123e+03;SOR=1.091;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2056,147,0 1 150779755 rs6587522 C T 2622.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3447;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.04;SB=-1.629e+03;SOR=0.941;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:2651,190,0 1 150789961 rs3894771 A T 236.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=2.401;SB=-2.801e+01;SOR=2.030;VQSLOD=5.05;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,9:18:99:265,0,210 1 150790289 . C CA 132.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQ0=0;MQRankSum=1.171;QD=4.58;RPA=18,19;RU=A;ReadPosRankSum=0.522;SB=-5.800e+01;SOR=0.818;STR;VQSLOD=1.59;culprit=QD GT:AD:DP:GQ:PL 0/1:18,11:32:99:170,0,264 1 150801466 rs3738483 T C 1041.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.73;SB=-2.021e+02;SOR=2.985;VQSLOD=7.08;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,30:30:78:1070,78,0 1 150804429 rs10305704 A C 408.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.978;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=0.833;SB=-1.340e+02;SOR=0.495;VQSLOD=10.21;culprit=FS GT:AD:DP:GQ:PL 0/1:10,15:25:99:437,0,219 1 150808889 rs2228099 C G 715.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.937;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-1.152;SB=-3.250e+02;SOR=0.557;VQSLOD=10.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,27:57:99:744,0,786 1 150811794 rs2256355 T C 405.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.124;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-0.207;SB=-3.300e+01;SOR=1.284;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:14,14:28:99:434,0,403 1 150815054 rs149242771 GA G 121.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.599;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.14;RPA=9,8;RU=A;ReadPosRankSum=-0.156;SB=0.00;SOR=1.022;STR;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:14:99:159,0,118 1 150923099 rs17661357 T C 2829.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.462;DB;DP=182;Dels=0.00;ExcessHet=3.0103;FS=0.569;HaplotypeScore=2.6550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=-0.162;SB=-1.312e+03;SOR=0.637;VQSLOD=7.75;culprit=DP GT:AD:DP:GQ:PL 0/1:79,103:182:99:2858,0,1919 1 150923774 rs2124952 T A 219.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.726;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=11.563;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=0.458;SB=-8.700e+01;SOR=1.409;VQSLOD=5.10;culprit=FS GT:AD:DP:GQ:PL 0/1:11,10:21:99:248,0,298 1 150935872 rs2280627 A G 968.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.296;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=1.724;HaplotypeScore=8.8824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.50;ReadPosRankSum=0.446;SB=-5.440e+02;SOR=0.485;VQSLOD=8.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,44:102:99:997,0,1654 1 150938571 rs8444 G A 457.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.987;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=1.950;SB=-1.750e+02;SOR=0.527;VQSLOD=9.83;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:14,19:33:99:486,0,376 1 150938616 rs267739 G A 1703.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.55;SB=-5.090e+02;SOR=2.137;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1732,129,0 1 150939744 rs11204750 C A 892.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.580;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=4.891;HaplotypeScore=2.3913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=0.852;SB=-3.110e+02;SOR=1.407;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 0/1:37,34:71:99:921,0,1072 1 150940357 rs6656535 G T 310.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.359;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=-0.247;SB=-1.765e+00;SOR=0.793;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:10,11:21:99:339,0,302 1 150940358 rs59988025 C T 257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.723;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=-0.756;SB=-1.765e+00;SOR=2.147;VQSLOD=5.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,10:18:99:286,0,244 1 150941381 rs752376 C T 404.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.851;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=1.720;SB=-6.200e+01;SOR=1.151;VQSLOD=7.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,16:36:99:433,0,604 1 150944541 rs267737 A G 1040.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=-1.255e+02;SOR=3.767;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:78:1069,78,0 1 150958977 rs2305814 T C 1357.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=5.438;HaplotypeScore=2.7351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=0.895;SB=-6.760e+02;SOR=0.877;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 0/1:41,47:88:99:1386,0,1128 1 150960350 rs7532008 A C 1109.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.555;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=1.437;SB=-4.630e+02;SOR=0.693;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 0/1:46,43:89:99:1138,0,1102 1 150960928 rs12033744 G A 79.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.70;ReadPosRankSum=-0.142;SB=-1.765e+00;SOR=0.693;VQSLOD=9.13;culprit=QD GT:AD:DP:GQ:PL 0/1:10,4:14:99:108,0,360 1 150969992 rs2925740 T C 2796.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-1.571e+03;SOR=0.839;VQSLOD=5.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2825,211,0 1 150970577 rs2925741 G T 3249.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.66;SB=-1.396e+03;SOR=1.300;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3278,241,0 1 150970836 rs1673160 T A 657.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.792;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.451;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=-0.110;SB=-9.400e+01;SOR=1.002;VQSLOD=7.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,24:43:99:686,0,496 1 150972538 rs708909 G A 1262.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;SB=-1.135e+02;SOR=4.021;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1291,102,0 1 150973514 rs771203 G A 446.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-1.135e+02;SOR=2.303;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:475,36,0 1 150974162 rs771204 G A 1283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.327;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=-0.826;SB=-5.680e+02;SOR=0.761;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 0/1:76,53:129:99:1312,0,2153 1 150975108 rs771205 T C 3732.77 PASS AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=-2.366e+03;SOR=0.793;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,124:124:99:3761,280,0 1 150990825 rs3738480 A G 585.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.46;SB=-4.276e+01;SOR=4.294;VQSLOD=7.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:45:614,45,0 1 150991221 rs11204758 A G 1592.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.63;SB=-2.001e+02;SOR=3.912;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1621,123,0 1 150991285 rs6664220 A G 491.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.97;SB=0.00;SOR=5.283;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:520,39,0 1 150999737 rs11204762 A G 1471.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.750;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=5.305;HaplotypeScore=5.3994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=0.640;SB=-5.120e+02;SOR=1.304;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 0/1:46,54:100:99:1500,0,1189 1 151001583 rs6691701 G A 819.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=-6.497e+01;SOR=4.255;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:72:848,72,0 1 151006537 rs3738477 G A 1880.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.531;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.651;HaplotypeScore=2.8596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.910;SB=-1.023e+03;SOR=0.775;VQSLOD=8.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,70:129:99:1909,0,1490 1 151006539 rs3738476 C A 3941.77 PASS AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8596;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-2.413e+03;SOR=0.772;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,129:129:99:3970,298,0 1 151015299 . G GA 420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.062;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;MQRankSum=0.487;POSITIVE_TRAIN_SITE;QD=20.00;RPA=11,12;RU=A;ReadPosRankSum=0.420;SB=-6.197e+01;SOR=1.609;STR;VQSLOD=3.34;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,19:21:12:457,12,0 1 151018861 rs6587552 A G 368.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-1.215e+02;SOR=1.609;VQSLOD=5.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:397,30,0 1 151019180 rs6587553 A G 928.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.96;SB=-4.940e+02;SOR=1.214;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:69:957,69,0 1 151026815 rs2902810 C T 2416.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.77;SB=-1.207e+03;SOR=1.075;VQSLOD=5.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2445,181,0 1 151028234 rs11204767 G T 2676.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-6.500e+02;SOR=2.833;VQSLOD=2.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2705,205,0 1 151039609 rs3738481 A G 1026.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-1.901e+02;SOR=3.193;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:87:1055,87,0 1 151070252 rs35034487 CA C 630.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;DB;DP=41;ExcessHet=3.0103;FS=5.905;MLEAC=1;MLEAF=0.500;MQ=60.26;MQ0=0;MQRankSum=0.563;POSITIVE_TRAIN_SITE;QD=15.77;RPA=14,13;RU=A;ReadPosRankSum=-0.339;SB=-6.500e+01;SOR=2.428;STR;VQSLOD=0.184;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,32:41:99:668,0,101 1 151104950 . G A 951.77 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.70;SB=-4.560e+02;SOR=1.214;VQSLOD=4.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:75:980,75,0 1 151105824 rs4971006 C G 333.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.81;SB=-1.841e+02;SOR=1.022;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:362,27,0 1 151108137 rs4971007 T G 6388.77 PASS AC=2;AF=1.00;AN=2;DB;DP=203;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-3.104e+03;SOR=1.265;VQSLOD=5.37;culprit=DP GT:AD:DP:GQ:PL 1/1:0,203:203:99:6417,467,0 1 151114882 . C CT 2723.73 PASS AC=2;AF=1.00;AN=2;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;RPA=1,2;RU=T;SB=-8.120e+02;SOR=1.802;STR;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2761,188,0 1 151115186 rs12569193 C T 713.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.05;SB=0.00;SOR=5.994;VQSLOD=8.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:742,57,0 1 151139073 . CT C 198.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQ0=0;MQRankSum=1.480;QD=3.61;RPA=14,13;RU=T;ReadPosRankSum=1.280;SB=-7.900e+01;SOR=0.610;STR;VQSLOD=1.13;culprit=QD GT:AD:DP:GQ:PL 0/1:39,16:63:99:236,0,800 1 151144057 rs28730723 C T 2354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;DB;DP=190;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.717;SB=-1.328e+03;SOR=0.711;VQSLOD=7.26;culprit=DP GT:AD:DP:GQ:PL 0/1:102,88:190:99:2383,0,2680 1 151146186 rs7552226 C G 2243.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.14;SB=-9.350e+02;SOR=1.734;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2272,166,0 1 151146276 rs7521416 T C 544.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.05;SB=0.00;SOR=5.670;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:573,48,0 1 151171811 rs6683396 C G 426.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=0.00;SOR=5.136;VQSLOD=8.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:455,36,0 1 151205303 rs7544947 A G 1192.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.06;SB=0.00;SOR=6.869;VQSLOD=5.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:90:1221,90,0 1 151205349 rs7545024 A G 365.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.72;SB=0.00;SOR=4.804;VQSLOD=8.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:394,30,0 1 151209063 rs12407426 C T 3428.77 PASS AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-1.131e+03;SOR=1.940;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,115:115:99:3457,256,0 1 151209297 . C CTTT 895.73 PASS AC=2;AF=1.00;AN=2;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.50;MQ0=0;NEGATIVE_TRAIN_SITE;QD=25.59;RPA=22,25;RU=T;SB=-1.240e+02;SOR=5.421;STR;VQSLOD=0.759;culprit=FS GT:AD:DP:GQ:PL 1/1:8,27:64:41:682,41,0 1 151210789 rs7532935 C T 1176.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.70;SB=-6.260e+02;SOR=1.206;VQSLOD=6.99;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,41:41:87:1205,87,0 1 151212399 rs3842532 C CCTT 3443.73 PASS AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;QD=31.61;SB=-9.310e+02;SOR=2.066;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:3481,169,0 1 151227371 rs3811405 A G 411.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.31;SB=-7.497e+01;SOR=2.670;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:440,33,0 1 151237589 rs3216063 TC T 3361.73 PASS AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.48;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.96;RPA=7,6;RU=C;SB=-1.595e+03;SOR=0.754;STR;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,99:113:99:3399,298,0 1 151238222 rs2275900 G A 902.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SB=-7.597e+01;SOR=4.332;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:75:931,75,0 1 151239051 . T C 4195.77 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.14;SB=-2.420e+03;SOR=0.937;VQSLOD=4.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,144:144:99:4224,319,0 1 151239570 rs10888408 C T 2804.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;SB=-1.480e+03;SOR=1.038;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,92:92:99:2833,214,0 1 151254041 rs3811406 T C 1412.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-1.841e+02;SOR=3.556;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1441,108,0 1 151261189 rs59390942 C T 206.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.092;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.738;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.66;ReadPosRankSum=-1.939;SB=-5.150e-01;SOR=1.702;VQSLOD=4.80;culprit=QD GT:AD:DP:GQ:PL 0/1:19,8:27:99:235,0,548 1 151263782 rs10788803 A G 817.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.07;SB=-1.255e+02;SOR=3.442;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:63:846,63,0 1 151267155 rs71693057 TCTC T 1264.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;DB;DP=57;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=1.137;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=23.86;ReadPosRankSum=0.134;SB=-3.400e+02;SOR=0.487;VQSLOD=0.309;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,24:57:99:1302,0,1650 1 151271782 rs10888409 A C 787.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.82;SB=-2.411e+02;SOR=2.124;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:816,60,0 1 151278505 rs2031797 A G 2251.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-1.006e+03;SOR=1.418;VQSLOD=7.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2280,169,0 1 151280400 rs1536617 C G 1408.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.54;SB=-5.970e+02;SOR=1.402;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1437,105,0 1 151288172 rs1056847 G A 3814.77 PASS AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6795;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.28;SB=-2.015e+03;SOR=1.099;VQSLOD=4.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,126:126:99:3843,292,0 1 151288391 rs1752379 A G 5828.77 PASS AC=2;AF=1.00;AN=2;DB;DP=187;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.34;SB=-3.063e+03;SOR=0.904;VQSLOD=5.85;culprit=DP GT:AD:DP:GQ:PL 1/1:0,186:187:99:5857,439,0 1 151315287 rs2233854 G C 1203.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.875;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.296;SB=-5.480e+02;SOR=0.759;VQSLOD=8.48;culprit=FS GT:AD:DP:GQ:PL 0/1:40,44:84:99:1232,0,1040 1 151316161 rs1752386 G A 3534.77 PASS AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.47;SB=-1.251e+03;SOR=1.891;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,116:117:99:3563,265,0 1 151337788 rs10788804 A G 1923.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.03;SB=-1.109e+03;SOR=0.899;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1952,141,0 1 151339069 . C T 579.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.207;HaplotypeScore=2.6766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.26;ReadPosRankSum=0.248;SB=-2.980e+02;SOR=0.519;VQSLOD=7.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,19:38:99:608,0,618 1 151341703 rs55906289 G A 495.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.925;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.122;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-0.270;SB=-9.732e-01;SOR=2.303;VQSLOD=5.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,17:36:99:524,0,627 1 151341728 . G GC 211.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.62;RPA=3,4;RU=C;ReadPosRankSum=2.015;SB=-1.765e+00;SOR=0.976;STR;VQSLOD=9.10;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:14,8:22:99:249,0,497 1 151372047 rs2296840 C T 670.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.065;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.023;HaplotypeScore=1.9336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-0.646;SB=-4.360e+02;SOR=0.463;VQSLOD=10.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,29:58:99:699,0,862 1 151372138 rs7172 G A 758.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.177;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=7.558;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=-0.591;SB=-4.670e+02;SOR=0.190;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 0/1:28,29:57:99:787,0,825 1 151372770 rs2495390 A G 2372.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.2460;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.89;SB=-6.940e+02;SOR=1.981;VQSLOD=7.56;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,68:68:99:2401,178,0 1 151373200 rs2495391 T C 2954.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.36;SB=-1.246e+03;SOR=1.329;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2983,223,0 1 151374152 rs72135104 GCTTACA G 3488.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;DB;DP=96;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.60;ReadPosRankSum=1.157;SB=-1.302e+03;SOR=0.818;VQSLOD=5.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,41:96:99:3526,0,4117 1 151377248 rs6667714 T C 1201.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.99;SB=-2.800e+02;SOR=2.584;VQSLOD=5.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:93:1230,93,0 1 151377407 rs1571294 A C 1582.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=2.954;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=1.017;SB=-9.350e+02;SOR=0.464;VQSLOD=7.70;culprit=DP GT:AD:DP:GQ:PL 0/1:87,63:150:99:1611,0,2373 1 151379250 rs2274535 G A 208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=1.495;SB=-1.767e+00;SOR=1.609;VQSLOD=8.43;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:237,0,196 1 151380504 rs200057999 AAAAG A 1223.73 PASS AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.65;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;SB=-1.833e+02;SOR=3.258;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:83:1261,83,0 1 151381154 rs139265098 C T 973.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.032;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=4.789;HaplotypeScore=1.9145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=0.455;SB=-5.460e+02;SOR=0.305;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:35,39:74:99:1002,0,981 1 151381320 rs3831142 GA G 444.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.513;DB;DP=37;ExcessHet=3.0103;FS=1.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;RPA=7,6;RU=A;ReadPosRankSum=0.383;SB=-9.200e+01;SOR=1.101;STR;VQSLOD=7.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,20:37:99:482,0,366 1 151384711 rs1887545 A G 1606.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.45;SB=-3.670e+02;SOR=2.687;VQSLOD=1.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1635,117,0 1 151384733 rs3748550 G A 2016.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.61;SB=-4.840e+02;SOR=2.722;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:2045,154,0 1 151395782 rs2274533 T C 119.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.368;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.65;ReadPosRankSum=1.480;SB=0.00;SOR=0.169;VQSLOD=9.54;culprit=QD GT:AD:DP:GQ:PL 0/1:13,5:18:99:148,0,441 1 151396037 rs2274534 A C 574.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.819;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=3.982;HaplotypeScore=3.6217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=-0.083;SB=-1.780e+02;SOR=1.392;VQSLOD=7.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,25:60:99:603,0,910 1 151400942 rs11204811 A C 284.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.344;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.291;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=1.965;SB=-1.070e+02;SOR=0.160;VQSLOD=9.00;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:12,12:24:99:313,0,351 1 151402045 rs6587577 A G 3404.77 PASS AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.35;SB=-1.232e+03;SOR=1.961;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,116:116:99:3433,268,0 1 151495796 rs2337359 T C 836.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.837;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=1.117;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-0.869;SB=-1.970e+02;SOR=0.929;VQSLOD=7.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,31:69:99:865,0,1061 1 151497140 rs1573130 T C 891.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.415;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.844;HaplotypeScore=3.4034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-0.147;SB=-6.270e+02;SOR=0.571;VQSLOD=9.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,37:80:99:920,0,1134 1 151497376 rs1573129 G A 50.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.62;ReadPosRankSum=1.111;SB=0.00;SOR=0.180;VQSLOD=9.51;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:79:79,0,294 1 151499635 rs2298168 C T 525.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.571;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.39;ReadPosRankSum=-1.185;SB=-1.290e+02;SOR=0.686;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:35,21:56:99:554,0,1047 1 151501698 rs2096232 A G 1172.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.65;SB=-5.640e+02;SOR=1.662;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:90:1201,90,0 1 151501737 rs6678068 T C 1647.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.93;SB=-9.550e+02;SOR=1.217;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1676,120,0 1 151504690 rs7549296 G A 90.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=0.204;SB=0.00;SOR=0.412;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:119,0,214 1 151504778 rs6673116 C T 550.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.557;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=-0.353;SB=-2.340e+02;SOR=0.631;VQSLOD=10.32;culprit=FS GT:AD:DP:GQ:PL 0/1:16,21:37:99:579,0,414 1 151508061 rs11204842 A C 427.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=0.418;SB=-5.700e+01;SOR=0.582;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:23,15:38:99:456,0,715 1 151509966 . T TA 160.86 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.221;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.87;RPA=12,13;RU=A;ReadPosRankSum=-0.967;SB=0.00;SOR=3.056;STR;VQSLOD=5.48;culprit=FS GT:AD:DP:GQ:PL 1/1:1,8:11:2:196,2,0 1 151534142 rs4132646 A C 1539.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=0.303;SB=-6.390e+02;SOR=0.602;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:40,60:100:99:1568,0,905 1 151542099 rs3748610 G T 5655.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.892;DB;DP=184;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.74;ReadPosRankSum=0.923;SB=-2.529e+03;SOR=1.209;VQSLOD=1.45;culprit=DP GT:AD:DP:GQ:PL 1/1:1,183:184:99:5684,421,0 1 151546931 rs6660238 A G 784.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.01;SB=0.00;SOR=6.184;VQSLOD=8.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:813,63,0 1 151551078 rs1544218 A G 395.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=0.00;SOR=5.136;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:424,36,0 1 151551320 rs3748608 G A 3872.77 PASS AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4716;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-2.144e+03;SOR=0.793;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,124:124:99:3901,295,0 1 151552301 rs3833527 TG T 510.73 PASS AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=0.00;SOR=5.136;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:13:36:548,36,0 1 151553918 rs10494267 C T 408.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;SB=-3.377e+01;SOR=3.611;VQSLOD=8.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:437,33,0 1 151554147 rs113866428 G A 755.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.598;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.028;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.60;ReadPosRankSum=0.540;SB=-4.080e+02;SOR=0.443;VQSLOD=8.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,31:60:99:784,0,785 1 151554503 rs1891592 T C 4928.77 PASS AC=2;AF=1.00;AN=2;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-1.789e+03;SOR=1.671;VQSLOD=6.27;culprit=DP GT:AD:DP:GQ:PL 1/1:0,155:155:99:4957,361,0 1 151634512 . A AT 229.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.216;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.44;RPA=7,8;RU=T;ReadPosRankSum=-1.643;SB=-2.203e+01;SOR=1.314;STR;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 0/1:11,11:22:99:267,0,248 1 151634803 rs11808761 G A 711.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.057;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.73;ReadPosRankSum=-0.638;SB=-7.597e+01;SOR=0.610;VQSLOD=8.68;culprit=FS GT:AD:DP:GQ:PL 0/1:7,23:30:99:740,0,198 1 151665562 . G GT 317.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.88;RPA=10,11;RU=T;ReadPosRankSum=1.093;SB=-8.400e+01;SOR=0.624;STR;VQSLOD=8.47;culprit=QD GT:AD:DP:GQ:PL 0/1:36,18:61:99:355,0,782 1 151665857 rs3215299 CT C 1445.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.856;DB;DP=94;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=60.34;MQ0=0;MQRankSum=2.138;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=-1.561;SB=-4.520e+02;SOR=0.871;VQSLOD=0.227;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,38:94:99:1483,0,2526 1 151675618 rs1308150 T C 1093.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.44;SB=-5.300e+02;SOR=1.044;VQSLOD=5.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:81:1122,81,0 1 151679441 rs1308152 T C 226.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.227;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=1.871;HaplotypeScore=1.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=0.899;SB=-9.000e+01;SOR=1.329;VQSLOD=7.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,10:19:99:255,0,216 1 151679596 rs1308153 G A 303.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.517;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.80;ReadPosRankSum=-1.035;SB=-1.840e+02;SOR=0.602;VQSLOD=10.01;culprit=FS GT:AD:DP:GQ:PL 0/1:19,12:31:99:332,0,495 1 151679900 rs10888428 C T 464.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=11.720;HaplotypeScore=2.8262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=-1.375;SB=-2.740e+02;SOR=0.063;VQSLOD=5.31;culprit=FS GT:AD:DP:GQ:PL 0/1:18,20:38:99:493,0,550 1 151686983 rs939592 T A 1663.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.627;HaplotypeScore=2.6203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=1.192;SB=-1.022e+03;SOR=0.618;VQSLOD=8.72;culprit=DP GT:AD:DP:GQ:PL 0/1:75,64:139:99:1692,0,1938 1 151700189 rs3216068 C CCTG 2267.73 PASS AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.87;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.09;SB=-4.520e+02;SOR=2.774;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:2305,111,0 1 151734136 rs1196454 G A 357.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=-1.813;SB=-4.076e+01;SOR=0.420;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:8,13:21:99:386,0,269 1 151735545 rs1196455 A G 1951.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.421;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=-0.940;SB=-1.014e+03;SOR=0.714;VQSLOD=8.66;culprit=DP GT:AD:DP:GQ:PL 0/1:76,77:153:99:1980,0,1914 1 151740479 rs1196457 C A 1236.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.71;SB=-3.920e+02;SOR=1.923;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:93:1265,93,0 1 151740666 rs2495397 T C 5344.77 PASS AC=2;AF=1.00;AN=2;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-3.104e+03;SOR=0.992;VQSLOD=4.69;culprit=DP GT:AD:DP:GQ:PL 1/1:0,173:173:99:5373,388,0 1 151742494 rs4995159 A G 398.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.860;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQ0=0;MQRankSum=0.877;POSITIVE_TRAIN_SITE;QD=22.15;ReadPosRankSum=-0.266;SB=-4.176e+01;SOR=1.085;VQSLOD=3.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,14:18:99:427,0,108 1 151747043 rs1123855 C T 982.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-1.018;SB=-5.640e+02;SOR=0.799;VQSLOD=8.99;culprit=FS GT:AD:DP:GQ:PL 0/1:38,38:76:99:1011,0,1099 1 151747733 rs1781421 C T 591.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.463;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=7.131;HaplotypeScore=1.9931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-1.164;SB=-3.070e+02;SOR=0.160;VQSLOD=8.65;culprit=FS GT:AD:DP:GQ:PL 0/1:21,23:44:99:620,0,656 1 151747799 rs1781419 G A 1185.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=-5.540e+02;SOR=1.148;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:93:1214,93,0 1 151748425 rs3923394 C A 231.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.456;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=9.558;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=1.921;SB=-1.352e-01;SOR=3.611;VQSLOD=5.02;culprit=FS GT:AD:DP:GQ:PL 0/1:13,8:21:99:260,0,368 1 151748829 rs3811413 G A 515.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.760;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=-1.156;SB=-1.510e+02;SOR=0.859;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:22,18:40:99:544,0,661 1 151751081 rs1996729 G A 497.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.064;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-0.337;SB=-6.600e+01;SOR=0.922;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:14,17:31:99:526,0,378 1 151752733 rs140770319 ATACTATCTATACAACCAGTCCTCAATTACTTTATATACAACCTCAGT A 1617.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.03;MQ0=0;MQRankSum=2.109;POSITIVE_TRAIN_SITE;QD=7.38;ReadPosRankSum=0.059;SB=-4.870e+02;SOR=0.693;VQSLOD=3.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,7:21:99:1655,0,2476 1 151754112 rs35077383 T C 537.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.461;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=-2.018;SB=-2.470e+02;SOR=0.824;VQSLOD=8.41;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:34,23:58:99:566,0,894 1 151773387 rs1521179 G A 2611.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.35;SB=-1.257e+03;SOR=1.481;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2640,196,0 1 151773851 rs61746299 T A 4088.77 PASS AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=-2.162e+03;SOR=1.000;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,132:132:99:4117,304,0 1 151783688 rs939595 A C 1849.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.49;SB=-1.741e+02;SOR=4.133;VQSLOD=5.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1878,138,0 1 151789588 . C CTGTGTG 1473.73 PASS AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.20;RPA=10,13;RU=TG;SB=-6.176e+01;SOR=4.712;STR;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:23:63:1511,63,0 1 151798295 rs12030974 G A 995.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=1.905;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-0.332;SB=-5.900e+02;SOR=0.446;VQSLOD=9.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,41:77:99:1024,0,828 1 151801951 rs4845606 G A 495.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.592;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.13;ReadPosRankSum=-1.184;SB=-3.320e+02;SOR=0.776;VQSLOD=8.76;culprit=QD GT:AD:DP:GQ:PL 0/1:38,23:63:99:524,0,974 1 151803449 rs80223568 G T 503.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.770;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=1.091;SB=-2.860e+02;SOR=0.709;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:9,23:32:99:532,0,198 1 151803664 rs72692783 C T 387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.856;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.840;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-0.593;SB=-1.380e+02;SOR=0.223;VQSLOD=9.36;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,16:29:99:416,0,351 1 151811226 rs6673556 G A 353.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-7.497e+01;SOR=2.303;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:382,30,0 1 151820298 rs6587624 G C 4589.77 PASS AC=2;AF=1.00;AN=2;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.16;SB=-3.168e+03;SOR=0.756;VQSLOD=5.94;culprit=DP GT:AD:DP:GQ:PL 1/1:0,163:163:99:4618,325,0 1 151820324 rs6587625 T C 4391.77 PASS AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.97;SB=-2.898e+03;SOR=0.900;VQSLOD=4.87;culprit=DP GT:AD:DP:GQ:PL 1/1:0,157:157:99:4420,313,0 1 151825713 rs998500 G C 160.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.742;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=-2.028;SB=0.00;SOR=0.569;VQSLOD=9.36;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,6:13:99:189,0,210 1 151825991 rs7556386 G T 1179.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.099;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.830;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-1.381;SB=-4.390e+02;SOR=0.860;VQSLOD=7.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,47:95:99:1208,0,1231 1 151861477 rs1352654 A G 386.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.87;SB=0.00;SOR=4.804;VQSLOD=8.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:415,30,0 1 151862661 rs1060870 G A 188.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.196;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.51;ReadPosRankSum=0.586;SB=-1.514e+01;SOR=1.714;VQSLOD=5.14;culprit=QD GT:AD:DP:GQ:PL 0/1:21,8:29:99:217,0,530 1 151867560 rs3762427 G A 1487.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-7.770e+02;SOR=1.022;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1516,114,0 1 151881885 rs3748805 A C 1468.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-3.550e+02;SOR=2.786;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1497,117,0 1 152009530 rs3811422 T C 381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=0.00;SOR=4.977;VQSLOD=8.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:410,30,0 1 152056600 rs4147208 T C 386.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.084;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.814;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=-0.014;SB=-1.980e+02;SOR=0.919;VQSLOD=6.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,17:40:99:415,0,578 1 152060796 rs2935207 A T 520.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-4.176e+01;SOR=4.174;VQSLOD=7.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:549,42,0 1 152079823 rs1131473 C G 3742.77 PASS AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.72;SB=-1.820e+03;SOR=1.179;VQSLOD=6.45;culprit=DP GT:AD:DP:GQ:PL 1/1:0,118:118:99:3771,271,0 1 152079989 rs1131471 T G 3876.77 PASS AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.31;SB=-2.159e+03;SOR=0.950;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,120:120:99:3905,283,0 1 152081921 rs2496253 G C 2737.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-1.673e+03;SOR=0.739;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2766,202,0 1 152085505 rs2515663 A C 2042.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.838;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.60;ReadPosRankSum=-0.468;SB=-1.373e+03;SOR=0.283;VQSLOD=7.50;culprit=FS GT:AD:DP:GQ:PL 1/1:1,73:74:99:2071,153,0 1 152185762 rs41266112 C G 1389.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.90;SB=-7.620e+02;SOR=0.741;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1418,105,0 1 152185768 rs41266114 T G 1140.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=-5.790e+02;SOR=0.746;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:90:1169,90,0 1 152185774 rs61814932 A G 1035.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-5.520e+02;SOR=0.752;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:84:1064,84,0 1 152185780 rs41266116 G A 902.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SB=-4.700e+02;SOR=0.765;VQSLOD=5.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:72:931,72,0 1 152185790 rs76102381 T C 735.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=28.17;SB=-3.950e+02;SOR=0.784;VQSLOD=4.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:764,60,0 1 152185792 rs74493243 G A 725.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=34.56;SB=-3.770e+02;SOR=0.784;VQSLOD=4.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:754,60,0 1 152185796 rs41266118 A G 768.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-3.980e+02;SOR=0.784;VQSLOD=5.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:797,60,0 1 152191709 rs6662450 C G 5314.77 PASS AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.85;SB=-3.003e+03;SOR=0.841;VQSLOD=6.33;culprit=DP GT:AD:DP:GQ:PL 1/1:0,157:157:99:5343,388,0 1 152191879 rs10788828 G A 5661.77 PASS AC=2;AF=1.00;AN=2;DB;DP=178;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6812;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.81;SB=-3.193e+03;SOR=0.811;VQSLOD=5.56;culprit=DP GT:AD:DP:GQ:PL 1/1:0,178:178:99:5690,424,0 1 152192293 rs7520375 C T 4195.77 PASS AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.04;SB=-2.252e+03;SOR=0.916;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,127:127:99:4224,310,0 1 152192395 rs61814946 G A 4271.77 PASS AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7477;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-2.399e+03;SOR=0.801;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,135:136:99:4300,325,0 1 152192631 rs6587647 C T 5273.77 PASS AC=2;AF=1.00;AN=2;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-3.202e+03;SOR=0.853;VQSLOD=5.74;culprit=DP GT:AD:DP:GQ:PL 1/1:0,173:173:99:5302,385,0 1 152192687 rs6587648 T C 4879.77 PASS AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-2.444e+03;SOR=1.215;VQSLOD=6.41;culprit=DP GT:AD:DP:GQ:PL 1/1:0,158:159:99:4908,358,0 1 152192825 rs6666097 C T 3673.77 PASS AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-1.771e+03;SOR=1.227;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,118:118:99:3702,286,0 1 152192978 rs6587649 T C 6514.77 PASS AC=2;AF=1.00;AN=2;DB;DP=212;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6503;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-3.692e+03;SOR=0.751;VQSLOD=5.41;culprit=DP GT:AD:DP:GQ:PL 1/1:0,212:212:99:6543,488,0 1 152193052 rs6587650 A G 6867.77 PASS AC=2;AF=1.00;AN=2;DB;DP=216;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-3.872e+03;SOR=0.712;VQSLOD=5.60;culprit=DP GT:AD:DP:GQ:PL 1/1:0,216:216:99:6896,518,0 1 152193121 rs6587651 G T 6401.77 PASS AC=2;AF=1.00;AN=2;DB;DP=211;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4024;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.34;SB=-3.902e+03;SOR=0.781;VQSLOD=5.51;culprit=DP GT:AD:DP:GQ:PL 1/1:0,211:211:99:6430,476,0 1 152193286 rs7545406 G T 6253.77 PASS AC=2;AF=1.00;AN=2;DB;DP=198;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5481;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-3.429e+03;SOR=0.890;VQSLOD=5.77;culprit=DP GT:AD:DP:GQ:PL 1/1:0,198:198:99:6282,470,0 1 152193291 rs6587652 G T 6637.77 PASS AC=2;AF=1.00;AN=2;DB;DP=201;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.02;SB=-3.603e+03;SOR=0.875;VQSLOD=5.29;culprit=DP GT:AD:DP:GQ:PL 1/1:0,201:201:99:6666,491,0 1 152193544 rs7535536 A G 5935.77 PASS AC=2;AF=1.00;AN=2;DB;DP=176;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.73;SB=-2.836e+03;SOR=1.121;VQSLOD=6.31;culprit=DP GT:AD:DP:GQ:PL 1/1:0,176:176:99:5964,439,0 1 152193547 rs6587653 G A 5841.77 PASS AC=2;AF=1.00;AN=2;DB;DP=174;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.57;SB=-2.715e+03;SOR=1.159;VQSLOD=5.66;culprit=DP GT:AD:DP:GQ:PL 1/1:0,174:174:99:5870,433,0 1 152193851 rs11204937 C T 2247.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.82;SB=-1.450e+03;SOR=0.744;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2276,166,0 1 152193990 rs11204938 A G 726.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=-2.341e+02;SOR=2.215;VQSLOD=5.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:57:755,57,0 1 152195728 rs34061715 AT A 1456.73 PASS AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.12;RPA=11,10;RU=T;SB=-4.810e+02;SOR=1.733;STR;VQSLOD=5.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:67:99:1494,173,0 1 152195851 rs71582220 TAGTC T 731.73 PASS AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;RPA=2,1;RU=AGTC;SB=0.00;SOR=4.977;STR;VQSLOD=8.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:12:33:769,33,0 1 152276803 rs80088153 T G 2996.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.991;DB;DP=248;Dels=0.00;ExcessHet=3.0103;FS=4.256;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=-0.159;SB=-1.716e+03;SOR=0.860;VQSLOD=5.56;culprit=DP GT:AD:DP:GQ:PL 0/1:131,117:248:99:3025,0,3513 1 152286126 rs11582620 A G 5821.77 PASS AC=2;AF=1.00;AN=2;DB;DP=184;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-3.499e+03;SOR=0.831;VQSLOD=6.06;culprit=DP GT:AD:DP:GQ:PL 1/1:0,184:184:99:5850,442,0 1 152384833 rs1923492 T C 1272.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.41;SB=-2.890e+02;SOR=2.712;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:93:1301,93,0 1 152488146 rs16834168 G A 143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=0.682;SB=-9.500e+01;SOR=0.693;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:172,0,178 1 152538358 rs17659359 G C 744.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.633;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.899;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.97;ReadPosRankSum=-0.334;SB=-3.190e+02;SOR=0.869;VQSLOD=7.41;culprit=QD GT:AD:DP:GQ:PL 0/1:52,31:83:99:773,0,1456 1 152552285 rs512208 C A 999.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.101;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=3.195;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=56.00;MQ0=0;MQRankSum=-0.466;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-0.240;SB=-6.890e+02;SOR=0.378;VQSLOD=0.136;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,42:74:99:1028,0,841 1 152552461 . C A 136.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.690;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.242;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.20;ReadPosRankSum=0.331;SB=-1.110e+02;SOR=0.180;VQSLOD=7.72;culprit=QD GT:AD:DP:GQ:PL 0/1:11,8:19:99:165,0,295 1 152659266 rs57291980 G T 502.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.054;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=-0.398;SB=-3.100e+01;SOR=1.609;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:8,16:24:99:531,0,181 1 152659471 rs3737859 T G 1280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.491;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=1.750;HaplotypeScore=5.7362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-0.445;SB=-6.450e+02;SOR=0.925;VQSLOD=7.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,49:88:99:1309,0,953 1 152671913 rs3908717 C G 188.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.713;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=-0.196;SB=0.00;SOR=0.425;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:217,0,312 1 152681543 rs1332496 T C 1473.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;SB=-7.150e+02;SOR=1.345;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:50:99:1502,108,0 1 152681680 rs33921874 C CAGCTCTGGGGGCTGCTGT 11586.73 PASS AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.73;SB=-5.462e+03;SOR=0.796;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:69:99:11624,178,0 1 152692803 rs41268476 A C 1204.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.659;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=5.375;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.601;SB=-7.520e+02;SOR=0.337;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 0/1:43,45:88:99:1233,0,1236 1 152710165 rs11588950 G T 94.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.430;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=-1.693;SB=-2.004e+01;SOR=1.609;VQSLOD=5.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,4:10:99:123,0,145 1 152732106 rs17612167 A T 840.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.180;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.919;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.67;ReadPosRankSum=0.973;SB=-3.040e+02;SOR=0.507;VQSLOD=8.56;culprit=QD GT:AD:DP:GQ:PL 0/1:60,37:97:99:869,0,1656 1 152732436 rs4845480 G C 1535.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.413;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=-0.168;SB=-9.920e+02;SOR=0.687;VQSLOD=8.15;culprit=FS GT:AD:DP:GQ:PL 0/1:83,60:144:99:1564,0,2148 1 152733301 rs4329520 T A 2025.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.099;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=-1.223;SB=-1.286e+03;SOR=0.691;VQSLOD=8.21;culprit=FS GT:AD:DP:GQ:PL 0/1:71,77:148:99:2054,0,1839 1 152749091 rs41268480 C T 641.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=-0.192;SB=-3.760e+02;SOR=0.685;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:17,23:40:99:670,0,396 1 152759678 rs1034109 C T 386.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.966;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.455;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=-1.255;SB=-6.701e+01;SOR=0.208;VQSLOD=9.91;culprit=SOR GT:AD:DP:GQ:PL 0/1:18,14:32:99:415,0,595 1 152759950 rs11205106 A G 977.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.112;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.117;HaplotypeScore=4.2796;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=-1.138;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.56;ReadPosRankSum=-0.743;SB=-4.420e+02;SOR=0.683;VQSLOD=0.174;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,30:50:99:1006,0,535 1 152777868 rs36107483 A G 634.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=18.9835;MLEAC=1;MLEAF=0.500;MQ=58.80;MQ0=0;MQRankSum=-1.548;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=-0.845;SB=-9.200e+01;SOR=0.904;VQSLOD=3.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,29:42:99:663,0,370 1 152777964 rs17624493 G A 937.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.612;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.584;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=0.376;SB=-6.170e+02;SOR=0.372;VQSLOD=9.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,35:51:99:966,0,385 1 152778118 rs35436039 G A 263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.955;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=-0.056;SB=0.00;SOR=1.112;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:292,0,193 1 152785170 rs56056379 G A 801.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.123;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=6.106;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.06;ReadPosRankSum=0.118;SB=-4.110e+02;SOR=0.227;VQSLOD=8.52;culprit=FS GT:AD:DP:GQ:PL 0/1:21,26:47:99:830,0,583 1 152944594 rs3170863 C T 1327.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.924;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.710;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=0.727;SB=-7.100e+02;SOR=0.596;VQSLOD=9.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,52:112:99:1356,0,1660 1 152957832 rs1611762 C A 757.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.524;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=8.012;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=1.168;SB=-3.850e+02;SOR=0.167;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 0/1:29,30:59:99:786,0,911 1 152957887 rs1611764 G A 1222.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.360;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=2.967;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-1.092;SB=-5.240e+02;SOR=0.424;VQSLOD=9.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,45:91:99:1251,0,1270 1 152975495 rs2075739 G A 600.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.119;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=-0.495;SB=-2.640e+02;SOR=0.659;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 0/1:37,25:62:99:629,0,1009 1 152975763 rs1977734 C A 497.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.942;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7851;MLEAC=1;MLEAF=0.500;MQ=60.75;MQ0=0;MQRankSum=2.593;POSITIVE_TRAIN_SITE;QD=9.39;ReadPosRankSum=-0.569;SB=-1.570e+02;SOR=0.616;VQSLOD=2.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,20:53:99:526,0,1010 1 152975829 rs1970328 A G 1324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.082;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=5.632;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-0.992;SB=-4.000e+02;SOR=1.347;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 0/1:49,45:94:99:1353,0,1263 1 152975941 rs1055935 C G 1502.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.859;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=3.337;HaplotypeScore=2.6825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-0.633;SB=-8.690e+02;SOR=0.437;VQSLOD=8.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,60:124:99:1531,0,1755 1 152976108 rs1015996 C T 151.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-0.309;SB=0.00;SOR=0.693;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:180,0,211 1 152976114 rs1015995 G C 107.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=0.712;SB=0.00;SOR=0.412;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:136,0,207 1 153004652 rs1334849 G A 163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.446;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.62;ReadPosRankSum=0.677;SB=-3.500e+01;SOR=0.293;VQSLOD=9.99;culprit=QD GT:AD:DP:GQ:PL 0/1:12,7:19:99:192,0,401 1 153004721 rs1334848 A T 199.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.579;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.26;ReadPosRankSum=0.796;SB=-5.600e+01;SOR=0.606;VQSLOD=8.81;culprit=QD GT:AD:DP:GQ:PL 0/1:28,10:38:99:228,0,825 1 153004778 rs3820141 C T 389.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.439;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.35;ReadPosRankSum=-1.687;SB=-2.130e+02;SOR=0.563;VQSLOD=8.66;culprit=QD GT:AD:DP:GQ:PL 0/1:37,16:53:99:418,0,1041 1 153004809 rs3181787 T C 417.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.771;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.073;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.20;ReadPosRankSum=0.353;SB=-2.720e+02;SOR=0.520;VQSLOD=8.83;culprit=QD GT:AD:DP:GQ:PL 0/1:40,18:58:99:446,0,1072 1 153004848 rs3795381 T C 499.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.629;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.197;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.57;ReadPosRankSum=1.245;SB=-3.460e+02;SOR=0.402;VQSLOD=8.72;culprit=QD GT:AD:DP:GQ:PL 0/1:44,22:66:99:528,0,1150 1 153004853 rs3795382 C T 492.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.525;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.556;HaplotypeScore=2.3984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.58;ReadPosRankSum=1.033;SB=-3.110e+02;SOR=0.368;VQSLOD=8.58;culprit=QD GT:AD:DP:GQ:PL 0/1:43,22:65:99:521,0,1123 1 153004983 rs12195 C T 720.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.888;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.094;HaplotypeScore=2.6676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-1.559;SB=-2.600e+02;SOR=0.914;VQSLOD=7.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,26:54:99:749,0,829 1 153005156 rs2711 C T 1265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.745;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=-1.293;SB=-6.720e+02;SOR=0.841;VQSLOD=7.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,53:102:99:1294,0,1296 1 153012765 rs1846857 T C 104.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.04;MQ0=0;MQRankSum=0.492;POSITIVE_TRAIN_SITE;QD=8.06;ReadPosRankSum=-0.275;SB=-6.200e+01;SOR=1.022;VQSLOD=2.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,6:13:99:133,0,210 1 153066072 rs3737865 T C 252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.882;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.62;MQ0=0;MQRankSum=-3.092;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=-1.388;SB=-1.970e+02;SOR=0.569;VQSLOD=2.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,12:25:99:281,0,317 1 153113182 . A C 109.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.600;DP=18;Dels=0.00;ExcessHet=3.0103;FS=1.913;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.10;ReadPosRankSum=0.589;SB=-1.060e+02;SOR=0.269;VQSLOD=7.36;culprit=QD GT:AD:DP:GQ:PL 0/1:11,7:18:99:138,0,280 1 153233510 rs6661601 A G 145.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.446;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=4.752;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.57;ReadPosRankSum=-1.137;SB=-1.260e+02;SOR=0.132;VQSLOD=9.12;culprit=QD GT:AD:DP:GQ:PL 0/1:9,8:17:99:174,0,251 1 153233578 rs1143389 C T 158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.909;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-0.541;SB=-8.700e+01;SOR=0.105;VQSLOD=9.59;culprit=SOR GT:AD:DP:GQ:PL 0/1:6,6:12:99:187,0,150 1 153233701 rs1143390 A C 229.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.793;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=2.421;SB=-9.300e+01;SOR=1.288;VQSLOD=6.43;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,9:14:99:258,0,116 1 153233991 rs66779360 A ACTCTGGCGGCGG 1157.74 PASS AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;RPA=1,2;RU=CTCTGGCGGCGG;SB=-4.663e+02;SOR=0.892;STR;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,9:12:27:1195,27,0 1 153234602 rs11205255 T C 491.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.54;SB=0.00;SOR=5.283;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:520,39,0 1 153270362 rs2771110 C G 332.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.854;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=-0.718;SB=-9.732e-01;SOR=1.302;VQSLOD=8.88;culprit=FS GT:AD:DP:GQ:PL 0/1:23,11:34:99:361,0,759 1 153270857 rs2771111 T C 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.518;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.039;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=-1.995;SB=-7.697e+01;SOR=0.160;VQSLOD=9.32;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,11:18:99:295,0,231 1 153271524 rs821431 C T 652.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.954;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.448;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=-0.795;SB=-2.130e+02;SOR=0.458;VQSLOD=9.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,25:42:99:681,0,477 1 153279462 rs66966700 TAAG T 2399.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;DB;DP=67;ExcessHet=3.0103;FS=5.581;MLEAC=1;MLEAF=0.500;MQ=60.16;MQ0=0;MQRankSum=0.802;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.73;ReadPosRankSum=-0.402;SB=-8.580e+02;SOR=0.266;VQSLOD=0.261;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,42:67:99:2437,0,1392 1 153303252 rs41310915 G A 1972.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.125;DB;DP=168;Dels=0.00;ExcessHet=3.0103;FS=1.362;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=0.488;SB=-6.470e+02;SOR=0.836;VQSLOD=7.26;culprit=DP GT:AD:DP:GQ:PL 0/1:89,79:168:99:2001,0,2544 1 153410625 rs147282626 A C 806.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.418;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-0.920;SB=-4.040e+02;SOR=0.405;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:34,34:68:99:835,0,880 1 153412219 rs370388116 C T 1054.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.868;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.897;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.10;ReadPosRankSum=0.153;SB=-3.970e+02;SOR=0.519;VQSLOD=8.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,44:95:99:1083,0,1489 1 153412392 rs3006428 T G 1759.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.503;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=2.705;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=1.835;SB=-6.050e+02;SOR=1.040;VQSLOD=6.73;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:50,62:112:99:1788,0,1266 1 153431200 rs3014836 T C 782.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.604;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.731;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=59.61;MQ0=0;MQRankSum=-1.643;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=0.217;SB=-1.300e+02;SOR=0.331;VQSLOD=0.155;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,27:51:99:811,0,742 1 153431406 rs3014837 C G 3276.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.77;SB=-1.297e+03;SOR=1.681;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:3305,241,0 1 153520451 rs75928171 C T 311.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.760;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=2.043;SB=-1.765e+00;SOR=1.942;VQSLOD=5.34;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,10:19:99:340,0,269 1 153535848 . C CA 47.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;DP=23;ExcessHet=3.0103;FS=4.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.17;RPA=14,15;RU=A;ReadPosRankSum=1.943;SB=-1.204e+01;SOR=0.047;STR;VQSLOD=5.45;culprit=QD GT:AD:DP:GQ:PL 0/1:15,7:23:85:85,0,266 1 153587256 rs11548102 A T 570.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.54;SB=-2.401e+02;SOR=1.721;VQSLOD=5.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:45:599,45,0 1 153587308 rs11548104 C T 803.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.71;SB=-4.280e+02;SOR=1.179;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:60:832,60,0 1 153588208 rs9792963 G A 1242.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.59;SB=-1.175e+02;SOR=4.351;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1271,99,0 1 153588279 rs9792967 G A 3799.77 PASS AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.69;SB=-1.532e+03;SOR=1.685;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,128:128:99:3828,283,0 1 153600778 rs3806233 G A 850.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.74;SB=-2.251e+02;SOR=2.030;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:879,69,0 1 153604029 rs1046379 C T 3303.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-1.915e+03;SOR=0.853;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3332,244,0 1 153604112 rs1046381 G A 3767.77 PASS AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-1.881e+03;SOR=0.986;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,122:122:99:3796,295,0 1 153609039 rs4845557 T C 1310.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-7.190e+02;SOR=1.055;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:96:1339,96,0 1 153617773 rs11680 C G 967.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.671;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=0.827;SB=-3.470e+02;SOR=0.798;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:27,36:63:99:996,0,671 1 153635425 rs3795396 G A 1295.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.32;SB=-5.520e+02;SOR=1.209;VQSLOD=5.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:99:1324,105,0 1 153636432 rs10598064 TTAC T 372.75 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;RPA=13,12;RU=TAC;SB=0.00;SOR=4.407;STR;VQSLOD=5.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,8:10:24:410,24,0 1 153636472 . T C 576.77 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.36;SB=-2.471e+02;SOR=1.609;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:45:605,45,0 1 153636860 rs4351684 A G 4967.77 PASS AC=2;AF=1.00;AN=2;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.11;SB=-3.101e+03;SOR=0.781;VQSLOD=4.29;culprit=DP GT:AD:DP:GQ:PL 1/1:0,165:165:99:4996,364,0 1 153637617 rs3862047 G A 964.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=-2.990e+02;SOR=1.839;VQSLOD=7.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:75:993,75,0 1 153640665 rs10797096 G A 1082.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-3.540e+02;SOR=1.765;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:84:1111,84,0 1 153642835 rs6663046 G C 2489.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=-1.100e+03;SOR=1.552;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2518,181,0 1 153642909 rs11265625 A G 1629.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.95;SB=-3.880e+02;SOR=2.400;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1658,123,0 1 153656352 rs9662664 T G 551.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8279;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.49;SB=-7.997e+01;SOR=3.258;VQSLOD=7.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:580,42,0 1 153660514 rs11295572 AC A 483.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.428;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.23;RPA=7,6;RU=C;ReadPosRankSum=1.304;SB=-1.095e+02;SOR=1.292;STR;VQSLOD=8.36;culprit=FS GT:AD:DP:GQ:PL 1/1:1,15:16:32:521,32,0 1 153661374 rs34402066 CG C 4251.73 PASS AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.29;RPA=2,1;RU=G;SB=-1.092e+03;SOR=2.326;STR;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,99:100:99:4289,298,0 1 153665919 . T TC 388.73 PASS AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.10;RPA=3,4;RU=C;SB=0.00;SOR=4.977;STR;VQSLOD=8.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:12:33:426,33,0 1 153743317 rs4345834 G A 868.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.02;SB=-3.950e+02;SOR=1.609;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:66:897,66,0 1 153784666 rs11347449 CT CTT,C 400.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.120;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.73;MQ0=0;MQRankSum=0.777;POSITIVE_TRAIN_SITE;QD=11.45;RPA=18,19,17;RU=T;ReadPosRankSum=-0.142;SB=-1.470e+02;SOR=0.573;STR;VQSLOD=3.69;culprit=MQRankSum GT:AD:DP:GQ:PL 1/2:5,11,19:44:99:438,292,498,133,0,299 1 153790501 rs4363451 C T 747.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.093;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-0.201;SB=-3.360e+02;SOR=0.919;VQSLOD=10.11;culprit=FS GT:AD:DP:GQ:PL 0/1:21,30:51:99:776,0,620 1 153791165 rs147317448 AGAG A 964.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;DB;DP=39;ExcessHet=3.0103;FS=3.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.74;ReadPosRankSum=-0.949;SB=-9.200e+01;SOR=1.426;VQSLOD=4.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,17:39:99:1002,0,1351 1 153800931 rs144104082 TACACACAC T 452.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQ0=0;MQRankSum=0.180;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.25;RPA=18,14;RU=AC;ReadPosRankSum=-0.792;SB=0.00;SOR=2.584;STR;VQSLOD=0.870;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:1,6:12:60:490,0,60 1 153825208 rs4540690 A G 122.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=0.138;SB=-1.050e+02;SOR=0.446;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:151,0,141 1 153825404 rs4845576 C T 348.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.491;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=7.196;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=-1.557;SB=-2.921e+02;SOR=0.096;VQSLOD=8.65;culprit=FS GT:AD:DP:GQ:PL 0/1:7,17:24:99:377,0,192 1 153904574 rs11264620 T C 549.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.987;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.96;ReadPosRankSum=-1.440;SB=-1.640e+02;SOR=0.301;VQSLOD=9.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,20:29:99:578,0,236 1 153906397 rs11264621 A G 613.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.094;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=-0.195;SB=-3.280e+02;SOR=0.638;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:12,25:37:99:642,0,311 1 153907278 rs3835302 CCTGCTGCTG C 3587.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;DB;DP=57;ExcessHet=3.0103;FS=2.841;MLEAC=1;MLEAF=0.500;MQ=61.87;MQ0=0;MQRankSum=2.358;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.98;RPA=9,6;RU=CTG;ReadPosRankSum=0.172;SB=-8.840e+02;SOR=0.382;STR;VQSLOD=0.636;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,39:57:99:3625,0,1855 1 153909069 rs1043608 G C 1205.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.737;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=0.032;SB=-3.490e+02;SOR=0.616;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:33,42:75:99:1234,0,1052 1 153913699 rs1110165 T G 1282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.028;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=1.684;HaplotypeScore=2.7896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-0.328;SB=-5.730e+02;SOR=0.895;VQSLOD=8.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,49:95:99:1311,0,1147 1 153913770 rs2252508 A G 1369.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.158;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.721;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-1.397;SB=-7.660e+02;SOR=0.813;VQSLOD=7.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,52:107:99:1398,0,1384 1 153917369 rs6680140 C T 372.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=-1.873;SB=-1.380e+02;SOR=0.418;VQSLOD=9.89;culprit=FS GT:AD:DP:GQ:PL 0/1:11,15:26:99:401,0,298 1 153920564 rs10559 A G 340.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.925;HaplotypeScore=1.6229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=-0.762;SB=-2.657e-01;SOR=2.303;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 0/1:13,12:25:99:369,0,343 1 153921483 rs111395902 AC A 819.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.998;DB;DP=64;ExcessHet=3.0103;FS=5.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;RPA=4,3;RU=C;ReadPosRankSum=0.034;SB=-1.780e+02;SOR=1.581;STR;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 0/1:37,27:64:99:857,0,1271 1 153926078 rs11264680 T C 980.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.644;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-0.493;SB=-4.140e+02;SOR=0.732;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:37,38:76:99:1009,0,941 1 153927270 rs10908558 T C 336.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.540;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=0.154;SB=-2.160e+02;SOR=0.412;VQSLOD=9.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,14:26:99:365,0,315 1 153933359 . A G 624.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.893;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.58;ReadPosRankSum=-0.462;SB=-1.560e+02;SOR=1.429;VQSLOD=5.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,23:46:99:653,0,666 1 153941514 rs11264743 C T 2467.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;DB;DP=181;Dels=0.00;ExcessHet=3.0103;FS=6.293;HaplotypeScore=6.4076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.521;SB=-1.470e+03;SOR=0.395;VQSLOD=6.62;culprit=DP GT:AD:DP:GQ:PL 0/1:93,88:181:99:2496,0,2555 1 153954674 rs10908578 T C 756.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=0.723;SB=-4.780e+02;SOR=0.648;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 0/1:41,32:73:99:785,0,1097 1 153955263 rs200451111 G A 766.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.504;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=4.143;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.69;ReadPosRankSum=-2.225;SB=-3.890e+02;SOR=0.312;VQSLOD=7.88;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:23,33:56:99:795,0,686 1 153964396 . C CAA 2056.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;DP=89;ExcessHet=3.0103;FS=4.182;MLEAC=1;MLEAF=0.500;MQ=60.12;MQ0=0;MQRankSum=1.011;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=23.11;RPA=1,3;RU=A;ReadPosRankSum=-1.096;SB=-8.440e+02;SOR=0.355;STR;VQSLOD=0.504;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,45:89:99:2094,0,2150 1 153974621 rs6701341 C T 187.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.07;ReadPosRankSum=0.632;SB=-3.300e+01;SOR=1.402;VQSLOD=10.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,7:11:92:216,0,92 1 153994647 rs11264875 C T 955.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.133;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.875;HaplotypeScore=2.7041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=0.396;SB=-3.900e+02;SOR=0.883;VQSLOD=8.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,37:80:99:984,0,1153 1 154027381 rs3834774 AT A 130.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.097;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.69;RPA=14,13;RU=T;ReadPosRankSum=0.098;SB=-2.804e+01;SOR=0.551;STR;VQSLOD=8.15;culprit=QD GT:AD:DP:GQ:PL 0/1:7,10:23:99:168,0,107 1 154029450 rs11264964 G C 1115.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.797;HaplotypeScore=1.8519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=0.861;SB=-1.660e+02;SOR=1.317;VQSLOD=6.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,35:66:99:1144,0,836 1 154033329 rs72070929 ATAAG A 802.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.24;RPA=2,1;RU=TAAG;ReadPosRankSum=0.619;SB=-1.700e+02;SOR=0.404;STR;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 0/1:19,14:34:99:840,0,1234 1 154061855 rs2066135 T G 2261.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=-9.310e+02;SOR=1.708;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2290,163,0 1 154091017 rs6661101 G C 71.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.52;ReadPosRankSum=-0.369;SB=-3.300e+01;SOR=0.693;VQSLOD=9.25;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:12:99:100,0,218 1 154108387 rs3001361 G A 1619.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.42;SB=-8.870e+02;SOR=1.140;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1648,120,0 1 154110733 rs11318139 GA G 639.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;RPA=11,10;RU=A;ReadPosRankSum=-2.432;SB=-2.480e+02;SOR=0.738;STR;VQSLOD=8.27;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:26,32:66:99:677,0,584 1 154112167 . A C 379.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=-0.309;QD=22.34;ReadPosRankSum=1.512;SB=-7.697e+01;SOR=0.776;VQSLOD=2.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,14:17:76:408,0,76 1 154141908 rs4845364 A G 1212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=3.798;HaplotypeScore=7.4924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=0.274;SB=-4.490e+02;SOR=1.287;VQSLOD=6.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,46:69:99:1241,0,555 1 154186918 rs12408458 G C 1322.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.794;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=1.629;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=0.596;SB=-7.260e+02;SOR=0.509;VQSLOD=9.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,49:102:99:1351,0,1461 1 154192143 rs9803862 G A 927.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.224;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=-0.419;SB=-1.350e+02;SOR=0.717;VQSLOD=9.10;culprit=FS GT:AD:DP:GQ:PL 0/1:38,32:70:99:956,0,1183 1 154192463 . G GT 159.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQ0=0;MQRankSum=1.187;POSITIVE_TRAIN_SITE;QD=7.26;RPA=10,11;RU=T;ReadPosRankSum=0.826;SB=-1.943e+00;SOR=1.473;STR;VQSLOD=3.02;culprit=QD GT:AD:DP:GQ:PL 0/1:12,10:30:99:197,0,225 1 154199543 rs4845365 T C 423.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.39;SB=-4.176e+01;SOR=3.611;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:452,33,0 1 154208877 rs3762339 A G 358.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.544;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.183;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=0.000;SB=-8.197e+01;SOR=0.105;VQSLOD=9.04;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,12:22:99:387,0,314 1 154218550 rs11301778 CT C 199.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.27;RPA=4,3;RU=T;ReadPosRankSum=-0.187;SB=-2.801e+01;SOR=1.022;STR;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:237,0,171 1 154218639 rs4040743 TTCAG T 1214.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;DB;DP=41;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.78;ReadPosRankSum=-1.312;SB=-4.520e+02;SOR=1.140;VQSLOD=5.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,20:41:99:1252,0,1338 1 154223323 . C CA 130.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.36;MQ0=0;MQRankSum=0.296;QD=6.54;RPA=20,21;RU=A;ReadPosRankSum=0.965;SB=0.00;SOR=1.127;STR;VQSLOD=1.82;culprit=QD GT:AD:DP:GQ:PL 0/1:8,12:23:58:168,0,58 1 154227239 rs1194604 C A 882.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.251;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6814;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=0.902;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=-0.282;SB=-2.100e+02;SOR=0.612;VQSLOD=4.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,32:57:99:911,0,684 1 154228287 rs1194603 T C 462.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.086;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.71;ReadPosRankSum=0.753;SB=-2.880e+02;SOR=0.631;VQSLOD=8.67;culprit=QD GT:AD:DP:GQ:PL 0/1:37,23:60:99:491,0,963 1 154243457 rs12354278 A T 904.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=3.081;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.780;SB=-5.210e+02;SOR=0.384;VQSLOD=9.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,39:80:99:933,0,994 1 154245512 rs1194593 A G 104.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=8.751;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=0.000;SB=-5.500e+01;SOR=0.020;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:133,0,202 1 154245917 rs13796 T C 1051.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.968;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=1.166;SB=-5.830e+02;SOR=0.746;VQSLOD=8.65;culprit=FS GT:AD:DP:GQ:PL 0/1:48,37:85:99:1080,0,1331 1 154285052 rs11265530 G A 259.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.439;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.0799;MLEAC=1;MLEAF=0.500;MQ=57.08;MQ0=0;MQRankSum=-2.121;POSITIVE_TRAIN_SITE;QD=9.28;ReadPosRankSum=-0.369;SB=-9.700e+01;SOR=0.839;VQSLOD=1.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,13:29:99:288,0,449 1 154293675 rs6668968 G A 1306.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.863;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=6.546;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-1.576;SB=-8.350e+02;SOR=0.307;VQSLOD=7.94;culprit=FS GT:AD:DP:GQ:PL 0/1:46,53:99:99:1335,0,1218 1 154294656 rs1194607 T C 1114.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.489;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=3.473;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=0.862;SB=-5.010e+02;SOR=0.373;VQSLOD=10.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,41:73:99:1143,0,821 1 154295592 rs6685323 C T 2635.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.512;DB;DP=171;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=0.647;SB=-1.154e+03;SOR=0.722;VQSLOD=7.60;culprit=DP GT:AD:DP:GQ:PL 0/1:73,98:171:99:2664,0,1916 1 154303705 rs12727865 C T 157.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.256;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=-0.625;SB=-9.732e-01;SOR=2.303;VQSLOD=5.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,6:15:99:186,0,271 1 154303976 rs6702754 T C 1452.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.534;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=1.529;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=0.325;SB=-5.010e+02;SOR=0.885;VQSLOD=7.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:70,54:124:99:1481,0,1923 1 154305010 rs1209264 A G 516.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.45;SB=0.00;SOR=4.047;VQSLOD=7.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:545,42,0 1 154305190 rs12077870 G C 723.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.197;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.28;ReadPosRankSum=-0.136;SB=-5.180e+02;SOR=0.652;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 0/1:43,35:78:99:752,0,1153 1 154310048 rs1760795 C G 925.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.916;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=0.485;SB=-6.080e+02;SOR=0.651;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 0/1:45,36:83:99:954,0,1179 1 154310223 . G GA 436.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;DP=43;ExcessHet=3.0103;FS=3.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;RPA=9,10;RU=A;ReadPosRankSum=0.570;SB=-1.490e+02;SOR=0.252;STR;VQSLOD=9.96;culprit=SOR GT:AD:DP:GQ:PL 0/1:18,20:43:99:474,0,376 1 154313232 rs1194588 T C 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.015;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=0.752;SB=-3.876e+01;SOR=0.283;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:247,0,191 1 154317153 rs1194587 C T 2318.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.724;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=7.311;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=1.872;SB=-1.292e+03;SOR=0.654;VQSLOD=3.84;culprit=FS GT:AD:DP:GQ:PL 0/1:64,85:149:99:2347,0,1598 1 154317281 rs9660850 G A 1763.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.173;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=1.401;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=-0.136;SB=-1.097e+03;SOR=0.549;VQSLOD=9.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,69:128:99:1792,0,1647 1 154317418 rs1194586 T C 993.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.791;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=1.779;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-0.368;SB=-4.840e+02;SOR=0.678;VQSLOD=7.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,36:86:99:1022,0,1498 1 154318172 rs1979575 A G 1026.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.408;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=4.078;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.11;ReadPosRankSum=-0.408;SB=-3.050e+02;SOR=1.402;VQSLOD=6.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,36:60:99:1055,0,593 1 154321072 rs1194591 A G 2198.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.36;SB=-5.300e+02;SOR=2.376;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2227,166,0 1 154351199 rs34437053 G A 393.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.61;MQ0=0;MQRankSum=-0.859;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=1.314;SB=-1.700e+02;SOR=0.914;VQSLOD=3.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,15:28:99:422,0,416 1 154351247 rs57100877 C G 407.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.484;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=-0.748;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-0.657;SB=-2.080e+02;SOR=1.179;VQSLOD=0.092;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,18:30:99:436,0,341 1 154351277 rs60767732 G T 386.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.394;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.455;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;MQRankSum=-0.832;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=-0.285;SB=-2.150e+02;SOR=0.845;VQSLOD=0.103;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,16:29:99:415,0,318 1 154351304 rs60682501 A G 382.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.455;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=-0.933;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=0.104;SB=-1.790e+02;SOR=1.041;VQSLOD=0.058;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,15:30:99:411,0,449 1 154351323 rs60412881 T C 496.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.260;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=-0.874;SB=-2.270e+02;SOR=0.859;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:14,18:32:99:525,0,389 1 154401972 rs6694817 T C 1263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.452;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=4.707;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=1.226;SB=-3.010e+02;SOR=1.624;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 0/1:49,42:91:99:1292,0,1176 1 154407419 rs7518199 A C 186.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=0.405;SB=0.00;SOR=1.085;VQSLOD=10.26;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:215,0,120 1 154407713 rs7521458 T C 187.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.341;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=1.432;SB=-3.200e+01;SOR=1.179;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:216,0,302 1 154408340 rs4845371 T C 197.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.997;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-0.562;SB=-3.377e+01;SOR=0.141;VQSLOD=10.28;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,7:15:99:226,0,264 1 154409893 . A AT 123.76 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DP=11;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.38;RPA=13,14;RU=T;ReadPosRankSum=-0.370;SB=-7.900e+01;SOR=0.105;STR;VQSLOD=8.34;culprit=SOR GT:AD:DP:GQ:PL 0/1:2,8:11:22:161,0,22 1 154417415 . G C 64.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.244;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=3.5159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.98;ReadPosRankSum=3.361;SB=-9.732e-01;SOR=2.030;VQSLOD=2.53;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:8,5:13:93:93,0,194 1 154420402 rs7512646 G C 256.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=0.882;SB=0.00;SOR=0.976;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:285,0,185 1 154426970 rs2228145 A C 192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.347;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.18;ReadPosRankSum=-0.599;SB=-1.380e+02;SOR=0.892;VQSLOD=9.98;culprit=QD GT:AD:DP:GQ:PL 0/1:11,10:21:99:221,0,252 1 154437896 rs2229238 T C 1366.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.06;SB=-2.750e+02;SOR=2.833;VQSLOD=7.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1395,102,0 1 154442960 rs11265621 G A 1947.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.78;SB=-3.040e+02;SOR=3.422;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1976,144,0 1 154459197 rs4845633 C G 1223.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=-5.520e+02;SOR=1.270;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:93:1252,93,0 1 154473660 rs6700296 T C 790.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.82;SB=-7.797e+01;SOR=3.912;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:819,60,0 1 154473726 rs6683078 G A 1514.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=-3.800e+02;SOR=2.511;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1543,114,0 1 154474131 rs4845635 C G 1235.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.74;SB=-5.360e+02;SOR=1.455;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:90:1264,90,0 1 154479657 rs35092505 C CAT 2644.73 PASS AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.71;SB=-8.510e+02;SOR=1.863;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:2682,144,0 1 154479670 rs6664608 C T 1690.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=-7.000e+02;SOR=1.567;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1719,126,0 1 154492702 rs10908842 G A 2229.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.79;SB=-6.400e+02;SOR=2.372;VQSLOD=5.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2258,175,0 1 154493721 rs6684225 T C 886.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.34;SB=-1.115e+02;SOR=3.528;VQSLOD=5.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:66:915,66,0 1 154514331 rs4845647 C A 966.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=-2.840e+02;SOR=2.303;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:75:995,75,0 1 154516571 rs6678164 T C 2654.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-1.191e+03;SOR=1.477;VQSLOD=7.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2683,193,0 1 154523215 rs4520411 C T 1186.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.07;SB=-2.630e+02;SOR=2.774;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:93:1215,93,0 1 154523588 rs10908849 T G 1166.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.28;SB=-9.951e+01;SOR=4.112;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:90:1195,90,0 1 154528086 rs4078519 T C 3157.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-1.177e+03;SOR=1.832;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:3186,250,0 1 154559036 rs6683149 G C 426.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.61;SB=0.00;SOR=5.136;VQSLOD=7.24;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,12:12:36:455,36,0 1 154561261 rs9427095 G C 1908.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=-1.020e+03;SOR=1.057;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1937,138,0 1 154561925 rs1127309 C T 1028.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.021;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-1.518;SB=-6.140e+02;SOR=0.793;VQSLOD=8.62;culprit=FS GT:AD:DP:GQ:PL 0/1:37,39:76:99:1057,0,1032 1 154571174 rs4045821 T TGGA 557.74 PASS AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;RPA=1,2;RU=GGA;SB=0.00;SOR=4.804;STR;VQSLOD=8.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:13:30:595,30,0 1 154573419 rs3738032 C T 1025.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.590;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.82;ReadPosRankSum=0.314;SB=-8.097e+01;SOR=0.409;VQSLOD=8.72;culprit=FS GT:AD:DP:GQ:PL 0/1:14,33:48:99:1054,0,435 1 154573967 rs2229857 T C 2083.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.561;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=1.274;HaplotypeScore=3.9858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-0.004;SB=-1.203e+03;SOR=0.883;VQSLOD=7.85;culprit=DP GT:AD:DP:GQ:PL 0/1:73,83:156:99:2112,0,1800 1 154574820 rs1466731 T C 4586.77 PASS AC=2;AF=1.00;AN=2;DB;DP=161;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.49;SB=-2.775e+03;SOR=0.866;VQSLOD=5.50;culprit=DP GT:AD:DP:GQ:PL 1/1:0,161:161:99:4615,346,0 1 154575040 rs1802645 C T 3183.76 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-1.790e+03;SOR=0.946;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3212,238,0 1 154580348 rs67062815 G GAC 1697.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DB;DP=91;ExcessHet=3.0103;FS=7.558;MLEAC=1;MLEAF=0.500;MQ=60.12;MQ0=0;MQRankSum=1.011;POSITIVE_TRAIN_SITE;QD=19.08;RPA=8,9;RU=AC;ReadPosRankSum=-0.345;SB=-4.120e+02;SOR=1.508;STR;VQSLOD=0.385;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,45:91:99:1735,0,1555 1 154600372 rs6426859 A G 762.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.25;SB=-3.630e+02;SOR=1.528;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:57:791,57,0 1 154600533 rs28411375 A G 883.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.589;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3766;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=1.240;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=-2.604;SB=-6.470e+02;SOR=0.798;VQSLOD=2.02;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:28,41:69:99:912,0,647 1 154709682 rs35539682 TG T 262.27 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.84;RPA=11,10;RU=G;ReadPosRankSum=-0.635;SB=-1.481e+02;SOR=0.223;STR;VQSLOD=8.25;culprit=FS GT:AD:DP:GQ:PL 0/1:1,10:16:1:297,0,1 1 154744141 rs56995760 G A 250.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.054;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=1.314;SB=-3.301e+01;SOR=1.445;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:279,0,162 1 154744807 rs1051614 C G 2380.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.391;DB;DP=196;Dels=0.00;ExcessHet=3.0103;FS=0.540;HaplotypeScore=2.9986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=-0.028;SB=-1.147e+03;SOR=0.756;VQSLOD=7.39;culprit=DP GT:AD:DP:GQ:PL 0/1:104,92:196:99:2409,0,2864 1 154744852 rs1131820 A G 1863.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.189;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=8.412;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-0.754;SB=-4.610e+02;SOR=1.400;VQSLOD=4.46;culprit=FS GT:AD:DP:GQ:PL 0/1:75,67:142:99:1892,0,2166 1 154744937 rs11589471 C T 552.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.895;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-1.509;SB=-9.600e+01;SOR=0.787;VQSLOD=8.15;culprit=FS GT:AD:DP:GQ:PL 0/1:27,23:50:99:581,0,895 1 154745031 rs11584403 T G 414.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.56;SB=-4.176e+01;SOR=3.611;VQSLOD=7.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:443,33,0 1 154832290 rs1061122 C T 1857.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.332;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=-0.348;SB=-9.580e+02;SOR=0.653;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:39,73:112:99:1886,0,975 1 154832304 rs4845397 T C 895.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.680;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.78;ReadPosRankSum=0.407;SB=-4.590e+02;SOR=0.708;VQSLOD=8.66;culprit=QD GT:AD:DP:GQ:PL 0/1:65,37:102:99:924,0,1681 1 154832322 rs1218586 A C 2765.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.39;SB=-1.353e+03;SOR=1.389;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:2794,199,0 1 154917701 rs906594 A G 1870.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.17;SB=-9.510e+02;SOR=1.057;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1899,138,0 1 154919080 rs2061690 C T 1168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.190;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-1.455;SB=-7.340e+02;SOR=0.662;VQSLOD=9.34;culprit=FS GT:AD:DP:GQ:PL 0/1:37,47:85:99:1197,0,1034 1 154941593 rs4845401 C G 106.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.341;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-1.321;SB=-7.300e+01;SOR=0.250;VQSLOD=9.40;culprit=SOR GT:AD:DP:GQ:PL 0/1:5,5:10:99:135,0,136 1 154948327 rs12087657 G T 559.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=0.521;SB=-6.900e+01;SOR=0.976;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:15,19:34:99:588,0,496 1 154983539 rs6686021 C T 297.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.506;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=0.319;SB=-3.500e+01;SOR=0.540;VQSLOD=10.35;culprit=FS GT:AD:DP:GQ:PL 0/1:13,11:24:99:326,0,399 1 154987526 rs11264295 C T 1334.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.066;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=1.520;HaplotypeScore=3.4742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-1.224;SB=-6.610e+02;SOR=0.934;VQSLOD=7.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,53:115:99:1363,0,1600 1 154988957 rs2242195 A G 1522.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.241;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=1.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.095;SB=-5.070e+02;SOR=0.914;VQSLOD=7.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,51:106:99:1551,0,1424 1 154995503 rs2242193 G A 278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.760;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=1.201;SB=-1.410e+02;SOR=0.343;VQSLOD=9.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,11:23:99:307,0,353 1 154996815 rs112745976 G A 315.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.669;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.54;ReadPosRankSum=-0.091;SB=-3.300e+01;SOR=1.244;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:344,0,177 1 155001929 rs10908452 T C 808.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.834;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=5.382;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-2.051;SB=-4.030e+02;SOR=0.259;VQSLOD=9.31;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:35,33:68:99:837,0,949 1 155006091 rs10908453 A G 1628.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.277;DB;DP=160;Dels=0.00;ExcessHet=3.0103;FS=2.807;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=0.347;SB=-1.066e+03;SOR=0.506;VQSLOD=7.54;culprit=DP GT:AD:DP:GQ:PL 0/1:94,66:160:99:1657,0,2340 1 155006450 rs74520550 C A 470.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.81;ReadPosRankSum=1.092;SB=-1.720e+02;SOR=0.804;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 0/1:12,16:29:99:499,0,307 1 155006451 rs76306191 C G 480.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2851;MLEAC=1;MLEAF=0.500;MQ=59.84;MQ0=0;MQRankSum=-0.807;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=1.361;SB=-2.090e+02;SOR=0.836;VQSLOD=3.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,17:30:99:509,0,310 1 155006999 rs6680600 C T 952.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.010;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=6.034;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-0.407;SB=-5.910e+02;SOR=0.479;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 0/1:34,40:74:99:981,0,1008 1 155007293 rs4845404 C T 335.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.233;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.291;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-0.491;SB=-2.801e+01;SOR=1.911;VQSLOD=6.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,12:24:99:364,0,324 1 155007302 rs4845405 C A 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.901;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.000;SB=-3.100e+01;SOR=1.314;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:11,11:22:99:315,0,301 1 155014426 rs55668940 G A 436.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.782;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-2.543;SB=-2.601e+01;SOR=0.368;VQSLOD=8.84;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:24,16:40:99:465,0,859 1 155019710 rs11264300 A C 719.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.540;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.981;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=1.112;SB=-4.290e+02;SOR=0.551;VQSLOD=9.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,29:61:99:748,0,840 1 155021893 . A AT 145.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.228;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.62;RPA=15,16;RU=T;ReadPosRankSum=-0.759;SB=-2.236e+01;SOR=0.527;STR;VQSLOD=9.28;culprit=QD GT:AD:DP:GQ:PL 0/1:12,10:36:99:183,0,211 1 155026114 rs6660884 C T 1095.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.85;SB=-7.997e+01;SOR=4.615;VQSLOD=4.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:87:1124,87,0 1 155026942 rs6427128 A C 561.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.039;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=0.033;SB=-3.390e+02;SOR=0.507;VQSLOD=9.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,23:56:99:590,0,900 1 155028522 rs11264302 G A 1975.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.229;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=24.1752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=1.459;SB=-1.152e+03;SOR=0.746;VQSLOD=8.60;culprit=FS GT:AD:DP:GQ:PL 0/1:73,79:153:99:2004,0,1705 1 155030557 rs11264303 A C 2669.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.627;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.463;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=0.151;SB=-1.687e+03;SOR=0.653;VQSLOD=5.90;culprit=DP GT:AD:DP:GQ:PL 0/1:140,110:250:99:2698,0,3824 1 155033308 rs11589479 G A 1200.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=5.544;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=2.329;SB=-4.970e+02;SOR=0.330;VQSLOD=8.07;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:58,44:102:99:1229,0,1619 1 155033317 rs11264304 T C 1289.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.415;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=2.968;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=-2.113;SB=-4.280e+02;SOR=1.036;VQSLOD=6.88;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:44,51:95:99:1318,0,1205 1 155106054 rs4390169 A G 4333.77 PASS AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=-2.249e+03;SOR=0.971;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,144:144:99:4362,328,0 1 155106227 rs4745 A T 2979.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-1.679e+03;SOR=0.845;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:3008,226,0 1 155108663 . A AG 781.73 PASS AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.68;RPA=5,6;RU=G;SB=0.00;SOR=6.273;STR;VQSLOD=8.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:23:66:819,66,0 1 155161833 rs147687610 C G 329.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.698;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=0.133;SB=-6.100e+01;SOR=0.999;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:17,12:29:99:358,0,485 1 155202611 . TGGA T 1605.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;DP=79;ExcessHet=3.0103;FS=9.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.59;RPA=2,1;RU=GGA;ReadPosRankSum=2.125;SB=-6.010e+02;SOR=1.045;STR;VQSLOD=3.85;culprit=FS GT:AD:DP:GQ:PL 0/1:47,31:79:99:1643,0,2628 1 155205669 rs28559737 G T 5658.77 PASS AC=2;AF=1.00;AN=2;DB;DP=174;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4775;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-2.499e+03;SOR=1.365;VQSLOD=5.63;culprit=DP GT:AD:DP:GQ:PL 1/1:0,174:174:99:5687,430,0 1 155208647 rs7416991 T C 795.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.16;SB=-3.876e+01;SOR=4.977;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:69:824,69,0 1 155294274 rs914616 A G 393.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;SB=-2.461e+02;SOR=0.836;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:422,30,0 1 155294772 rs4971075 A G 1492.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.72;SB=-7.310e+02;SOR=1.055;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1521,111,0 1 155313047 rs4971051 T C 688.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-8.097e+01;SOR=3.611;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:717,54,0 1 155403370 rs184363090 G A 790.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.902;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=2.427;SB=-4.720e+02;SOR=0.524;VQSLOD=8.53;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:41,34:75:99:819,0,1090 1 155408635 rs4971053 T C 3380.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.405;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5798;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.92;ReadPosRankSum=1.365;SB=-1.869e+03;SOR=0.365;VQSLOD=5.54;culprit=FS GT:AD:DP:GQ:PL 1/1:1,112:114:99:3409,225,0 1 155532316 rs12403379 T C 617.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-3.150e+02;SOR=0.892;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:48:646,48,0 1 155532325 rs12403380 T C 685.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.29;SB=-3.530e+02;SOR=0.892;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:714,54,0 1 155532332 rs34869594 T C 674.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.74;SB=-3.650e+02;SOR=0.693;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:703,54,0 1 155532341 rs61812107 T C 622.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.60;SB=-3.190e+02;SOR=0.914;VQSLOD=5.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:48:651,48,0 1 155618415 rs5777949 CT C 3423.73 PASS AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;RPA=4,3;RU=T;SB=-1.704e+03;SOR=0.713;STR;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,99:100:99:3461,298,0 1 155631307 rs371838915 AACAC A,AAC 723.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.13;RPA=17,15,16;RU=AC;SB=-1.208e+02;SOR=3.383;STR;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/2:0,7,10:26:99:761,377,374,278,0,227 1 155691191 . GTA G 149.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.52;RPA=9,8;RU=TA;ReadPosRankSum=-1.797;SB=-1.764e+00;SOR=1.609;STR;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:187,0,279 1 155722506 rs12134456 C G 1627.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.30;SB=-2.391e+02;SOR=3.564;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1656,120,0 1 155737425 rs71591911 AACAC A 1045.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;MQRankSum=1.621;POSITIVE_TRAIN_SITE;QD=27.94;RPA=14,12;RU=AC;ReadPosRankSum=0.694;SB=-2.403e+02;SOR=1.270;STR;VQSLOD=3.16;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,19:25:55:1083,55,0 1 155746340 rs60525991 CT C 732.74 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.005;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;MQRankSum=0.396;POSITIVE_TRAIN_SITE;QD=19.80;RPA=12,11;RU=T;ReadPosRankSum=0.863;SB=-1.880e+02;SOR=0.569;STR;VQSLOD=3.78;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:3,34:54:30:770,30,0 1 155753676 rs822019 A G 431.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.21;SB=-1.593e+02;SOR=1.609;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:460,33,0 1 155754117 rs822020 G A 1145.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5147;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-2.690e+02;SOR=2.303;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:35:90:1174,90,0 1 155755097 rs822021 G A 1109.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.81;SB=-6.280e+02;SOR=1.179;VQSLOD=5.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:44:81:1138,81,0 1 155774599 rs822016 T C 518.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=0.00;SOR=5.549;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:547,42,0 1 155783763 rs822012 C T 582.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.14;SB=-2.291e+02;SOR=1.721;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:45:611,45,0 1 155785578 rs148569012 CAACT C 6708.73 PASS AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.55;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-2.496e+03;SOR=1.298;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:6746,295,0 1 155822971 rs822490 C T 881.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.07;SB=0.00;SOR=6.358;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:910,69,0 1 155823002 rs822491 T C 1155.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-2.381e+02;SOR=2.899;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:87:1184,87,0 1 155829360 rs1749412 C A 896.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=38.53;SB=-4.276e+01;SOR=5.058;VQSLOD=5.47;culprit=QD GT:AD:DP:GQ:PL 1/1:0,25:25:72:925,72,0 1 155837865 rs822522 G C 2280.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-1.210e+03;SOR=1.042;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2309,169,0 1 155838267 rs822521 T C 4871.77 PASS AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.63;SB=-2.229e+03;SOR=1.157;VQSLOD=7.12;culprit=DP GT:AD:DP:GQ:PL 1/1:0,154:154:99:4900,367,0 1 155850558 rs822508 T C 591.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.18;SB=-1.971e+02;SOR=2.200;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:48:620,48,0 1 155850811 rs822509 G A 558.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.97;SB=0.00;SOR=5.549;VQSLOD=7.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:587,45,0 1 155870416 rs1749409 G A 3512.77 PASS AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-1.970e+03;SOR=0.844;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,112:112:99:3541,259,0 1 155880573 rs493446 C G 3887.77 PASS AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SB=-1.985e+03;SOR=1.270;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,128:128:99:3916,286,0 1 155880760 rs33913852 C CA 1119.73 PASS AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.32;SB=-2.551e+02;SOR=2.494;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:26:72:1157,72,0 1 155891045 rs625658 A C 789.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=-1.245e+02;SOR=3.352;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:818,60,0 1 155891877 rs33993745 C CAG 840.73 PASS AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.16;RPA=1,2;RU=AG;SB=0.00;SOR=5.784;STR;VQSLOD=7.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:19:51:878,51,0 1 155899020 rs539602 A T 931.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-4.090e+02;SOR=1.402;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:72:960,72,0 1 155903310 rs4661150 T C 349.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-6.997e+01;SOR=2.494;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:378,27,0 1 155903408 rs4661151 C T 1273.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.62;SB=-5.880e+02;SOR=1.455;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:93:1302,93,0 1 155904177 rs2275079 T C 2818.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.37;ReadPosRankSum=0.418;SB=-1.683e+03;SOR=1.081;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:2,101:103:99:2847,166,0 1 155904392 rs2275081 G A 664.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-3.377e+01;SOR=4.514;VQSLOD=8.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:693,54,0 1 155912486 rs2152051 T C 5329.77 PASS AC=2;AF=1.00;AN=2;DB;DP=187;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.50;SB=-3.150e+03;SOR=1.107;VQSLOD=5.32;culprit=DP GT:AD:DP:GQ:PL 1/1:0,187:187:99:5358,397,0 1 155917880 rs1010033 T A 5126.77 PASS AC=2;AF=1.00;AN=2;DB;DP=175;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7187;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.30;SB=-2.174e+03;SOR=1.650;VQSLOD=5.32;culprit=DP GT:AD:DP:GQ:PL 1/1:0,175:175:99:5155,388,0 1 155928232 rs2364404 T C 1041.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.76;SB=-2.790e+02;SOR=2.649;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:84:1070,84,0 1 155928242 rs2886069 C T 1129.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.23;SB=-2.151e+02;SOR=2.899;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:87:1158,87,0 1 155931368 rs4661175 G A 1182.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-3.200e+02;SOR=2.613;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:90:1211,90,0 1 155955076 rs4661216 A G 2583.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-9.460e+02;SOR=1.730;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2612,190,0 1 155981489 rs1475766 C G 384.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.462;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=9.304;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=1.353;SB=-2.901e+01;SOR=3.180;VQSLOD=5.59;culprit=FS GT:AD:DP:GQ:PL 0/1:7,12:19:99:413,0,163 1 156011444 rs2297792 T C 278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.551;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=1.952;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=1.532;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=0.844;SB=-2.170e+02;SOR=0.307;VQSLOD=0.637;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,12:18:99:307,0,128 1 156099726 rs372247860 C T 71.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.18;ReadPosRankSum=0.405;SB=-2.501e+01;SOR=0.892;VQSLOD=7.89;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:99:100,0,171 1 156104479 . G A 335.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.581;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.481;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.61;ReadPosRankSum=-2.455;SB=-1.190e+02;SOR=0.418;VQSLOD=7.13;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:24,15:39:99:364,0,810 1 156107534 HIFD_LMNA C T 98.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.58;ReadPosRankSum=-0.919;SB=-5.200e+01;SOR=1.022;VQSLOD=9.41;culprit=QD GT:AD:DP:GQ:PL 0/1:10,5:15:99:127,0,285 1 156133038 rs7555253 T C 551.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.721;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=1.513;SB=-2.970e+02;SOR=0.807;VQSLOD=8.72;culprit=FS GT:AD:DP:GQ:PL 0/1:24,21:45:99:580,0,699 1 156144971 rs2075164 G A 1609.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.237;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=3.355;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-0.747;SB=-8.630e+02;SOR=0.454;VQSLOD=9.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,64:123:99:1638,0,1474 1 156146218 rs12401573 C T 602.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.035;HaplotypeScore=3.4525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.27;ReadPosRankSum=0.652;SB=-2.600e+02;SOR=0.471;VQSLOD=9.67;culprit=QD GT:AD:DP:GQ:PL 0/1:42,23:65:99:631,0,1143 1 156186275 rs1065147 A C 761.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-3.590e+02;SOR=1.179;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:790,57,0 1 156186279 rs61813337 T C 733.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.90;SB=-3.310e+02;SOR=1.179;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:762,57,0 1 156186287 rs1065149 T C 782.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.62;SB=-3.620e+02;SOR=1.051;VQSLOD=4.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:811,60,0 1 156186327 rs4119257 T C 894.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.41;SB=-3.690e+02;SOR=1.220;VQSLOD=5.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:69:923,69,0 1 156186349 rs1062299 T C 707.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.70;SB=-3.300e+02;SOR=0.990;VQSLOD=3.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:57:736,57,0 1 156186369 rs11264459 A T 623.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.12;SB=-3.330e+02;SOR=0.776;VQSLOD=4.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:25:51:652,51,0 1 156186461 rs1062302 T C 905.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.40;SB=-3.590e+02;SOR=1.270;VQSLOD=5.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:69:934,69,0 1 156186465 rs1062303 C G 845.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.83;SB=-2.950e+02;SOR=1.358;VQSLOD=4.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:66:874,66,0 1 156186522 rs4119260 A G 747.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.91;SB=-3.310e+02;SOR=1.136;VQSLOD=5.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:57:776,57,0 1 156186563 rs4119261 T G 413.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.83;SB=-1.473e+02;SOR=1.609;VQSLOD=5.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:442,33,0 1 156186596 rs1923544 A G 345.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.81;SB=-1.195e+02;SOR=1.981;VQSLOD=4.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:374,27,0 1 156186604 rs4998248 A G 337.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.15;SB=-1.055e+02;SOR=1.981;VQSLOD=5.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:366,27,0 1 156186606 rs4998249 G A 328.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.89;SB=-7.097e+01;SOR=2.494;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:357,27,0 1 156186615 rs7534434 A G 303.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-8.097e+01;SOR=2.303;VQSLOD=5.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:332,24,0 1 156202173 rs1052053 A G 1574.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=3.162;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-0.361;SB=-1.003e+03;SOR=0.838;VQSLOD=7.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,65:131:99:1603,0,1670 1 156206121 rs1052067 G A 2750.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.162;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.472;HaplotypeScore=2.7993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=-0.350;SB=-1.476e+03;SOR=0.764;VQSLOD=5.29;culprit=DP GT:AD:DP:GQ:PL 0/1:136,114:250:99:2779,0,3807 1 156215899 rs2075165 G A 936.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.377;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=0.266;SB=-3.580e+02;SOR=0.612;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:45,36:81:99:965,0,1186 1 156220056 rs1043165 T C 876.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.677;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=-0.786;SB=-3.470e+02;SOR=0.925;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:33,35:68:99:905,0,834 1 156223056 rs75854315 G A 195.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-0.061;SB=0.00;SOR=0.693;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:15:99:224,0,201 1 156230141 rs2287025 T A 628.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=8.377;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-1.576;SB=-1.460e+02;SOR=1.877;VQSLOD=5.44;culprit=FS GT:AD:DP:GQ:PL 0/1:27,24:51:99:657,0,635 1 156230206 rs2287024 C A 755.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.175;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=0.330;SB=-5.090e+02;SOR=0.752;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:31,32:63:99:784,0,869 1 156230605 rs7533548 C G 368.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=-1.214;SB=-3.400e+01;SOR=1.911;VQSLOD=5.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,12:17:99:397,0,158 1 156231266 rs759328 G C 1160.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.588;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.498;HaplotypeScore=4.4565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=0.834;SB=-4.300e+02;SOR=0.371;VQSLOD=9.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,41:79:99:1189,0,1092 1 156233479 rs4661036 T C 461.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.872;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=2.208;SB=-6.700e+01;SOR=0.746;VQSLOD=9.52;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:21,16:37:99:490,0,630 1 156236592 rs370875877 CT C 494.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.88;MQ0=0;MQRankSum=1.627;QD=11.24;RPA=16,15;RU=T;ReadPosRankSum=-0.429;SB=-4.897e+01;SOR=0.347;STR;VQSLOD=1.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,30:61:99:532,0,174 1 156236674 . T C 223.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQ0=0;MQRankSum=0.502;QD=17.21;ReadPosRankSum=0.071;SB=0.00;SOR=1.179;VQSLOD=2.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,8:13:99:252,0,151 1 156246728 rs2277872 T G 128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.303;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.15;ReadPosRankSum=0.740;SB=0.00;SOR=0.169;VQSLOD=9.51;culprit=QD GT:AD:DP:GQ:PL 0/1:13,5:18:99:157,0,393 1 156247665 rs114416960 C T 592.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.558;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=0.387;SB=-2.380e+02;SOR=0.818;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:16,24:40:99:621,0,436 1 156247907 rs2248273 C T 148.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.052;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.30;ReadPosRankSum=-0.488;SB=-1.765e+00;SOR=1.863;VQSLOD=8.20;culprit=FS GT:AD:DP:GQ:PL 0/1:10,6:16:99:177,0,280 1 156255833 rs2842883 G C 482.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.17;SB=-4.276e+01;SOR=3.767;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:511,39,0 1 156261491 rs3795728 G C 913.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.573;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-0.414;SB=-2.670e+02;SOR=0.818;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:31,34:65:99:942,0,812 1 156278968 rs2230196 T G 630.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.163;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.11;ReadPosRankSum=-2.865;SB=-1.050e+02;SOR=0.487;VQSLOD=8.88;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:12,21:33:99:659,0,344 1 156279210 rs3001784 T C 1351.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.79;SB=-3.150e+02;SOR=2.670;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1380,105,0 1 156280296 rs72414608 GATAA G 512.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;DB;DP=22;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=60.98;MQ0=0;MQRankSum=1.515;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.48;RPA=3,2;RU=ATAA;ReadPosRankSum=1.020;SB=-7.597e+01;SOR=0.074;STR;VQSLOD=0.418;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,11:22:99:550,0,618 1 156287360 rs2249790 C T 714.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.590;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=7.254;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=-1.874;SB=-2.103e+01;SOR=2.557;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 0/1:24,23:47:99:743,0,666 1 156287403 rs2296374 T C 366.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.633;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.57;ReadPosRankSum=0.101;SB=0.00;SOR=1.371;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:6,11:17:99:395,0,176 1 156290656 rs11548200 T C 897.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-0.725;SB=-4.390e+02;SOR=0.711;VQSLOD=8.97;culprit=FS GT:AD:DP:GQ:PL 0/1:34,37:71:99:926,0,795 1 156303527 rs2764402 C T 272.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.640;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=1.319;SB=-3.000e+01;SOR=0.846;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:14,10:24:99:301,0,376 1 156304782 rs3762281 A G 544.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.179;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=-0.035;SB=-1.340e+02;SOR=0.385;VQSLOD=10.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,19:34:99:573,0,466 1 156339378 . C CT 637.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.78;RPA=3,4;RU=T;ReadPosRankSum=-0.269;SB=0.00;SOR=1.179;STR;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:15,23:47:99:675,0,393 1 156347309 rs56353055 A G 282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.12;ReadPosRankSum=0.740;SB=-9.732e-01;SOR=1.314;VQSLOD=8.50;culprit=FS GT:AD:DP:GQ:PL 0/1:21,10:31:99:311,0,661 1 156347834 rs11586833 T A 370.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=0.521;SB=-2.290e+02;SOR=0.693;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:13,18:31:99:399,0,293 1 156351792 rs3748568 G A 1163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=2.932;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=-1.266;SB=-6.900e+02;SOR=0.521;VQSLOD=8.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,46:85:99:1192,0,1091 1 156354367 rs6668857 A G 671.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.073;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=-0.038;SB=-2.260e+02;SOR=0.789;VQSLOD=10.31;culprit=FS GT:AD:DP:GQ:PL 0/1:17,25:42:99:700,0,445 1 156374256 rs3431 C T 1142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.092;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.934;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=1.060;SB=-4.040e+02;SOR=0.569;VQSLOD=9.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,41:79:99:1171,0,1001 1 156439000 rs1109751 T C 818.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=0.00;SOR=6.184;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:847,63,0 1 156450719 rs1185700 G A 1149.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.74;SB=-6.670e+02;SOR=1.022;VQSLOD=7.04;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,40:40:84:1178,84,0 1 156496188 rs6427315 A G 2252.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;SB=-5.890e+02;SOR=2.483;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2281,166,0 1 156503541 rs6699212 T C 638.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;SB=-7.597e+01;SOR=3.611;VQSLOD=6.63;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,19:19:51:667,51,0 1 156509552 rs1171570 C G 1673.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=-7.310e+02;SOR=1.270;VQSLOD=4.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1702,123,0 1 156510806 rs74327053 C T 279.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.908;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=0.380;SB=-3.200e+01;SOR=0.914;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:9,11:20:99:308,0,285 1 156520173 rs1778819 T A 1869.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.33;SB=-1.176e+03;SOR=0.818;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:1898,138,0 1 156526234 rs2489139 C T 1400.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-4.600e+02;SOR=2.059;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1429,105,0 1 156526387 rs11264498 C G 1626.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.89;SB=-7.090e+02;SOR=1.426;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1655,120,0 1 156526444 rs2488269 T C 1321.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-3.840e+02;SOR=2.303;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1350,99,0 1 156531474 rs1171544 A G 680.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-2.441e+02;SOR=1.931;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:51:709,51,0 1 156531871 rs1171545 A G 1281.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.393;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.48;ReadPosRankSum=1.233;SB=-5.643e+02;SOR=1.326;VQSLOD=5.62;culprit=FS GT:AD:DP:GQ:PL 1/1:1,44:45:62:1310,62,0 1 156532252 rs1778827 C T 369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.73;SB=0.00;SOR=4.804;VQSLOD=8.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:398,30,0 1 156532344 rs7548309 T G 1728.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-5.700e+02;SOR=2.221;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1757,129,0 1 156532908 rs16837492 C A 2062.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=-9.340e+02;SOR=1.230;VQSLOD=7.23;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,67:68:99:2091,157,0 1 156532977 rs1171547 T C 2291.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.76;SB=-1.549e+03;SOR=0.719;VQSLOD=5.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2320,166,0 1 156534525 rs4661184 A C 1282.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.67;SB=-2.041e+02;SOR=3.442;VQSLOD=7.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:96:1311,96,0 1 156534539 rs4661185 G A 1011.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.73;SB=-7.697e+01;SOR=4.548;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:84:1040,84,0 1 156536123 rs2066378 T C 690.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.79;SB=-6.497e+01;SOR=3.500;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:719,54,0 1 156536133 rs4382715 A G 911.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-7.297e+01;SOR=4.003;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:940,69,0 1 156536221 rs2066377 G C 2103.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.39;SB=-5.110e+02;SOR=2.494;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2132,157,0 1 156536251 rs947662 T C 2709.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;SB=-1.218e+03;SOR=1.504;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2738,199,0 1 156536353 rs947663 A G 3636.77 PASS AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-2.190e+03;SOR=0.963;VQSLOD=4.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,123:124:99:3665,259,0 1 156536480 rs947664 T C 1106.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-3.190e+02;SOR=2.303;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:81:1135,81,0 1 156539019 rs11332475 CA C 395.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.153;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.83;RPA=12,11;RU=A;ReadPosRankSum=-1.187;SB=-5.597e+01;SOR=2.200;STR;VQSLOD=7.97;culprit=FS GT:AD:DP:GQ:PL 1/1:1,18:19:36:433,36,0 1 156539154 rs6427319 T C 2671.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-1.114e+03;SOR=1.402;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2700,202,0 1 156551848 rs6682716 A G 925.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.92;SB=-3.880e+02;SOR=1.460;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:75:954,75,0 1 156556321 rs10796961 G A 1662.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-7.590e+02;SOR=1.402;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1691,123,0 1 156561651 rs7516274 G C 954.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-2.850e+02;SOR=2.303;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:72:983,72,0 1 156562008 rs1925949 G A 1626.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-5.500e+02;SOR=1.791;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1655,120,0 1 156562143 rs942959 G A 837.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.91;SB=-1.911e+02;SOR=2.494;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:69:866,69,0 1 156563375 rs6427321 G A 3993.77 PASS AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-2.447e+03;SOR=0.756;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,130:130:99:4022,295,0 1 156563726 rs6427322 A C 2934.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-1.713e+03;SOR=0.829;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,92:92:99:2963,211,0 1 156563813 rs6668178 G A 1631.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.0447;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.13;SB=-6.190e+02;SOR=1.733;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1660,120,0 1 156563852 rs942963 C T 1152.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.90;SB=-1.501e+02;SOR=3.258;VQSLOD=5.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:36:90:1181,90,0 1 156563898 rs1270 T C 762.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.19;SB=-4.276e+01;SOR=4.712;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:791,60,0 1 156564640 rs3795732 G A 493.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=-1.125e+02;SOR=2.584;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:39:522,39,0 1 156564922 rs3795733 C T 1351.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.16;SB=-8.110e+02;SOR=0.776;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1380,102,0 1 156565049 rs10637036 A AAC 2086.73 PASS AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-1.009e+03;SOR=0.741;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:42:99:2124,123,0 1 156567496 rs879461 C T 1016.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.80;SB=-2.201e+02;SOR=2.694;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:78:1045,78,0 1 156594656 rs12567958 C A 491.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;SB=-7.397e+01;SOR=3.126;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:520,39,0 1 156617968 rs2277873 G A 1420.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.574;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.895;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.340;SB=-4.410e+02;SOR=0.567;VQSLOD=9.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,52:97:99:1449,0,1254 1 156618768 rs4661209 T G 302.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.599;SB=-4.176e+01;SOR=0.223;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:10,11:21:99:331,0,327 1 156622252 rs1056695 G A 1275.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.920;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=-0.846;SB=-5.820e+02;SOR=0.821;VQSLOD=8.52;culprit=FS GT:AD:DP:GQ:PL 0/1:40,49:89:99:1304,0,1178 1 156626920 rs7524611 T C 3346.77 PASS AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6221;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.66;SB=-1.728e+03;SOR=1.387;VQSLOD=4.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,121:121:99:3375,253,0 1 156628717 rs951964 C A 304.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=5.649;HaplotypeScore=1.9926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=0.724;SB=-1.540e+02;SOR=0.976;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 0/1:16,13:29:99:333,0,452 1 156629037 rs11360 A G 289.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.701;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.606;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=0.697;SB=-1.400e+02;SOR=0.392;VQSLOD=9.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,12:28:99:318,0,410 1 156639753 rs11582300 G A 248.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.696;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.29;ReadPosRankSum=-0.385;SB=-7.600e+01;SOR=1.296;VQSLOD=6.88;culprit=QD GT:AD:DP:GQ:PL 0/1:21,9:30:99:277,0,629 1 156640156 rs3748570 G A 503.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.030;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.264;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-1.150;SB=-2.170e+02;SOR=1.140;VQSLOD=7.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,20:40:99:532,0,593 1 156640678 rs2886443 G A 219.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=0.000;SB=-4.800e+01;SOR=1.402;VQSLOD=6.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,8:20:99:248,0,396 1 156641537 rs951781 C T 955.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=8.046;HaplotypeScore=2.9149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=-0.098;SB=-4.080e+02;SOR=1.163;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 0/1:34,37:72:99:984,0,914 1 156646668 rs4278369 A G 742.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-3.320e+02;SOR=1.179;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:771,57,0 1 156670545 rs4661213 C T 889.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-3.990e+02;SOR=0.859;VQSLOD=4.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:72:918,72,0 1 156696603 rs35890195 G A 795.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.908;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=3.603;HaplotypeScore=1.8662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=-1.013;SB=-1.670e+02;SOR=0.260;VQSLOD=9.78;culprit=SOR GT:AD:DP:GQ:PL 0/1:23,28:51:99:824,0,645 1 156705593 rs4311877 G C 4244.77 PASS AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.21;SB=-2.233e+03;SOR=1.105;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,136:136:99:4273,304,0 1 156706259 rs12036794 C T 324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.105;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.30;ReadPosRankSum=-0.054;SB=0.00;SOR=1.244;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:6,10:16:99:353,0,188 1 156706285 rs3934562 T G 437.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.662;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=1.734;SB=-4.276e+01;SOR=0.399;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 0/1:9,14:23:99:466,0,290 1 156706559 rs8658 A C,G 2255.77 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-8.750e+02;SOR=1.739;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/2:0,44,30:74:99:2284,893,785,1391,0,1322 1 156707697 rs11581044 G A 772.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=-0.408;SB=-3.420e+02;SOR=0.836;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:24,26:50:99:801,0,758 1 156707775 rs6670122 T G 3074.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.00;SB=-8.430e+02;SOR=2.330;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:3103,226,0 1 156708244 rs28697076 C G,T 3986.77 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;SB=-2.390e+03;SOR=0.797;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 1/2:0,91,48:139:99:4015,1399,1195,2615,0,2504 1 156713512 rs4437869 C T 1027.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-4.880e+02;SOR=1.112;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:33:78:1056,78,0 1 156737969 rs11264542 C T 1135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.543;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=3.202;HaplotypeScore=2.5975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.23;ReadPosRankSum=-0.968;SB=-7.210e+02;SOR=0.457;VQSLOD=7.97;culprit=QD GT:AD:DP:GQ:PL 0/1:87,51:138:99:1164,0,2264 1 156752048 rs2274503 C G 1385.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.48;SB=-7.430e+02;SOR=1.132;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1414,102,0 1 156760887 rs11264554 C A 871.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.076;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=5.705;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=0.302;SB=-3.420e+02;SOR=1.334;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 0/1:55,33:88:99:900,0,1344 1 156784186 rs34887185 C A 729.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.443;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=-0.524;SB=-1.300e+02;SOR=0.709;VQSLOD=9.00;culprit=FS GT:AD:DP:GQ:PL 0/1:30,25:55:99:758,0,920 1 156784982 rs926103 T C 1157.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-6.910e+02;SOR=0.804;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:84:1186,84,0 1 156785356 rs2150906 T C 613.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.10;SB=-3.876e+01;SOR=4.407;VQSLOD=8.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:48:642,48,0 1 156785617 rs1800601 G A 2860.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=-1.702e+03;SOR=0.829;VQSLOD=7.35;culprit=DP GT:AD:DP:GQ:PL 1/1:0,92:92:99:2889,211,0 1 156785762 rs11325907 AG A 4033.73 PASS AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.11;SB=-1.803e+03;SOR=0.979;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:88:99:4071,256,0 1 156785771 rs7546838 A G 2765.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-1.469e+03;SOR=1.039;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2794,214,0 1 156785779 rs1800600 G A 2917.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.33;SB=-1.300e+03;SOR=1.039;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2946,226,0 1 156786574 rs12738727 T A 746.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.745;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=3.202;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=-0.294;SB=-4.990e+02;SOR=0.379;VQSLOD=9.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,33:75:99:775,0,1080 1 156786575 rs12753240 C A 742.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.766;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=3.120;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=-0.475;SB=-5.090e+02;SOR=0.412;VQSLOD=9.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,34:76:99:771,0,1119 1 156814027 rs56252149 G A 1601.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.721;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=5.571;HaplotypeScore=4.2846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.552;SB=-8.860e+02;SOR=0.749;VQSLOD=4.28;culprit=FS GT:AD:DP:GQ:PL 0/1:61,60:121:99:1630,0,1602 1 156814478 rs41267423 G A 1215.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.038;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=6.669;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-0.076;SB=-6.700e+02;SOR=0.610;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 0/1:48,46:94:99:1244,0,1420 1 156818647 rs11590051 T C 2661.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-8.390e+02;SOR=2.093;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:87:99:2690,199,0 1 156819302 . T G 44.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DP=17;Dels=0.00;ExcessHet=3.0103;FS=9.901;HaplotypeScore=15.6927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-0.377;SB=-6.829e-02;SOR=3.611;VQSLOD=2.99;culprit=QD GT:AD:DP:GQ:PL 0/1:12,5:17:73:73,0,188 1 156834304 rs1800877 G A 460.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.911;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=7.368;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=2.330;SB=-9.732e-01;SOR=3.056;VQSLOD=4.96;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:11,14:25:99:489,0,322 1 156845492 rs72420829 A AGTGT 488.73 PASS AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.32;RPA=18,20;RU=GT;SB=-6.609e+00;SOR=3.442;STR;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:26:32:526,32,0 1 156848995 IPNMDB_536 C T 2869.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.76;SB=-7.530e+02;SOR=2.503;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2898,217,0 1 156875092 rs4661074 G A 2255.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.69;SB=-6.440e+02;SOR=2.406;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2284,172,0 1 156875097 rs4661075 G A 2320.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-6.650e+02;SOR=2.271;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2349,178,0 1 156875107 rs2644590 C A 917.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.600;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=1.011;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-0.500;SB=-3.150e+02;SOR=0.490;VQSLOD=9.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,37:77:99:946,0,1226 1 156875985 rs2644593 G A 2183.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6520;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SB=-7.660e+02;SOR=1.911;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2212,166,0 1 156877457 rs1952294 T C 2184.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-1.134e+03;SOR=1.117;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2213,163,0 1 156883546 rs12137505 A G 1127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.800;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-0.065;SB=-7.020e+02;SOR=0.544;VQSLOD=9.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,44:90:99:1156,0,1204 1 156884365 rs749256 T C 1156.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.75;SB=-1.851e+02;SOR=3.056;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:87:1185,87,0 1 156890854 rs41273223 C G 151.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.137;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=1.189;SB=-7.400e+01;SOR=0.368;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:180,0,211 1 156894006 rs822438 C G 188.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.16;ReadPosRankSum=-0.723;SB=-3.400e+01;SOR=1.402;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:90:217,0,90 1 156907081 rs945508 T C 1082.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=1.716;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=1.641;SB=-5.910e+02;SOR=0.948;VQSLOD=7.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,44:91:99:1111,0,1263 1 156907115 rs868188 T C 979.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.640;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=1.829;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=0.539;SB=-4.500e+02;SOR=1.045;VQSLOD=7.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,38:85:99:1008,0,1469 1 156914240 rs5778015 CCATT C 3020.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQ0=0;MQRankSum=1.009;POSITIVE_TRAIN_SITE;QD=20.78;RPA=8,7;RU=CATT;ReadPosRankSum=1.864;SB=-1.476e+03;SOR=0.729;STR;VQSLOD=1.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,55:134:99:3058,0,3114 1 156933613 rs1336150 G T 282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=-0.579;SB=0.00;SOR=1.329;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:311,0,155 1 156939175 rs1336149 C T 699.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.672;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.960;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=1.085;SB=-4.690e+02;SOR=0.560;VQSLOD=9.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,32:62:99:728,0,754 1 157043172 rs143287666 G GGCA 557.74 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.38;RPA=3,4;RU=GCA;SB=-2.931e+02;SOR=0.693;STR;VQSLOD=4.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:595,30,0 1 157043732 rs56389633 A G 1438.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-8.790e+02;SOR=0.735;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1467,105,0 1 157043989 rs140355077 CCG C 885.73 PASS AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.25;SB=-3.920e+02;SOR=0.941;VQSLOD=5.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:923,48,0 1 157095470 rs2231856 A G 7791.77 PASS AC=2;AF=1.00;AN=2;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.29;SB=-4.618e+03;SOR=0.875;VQSLOD=5.25;culprit=DP GT:AD:DP:GQ:PL 1/1:0,249:250:99:7820,590,0 1 157485561 rs3811035 G A 2160.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.1897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=-1.118e+03;SOR=0.725;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:65:99:2189,171,0 1 157485720 rs1002967 T C 411.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.31;SB=0.00;SOR=5.136;VQSLOD=8.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:440,36,0 1 157490886 rs74661163 C T 1183.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.984;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=0.165;SB=-5.530e+02;SOR=0.670;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:51,45:96:99:1212,0,1384 1 157491173 rs6427383 T A 1300.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-3.060e+02;SOR=2.726;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1329,102,0 1 157497263 rs3761961 T C 1908.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.22;SB=-3.690e+02;SOR=3.056;VQSLOD=5.34;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,53:53:99:1937,141,0 1 157508801 rs1972239 C T 387.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=0.00;SOR=4.977;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:416,33,0 1 157508882 rs6427384 C T 1082.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.97;SB=-3.976e+01;SOR=5.421;VQSLOD=3.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:87:1111,87,0 1 157509025 rs2012199 C T 2497.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.46;SB=-1.476e+03;SOR=0.846;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2526,187,0 1 157514097 rs6679793 A G 3836.77 PASS AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.45;SB=-1.891e+03;SOR=1.329;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,126:126:99:3865,277,0 1 157548669 rs1885561 T A 485.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.43;ReadPosRankSum=0.312;SB=-4.176e+01;SOR=0.495;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:9,16:25:99:514,0,259 1 157550066 rs10489673 T C 1267.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=3.419;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=0.911;SB=-7.130e+02;SOR=0.419;VQSLOD=9.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,54:117:99:1296,0,1716 1 157557701 rs2777962 G A 572.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.784;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.968;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=2.916;SB=-2.720e+02;SOR=0.339;VQSLOD=9.10;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:17,23:40:99:601,0,448 1 157557957 rs11799853 T C 901.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.050;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=7.973;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=-0.346;SB=-4.250e+02;SOR=0.168;VQSLOD=7.60;culprit=FS GT:AD:DP:GQ:PL 0/1:31,36:67:99:930,0,870 1 157559076 rs78796764 G A 1058.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.804;HaplotypeScore=4.5313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-1.363;SB=-4.760e+02;SOR=0.883;VQSLOD=7.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,46:93:99:1087,0,1172 1 157566211 rs12744410 A G 419.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.150;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.33;ReadPosRankSum=0.046;SB=-2.670e+02;SOR=0.507;VQSLOD=8.55;culprit=QD GT:AD:DP:GQ:PL 0/1:24,21:45:99:448,0,631 1 157567751 rs1361889 A G 2996.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.30;SB=-1.034e+03;SOR=1.916;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:3025,223,0 1 157599858 rs2777997 C T 267.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.028;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=5.167;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=0.101;SB=-1.720e+02;SOR=0.387;VQSLOD=5.31;culprit=FS GT:AD:DP:GQ:PL 0/1:6,11:17:99:296,0,158 1 157599917 rs2758629 A G 265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.077;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-0.453;SB=-1.730e+02;SOR=0.543;VQSLOD=5.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,11:17:99:294,0,162 1 157599937 rs2777998 T A 193.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-0.228;SB=-1.380e+02;SOR=0.418;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:222,0,135 1 157599988 rs2758628 T C 152.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.781;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.155;SB=-3.100e+01;SOR=1.445;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:181,0,137 1 157606002 rs2758697 G A 291.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.618;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.84;ReadPosRankSum=0.281;SB=-1.730e+02;SOR=0.175;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 0/1:21,12:33:99:320,0,666 1 157606013 rs2758696 G A 328.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.746;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.920;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.65;ReadPosRankSum=0.045;SB=-2.040e+02;SOR=0.330;VQSLOD=9.14;culprit=QD GT:AD:DP:GQ:PL 0/1:24,14:38:99:357,0,664 1 157606064 rs2758695 C T 372.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.850;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=-1.071;SB=-2.520e+02;SOR=0.616;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:23,16:39:99:401,0,630 1 157606294 rs2248138 T A 406.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.324;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.969;SB=-1.280e+02;SOR=0.776;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:15,16:31:99:435,0,376 1 157651017 rs1806798 T C 822.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.327;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=1.744;SB=-2.402e+01;SOR=0.422;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 0/1:23,26:49:99:851,0,728 1 157652929 rs141977401 TA T 336.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;DB;DP=39;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.86;RPA=9,8;RU=A;ReadPosRankSum=0.410;SB=-1.180e+02;SOR=0.386;STR;VQSLOD=8.00;culprit=QD GT:AD:DP:GQ:PL 0/1:20,18:39:99:374,0,480 1 157666256 rs72708359 T C 542.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.283;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.515;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.38;ReadPosRankSum=-0.372;SB=-3.200e+01;SOR=1.751;VQSLOD=5.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,16:28:99:571,0,318 1 157668390 rs7522061 T C 974.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.667;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-0.697;SB=-5.070e+02;SOR=0.758;VQSLOD=8.73;culprit=FS GT:AD:DP:GQ:PL 0/1:46,40:87:99:1003,0,1278 1 157669580 rs58517866 T A 898.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.979;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-0.509;SB=-5.080e+02;SOR=0.587;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:31,36:67:99:927,0,731 1 157670290 rs945635 C G 719.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.368;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-1.955;SB=-4.510e+02;SOR=0.623;VQSLOD=4.63;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:35,30:65:99:748,0,768 1 157680114 . T C 265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.157;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.98;ReadPosRankSum=1.241;SB=-6.200e+01;SOR=1.609;VQSLOD=4.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,9:14:92:294,0,92 1 157680273 rs72708379 T C 717.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.186;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=1.144;SB=-4.080e+02;SOR=0.922;VQSLOD=6.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,27:43:99:746,0,306 1 157718231 rs72221192 C CAAAT 1914.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;DB;DP=42;ExcessHet=3.0103;FS=3.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.84;RPA=9,10;RU=AAAT;ReadPosRankSum=1.028;SB=-3.010e+02;SOR=2.331;STR;VQSLOD=4.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,37:42:42:1952,0,42 1 157718283 rs6696643 A T 2341.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;SB=-7.970e+02;SOR=1.936;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2370,178,0 1 157740186 rs10540465 GTC G 267.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;DB;DP=23;ExcessHet=3.0103;FS=7.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=1.201;SB=-2.302e+01;SOR=2.568;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 0/1:15,7:23:99:305,0,834 1 157740189 rs57139984 A G 154.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=7.829;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.03;ReadPosRankSum=1.377;SB=-1.321e+01;SOR=2.568;VQSLOD=3.94;culprit=QD GT:AD:DP:GQ:PL 0/1:15,7:22:99:183,0,469 1 157744142 rs6700883 A T 755.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.154;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=-0.718;SB=-3.470e+02;SOR=0.719;VQSLOD=8.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,30:70:99:784,0,1061 1 157768000 rs3811024 G C 481.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.672;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.182;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=-0.203;SB=-1.710e+02;SOR=1.061;VQSLOD=7.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,22:47:99:510,0,748 1 157771880 rs4971154 C T 1895.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=0.569;HaplotypeScore=5.3202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-0.626;SB=-1.100e+03;SOR=0.642;VQSLOD=7.23;culprit=DP GT:AD:DP:GQ:PL 0/1:95,73:170:99:1924,0,2667 1 157801578 rs1048086 T A 188.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-1.944;SB=-1.765e+00;SOR=1.828;VQSLOD=7.84;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,7:14:99:217,0,195 1 157802979 rs2261295 C T 2480.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-1.212e+03;SOR=1.040;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:79:99:2509,190,0 1 157805650 rs11537583 A T 1176.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.415;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=6.655;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-1.193;SB=-5.500e+02;SOR=1.239;VQSLOD=5.34;culprit=FS GT:AD:DP:GQ:PL 0/1:50,45:95:99:1205,0,1280 1 157806006 rs2765503 G A 2500.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.79;SB=-1.264e+03;SOR=1.230;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2529,184,0 1 157809267 rs2297410 G A 841.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.758;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.858;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=-1.365;SB=-4.110e+02;SOR=0.902;VQSLOD=7.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,40:78:99:870,0,1053 1 157811392 rs2260040 G A 1454.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.06;SB=-6.060e+02;SOR=1.508;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1483,111,0 1 157811585 rs2281870 G T 306.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.934;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.435;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.48;ReadPosRankSum=-0.336;SB=-8.200e+01;SOR=1.061;VQSLOD=6.85;culprit=QD GT:AD:DP:GQ:PL 0/1:28,13:41:99:335,0,705 1 158045749 rs11264900 A G 656.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-2.391e+02;SOR=1.721;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:51:685,51,0 1 158054379 rs927662 A G 1121.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.079;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=1.241;HaplotypeScore=3.5968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-1.144;SB=-1.880e+02;SOR=0.465;VQSLOD=9.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,40:83:99:1150,0,1320 1 158056213 rs67978907 A AACAC 593.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.90;RPA=13,15;RU=AC;ReadPosRankSum=0.720;SB=0.00;SOR=0.460;STR;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:16,12:32:99:631,0,800 1 158056299 rs7367384 C G 1305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.532;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=2.814;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=1.187;SB=-5.950e+02;SOR=0.418;VQSLOD=8.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,54:107:99:1334,0,1447 1 158056651 rs7364493 A G 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.92;ReadPosRankSum=0.569;SB=0.00;SOR=0.941;VQSLOD=10.21;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:315,0,212 1 158057633 rs36008419 C G 1000.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=5.496;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-0.045;SB=-5.820e+02;SOR=0.283;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 0/1:49,41:90:99:1029,0,1372 1 158057691 rs3820676 A C 876.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.880;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.542;SB=-4.850e+02;SOR=0.568;VQSLOD=9.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,34:73:99:905,0,1209 1 158146946 rs3021477 T C 1422.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-8.750e+02;SOR=0.829;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1451,105,0 1 158153996 rs426336 T C 1268.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.51;SB=-4.330e+02;SOR=2.147;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:93:1297,93,0 1 158224575 . CTGTGTGTG CTG,C 1059.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.94;RPA=24,21,20;RU=TG;SB=-2.630e+02;SOR=2.147;STR;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/2:0,7,6:29:99:1097,224,185,283,0,394 1 158389208 . G GA 240.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.909;DP=24;ExcessHet=3.0103;FS=3.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;RPA=8,9;RU=A;ReadPosRankSum=-0.331;SB=-6.197e+01;SOR=0.129;STR;VQSLOD=9.39;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,11:24:99:278,0,165 1 158389693 rs77441663 C T 115.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.09;ReadPosRankSum=-0.088;SB=-3.201e+01;SOR=0.193;VQSLOD=8.66;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:144,0,440 1 158390252 rs12239443 T G 1176.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.686;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=1.419;SB=-6.470e+02;SOR=0.784;VQSLOD=7.79;culprit=FS GT:AD:DP:GQ:PL 0/1:44,44:88:99:1205,0,1186 1 158390501 rs34616883 G A 1246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.534;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=8.005;HaplotypeScore=4.4730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-0.649;SB=-6.830e+02;SOR=0.418;VQSLOD=5.31;culprit=FS GT:AD:DP:GQ:PL 0/1:52,48:100:99:1275,0,1395 1 158390834 rs10489830 C A 520.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.449;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=3.958;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.83;ReadPosRankSum=-1.687;SB=-1.260e+02;SOR=1.338;VQSLOD=6.66;culprit=QD GT:AD:DP:GQ:PL 0/1:36,23:59:99:549,0,975 1 158424637 rs1844787 A C 454.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-2.221e+02;SOR=0.976;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:483,36,0 1 158425115 rs112207689 C T 486.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.864;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=4.732;HaplotypeScore=2.7215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=0.865;SB=-1.440e+02;SOR=1.685;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 0/1:23,20:43:99:515,0,615 1 158435250 rs1002599 C T 699.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.081;HaplotypeScore=5.2640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-0.417;SB=-2.130e+02;SOR=0.902;VQSLOD=7.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,28:62:99:728,0,935 1 158435278 rs1573519 G A 2238.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-7.860e+02;SOR=1.917;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2267,166,0 1 158435928 rs41273489 G A 1105.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.835;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=2.083;SB=-6.800e+02;SOR=0.704;VQSLOD=8.12;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:48,42:90:99:1134,0,1175 1 158436299 rs4657080 T C 1875.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.31;SB=-8.480e+02;SOR=1.503;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:1904,135,0 1 158436354 rs67123344 AT A 521.73 PASS AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.09;RPA=8,7;RU=T;SB=0.00;SOR=6.091;STR;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:26:60:559,60,0 1 158450192 rs61741711 C T 1456.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.882;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.668;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=-0.463;SB=-6.660e+02;SOR=0.807;VQSLOD=7.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:77,56:133:99:1485,0,2070 1 158450314 rs6679056 A G 2331.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.28;SB=-1.408e+03;SOR=0.772;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2360,172,0 1 158450382 rs1418843 C T 1251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.208;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=-0.347;SB=-7.460e+02;SOR=0.737;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:34,45:79:99:1280,0,901 1 158493830 rs76881706 G C 296.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.787;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=0.306;SB=-2.801e+01;SOR=0.724;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:17,11:28:99:325,0,571 1 158493852 rs7514968 A T 930.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.27;SB=-5.150e+02;SOR=1.609;VQSLOD=3.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:41:72:959,72,0 1 158493890 rs7525362 G C 1558.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SB=-7.750e+02;SOR=1.220;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1587,114,0 1 158495001 rs6663277 A T 821.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.68;SB=-5.800e+02;SOR=0.818;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:60:850,60,0 1 158495431 rs6674656 G A 600.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.31;SB=-3.860e+02;SOR=0.874;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:45:629,45,0 1 158507157 rs2051665 A T 1204.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;SB=-4.180e+02;SOR=2.093;VQSLOD=5.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:93:1233,93,0 1 158507160 rs2051666 T G 1254.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.18;SB=-4.950e+02;SOR=1.775;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:93:1283,93,0 1 158507184 rs2051068 A G 610.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.048;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-0.650;SB=-3.020e+02;SOR=0.811;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:25,27:52:99:639,0,689 1 158507222 rs5778082 GA G 1524.73 PASS AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.72;RPA=8,7;RU=A;SB=-6.670e+02;SOR=1.061;STR;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:58:99:1562,165,0 1 158507360 rs77684327 G C 442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.185;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.830;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-0.512;SB=-6.300e+01;SOR=1.828;VQSLOD=5.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,17:35:99:471,0,443 1 158507398 rs2051067 G T 473.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-8.097e+01;SOR=3.126;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:502,39,0 1 158517142 rs41273491 C T 2117.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=-0.322;SB=-1.184e+03;SOR=0.736;VQSLOD=8.69;culprit=FS GT:AD:DP:GQ:PL 0/1:64,76:140:99:2146,0,1783 1 158517353 rs16840314 G A 1490.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.664;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=6.192;HaplotypeScore=5.5734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=-0.467;SB=-8.800e+02;SOR=0.368;VQSLOD=7.84;culprit=FS GT:AD:DP:GQ:PL 0/1:82,63:145:99:1519,0,2325 1 158532405 rs7526514 T G 225.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.37;ReadPosRankSum=0.001;SB=-4.276e+01;SOR=0.368;VQSLOD=8.99;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:254,0,160 1 158533140 rs12080815 A G 874.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.975;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.925;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.439;SB=-4.180e+02;SOR=0.999;VQSLOD=7.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,34:76:99:903,0,1109 1 158533224 rs12081915 A G 541.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.274;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.422;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-2.133;SB=-2.920e+02;SOR=0.245;VQSLOD=9.70;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:27,18:45:99:570,0,767 1 158549264 rs863360 G A 968.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.978;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=0.787;SB=-5.200e+02;SOR=0.590;VQSLOD=9.95;culprit=FS GT:AD:DP:GQ:PL 0/1:35,35:71:99:997,0,1003 1 158549420 rs863361 C T 947.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.650;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=0.552;SB=-4.280e+02;SOR=0.777;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 0/1:38,35:73:99:976,0,1041 1 158549421 rs77690058 G A 988.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.989;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-0.646;SB=-5.470e+02;SOR=0.616;VQSLOD=9.34;culprit=FS GT:AD:DP:GQ:PL 0/1:35,38:73:99:1017,0,952 1 158549492 rs863362 C T 885.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.329;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=-0.420;SB=-5.250e+02;SOR=0.407;VQSLOD=10.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,31:55:99:914,0,694 1 158549511 rs863363 A G 755.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.714;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=1.030;SB=-4.450e+02;SOR=0.564;VQSLOD=10.01;culprit=FS GT:AD:DP:GQ:PL 0/1:27,27:54:99:784,0,801 1 158577109 rs857685 A C 1563.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.249;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.704;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=0.112;SB=-7.370e+02;SOR=0.975;VQSLOD=7.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,59:121:99:1592,0,1675 1 158580887 rs3768535 T C 279.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.269;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-1.063;SB=-1.766e+00;SOR=1.609;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:10,9:19:99:308,0,300 1 158580921 rs66981873 GCA G 396.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.36;MQ0=0;MQRankSum=1.843;POSITIVE_TRAIN_SITE;QD=14.17;RPA=17,16;RU=CA;ReadPosRankSum=-0.023;SB=-8.000e+01;SOR=1.051;STR;VQSLOD=3.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,14:31:99:434,0,392 1 158582426 rs2518489 G A 124.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.293;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.80;ReadPosRankSum=-0.794;SB=0.00;SOR=0.223;VQSLOD=9.34;culprit=QD GT:AD:DP:GQ:PL 0/1:11,5:16:99:153,0,321 1 158582543 rs2251963 G A 686.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.860;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=5.374;HaplotypeScore=4.4944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=-2.149;SB=-1.570e+02;SOR=1.463;VQSLOD=5.61;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:43,26:69:99:715,0,1192 1 158582552 rs2251964 G A 702.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.536;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=6.870;HaplotypeScore=3.4526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=-1.084;SB=-1.650e+02;SOR=1.581;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 0/1:50,27:77:99:731,0,1369 1 158582646 rs2251969 T C 2982.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.83;SB=-1.791e+03;SOR=0.733;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:101:99:3011,226,0 1 158584091 rs952094 A G 414.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.92;SB=-2.590e+02;SOR=0.941;VQSLOD=5.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:33:443,33,0 1 158585230 rs2518491 C T 1137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=8.304;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=-1.148;SB=-6.900e+02;SOR=0.235;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 0/1:59,47:106:99:1166,0,1676 1 158585355 rs2852634 T C 429.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=0.411;SB=-2.801e+01;SOR=1.609;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 0/1:7,14:21:99:458,0,183 1 158587390 rs857716 C T 1423.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-5.340e+02;SOR=1.765;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1452,108,0 1 158587784 rs857717 T G 694.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-1.961e+02;SOR=2.303;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:51:723,51,0 1 158587858 rs28525570 G A 337.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.542;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.870;HaplotypeScore=1.8188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=0.062;SB=-1.370e+02;SOR=0.574;VQSLOD=4.96;culprit=QD GT:AD:DP:GQ:PL 0/1:22,15:37:99:366,0,666 1 158588916 rs7553252 C G 319.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=-0.944;SB=-9.900e+01;SOR=0.481;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:16,13:29:99:348,0,505 1 158592935 rs3753068 G A 1630.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.161;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=1.396;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-0.913;SB=-7.000e+02;SOR=0.883;VQSLOD=7.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:78,60:138:99:1659,0,2040 1 158595824 rs56954229 T C 849.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.466;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=8.255;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=-1.047;SB=-2.520e+02;SOR=0.113;VQSLOD=7.51;culprit=FS GT:AD:DP:GQ:PL 0/1:27,30:57:99:878,0,840 1 158595842 rs11265038 C A 930.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.035;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=5.870;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-0.646;SB=-4.230e+02;SOR=0.222;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:29,38:67:99:959,0,875 1 158596524 rs12088990 A G 292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.308;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=0.000;SB=-2.901e+01;SOR=0.914;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:20,11:31:99:321,0,629 1 158597507 rs3737515 G C 1441.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.703;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=0.068;SB=-5.340e+02;SOR=0.765;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:28,54:82:99:1470,0,735 1 158606449 rs3738791 G T 1238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.104;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=7.565;HaplotypeScore=3.5444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-1.001;SB=-5.970e+02;SOR=0.943;VQSLOD=5.46;culprit=FS GT:AD:DP:GQ:PL 0/1:56,48:104:99:1267,0,1416 1 158607788 rs2518492 T G 1310.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.21;SB=-3.970e+02;SOR=2.303;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1339,99,0 1 158607935 rs857725 T G 1363.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.311;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-1.447;SB=-8.080e+02;SOR=0.813;VQSLOD=8.29;culprit=FS GT:AD:DP:GQ:PL 0/1:44,54:98:99:1392,0,1022 1 158609300 rs17635857 C G 700.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.365;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=1.952;HaplotypeScore=2.8311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.55;ReadPosRankSum=0.888;SB=-2.940e+02;SOR=0.969;VQSLOD=7.13;culprit=QD GT:AD:DP:GQ:PL 0/1:55,27:82:99:729,0,1466 1 158612236 rs863931 A G 3267.77 PASS AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.23;SB=-2.184e+03;SOR=0.693;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,120:120:99:3296,238,0 1 158612548 rs857721 T A 458.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.328;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.581;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-0.897;SB=-8.400e+01;SOR=1.755;VQSLOD=6.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,17:34:99:487,0,450 1 158612895 rs142815524 A G 143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=10.964;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=0.003;SB=-2.302e+01;SOR=1.850;VQSLOD=5.11;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:172,0,193 1 158614198 rs6702040 C T 843.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.292;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.961;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-0.034;SB=-3.730e+02;SOR=0.483;VQSLOD=9.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,36:79:99:872,0,1153 1 158618223 rs857677 C T 688.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-2.291e+02;SOR=1.708;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:54:717,54,0 1 158618455 rs2246434 G A 457.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.497;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=-0.172;SB=-2.070e+02;SOR=0.446;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:9,19:28:99:486,0,235 1 158618480 rs11265044 A T 129.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.49;ReadPosRankSum=0.165;SB=-2.302e+01;SOR=1.051;VQSLOD=8.84;culprit=QD GT:AD:DP:GQ:PL 0/1:14,6:20:99:158,0,363 1 158619728 rs2482965 A C 1926.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;SB=-9.440e+02;SOR=1.217;VQSLOD=5.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1955,141,0 1 158619822 rs857689 A C 661.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.693;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.117;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-1.407;SB=-3.080e+02;SOR=1.047;VQSLOD=7.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,25:50:99:690,0,662 1 158626378 rs857691 C T 1040.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.788;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=1.614;HaplotypeScore=3.6926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=0.666;SB=-6.230e+02;SOR=0.671;VQSLOD=8.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,44:102:99:1069,0,1528 1 158631171 rs2518493 A C 1422.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.716;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=1.562;HaplotypeScore=1.9931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=0.259;SB=-5.640e+02;SOR=0.924;VQSLOD=8.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:65,51:116:99:1451,0,1677 1 158637865 rs140998442 GAAA GA,G 958.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.315;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.62;MQ0=0;MQRankSum=0.490;POSITIVE_TRAIN_SITE;QD=33.06;RPA=16,14,13;RU=A;ReadPosRankSum=1.940;SB=-1.643e+02;SOR=1.270;STR;VQSLOD=2.39;culprit=MQRankSum GT:AD:DP:GQ:PL 1/2:2,7,20:35:99:996,438,361,184,0,128 1 158639601 rs2298801 A G 1502.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.822;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=7.224;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=0.169;SB=-8.600e+02;SOR=0.782;VQSLOD=5.40;culprit=FS GT:AD:DP:GQ:PL 0/1:56,57:113:99:1531,0,1388 1 158644105 rs703116 T A 634.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.752;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.697;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=0.597;SB=-1.490e+02;SOR=1.179;VQSLOD=7.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,22:50:99:663,0,748 1 158647495 rs325996 A T 2399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-1.502e+03;SOR=0.846;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2428,175,0 1 158647522 rs703121 A G 886.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.757;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=0.272;SB=-5.530e+02;SOR=0.749;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:46,35:81:99:915,0,1158 1 158647631 rs325995 T A 1147.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.69;SB=-4.260e+02;SOR=1.981;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:90:1176,90,0 1 158647669 rs703122 T C 352.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.352;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.703;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=0.295;SB=-6.000e+01;SOR=1.179;VQSLOD=7.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,13:33:99:381,0,532 1 158654786 rs385096 C T 303.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=0.00;SOR=4.804;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:332,27,0 1 158654852 rs857937 A G 606.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.743;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.778;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=-0.863;SB=-9.100e+01;SOR=0.379;VQSLOD=9.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,21:43:99:635,0,621 1 158655036 rs435080 G A 3116.77 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.86;SB=-1.761e+03;SOR=1.077;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,108:108:99:3145,226,0 1 158655162 rs2564859 C A 1272.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.67;SB=-6.250e+02;SOR=1.464;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:96:1301,96,0 1 158656281 rs2564858 T C 1261.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.35;SB=-4.850e+02;SOR=1.730;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:93:1290,93,0 1 158656347 rs72020964 C CAGAG 2994.73 PASS AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.22;RPA=9,11;RU=AG;SB=-1.247e+03;SOR=1.067;STR;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:55:99:3032,145,0 1 158656432 rs368011566 G GA 492.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DB;DP=58;ExcessHet=3.0103;FS=2.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.96;RPA=11,12;RU=A;ReadPosRankSum=0.541;SB=-1.910e+02;SOR=1.136;STR;VQSLOD=7.02;culprit=QD GT:AD:DP:GQ:PL 0/1:30,25:58:99:530,0,602 1 158669659 rs181767054 G A 1023.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=2.950;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=1.813;SB=-5.240e+02;SOR=0.700;VQSLOD=5.21;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:45,37:82:99:1052,0,1107 1 158687163 rs28568406 G A 1197.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.564;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=3.020;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.682;SB=-4.690e+02;SOR=1.132;VQSLOD=7.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,42:82:99:1226,0,1015 1 158687224 rs857703 G A 1613.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.259;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=3.697;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=-0.659;SB=-6.380e+02;SOR=1.137;VQSLOD=7.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,59:110:99:1642,0,1336 1 158724634 rs75906759 A G 1033.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.512;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.983;HaplotypeScore=3.5782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.000;SB=-4.460e+02;SOR=0.495;VQSLOD=9.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,45:76:99:1062,0,884 1 158725080 rs16841001 C T 2307.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.985;DB;DP=178;Dels=0.00;ExcessHet=3.0103;FS=1.175;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=1.551;SB=-1.196e+03;SOR=0.596;VQSLOD=7.43;culprit=DP GT:AD:DP:GQ:PL 0/1:94,84:178:99:2336,0,2606 1 158735595 rs857824 C T 1603.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.518;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=2.053;HaplotypeScore=2.7605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=0.633;SB=-9.190e+02;SOR=0.530;VQSLOD=7.49;culprit=DP GT:AD:DP:GQ:PL 0/1:93,65:158:99:1632,0,2359 1 158735691 rs857825 T C 2385.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.367;DB;DP=205;Dels=0.00;ExcessHet=3.0103;FS=1.081;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=0.700;SB=-1.331e+03;SOR=0.764;VQSLOD=7.13;culprit=DP GT:AD:DP:GQ:PL 0/1:111,94:205:99:2414,0,2988 1 158735740 rs857826 A G 2443.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.438;DB;DP=193;Dels=0.00;ExcessHet=3.0103;FS=7.137;HaplotypeScore=2.5310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.397;SB=-1.322e+03;SOR=0.708;VQSLOD=2.92;culprit=DP GT:AD:DP:GQ:PL 0/1:100,92:193:99:2472,0,2668 1 158735892 rs857827 A G 1869.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.416;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=3.534;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=0.492;SB=-9.160e+02;SOR=1.006;VQSLOD=7.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,62:112:99:1898,0,1377 1 158736215 rs6666753 G A 3589.77 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-1.701e+03;SOR=1.069;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,110:110:99:3618,274,0 1 158736445 rs1864346 C T 535.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.903;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=4.863;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.852;SB=-3.330e+02;SOR=0.226;VQSLOD=9.99;culprit=FS GT:AD:DP:GQ:PL 0/1:17,21:38:99:564,0,462 1 158736517 rs1864347 A T 277.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.203;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=-0.053;SB=-1.105e+02;SOR=0.160;VQSLOD=10.06;culprit=SOR GT:AD:DP:GQ:PL 0/1:5,12:17:99:306,0,157 1 158813819 rs857870 A G 564.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.760;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.079;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.706;SB=-2.570e+02;SOR=1.007;VQSLOD=7.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,24:53:99:593,0,697 1 158817474 rs2261107 A G 329.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.233;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.935;HaplotypeScore=1.8910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=0.550;SB=-7.797e+01;SOR=0.191;VQSLOD=10.03;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,12:19:99:358,0,210 1 158817975 rs2820121 T C 103.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=-0.632;SB=0.00;SOR=0.330;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:7,4:11:99:132,0,239 1 158909164 rs2325704 C A 1806.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.46;SB=-1.941e+02;SOR=3.912;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1835,147,0 1 158913525 rs856082 A G 754.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.82;SB=-1.573e+02;SOR=2.833;VQSLOD=7.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:783,57,0 1 158913532 rs4656498 C T 358.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.631;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-0.831;SB=-1.410e+02;SOR=0.418;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:11,15:26:99:387,0,312 1 158943328 rs12145823 T C 341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.648;DB;DP=23;Dels=0.04;ExcessHet=3.0103;FS=3.222;HaplotypeScore=3.7212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=0.788;SB=-9.732e-01;SOR=2.636;VQSLOD=5.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,11:22:99:370,0,303 1 158943382 rs12071136 C A 597.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.108;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-0.973;SB=-2.700e+02;SOR=0.616;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:19,23:42:99:626,0,426 1 158946629 rs72259836 A AATATATGTAT 2618.73 PASS AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.51;RPA=1,2;RU=ATATATGTAT;SB=-5.411e+02;SOR=2.303;STR;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:45:66:2656,66,0 1 158986477 rs866484 G C 2480.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-1.487e+03;SOR=0.798;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2509,181,0 1 158987941 rs856046 A G 547.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-1.563e+02;SOR=2.303;VQSLOD=7.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:42:576,42,0 1 159002222 rs861318 A G 146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.901;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=-1.099;SB=0.00;SOR=0.693;VQSLOD=10.26;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:175,0,206 1 159002301 rs2518553 T C 607.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.038;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.142;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=1.061;SB=-2.260e+02;SOR=0.941;VQSLOD=7.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,25:49:99:636,0,581 1 159002377 rs1057027 C A 908.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=-0.590;SB=-6.780e+02;SOR=0.673;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:34,42:76:99:937,0,812 1 159002389 rs1057028 T A 904.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.637;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-0.584;SB=-6.510e+02;SOR=0.601;VQSLOD=9.89;culprit=FS GT:AD:DP:GQ:PL 0/1:32,41:73:99:933,0,757 1 159021445 rs3737522 A G 709.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.789;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=6.963;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=1.938;SB=-2.840e+02;SOR=0.171;VQSLOD=8.58;culprit=FS GT:AD:DP:GQ:PL 0/1:30,28:58:99:738,0,864 1 159024424 rs7532207 A T 299.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.332;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=-0.777;SB=0.00;SOR=0.793;VQSLOD=9.91;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:328,0,287 1 159024668 rs6940 A T 1136.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-0.719;SB=-5.580e+02;SOR=0.735;VQSLOD=8.26;culprit=FS GT:AD:DP:GQ:PL 0/1:44,48:92:99:1165,0,1213 1 159043352 rs74555135 G A 312.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.414;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.436;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=-1.351;SB=-1.590e+02;SOR=0.269;VQSLOD=9.28;culprit=SOR GT:AD:DP:GQ:PL 0/1:18,14:32:99:341,0,551 1 159169641 rs862999 T C 947.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.794;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.782;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=-0.719;SB=-4.620e+02;SOR=0.811;VQSLOD=7.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:57,42:99:99:976,0,1495 1 159174824 rs863001 G C 1788.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3757;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-6.620e+02;SOR=1.697;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1817,132,0 1 159174920 rs863002 C T 426.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.430;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4575;MLEAC=1;MLEAF=0.500;MQ=60.42;MQ0=0;MQRankSum=0.750;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=1.306;SB=-2.440e+02;SOR=0.914;VQSLOD=4.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,18:26:99:455,0,188 1 159175004 rs17838198 CT C 259.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;DB;DP=15;ExcessHet=3.0103;FS=4.832;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=0.849;POSITIVE_TRAIN_SITE;QD=17.32;RPA=4,3;RU=T;ReadPosRankSum=-0.491;SB=-8.700e+01;SOR=1.518;STR;VQSLOD=0.423;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,10:15:99:297,0,131 1 159175354 rs12075 G A 2402.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.000;DB;DP=193;Dels=0.00;ExcessHet=3.0103;FS=1.115;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=-0.855;SB=-1.426e+03;SOR=0.725;VQSLOD=7.62;culprit=DP GT:AD:DP:GQ:PL 0/1:102,91:193:99:2431,0,2734 1 159272060 rs2251746 T C 412.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.631;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=0.089;SB=-2.030e+02;SOR=0.520;VQSLOD=10.01;culprit=FS GT:AD:DP:GQ:PL 0/1:24,18:42:99:441,0,700 1 159320979 rs10908710 G A 546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=0.909;SB=-3.550e+02;SOR=0.714;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:28,24:52:99:575,0,688 1 159402584 . G GT 2719.73 PASS AC=2;AF=1.00;AN=2;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;RPA=2,3;RU=T;SB=-9.610e+02;SOR=1.547;STR;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:77:99:2757,223,0 1 159402695 rs4491058 A C 499.41 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.682;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.28;ReadPosRankSum=-0.822;SB=-1.155e+02;SOR=1.179;VQSLOD=9.66;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,18:19:8:527,8,0 1 159409196 rs6691297 T C 866.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-2.860e+02;SOR=1.942;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:66:895,66,0 1 159409479 rs12145616 T G 588.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.498;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=6.237;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.63;ReadPosRankSum=0.905;SB=-1.650e+02;SOR=1.944;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 0/1:11,19:30:99:617,0,347 1 159409533 rs10908721 G A 1487.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.06;SB=-4.340e+02;SOR=2.252;VQSLOD=7.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1516,114,0 1 159409734 rs10908722 G T 3892.77 PASS AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.85;SB=-1.896e+03;SOR=1.074;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,115:115:99:3921,292,0 1 159409857 rs12048482 A G 1951.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.201;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=2.308;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=-0.687;SB=-1.061e+03;SOR=0.967;VQSLOD=7.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,70:125:99:1980,0,1368 1 159409884 rs12118628 G A 1453.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.743;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=7.181;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=0.005;SB=-8.310e+02;SOR=0.278;VQSLOD=8.24;culprit=FS GT:AD:DP:GQ:PL 0/1:63,57:120:99:1482,0,1822 1 159505297 rs4656837 C T 3791.77 PASS AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-1.958e+03;SOR=1.125;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,125:125:99:3820,283,0 1 159558258 rs2808661 A G 5054.77 PASS AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-3.171e+03;SOR=0.706;VQSLOD=6.44;culprit=DP GT:AD:DP:GQ:PL 1/1:0,159:159:99:5083,370,0 1 159684047 . CCACACACACA C,CCA 1494.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.571;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.33;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.31;RPA=19,14,15;RU=CA;ReadPosRankSum=1.226;SB=-6.570e+02;SOR=0.330;STR;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/2:1,8,8:25:99:1532,287,266,271,0,229 1 159778699 rs12042065 G A 1103.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.83;SB=-3.940e+02;SOR=2.012;VQSLOD=7.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:84:1132,84,0 1 159785284 rs4411129 C G 4864.77 PASS AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-2.051e+03;SOR=1.547;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,150:150:99:4893,355,0 1 159799599 . C CA 1701.73 PASS AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.03;RPA=3,4;RU=A;SB=-4.290e+02;SOR=2.303;STR;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1739,150,0 1 159802627 rs2494480 A C 2200.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.634;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=-0.442;SB=-9.760e+02;SOR=0.708;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:56,80:136:99:2229,0,1431 1 159824967 rs2501340 G C 844.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-2.501e+02;SOR=2.124;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:63:873,63,0 1 159825061 rs2501339 G C 1127.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;SB=-6.500e+02;SOR=0.927;VQSLOD=5.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:84:1156,84,0 1 159826048 rs2494500 C T 708.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.16;SB=-2.720e+02;SOR=1.292;VQSLOD=5.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:737,57,0 1 159826561 rs72113315 C CCA 414.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.90;RPA=9,10;RU=CA;ReadPosRankSum=0.494;SB=0.00;SOR=2.833;STR;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 0/1:2,11:18:44:452,0,44 1 159827416 rs4477268 C A 434.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.935;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=1.074;SB=-1.690e+02;SOR=0.527;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:17,18:35:99:463,0,499 1 159827456 rs2494503 A G 904.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.553;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=0.074;SB=-2.880e+02;SOR=0.539;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:28,32:60:99:933,0,773 1 159827475 rs11584200 G A 1241.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.845;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=1.022;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=-1.689;SB=-3.310e+02;SOR=0.963;VQSLOD=6.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,44:78:99:1270,0,869 1 159828128 rs2494504 A G 2619.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.16;SB=-1.099e+03;SOR=1.439;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2648,193,0 1 159828310 rs4074024 A T 385.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.738;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=-0.248;SB=-1.600e+02;SOR=1.144;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 0/1:6,14:20:99:414,0,166 1 159828746 rs2501337 G A 403.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.43;ReadPosRankSum=-0.586;SB=-8.097e+01;SOR=0.560;VQSLOD=8.78;culprit=FS GT:AD:DP:GQ:PL 0/1:4,14:18:99:432,0,112 1 159832425 rs2494507 G A 573.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.500;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=0.223;SB=-1.020e+02;SOR=2.015;VQSLOD=5.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,19:25:99:602,0,131 1 159842088 rs2494518 T A 1135.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.42;SB=-1.473e+02;SOR=3.611;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:87:1164,87,0 1 159842103 rs11265289 C T 627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.127;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=-0.534;SB=-1.600e+02;SOR=0.527;VQSLOD=10.27;culprit=FS GT:AD:DP:GQ:PL 0/1:18,24:42:99:656,0,517 1 159842566 rs4545332 T A 138.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.30;ReadPosRankSum=1.887;SB=-5.200e+01;SOR=1.140;VQSLOD=5.64;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:167,0,435 1 159842691 rs4460634 C G 418.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.320;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=1.331;SB=-1.580e+02;SOR=0.999;VQSLOD=7.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,15:37:99:447,0,512 1 159854251 rs16842789 T C 675.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.624;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.032;HaplotypeScore=1.8318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=0.086;SB=-3.500e+02;SOR=0.481;VQSLOD=10.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,28:58:99:704,0,833 1 159854392 rs2501325 C A 412.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-7.997e+01;SOR=2.833;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:441,33,0 1 159858290 rs3795334 T A 482.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.869;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=8.369;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.21;ReadPosRankSum=0.137;SB=-5.900e+01;SOR=1.904;VQSLOD=5.35;culprit=QD GT:AD:DP:GQ:PL 0/1:47,20:67:99:511,0,1279 1 159860488 rs3820100 A G 863.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.270;HaplotypeScore=7.8704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.094;SB=-2.540e+02;SOR=1.183;VQSLOD=8.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,32:68:99:892,0,934 1 159860547 rs35075962 C CT 153.50 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQ0=0;MQRankSum=0.696;POSITIVE_TRAIN_SITE;QD=10.96;RPA=19,20;RU=T;ReadPosRankSum=0.468;SB=0.00;SOR=2.303;STR;VQSLOD=1.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,11:21:3:189,0,3 1 159869548 rs56401752 C T 232.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.28;ReadPosRankSum=0.253;SB=0.00;SOR=2.303;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 0/1:2,8:10:51:261,0,51 1 159889686 . G A 582.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.041;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.89;ReadPosRankSum=-0.260;SB=-2.860e+02;SOR=0.634;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 0/1:25,24:49:99:611,0,647 1 159897126 rs13052 C T 108.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.747;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=10.569;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.72;ReadPosRankSum=-0.658;SB=-6.197e+01;SOR=0.014;VQSLOD=4.61;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:137,0,466 1 159897388 rs1934074 C T 781.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=0.246;SB=-2.990e+02;SOR=0.563;VQSLOD=10.06;culprit=FS GT:AD:DP:GQ:PL 0/1:31,31:62:99:810,0,859 1 159897681 . TAA TA,T 1481.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.944;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.15;RPA=15,14,13;RU=A;ReadPosRankSum=0.427;SB=-6.560e+02;SOR=0.981;STR;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 1/2:2,27,35:69:99:1519,687,564,567,0,592 1 159898100 rs3747615 A G 506.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.377;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=-1.173;SB=-2.880e+02;SOR=0.418;VQSLOD=9.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,20:34:99:535,0,393 1 159902526 rs3827531 T C 317.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=4.758;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.00;ReadPosRankSum=0.836;SB=-2.390e+02;SOR=0.209;VQSLOD=8.97;culprit=QD GT:AD:DP:GQ:PL 0/1:35,18:53:99:346,0,978 1 159906156 rs10908750 A G 540.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.806;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.463;HaplotypeScore=1.8928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=0.475;SB=-2.930e+02;SOR=0.898;VQSLOD=7.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,21:49:99:569,0,732 1 159906849 rs10797055 A G 264.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.91;ReadPosRankSum=0.000;SB=-4.276e+01;SOR=0.446;VQSLOD=8.95;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:293,0,150 1 159912533 rs112448119 AGTGT A 1596.73 PASS AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.74;MQ0=0;QD=24.64;RPA=13,11;RU=GT;SB=-4.090e+02;SOR=2.147;STR;VQSLOD=3.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:29:84:1634,84,0 1 159913388 rs1316275 G A 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=1.831;SB=0.00;SOR=0.551;VQSLOD=8.79;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:166,0,207 1 159922369 rs2840583 C T 3067.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.47;SB=-1.079e+03;SOR=1.718;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:3096,232,0 1 159922959 rs2249707 C T 690.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.75;SB=0.00;SOR=5.994;VQSLOD=8.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:719,57,0 1 159923111 rs2789417 T G 4928.77 PASS AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6098;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.00;SB=-2.182e+03;SOR=1.519;VQSLOD=5.47;culprit=DP GT:AD:DP:GQ:PL 1/1:0,154:154:99:4957,355,0 1 160064592 rs12044027 T C 258.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.980;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=0.103;SB=-4.176e+01;SOR=0.275;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:287,0,211 1 160090674 rs2854246 T C 1250.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=107.2824;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-4.060e+02;SOR=2.038;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:93:1279,93,0 1 160090681 rs67915591 CCCTT C 2607.73 PASS AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.52;SB=-8.460e+02;SOR=1.670;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:40:99:2645,114,0 1 160093222 rs2820581 C T 2608.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-1.215e+03;SOR=1.395;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2637,196,0 1 160093911 rs2820582 T C 3237.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6985;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-1.855e+03;SOR=0.987;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3266,232,0 1 160095127 rs7548116 T A 1737.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5444;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.76;SB=-4.000e+02;SOR=2.701;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1766,129,0 1 160097666 rs6695366 G A 3166.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-1.916e+03;SOR=0.793;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:3195,238,0 1 160122826 rs11265335 G A 969.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SB=-2.740e+02;SOR=2.226;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:75:998,75,0 1 160128671 rs4656888 G A 1050.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-2.361e+02;SOR=2.833;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:81:1079,81,0 1 160128994 rs10908764 C T 525.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=-1.583e+02;SOR=1.911;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:554,42,0 1 160133815 rs375558891 A C 240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.275;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.05;ReadPosRankSum=0.667;SB=0.00;SOR=0.693;VQSLOD=7.57;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:269,0,259 1 160134205 rs11265338 C T 1566.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-4.820e+02;SOR=2.348;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1595,123,0 1 160137300 rs4656889 A C 514.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.32;SB=-8.297e+01;SOR=3.126;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:543,39,0 1 160140998 rs1209804 G A 523.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.92;SB=-4.076e+01;SOR=4.047;VQSLOD=7.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:552,42,0 1 160141196 rs625549 C T 2735.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-1.615e+03;SOR=0.906;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:2764,205,0 1 160141285 rs669162 C T 2793.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.87;SB=-1.667e+03;SOR=0.716;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2822,208,0 1 160141286 rs625129 C G 2785.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.16;SB=-1.691e+03;SOR=0.693;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2814,205,0 1 160145586 rs2180750 G T 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.622;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-1.189;SB=-7.000e+01;SOR=0.368;VQSLOD=9.98;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:171,0,173 1 160145688 rs1884996 C G 536.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.341;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=1.718;SB=-1.720e+02;SOR=0.859;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:19,18:37:99:565,0,526 1 160146173 rs881291 T C 765.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.038;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-0.126;SB=-3.250e+02;SOR=0.931;VQSLOD=7.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,27:55:99:794,0,806 1 160147502 rs731852 T G 463.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.14;ReadPosRankSum=-0.008;SB=-2.350e+02;SOR=0.824;VQSLOD=8.65;culprit=QD GT:AD:DP:GQ:PL 0/1:36,21:57:99:492,0,931 1 160147510 rs731853 G A 423.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.263;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.635;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.83;ReadPosRankSum=-0.021;SB=-2.270e+02;SOR=0.382;VQSLOD=9.08;culprit=QD GT:AD:DP:GQ:PL 0/1:30,18:48:99:452,0,977 1 160151345 rs113684338 CA C 57.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=14;ExcessHet=3.0103;FS=7.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.44;RPA=17,16;RU=A;ReadPosRankSum=-2.977;SB=-9.732e-01;SOR=3.180;STR;VQSLOD=2.59;culprit=QD GT:AD:DP:GQ:PL 0/1:6,7:14:95:95,0,122 1 160151421 rs11265350 G C 605.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.632;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.9387;MLEAC=1;MLEAF=0.500;MQ=59.69;MQ0=0;MQRankSum=-1.084;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=0.710;SB=-1.770e+02;SOR=0.916;VQSLOD=3.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,23:54:99:634,0,807 1 160151450 rs7519748 T C 1034.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.321;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=2.143;HaplotypeScore=5.3277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=-0.531;SB=-3.060e+02;SOR=1.230;VQSLOD=7.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,36:76:99:1063,0,1003 1 160151624 . G GC 1408.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;DP=96;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.48;RPA=3,4;RU=C;ReadPosRankSum=2.290;SB=-6.470e+02;SOR=0.527;STR;VQSLOD=9.04;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:48,43:96:99:1446,0,1669 1 160156027 rs12131640 C G 395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.731;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=-1.368;SB=-2.050e+02;SOR=0.684;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:21,18:39:99:424,0,513 1 160163446 rs3747621 C T 1030.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.835;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=12.772;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=2.530;SB=-2.657e-01;SOR=3.576;VQSLOD=4.32;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:31,32:63:99:1059,0,923 1 160163449 rs3747622 G C 1106.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.282;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=7.222;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.29;ReadPosRankSum=2.197;SB=-2.004e+01;SOR=2.270;VQSLOD=5.10;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:31,33:64:99:1135,0,906 1 160164668 rs1186693 T C 686.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-3.976e+01;SOR=4.514;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:715,54,0 1 160165095 rs2275703 A C 697.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=0.072;SB=-1.360e+02;SOR=0.693;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:24,24:48:99:726,0,711 1 160165449 rs369926366 C CA 364.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.905;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.80;ReadPosRankSum=1.360;SB=-9.200e+01;SOR=0.458;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:402,0,270 1 160165451 rs10908769 C T 169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=-1.416;SB=-3.100e+01;SOR=1.002;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:9,7:16:99:198,0,282 1 160165572 rs60043899 T A 219.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.803;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.45;ReadPosRankSum=0.513;SB=-6.300e+01;SOR=0.646;VQSLOD=9.43;culprit=QD GT:AD:DP:GQ:PL 0/1:17,9:26:99:248,0,479 1 160169473 rs959166 T C 968.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.60;SB=-1.255e+02;SOR=3.767;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:75:997,75,0 1 160178356 rs667306 A G 2361.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.28;SB=-1.190e+03;SOR=1.252;VQSLOD=7.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2390,175,0 1 160188279 rs191844332 C A 421.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.248;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-0.963;SB=-6.300e+01;SOR=0.569;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:17,15:32:99:450,0,474 1 160236470 rs11265366 T A 1924.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.04;SB=-9.510e+02;SOR=1.143;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1953,144,0 1 160247185 rs10594 G C 2248.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.11;SB=-1.311e+03;SOR=1.165;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:81:99:2277,169,0 1 160251792 rs2795067 A G 2782.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=-1.267e+03;SOR=1.434;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2811,202,0 1 160260233 rs2298104 T C 2584.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.57;SB=-1.038e+03;SOR=1.640;VQSLOD=5.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2613,190,0 1 160262678 rs2369474 T C 364.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.16;SB=-4.176e+01;SOR=3.442;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:393,30,0 1 160263124 rs1317944 C T 4381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-2.603e+03;SOR=0.764;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,145:145:99:4410,325,0 1 160265515 rs3789042 T C 1623.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-4.910e+02;SOR=2.393;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1652,120,0 1 160275434 rs2066320 A G 3301.77 PASS AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=45.8422;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.00;SB=-1.048e+03;SOR=0.993;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,127:130:99:3330,253,0 1 160302444 rs4656897 G A 474.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=0.00;SOR=5.283;VQSLOD=8.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:503,39,0 1 160303416 rs1802778 G A 3802.77 PASS AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.25;SB=-2.301e+03;SOR=0.892;VQSLOD=6.92;culprit=DP GT:AD:DP:GQ:PL 1/1:0,130:130:99:3831,280,0 1 160309664 rs1886419 T G 2138.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.92;SB=-8.290e+02;SOR=1.716;VQSLOD=7.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2167,157,0 1 160313733 rs1886417 C A 1776.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.020;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.4864;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.76;ReadPosRankSum=-1.486;SB=-5.210e+02;SOR=0.782;VQSLOD=8.25;culprit=FS GT:AD:DP:GQ:PL 1/1:2,62:65:99:1805,137,0 1 160313744 rs66506837 GT G 78.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQ0=0;MQRankSum=0.915;POSITIVE_TRAIN_SITE;QD=2.54;RPA=22,21;RU=T;ReadPosRankSum=-0.822;SB=-2.203e+01;SOR=0.693;STR;VQSLOD=2.69;culprit=QD GT:AD:DP:GQ:PL 0/1:18,13:53:99:116,0,291 1 160318940 rs6669689 A G 1867.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-7.870e+02;SOR=1.727;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1896,135,0 1 160321180 rs2274185 C G 1307.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-0.552;SB=-5.400e+02;SOR=0.662;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:49,48:97:99:1336,0,1409 1 160327203 rs3831925 CT C 187.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.899;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;RPA=8,7;RU=T;ReadPosRankSum=0.449;SB=-7.000e+01;SOR=0.836;STR;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:22:99:225,0,220 1 160393905 rs12086448 A G 3401.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-1.271e+03;SOR=1.779;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:3430,247,0 1 160394173 rs12087593 A G 446.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=8.641;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=-0.235;SB=-2.300e+02;SOR=0.736;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 0/1:11,17:28:99:475,0,316 1 160394937 rs17380127 A C 2400.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.675;DB;DP=177;Dels=0.00;ExcessHet=3.0103;FS=0.551;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=0.092;SB=-1.457e+03;SOR=0.629;VQSLOD=7.88;culprit=DP GT:AD:DP:GQ:PL 0/1:89,88:177:99:2429,0,2288 1 160395003 rs17380141 G A 1939.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.632;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-1.951;SB=-1.012e+03;SOR=0.711;VQSLOD=8.04;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:76,70:146:99:1968,0,1941 1 160458782 rs3795327 A G 1897.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7692;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.20;SB=-8.240e+02;SOR=1.646;VQSLOD=7.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:1926,147,0 1 160518115 rs111536196 T C 1079.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.113;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-0.315;SB=-6.050e+02;SOR=0.727;VQSLOD=8.36;culprit=FS GT:AD:DP:GQ:PL 0/1:50,46:96:99:1108,0,1182 1 160518207 rs78790378 G A 492.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.579;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=-0.831;SB=-7.101e+01;SOR=0.409;VQSLOD=9.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,17:32:99:521,0,497 1 160519480 rs3766384 G C 92.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.43;ReadPosRankSum=-1.501;SB=0.00;SOR=0.330;VQSLOD=9.34;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:99:121,0,240 1 160519812 . C CA 534.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;DP=37;ExcessHet=3.0103;FS=5.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.28;RPA=1,2;RU=A;ReadPosRankSum=0.400;SB=-1.060e+02;SOR=1.802;STR;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 0/1:20,15:37:99:572,0,762 1 160519815 . C CT 405.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;RPA=1,2;RU=T;ReadPosRankSum=0.687;SB=-1.130e+02;SOR=0.846;STR;VQSLOD=9.95;culprit=FS GT:AD:DP:GQ:PL 0/1:17,12:31:99:443,0,681 1 160522391 rs80277172 C T 420.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.063;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.174;SB=-3.201e+01;SOR=0.484;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:19,15:34:99:449,0,629 1 160580807 rs349251 T C 238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.185;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=-1.490;SB=0.00;SOR=0.818;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:267,0,207 1 160585524 rs11590346 G A 294.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.515;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.65;ReadPosRankSum=-0.131;SB=-1.050e+02;SOR=1.802;VQSLOD=5.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,11:15:89:323,0,89 1 160585554 rs149160 C G 726.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.03;SB=-3.660e+02;SOR=1.085;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:54:755,54,0 1 160585706 rs151607 C T 410.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-8.197e+01;SOR=2.833;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:439,33,0 1 160604863 rs3766362 A T 939.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.64;SB=-4.176e+01;SOR=5.058;VQSLOD=4.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:75:968,75,0 1 160650913 rs4656926 A G 1884.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.27;SB=-4.740e+02;SOR=2.522;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1913,138,0 1 160654758 rs2295615 C G 1075.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.371;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=1.685;HaplotypeScore=2.5712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=-1.038;SB=-4.070e+02;SOR=0.934;VQSLOD=7.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:57,43:100:99:1104,0,1609 1 160654786 rs1980606 G A 1194.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=1.652;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=2.141;SB=-4.420e+02;SOR=0.931;VQSLOD=7.32;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:62,43:105:99:1223,0,1647 1 160681775 rs352684 A G 166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.34;ReadPosRankSum=-0.965;SB=-1.030e+02;SOR=0.307;VQSLOD=9.05;culprit=QD GT:AD:DP:GQ:PL 0/1:12,8:20:99:195,0,317 1 160717741 rs17313062 A G 269.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.647;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-0.341;SB=-3.500e+01;SOR=0.465;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:13,10:23:99:298,0,386 1 160717872 rs527733 T G 2096.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.53;SB=-1.381e+03;SOR=0.721;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2125,154,0 1 160722064 rs527342 A G 497.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.46;SB=0.00;SOR=5.283;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:526,39,0 1 160771761 rs1556517 C A 492.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.448;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.192;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=-1.126;SB=-2.660e+02;SOR=0.437;VQSLOD=9.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,19:45:99:521,0,623 1 160786670 rs560681 A G 591.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.160;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=2.871;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=-0.125;SB=-8.500e+01;SOR=1.286;VQSLOD=7.18;culprit=QD GT:AD:DP:GQ:PL 0/1:43,22:65:99:620,0,1172 1 160787725 rs579589 T C 108.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.012;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.06;ReadPosRankSum=0.078;SB=-4.276e+01;SOR=0.093;VQSLOD=9.60;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,5:12:99:137,0,192 1 160788131 rs3817407 T C 414.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.265;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=3.219;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=0.869;SB=-1.750e+02;SOR=0.303;VQSLOD=9.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,19:43:99:443,0,694 1 160789196 rs537540 A C 2050.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.16;SB=-1.019e+03;SOR=1.352;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2079,147,0 1 160789308 rs522897 C T 358.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=0.00;SOR=4.804;VQSLOD=8.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:387,30,0 1 160793442 rs474131 A G 6785.77 PASS AC=2;AF=1.00;AN=2;DB;DP=215;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-4.059e+03;SOR=0.800;VQSLOD=5.71;culprit=DP GT:AD:DP:GQ:PL 1/1:0,215:215:99:6814,491,0 1 160793560 rs509749 A G 5316.77 PASS AC=2;AF=1.00;AN=2;DB;DP=177;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;SB=-2.334e+03;SOR=1.405;VQSLOD=6.38;culprit=DP GT:AD:DP:GQ:PL 1/1:0,177:177:99:5345,391,0 1 160793962 rs506081 G C 3251.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.20;SB=-1.324e+03;SOR=1.633;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:3280,235,0 1 160797323 rs577453 T G 522.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-1.245e+02;SOR=2.712;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:551,42,0 1 160797514 rs576334 C G 1910.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.40;SB=-1.266e+03;SOR=0.723;VQSLOD=5.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:1939,138,0 1 160797684 rs574610 A G 427.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-3.277e+01;SOR=2.833;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:456,33,0 1 160801046 rs480104 C G 265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.734;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.372;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.18;ReadPosRankSum=0.934;SB=-1.640e+02;SOR=0.382;VQSLOD=8.46;culprit=QD GT:AD:DP:GQ:PL 0/1:29,14:43:99:294,0,861 1 160803802 rs11265493 A G 357.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.348;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=1.065;SB=-1.830e+02;SOR=0.368;VQSLOD=9.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,14:37:99:386,0,574 1 160809003 rs6682654 G A 320.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.431;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.88;ReadPosRankSum=-0.041;SB=-3.377e+01;SOR=0.317;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:19:99:349,0,257 1 160832212 rs11265500 A G 461.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.051;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=0.432;SB=-6.500e+01;SOR=0.631;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:17,16:33:99:490,0,482 1 160848993 rs3766357 G A 400.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.75;SB=0.00;SOR=4.977;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:429,33,0 1 160849030 . T A 768.77 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.42;SB=-1.135e+02;SOR=3.352;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:797,60,0 1 160849060 rs3766359 G A 1178.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-3.590e+02;SOR=2.303;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:90:1207,90,0 1 160849082 rs3820094 A G 1352.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=-5.430e+02;SOR=1.814;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1381,108,0 1 160849367 rs2274905 G T 839.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.59;SB=-1.513e+02;SOR=3.014;VQSLOD=5.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:66:868,66,0 1 160850280 rs4656957 G A 1566.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.34;SB=-4.790e+02;SOR=2.303;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1595,120,0 1 160850936 rs2236515 T C 3991.77 PASS AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-2.279e+03;SOR=1.129;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,135:135:99:4020,289,0 1 160851594 . GAAAAAAA G 630.74 PASS AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;RPA=21,14;RU=A;SB=-8.676e+01;SOR=3.056;STR;VQSLOD=7.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,9:10:27:668,27,0 1 160851619 rs10908808 A G 445.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.86;SB=-4.276e+01;SOR=4.174;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:36:474,36,0 1 160851826 rs2274907 A T 3104.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-1.766e+03;SOR=0.693;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:97:99:3133,241,0 1 160851894 rs2274908 G A 3756.77 PASS AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=-1.454e+03;SOR=1.368;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,120:120:99:3785,286,0 1 160852022 rs2274909 C T 5060.77 PASS AC=2;AF=1.00;AN=2;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.25;SB=-3.143e+03;SOR=0.907;VQSLOD=5.88;culprit=DP GT:AD:DP:GQ:PL 1/1:0,173:173:99:5089,367,0 1 160852046 rs2274910 T C 4767.77 PASS AC=2;AF=1.00;AN=2;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-2.464e+03;SOR=1.261;VQSLOD=6.18;culprit=DP GT:AD:DP:GQ:PL 1/1:0,156:156:99:4796,340,0 1 160852167 rs6427552 C T 1338.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.31;SB=0.00;SOR=7.168;VQSLOD=5.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:99:1367,105,0 1 160854526 rs2297559 G A 540.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.81;SB=-1.225e+02;SOR=2.712;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:569,42,0 1 160917902 rs1556519 T C 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.219;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-0.989;SB=-3.100e+01;SOR=1.051;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:12,10:22:99:315,0,383 1 160920809 rs3829790 A G 2627.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.20;SB=-1.601e+03;SOR=0.935;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2656,199,0 1 160920813 rs790059 A G 2777.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-1.600e+03;SOR=0.959;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:2806,202,0 1 160920966 rs6680969 C T 3639.77 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SB=-1.771e+03;SOR=1.022;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,110:110:99:3668,277,0 1 160921230 rs4656971 T G 2211.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.49;SB=-1.185e+02;SOR=5.283;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:2240,166,0 1 160969008 . T TG 1475.73 PASS AC=2;AF=1.00;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.48;RPA=4,5;RU=G;SB=-5.660e+02;SOR=1.292;STR;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:43:99:1513,120,0 1 160969585 rs790056 C T 2657.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7145;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-1.550e+03;SOR=0.716;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:86:99:2686,211,0 1 160969717 rs368748813 G A 1288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=8.872;HaplotypeScore=2.6594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.61;ReadPosRankSum=-0.369;SB=-7.780e+02;SOR=0.617;VQSLOD=3.94;culprit=FS GT:AD:DP:GQ:PL 0/1:56,55:111:99:1317,0,1491 1 160971146 rs790055 A G 2439.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=-1.230e+03;SOR=1.367;VQSLOD=7.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2468,175,0 1 160990875 rs28365980 T C 4319.77 PASS AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8777;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=-1.828e+03;SOR=1.626;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,140:140:99:4348,310,0 1 160990876 rs28365979 C A 4004.77 PASS AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8777;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.23;SB=-1.725e+03;SOR=1.680;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,137:137:99:4033,304,0 1 160990878 rs28365978 C T 4167.77 PASS AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8246;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-1.779e+03;SOR=1.662;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,136:137:99:4196,307,0 1 161008572 rs3766383 C A 1537.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.72;SB=-6.700e+02;SOR=1.251;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1566,120,0 1 161008803 rs3766382 G T 1241.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-4.460e+02;SOR=2.093;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:93:1270,93,0 1 161010774 rs2516841 A G 770.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SB=-1.155e+02;SOR=3.352;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:799,60,0 1 161011317 rs2516840 A G 676.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.16;SB=-3.876e+01;SOR=4.407;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:705,54,0 1 161011716 rs2774276 G C 2022.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4742;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-6.710e+02;SOR=2.019;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2051,147,0 1 161012760 rs2073653 T C 1502.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-7.250e+02;SOR=1.225;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1531,108,0 1 161013312 rs6686076 T C 762.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-3.910e+02;SOR=1.136;VQSLOD=7.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:57:791,57,0 1 161022380 rs4396136 G A 3680.77 PASS AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-2.085e+03;SOR=1.022;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,124:124:99:3709,268,0 1 161023252 rs67415986 TTCTCTCTCTCTCTCTC T 1215.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;RPA=22,14;RU=TC;SB=0.00;SOR=4.174;STR;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,7:24:21:1253,21,0 1 161026079 rs7516231 A T 427.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-8.097e+01;SOR=2.985;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:456,36,0 1 161042836 rs138085255 T G 153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.176;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=-1.408;SB=-1.765e+00;SOR=0.963;VQSLOD=9.21;culprit=QD GT:AD:DP:GQ:PL 0/1:11,6:17:99:182,0,355 1 161043735 rs4656285 A C 684.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-3.590e+02;SOR=1.179;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:54:713,54,0 1 161043764 rs4656978 G A 321.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=-0.563;SB=-1.680e+02;SOR=0.495;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:6,12:18:99:350,0,154 1 161047125 rs60601836 CTATA C 713.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQ0=0;MQRankSum=0.873;POSITIVE_TRAIN_SITE;QD=28.17;RPA=4,2;RU=TA;ReadPosRankSum=1.523;SB=0.00;SOR=1.292;STR;VQSLOD=3.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,12:19:99:751,0,433 1 161049358 rs3820097 G A 970.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.36;SB=-4.300e+02;SOR=1.329;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:75:999,75,0 1 161162173 rs7512012 G A 970.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-4.000e+02;SOR=1.609;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:72:999,72,0 1 161163037 rs4233367 T C 712.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-2.950e+02;SOR=1.519;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:54:741,54,0 1 161163633 . C T 1852.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.842;DP=63;Dels=0.00;ExcessHet=3.0103;FS=3.222;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=29.41;ReadPosRankSum=1.183;SB=-1.086e+03;SOR=0.428;VQSLOD=3.56;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,62:63:99:1881,103,0 1 161164166 rs11265564 A G 497.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.25;SB=0.00;SOR=5.283;VQSLOD=7.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:526,39,0 1 161166723 rs35630547 G T 829.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.636;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.668;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=1.035;SB=-3.500e+02;SOR=0.276;VQSLOD=9.42;culprit=SOR GT:AD:DP:GQ:PL 0/1:39,31:70:99:858,0,1099 1 161167698 rs4589131 T G 1121.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.66;SB=-7.797e+01;SOR=4.615;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:87:1150,87,0 1 161168004 rs33941127 C T 1278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.929;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-1.432;SB=-7.520e+02;SOR=0.624;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 0/1:54,46:100:99:1307,0,1403 1 161172525 rs10908826 C T 168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.88;ReadPosRankSum=1.940;SB=0.00;SOR=1.085;VQSLOD=9.87;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,6:10:99:197,0,122 1 161176137 rs4656993 A G 5048.77 PASS AC=2;AF=1.00;AN=2;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;SB=-2.011e+03;SOR=1.625;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,152:152:99:5077,367,0 1 161179877 rs4656994 G A 1162.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.970;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=5.028;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=1.004;SB=-4.540e+02;SOR=1.269;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 0/1:61,44:105:99:1191,0,1687 1 161183516 rs1136207 C T 1528.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.005;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=-0.300;SB=-4.980e+02;SOR=0.883;VQSLOD=5.83;culprit=QD GT:AD:DP:GQ:PL 0/1:24,50:74:99:1557,0,680 1 161184059 . C CTGTGTG 569.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.74;RPA=15,18;RU=TG;ReadPosRankSum=-0.703;SB=0.00;SOR=1.981;STR;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 0/1:3,9:25:20:607,0,20 1 161184097 rs1136224 A G 54.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.790;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.21;ReadPosRankSum=1.016;SB=0.00;SOR=0.124;VQSLOD=9.35;culprit=QD GT:AD:DP:GQ:PL 0/1:10,3:13:83:83,0,347 1 161185058 rs2070901 G T 1631.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.503;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=-0.875;SB=-6.010e+02;SOR=0.649;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:51,63:115:99:1660,0,1420 1 161187665 rs2070902 C T 334.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.332;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=3.203;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=0.405;SB=-9.732e-01;SOR=2.608;VQSLOD=6.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,12:24:99:363,0,345 1 161191228 rs67857806 G A 289.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.533;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQ0=0;MQRankSum=1.171;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=-0.435;SB=-6.400e+01;SOR=0.527;VQSLOD=3.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,11:24:99:318,0,397 1 161191450 . CTTTTTTT C 544.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;DP=35;ExcessHet=3.0103;FS=3.197;MLEAC=1;MLEAF=0.500;MQ=59.91;MQ0=0;MQRankSum=1.458;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.67;RPA=28,21;RU=T;ReadPosRankSum=1.563;SB=-1.480e+00;SOR=2.303;STR;VQSLOD=0.022;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,9:35:99:582,0,284 1 161196166 rs3813628 A C 591.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.688;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.5417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=0.273;SB=-1.680e+02;SOR=0.769;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:32,24:56:99:620,0,851 1 161197244 rs4233368 C A 130.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=-0.864;SB=-3.300e+01;SOR=0.412;VQSLOD=10.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,5:12:99:159,0,205 1 161200487 rs4073054 C A 583.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=0.00;SOR=5.670;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:612,48,0 1 161200586 rs2307418 T G 704.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.871;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.81;ReadPosRankSum=0.277;SB=-2.970e+02;SOR=0.651;VQSLOD=8.96;culprit=QD GT:AD:DP:GQ:PL 0/1:49,31:81:99:733,0,1328 1 161202605 rs2307424 G A 1408.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.885;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=1.681;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=0.494;SB=-8.450e+02;SOR=0.495;VQSLOD=10.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,53:96:99:1437,0,1065 1 161203227 rs2502815 G A 301.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.584;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=-0.637;SB=0.00;SOR=1.765;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:4,10:14:99:330,0,115 1 161204906 rs3123553 G A 146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=61.78;MQ0=0;MQRankSum=-0.431;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=-0.243;SB=-1.020e+02;SOR=1.179;VQSLOD=3.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,8:12:99:175,0,102 1 161206516 rs67221302 G GTTTTCT 377.80 PASS AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;RPA=4,5;RU=TTTTCT;SB=0.00;SOR=3.912;STR;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,6:18:18:415,18,0 1 161228800 rs4078110 C T 164.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.077;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=-0.388;SB=-6.200e+01;SOR=1.781;VQSLOD=5.91;culprit=QD GT:AD:DP:GQ:PL 0/1:9,9:18:99:193,0,303 1 161253657 rs4255401 C T 404.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.179;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.60;ReadPosRankSum=1.136;SB=-3.300e+01;SOR=1.230;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:9,14:23:99:433,0,263 1 161253684 rs66526557 AT A 203.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;RPA=5,4;RU=T;ReadPosRankSum=1.459;SB=-3.577e+01;SOR=0.346;STR;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:241,0,151 1 161254280 rs4477295 G C 441.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.617;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.785;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-0.199;SB=-9.300e+01;SOR=1.675;VQSLOD=6.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,17:29:99:470,0,280 1 161276434 rs6674383 A G 2240.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.86;SB=-1.190e+03;SOR=0.758;VQSLOD=3.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2269,169,0 1 161332091 . CT C 132.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;DP=44;ExcessHet=3.0103;FS=3.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.02;RPA=14,13;RU=T;ReadPosRankSum=-0.695;SB=-5.600e+01;SOR=0.216;STR;VQSLOD=6.46;culprit=QD GT:AD:DP:GQ:PL 0/1:31,13:44:99:170,0,696 1 161479745 rs1801274 A G 2618.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;DB;DP=223;Dels=0.00;ExcessHet=3.0103;FS=1.623;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=0.056;SB=-1.708e+03;SOR=0.827;VQSLOD=6.67;culprit=DP GT:AD:DP:GQ:PL 0/1:114,109:223:99:2647,0,3044 1 161481561 rs10800357 C T 118.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.463;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.90;ReadPosRankSum=-0.464;SB=-6.100e+01;SOR=1.144;VQSLOD=6.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,6:12:99:147,0,145 1 161495477 rs72633678 A T 5248.77 PASS AC=2;AF=1.00;AN=2;DB;DP=168;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-2.420e+03;SOR=1.381;VQSLOD=5.13;culprit=DP GT:AD:DP:GQ:PL 1/1:0,167:168:99:5277,391,0 1 161495885 rs404508 T C 6591.77 PASS AC=2;AF=1.00;AN=2;DB;DP=209;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=-3.909e+03;SOR=0.782;VQSLOD=5.73;culprit=DP GT:AD:DP:GQ:PL 1/1:0,209:209:99:6620,479,0 1 161496530 rs1042881 C G 829.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.297;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=-1.507;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=1.668;SB=-1.765e+00;SOR=1.445;VQSLOD=2.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,26:57:99:858,0,883 1 161518879 rs142265629 A G 893.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.197;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.049;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.83;MQ0=3;MQRankSum=0.685;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=0.540;SB=-3.890e+02;SOR=1.151;VQSLOD=0.071;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,36:65:99:922,0,621 1 161559327 rs3933769 A G 2499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;SB=-8.180e+02;SOR=2.124;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2528,199,0 1 161561236 rs143998157 C T 655.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.262;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=3.264;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.80;MQ0=2;MQRankSum=0.780;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=0.542;SB=-7.700e+01;SOR=1.577;VQSLOD=0.108;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,25:46:99:684,0,547 1 161565324 rs61801822 C T 1432.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.63;MQ0=7;QD=22.74;SB=-6.710e+02;SOR=1.199;VQSLOD=2.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1461,105,0 1 161565479 rs111504845 G A 472.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.009;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=58.16;MQ0=0;MQRankSum=0.745;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=1.330;SB=-2.340e+02;SOR=0.676;VQSLOD=2.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,19:50:99:501,0,747 1 161577657 rs61802306 G A 1403.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.028;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=56.67;MQ0=2;MQRankSum=-4.607;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=0.947;SB=-5.590e+02;SOR=0.730;VQSLOD=0.772;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,51:112:99:1432,0,1751 1 161594226 rs61803008 C T 524.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.07;SB=0.00;SOR=5.421;VQSLOD=8.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:553,42,0 1 161594246 rs61803009 G T 831.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.32;SB=-4.176e+01;SOR=4.892;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:66:860,66,0 1 161594525 rs61803010 G C 862.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-1.225e+02;SOR=3.767;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:891,72,0 1 161594526 rs61803011 T G 917.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;SB=-1.115e+02;SOR=3.767;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:946,72,0 1 161594561 rs61803012 C G 597.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.13;SB=-4.276e+01;SOR=4.294;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:626,48,0 1 161596283 rs418215 G A 3747.77 PASS AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.0503;MLEAC=2;MLEAF=1.00;MQ=42.97;MQ0=2;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.31;SB=-1.661e+02;SOR=5.211;VQSLOD=3.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,116:116:99:3776,313,0 1 161600287 rs143868437 AT A 1017.73 PASS AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=32.83;RPA=4,3;RU=T;SB=-1.075e+02;SOR=3.981;STR;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:33:93:1055,93,0 1 161600832 rs3883934 G T 699.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;SB=0.00;SOR=5.994;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:728,57,0 1 161601133 rs61803027 T C 680.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.15;SB=0.00;SOR=5.892;VQSLOD=8.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:709,54,0 1 161654948 rs6686673 T C 77.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.07;ReadPosRankSum=0.456;SB=-2.701e+01;SOR=1.535;VQSLOD=5.43;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:99:106,0,147 1 161676904 rs1340977 T C 569.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.23;SB=-3.876e+01;SOR=4.047;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:598,45,0 1 161676970 rs1340978 A G 1780.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.25;SB=-5.770e+02;SOR=2.049;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1809,129,0 1 161680012 rs10917740 A C 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=0.156;SB=0.00;SOR=0.446;VQSLOD=10.25;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:163,0,235 1 161680258 rs6427618 G A 1371.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=4.315;HaplotypeScore=2.9151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=-0.228;SB=-7.470e+02;SOR=1.047;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 0/1:32,54:86:99:1400,0,863 1 161680413 rs112039702 GA G 436.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.575;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.93;RPA=11,10;RU=A;ReadPosRankSum=1.209;SB=-2.090e+02;SOR=0.829;STR;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 0/1:19,25:48:99:474,0,420 1 161680432 rs17405152 A G 652.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.812;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=5.986;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-0.068;SB=-2.530e+02;SOR=1.340;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 0/1:27,23:50:99:681,0,737 1 161680438 . T C 651.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.142;DP=51;Dels=0.00;ExcessHet=3.0103;FS=3.933;HaplotypeScore=3.7473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.78;ReadPosRankSum=-0.963;SB=-3.100e+02;SOR=0.924;VQSLOD=4.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,24:51:99:680,0,729 1 161680518 rs61801161 T A 590.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.849;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.048;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=0.252;SB=-3.370e+02;SOR=0.495;VQSLOD=9.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,22:56:99:619,0,867 1 161680786 rs12043179 T C 365.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.053;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=-0.425;SB=-1.000e+02;SOR=1.329;VQSLOD=6.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,12:20:99:394,0,192 1 161680791 rs12043181 T C 292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=-0.635;SB=-9.400e+01;SOR=1.329;VQSLOD=7.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,13:22:99:321,0,205 1 161680868 rs1934908 T C 314.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.442;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-0.206;SB=-1.150e+02;SOR=1.445;VQSLOD=7.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,12:26:99:343,0,422 1 161681848 rs4301614 C T 1691.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.753;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.707;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=0.291;SB=-9.290e+02;SOR=0.606;VQSLOD=9.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,62:113:99:1720,0,1434 1 161683136 rs11746 G A 1898.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.991;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=1.366;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=-0.380;SB=-9.170e+02;SOR=0.863;VQSLOD=8.05;culprit=DP GT:AD:DP:GQ:PL 0/1:65,74:139:99:1927,0,1757 1 161695639 rs7520519 G T 3052.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.30;SB=-1.325e+03;SOR=1.270;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:3081,229,0 1 161696088 rs1417582 T C 2042.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.42;SB=-8.810e+02;SOR=1.467;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2071,154,0 1 161696782 rs11585450 G C 258.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.029;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=-0.083;SB=-6.601e+01;SOR=0.527;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:21:99:287,0,235 1 161697547 rs12044611 T C 308.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.163;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.199;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=0.296;SB=-6.500e+01;SOR=1.473;VQSLOD=6.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,12:19:99:337,0,155 1 161721351 rs7540096 A G 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.020;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.067;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=0.401;SB=-9.732e-01;SOR=1.981;VQSLOD=5.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,9:22:99:317,0,338 1 161721707 rs1063178 C T 1974.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.908;DB;DP=167;Dels=0.00;ExcessHet=3.0103;FS=5.529;HaplotypeScore=1.8997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.111;SB=-1.201e+03;SOR=0.697;VQSLOD=4.99;culprit=FS GT:AD:DP:GQ:PL 0/1:87,80:167:99:2003,0,2190 1 161722779 . C CAAA 400.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.28;RPA=10,13;RU=A;ReadPosRankSum=-0.322;SB=-3.900e+01;SOR=0.909;STR;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:25,14:39:99:438,0,981 1 161736035 rs2298019 A G 3971.77 PASS AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.10;SB=-1.676e+03;SOR=1.532;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,120:120:99:4000,286,0 1 161748056 rs2070151 C T 685.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.47;ReadPosRankSum=-1.351;SB=-4.750e+02;SOR=0.595;VQSLOD=9.12;culprit=QD GT:AD:DP:GQ:PL 0/1:48,33:81:99:714,0,1276 1 161753802 rs2271013 T C 892.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.151;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=1.891;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=0.866;SB=-4.890e+02;SOR=0.487;VQSLOD=9.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,35:75:99:921,0,945 1 161753841 rs2271012 G A 992.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.832;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=-1.307;SB=-5.130e+02;SOR=0.850;VQSLOD=7.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,41:83:99:1021,0,1026 1 161753917 rs1910480 G C 676.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.875;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.606;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-0.973;SB=-1.900e+02;SOR=1.244;VQSLOD=7.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,24:52:99:705,0,746 1 161754004 rs1503807 T A 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=0.628;SB=0.00;SOR=0.446;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:163,0,206 1 161761276 rs2070150 G C 655.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.695;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.11;ReadPosRankSum=0.161;SB=-4.210e+02;SOR=0.581;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:43,29:72:99:684,0,1089 1 161761312 rs1135983 C T 755.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.178;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.886;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=0.690;SB=-4.560e+02;SOR=0.570;VQSLOD=8.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,31:74:99:784,0,1095 1 161789625 rs3817085 C G 436.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.961;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=-1.787;SB=-1.640e+02;SOR=0.656;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 0/1:24,17:41:99:465,0,671 1 161790714 . A ATT 175.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.423;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.98;RPA=16,18;RU=T;ReadPosRankSum=-0.153;SB=0.00;SOR=0.693;STR;VQSLOD=8.60;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:213,0,198 1 161816108 rs12405289 G T 48.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.795;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.25;ReadPosRankSum=0.868;SB=0.00;SOR=0.090;VQSLOD=8.91;culprit=QD GT:AD:DP:GQ:PL 0/1:12,3:15:77:77,0,382 1 161822959 rs2340717 C T 509.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=-4.076e+01;SOR=4.047;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:538,42,0 1 161823011 rs2257107 T A 166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.895;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.05;ReadPosRankSum=-0.364;SB=-1.905e+01;SOR=1.321;VQSLOD=4.94;culprit=QD GT:AD:DP:GQ:PL 0/1:24,9:33:99:195,0,652 1 161823197 . G GT 2251.73 PASS AC=2;AF=1.00;AN=2;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.29;RPA=2,3;RU=T;SB=-6.950e+02;SOR=1.850;STR;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:64:99:2289,184,0 1 161830214 rs144003510 GTA G 147.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;RPA=7,6;RU=TA;ReadPosRankSum=-0.528;SB=0.00;SOR=0.551;STR;VQSLOD=10.06;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:14:99:185,0,245 1 161833233 rs3767632 G A 502.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.954;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.86;ReadPosRankSum=0.635;SB=-4.076e+01;SOR=0.693;VQSLOD=9.00;culprit=FS GT:AD:DP:GQ:PL 0/1:7,16:23:99:531,0,221 1 161928327 rs9482 A G 1184.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.222;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=5.367;HaplotypeScore=1.8653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-1.798;SB=-4.780e+02;SOR=1.284;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 0/1:45,49:94:99:1213,0,1109 1 161954448 rs12726227 C T 309.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.952;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-0.463;SB=-2.901e+01;SOR=0.317;VQSLOD=9.89;culprit=FS GT:AD:DP:GQ:PL 0/1:12,12:24:99:338,0,369 1 161967681 rs2499836 A G 1883.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=0.590;HaplotypeScore=6.5644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=0.565;SB=-1.215e+03;SOR=0.792;VQSLOD=8.44;culprit=DP GT:AD:DP:GQ:PL 0/1:78,80:158:99:1912,0,1993 1 161976234 rs12022536 A G 714.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.870;HaplotypeScore=9.1406;MLEAC=1;MLEAF=0.500;MQ=60.14;MQ0=0;MQRankSum=-0.756;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=0.131;SB=-3.590e+02;SOR=0.836;VQSLOD=0.277;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,30:79:99:743,0,1331 1 161976272 . G GA 1264.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.160;DP=66;ExcessHet=3.0103;FS=4.025;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;MQRankSum=0.393;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.44;RPA=10,11;RU=A;ReadPosRankSum=1.079;SB=-5.220e+02;SOR=0.223;STR;VQSLOD=0.437;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:6,53:66:31:1302,31,0 1 161987385 rs16839677 G A 211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.749;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-0.978;SB=-3.404e+01;SOR=0.693;VQSLOD=10.24;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:240,0,248 1 162257033 rs10800405 C G 497.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.904;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=0.977;SB=-2.840e+02;SOR=0.627;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:14,21:35:99:526,0,344 1 162313518 rs3751285 A G 2547.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;SB=-7.650e+02;SOR=2.303;VQSLOD=8.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2576,184,0 1 162313597 rs347278 T C 4381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-2.164e+03;SOR=1.179;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,138:138:99:4410,322,0 1 162313735 rs3751284 C T 3184.79 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.50;SB=-8.540e+02;SOR=2.400;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:3213,238,0 1 162335052 rs905721 C T 1044.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.65;SB=-2.261e+02;SOR=2.765;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:81:1073,81,0 1 162335424 rs1964052 T C 765.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;SB=-1.941e+02;SOR=2.400;VQSLOD=7.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:794,57,0 1 162343774 rs7512126 A G 3645.77 PASS AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.64;SB=-1.104e+03;SOR=2.404;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,119:119:99:3674,286,0 1 162344102 rs2282397 C T 5934.77 PASS AC=2;AF=1.00;AN=2;DB;DP=199;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6108;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-3.541e+03;SOR=0.820;VQSLOD=5.52;culprit=DP GT:AD:DP:GQ:PL 1/1:0,198:199:99:5963,442,0 1 162344390 rs164159 A G 2819.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-8.160e+02;SOR=2.387;VQSLOD=5.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2848,208,0 1 162345091 rs164181 G A 2344.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.69;SB=-6.310e+02;SOR=2.303;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2373,178,0 1 162345472 rs164183 C T 1206.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.62;SB=-1.901e+02;SOR=3.086;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:93:1235,93,0 1 162348662 rs164188 C T 569.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.52;SB=-8.097e+01;SOR=3.383;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:45:598,45,0 1 162351455 rs1984871 G T 191.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=-0.705;SB=0.00;SOR=1.022;VQSLOD=10.38;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:220,0,164 1 162352111 rs164189 G A 122.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=5.566;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.85;ReadPosRankSum=0.000;SB=-1.352e-01;SOR=2.303;VQSLOD=5.92;culprit=QD GT:AD:DP:GQ:PL 0/1:16,5:21:99:151,0,404 1 162352819 rs1123005 A G 227.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.118;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.11;ReadPosRankSum=1.545;SB=0.00;SOR=0.223;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:17,8:25:99:256,0,502 1 162367103 rs34001279 G T 580.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.536;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.709;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=-0.824;SB=-3.310e+02;SOR=0.673;VQSLOD=5.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,22:41:99:609,0,458 1 162367235 rs164124 G A 401.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.19;SB=-3.976e+01;SOR=3.442;VQSLOD=8.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:430,33,0 1 162415600 rs469737 T C 262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.411;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.377;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.73;ReadPosRankSum=0.070;SB=-1.930e+02;SOR=0.853;VQSLOD=5.85;culprit=QD GT:AD:DP:GQ:PL 0/1:20,14:34:99:291,0,454 1 162467014 rs10919549 C G 1592.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.244;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=-1.356;SB=-4.210e+02;SOR=0.770;VQSLOD=8.00;culprit=FS GT:AD:DP:GQ:PL 0/1:50,53:103:99:1621,0,1436 1 162546860 . ATATT A 331.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=0.736;QD=19.14;ReadPosRankSum=-0.691;SB=-1.764e+00;SOR=1.609;VQSLOD=1.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,6:15:99:369,0,482 1 162722846 rs1632311 C G 3517.77 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-1.214e+03;SOR=1.938;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,108:108:99:3546,256,0 1 162725655 rs1115570 A C 971.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-1.205e+02;SOR=3.912;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:81:1000,81,0 1 162731404 rs2684867 C T 803.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.95;SB=-7.397e+01;SOR=4.003;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:63:832,63,0 1 162736851 rs35772230 G GAAAA 602.73 PASS AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.35;RPA=4,8;RU=A;SB=0.00;SOR=5.136;STR;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:640,36,0 1 162736856 rs1533083 C A 488.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;QD=34.72;SB=0.00;SOR=5.283;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:517,39,0 1 162740327 rs1780003 T C 3191.82 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.11;SB=-1.619e+03;SOR=1.300;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3220,244,0 1 162742180 rs1704762 T C 907.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;SB=-2.021e+02;SOR=2.753;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:69:936,69,0 1 162743418 rs1355287 G T 2057.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.58;SB=-1.045e+03;SOR=1.308;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2086,150,0 1 162748588 rs907074 C A 786.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-1.951e+02;SOR=2.584;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:63:815,63,0 1 162754049 rs11338 G A 501.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-1.513e+02;SOR=2.049;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:39:530,39,0 1 162760551 rs1704754 C T 4427.77 PASS AC=2;AF=1.00;AN=2;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5233;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=10;POSITIVE_TRAIN_SITE;QD=28.02;SB=-1.802e+03;SOR=1.708;VQSLOD=5.13;culprit=DP GT:AD:DP:GQ:PL 1/1:5,153:158:99:4456,337,0 1 162760554 rs71519246 T C 4690.77 PASS AC=2;AF=1.00;AN=2;DB;DP=161;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5233;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=10;POSITIVE_TRAIN_SITE;QD=29.14;SB=-1.734e+03;SOR=1.657;VQSLOD=5.27;culprit=DP GT:AD:DP:GQ:PL 1/1:0,161:161:99:4719,343,0 1 162765475 rs2684884 G C 938.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.08;SB=-6.330e+02;SOR=0.804;VQSLOD=5.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:69:967,69,0 1 162765636 rs137959701 AAGTCTTAGATGAAG A 788.87 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=33.81;RPA=2,1;RU=AGTCTTAGATGAAG;SB=-3.310e+02;SOR=1.022;STR;VQSLOD=5.34;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,5:10:15:826,15,0 1 162766476 rs1780019 C T 3393.77 PASS AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.01;SB=-2.025e+03;SOR=0.936;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,117:117:99:3422,250,0 1 162768939 rs71096414 TA T 410.73 PASS AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.87;RPA=2,1;RU=A;SB=-1.085e+02;SOR=1.802;STR;VQSLOD=6.30;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,11:11:33:448,33,0 1 162774236 rs77482353 A G 219.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=53.67;MQ0=0;MQRankSum=1.531;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=0.283;SB=-4.176e+01;SOR=0.368;VQSLOD=3.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,8:13:99:248,0,160 1 162775267 rs12563263 C T 894.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.149;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.39;MQ0=0;MQRankSum=-0.106;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-0.438;SB=-4.270e+02;SOR=0.829;VQSLOD=3.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,37:71:99:923,0,889 1 162822771 rs2684878 A C 1141.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.60;SB=-2.511e+02;SOR=2.833;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:87:1170,87,0 1 163038613 rs7515900 C A 923.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.80;SB=0.00;SOR=6.593;VQSLOD=8.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:78:952,78,0 1 163038853 rs10917671 G A 2024.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.52;SB=-8.080e+02;SOR=1.852;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2053,156,0 1 163043088 rs10799897 A G 660.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.736;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.65;ReadPosRankSum=0.854;SB=-7.397e+01;SOR=0.340;VQSLOD=8.91;culprit=FS GT:AD:DP:GQ:PL 0/1:10,22:32:99:689,0,238 1 163122528 rs1354939 G C 238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-0.044;SB=-1.766e+00;SOR=1.445;VQSLOD=9.34;culprit=FS GT:AD:DP:GQ:PL 0/1:10,8:18:99:267,0,316 1 163187263 rs2814368 G A 934.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-7.997e+01;SOR=4.332;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:78:963,78,0 1 163296194 . T TAA 306.73 PASS AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.59;RPA=12,14;RU=A;SB=0.00;SOR=5.283;STR;VQSLOD=4.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:15:32:344,32,0 1 163298768 . T TA 693.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;DP=82;ExcessHet=3.0103;FS=3.538;MLEAC=1;MLEAF=0.500;MQ=59.98;MQ0=0;MQRankSum=0.549;POSITIVE_TRAIN_SITE;QD=11.01;RPA=15,16;RU=A;ReadPosRankSum=0.420;SB=-1.250e+02;SOR=0.275;STR;VQSLOD=0.054;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,38:82:99:731,0,336 1 163306370 rs2055747 C G 526.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.92;SB=0.00;SOR=5.670;VQSLOD=8.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:17:42:555,42,0 1 163307944 rs2175015 T C 641.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.17;SB=-2.431e+02;SOR=1.931;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:48:670,48,0 1 163309219 rs1509022 A T 1119.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.31;SB=-7.490e+02;SOR=0.741;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:84:1148,84,0 1 163309302 rs2999852 C T 765.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.45;SB=-2.361e+02;SOR=2.303;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:60:794,60,0 1 163315350 rs10753611 G C 528.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.84;SB=0.00;SOR=5.549;VQSLOD=8.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:557,42,0 1 164529120 rs2275558 G A 435.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.846;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.7488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=0.397;SB=-1.010e+02;SOR=0.534;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:24,17:43:99:464,0,640 1 164529471 rs2275559 G C 1101.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.422;DB;DP=82;Dels=0.01;ExcessHet=3.0103;FS=0.865;HaplotypeScore=7.8363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-0.322;SB=-6.110e+02;SOR=0.527;VQSLOD=9.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,42:81:99:1130,0,1054 1 164559536 rs1780335 A G 734.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-1.653e+02;SOR=2.833;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:763,60,0 1 164789444 rs1538488 A G 715.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-2.580e+02;SOR=1.802;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:54:744,54,0 1 164853903 rs12128036 A G 1017.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.900;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.020;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=0.273;SB=-4.110e+02;SOR=0.869;VQSLOD=6.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,37:62:99:1046,0,533 1 165173216 rs1354509 A G 3394.77 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=-1.447e+03;SOR=1.697;VQSLOD=5.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,110:110:99:3423,247,0 1 165175371 . G A 729.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.20;ReadPosRankSum=1.550;SB=-2.370e+02;SOR=0.534;VQSLOD=7.86;culprit=FS GT:AD:DP:GQ:PL 0/1:19,29:48:99:758,0,419 1 165175374 rs4656435 G A 400.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.399;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.322;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.11;ReadPosRankSum=-1.923;SB=-1.530e+02;SOR=0.473;VQSLOD=8.91;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:26,18:44:99:429,0,779 1 165180089 rs1532815 T A 838.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.497;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.118;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-1.049;SB=-4.380e+02;SOR=0.449;VQSLOD=10.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,35:68:99:867,0,848 1 165218634 rs4656440 C G 532.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.617;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.191;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=-2.334;SB=-2.901e+01;SOR=1.877;VQSLOD=4.94;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:19,20:39:99:561,0,547 1 165219029 rs6660972 A G 351.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.600;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=-1.042;SB=-1.440e+02;SOR=0.277;VQSLOD=9.31;culprit=SOR GT:AD:DP:GQ:PL 0/1:19,15:34:99:380,0,559 1 165370757 rs283690 G A 366.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.83;SB=0.00;SOR=4.804;VQSLOD=8.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:395,30,0 1 165375835 rs283698 A G 1263.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=-3.250e+02;SOR=2.554;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:93:1292,93,0 1 165375895 rs283697 A C 2096.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.30;SB=-9.430e+02;SOR=1.508;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2125,157,0 1 165376043 rs283696 T C 4426.77 PASS AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.51;SB=-2.659e+03;SOR=0.895;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,150:150:99:4455,319,0 1 165376228 rs3737003 T C 1163.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=6.880;HaplotypeScore=2.9968;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=29.09;ReadPosRankSum=1.647;SB=-2.566e+02;SOR=2.849;VQSLOD=3.71;culprit=FS GT:AD:DP:GQ:PL 1/1:1,39:40:95:1192,95,0 1 165376229 rs10800095 C G 1221.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.031;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=6.880;HaplotypeScore=2.9968;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=31.33;ReadPosRankSum=1.733;SB=-2.353e+02;SOR=2.788;VQSLOD=3.49;culprit=FS GT:AD:DP:GQ:PL 1/1:1,38:39:92:1250,92,0 1 165376233 rs10800096 G C 1279.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-2.820e+02;SOR=2.833;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:93:1308,93,0 1 165377389 rs283692 T C 798.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-1.653e+02;SOR=2.925;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:827,60,0 1 165377552 rs2134095 G A 1214.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.790;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.679;HaplotypeScore=3.7463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=1.531;SB=-7.050e+02;SOR=0.821;VQSLOD=7.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:71,52:123:99:1243,0,1830 1 165378729 rs66800417 TACAC T 1305.73 PASS AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;RPA=14,12;RU=AC;SB=-2.861e+02;SOR=1.609;STR;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:33:92:1293,92,0 1 165386158 rs2281985 T C 413.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=0.00;SOR=5.136;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:442,33,0 1 165386567 rs2281986 C T 713.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;SB=0.00;SOR=6.091;VQSLOD=8.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:742,60,0 1 165389129 rs1128977 G A 1111.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.911;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-1.086;SB=-6.110e+02;SOR=0.725;VQSLOD=8.84;culprit=FS GT:AD:DP:GQ:PL 0/1:49,45:94:99:1140,0,1460 1 165406243 rs77182452 C T 349.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.793;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-0.592;SB=-6.000e+01;SOR=0.874;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:12,14:26:99:378,0,349 1 165406313 rs77875554 T G 674.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.402;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=4.380;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.544;SB=-3.150e+02;SOR=0.283;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:25,28:53:99:703,0,763 1 165513463 rs285444 C G 153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5479;MLEAC=1;MLEAF=0.500;MQ=57.72;MQ0=0;MQRankSum=1.501;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=-2.823;SB=0.00;SOR=1.085;VQSLOD=2.93;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,6:10:74:182,0,74 1 165532586 rs12059369 C T 185.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.319;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.836;SB=-1.765e+00;SOR=2.093;VQSLOD=5.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,7:13:99:214,0,166 1 165533005 rs453717 C A 1696.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.366;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=5.106;HaplotypeScore=4.4374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=-0.314;SB=-6.150e+02;SOR=1.112;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 0/1:88,64:152:99:1725,0,2219 1 165533188 rs367199 A C 277.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.697;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.909;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=1.013;SB=-1.430e+02;SOR=0.217;VQSLOD=10.01;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,11:26:99:306,0,484 1 165601215 rs4147595 G C 449.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.60;SB=0.00;SOR=5.283;VQSLOD=8.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:478,36,0 1 165601365 rs4147596 T C 858.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.992;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-1.667;SB=-5.740e+02;SOR=0.869;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:24,35:59:99:887,0,628 1 165601466 rs9333378 G A 814.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=5.279;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=1.738;SB=-3.800e+02;SOR=1.245;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 0/1:25,32:57:99:843,0,556 1 165619424 rs9333468 G T 442.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;SB=-4.276e+01;SOR=3.767;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:471,36,0 1 165623386 rs4147604 C G 440.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.98;SB=0.00;SOR=5.136;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:469,36,0 1 165623411 rs4147605 C G 767.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.80;SB=0.00;SOR=6.091;VQSLOD=7.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:796,60,0 1 165623451 rs4147606 C T 1296.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.13;SB=-2.391e+02;SOR=3.145;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1325,99,0 1 165623693 rs4147607 G C 535.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=0.00;SOR=5.421;VQSLOD=8.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:564,42,0 1 165630475 rs7544840 C T 1334.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.22;SB=-1.691e+02;SOR=3.556;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1363,105,0 1 165630495 rs7511691 T C 1662.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=-4.420e+02;SOR=2.494;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1691,123,0 1 165630698 rs6667681 A G 1145.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.6945;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-2.221e+02;SOR=2.899;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:87:1174,87,0 1 165648559 rs4646897 T G 154.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.113;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.378;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.45;ReadPosRankSum=2.174;SB=-7.000e+01;SOR=0.197;VQSLOD=7.89;culprit=QD GT:AD:DP:GQ:PL 0/1:16,8:24:99:183,0,503 1 165648886 rs4646896 G A 461.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.924;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.706;SB=-5.100e+01;SOR=1.106;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:17,17:34:99:490,0,459 1 165648894 rs4646895 C G 508.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.886;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.54;ReadPosRankSum=-0.439;SB=-4.376e+01;SOR=0.283;VQSLOD=8.16;culprit=FS GT:AD:DP:GQ:PL 0/1:13,16:29:99:537,0,426 1 165651153 rs2882006 T A 441.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=0.00;SOR=5.283;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:470,39,0 1 165651502 rs1913844 G C 1284.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.88;SB=-5.300e+02;SOR=1.775;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:93:1313,93,0 1 165652273 rs1143659 A G 5192.77 PASS AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-3.113e+03;SOR=0.874;VQSLOD=6.83;culprit=DP GT:AD:DP:GQ:PL 1/1:0,166:167:99:5221,391,0 1 165652445 rs4233407 A G 2479.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.07;SB=-3.300e+02;SOR=3.881;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2508,184,0 1 165652540 rs34945812 GTTAA G 672.73 PASS AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.01;RPA=2,1;RU=TTAA;SB=0.00;SOR=4.977;STR;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:16:33:710,33,0 1 165664614 . T A 504.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.964;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.30;ReadPosRankSum=0.959;SB=-1.000e+02;SOR=0.922;VQSLOD=8.55;culprit=FS GT:AD:DP:GQ:PL 0/1:15,18:33:99:533,0,410 1 165667512 rs4646883 T C 60.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.52;ReadPosRankSum=0.679;SB=0.00;SOR=0.180;VQSLOD=9.70;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:89:89,0,280 1 165667548 rs4646882 G C 208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=7.659;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-0.640;SB=-6.997e+01;SOR=0.041;VQSLOD=8.08;culprit=FS GT:AD:DP:GQ:PL 0/1:12,9:21:99:237,0,415 1 165721223 rs7512095 T C 664.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.10;SB=0.00;SOR=5.784;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:693,51,0 1 165727274 rs71678704 CTCT C 538.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;DB;DP=24;ExcessHet=3.0103;FS=1.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.45;RPA=2,1;RU=TCT;ReadPosRankSum=0.900;SB=-2.530e+02;SOR=0.591;STR;VQSLOD=5.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,11:24:99:576,0,707 1 165737704 rs2790053 C G 2437.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.1092;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.39;SB=-1.164e+03;SOR=1.032;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2466,193,0 1 165859630 rs477033 C G 5142.77 PASS AC=2;AF=1.00;AN=2;DB;DP=169;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.7140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-2.604e+03;SOR=1.270;VQSLOD=5.94;culprit=DP GT:AD:DP:GQ:PL 1/1:0,167:169:99:5171,376,0 1 165865300 rs4656465 G A 810.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-3.976e+01;SOR=4.804;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:63:839,63,0 1 165865478 rs11553301 G A 2233.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.585;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=3.483;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.644;SB=-1.332e+03;SOR=0.833;VQSLOD=6.81;culprit=DP GT:AD:DP:GQ:PL 0/1:85,88:173:99:2262,0,2152 1 166030079 rs36122465 A AAG 821.73 PASS AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.06;RPA=1,2;RU=AG;SB=-4.876e+01;SOR=4.294;STR;VQSLOD=5.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:20:51:859,51,0 1 166124134 rs896402 A G 2607.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=-1.502e+03;SOR=1.065;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2636,187,0 1 166245037 rs1823620 A G 254.80 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.48;SB=-1.811e+02;SOR=0.693;VQSLOD=4.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:21:283,21,0 1 166245170 rs3813991 G C 701.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.77;SB=-7.497e+01;SOR=3.611;VQSLOD=5.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:730,54,0 1 166246419 rs2488896 A G 328.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.40;SB=-1.821e+02;SOR=0.693;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:357,27,0 1 166591043 rs530513 T C 472.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.822;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=0.049;SB=-6.901e+01;SOR=0.473;VQSLOD=10.12;culprit=FS GT:AD:DP:GQ:PL 0/1:12,15:27:99:501,0,362 1 166591271 rs17472444 T C 811.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.207;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=4.163;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.038;SB=-3.140e+02;SOR=1.425;VQSLOD=7.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,29:51:99:840,0,528 1 166765794 rs858796 T C 390.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.05;SB=-2.590e+02;SOR=0.818;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:30:419,30,0 1 166826773 rs6675153 C T 392.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.019;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=-0.849;SB=-6.300e+01;SOR=0.874;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:12,14:26:99:421,0,352 1 166827224 . G A 129.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.6569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.98;ReadPosRankSum=0.110;SB=-1.765e+00;SOR=1.911;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:158,0,157 1 166831404 rs2075947 A C 709.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=-0.695;SB=-3.876e+01;SOR=0.262;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:20,23:43:99:738,0,657 1 166833199 rs2272793 C A 560.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.951;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=4.940;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.50;ReadPosRankSum=0.039;SB=-4.440e+02;SOR=0.314;VQSLOD=9.11;culprit=QD GT:AD:DP:GQ:PL 0/1:37,29:66:99:589,0,1040 1 166892046 . T C 2204.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.108;DP=169;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.05;ReadPosRankSum=0.536;SB=-1.116e+03;SOR=0.684;VQSLOD=6.24;culprit=DP GT:AD:DP:GQ:PL 0/1:86,83:169:99:2233,0,2118 1 166925806 rs2075981 A C 253.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.15;ReadPosRankSum=0.654;SB=0.00;SOR=1.445;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:99:282,0,118 1 167082869 rs12122365 G A 523.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.700;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=8.845;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=0.468;SB=-4.900e+01;SOR=2.441;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 0/1:20,18:38:99:552,0,545 1 167088473 rs1410244 C A 855.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.097;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.287;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=-1.822;SB=-2.550e+02;SOR=0.456;VQSLOD=9.83;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:22,33:55:99:884,0,620 1 167094889 rs34184501 GA G 223.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DB;DP=21;ExcessHet=3.0103;FS=5.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=2.464;SB=-1.240e+02;SOR=0.080;VQSLOD=8.82;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:14,7:21:99:261,0,575 1 167094908 rs12118751 G T 338.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.482;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=1.027;SB=-9.900e+01;SOR=0.941;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:15,14:29:99:367,0,492 1 167095163 rs267745 G C 1042.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.697;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.53;ReadPosRankSum=-1.288;SB=-6.200e+02;SOR=0.690;VQSLOD=8.42;culprit=FS GT:AD:DP:GQ:PL 0/1:59,40:99:99:1071,0,1660 1 167097567 rs61748784 G A 1580.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.865;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.763;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=-0.361;SB=-6.630e+02;SOR=0.547;VQSLOD=9.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,52:104:99:1609,0,1569 1 167097739 rs2281959 C A 747.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.279;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-0.495;SB=-2.970e+02;SOR=0.656;VQSLOD=10.14;culprit=FS GT:AD:DP:GQ:PL 0/1:25,27:52:99:776,0,735 1 167353258 rs35617253 AT A 867.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.439;DB;DP=39;ExcessHet=3.0103;FS=5.149;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.10;RPA=10,9;RU=T;ReadPosRankSum=0.771;SB=-2.740e+02;SOR=1.764;STR;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:1,35:39:99:905,100,0 1 167367193 rs7524019 C T 814.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.95;SB=-1.443e+02;SOR=2.925;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:63:843,63,0 1 167382374 rs10753757 A C 2134.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.24;SB=-9.490e+02;SOR=1.516;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2163,154,0 1 167382399 rs67647055 AGTGT A 2148.73 PASS AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.23;RPA=13,11;RU=GT;SB=-3.731e+02;SOR=3.086;STR;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:56:99:2186,111,0 1 167385178 . G GA 224.50 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.803;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;MQRankSum=0.817;POSITIVE_TRAIN_SITE;QD=11.22;RPA=15,16;RU=A;ReadPosRankSum=0.284;SB=-9.512e+01;SOR=1.244;STR;VQSLOD=3.46;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:4,16:24:3:260,3,0 1 167385324 . TA T 377.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.818;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.89;RPA=19,18;RU=A;ReadPosRankSum=-1.612;SB=-1.170e+02;SOR=1.061;STR;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 1/1:1,19:27:30:332,30,0 1 167400666 rs34484379 TACCTGCACC T 894.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.85;ReadPosRankSum=1.509;SB=0.00;SOR=1.445;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:99:932,0,452 1 167404078 rs3108156 G A 1280.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.25;SB=-8.340e+02;SOR=0.919;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:93:1309,93,0 1 167407686 rs2462553 T C 564.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.05;SB=0.00;SOR=5.549;VQSLOD=7.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:593,45,0 1 167408073 rs2258497 C A 929.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;SB=0.00;SOR=6.518;VQSLOD=8.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:75:958,75,0 1 167408670 rs840016 C T 1502.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-5.920e+02;SOR=1.802;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1531,114,0 1 167487586 rs35864197 C G 856.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.370;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=4.187;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=1.092;SB=-3.170e+02;SOR=0.273;VQSLOD=9.54;culprit=SOR GT:AD:DP:GQ:PL 0/1:35,32:67:99:885,0,1028 1 167515132 rs10918711 C T 529.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.30;SB=0.00;SOR=5.421;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:558,42,0 1 167673695 rs2862866 A C 478.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.94;SB=0.00;SOR=5.283;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:507,39,0 1 167673738 . T TA 603.73 PASS AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.44;RPA=8,9;RU=A;SB=-3.377e+01;SOR=4.804;STR;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:23:66:641,66,0 1 167674103 . C T 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.149;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.25;ReadPosRankSum=-0.661;SB=0.00;SOR=1.022;VQSLOD=8.68;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:19:99:375,0,237 1 167734793 rs763283 C T 1428.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.450;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=1.894;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=-1.870;SB=-5.880e+02;SOR=0.488;VQSLOD=9.73;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:36,54:90:99:1457,0,1103 1 167741372 rs79359480 G A 150.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.112;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.54;ReadPosRankSum=-0.571;SB=-8.100e+01;SOR=0.473;VQSLOD=9.21;culprit=QD GT:AD:DP:GQ:PL 0/1:11,9:20:99:179,0,327 1 167778843 rs3213588 G A 167.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=1.337;SB=0.00;SOR=0.473;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:196,0,290 1 167787265 rs12060498 C T 143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=-1.861;SB=-7.397e+01;SOR=0.048;VQSLOD=8.70;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:172,0,271 1 167792356 rs72697797 G A 421.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.857;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.456;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-0.486;SB=-1.220e+02;SOR=1.157;VQSLOD=7.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,15:34:99:450,0,466 1 167793670 rs1476074 C T 489.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.344;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.435;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=0.328;SB=-1.710e+02;SOR=0.269;VQSLOD=9.56;culprit=SOR GT:AD:DP:GQ:PL 0/1:21,22:43:99:518,0,638 1 167806647 rs1034463 T A 827.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.212;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=3.535;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=-1.772;SB=-2.980e+02;SOR=1.262;VQSLOD=6.90;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:32,34:66:99:856,0,792 1 167806696 rs1034464 T C 515.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.224;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=8.346;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=0.396;SB=-8.500e+01;SOR=2.343;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 0/1:18,17:35:99:544,0,411 1 167815167 rs2269678 T C 1517.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.022;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-1.164;SB=-9.300e+02;SOR=0.648;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:69,61:130:99:1546,0,1954 1 167815610 rs2269679 C A 483.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.736;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.68;ReadPosRankSum=0.546;SB=-3.300e+01;SOR=0.765;VQSLOD=10.39;culprit=FS GT:AD:DP:GQ:PL 0/1:14,15:29:99:512,0,452 1 167817639 rs203795 A G 895.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.746;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.61;ReadPosRankSum=0.768;SB=-6.000e+02;SOR=0.591;VQSLOD=9.08;culprit=QD GT:AD:DP:GQ:PL 0/1:63,41:104:99:924,0,1536 1 167823512 rs3738236 T C 267.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.750;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=-0.824;SB=-5.800e+01;SOR=1.214;VQSLOD=7.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,11:28:99:296,0,468 1 167825485 rs2071921 T C 735.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=7.772;HaplotypeScore=3.6079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=-0.620;SB=-3.970e+02;SOR=0.936;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 0/1:46,32:78:99:764,0,1341 1 167825718 rs7537851 C T 139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=0.508;SB=0.00;SOR=0.693;VQSLOD=10.19;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:168,0,152 1 167839578 rs67878347 G A 365.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.669;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.14;ReadPosRankSum=1.328;SB=-1.580e+02;SOR=0.772;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 0/1:25,15:40:99:394,0,642 1 167844553 rs203826 C A 126.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=6.117;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.46;ReadPosRankSum=-0.264;SB=-1.352e-01;SOR=3.056;VQSLOD=5.24;culprit=QD GT:AD:DP:GQ:PL 0/1:12,5:17:99:155,0,321 1 167844582 rs203827 C G 95.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=5.611;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.38;ReadPosRankSum=-0.131;SB=-2.657e-01;SOR=2.376;VQSLOD=5.95;culprit=QD GT:AD:DP:GQ:PL 0/1:11,4:15:99:124,0,282 1 167849318 rs203847 A G 1066.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.83;SB=-4.000e+02;SOR=2.012;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:84:1095,84,0 1 167849327 rs203848 G A 402.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.139;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.971;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=0.436;SB=-1.090e+02;SOR=1.312;VQSLOD=7.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,17:42:99:431,0,636 1 167849414 rs203849 A G 1485.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2145;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.77;SB=-6.940e+02;SOR=0.990;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1514,114,0 1 167849658 rs76779157 C G 296.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.921;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.006;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.73;ReadPosRankSum=-0.180;SB=-2.601e+01;SOR=1.609;VQSLOD=5.29;culprit=QD GT:AD:DP:GQ:PL 0/1:22,12:34:99:325,0,596 1 167865740 rs57419373 G A 874.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.059;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=5.311;HaplotypeScore=2.9461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.93;ReadPosRankSum=-0.621;SB=-5.180e+02;SOR=0.314;VQSLOD=8.48;culprit=FS GT:AD:DP:GQ:PL 0/1:59,39:98:99:903,0,1762 1 167865871 rs16859886 G A 1179.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.031;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=1.618;HaplotypeScore=2.8495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-0.065;SB=-5.990e+02;SOR=0.517;VQSLOD=9.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,49:111:99:1208,0,1720 1 167871297 rs71735758 GA G 96.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.55;RPA=14,13;RU=A;ReadPosRankSum=-0.950;SB=-2.901e+01;SOR=0.754;STR;VQSLOD=8.07;culprit=QD GT:AD:DP:GQ:PL 0/1:27,11:41:99:134,0,556 1 167873320 . CT C 38.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.87;RPA=23,22;RU=T;ReadPosRankSum=0.100;SB=0.00;SOR=0.693;STR;VQSLOD=8.91;culprit=QD GT:AD:DP:GQ:PL 0/1:5,5:19:76:76,0,91 1 167887416 rs1050037 C T 451.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.691;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=4.301;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=0.764;SB=-1.980e+02;SOR=0.180;VQSLOD=10.21;culprit=SOR GT:AD:DP:GQ:PL 0/1:9,19:28:99:480,0,261 1 167887436 rs1050036 A C 584.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.552;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=1.721;SB=-2.230e+02;SOR=0.504;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:14,22:36:99:613,0,349 1 167887642 rs10918798 C T 163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.748;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.831;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.19;ReadPosRankSum=-1.269;SB=-9.732e-01;SOR=1.609;VQSLOD=5.89;culprit=QD GT:AD:DP:GQ:PL 0/1:13,7:20:99:192,0,437 1 167893759 rs9618 G A 1134.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.10;SB=-7.100e+02;SOR=0.850;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:84:1163,84,0 1 167906239 rs203788 A C 471.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-1.673e+02;SOR=1.765;VQSLOD=4.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:500,36,0 1 167921190 rs73024140 G T 811.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.841;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.194;HaplotypeScore=1.8305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=1.055;SB=-2.360e+02;SOR=0.968;VQSLOD=7.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,29:53:99:840,0,663 1 167973648 rs60142550 T C 263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.98;ReadPosRankSum=1.111;SB=-4.376e+01;SOR=0.693;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 0/1:3,8:11:83:292,0,83 1 167973976 rs1060041 C T 1658.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.852;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=2.065;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-0.188;SB=-9.860e+02;SOR=0.527;VQSLOD=7.92;culprit=DP GT:AD:DP:GQ:PL 0/1:86,67:153:99:1687,0,2404 1 167984917 rs73026177 G A 395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.83;ReadPosRankSum=2.903;SB=0.00;SOR=1.609;VQSLOD=7.89;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:6,13:19:99:424,0,184 1 167985326 rs3831959 TG T 1610.73 PASS AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;RPA=3,2;RU=G;SB=-6.860e+02;SOR=1.096;STR;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:40:99:1648,117,0 1 167988529 rs6700210 A G 46.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.90;ReadPosRankSum=0.970;SB=0.00;SOR=0.148;VQSLOD=8.79;culprit=QD GT:AD:DP:GQ:PL 0/1:9,3:12:75:75,0,308 1 167988590 rs73026184 A T 711.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.73;ReadPosRankSum=1.405;SB=-4.176e+01;SOR=0.416;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 0/1:15,23:38:99:740,0,464 1 167988653 rs202255 A G 1211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.505;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-1.371;SB=-4.250e+02;SOR=0.774;VQSLOD=7.74;culprit=FS GT:AD:DP:GQ:PL 0/1:60,49:109:99:1240,0,1618 1 167992344 rs201541 T A 1302.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=-3.120e+02;SOR=2.726;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1331,99,0 1 168035104 rs380095 G C 671.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.69;SB=0.00;SOR=5.892;VQSLOD=8.67;culprit=DP GT:AD:DP:GQ:PL 1/1:0,18:18:54:700,54,0 1 168056724 rs275143 A G 745.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.398;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.311;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=1.023;SB=-2.730e+02;SOR=0.460;VQSLOD=9.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,29:48:99:774,0,529 1 168059866 rs275149 A G 1369.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.763;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=0.376;SB=-7.490e+02;SOR=0.565;VQSLOD=9.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,55:98:99:1398,0,1116 1 168066659 rs7515429 A G 410.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=-1.235;SB=-2.560e+02;SOR=0.765;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:11,16:27:99:439,0,275 1 168073601 rs2294817 C A 1334.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.287;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=1.309;SB=-1.820e+02;SOR=0.809;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 0/1:48,46:94:99:1363,0,1448 1 168074145 rs6427119 G A 817.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.957;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.645;SB=-2.330e+02;SOR=0.287;VQSLOD=10.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,30:59:99:846,0,862 1 168106716 rs6664903 T C 431.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.776;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.393;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=0.472;SB=-1.350e+02;SOR=1.577;VQSLOD=6.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,17:32:99:460,0,342 1 168165767 . CT C 1005.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.31;RPA=13,12;RU=T;ReadPosRankSum=-1.660;SB=-3.140e+02;SOR=0.715;STR;VQSLOD=7.96;culprit=QD GT:AD:DP:GQ:PL 0/1:60,61:123:99:1043,0,1257 1 168169345 rs145150142 G A 376.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.131;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=1.086;SB=-5.800e+01;SOR=1.292;VQSLOD=6.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,14:34:99:405,0,592 1 168200733 rs11588504 T C 352.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.785;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=1.552;SB=-1.400e+02;SOR=0.892;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 0/1:15,14:29:99:381,0,392 1 168206118 rs55947108 GTTTAA G 1366.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQ0=0;MQRankSum=0.875;POSITIVE_TRAIN_SITE;QD=23.43;RPA=2,1;RU=TTTAA;ReadPosRankSum=0.960;SB=-2.440e+02;SOR=0.525;STR;VQSLOD=3.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,21:40:99:1404,0,917 1 168208308 rs12142742 T C 464.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.088;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.143;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=1.265;SB=-2.580e+02;SOR=0.636;VQSLOD=6.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,19:48:99:493,0,797 1 168262289 rs7543224 A G 274.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.242;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=5.798;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=2.025;SB=-2.657e-01;SOR=2.621;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 0/1:17,9:26:99:303,0,449 1 168262299 rs7520743 C T 328.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.102;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=2.051;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=0.934;SB=-2.402e+01;SOR=1.508;VQSLOD=6.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,12:31:99:357,0,540 1 168274201 rs4656579 G A 3613.77 PASS AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.63;SB=-2.029e+03;SOR=0.955;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,118:118:99:3642,268,0 1 168278264 rs1883148 G A 347.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.907;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.906;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-0.299;SB=-5.600e+01;SOR=1.473;VQSLOD=7.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,12:25:99:376,0,316 1 168282261 rs3885717 T A 931.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.903;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=1.953;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=0.044;SB=-5.410e+02;SOR=0.457;VQSLOD=9.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,37:73:99:960,0,977 1 168419212 rs77828460 G A 107.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.498;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.34;ReadPosRankSum=-1.372;SB=0.00;SOR=0.193;VQSLOD=8.79;culprit=QD GT:AD:DP:GQ:PL 0/1:12,5:17:99:136,0,442 1 168420058 rs60596431 G C 93.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=6.113;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.70;ReadPosRankSum=0.991;SB=-1.807e+01;SOR=1.447;VQSLOD=5.05;culprit=QD GT:AD:DP:GQ:PL 0/1:10,4:14:99:122,0,365 1 168513243 rs1933114 G A 1281.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.257;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.852;HaplotypeScore=2.7145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-0.840;SB=-4.790e+02;SOR=0.813;VQSLOD=7.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,49:91:99:1310,0,1065 1 168513346 rs3820411 A T 339.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=-0.539;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=-0.453;SB=0.00;SOR=1.609;VQSLOD=3.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,11:16:99:368,0,134 1 168545684 rs59830357 G GA 384.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.399;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQ0=0;MQRankSum=-0.401;POSITIVE_TRAIN_SITE;QD=21.37;RPA=3,4;RU=A;ReadPosRankSum=0.106;SB=0.00;SOR=2.303;STR;VQSLOD=2.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,14:18:79:422,0,79 1 168545692 rs35735040 CTTT C 314.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQ0=0;MQRankSum=0.000;QD=18.51;RPA=19,16;RU=T;ReadPosRankSum=-0.738;SB=0.00;SOR=1.739;STR;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 0/1:5,12:18:99:352,0,100 1 168545758 rs28433337 C T 521.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.8335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-1.163;SB=-2.004e+01;SOR=0.985;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 0/1:23,19:45:99:550,0,660 1 168549200 . A T 145.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.384;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.46;MQ0=0;MQRankSum=-3.783;QD=8.10;ReadPosRankSum=-0.817;SB=0.00;SOR=0.368;VQSLOD=1.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,7:18:99:174,0,377 1 168549234 rs376339731 T C 299.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.090;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=56.01;MQ0=0;MQRankSum=-4.909;QD=7.89;ReadPosRankSum=0.173;SB=0.00;SOR=0.208;VQSLOD=0.916;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,12:38:99:328,0,881 1 168549254 rs5024578 A G 356.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.385;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9993;MLEAC=1;MLEAF=0.500;MQ=57.25;MQ0=0;MQRankSum=-5.587;POSITIVE_TRAIN_SITE;QD=5.66;ReadPosRankSum=0.813;SB=-5.700e+01;SOR=0.604;VQSLOD=1.51;culprit=QD GT:AD:DP:GQ:PL 0/1:46,17:63:99:385,0,1432 1 168665747 rs71685037 C CT 1179.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.806;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.03;ReadPosRankSum=-0.283;SB=-4.810e+02;SOR=0.648;VQSLOD=8.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,28:62:99:1217,0,1283 1 168670140 rs113747482 TGTGTGG T 1734.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.85;MQ0=0;MQRankSum=1.317;QD=22.83;ReadPosRankSum=0.739;SB=-1.970e+02;SOR=0.793;VQSLOD=2.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,25:38:99:1772,0,1034 1 168698173 rs1052591 C T 1143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.877;HaplotypeScore=5.8877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=-1.276;SB=-4.370e+02;SOR=0.841;VQSLOD=7.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,42:84:99:1172,0,1061 1 169079805 . CT C 40.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.31;MQ0=0;MQRankSum=1.142;POSITIVE_TRAIN_SITE;QD=2.04;RPA=19,18;RU=T;ReadPosRankSum=0.596;SB=-3.539e+00;SOR=0.569;STR;VQSLOD=3.06;culprit=QD GT:AD:DP:GQ:PL 0/1:13,7:20:78:78,0,210 1 169080837 rs1200138 C T 965.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-1.205e+02;SOR=3.690;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:75:994,75,0 1 169216412 rs2040445 C G 367.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SB=-8.297e+01;SOR=2.494;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:396,30,0 1 169272451 rs10800427 A T 355.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-1.503e+02;SOR=1.022;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:384,30,0 1 169272453 rs10800428 G A 365.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-1.961e+02;SOR=1.022;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:394,30,0 1 169364479 rs17576071 T G 491.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.270;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.221;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.64;ReadPosRankSum=-1.226;SB=-1.520e+02;SOR=1.022;VQSLOD=6.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,20:51:99:520,0,819 1 169391134 . C T 797.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.034;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.25;ReadPosRankSum=0.150;SB=-5.120e+02;SOR=0.816;VQSLOD=5.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,33:56:99:826,0,599 1 169394226 rs10919168 A G 381.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=-0.253;SB=-2.160e+02;SOR=0.818;VQSLOD=9.64;culprit=QD GT:AD:DP:GQ:PL 0/1:30,15:45:99:410,0,795 1 169435027 rs2678166 C T 401.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=-3.976e+01;SOR=3.611;VQSLOD=7.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:430,33,0 1 169446183 rs1983546 A G 246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.005;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-0.151;SB=-3.876e+01;SOR=0.188;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:275,0,341 1 169455008 rs2072757 G A 361.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.067;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=-1.002;SB=-7.997e+01;SOR=0.148;VQSLOD=9.36;culprit=SOR GT:AD:DP:GQ:PL 0/1:9,13:22:99:390,0,299 1 169455435 rs2056926 G C 1313.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=1.686;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=0.139;SB=-5.850e+02;SOR=0.923;VQSLOD=7.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,51:98:99:1342,0,1320 1 169484552 rs3820060 T G 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-1.158;SB=0.00;SOR=0.551;VQSLOD=10.04;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:166,0,205 1 169489512 rs2213866 A G 567.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.514;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.03;ReadPosRankSum=-0.978;SB=-7.100e+01;SOR=0.950;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:9,18:27:99:596,0,245 1 169489585 rs2213867 T C 1022.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.723;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.092;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=0.108;SB=-3.620e+02;SOR=0.963;VQSLOD=7.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,37:62:99:1051,0,585 1 169492676 rs9332643 C T 888.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.256;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=10.834;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=-0.070;SB=-4.400e+01;SOR=2.573;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 0/1:32,30:62:99:917,0,890 1 169494196 rs2301515 C T 431.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.174;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=1.538;SB=-8.500e+01;SOR=0.864;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:19,17:36:99:460,0,538 1 169498834 rs6009 T C 894.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.89;SB=-7.497e+01;SOR=4.174;VQSLOD=5.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:923,69,0 1 169498975 rs6030 T C 1561.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.594;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=4.351;HaplotypeScore=2.6221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=0.382;SB=-1.031e+03;SOR=0.409;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:63,60:123:99:1590,0,1573 1 169499190 rs2157581 A G 163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.498;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=-0.050;SB=0.00;SOR=0.293;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:11,6:17:99:192,0,373 1 169499951 rs9332620 C T 1121.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.225;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=1.879;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.176;SB=-4.260e+02;SOR=0.950;VQSLOD=8.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,40:82:99:1150,0,1098 1 169500210 rs6010 T C 843.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.789;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.032;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=2.231;SB=-3.460e+02;SOR=0.914;VQSLOD=6.59;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:27,31:58:99:872,0,681 1 169505557 rs58033656 CT C 58.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;DB;DP=21;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.80;RPA=12,11;RU=T;ReadPosRankSum=-0.663;SB=-2.877e+01;SOR=0.035;STR;VQSLOD=6.24;culprit=QD GT:AD:DP:GQ:PL 0/1:15,6:21:96:96,0,349 1 169510118 rs9332608 G A 1446.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=1.413;SB=-7.940e+02;SOR=0.681;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:64,53:117:99:1475,0,1713 1 169510524 rs1800594 A G 2141.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.552;DB;DP=169;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=29.6189;MLEAC=1;MLEAF=0.500;MQ=58.67;MQ0=1;MQRankSum=-2.485;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-0.977;SB=-1.162e+03;SOR=0.706;VQSLOD=0.031;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:79,87:169:99:2170,0,2085 1 169511555 rs6032 T C 2190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.426;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=0.570;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=1.188;SB=-9.900e+02;SOR=0.773;VQSLOD=7.63;culprit=DP GT:AD:DP:GQ:PL 0/1:93,80:173:99:2219,0,2567 1 169511734 rs4525 T C 2977.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;DB;DP=225;Dels=0.00;ExcessHet=3.0103;FS=0.484;HaplotypeScore=2.7547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-0.840;SB=-1.577e+03;SOR=0.748;VQSLOD=6.54;culprit=DP GT:AD:DP:GQ:PL 0/1:113,112:225:99:3006,0,3142 1 169511755 rs4524 T C 3338.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=11.263;DB;DP=230;Dels=0.00;ExcessHet=3.0103;FS=0.482;HaplotypeScore=1.9978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=-1.802;SB=-1.963e+03;SOR=0.760;VQSLOD=6.08;culprit=DP GT:AD:DP:GQ:PL 0/1:112,118:230:99:3367,0,2946 1 169512027 rs6021 T C 1499.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.755;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=0.324;SB=-8.730e+02;SOR=0.891;VQSLOD=7.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,58:102:99:1528,0,1214 1 169512093 rs6017 A G 1201.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.546;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=2.855;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=0.128;SB=-6.360e+02;SOR=1.038;VQSLOD=7.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,45:85:99:1230,0,1002 1 169512120 rs6016 G A 908.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.458;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.861;HaplotypeScore=2.8515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=1.122;SB=-4.290e+02;SOR=0.930;VQSLOD=7.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,36:81:99:937,0,1109 1 169512497 rs2239851 C A 429.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.981;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=1.034;SB=-1.300e+02;SOR=0.846;VQSLOD=9.92;culprit=FS GT:AD:DP:GQ:PL 0/1:22,17:39:99:458,0,590 1 169512524 rs2239852 C T 358.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.101;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=1.434;SB=-9.300e+01;SOR=0.910;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:20,15:35:99:387,0,540 1 169512562 rs6675244 T C 322.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.885;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=-1.058;SB=-3.101e+01;SOR=0.602;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:11,10:21:99:351,0,293 1 169512594 rs6662593 G A 160.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-1.543;SB=0.00;SOR=0.473;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:189,0,285 1 169513436 rs9287092 C A 498.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=-7.997e+01;SOR=3.126;VQSLOD=4.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:527,39,0 1 169515874 rs13306345 T A 1453.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.04;SB=-2.630e+02;SOR=3.160;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1482,111,0 1 169515916 rs13306344 G A 750.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=0.00;SOR=6.184;VQSLOD=8.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:779,63,0 1 169515936 rs79186925 T C 519.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.65;SB=0.00;SOR=5.549;VQSLOD=7.97;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,15:15:45:548,45,0 1 169518872 rs55717622 CA C 230.92 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.43;RPA=13,12;RU=A;ReadPosRankSum=1.193;SB=0.00;SOR=3.258;STR;VQSLOD=5.31;culprit=FS GT:AD:DP:GQ:PL 0/1:2,14:16:5:267,0,5 1 169519049 rs6025 T C 4150.77 PASS AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-1.898e+03;SOR=1.256;VQSLOD=5.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,135:135:99:4179,304,0 1 169525766 rs2239853 T C 533.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.456;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=0.462;SB=-3.101e+01;SOR=0.638;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:18,17:35:99:562,0,597 1 169525808 rs2239854 G A 792.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.578;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=4.153;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=-0.404;SB=-3.130e+02;SOR=0.289;VQSLOD=10.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,32:66:99:821,0,1062 1 169551682 rs6028 T C 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.043;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=1.292;SB=-1.040e+02;SOR=1.508;VQSLOD=6.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,11:20:99:295,0,211 1 169560727 . T TA 53.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.69;RPA=12,13;RU=A;ReadPosRankSum=1.032;SB=-1.611e+01;SOR=0.693;STR;VQSLOD=8.19;culprit=QD GT:AD:DP:GQ:PL 0/1:14,6:24:91:91,0,301 1 169564167 rs742127 G C 269.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.917;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=1.104;SB=-9.732e-01;SOR=1.721;VQSLOD=5.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,9:24:99:298,0,468 1 169566313 rs6127 C T 1220.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.794;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=1.612;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=60.10;MQ0=0;MQRankSum=1.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=0.816;SB=-7.860e+02;SOR=0.478;VQSLOD=0.245;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,53:104:99:1249,0,1444 1 169580972 rs61535831 C CAT 620.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.40;MQ0=0;MQRankSum=1.434;POSITIVE_TRAIN_SITE;QD=28.22;ReadPosRankSum=0.000;SB=-4.900e+01;SOR=1.402;VQSLOD=3.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,14:23:99:658,0,356 1 169582132 rs3917722 T A 1218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.312;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=0.405;SB=-4.160e+02;SOR=0.750;VQSLOD=8.40;culprit=FS GT:AD:DP:GQ:PL 0/1:40,45:85:99:1247,0,1122 1 169599254 rs732314 T C 634.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.904;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.993;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=2.018;SB=-4.000e+02;SOR=0.512;VQSLOD=9.17;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:33,29:62:99:663,0,937 1 169672343 rs4987314 C T 196.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=0.637;SB=0.00;SOR=0.425;VQSLOD=10.16;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:225,0,338 1 169673838 rs2229569 G A 887.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=1.063;HaplotypeScore=1.9465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.270;SB=-3.310e+02;SOR=0.392;VQSLOD=9.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,34:67:99:916,0,913 1 169677709 rs1051091 A G 1564.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.889;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=-0.636;SB=-9.700e+02;SOR=0.650;VQSLOD=7.99;culprit=FS GT:AD:DP:GQ:PL 0/1:89,63:152:99:1593,0,2270 1 169678024 rs4987285 T C 723.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.448;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-0.828;SB=-1.360e+02;SOR=0.527;VQSLOD=10.26;culprit=FS GT:AD:DP:GQ:PL 0/1:27,23:50:99:752,0,788 1 169679472 rs371208566 G GCT 862.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;DB;DP=47;ExcessHet=3.0103;FS=3.405;MLEAC=1;MLEAF=0.500;MQ=60.23;MQ0=0;MQRankSum=1.135;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.76;RPA=2,3;RU=CT;ReadPosRankSum=-0.861;SB=-5.576e+01;SOR=0.151;STR;VQSLOD=0.518;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,21:47:99:900,0,1120 1 169694918 rs5356 A G 1223.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.706;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=1.498;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=0.028;SB=-7.280e+02;SOR=0.885;VQSLOD=7.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:65,51:116:99:1252,0,1593 1 169695110 rs3917432 T A 395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.957;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=0.702;SB=-4.176e+01;SOR=0.352;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:9,13:22:99:424,0,271 1 169695984 rs3917428 G A 1229.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.197;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=2.473;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-0.038;SB=-6.210e+02;SOR=0.984;VQSLOD=7.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,52:112:99:1258,0,1751 1 169696946 rs5368 G A 531.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.801;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=2.153;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.00;ReadPosRankSum=-0.503;SB=-1.960e+02;SOR=1.012;VQSLOD=6.61;culprit=QD GT:AD:DP:GQ:PL 0/1:52,24:76:99:560,0,1551 1 169697444 rs1076637 C T 958.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.05;SB=-3.760e+02;SOR=1.751;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:72:987,72,0 1 169698825 rs1534904 T G 3186.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-1.758e+03;SOR=0.914;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:3215,232,0 1 169699466 rs60426343 CA C 1235.73 PASS AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.74;RPA=10,9;RU=A;SB=-2.250e+02;SOR=3.080;STR;VQSLOD=4.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:49:99:1273,144,0 1 169702705 rs932307 G A 2973.77 PASS AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-1.891e+03;SOR=0.773;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:102:99:3002,223,0 1 169764568 rs3766132 C G 468.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-2.001e+02;SOR=1.473;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:497,36,0 1 169768033 rs6680938 T C 1383.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.59;SB=-1.971e+02;SOR=3.611;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1412,105,0 1 169768080 rs6668114 C A 2251.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-1.101e+03;SOR=1.319;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2280,166,0 1 169773160 rs3766138 T C 941.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.511;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=3.698;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=-1.677;SB=-5.800e+01;SOR=1.666;VQSLOD=5.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,30:62:99:970,0,860 1 169773317 rs11590604 G A 2101.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.410;DB;DP=185;Dels=0.00;ExcessHet=3.0103;FS=2.563;HaplotypeScore=3.5142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=0.640;SB=-1.090e+03;SOR=0.939;VQSLOD=7.08;culprit=DP GT:AD:DP:GQ:PL 0/1:99,86:185:99:2130,0,2664 1 169777169 rs34657513 T C 688.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.338;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.13;ReadPosRankSum=0.099;SB=-9.000e+01;SOR=1.002;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:13,23:36:99:717,0,356 1 169800062 rs10489175 C T 408.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.605;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=0.364;SB=0.00;SOR=0.627;VQSLOD=8.27;culprit=FS GT:AD:DP:GQ:PL 0/1:14,13:27:99:437,0,412 1 169812765 rs3062271 ATTC A 892.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQ0=0;MQRankSum=1.269;POSITIVE_TRAIN_SITE;QD=28.80;ReadPosRankSum=-0.481;SB=-1.680e+02;SOR=0.693;VQSLOD=3.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,18:31:99:930,0,724 1 169819605 rs6664099 A G 859.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.27;SB=-1.025e+02;SOR=3.442;VQSLOD=5.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:69:888,69,0 1 169821135 rs16862714 C T 854.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.213;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=3.058;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=0.132;SB=-5.240e+02;SOR=0.383;VQSLOD=9.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,39:83:99:883,0,1282 1 169822140 . A AGGCAGAACT 825.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.19;RPA=1,2;RU=GGCAGAACT;ReadPosRankSum=-0.133;SB=-2.150e+02;SOR=0.627;STR;VQSLOD=8.45;culprit=FS GT:AD:DP:GQ:PL 0/1:19,8:32:99:863,0,1869 1 169823296 rs71833325 G GCTTGA 1890.73 PASS AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.01;RPA=2,3;RU=CTTGA;SB=0.00;SOR=6.518;STR;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:75:1928,75,0 1 169823718 . T C 4921.77 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.76;SB=-2.879e+03;SOR=0.941;VQSLOD=5.03;culprit=DP GT:AD:DP:GQ:PL 1/1:0,160:160:99:4950,373,0 1 169831993 rs7525259 A G 728.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.69;SB=-2.091e+02;SOR=2.400;VQSLOD=7.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:54:757,54,0 1 169833822 rs1883436 T C 410.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-7.497e+01;SOR=2.985;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:439,36,0 1 169838016 rs2272914 G A 469.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.619;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.37;ReadPosRankSum=-0.623;SB=-3.377e+01;SOR=0.765;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:6,15:21:99:498,0,190 1 169847940 rs151037129 G A 606.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.351;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.298;HaplotypeScore=3.6109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.79;ReadPosRankSum=-0.531;SB=-2.740e+02;SOR=0.407;VQSLOD=8.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,24:44:99:635,0,563 1 169890933 rs518928 A G 1764.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;SB=-5.340e+02;SOR=2.345;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1793,129,0 1 169941761 rs511443 A T 471.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.45;SB=-1.185e+02;SOR=2.448;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:500,39,0 1 169947146 . C CA 1536.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.253;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.39;RPA=11,12;RU=A;ReadPosRankSum=-0.629;SB=-4.240e+02;SOR=1.542;STR;VQSLOD=8.68;culprit=FS GT:AD:DP:GQ:PL 1/1:3,60:67:99:1574,109,0 1 169951748 rs638486 A G 370.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-4.276e+01;SOR=3.611;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:399,33,0 1 169952385 rs2057249 G T 861.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.43;SB=-3.976e+01;SOR=4.892;VQSLOD=7.69;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,23:23:69:890,69,0 1 169985559 rs16862931 T C 1241.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.807;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-0.086;SB=-4.500e+02;SOR=0.756;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 0/1:48,47:95:99:1270,0,1354 1 170004722 rs4656732 G A 1219.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=3.689;HaplotypeScore=1.9025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=0.074;SB=-5.720e+02;SOR=1.157;VQSLOD=7.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,47:105:99:1248,0,1509 1 170008281 rs74942897 CAT C 1910.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356;DB;DP=67;ExcessHet=3.0103;FS=5.377;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=1.210;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.52;ReadPosRankSum=0.070;SB=-5.150e+02;SOR=1.460;VQSLOD=0.047;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,39:67:99:1948,0,1347 1 170043482 . A AAACTAGCG 3829.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.30;RPA=1,2;RU=AACTAGCG;ReadPosRankSum=-0.922;SB=-1.444e+03;SOR=0.618;STR;VQSLOD=7.83;culprit=FS GT:AD:DP:GQ:PL 0/1:44,39:84:99:3867,0,4217 1 170115156 rs550297 G A 428.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.828;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=0.829;SB=-1.270e+02;SOR=0.859;VQSLOD=10.13;culprit=FS GT:AD:DP:GQ:PL 0/1:16,18:34:99:457,0,385 1 170115258 rs369983111 C T 698.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.143;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=3.809;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.18;ReadPosRankSum=-0.134;SB=-2.500e+02;SOR=1.230;VQSLOD=5.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,24:53:99:727,0,727 1 170135510 rs576572 T C 726.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.61;SB=-4.176e+01;SOR=4.712;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:57:755,57,0 1 170135669 rs6427234 C T 804.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.413;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=2.959;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.94;ReadPosRankSum=-1.269;SB=-4.340e+02;SOR=0.430;VQSLOD=8.78;culprit=QD GT:AD:DP:GQ:PL 0/1:58,32:90:99:833,0,1718 1 170135760 rs6427235 T C 1426.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.885;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=2.302;HaplotypeScore=1.9990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=1.705;SB=-8.420e+02;SOR=0.809;VQSLOD=6.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:67,57:124:99:1455,0,1822 1 170135765 rs6669514 T C 1411.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.203;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=1.431;HaplotypeScore=2.7877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=1.418;SB=-9.170e+02;SOR=0.659;VQSLOD=8.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,58:124:99:1440,0,1831 1 170338606 rs10800514 C A 555.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.25;SB=-1.861e+02;SOR=1.981;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:45:584,45,0 1 170501385 rs7531125 A C 1926.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;SB=-9.310e+02;SOR=1.123;VQSLOD=5.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1955,141,0 1 170502517 rs1412892 A G 470.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-7.797e+01;SOR=2.985;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:499,36,0 1 170521376 rs913257 G A 2119.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.65;SB=-1.107e+03;SOR=0.933;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2148,160,0 1 170993444 rs72386119 G GGT 573.74 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=31.87;RPA=14,15;RU=GT;ReadPosRankSum=-0.562;SB=-4.376e+01;SOR=2.093;STR;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 0/1:2,16:19:26:611,0,26 1 170994328 rs78569884 A G 412.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=-0.512;SB=-1.870e+02;SOR=0.569;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:17,18:35:99:441,0,488 1 171061989 rs4140653 C T 702.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.962;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=-1.201;SB=-4.250e+02;SOR=0.471;VQSLOD=9.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,29:65:99:731,0,791 1 171061990 rs2064074 A G 1807.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.25;SB=-1.118e+03;SOR=0.892;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:1836,129,0 1 171072798 rs28363535 G A 525.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.950;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.240;HaplotypeScore=2.6147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=0.226;SB=-1.540e+02;SOR=1.037;VQSLOD=7.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,21:50:99:554,0,890 1 171076740 rs28363545 T C 420.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.513;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.827;SB=-3.876e+01;SOR=0.197;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:14,14:28:99:449,0,449 1 171076935 rs1800822 C T 1520.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.481;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=1.497;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.09;MQ0=0;MQRankSum=1.009;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=0.810;SB=-8.220e+02;SOR=0.951;VQSLOD=0.327;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,59:117:99:1549,0,1345 1 171076966 rs2266782 G A 1347.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.617;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=5.034;HaplotypeScore=5.2776;MLEAC=1;MLEAF=0.500;MQ=60.10;MQ0=0;MQRankSum=-0.991;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=0.523;SB=-7.400e+02;SOR=0.345;VQSLOD=0.599;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,54:107:99:1376,0,1447 1 171077038 rs143661234 GTCT G 1095.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQ0=0;MQRankSum=1.200;POSITIVE_TRAIN_SITE;QD=18.57;RPA=2,1;RU=TCT;ReadPosRankSum=0.606;SB=-3.430e+02;SOR=0.607;STR;VQSLOD=3.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,25:62:99:1133,0,1830 1 171077198 rs1920149 G A 3452.77 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;SB=-1.199e+03;SOR=2.066;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,114:114:99:3481,268,0 1 171077372 rs2066534 C G 1451.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.935;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.659;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=0.830;SB=-5.970e+02;SOR=0.569;VQSLOD=7.20;culprit=DP GT:AD:DP:GQ:PL 0/1:93,53:146:99:1480,0,2603 1 171112490 rs1736565 C T 1072.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.55;SB=-1.971e+02;SOR=3.258;VQSLOD=7.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:87:1101,87,0 1 171120956 . 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A T 945.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;DP=63;Dels=0.00;ExcessHet=3.0103;FS=3.414;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.01;ReadPosRankSum=0.616;SB=-4.740e+02;SOR=1.148;VQSLOD=5.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,35:63:99:974,0,709 1 171301033 rs2294483 C G 652.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=1.384;HaplotypeScore=28.1544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=0.805;SB=-9.500e+01;SOR=1.556;VQSLOD=4.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,31:67:99:681,0,1066 1 171301043 . G GA 447.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.33;RPA=12,13;RU=A;ReadPosRankSum=-0.010;SB=-4.809e+01;SOR=0.395;STR;VQSLOD=8.00;culprit=FS GT:AD:DP:GQ:PL 0/1:23,25:55:99:485,0,400 1 171302094 rs4140632 A C 215.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=1.253;SB=0.00;SOR=0.495;VQSLOD=10.09;culprit=FS GT:AD:DP:GQ:PL 0/1:9,7:16:99:244,0,298 1 171303925 rs3820170 C T 1381.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.382;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.708;HaplotypeScore=1.9318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=0.885;SB=-6.610e+02;SOR=0.836;VQSLOD=7.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,55:118:99:1410,0,1663 1 171306323 rs3737924 C T 164.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.824;HaplotypeScore=6.0256;MLEAC=1;MLEAF=0.500;MQ=59.30;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.16;ReadPosRankSum=-0.258;SB=-5.600e+01;SOR=1.300;VQSLOD=5.96;culprit=QD GT:AD:DP:GQ:PL 0/1:15,8:24:99:193,0,331 1 171311003 rs1042772 A C 1932.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=-7.850e+02;SOR=1.609;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:1961,141,0 1 171482616 rs2294291 A C 949.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.604;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.852;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-1.442;SB=-5.170e+02;SOR=0.538;VQSLOD=9.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,41:87:99:978,0,1186 1 171483979 rs7521480 A G 369.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.733;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-0.120;SB=-3.300e+01;SOR=0.840;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:18,13:31:99:398,0,532 1 171486912 rs10913157 G A 1170.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.135;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=9.997;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=0.957;SB=-4.630e+02;SOR=1.609;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 0/1:50,46:96:99:1199,0,1314 1 171496895 rs10753126 A G 947.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.236;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=4.503;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=-0.691;SB=-6.880e+02;SOR=0.260;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:14,42:56:99:976,0,339 1 171509058 rs2015996 G A 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.728;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=1.590;SB=-9.732e-01;SOR=1.802;VQSLOD=5.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,5:14:99:163,0,236 1 171509327 rs760644 G A 833.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-0.335;SB=-5.410e+02;SOR=0.758;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:31,34:65:99:862,0,845 1 171511039 rs1687064 C G 659.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=16.008;HaplotypeScore=3.5271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=-0.849;SB=-1.500e+02;SOR=2.065;VQSLOD=5.09;culprit=FS GT:AD:DP:GQ:PL 0/1:29,24:53:99:688,0,865 1 171514731 rs235468 C G 283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=1.381;SB=-3.100e+01;SOR=0.818;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:8,9:17:99:312,0,195 1 171519487 rs235470 A C 318.74 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.52;ReadPosRankSum=0.671;SB=-7.297e+01;SOR=1.473;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:1,12:13:6:346,0,6 1 171526570 rs1687057 G A 1021.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.181;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.852;HaplotypeScore=2.5975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-1.175;SB=-6.320e+02;SOR=0.506;VQSLOD=9.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,39:76:99:1050,0,977 1 171527322 rs235482 A G 199.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=0.077;SB=-3.200e+01;SOR=0.784;VQSLOD=10.14;culprit=FS GT:AD:DP:GQ:PL 0/1:12,8:20:99:228,0,376 1 171535309 rs2038040 T C 233.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=0.477;SB=-3.000e+01;SOR=1.071;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:15,9:24:99:262,0,414 1 171535573 rs2038041 T C 245.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.230;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.103;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=-0.434;SB=-2.901e+01;SOR=1.302;VQSLOD=7.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,9:22:99:274,0,337 1 171546833 rs6685179 C A 335.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.244;SB=-1.680e+02;SOR=0.712;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:12,15:27:99:364,0,278 1 171548868 rs235489 T C 254.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.564;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=10.386;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=0.267;SB=-1.623e+02;SOR=0.024;VQSLOD=4.58;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:283,0,263 1 171556165 rs235501 G C 1360.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.966;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.684;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=0.869;SB=-6.830e+02;SOR=0.870;VQSLOD=6.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:72,58:130:99:1389,0,1748 1 171558516 rs235503 C T 687.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.380;HaplotypeScore=33.8942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-0.528;SB=-1.270e+02;SOR=1.204;VQSLOD=7.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,27:56:99:716,0,820 1 171607702 rs2032555 C T 368.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.277;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=0.439;SB=-1.600e+02;SOR=0.722;VQSLOD=9.92;culprit=FS GT:AD:DP:GQ:PL 0/1:22,17:39:99:397,0,552 1 171621525 rs2234926 C T 2008.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.920;DB;DP=168;Dels=0.00;ExcessHet=3.0103;FS=1.217;HaplotypeScore=4.5006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=1.234;SB=-1.040e+03;SOR=0.822;VQSLOD=7.28;culprit=DP GT:AD:DP:GQ:PL 0/1:88,80:168:99:2037,0,2357 1 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0/1:5,8:13:99:258,0,123 1 172011059 rs3736791 G A 337.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.623;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=6.520;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=0.087;SB=-5.150e-01;SOR=2.998;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 0/1:13,11:24:99:366,0,360 1 172100831 rs2421987 G A 523.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.133;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.888;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=0.267;SB=-1.480e+02;SOR=1.358;VQSLOD=7.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,21:43:99:552,0,616 1 172356367 rs199616510 G A 905.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=3.275;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.41;ReadPosRankSum=0.387;SB=-3.790e+02;SOR=1.332;VQSLOD=5.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,35:73:99:934,0,864 1 172356437 rs6688654 A G 1162.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.81;SB=-4.310e+02;SOR=1.730;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:87:1191,87,0 1 172376809 rs9425600 T C 296.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=0.000;SB=0.00;SOR=1.609;VQSLOD=9.88;culprit=FS GT:AD:DP:GQ:PL 0/1:4,9:13:99:325,0,117 1 172399346 rs200979934 TAA T 966.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.66;MQ0=0;MQRankSum=1.984;POSITIVE_TRAIN_SITE;QD=19.73;ReadPosRankSum=-0.181;SB=-1.550e+02;SOR=0.495;VQSLOD=2.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,22:49:99:1004,0,1346 1 172400009 rs35527973 AT A 420.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;DB;DP=24;ExcessHet=3.0103;FS=4.853;MLEAC=1;MLEAF=0.500;MQ=60.45;MQ0=0;MQRankSum=1.003;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.53;RPA=3,2;RU=T;ReadPosRankSum=0.058;SB=-1.590e+02;SOR=0.124;STR;VQSLOD=0.472;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,13:24:99:458,0,345 1 172410833 . A G 251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.89;ReadPosRankSum=-1.083;SB=0.00;SOR=1.802;VQSLOD=7.71;culprit=FS GT:AD:DP:GQ:PL 0/1:3,8:11:79:280,0,79 1 172410967 rs1063412 G A 1138.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.183;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=6.582;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=-0.710;SB=-5.650e+02;SOR=0.252;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 0/1:35,48:83:99:1167,0,987 1 172411496 rs2230471 A G 1206.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.19;SB=-5.890e+02;SOR=0.693;VQSLOD=4.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:93:1235,93,0 1 172411768 rs13932 T C 1591.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.733;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.682;HaplotypeScore=2.7467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-2.522;SB=-7.150e+02;SOR=0.838;VQSLOD=7.31;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:66,61:127:99:1620,0,1895 1 172422209 rs2285175 C T 1348.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.870;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.996;HaplotypeScore=2.6841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=-0.657;SB=-4.900e+02;SOR=0.954;VQSLOD=6.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,49:76:99:1377,0,694 1 172425529 rs2285170 C G 1279.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.285;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=3.792;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=0.293;SB=-8.200e+02;SOR=0.692;VQSLOD=5.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,52:97:99:1308,0,1119 1 172431210 rs4916261 G A 702.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=0.00;SOR=6.091;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:731,60,0 1 172434309 rs9425328 G A 392.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.01;SB=0.00;SOR=4.977;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:421,33,0 1 172434375 rs2901655 G A 1364.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-2.271e+02;SOR=3.056;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1393,108,0 1 172437592 rs1129942 G A 1842.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.72;SB=-7.380e+02;SOR=1.647;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1871,138,0 1 172501643 rs2239816 T C 3308.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.125;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.8926;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.08;ReadPosRankSum=0.481;SB=-1.622e+03;SOR=1.179;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:2,108:110:99:3337,205,0 1 172502340 rs2285143 T C 571.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-6.897e+01;SOR=3.383;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:45:600,45,0 1 172502479 . T C 1329.77 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.66;SB=-8.100e+02;SOR=0.693;VQSLOD=4.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1358,99,0 1 172502727 rs55696309 TA T 1855.73 PASS AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.69;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.48;SB=-9.170e+02;SOR=0.874;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:47:99:1893,138,0 1 172547465 rs2285664 A G 2058.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-1.310e+03;SOR=0.723;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2087,150,0 1 172554867 rs10752995 T A 600.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.24;SB=0.00;SOR=5.784;VQSLOD=8.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:629,51,0 1 172554953 rs200993555 A G 897.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.952;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=4.296;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=-1.066;SB=-1.970e+02;SOR=1.405;VQSLOD=6.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,35:64:99:926,0,757 1 172634734 rs2639653 T C 2597.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7884;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;SB=-1.283e+03;SOR=1.275;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2626,187,0 1 173490407 rs5778771 TA T 113.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.55;RPA=17,16;RU=A;ReadPosRankSum=1.144;SB=-5.471e+00;SOR=0.616;STR;VQSLOD=8.98;culprit=QD GT:AD:DP:GQ:PL 0/1:13,12:25:99:151,0,248 1 173490616 . C CTATATA 795.73 PASS AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.16;RPA=10,13;RU=TA;SB=-8.676e+01;SOR=3.611;STR;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:24:36:833,36,0 1 173545653 rs185044038 C A 360.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.652;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=0.874;SB=-6.501e+01;SOR=0.324;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:14,14:28:99:389,0,420 1 173545938 rs180906735 T C 509.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.655;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=0.345;SB=-6.500e+01;SOR=0.836;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:16,18:34:99:538,0,426 1 173556699 rs301698 G T 355.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=0.00;SOR=4.977;VQSLOD=8.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:384,30,0 1 173594213 rs301701 T C 202.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.51;ReadPosRankSum=-2.871;SB=0.00;SOR=0.184;VQSLOD=8.35;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:19,8:27:99:231,0,550 1 173819421 . C CA 125.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.47;RPA=15,16;RU=A;ReadPosRankSum=-1.427;SB=-1.772e+00;SOR=1.352;STR;VQSLOD=7.34;culprit=QD GT:AD:DP:GQ:PL 0/1:13,10:23:99:163,0,230 1 173834332 . TA T 53.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.83;RPA=16,15;RU=A;ReadPosRankSum=0.176;SB=-3.400e+01;SOR=0.527;STR;VQSLOD=7.44;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:91:91,0,277 1 173837037 rs143149970 C T 717.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.526;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.536;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=-0.345;SB=-3.020e+02;SOR=0.362;VQSLOD=9.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,27:56:99:746,0,829 1 173855208 rs16846520 A G 1101.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.185;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=-1.221;SB=-5.910e+02;SOR=0.713;VQSLOD=8.84;culprit=FS GT:AD:DP:GQ:PL 0/1:60,45:105:99:1130,0,1520 1 173961807 rs377599781 A AAC 329.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356;DB;DP=29;ExcessHet=3.0103;FS=9.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;RPA=15,16;RU=AC;ReadPosRankSum=-0.164;SB=-2.657e-01;SOR=3.426;STR;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 0/1:14,11:29:99:367,0,381 1 174188285 rs2103640 G A 857.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.384;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.053;HaplotypeScore=4.6188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-0.608;SB=-4.240e+02;SOR=0.412;VQSLOD=9.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,31:58:99:886,0,765 1 174210910 rs12136358 G A 285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.05;ReadPosRankSum=-0.687;SB=0.00;SOR=1.112;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:314,0,201 1 174221887 rs11351373 GT G 388.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQ0=0;MQRankSum=1.044;POSITIVE_TRAIN_SITE;QD=16.90;RPA=3,2;RU=T;ReadPosRankSum=-1.017;SB=-4.676e+01;SOR=0.223;STR;VQSLOD=3.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,12:24:99:426,0,327 1 174274062 rs2142864 A G 690.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.168;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=-0.113;SB=-1.060e+02;SOR=1.022;VQSLOD=10.05;culprit=FS GT:AD:DP:GQ:PL 0/1:17,22:39:99:719,0,437 1 174274349 rs2860909 T G 1046.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.189;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=6.316;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=-1.047;SB=-1.180e+02;SOR=1.765;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 0/1:40,34:74:99:1075,0,1062 1 174339970 rs10912772 A G 715.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.650;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.35;ReadPosRankSum=0.099;SB=0.00;SOR=0.850;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:18,21:39:99:744,0,573 1 174362965 rs10912778 T C 82.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.18;ReadPosRankSum=0.195;SB=0.00;SOR=0.072;VQSLOD=8.97;culprit=QD GT:AD:DP:GQ:PL 0/1:21,5:26:99:111,0,703 1 174417231 rs7516240 G A 3250.77 PASS AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.02;SB=-1.323e+03;SOR=1.739;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,112:112:99:3279,253,0 1 174516999 rs41266050 C T 724.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.827;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=3.043;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=1.534;SB=-1.240e+02;SOR=1.489;VQSLOD=6.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,25:50:99:753,0,653 1 174819377 rs72717630 C G 239.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.559;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=-1.927;SB=-1.870e+02;SOR=0.569;VQSLOD=9.18;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,11:16:99:268,0,99 1 174926860 . CT C 239.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=1.662;POSITIVE_TRAIN_SITE;QD=5.45;RPA=23,22;RU=T;ReadPosRankSum=0.738;SB=-7.000e+01;SOR=0.973;STR;VQSLOD=1.59;culprit=QD GT:AD:DP:GQ:PL 0/1:20,24:52:99:277,0,339 1 174927388 rs10798329 G C 800.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.32;SB=-4.276e+01;SOR=4.804;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:829,60,0 1 174945171 rs142125254 CTGTATGACTGTGA C 1270.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.11;RPA=2,1;RU=TGTATGACTGTGA;ReadPosRankSum=0.377;SB=-4.330e+02;SOR=0.903;STR;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:20,9:32:99:1308,0,2774 1 174969271 rs1046439 C T 986.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-3.100e+02;SOR=2.093;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:75:1015,75,0 1 175014250 rs7355181 A G 397.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.809;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.187;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=-0.110;SB=-1.050e+02;SOR=0.260;VQSLOD=10.29;culprit=SOR GT:AD:DP:GQ:PL 0/1:11,14:25:99:426,0,326 1 175046488 rs2072033 G A 379.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.313;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=-1.223;SB=-9.700e+01;SOR=1.158;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:14,15:29:99:408,0,335 1 175046789 rs2072032 A G 3395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.534;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=-1.264;SB=-2.148e+03;SOR=0.718;VQSLOD=5.02;culprit=DP GT:AD:DP:GQ:PL 0/1:116,134:250:99:3424,0,2907 1 175049379 rs16847812 G A 1354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.733;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=8.122;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=0.558;SB=-3.700e+02;SOR=1.465;VQSLOD=5.42;culprit=FS GT:AD:DP:GQ:PL 0/1:62,48:110:99:1383,0,1554 1 175053098 rs11577778 T C 1246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.166;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=-2.038;SB=-5.930e+02;SOR=0.685;VQSLOD=7.61;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:81,54:136:99:1275,0,2302 1 175053101 rs2072030 A T 1282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.228;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=-1.976;SB=-5.370e+02;SOR=0.730;VQSLOD=7.65;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:83,54:137:99:1311,0,2252 1 175063571 rs12068982 A G 153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.623;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.09;ReadPosRankSum=-1.010;SB=-9.732e-01;SOR=1.402;VQSLOD=7.28;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:182,0,403 1 175086461 rs6690229 A G 1685.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.89;SB=-6.997e+01;SOR=5.330;VQSLOD=2.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1714,129,0 1 175087606 rs10912888 T C 833.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.714;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=1.189;SB=-2.430e+02;SOR=0.616;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:33,31:64:99:862,0,910 1 175087677 rs6656284 G A 1322.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.342;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=43.8158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=-0.393;SB=-8.210e+02;SOR=0.685;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:55,57:112:99:1351,0,1410 1 175087683 . A AT 880.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;DP=111;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;RPA=10,11;RU=T;ReadPosRankSum=0.386;SB=-4.200e+02;SOR=0.883;STR;VQSLOD=7.04;culprit=QD GT:AD:DP:GQ:PL 0/1:54,44:111:99:918,0,1143 1 175087729 rs6696455 T C 1278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.243;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=1.120;SB=-8.290e+02;SOR=0.706;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:63,55:118:99:1307,0,1658 1 175087884 rs2269654 C T 1441.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.335;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=5.474;HaplotypeScore=2.8316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=1.558;SB=-8.620e+02;SOR=0.333;VQSLOD=8.51;culprit=FS GT:AD:DP:GQ:PL 0/1:36,52:88:99:1470,0,994 1 175087885 rs6694078 A G 1469.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.060;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=4.228;HaplotypeScore=2.8316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.70;ReadPosRankSum=1.558;SB=-8.960e+02;SOR=0.333;VQSLOD=9.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,52:88:99:1498,0,921 1 175092674 rs2285215 C T 1269.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.175;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=-0.971;SB=-5.770e+02;SOR=0.756;VQSLOD=8.69;culprit=FS GT:AD:DP:GQ:PL 0/1:39,43:82:99:1298,0,1094 1 175092840 rs2072041 T C 1744.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.317;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=8.392;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=0.344;SB=-7.050e+02;SOR=1.378;VQSLOD=5.02;culprit=FS GT:AD:DP:GQ:PL 0/1:60,66:126:99:1773,0,1548 1 175092992 rs10568684 GGAGT G 1336.73 PASS AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;RPA=2,1;RU=GAGT;SB=-7.176e+01;SOR=4.615;STR;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:23:60:1374,60,0 1 175096333 rs2072040 A G 1189.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.846;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=9.420;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.99;ReadPosRankSum=1.734;SB=-1.070e+02;SOR=4.163;VQSLOD=4.17;culprit=FS GT:AD:DP:GQ:PL 1/1:1,34:35:63:1218,63,0 1 175096389 rs10798334 C T 508.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.92;SB=0.00;SOR=5.421;VQSLOD=8.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:537,42,0 1 175097331 rs10912891 G A 1200.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=14.314;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=-0.112;SB=-3.140e+02;SOR=2.196;VQSLOD=4.92;culprit=FS GT:AD:DP:GQ:PL 0/1:39,45:84:99:1229,0,1139 1 175097349 rs7547567 C T 1192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.371;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=8.665;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=-0.611;SB=-5.550e+02;SOR=0.169;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 0/1:35,40:75:99:1221,0,1017 1 175097357 rs2269652 C G 935.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=4.785;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.556;SB=-2.750e+02;SOR=1.329;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 0/1:43,33:76:99:964,0,1252 1 175097864 rs12022593 G A 1116.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.980;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.955;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=-0.424;SB=-4.710e+02;SOR=0.850;VQSLOD=7.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,43:71:99:1145,0,723 1 175097991 rs10798335 C T 324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=7.829;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=-0.234;SB=-2.221e+02;SOR=0.063;VQSLOD=7.92;culprit=FS GT:AD:DP:GQ:PL 0/1:9,13:22:99:353,0,262 1 175104719 rs4651322 T C 351.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.540;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.54;ReadPosRankSum=1.405;SB=0.00;SOR=1.179;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:380,0,213 1 175104790 rs4651323 T C 854.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.782;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=-0.388;SB=-2.070e+02;SOR=0.628;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:26,29:55:99:883,0,746 1 175104796 rs4651324 G T 2130.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5467;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SB=-5.130e+02;SOR=2.621;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2159,160,0 1 175105880 rs2072037 G A 1438.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=-6.330e+02;SOR=1.519;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1467,108,0 1 175105942 rs4650703 G A 1836.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5698;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-9.000e+02;SOR=1.217;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1865,138,0 1 175113578 rs10912897 T C 2577.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.22;SB=-1.010e+03;SOR=1.468;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2606,196,0 1 175116046 . C CT 672.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;DP=72;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;RPA=15,16;RU=T;ReadPosRankSum=1.567;SB=-2.750e+02;SOR=0.472;STR;VQSLOD=9.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,35:72:99:710,0,323 1 175116252 rs4651335 C G 1555.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.57;SB=-3.120e+02;SOR=2.935;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1584,117,0 1 175129691 rs2269650 G T 300.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.825;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-0.557;SB=-1.765e+00;SOR=1.244;VQSLOD=10.05;culprit=FS GT:AD:DP:GQ:PL 0/1:14,10:24:99:329,0,443 1 175129946 rs2072035 C T 1444.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.945;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=6.045;HaplotypeScore=3.5961;MLEAC=1;MLEAF=0.500;MQ=60.38;MQ0=0;MQRankSum=-2.102;POSITIVE_TRAIN_SITE;QD=16.80;ReadPosRankSum=-0.792;SB=-4.200e+02;SOR=1.382;VQSLOD=0.599;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,51:86:99:1473,0,857 1 175130204 rs1057239 G A 852.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.754;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=4.350;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=1.135;SB=-1.140e+02;SOR=1.410;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 0/1:39,27:66:99:881,0,1082 1 175130276 rs1135289 G A 760.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-2.640e+02;SOR=1.893;VQSLOD=5.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:789,60,0 1 175293424 rs2213635 T C 519.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.545;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=-1.118;SB=-3.500e+01;SOR=0.756;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:16,17:33:99:548,0,476 1 175299301 rs2027867 T C 807.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=0.214;SB=-2.810e+02;SOR=0.811;VQSLOD=10.12;culprit=FS GT:AD:DP:GQ:PL 0/1:24,26:50:99:836,0,689 1 175323446 rs2301432 A G 436.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=0.00;SOR=5.136;VQSLOD=8.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:465,36,0 1 175324518 rs55715761 GCA G 1978.73 PASS AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-4.290e+02;SOR=2.494;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:2016,111,0 1 175324521 rs55973835 A T 1159.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.52;SB=-2.550e+02;SOR=2.554;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:93:1188,93,0 1 175324651 rs2228359 A G 2966.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;SB=-1.893e+03;SOR=0.856;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:2995,223,0 1 175335234 rs1385541 C T 2096.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.069;DB;DP=162;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-0.456;SB=-1.089e+03;SOR=0.702;VQSLOD=8.34;culprit=DP GT:AD:DP:GQ:PL 0/1:85,76:162:99:2125,0,2151 1 175335412 rs1385540 A C 934.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.94;SB=-3.777e+01;SOR=4.977;VQSLOD=7.06;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,24:24:72:963,72,0 1 175336292 rs1872440 C A 589.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=0.900;SB=-1.550e+02;SOR=0.844;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:28,23:51:99:618,0,810 1 175336305 rs1872439 G C 608.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.622;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=0.937;SB=-2.290e+02;SOR=0.829;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:30,26:56:99:637,0,810 1 175336530 rs6697701 T C 1718.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-6.690e+02;SOR=1.697;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1747,129,0 1 175336619 rs6697801 T C 868.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.15;SB=-5.680e+02;SOR=0.957;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:66:897,66,0 1 175348543 rs859426 T C 260.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=1.098;SB=-3.501e+01;SOR=1.179;VQSLOD=10.16;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:289,0,159 1 175348723 rs859427 C T 1320.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.522;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.718;HaplotypeScore=8.2055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-0.590;SB=-6.400e+02;SOR=0.585;VQSLOD=9.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,51:115:99:1349,0,1821 1 175355128 rs859436 C G 539.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.806;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.298;HaplotypeScore=5.3552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=0.153;SB=-1.640e+02;SOR=1.096;VQSLOD=7.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,20:44:99:568,0,592 1 175355391 rs859437 A G 3184.79 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=-1.741e+03;SOR=0.795;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:3213,247,0 1 175355618 rs859438 T C 374.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.188;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.746;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-0.508;SB=-2.004e+01;SOR=1.627;VQSLOD=6.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,14:34:99:403,0,507 1 175360690 rs859444 C T 1115.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.17;ReadPosRankSum=-0.819;SB=-3.540e+02;SOR=0.743;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:27,38:65:99:1144,0,681 1 175362736 rs3752517 G A 98.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.58;ReadPosRankSum=-2.147;SB=-2.501e+01;SOR=0.527;VQSLOD=9.11;culprit=QD GT:AD:DP:GQ:PL 0/1:10,5:15:99:127,0,267 1 175363204 rs12023965 C T 130.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=0.389;SB=0.00;SOR=0.446;VQSLOD=10.16;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:159,0,229 1 175365663 rs859446 G A 840.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.621;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.67;ReadPosRankSum=-1.944;SB=-4.480e+02;SOR=0.627;VQSLOD=8.74;culprit=QD GT:AD:DP:GQ:PL 0/1:63,34:98:99:869,0,1750 1 175375334 rs859400 C T 378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.394;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=-0.323;SB=-3.100e+01;SOR=0.927;VQSLOD=10.21;culprit=FS GT:AD:DP:GQ:PL 0/1:18,14:32:99:407,0,573 1 175375469 rs2239819 C A 1592.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.172;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=1.365;HaplotypeScore=2.8069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-0.763;SB=-8.960e+02;SOR=0.557;VQSLOD=8.51;culprit=DP GT:AD:DP:GQ:PL 0/1:75,66:141:99:1621,0,2124 1 175375683 rs859399 T C 2338.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;DB;DP=206;Dels=0.00;ExcessHet=3.0103;FS=6.886;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=-0.661;SB=-1.013e+03;SOR=1.047;VQSLOD=5.11;culprit=DP GT:AD:DP:GQ:PL 0/1:117,89:206:99:2367,0,3066 1 175375802 rs859398 T C 3359.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.039;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.461;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=1.591;SB=-1.933e+03;SOR=0.755;VQSLOD=5.42;culprit=DP GT:AD:DP:GQ:PL 0/1:118,132:250:99:3388,0,3065 1 175376019 rs60974501 AG A 507.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.80;RPA=8,7;RU=G;ReadPosRankSum=-0.825;SB=0.00;SOR=1.528;STR;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:9,18:32:99:545,0,240 1 175910997 rs74127146 T C 366.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.215;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=0.408;SB=0.00;SOR=1.179;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:395,0,218 1 175911247 rs12123116 G A 959.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.607;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.228;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=-1.363;SB=-2.630e+02;SOR=1.067;VQSLOD=7.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,36:74:99:988,0,987 1 175916267 rs6674353 T C 4886.77 PASS AC=2;AF=1.00;AN=2;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;SB=-2.908e+03;SOR=0.745;VQSLOD=6.36;culprit=DP GT:AD:DP:GQ:PL 1/1:0,156:156:99:4915,358,0 1 175916506 . A AT 122.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.82;RPA=18,19;RU=T;ReadPosRankSum=-0.182;SB=0.00;SOR=1.179;STR;VQSLOD=8.79;culprit=QD GT:AD:DP:GQ:PL 0/1:7,11:27:99:160,0,105 1 175937540 rs4534339 C T 2910.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=-1.809e+03;SOR=0.799;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:2939,214,0 1 175951347 rs10798430 T A 1457.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-7.830e+02;SOR=0.883;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1486,111,0 1 175955734 rs9783047 T A 136.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.671;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.20;ReadPosRankSum=-1.930;SB=0.00;SOR=0.223;VQSLOD=8.56;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:165,0,470 1 175955996 rs60964243 T C 707.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.254;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.083;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=-0.462;SB=-2.050e+02;SOR=1.071;VQSLOD=7.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,25:61:99:736,0,1030 1 176012807 rs4233165 G A 427.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-3.477e+01;SOR=3.767;VQSLOD=7.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:456,36,0 1 176015573 rs10494497 T G 263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=0.086;SB=-3.876e+01;SOR=0.818;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:3,9:12:79:292,0,79 1 176055168 rs77666401 T C 33.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.07;ReadPosRankSum=0.908;SB=-3.500e+01;SOR=0.283;VQSLOD=8.84;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:62:62,0,207 1 176103982 rs78569232 C T 615.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.862;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.620;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=-0.165;SB=-2.680e+02;SOR=0.343;VQSLOD=9.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,25:56:99:644,0,919 1 176104251 . A G 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.280;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.99;ReadPosRankSum=2.148;SB=-7.000e+01;SOR=1.179;VQSLOD=7.99;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,10:17:99:317,0,214 1 176132292 rs704828 C T 670.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.83;SB=-3.760e+02;SOR=1.136;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:51:699,51,0 1 176137968 rs7553673 G T 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.689;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=5.927;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=-2.019;SB=-1.513e+02;SOR=0.078;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:6,13:19:99:315,0,202 1 176153658 rs791744 T C 228.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=0.389;SB=-3.876e+01;SOR=0.693;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:3,8:11:86:257,0,86 1 176525194 rs2294654 G A 60.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.08;ReadPosRankSum=-1.001;SB=0.00;SOR=0.223;VQSLOD=9.63;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:89:89,0,250 1 176671621 rs10753136 G A 358.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.580;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=0.376;SB=0.00;SOR=0.693;VQSLOD=10.40;culprit=FS GT:AD:DP:GQ:PL 0/1:12,12:24:99:387,0,353 1 176671914 rs2985893 A T 355.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761;DB;DP=25;Dels=0.04;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.6289;MLEAC=1;MLEAF=0.500;MQ=56.90;MQ0=0;MQRankSum=0.979;QD=14.82;ReadPosRankSum=0.590;SB=-6.402e+01;SOR=0.425;VQSLOD=2.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,13:24:99:384,0,297 1 176681165 rs66731142 ATG A 412.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.643;DB;DP=51;ExcessHet=3.0103;FS=6.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.90;RPA=14,13;RU=TG;ReadPosRankSum=-0.247;SB=-5.150e-01;SOR=2.712;STR;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 0/1:18,14:51:99:450,0,662 1 176734756 rs3737759 C T 2066.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.277;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-1.229;SB=-6.910e+02;SOR=0.677;VQSLOD=7.89;culprit=DP GT:AD:DP:GQ:PL 0/1:83,82:165:99:2095,0,2320 1 176759202 rs2076335 A G 462.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=-0.057;SB=-1.310e+02;SOR=0.838;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:29,17:46:99:491,0,758 1 176762955 rs78673484 T G 621.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=3.107;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=0.109;SB=-9.732e-01;SOR=2.387;VQSLOD=5.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,21:43:99:650,0,705 1 176845386 rs2076339 C T 385.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.974;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=-0.309;SB=-6.500e+01;SOR=1.387;VQSLOD=7.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,14:26:99:414,0,339 1 176845410 rs2076340 G C 1056.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.02;SB=-3.230e+02;SOR=2.165;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:78:1085,78,0 1 176845528 rs2076341 C T 2616.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=-1.150e+03;SOR=1.302;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2645,199,0 1 176845871 rs372758922 G A 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.092;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.13;ReadPosRankSum=-0.792;SB=0.00;SOR=0.540;VQSLOD=8.61;culprit=FS GT:AD:DP:GQ:PL 0/1:12,10:22:99:317,0,387 1 176857347 rs2072935 A G 1946.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.76;SB=-9.820e+02;SOR=1.009;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1975,144,0 1 176857498 rs2076338 G A 504.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.436;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=0.648;SB=-1.580e+02;SOR=0.922;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:18,21:39:99:533,0,462 1 176863836 rs2281180 G C 1834.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=-1.180e+03;SOR=0.726;VQSLOD=6.02;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,59:59:99:1863,132,0 1 176863867 rs2228956 T C 1712.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-1.030e+03;SOR=0.729;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1741,129,0 1 176905200 rs2076071 A G 920.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.345;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.833;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=-0.551;SB=-1.800e+02;SOR=0.416;VQSLOD=8.76;culprit=QD GT:AD:DP:GQ:PL 0/1:13,32:45:99:949,0,361 1 176915022 rs2076070 A G 1675.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.985;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=8.944;HaplotypeScore=1.7866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=0.884;SB=-5.340e+02;SOR=1.508;VQSLOD=4.77;culprit=FS GT:AD:DP:GQ:PL 0/1:63,66:129:99:1704,0,1510 1 176918504 rs2076073 A G 2208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.713;DB;DP=190;Dels=0.00;ExcessHet=3.0103;FS=3.343;HaplotypeScore=4.4725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=0.581;SB=-1.404e+03;SOR=0.471;VQSLOD=5.86;culprit=DP GT:AD:DP:GQ:PL 0/1:103,87:190:99:2237,0,2630 1 176918675 rs2067038 T G 396.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.965;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=1.214;SB=-2.701e+01;SOR=1.179;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:14,13:27:99:425,0,401 1 176934389 rs12565733 T A 627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=8.313;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=1.745;SB=-3.890e+02;SOR=0.155;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 0/1:30,30:60:99:656,0,895 1 176992553 rs172917 A G 2231.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;DB;DP=182;Dels=0.00;ExcessHet=3.0103;FS=1.807;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=-2.076;SB=-1.403e+03;SOR=0.613;VQSLOD=7.17;culprit=DP GT:AD:DP:GQ:PL 0/1:89,93:182:99:2260,0,2282 1 176998930 rs56297461 C T 651.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.486;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.345;HaplotypeScore=6.9888;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.927;SB=-2.880e+02;SOR=1.136;VQSLOD=7.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,25:54:99:680,0,659 1 176999917 rs12568439 G A 1018.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=2.557;HaplotypeScore=5.7434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=0.863;SB=-4.850e+02;SOR=0.987;VQSLOD=6.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,45:108:99:1047,0,1596 1 177001896 rs2076069 C G 3261.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.313;DB;DP=209;Dels=0.00;ExcessHet=3.0103;FS=1.087;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=0.105;SB=-1.595e+03;SOR=0.776;VQSLOD=6.78;culprit=DP GT:AD:DP:GQ:PL 0/1:91,118:209:99:3290,0,2232 1 177199323 rs3176442 C T 1387.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.53;SB=-5.800e+02;SOR=1.659;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1416,105,0 1 177908852 rs943762 C T 1415.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.699;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.631;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=-1.087;SB=-8.930e+02;SOR=0.621;VQSLOD=8.41;culprit=DP GT:AD:DP:GQ:PL 0/1:82,59:141:99:1444,0,2155 1 177915474 rs842192 A C 1826.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=-1.043e+03;SOR=1.143;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1855,132,0 1 177921322 . C T 1223.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.745;DP=99;Dels=0.00;ExcessHet=3.0103;FS=19.173;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.36;ReadPosRankSum=0.141;SB=-7.020e+02;SOR=0.114;VQSLOD=3.02;culprit=FS GT:AD:DP:GQ:PL 0/1:54,45:99:99:1252,0,1478 1 177921434 rs4652282 T A 774.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.172;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.458;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=0.031;SB=-4.300e+02;SOR=0.428;VQSLOD=8.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,30:40:99:803,0,235 1 177929554 rs10913472 C T 1088.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.834;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=2.819;HaplotypeScore=2.7232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=-1.299;SB=-7.170e+02;SOR=0.417;VQSLOD=9.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,47:91:99:1117,0,1200 1 177929987 rs12040910 T C 1681.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.073;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=1.664;SB=-7.580e+02;SOR=0.640;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 0/1:80,69:149:99:1710,0,2119 1 177930096 rs867275 T C 1773.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=1.135;SB=-9.310e+02;SOR=0.787;VQSLOD=8.53;culprit=FS GT:AD:DP:GQ:PL 0/1:76,75:151:99:1802,0,2018 1 177930894 rs945641 C T 485.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.978;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.321;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=-0.689;SB=-1.630e+02;SOR=1.022;VQSLOD=7.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,20:39:99:514,0,551 1 177935275 rs1415085 A G 237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.893;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=0.493;SB=-6.100e+01;SOR=0.593;VQSLOD=10.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,10:21:99:266,0,322 1 178483231 rs10913563 G A 1219.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.434;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.705;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=0.187;SB=-6.800e+02;SOR=0.599;VQSLOD=9.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,49:115:99:1248,0,1643 1 178484834 rs10798611 A G 442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-0.446;SB=-2.140e+02;SOR=0.765;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:16,20:36:99:471,0,447 1 178489978 rs3813636 T G 508.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.107;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.645;HaplotypeScore=1.8914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.21;ReadPosRankSum=0.377;SB=-9.000e+01;SOR=1.258;VQSLOD=6.92;culprit=QD GT:AD:DP:GQ:PL 0/1:42,20:62:99:537,0,1090 1 178491785 . C CT 249.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;RPA=9,10;RU=T;ReadPosRankSum=1.232;SB=-3.206e+01;SOR=0.483;STR;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:11,14:28:99:287,0,213 1 178492447 rs7527160 T A 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.697;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.15;ReadPosRankSum=1.076;SB=-8.700e+01;SOR=1.402;VQSLOD=5.92;culprit=QD GT:AD:DP:GQ:PL 0/1:16,9:25:99:207,0,382 1 178514622 rs12568310 C T 1521.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.285;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=3.256;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=-1.145;SB=-7.680e+02;SOR=0.949;VQSLOD=7.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:69,55:124:99:1550,0,1779 1 178646752 rs2773075 A C 556.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.30;SB=-2.800e+02;SOR=1.292;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:42:585,42,0 1 178863023 rs112670005 C T 407.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.780;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.68;ReadPosRankSum=0.491;SB=-2.030e+02;SOR=0.818;VQSLOD=8.16;culprit=QD GT:AD:DP:GQ:PL 0/1:42,19:61:99:436,0,1063 1 179041011 rs3820163 A G 1062.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.280;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=1.778;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-0.504;SB=-5.840e+02;SOR=0.500;VQSLOD=9.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,45:91:99:1091,0,1234 1 179041391 rs4456058 G A 428.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.386;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.64;ReadPosRankSum=0.757;SB=-3.401e+01;SOR=1.230;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:9,14:23:99:457,0,255 1 179041398 rs2025584 A G 353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.65;ReadPosRankSum=1.179;SB=0.00;SOR=1.179;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:382,0,226 1 179051300 rs2296377 T C 308.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.047;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=1.065;SB=-3.600e+01;SOR=1.981;VQSLOD=6.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,10:14:86:337,0,86 1 179051733 rs78417185 C T 114.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=7.0810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=0.087;SB=-4.076e+01;SOR=0.120;VQSLOD=9.48;culprit=SOR GT:AD:DP:GQ:PL 0/1:6,5:12:99:143,0,195 1 179052002 rs2274228 T G 1362.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.244;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=2.498;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=0.293;SB=-7.540e+02;SOR=0.489;VQSLOD=9.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,51:107:99:1391,0,1583 1 179054692 rs912758 T G 2188.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;DB;DP=204;Dels=0.00;ExcessHet=3.0103;FS=4.150;HaplotypeScore=44.9208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=0.456;SB=-1.350e+03;SOR=0.446;VQSLOD=4.27;culprit=DP GT:AD:DP:GQ:PL 0/1:106,98:204:99:2217,0,2801 1 179067071 rs10913690 C A 238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=-0.755;SB=0.00;SOR=0.976;VQSLOD=10.44;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:267,0,208 1 179079650 rs116837191 C A 220.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.732;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=0.507;SB=-2.801e+01;SOR=0.693;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:13,8:21:99:249,0,465 1 179087934 rs2171959 T C 560.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.326;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.537;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=0.520;SB=-1.440e+02;SOR=0.428;VQSLOD=10.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,24:49:99:589,0,754 1 179089213 rs1858551 C T 772.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.263;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=0.706;SB=-1.370e+02;SOR=0.432;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:15,29:44:99:801,0,414 1 179089475 rs9726961 C G 473.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.109;SB=-3.200e+01;SOR=1.012;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:18,15:33:99:502,0,546 1 179089491 rs9728480 A C 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.189;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=1.418;SB=-1.765e+00;SOR=1.112;VQSLOD=9.88;culprit=FS GT:AD:DP:GQ:PL 0/1:14,9:23:99:309,0,440 1 179089518 rs9727252 C G 120.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.164;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.29;ReadPosRankSum=0.707;SB=-1.765e+00;SOR=1.179;VQSLOD=8.16;culprit=FS GT:AD:DP:GQ:PL 0/1:8,5:13:99:149,0,258 1 179292442 rs2902277 G A 678.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-1.573e+02;SOR=2.737;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:54:707,54,0 1 179304892 rs1034269 T C 704.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-1.653e+02;SOR=2.737;VQSLOD=7.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:54:733,54,0 1 179308803 rs3753524 G A 309.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.562;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=6.560;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=-0.661;SB=-5.150e-01;SOR=3.014;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 0/1:12,10:22:99:338,0,316 1 179310262 rs11576517 C T 1711.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=4.138;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-0.636;SB=-6.730e+02;SOR=1.091;VQSLOD=7.32;culprit=DP GT:AD:DP:GQ:PL 0/1:79,65:144:99:1740,0,1953 1 179312102 rs4651024 T C 1371.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=5.983;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.10;MQ0=0;MQRankSum=0.974;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-0.845;SB=-8.430e+02;SOR=0.765;VQSLOD=0.398;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,59:113:99:1400,0,1369 1 179312235 rs10913728 G A 712.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.904;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQ0=0;MQRankSum=-1.077;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=0.807;SB=-1.030e+02;SOR=0.610;VQSLOD=3.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,24:43:99:741,0,567 1 179312249 rs11350945 AT A 520.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQ0=0;MQRankSum=1.200;POSITIVE_TRAIN_SITE;QD=14.07;RPA=2,1;RU=T;ReadPosRankSum=-0.261;SB=-8.100e+01;SOR=0.446;STR;VQSLOD=2.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,16:38:99:558,0,803 1 179312559 rs13306728 A G 121.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.233;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-1.213;SB=-1.165e+02;SOR=0.093;VQSLOD=9.26;culprit=SOR GT:AD:DP:GQ:PL 0/1:3,7:10:99:150,0,99 1 179312752 rs10753191 C T 734.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.897;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=1.013;SB=-4.220e+02;SOR=0.581;VQSLOD=9.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,31:72:99:763,0,1065 1 179317895 rs200924427 ATGTGTGTGTGTGTGTGTGTGTGTGTG A 6993.73 PASS AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.04;RPA=27,14;RU=TG;SB=-9.033e+02;SOR=3.098;STR;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:37:78:7031,78,0 1 179319541 rs3753526 C G 1115.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.030;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=1.699;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=-0.196;SB=-6.120e+02;SOR=0.954;VQSLOD=7.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,44:93:99:1144,0,1255 1 179319580 rs3753527 T C 2360.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-8.950e+02;SOR=1.842;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2389,172,0 1 179320578 rs13306731 A G 628.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.156;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=-1.519;SB=-3.430e+02;SOR=0.875;VQSLOD=8.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,28:66:99:657,0,1028 1 179320665 rs13306732 A G 643.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.132;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=-1.403;SB=-1.210e+02;SOR=0.941;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:19,23:42:99:672,0,541 1 179335499 . C CT 369.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;RPA=15,16;RU=T;ReadPosRankSum=0.476;SB=-1.245e+02;SOR=0.551;STR;VQSLOD=9.98;culprit=FS GT:AD:DP:GQ:PL 0/1:5,20:26:21:407,0,21 1 179339262 rs16854009 C G 714.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.649;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.268;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=-0.725;SB=-1.220e+02;SOR=1.009;VQSLOD=7.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,25:62:99:743,0,1107 1 179339334 rs6666358 G A 445.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.981;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.26;ReadPosRankSum=-2.083;SB=-4.076e+01;SOR=0.631;VQSLOD=9.57;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,15:22:99:474,0,218 1 179347832 rs10798674 T C 4472.77 PASS AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-2.643e+03;SOR=0.963;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,148:148:99:4501,319,0 1 179351606 rs4625243 G C 397.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.91;SB=0.00;SOR=4.977;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:426,33,0 1 179352736 rs4077551 T C 701.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.568;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=-1.377;SB=-3.020e+02;SOR=0.804;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:26,28:54:99:730,0,768 1 179354304 rs7541905 A G 1119.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.93;SB=-1.225e+02;SOR=3.611;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:84:1148,84,0 1 179364372 rs12405133 G C 471.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=-1.638;SB=-1.600e+02;SOR=0.859;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:25,18:43:99:500,0,632 1 179364391 rs61173288 A G 530.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.397;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=2.162;SB=-1.820e+02;SOR=0.760;VQSLOD=9.19;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:12,20:32:99:559,0,341 1 179380472 rs5779024 GT G 617.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DB;DP=61;ExcessHet=3.0103;FS=3.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;RPA=8,7;RU=T;ReadPosRankSum=0.729;SB=-1.500e+02;SOR=0.304;STR;VQSLOD=9.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,29:61:99:655,0,596 1 179380519 rs10798676 G T 463.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.029;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=6.235;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=1.700;SB=-5.150e-01;SOR=2.720;VQSLOD=5.35;culprit=FS GT:AD:DP:GQ:PL 0/1:19,15:34:99:492,0,567 1 179401503 rs12097041 G A 800.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.245;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3557;MLEAC=1;MLEAF=0.500;MQ=60.34;MQ0=0;MQRankSum=-0.183;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.570;SB=-5.430e+02;SOR=0.596;VQSLOD=3.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,36:63:99:829,0,630 1 179401564 rs10706073 CT C 775.25 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.023;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;MQRankSum=0.530;POSITIVE_TRAIN_SITE;QD=18.91;RPA=12,11;RU=T;ReadPosRankSum=0.220;SB=-3.083e+02;SOR=0.586;STR;VQSLOD=3.80;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:4,37:50:9:812,9,0 1 179416861 . A G 180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.08;ReadPosRankSum=0.608;SB=-4.276e+01;SOR=0.307;VQSLOD=7.73;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:209,0,120 1 179416878 rs7521291 C T 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.256;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.187;SB=-7.597e+01;SOR=0.105;VQSLOD=9.37;culprit=SOR GT:AD:DP:GQ:PL 0/1:6,8:14:99:246,0,197 1 179452194 rs6668035 C T 400.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.40;SB=-3.976e+01;SOR=3.611;VQSLOD=7.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:429,33,0 1 179452275 rs10494520 G A 634.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.267;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.157;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=0.373;SB=-2.300e+02;SOR=0.950;VQSLOD=7.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,24:47:99:663,0,525 1 179452522 rs12407885 G C 413.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.66;SB=0.00;SOR=4.977;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:442,33,0 1 179461027 rs4652401 T C 216.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.623;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=-1.658;SB=0.00;SOR=0.693;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:245,0,220 1 179462149 rs7549194 A G 834.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.85;SB=0.00;SOR=6.273;VQSLOD=5.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:863,66,0 1 179497359 rs6698201 T C 338.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-7.497e+01;SOR=2.494;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:367,27,0 1 179503806 rs6425572 G A 522.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.341;SB=-2.350e+02;SOR=0.748;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 0/1:23,21:44:99:551,0,611 1 179504025 rs141228272 AAAG A 478.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;DB;DP=30;ExcessHet=3.0103;FS=8.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.96;RPA=4,3;RU=AAG;ReadPosRankSum=1.906;SB=-1.820e+02;SOR=0.674;STR;VQSLOD=4.94;culprit=FS GT:AD:DP:GQ:PL 0/1:18,12:30:99:516,0,863 1 179504043 rs6658180 C G 383.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=4.859;HaplotypeScore=6.7460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=0.718;SB=-1.740e+02;SOR=0.900;VQSLOD=5.10;culprit=FS GT:AD:DP:GQ:PL 0/1:26,15:41:99:412,0,719 1 179504130 rs6425574 G A 335.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.322;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.230;HaplotypeScore=3.4184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.19;ReadPosRankSum=-0.575;SB=-1.480e+02;SOR=0.948;VQSLOD=6.45;culprit=QD GT:AD:DP:GQ:PL 0/1:25,16:41:99:364,0,625 1 179520151 rs1410590 C T 691.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-4.176e+01;SOR=4.407;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:720,54,0 1 179520254 rs1410591 C G 1124.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.148;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.890;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=0.129;SB=-4.000e+02;SOR=1.041;VQSLOD=7.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,44:88:99:1153,0,1165 1 179520506 rs1410592 G A 1584.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.851;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=2.783;HaplotypeScore=2.6566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=0.546;SB=-9.460e+02;SOR=0.446;VQSLOD=9.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,62:98:99:1613,0,942 1 179521932 rs2274626 G T 1455.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.801;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=2.546;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=-0.747;SB=-8.050e+02;SOR=0.436;VQSLOD=9.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,58:111:99:1484,0,1423 1 179544898 rs1079292 T C 624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-2.001e+02;SOR=1.981;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:48:653,48,0 1 179556135 rs76197291 C T 234.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-1.581;SB=-9.300e+01;SOR=0.551;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:263,0,274 1 179556306 rs3926126 T C 1538.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.03;SB=-9.730e+02;SOR=0.808;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1567,117,0 1 179557130 rs35777003 T A 136.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=1.957;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.05;ReadPosRankSum=0.000;SB=-1.200e+02;SOR=0.283;VQSLOD=9.10;culprit=QD GT:AD:DP:GQ:PL 0/1:9,8:17:99:165,0,247 1 179561645 rs4652418 A C 457.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;SB=-3.876e+01;SOR=3.611;VQSLOD=7.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:486,36,0 1 179561673 . G GT 226.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.680;DP=18;ExcessHet=3.0103;FS=5.035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.60;RPA=9,10;RU=T;ReadPosRankSum=2.111;SB=-5.546e+01;SOR=3.258;STR;VQSLOD=3.77;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 1/1:2,16:18:31:264,31,0 1 179561683 rs4652419 A T 766.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.04;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.9214;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-1.453e+02;SOR=2.833;VQSLOD=4.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:795,60,0 1 179562143 rs4652420 G A 996.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-3.780e+02;SOR=1.609;VQSLOD=7.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:75:1025,75,0 1 179600084 rs76739061 C G 895.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.930;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.910;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=-0.223;SB=-3.940e+02;SOR=0.929;VQSLOD=7.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,38:76:99:924,0,916 1 179604864 rs4628468 C T 1478.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-6.770e+02;SOR=1.473;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1507,111,0 1 179609589 rs16854429 G T 1779.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.502;DB;DP=181;Dels=0.00;ExcessHet=3.0103;FS=0.561;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=2.212;SB=-1.026e+03;SOR=0.788;VQSLOD=7.00;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:109,72:181:99:1808,0,2735 1 179852074 rs1281378 T C 1790.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.1623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=-0.209;SB=-9.790e+02;SOR=0.584;VQSLOD=8.34;culprit=FS GT:AD:DP:GQ:PL 0/1:69,69:139:99:1819,0,1910 1 179852552 rs605807 T G 362.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.482;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.09;ReadPosRankSum=-0.127;SB=0.00;SOR=1.292;VQSLOD=10.08;culprit=FS GT:AD:DP:GQ:PL 0/1:7,12:19:99:391,0,224 1 179858333 rs1300068 C T 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.507;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=1.171;SB=0.00;SOR=0.776;VQSLOD=9.92;culprit=FS GT:AD:DP:GQ:PL 0/1:11,12:23:99:375,0,376 1 179858444 rs2245425 G A 3346.77 PASS AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.88;SB=-1.436e+03;SOR=1.487;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,112:112:99:3375,247,0 1 179877048 . C CTT 161.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.601;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQ0=0;MQRankSum=0.588;QD=9.51;RPA=21,23;RU=T;ReadPosRankSum=0.733;SB=-5.402e+01;SOR=0.551;STR;VQSLOD=2.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,10:24:99:199,0,127 1 179880291 rs140207493 C G 860.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=6.066;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-0.650;SB=-3.540e+02;SOR=1.329;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 0/1:43,33:76:99:889,0,1114 1 179887125 rs627897 G A 2448.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.49;SB=-1.157e+03;SOR=1.117;VQSLOD=3.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2477,187,0 1 179937999 rs73040001 A T 380.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.682;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=0.312;SB=-1.710e+02;SOR=0.888;VQSLOD=5.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,15:26:99:409,0,271 1 179938305 rs539324 G C 712.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-4.320e+02;SOR=0.859;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:57:741,57,0 1 179956497 rs16855052 G T 403.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.681;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=5.284;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=-1.795;SB=-9.701e+01;SOR=0.105;VQSLOD=9.16;culprit=FS GT:AD:DP:GQ:PL 0/1:21,16:37:99:432,0,698 1 179972337 rs17371159 A C 2137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.468;DB;DP=162;Dels=0.00;ExcessHet=3.0103;FS=5.755;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.609;SB=-1.515e+03;SOR=0.392;VQSLOD=7.62;culprit=FS GT:AD:DP:GQ:PL 0/1:71,91:162:99:2166,0,1801 1 179983665 rs2501607 G A 351.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=0.510;SB=-1.590e+02;SOR=0.627;VQSLOD=10.01;culprit=FS GT:AD:DP:GQ:PL 0/1:20,16:36:99:380,0,528 1 179985156 rs16855107 C T 209.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.065;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.375;SB=-9.500e+01;SOR=0.551;VQSLOD=10.11;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:238,0,237 1 179989742 rs2477120 G C 2029.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.708;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=1.277;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=0.348;SB=-1.167e+03;SOR=0.836;VQSLOD=7.55;culprit=DP GT:AD:DP:GQ:PL 0/1:76,73:149:99:2058,0,2109 1 179991688 rs2477116 A T 272.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.035;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=-1.433;SB=0.00;SOR=0.793;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:301,0,288 1 179992076 rs2477117 A G 988.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.34;SB=0.00;SOR=6.666;VQSLOD=7.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:81:1017,81,0 1 179993793 rs4622030 T C 547.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.24;SB=0.00;SOR=5.670;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:576,48,0 1 180000542 rs12125245 G T 1627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.941;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.658;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-0.288;SB=-1.059e+03;SOR=0.620;VQSLOD=9.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,66:126:99:1656,0,1407 1 180003277 rs74487535 C A 370.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.606;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.536;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=-0.347;SB=-1.670e+02;SOR=0.257;VQSLOD=9.65;culprit=SOR GT:AD:DP:GQ:PL 0/1:18,17:35:99:399,0,545 1 180010702 rs4652461 T C 531.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.032;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.25;ReadPosRankSum=-1.123;SB=-3.377e+01;SOR=2.833;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:1,16:17:9:559,9,0 1 180022343 rs9425854 T G 891.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.956;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.943;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=0.212;SB=-2.670e+02;SOR=0.830;VQSLOD=7.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,34:78:99:920,0,1200 1 180022813 rs17371308 A G 193.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.775;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=6.767;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=-0.490;SB=-7.297e+01;SOR=0.057;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:10,9:19:99:222,0,346 1 180034431 rs139704987 CTT C 1079.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.503;DB;DP=43;ExcessHet=3.0103;FS=2.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.11;ReadPosRankSum=1.471;SB=-4.700e+01;SOR=1.314;VQSLOD=5.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,22:43:99:1117,0,1067 1 180049840 rs12126967 C T 885.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.212;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=4.944;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=2.235;SB=-1.190e+02;SOR=1.832;VQSLOD=5.63;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:29,31:60:99:914,0,749 1 180059811 rs10798729 A C 1522.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.829;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7365;MLEAC=1;MLEAF=0.500;MQ=59.93;MQ0=0;MQRankSum=1.068;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=1.422;SB=-4.730e+02;SOR=0.548;VQSLOD=2.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,55:105:99:1551,0,1188 1 180060009 . C G 1037.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.325;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.59;ReadPosRankSum=0.403;SB=-7.000e+01;SOR=0.884;VQSLOD=8.25;culprit=FS GT:AD:DP:GQ:PL 0/1:27,32:59:99:1066,0,867 1 180067988 rs12121845 G A 158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.544;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.81;ReadPosRankSum=-0.425;SB=-4.300e+01;SOR=0.973;VQSLOD=9.01;culprit=QD GT:AD:DP:GQ:PL 0/1:24,9:33:99:187,0,685 1 180080115 rs3767202 T G 769.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.028;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=5.218;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=0.202;SB=-3.920e+02;SOR=0.223;VQSLOD=9.92;culprit=FS GT:AD:DP:GQ:PL 0/1:13,34:47:99:798,0,378 1 180144291 . C CA 289.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=-0.970;POSITIVE_TRAIN_SITE;QD=8.78;RPA=13,14;RU=A;ReadPosRankSum=0.793;SB=-2.005e+01;SOR=1.179;STR;VQSLOD=3.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,16:33:99:327,0,272 1 180144485 rs10913939 G A 1352.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.373;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=2.559;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=1.125;SB=-6.750e+02;SOR=0.466;VQSLOD=9.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,53:113:99:1381,0,1552 1 180145088 rs2298206 A G 2097.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-1.134e+03;SOR=0.874;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2126,157,0 1 180148012 rs17855475 G C 869.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.828;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=3.349;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-1.258;SB=-5.390e+02;SOR=0.385;VQSLOD=9.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,35:68:99:898,0,1058 1 180155376 rs2298207 C G 364.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.472;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.056;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.24;ReadPosRankSum=0.154;SB=-7.797e+01;SOR=0.154;VQSLOD=8.01;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,12:20:99:393,0,249 1 180155382 rs3216058 AG A 689.73 PASS AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.07;RPA=2,1;RU=G;SB=-4.476e+01;SOR=4.174;STR;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:17:48:727,48,0 1 180158668 rs3894210 C T 467.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=0.472;SB=-2.801e+01;SOR=1.179;VQSLOD=10.32;culprit=FS GT:AD:DP:GQ:PL 0/1:10,15:25:99:496,0,289 1 180158927 rs3889149 C G 1017.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.780;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=1.439;SB=-4.770e+02;SOR=0.634;VQSLOD=8.74;culprit=FS GT:AD:DP:GQ:PL 0/1:53,42:95:99:1046,0,1325 1 180159654 rs7521513 C T 684.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.632;DB;DP=54;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-1.300;SB=-2.670e+02;SOR=0.804;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:27,26:53:99:713,0,774 1 180159657 rs1050154 C T 664.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.104;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-1.169;SB=-2.670e+02;SOR=0.862;VQSLOD=9.16;culprit=FS GT:AD:DP:GQ:PL 0/1:27,27:54:99:693,0,800 1 180167090 rs7597 C T 265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.109;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=-1.042;SB=-3.200e+01;SOR=1.609;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:5,10:16:99:294,0,123 1 180167414 rs3738112 C G 1295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.110;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=1.743;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=-0.715;SB=-6.340e+02;SOR=0.661;VQSLOD=7.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,46:87:99:1324,0,1084 1 180167644 rs7544147 T C 1137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.265;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=1.748;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-2.096;SB=-5.750e+02;SOR=1.034;VQSLOD=7.56;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:45,46:91:99:1166,0,1100 1 180180669 rs164980 A G 728.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.912;HaplotypeScore=3.6989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=0.790;SB=-3.830e+02;SOR=0.861;VQSLOD=7.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,32:70:99:757,0,917 1 180217400 rs149914490 C A 1424.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.702;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.743;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=-0.141;SB=-8.010e+02;SOR=0.605;VQSLOD=9.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,52:100:99:1453,0,1313 1 180235662 rs141139762 C T 1562.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.235;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=2.407;HaplotypeScore=1.8658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.270;SB=-8.180e+02;SOR=0.473;VQSLOD=9.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,62:118:99:1591,0,1461 1 180240510 rs2764449 T C 839.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.705;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.545;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=-0.056;SB=-2.740e+02;SOR=1.244;VQSLOD=7.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,30:52:99:868,0,604 1 180257692 rs2254465 A C 499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.40;SB=-1.225e+02;SOR=2.712;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:528,42,0 1 180283659 rs2764433 T C 339.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=-3.876e+01;SOR=3.258;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:368,27,0 1 180464551 . A G 432.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.312;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.02;ReadPosRankSum=0.682;SB=-1.380e+02;SOR=0.813;VQSLOD=8.12;culprit=FS GT:AD:DP:GQ:PL 0/1:19,17:36:99:461,0,525 1 180471066 rs61811621 C T 214.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.464;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.077;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=0.993;SB=-5.000e+01;SOR=1.781;VQSLOD=5.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,11:19:99:243,0,179 1 180757056 rs3761904 A G 624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-1.145e+02;SOR=2.948;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:20:48:653,48,0 1 180803922 rs2271669 T C 1022.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.64;SB=-3.876e+01;SOR=5.211;VQSLOD=5.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:78:1051,78,0 1 180885430 rs10732273 T C 5722.77 PASS AC=2;AF=1.00;AN=2;DB;DP=186;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-3.330e+03;SOR=0.693;VQSLOD=5.84;culprit=DP GT:AD:DP:GQ:PL 1/1:0,186:186:99:5751,433,0 1 180886126 rs201745892 G A 1988.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.455;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.631;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.21;ReadPosRankSum=-1.184;SB=-9.840e+02;SOR=0.805;VQSLOD=6.68;culprit=DP GT:AD:DP:GQ:PL 0/1:69,71:140:99:2017,0,1716 1 180886810 rs3761905 C G 2220.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.84;SB=-6.860e+02;SOR=2.368;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2249,166,0 1 180897521 rs7544551 C T 1290.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-6.980e+02;SOR=1.005;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:96:1319,96,0 1 180905352 rs3795505 C T 2301.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.797;DB;DP=211;Dels=0.00;ExcessHet=3.0103;FS=1.672;HaplotypeScore=5.9324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=1.072;SB=-1.422e+03;SOR=0.585;VQSLOD=6.94;culprit=DP GT:AD:DP:GQ:PL 0/1:116,95:211:99:2330,0,3059 1 180905448 rs3795504 G T 2346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.030;DB;DP=207;Dels=0.00;ExcessHet=3.0103;FS=1.728;HaplotypeScore=3.7821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-0.280;SB=-1.267e+03;SOR=0.573;VQSLOD=7.22;culprit=DP GT:AD:DP:GQ:PL 0/1:118,89:207:99:2375,0,3149 1 180905694 rs3795503 C T 774.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.737;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.103;HaplotypeScore=1.5810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-0.055;SB=-2.580e+02;SOR=1.112;VQSLOD=7.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,34:63:99:803,0,784 1 180913597 rs2331995 A G 3747.77 PASS AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-2.248e+03;SOR=0.888;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,121:121:99:3776,274,0 1 180914304 rs944235 C T 324.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.53;SB=-8.097e+01;SOR=2.494;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:353,27,0 1 180933498 rs4652543 C T 813.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.930;HaplotypeScore=4.9894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=0.511;SB=-1.260e+02;SOR=1.327;VQSLOD=7.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,29:60:99:842,0,877 1 180934977 rs4652544 C T 594.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.03;SB=-4.240e+02;SOR=0.693;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:45:623,45,0 1 180953853 rs3747957 A G 1036.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=1.552;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=-0.017;SB=-5.730e+02;SOR=0.894;VQSLOD=7.41;culprit=QD GT:AD:DP:GQ:PL 0/1:70,44:114:99:1065,0,1783 1 180957130 rs7528255 C A 309.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=1.075;SB=0.00;SOR=1.061;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:7,10:17:99:338,0,214 1 180962282 rs1411478 A G 323.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.777;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.629;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=-0.454;SB=-3.200e+01;SOR=1.880;VQSLOD=6.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,11:19:99:352,0,191 1 181057874 rs6425663 T G 574.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.599;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.596;SB=-2.380e+02;SOR=0.693;VQSLOD=10.09;culprit=FS GT:AD:DP:GQ:PL 0/1:20,20:40:99:603,0,514 1 181058014 rs41268462 C G 460.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.23;ReadPosRankSum=-0.430;SB=-1.920e+02;SOR=0.693;VQSLOD=8.63;culprit=QD GT:AD:DP:GQ:PL 0/1:38,18:56:99:489,0,1035 1 181058313 rs3747955 G A 182.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=-0.227;SB=-8.900e+01;SOR=0.476;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:11,7:18:99:211,0,307 1 181058643 rs1361365 A G 359.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-1.643e+02;SOR=1.270;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:388,30,0 1 181548341 rs17443123 A G 985.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=0.004;SB=-4.500e+02;SOR=0.759;VQSLOD=7.84;culprit=FS GT:AD:DP:GQ:PL 0/1:60,37:97:99:1014,0,1531 1 181684605 rs12407563 A G 1121.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.328;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.954;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=-1.996;SB=-4.080e+02;SOR=0.852;VQSLOD=6.75;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:30,43:73:99:1150,0,755 1 181686216 rs7540850 T C 1421.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-0.597;SB=-5.810e+02;SOR=0.676;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 0/1:83,54:137:99:1450,0,2210 1 181706552 rs2280866 G A 184.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.479;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=0.499;SB=0.00;SOR=0.368;VQSLOD=10.00;culprit=FS GT:AD:DP:GQ:PL 0/1:11,7:18:99:213,0,378 1 181719679 rs704332 C T 695.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=1.145;SB=-3.990e+02;SOR=0.756;VQSLOD=8.86;culprit=FS GT:AD:DP:GQ:PL 0/1:36,31:67:99:724,0,914 1 181726413 rs704330 G A 227.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.770;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=0.041;SB=-2.901e+01;SOR=0.593;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:10,9:19:99:256,0,322 1 181727273 rs704329 G A 1880.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.426;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=2.805;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=0.924;SB=-4.620e+02;SOR=1.065;VQSLOD=7.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,66:121:99:1909,0,1462 1 181745701 rs71632123 C A 244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.953;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=-0.038;SB=-5.800e+01;SOR=1.329;VQSLOD=7.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,9:20:99:273,0,287 1 181750469 rs704328 G T 84.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.299;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.46;ReadPosRankSum=0.510;SB=-3.400e+01;SOR=0.120;VQSLOD=7.90;culprit=QD GT:AD:DP:GQ:PL 0/1:14,5:19:99:113,0,463 1 181752769 . A AT 388.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;DP=57;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.48;RPA=14,15;RU=T;ReadPosRankSum=-0.211;SB=-1.170e+02;SOR=0.512;STR;VQSLOD=8.62;culprit=QD GT:AD:DP:GQ:PL 0/1:28,24:57:99:426,0,482 1 181752923 rs36163765 AAGCTT A 1535.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=1.234;POSITIVE_TRAIN_SITE;QD=16.45;RPA=2,1;RU=AGCTT;ReadPosRankSum=1.350;SB=-4.240e+02;SOR=0.583;STR;VQSLOD=3.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,23:58:99:1573,0,2422 1 181753030 rs546191 T C 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=0.277;SB=0.00;SOR=0.569;VQSLOD=10.37;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:207,0,217 1 181759426 . CT C 106.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=1.054;QD=5.62;RPA=17,16;RU=T;ReadPosRankSum=1.146;SB=0.00;SOR=0.602;STR;VQSLOD=1.75;culprit=QD GT:AD:DP:GQ:PL 0/1:10,9:19:99:144,0,168 1 181759657 rs704326 G A 1420.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=2.314;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=0.017;SB=-6.690e+02;SOR=1.002;VQSLOD=7.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:71,57:128:99:1449,0,1673 1 181764260 rs375694725 G C 1021.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.319;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=4.905;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.93;ReadPosRankSum=-1.770;SB=-4.470e+02;SOR=0.310;VQSLOD=7.82;culprit=FS GT:AD:DP:GQ:PL 0/1:40,39:79:99:1050,0,1226 1 182026813 rs12568050 G C 1656.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.802;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=5.802;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.595;SB=-8.820e+02;SOR=0.354;VQSLOD=8.47;culprit=FS GT:AD:DP:GQ:PL 0/1:60,57:117:99:1685,0,1629 1 182027022 rs12564283 C T 1257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.937;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=8.070;HaplotypeScore=2.7463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-1.270;SB=-6.490e+02;SOR=1.094;VQSLOD=5.62;culprit=FS GT:AD:DP:GQ:PL 0/1:47,51:98:99:1286,0,1257 1 182151909 rs1689791 A G 263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.121;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=11.532;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=2.168;SB=-1.670e+02;SOR=0.344;VQSLOD=4.51;culprit=FS GT:AD:DP:GQ:PL 0/1:9,11:20:99:292,0,252 1 182354850 rs2296520 A G 140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=0.078;SB=-6.300e+01;SOR=0.883;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:169,0,221 1 182355046 rs2296519 A G 733.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=0.335;SB=-5.390e+02;SOR=0.760;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:41,34:75:99:762,0,999 1 182356399 . A G 1198.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.574;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.997;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.37;ReadPosRankSum=-0.031;SB=-5.250e+02;SOR=0.979;VQSLOD=5.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,44:69:99:1227,0,610 1 182369078 rs6698722 G A 1572.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.019;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=-0.696;SB=-1.011e+03;SOR=0.672;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:68,61:129:99:1601,0,1817 1 182369233 rs6674281 A G 2740.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.939;DB;DP=191;Dels=0.00;ExcessHet=3.0103;FS=1.133;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-0.774;SB=-1.543e+03;SOR=0.800;VQSLOD=7.87;culprit=DP GT:AD:DP:GQ:PL 0/1:87,104:191:99:2769,0,2186 1 182369738 rs7551829 G A 77.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.18;ReadPosRankSum=1.045;SB=0.00;SOR=0.160;VQSLOD=9.56;culprit=QD GT:AD:DP:GQ:PL 0/1:11,4:15:99:106,0,396 1 182427355 rs2765278 G A 366.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.665;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=0.040;SB=0.00;SOR=1.402;VQSLOD=9.90;culprit=FS GT:AD:DP:GQ:PL 0/1:7,13:20:99:395,0,233 1 182429295 . CTGTG C,CTG 1617.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.47;RPA=12,10,11;RU=TG;SB=-2.910e+02;SOR=2.948;STR;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/2:0,6,34:48:99:1655,1335,1396,247,0,127 1 182429728 rs266508 T C 1782.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-7.920e+02;SOR=1.569;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1811,132,0 1 182440436 . A T 780.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.641;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.893;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.41;ReadPosRankSum=1.076;SB=-3.990e+02;SOR=0.566;VQSLOD=7.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,31:75:99:809,0,1244 1 182443462 rs649437 T C 1572.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.335;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=0.512;SB=-8.620e+02;SOR=0.684;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:65,58:123:99:1601,0,1710 1 182491107 rs607269 A C 2038.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.869;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=40.90;ReadPosRankSum=-0.152;SB=-1.383e+02;SOR=3.370;VQSLOD=5.57;culprit=QD GT:AD:DP:GQ:PL 1/1:1,56:57:99:2067,154,0 1 182496829 rs7535533 A G 2236.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.50;SB=-7.720e+02;SOR=2.082;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2265,166,0 1 182501933 rs266534 C A 3878.77 PASS AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6320;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.11;SB=-2.432e+03;SOR=0.722;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,138:138:99:3907,289,0 1 182502033 rs266535 G T 2653.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.59;SB=-7.630e+02;SOR=2.215;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2682,202,0 1 182509269 rs266531 G A 878.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=-7.997e+01;SOR=4.255;VQSLOD=4.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:69:907,69,0 1 182509292 rs3856115 A G 1301.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.93;SB=-3.580e+02;SOR=2.687;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1330,105,0 1 182509617 rs3911280 C A 609.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=-8.097e+01;SOR=3.500;VQSLOD=7.19;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,18:18:48:638,48,0 1 182509646 rs12749557 T C 416.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SB=0.00;SOR=4.977;VQSLOD=5.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:445,33,0 1 182517357 rs6657620 G C 766.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.07;SB=-1.195e+02;SOR=3.160;VQSLOD=3.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:795,60,0 1 182525199 . G A 533.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.924;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.53;ReadPosRankSum=0.254;SB=-2.410e+02;SOR=1.145;VQSLOD=5.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,21:56:99:562,0,893 1 182549019 rs533259 A G 4151.77 PASS AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-2.253e+03;SOR=0.895;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,139:139:99:4180,310,0 1 182550200 rs501286 A G 440.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.91;SB=0.00;SOR=5.283;VQSLOD=8.32;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,13:13:39:469,39,0 1 182569626 rs1144566 T C 1549.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.67;SB=-9.920e+02;SOR=0.922;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1578,117,0 1 182571003 rs610367 C T 1468.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-4.710e+02;SOR=2.078;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1497,111,0 1 182571277 rs569790 C T 3059.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5388;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.21;SB=-1.597e+03;SOR=0.896;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:96:99:3088,232,0 1 182573227 rs509476 T C 504.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.69;SB=-2.860e+02;SOR=1.061;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:39:533,39,0 1 182772804 rs61010723 A C 605.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.458;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=6.016;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQ0=0;MQRankSum=0.979;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-1.303;SB=-2.260e+02;SOR=0.153;VQSLOD=0.047;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,23:43:99:634,0,604 1 182778367 rs971040 G A 1530.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;SB=-4.180e+02;SOR=2.400;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1559,114,0 1 182784022 rs2275171 T C 2873.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;SB=-1.100e+03;SOR=1.609;VQSLOD=7.45;culprit=DP GT:AD:DP:GQ:PL 1/1:0,85:85:99:2902,217,0 1 182794901 . G GT 424.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;DP=35;ExcessHet=3.0103;FS=3.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;RPA=2,3;RU=T;ReadPosRankSum=0.250;SB=-5.200e+01;SOR=1.748;STR;VQSLOD=6.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,15:35:99:462,0,719 1 182798081 rs41272518 T C 551.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.006;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.305;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=0.387;SB=-1.640e+02;SOR=0.473;VQSLOD=9.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,20:49:99:580,0,792 1 182798924 rs1045971 G T 642.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.046;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.18;ReadPosRankSum=0.174;SB=-1.820e+02;SOR=0.724;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:42,28:70:99:671,0,1219 1 182812584 rs6704129 C T 778.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.053;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=0.666;SB=-3.560e+02;SOR=1.004;VQSLOD=7.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,29:66:99:807,0,975 1 182825748 rs3737219 C T 649.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.548;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=4.256;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=0.063;SB=-1.520e+02;SOR=1.467;VQSLOD=6.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,25:59:99:678,0,949 1 182841860 rs10911153 G C 203.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=-1.408;SB=0.00;SOR=0.836;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:232,0,202 1 182844020 rs11332 C T 287.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.178;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.93;ReadPosRankSum=1.089;SB=-1.765e+00;SOR=1.981;VQSLOD=5.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,9:17:99:316,0,237 1 182845701 rs41312714 G A 243.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.992;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=0.516;SB=-9.732e-01;SOR=2.517;VQSLOD=5.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,8:17:99:272,0,237 1 182846206 . A AT 154.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.19;RPA=2,3;RU=T;ReadPosRankSum=-0.732;SB=0.00;SOR=1.402;STR;VQSLOD=7.96;culprit=FS GT:AD:DP:GQ:PL 0/1:3,6:10:92:192,0,92 1 182848710 rs7536061 A G 624.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.080;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.14;ReadPosRankSum=-0.721;SB=0.00;SOR=1.528;VQSLOD=9.10;culprit=FS GT:AD:DP:GQ:PL 0/1:9,18:27:99:653,0,252 1 182849834 rs146667415 CA C 216.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;DB;DP=25;ExcessHet=3.0103;FS=4.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.42;RPA=10,9;RU=A;ReadPosRankSum=0.493;SB=-1.514e+01;SOR=2.093;STR;VQSLOD=4.40;culprit=FS GT:AD:DP:GQ:PL 0/1:11,12:25:99:254,0,257 1 182850727 rs6677840 T C 1608.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-7.380e+02;SOR=1.270;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1637,117,0 1 182852979 rs138407725 AAT A 1063.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600;DB;DP=74;ExcessHet=3.0103;FS=4.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.20;ReadPosRankSum=0.828;SB=-3.700e+02;SOR=1.329;VQSLOD=5.28;culprit=FS GT:AD:DP:GQ:PL 0/1:42,28:74:99:1101,0,2264 1 182852982 rs201791149 C T 677.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.305;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.388;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.41;ReadPosRankSum=0.907;SB=-2.330e+02;SOR=1.214;VQSLOD=5.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,28:72:99:706,0,1197 1 182854017 rs3130492 G A 540.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.111;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=-0.443;SB=-1.160e+02;SOR=0.826;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:26,20:46:99:569,0,792 1 182922215 rs78487548 G T 553.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.297;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-0.415;SB=-2.940e+02;SOR=0.530;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:21,21:42:99:582,0,595 1 182928742 rs4567243 T C 596.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.962;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=7.847;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=-0.546;SB=-3.040e+02;SOR=0.793;VQSLOD=5.56;culprit=FS GT:AD:DP:GQ:PL 0/1:13,22:35:99:625,0,325 1 182929023 rs112645583 G A 151.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.857;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.331;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.49;ReadPosRankSum=0.257;SB=-2.801e+01;SOR=1.609;VQSLOD=5.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,7:16:99:180,0,284 1 182993025 rs10911194 C T 3848.77 PASS AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;SB=-1.712e+03;SOR=1.448;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,127:128:99:3877,289,0 1 182993358 rs12030652 G T 237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.652;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=-0.513;SB=-1.765e+00;SOR=1.802;VQSLOD=8.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,8:16:99:266,0,246 1 183072590 rs2296288 T C 3577.77 PASS AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-2.298e+03;SOR=0.778;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,121:121:99:3606,268,0 1 183072701 rs2296289 C T 1499.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=1.549;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=-0.683;SB=-8.530e+02;SOR=0.884;VQSLOD=8.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,58:109:99:1528,0,1333 1 183072908 rs10797835 T C 1687.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-6.170e+02;SOR=2.024;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1716,132,0 1 183077296 rs66464853 A AG 698.73 PASS AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SB=-1.020e+02;SOR=3.126;VQSLOD=7.16;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,15:15:45:736,45,0 1 183079509 rs2296291 C T 899.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.40;SB=-7.397e+01;SOR=4.091;VQSLOD=5.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:69:928,69,0 1 183079853 rs6672093 T C 475.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=0.00;SOR=5.421;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:504,42,0 1 183084607 rs3736888 A G 1811.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-6.150e+02;SOR=2.024;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:56:99:1840,132,0 1 183084608 rs2027082 C A 1770.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-6.770e+02;SOR=1.823;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1799,132,0 1 183085568 rs6424887 C T 729.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.75;SB=-7.597e+01;SOR=3.816;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:758,60,0 1 183085611 . C CAA,CA 904.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.126;DP=43;ExcessHet=3.0103;FS=2.490;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.04;RPA=13,15,14;RU=A;ReadPosRankSum=0.209;SB=-2.540e+02;SOR=0.325;STR;VQSLOD=9.03;culprit=QD GT:AD:DP:GQ:PL 1/2:4,15,24:43:99:942,446,499,254,0,231 1 183085696 rs6424888 A G 2140.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.17;SB=-1.297e+03;SOR=0.693;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2169,160,0 1 183085755 rs20563 A G 2355.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=-1.295e+03;SOR=1.079;VQSLOD=7.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2384,172,0 1 183086757 rs2296292 A C 6914.77 PASS AC=2;AF=1.00;AN=2;DB;DP=228;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-3.879e+03;SOR=1.012;VQSLOD=5.21;culprit=DP GT:AD:DP:GQ:PL 1/1:0,228:228:99:6943,527,0 1 183090751 rs2333621 A G 1082.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.93;SB=-1.643e+02;SOR=3.477;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:81:1111,81,0 1 183093875 . T C 4565.77 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.1075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.90;SB=-2.894e+03;SOR=0.884;VQSLOD=4.63;culprit=DP GT:AD:DP:GQ:PL 1/1:0,158:158:99:4594,340,0 1 183094418 . A AC 864.73 PASS AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.20;RPA=1,2;RU=C;SB=0.00;SOR=6.091;STR;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:902,60,0 1 183094547 rs20558 T C 4967.77 PASS AC=2;AF=1.00;AN=2;DB;DP=166;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-1.941e+03;SOR=1.609;VQSLOD=4.51;culprit=DP GT:AD:DP:GQ:PL 1/1:0,166:166:99:4996,370,0 1 183094802 rs10797850 G A 435.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.964;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.905;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=1.886;SB=-2.160e+02;SOR=0.169;VQSLOD=9.33;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:13,17:30:99:464,0,395 1 183095234 rs1886501 A G 2558.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6108;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=-6.010e+02;SOR=2.712;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2587,190,0 1 183095477 rs2296293 G A 2458.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.62;SB=-7.450e+02;SOR=2.331;VQSLOD=5.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2487,190,0 1 183096253 rs35608853 T TATA 965.73 PASS AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.15;SB=-6.576e+01;SOR=4.174;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:1003,48,0 1 183096634 rs1413390 G A 995.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=-1.443e+02;SOR=3.334;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:78:1024,78,0 1 183096668 rs1413389 C T 695.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.35;SB=0.00;SOR=5.994;VQSLOD=7.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:724,57,0 1 183096694 rs1413388 T C 373.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=0.00;SOR=4.804;VQSLOD=7.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:402,30,0 1 183097956 rs66470465 G GTTA 3355.73 PASS AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.28;RPA=1,2;RU=TTA;SB=-1.452e+03;SOR=1.061;STR;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:59:99:3393,166,0 1 183098001 rs10797851 A G 1221.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-2.560e+02;SOR=2.833;VQSLOD=7.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:93:1250,93,0 1 183099701 rs2296300 G A 484.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.63;SB=-4.176e+01;SOR=3.912;VQSLOD=7.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:513,39,0 1 183100555 rs2333620 T C 218.80 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=19.89;SB=-1.145e+02;SOR=1.802;VQSLOD=6.19;culprit=QD GT:AD:DP:GQ:PL 1/1:0,11:11:21:247,21,0 1 183101471 rs12061219 G A 497.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.18;SB=-4.176e+01;SOR=4.047;VQSLOD=7.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:526,42,0 1 183101686 rs12095664 G A 1405.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.69;SB=-3.990e+02;SOR=2.147;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1434,108,0 1 183102719 rs73036945 C T 150.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.452;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.38;ReadPosRankSum=-1.500;SB=0.00;SOR=0.255;VQSLOD=9.28;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:179,0,375 1 183104003 rs3831074 GGTCTGT G 2169.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.907;DB;DP=54;ExcessHet=3.0103;FS=4.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.60;ReadPosRankSum=0.289;SB=-5.070e+02;SOR=1.532;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 0/1:23,25:54:99:2207,0,2034 1 183104013 . G A 512.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.179;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.779;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.68;ReadPosRankSum=-0.908;SB=-2.200e+02;SOR=0.243;VQSLOD=8.20;culprit=SOR GT:AD:DP:GQ:PL 0/1:25,23:48:99:541,0,766 1 183104079 rs2296298 C G 645.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.83;ReadPosRankSum=-0.751;SB=-3.160e+02;SOR=0.793;VQSLOD=9.59;culprit=QD GT:AD:DP:GQ:PL 0/1:12,19:31:99:674,0,356 1 183104340 rs35182436 AT A 843.73 PASS AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.82;RPA=11,10;RU=T;SB=-3.000e+02;SOR=1.609;STR;VQSLOD=4.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:40:99:881,102,0 1 183105324 rs2296297 C T 524.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=-4.176e+01;SOR=4.047;VQSLOD=7.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:553,42,0 1 183105399 rs2296296 C G 1432.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.32;SB=-3.970e+02;SOR=2.356;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1461,105,0 1 183105534 rs20560 T C 2662.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.47;SB=-1.421e+03;SOR=0.793;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2691,205,0 1 183105705 rs20561 G A 527.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.012;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.704;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-0.784;SB=-1.630e+02;SOR=0.307;VQSLOD=9.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,22:39:99:556,0,477 1 183106739 rs10797854 G A 657.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;SB=-1.085e+02;SOR=3.056;VQSLOD=6.92;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,20:20:51:686,51,0 1 183112041 rs3359 G C 501.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.16;SB=0.00;SOR=5.283;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:530,39,0 1 183155399 rs2276542 A G 435.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.780;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=-0.312;SB=0.00;SOR=1.022;VQSLOD=10.43;culprit=FS GT:AD:DP:GQ:PL 0/1:11,15:26:99:464,0,311 1 183155482 rs684527 C A 1042.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.536;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-0.118;SB=-2.520e+02;SOR=0.765;VQSLOD=8.97;culprit=FS GT:AD:DP:GQ:PL 0/1:35,37:72:99:1071,0,967 1 183155700 rs6678888 C A 1324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.007;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=-0.488;SB=-7.380e+02;SOR=0.759;VQSLOD=8.12;culprit=FS GT:AD:DP:GQ:PL 0/1:43,57:100:99:1353,0,959 1 183155715 rs60707856 CT C 3048.73 PASS AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.94;SB=-1.018e+03;SOR=1.641;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:82:99:3086,223,0 1 183155717 rs61418038 C A 2146.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.631;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=28.25;ReadPosRankSum=2.419;SB=-9.600e+02;SOR=0.380;VQSLOD=4.94;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 1/1:2,74:76:99:2175,108,0 1 183155778 rs6703054 A C 1500.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;SB=0.00;SOR=5.994;VQSLOD=5.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1529,117,0 1 183176970 rs34720363 G GTT 491.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;DB;DP=77;ExcessHet=3.0103;FS=3.183;MLEAC=1;MLEAF=0.500;MQ=60.14;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.81;RPA=15,17;RU=T;ReadPosRankSum=2.360;SB=-1.700e+02;SOR=0.269;STR;VQSLOD=7.93;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:34,29:77:99:529,0,877 1 183177218 rs647347 A G 903.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.00;SB=-8.097e+01;SOR=4.174;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:932,69,0 1 183184524 rs2274981 C T 443.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-1.255;SB=-1.220e+02;SOR=0.892;VQSLOD=10.06;culprit=FS GT:AD:DP:GQ:PL 0/1:18,17:35:99:472,0,530 1 183184616 rs2274980 C T 1135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.723;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.888;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=1.715;SB=-3.180e+02;SOR=0.912;VQSLOD=7.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,39:92:99:1164,0,1482 1 183184848 rs875794 T G 837.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.731;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=4.297;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.73;ReadPosRankSum=-0.500;SB=-2.650e+02;SOR=1.215;VQSLOD=6.81;culprit=QD GT:AD:DP:GQ:PL 0/1:60,36:96:99:866,0,1644 1 183184960 rs875795 C T 150.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.42;ReadPosRankSum=-1.466;SB=0.00;SOR=0.340;VQSLOD=9.96;culprit=FS GT:AD:DP:GQ:PL 0/1:10,6:16:99:179,0,312 1 183187494 rs10911285 T C 730.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.231;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.655;HaplotypeScore=3.8261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.176;SB=-3.390e+02;SOR=0.330;VQSLOD=10.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,31:67:99:759,0,996 1 183187603 rs1129723 C T 958.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.864;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.760;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.49;ReadPosRankSum=-0.960;SB=-6.240e+02;SOR=0.581;VQSLOD=8.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,45:101:99:987,0,1553 1 183191144 rs2296307 C T 948.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.255;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=-0.681;SB=-3.110e+02;SOR=0.460;VQSLOD=9.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,34:54:99:977,0,493 1 183191324 rs2296306 C A 909.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.431;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=1.717;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.28;ReadPosRankSum=0.985;SB=-3.990e+02;SOR=0.976;VQSLOD=7.35;culprit=QD GT:AD:DP:GQ:PL 0/1:60,38:98:99:938,0,1562 1 183191367 rs2296305 C T 754.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.419;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.902;HaplotypeScore=3.6679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.32;ReadPosRankSum=-0.098;SB=-3.130e+02;SOR=0.850;VQSLOD=7.50;culprit=QD GT:AD:DP:GQ:PL 0/1:51,30:81:99:783,0,1380 1 183192304 rs1047980 T G 1993.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.681;DB;DP=176;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.2917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-0.467;SB=-1.099e+03;SOR=0.675;VQSLOD=7.53;culprit=DP GT:AD:DP:GQ:PL 0/1:96,80:176:99:2022,0,2549 1 183194619 rs2021956 A G 239.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.089;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.85;ReadPosRankSum=-0.273;SB=-5.400e+01;SOR=0.653;VQSLOD=8.90;culprit=QD GT:AD:DP:GQ:PL 0/1:31,10:42:99:268,0,843 1 183197305 rs6658628 A G 438.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.191;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=-0.270;SB=0.00;SOR=0.382;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:21,14:35:99:467,0,671 1 183204477 rs2296302 G A 324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.351;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.423;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=0.036;SB=-1.920e+02;SOR=0.423;VQSLOD=9.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,16:33:99:353,0,445 1 183205523 rs34154823 CAA C 248.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;DB;DP=23;ExcessHet=3.0103;FS=2.663;MLEAC=1;MLEAF=0.500;MQ=60.93;MQ0=0;MQRankSum=1.086;POSITIVE_TRAIN_SITE;QD=11.31;RPA=18,16;RU=A;ReadPosRankSum=0.682;SB=-2.902e+01;SOR=1.765;STR;VQSLOD=0.162;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,11:23:99:266,0,127 1 183206573 rs1047981 G A 540.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.360;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-0.903;SB=-3.430e+02;SOR=0.619;VQSLOD=10.20;culprit=FS GT:AD:DP:GQ:PL 0/1:17,23:40:99:569,0,451 1 183207603 rs1925043 T C 699.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.836;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=9.523;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-0.412;SB=-2.151e+02;SOR=0.078;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 0/1:22,27:49:99:728,0,644 1 183229954 rs35660466 CA C 217.50 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;MQRankSum=0.530;POSITIVE_TRAIN_SITE;QD=12.08;RPA=23,22;RU=A;ReadPosRankSum=0.702;SB=-3.198e+01;SOR=1.329;STR;VQSLOD=3.65;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,16:18:3:253,3,0 1 183259603 rs12077628 T G 380.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-4.276e+01;SOR=3.442;VQSLOD=7.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:409,30,0 1 183261710 rs944189 A G 522.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.51;SB=-1.941e+02;SOR=1.981;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:42:551,42,0 1 183471295 rs789193 G T 633.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.08;SB=-2.977e+01;SOR=4.407;VQSLOD=8.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:662,51,0 1 183481943 rs59379855 C CT 210.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;DB;DP=55;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.39;RPA=20,21;RU=T;ReadPosRankSum=-0.565;SB=-5.200e+01;SOR=1.085;STR;VQSLOD=4.91;culprit=QD GT:AD:DP:GQ:PL 0/1:30,18:55:99:248,0,503 1 183486859 rs789169 G A 2118.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.52;SB=-1.262e+03;SOR=0.948;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:78:99:2147,160,0 1 183516440 rs2702182 G A 1399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.45;SB=-7.020e+02;SOR=1.314;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1428,102,0 1 183525452 rs699244 T G 2219.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.75;SB=-1.123e+03;SOR=1.031;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2248,166,0 1 183534935 rs2296164 C T 2362.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-1.093e+03;SOR=1.195;VQSLOD=7.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2391,181,0 1 183542387 rs2274064 T C 3142.77 PASS AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-1.238e+03;SOR=1.808;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,99:99:99:3171,232,0 1 183617266 rs17436878 C G 3959.77 PASS AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-2.351e+03;SOR=0.826;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,126:126:99:3988,286,0 1 183711483 rs3820689 C T 1586.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-8.440e+02;SOR=1.094;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1615,120,0 1 183816683 rs10494570 G T 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.436;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=0.864;SB=-6.100e+01;SOR=0.368;VQSLOD=10.08;culprit=FS GT:AD:DP:GQ:PL 0/1:16,11:27:99:295,0,506 1 183817016 rs3010054 G A 476.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.05;ReadPosRankSum=-1.134;SB=0.00;SOR=2.712;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 0/1:3,14:17:32:505,0,32 1 183849739 rs41263652 G C 676.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=-1.673e+02;SOR=2.636;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:51:705,51,0 1 183866849 rs12031722 G T 1195.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.32;SB=-3.430e+02;SOR=2.242;VQSLOD=7.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:90:1224,90,0 1 183871637 rs4604659 G A 1221.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;SB=-3.550e+02;SOR=2.362;VQSLOD=4.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:93:1250,93,0 1 183871646 rs12130698 T C 1342.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=-5.170e+02;SOR=1.714;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1371,99,0 1 183876182 rs11591089 C T 3361.77 PASS AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.25;SB=-2.274e+03;SOR=0.710;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,119:119:99:3390,247,0 1 183895178 rs4328036 G A 904.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-2.351e+02;SOR=2.546;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:69:933,69,0 1 183913540 rs17504460 C T 330.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=-1.453;SB=-4.076e+01;SOR=0.260;VQSLOD=9.86;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,12:22:99:359,0,300 1 183938304 rs4651158 C A 87.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.78;ReadPosRankSum=-1.465;SB=0.00;SOR=0.412;VQSLOD=9.93;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:99:116,0,209 1 183938313 rs10667502 G GTT 156.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.71;RPA=11,13;RU=T;ReadPosRankSum=0.182;SB=0.00;SOR=0.368;STR;VQSLOD=9.66;culprit=QD GT:AD:DP:GQ:PL 0/1:11,7:18:99:194,0,332 1 183942950 rs2296714 C T 442.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.52;SB=-1.165e+02;SOR=2.448;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:471,36,0 1 183944089 rs2077202 A C 354.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.36;SB=0.00;SOR=4.804;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:383,30,0 1 183944444 rs2378795 C T 524.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.80;SB=-6.997e+01;SOR=3.258;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:553,42,0 1 183947757 . G GA 261.74 PASS AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.17;RPA=8,9;RU=A;SB=0.00;SOR=4.804;STR;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:299,30,0 1 184020945 rs2274432 G A 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.214;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=4.129;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.13;ReadPosRankSum=0.307;SB=-1.150e+02;SOR=0.188;VQSLOD=9.19;culprit=QD GT:AD:DP:GQ:PL 0/1:14,8:22:99:163,0,401 1 184023529 rs1046934 A C 1248.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.266;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.5360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.07;ReadPosRankSum=-0.148;SB=-8.250e+02;SOR=0.649;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:68,56:124:99:1277,0,1606 1 184662181 rs1061508 C T 1305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.300;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=-1.015;SB=-3.440e+02;SOR=0.665;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:39,47:87:99:1334,0,1148 1 184663537 rs9425343 A C 1006.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.775;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.886;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-2.516;SB=-4.830e+02;SOR=0.501;VQSLOD=9.32;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:44,38:82:99:1035,0,1260 1 184663581 rs9425634 T C 703.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.429;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=0.729;SB=-1.970e+02;SOR=0.948;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:34,25:59:99:732,0,930 1 184663643 rs34236444 TA T 256.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;DB;DP=23;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;RPA=7,6;RU=A;ReadPosRankSum=0.462;SB=-6.297e+01;SOR=0.126;STR;VQSLOD=9.52;culprit=SOR GT:AD:DP:GQ:PL 0/1:9,12:23:99:294,0,222 1 184675814 rs1062994 G A 1943.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.162;DB;DP=164;Dels=0.00;ExcessHet=3.0103;FS=0.576;HaplotypeScore=1.8188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=0.561;SB=-1.249e+03;SOR=0.788;VQSLOD=7.84;culprit=DP GT:AD:DP:GQ:PL 0/1:79,85:164:99:1972,0,2110 1 184677464 rs3736757 G A 999.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=0.188;SB=-3.630e+02;SOR=0.623;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:34,39:73:99:1028,0,983 1 184681081 rs7525074 A G 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.097;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=1.492;SB=0.00;SOR=0.693;VQSLOD=8.91;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:309,0,294 1 184692999 . T TA 302.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;DP=45;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.500;MQ=59.87;MQ0=0;MQRankSum=1.071;POSITIVE_TRAIN_SITE;QD=8.41;RPA=20,21;RU=A;ReadPosRankSum=-0.046;SB=-2.601e+01;SOR=1.863;STR;VQSLOD=0.089;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,22:45:99:340,0,155 1 184695571 rs10752941 C T 647.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.856;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=-0.547;SB=-1.440e+02;SOR=0.643;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:13,22:35:99:676,0,362 1 184706212 rs10711907 GT G 762.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.43;RPA=2,1;RU=T;ReadPosRankSum=1.153;SB=-2.320e+02;SOR=0.836;STR;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:13,21:34:99:800,0,462 1 184718750 rs35957626 GAAA G 307.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.10;RPA=17,14;RU=A;ReadPosRankSum=0.756;SB=-2.402e+01;SOR=0.941;STR;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:28:99:345,0,260 1 184760001 rs570441 T C 804.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.499;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.16;ReadPosRankSum=-0.415;SB=-1.060e+02;SOR=0.892;VQSLOD=10.24;culprit=FS GT:AD:DP:GQ:PL 0/1:16,26:42:99:833,0,413 1 184764067 rs581100 C G 1137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.607;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=-0.134;SB=-3.820e+02;SOR=0.800;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:28,41:69:99:1166,0,761 1 184777079 rs338564 G A 493.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.849;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=1.232;SB=-3.200e+01;SOR=1.022;VQSLOD=10.16;culprit=FS GT:AD:DP:GQ:PL 0/1:12,16:28:99:522,0,331 1 184777101 rs338565 G A 805.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.815;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.52;ReadPosRankSum=-0.732;SB=-9.300e+01;SOR=0.840;VQSLOD=9.95;culprit=FS GT:AD:DP:GQ:PL 0/1:18,28:46:99:834,0,481 1 184777177 rs543912 C A 2151.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.220;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=-0.809;SB=-8.540e+02;SOR=0.767;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:55,83:138:99:2180,0,1439 1 184777467 rs338566 A T 614.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.710;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.344;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=1.373;SB=-1.240e+02;SOR=1.136;VQSLOD=7.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,23:51:99:643,0,775 1 185094277 rs7523448 G T 143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.565;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.161;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.99;ReadPosRankSum=0.604;SB=-6.500e+01;SOR=0.250;VQSLOD=9.07;culprit=QD GT:AD:DP:GQ:PL 0/1:17,7:24:99:172,0,555 1 185119794 rs1544051 C T 417.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.14;SB=-3.976e+01;SOR=3.767;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:446,36,0 1 185121070 . G GA 533.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.25;RPA=10,11;RU=A;ReadPosRankSum=0.640;SB=-1.830e+02;SOR=0.693;STR;VQSLOD=8.55;culprit=FS GT:AD:DP:GQ:PL 0/1:10,25:37:99:571,0,163 1 185135745 rs950327 A G 594.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=0.364;SB=-3.220e+02;SOR=0.723;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:29,25:54:99:623,0,711 1 185137454 . T TAAATGATAGAC 2574.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;DP=37;ExcessHet=3.0103;FS=4.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.51;ReadPosRankSum=0.127;SB=-1.186e+03;SOR=0.612;VQSLOD=4.36;culprit=FS GT:AD:DP:GQ:PL 0/1:16,20:37:99:2612,0,1963 1 185137461 rs56166198 A T 447.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.650;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.99;ReadPosRankSum=1.358;SB=-2.410e+02;SOR=0.490;VQSLOD=8.42;culprit=FS GT:AD:DP:GQ:PL 0/1:16,16:32:99:476,0,405 1 185137464 rs59365489 T TAA 672.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;DB;DP=30;ExcessHet=3.0103;FS=3.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.42;RPA=1,3;RU=A;ReadPosRankSum=-0.354;SB=-3.320e+02;SOR=0.280;STR;VQSLOD=8.51;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,16:30:99:710,0,619 1 185143721 rs10489579 A G 1088.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.767;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=-0.061;SB=-5.510e+02;SOR=0.804;VQSLOD=9.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,35:68:99:1117,0,861 1 185153545 rs375713493 G GT 348.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.880;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.61;ReadPosRankSum=0.249;SB=-1.240e+02;SOR=0.665;VQSLOD=8.52;culprit=FS GT:AD:DP:GQ:PL 0/1:12,9:22:99:386,0,482 1 185171869 rs6698109 A G 953.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=-0.089;SB=-5.070e+02;SOR=0.639;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:53,38:91:99:982,0,1343 1 185201061 rs12096987 T C 778.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.294;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-0.853;SB=-2.030e+02;SOR=0.610;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:29,27:56:99:807,0,790 1 185240474 rs12041704 A G 841.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.126;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.098;SB=-4.720e+02;SOR=0.678;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:33,35:68:99:870,0,904 1 185259731 rs2378909 A G 489.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.427;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.210;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=59.52;MQ0=0;MQRankSum=1.029;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=0.050;SB=-2.901e+01;SOR=2.200;VQSLOD=0.046;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,17:35:99:518,0,459 1 185267114 rs10174 A G 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.360;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.136;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.569;SB=-9.732e-01;SOR=2.133;VQSLOD=6.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,9:21:99:309,0,318 1 185269916 rs10798006 T C 131.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-2.731;SB=0.00;SOR=0.446;VQSLOD=8.90;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,5:12:99:160,0,238 1 185833565 rs7556537 A C 351.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.329;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.406;SB=0.00;SOR=0.551;VQSLOD=10.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,11:24:99:380,0,429 1 185833880 rs41458549 A G 499.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.455;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-0.175;SB=-1.400e+02;SOR=0.576;VQSLOD=10.23;culprit=FS GT:AD:DP:GQ:PL 0/1:20,18:38:99:528,0,549 1 185834847 rs34137386 GTTTC G 1461.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;DB;DP=44;ExcessHet=3.0103;FS=1.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.92;ReadPosRankSum=1.616;SB=-2.690e+02;SOR=0.416;VQSLOD=5.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,27:44:99:1499,0,966 1 185984517 rs6665753 T C 1763.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.343;DB;DP=187;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=-1.279;SB=-9.690e+02;SOR=0.689;VQSLOD=6.59;culprit=DP GT:AD:DP:GQ:PL 0/1:116,71:187:99:1792,0,2998 1 185988567 rs11290212 CT C 211.74 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.532;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;RPA=11,10;RU=T;ReadPosRankSum=0.546;SB=0.00;SOR=2.303;STR;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 0/1:3,11:14:25:249,0,25 1 186022032 rs10911808 T G 819.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.903;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=1.088;SB=-1.020e+02;SOR=0.784;VQSLOD=9.98;culprit=FS GT:AD:DP:GQ:PL 0/1:24,26:50:99:848,0,759 1 186026474 rs12129650 T C 1432.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.193;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=-1.474;SB=-9.260e+02;SOR=0.647;VQSLOD=8.62;culprit=FS GT:AD:DP:GQ:PL 0/1:73,60:133:99:1461,0,1843 1 186030902 rs10737266 G T 794.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.790;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.818;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.92;ReadPosRankSum=-0.751;SB=-9.500e+01;SOR=1.371;VQSLOD=6.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,26:42:99:823,0,419 1 186031041 rs7522627 C T 1307.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=4.107;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=1.000;SB=-5.990e+02;SOR=1.172;VQSLOD=6.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,51:89:99:1336,0,909 1 186039006 rs761905 C T 253.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=-0.215;SB=-1.765e+00;SOR=1.781;VQSLOD=8.07;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:282,0,260 1 186050417 rs10798035 A G 1043.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=5.493;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=0.939;SB=-4.900e+02;SOR=1.338;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 0/1:45,42:87:99:1072,0,1063 1 186055371 rs6425017 A G 1105.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.130;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.83;ReadPosRankSum=0.729;SB=-3.550e+02;SOR=0.830;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 0/1:23,39:62:99:1134,0,530 1 186057181 rs10911816 T C 1324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.909;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=2.568;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-0.023;SB=-6.270e+02;SOR=0.980;VQSLOD=8.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,50:104:99:1353,0,1396 1 186064760 rs1022671 A T 200.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=-0.542;SB=0.00;SOR=1.270;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:229,0,126 1 186077463 rs1555495 A G 476.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.949;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQ0=0;MQRankSum=0.781;POSITIVE_TRAIN_SITE;QD=21.67;ReadPosRankSum=0.282;SB=-4.276e+01;SOR=0.631;VQSLOD=3.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,15:22:99:505,0,199 1 186081918 rs7555520 C T 914.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.270;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=1.692;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=0.703;SB=-4.720e+02;SOR=0.524;VQSLOD=9.36;culprit=QD GT:AD:DP:GQ:PL 0/1:59,40:99:99:943,0,1593 1 186082031 . G A 1096.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.242;DP=94;Dels=0.00;ExcessHet=3.0103;FS=6.846;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.67;ReadPosRankSum=0.557;SB=-6.480e+02;SOR=0.288;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 0/1:50,44:94:99:1125,0,1341 1 186086578 rs10157742 G A 1330.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.864;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-1.484;SB=-5.630e+02;SOR=0.719;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 0/1:50,54:104:99:1359,0,1327 1 186089072 rs2891230 G A 1724.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.045;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.658;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=-1.292;SB=-8.730e+02;SOR=0.611;VQSLOD=9.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:67,66:133:99:1753,0,1692 1 186089112 rs2383434 T C 1626.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.522;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=0.631;HaplotypeScore=18.6630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=1.562;SB=-8.060e+02;SOR=0.591;VQSLOD=7.28;culprit=DP GT:AD:DP:GQ:PL 0/1:85,61:149:99:1655,0,2177 1 186089363 rs10752962 C A 233.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.976;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-0.284;SB=-2.701e+01;SOR=0.446;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:12,9:21:99:262,0,404 1 186092076 rs2057388 A C 1265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.101;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=1.105;SB=-3.980e+02;SOR=0.732;VQSLOD=8.36;culprit=FS GT:AD:DP:GQ:PL 0/1:64,47:111:99:1294,0,1615 1 186101539 rs10911825 A G 748.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.016;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=-1.291;SB=-3.980e+02;SOR=0.990;VQSLOD=7.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,33:59:99:777,0,650 1 186113931 rs3737941 T G 1176.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.231;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.968;HaplotypeScore=2.7260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=1.539;SB=-5.380e+02;SOR=0.479;VQSLOD=9.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,43:72:99:1205,0,803 1 186114441 rs12133166 G T 902.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.084;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=1.774;SB=-1.610e+02;SOR=0.565;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:35,31:66:99:931,0,1036 1 186114443 rs5779272 CT C 623.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.827;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.31;RPA=9,8;RU=T;ReadPosRankSum=1.956;SB=-1.080e+02;SOR=0.709;STR;VQSLOD=8.34;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:36,31:67:99:661,0,886 1 186135236 rs6425021 G A 657.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.248;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-1.108;SB=-9.200e+01;SOR=0.890;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:27,25:52:99:686,0,825 1 186136289 rs7549613 T C 182.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.28;ReadPosRankSum=0.608;SB=-1.765e+00;SOR=2.584;VQSLOD=5.72;culprit=MQRankSum 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451.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=9.728;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=0.396;SB=-1.370e+02;SOR=1.660;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 0/1:19,17:36:99:480,0,479 1 186296926 rs11582844 T C 99.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.07;ReadPosRankSum=-0.179;SB=0.00;SOR=0.330;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:7,4:11:99:128,0,246 1 186305914 rs12085497 A C 450.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.390;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=-0.689;SB=0.00;SOR=0.693;VQSLOD=9.76;culprit=FS GT:AD:DP:GQ:PL 0/1:14,14:28:99:479,0,453 1 186313249 rs2950829 A G 1026.77 PASS 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PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=0.743;SB=-1.648e+02;SOR=0.223;VQSLOD=8.30;culprit=FS GT:AD:DP:GQ:PL 0/1:10,11:21:99:1653,0,1509 1 186908385 rs2307200 C T 403.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.365;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.882;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=0.536;SB=-1.765e+00;SOR=2.494;VQSLOD=5.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,14:23:99:432,0,271 1 186919675 rs12691467 A G 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=1.557;SB=0.00;SOR=0.836;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:247,0,173 1 186919732 rs4650709 A T 1631.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.72;SB=-1.543e+02;SOR=4.362;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1660,129,0 1 186919993 rs969357 G A 1697.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.65;SB=-1.891e+02;SOR=4.047;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1726,132,0 1 186925168 rs5007825 A G 336.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=0.00;SOR=4.977;VQSLOD=8.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:365,30,0 1 186925169 rs35183959 G T 121.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-0.702;SB=0.00;SOR=0.551;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:150,0,203 1 186925194 rs5007824 T C 631.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;SB=-8.297e+01;SOR=3.383;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:660,48,0 1 186925552 rs2307199 T C 1532.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.61;SB=-3.610e+02;SOR=2.786;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1561,114,0 1 186934871 rs6695108 G A 397.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;SB=0.00;SOR=4.977;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:426,33,0 1 186946912 rs2307198 G A 2880.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.74;SB=-1.037e+03;SOR=1.863;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2909,214,0 1 187610538 rs10157977 C G 1366.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.71;SB=-6.230e+02;SOR=1.179;VQSLOD=5.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1395,102,0 1 187610698 rs10157987 C A 843.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.995;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.075;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=-0.323;SB=-4.190e+02;SOR=0.452;VQSLOD=10.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,32:56:99:872,0,668 1 187610777 rs61822202 C G 1198.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.650;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.994;HaplotypeScore=2.5802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.20;ReadPosRankSum=-1.927;SB=-7.590e+02;SOR=0.866;VQSLOD=6.36;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:27,47:74:99:1227,0,780 1 187610852 rs10159182 A C,T 1610.77 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.76;SB=-7.150e+02;SOR=1.412;VQSLOD=5.47;culprit=FS GT:AD:DP:GQ:PL 1/2:0,36,20:56:99:1639,591,510,1048,0,1000 1 187684296 rs150040575 GTGTTTATAGCA G 607.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=1.329;SB=-2.550e+02;SOR=1.022;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:12,5:17:99:645,0,1158 1 189222962 rs6700979 C T 604.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.29;SB=-3.100e+02;SOR=0.963;VQSLOD=5.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:45:633,45,0 1 190234239 rs77612267 T A 334.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.269;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.58;ReadPosRankSum=0.867;SB=-1.130e+02;SOR=0.760;VQSLOD=8.79;culprit=QD GT:AD:DP:GQ:PL 0/1:24,15:39:99:363,0,657 1 192128139 . T G 53.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.001;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-0.765;SB=0.00;SOR=0.569;VQSLOD=7.01;culprit=QD GT:AD:DP:GQ:PL 0/1:7,6:13:82:82,0,116 1 192128183 rs4454527 G A 768.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.94;SB=-1.185e+02;SOR=3.258;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:797,60,0 1 192129370 rs4329489 G A 828.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=0.00;SOR=6.358;VQSLOD=7.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:857,69,0 1 192216486 rs1175147 T C 311.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.562;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-0.255;SB=-1.890e+02;SOR=0.412;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:9,16:25:99:340,0,244 1 192335271 rs377236314 C CTAAT 1190.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQ0=0;MQRankSum=1.205;POSITIVE_TRAIN_SITE;QD=19.00;RPA=1,2;RU=TAAT;ReadPosRankSum=0.753;SB=-3.810e+02;SOR=0.821;STR;VQSLOD=3.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,20:48:99:1228,0,1737 1 192544754 . C CT 230.25 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.809;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.19;RPA=11,12;RU=T;ReadPosRankSum=-1.454;SB=0.00;SOR=3.611;STR;VQSLOD=5.00;culprit=FS GT:AD:DP:GQ:PL 1/1:1,11:12:9:267,9,0 1 192544795 rs2984920 A G 982.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-4.176e+01;SOR=5.136;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:75:1011,75,0 1 192545099 rs7535818 G A 877.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-1.593e+02;SOR=3.180;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:69:906,69,0 1 192778159 rs12130714 A T 625.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=6.629;HaplotypeScore=5.8494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=-0.345;SB=-2.011e+02;SOR=0.127;VQSLOD=8.78;culprit=FS GT:AD:DP:GQ:PL 0/1:14,23:37:99:654,0,426 1 192780498 rs17647363 A G 125.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=1.241;SB=0.00;SOR=0.307;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:9,5:14:99:154,0,302 1 193051685 rs2275444 G A 1807.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.11;SB=-3.400e+02;SOR=3.056;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1836,138,0 1 193051893 rs201236241 AT A 228.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;DB;DP=40;ExcessHet=3.0103;FS=2.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.89;RPA=18,17;RU=T;ReadPosRankSum=0.310;SB=-1.611e+01;SOR=1.852;STR;VQSLOD=3.98;culprit=QD GT:AD:DP:GQ:PL 0/1:12,17:40:99:266,0,146 1 193054154 rs10921309 G A 710.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.134;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=0.765;SB=-3.100e+02;SOR=1.071;VQSLOD=7.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,27:49:99:739,0,564 1 193074651 rs10921310 T A 1451.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9008;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-7.800e+02;SOR=0.829;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1480,114,0 1 193090865 rs10737621 C A 1441.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5960;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.84;SB=-7.260e+02;SOR=0.773;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1470,111,0 1 193094375 rs4466634 T C 1328.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-4.570e+02;SOR=1.954;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1357,99,0 1 193104827 rs10921318 G A 490.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.68;SB=0.00;SOR=5.283;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:519,39,0 1 193205272 rs3738244 T A 3119.77 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=-1.049e+03;SOR=2.027;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:105:99:3148,244,0 1 196227526 rs977157 A G 2720.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6221;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-1.596e+03;SOR=0.883;VQSLOD=4.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2749,199,0 1 196242764 rs558895 T G 424.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.32;SB=-1.185e+02;SOR=2.448;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:33:453,33,0 1 196251522 rs2477357 T C 851.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-3.050e+02;SOR=1.688;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:63:880,63,0 1 196254970 rs2477360 C T 725.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.56;SB=-7.997e+01;SOR=3.816;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:57:754,57,0 1 196311513 rs6658788 G A 443.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=0.00;SOR=5.136;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:472,36,0 1 196398619 rs1538684 T C 387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.438;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=-1.529;SB=0.00;SOR=0.990;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:9,12:21:99:416,0,289 1 196398974 rs12121250 T A 234.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=-0.393;SB=-1.765e+00;SOR=2.030;VQSLOD=5.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,8:15:99:263,0,165 1 196461513 rs4607811 C T 402.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.75;SB=0.00;SOR=4.977;VQSLOD=8.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:431,33,0 1 196654324 rs1061147 A C 1690.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.659;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=0.925;SB=-8.150e+02;SOR=0.640;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:55,58:114:99:1719,0,1488 1 196659237 rs1061170 C T 279.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.619;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.876;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=-0.176;SB=-9.732e-01;SOR=1.659;VQSLOD=5.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,10:28:99:308,0,580 1 196682947 rs2274700 G A 494.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.026;HaplotypeScore=1.8737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.39;ReadPosRankSum=0.777;SB=-2.880e+02;SOR=0.906;VQSLOD=6.52;culprit=QD GT:AD:DP:GQ:PL 0/1:36,23:59:99:523,0,837 1 196705926 rs375046 C A 126.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.104;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=1.529;SB=0.00;SOR=0.446;VQSLOD=9.20;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:155,0,239 1 196710916 rs16840522 T C 230.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.100;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=1.293;SB=0.00;SOR=0.275;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:15,8:23:99:259,0,471 1 196874356 rs10801578 G T 1111.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-5.990e+02;SOR=1.061;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:84:1140,84,0 1 196876458 rs7417769 A G 1682.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.193;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.671;HaplotypeScore=2.6205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=1.480;SB=-7.290e+02;SOR=0.556;VQSLOD=6.91;culprit=DP GT:AD:DP:GQ:PL 0/1:81,70:151:99:1711,0,2113 1 196882344 rs7522952 A G 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.583;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=1.9986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=-0.859;SB=-1.145e+02;SOR=0.105;VQSLOD=9.33;culprit=SOR GT:AD:DP:GQ:PL 0/1:5,10:15:99:295,0,149 1 196882503 rs7533270 G A 164.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-1.123;POSITIVE_TRAIN_SITE;QD=8.24;ReadPosRankSum=0.077;SB=-6.500e+01;SOR=0.307;VQSLOD=2.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,8:20:99:193,0,356 1 196920178 rs3828032 C T 926.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.077;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=3.224;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-1.183;SB=-4.910e+02;SOR=1.096;VQSLOD=7.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,38:69:99:955,0,685 1 196926973 rs3748555 C A 95.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.304;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.71;ReadPosRankSum=0.357;SB=-1.765e+00;SOR=1.112;VQSLOD=8.21;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:99:124,0,218 1 196946775 rs9427662 T C 1245.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.419;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=8.654;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=0.208;SB=-6.840e+02;SOR=0.242;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 0/1:52,51:104:99:1274,0,1443 1 196947030 rs12755054 T C 215.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.62;ReadPosRankSum=0.191;SB=0.00;SOR=1.802;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:3,8:11:86:244,0,86 1 196967458 rs1332664 G T 1086.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.660;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=1.970;HaplotypeScore=4.3840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=-1.481;SB=-2.000e+02;SOR=1.047;VQSLOD=7.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,42:97:99:1115,0,1567 1 196971544 rs181464041 C T 375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.946;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.322;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.64;ReadPosRankSum=-1.743;SB=-2.210e+02;SOR=0.387;VQSLOD=9.05;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:22,17:39:99:404,0,658 1 197008597 rs5990 A C 935.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.484;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=4.232;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-0.681;SB=-3.390e+02;SOR=1.157;VQSLOD=6.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,37:88:99:964,0,1302 1 197009798 rs5998 A G 321.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.256;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.155;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-0.179;SB=-1.610e+02;SOR=1.278;VQSLOD=7.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,14:31:99:350,0,413 1 197030201 rs5997 T C 882.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.227;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=0.529;SB=-1.040e+02;SOR=0.900;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:26,31:57:99:911,0,760 1 197030237 rs17549277 CT C 318.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.94;RPA=6,5;RU=T;ReadPosRankSum=-0.248;SB=0.00;SOR=1.721;STR;VQSLOD=8.84;culprit=FS GT:AD:DP:GQ:PL 0/1:6,14:25:99:356,0,125 1 197030829 rs5993 A T 139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.458;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=-0.693;SB=-6.997e+01;SOR=0.078;VQSLOD=9.08;culprit=SOR GT:AD:DP:GQ:PL 0/1:6,7:13:99:168,0,201 1 197031021 rs6003 C T 648.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.124;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=0.545;SB=-3.320e+02;SOR=0.957;VQSLOD=7.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,26:66:99:677,0,975 1 197053373 rs12677 G A 544.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.473;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.673;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.02;ReadPosRankSum=-2.298;SB=-1.573e+02;SOR=0.066;VQSLOD=9.25;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:12,20:32:99:573,0,359 1 197055925 rs10754213 T C 730.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.689;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=3.511;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=0.371;SB=-5.020e+02;SOR=0.357;VQSLOD=10.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,31:63:99:759,0,763 1 197059892 rs10754214 A G 50.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.63;ReadPosRankSum=-1.482;SB=0.00;SOR=0.105;VQSLOD=9.21;culprit=QD GT:AD:DP:GQ:PL 0/1:11,3:14:79:79,0,394 1 197059928 rs4915316 A G 252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.449;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=-0.991;SB=0.00;SOR=0.204;VQSLOD=8.39;culprit=QD GT:AD:DP:GQ:PL 0/1:20,9:29:99:281,0,650 1 197060077 rs193251130 T G 1042.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.821;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=2.483;HaplotypeScore=4.4059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=0.962;SB=-6.800e+02;SOR=0.495;VQSLOD=8.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:57,50:107:99:1071,0,1489 1 197070776 rs10922162 C T 837.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.683;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=2.970;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=-0.780;SB=-4.300e+02;SOR=0.971;VQSLOD=7.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,33:85:99:866,0,1380 1 197070815 rs1412640 T C 682.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.355;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.870;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.53;ReadPosRankSum=-0.716;SB=-4.360e+02;SOR=0.556;VQSLOD=9.25;culprit=QD GT:AD:DP:GQ:PL 0/1:52,28:81:99:711,0,1228 1 197070901 rs964201 A G 2734.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;SB=-1.667e+03;SOR=0.807;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:2763,199,0 1 197091537 rs4915337 A T 1383.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.875;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=2.582;HaplotypeScore=1.8910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=-0.530;SB=-8.060e+02;SOR=0.435;VQSLOD=9.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,52:104:99:1412,0,1389 1 197101621 rs3737111 T C 213.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=-1.135;SB=0.00;SOR=0.582;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:242,0,255 1 197102745 rs4915344 A G 769.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.446;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-0.472;SB=-9.200e+01;SOR=0.586;VQSLOD=10.12;culprit=FS GT:AD:DP:GQ:PL 0/1:30,27:57:99:798,0,947 1 197104106 rs114887287 T C 59.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.43;ReadPosRankSum=0.980;SB=0.00;SOR=0.180;VQSLOD=9.08;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:88:88,0,269 1 197104149 rs35659894 TA T 349.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.57;RPA=3,2;RU=A;ReadPosRankSum=0.906;SB=0.00;SOR=1.371;STR;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:6,11:17:99:387,0,163 1 197109042 rs1332663 C T 448.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.144;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=6.419;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.37;ReadPosRankSum=-0.041;SB=-6.400e+01;SOR=2.712;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 0/1:5,16:21:99:477,0,114 1 197112533 rs6677082 G A 1427.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.308;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.654;HaplotypeScore=4.6470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=0.262;SB=-8.320e+02;SOR=0.782;VQSLOD=8.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:79,55:134:99:1456,0,1851 1 197113073 rs1571964 G A 164.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.146;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.49;ReadPosRankSum=2.015;SB=-6.300e+01;SOR=0.754;VQSLOD=9.25;culprit=QD GT:AD:DP:GQ:PL 0/1:14,8:22:99:193,0,371 1 197128726 rs12128631 G A 2381.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.367;DB;DP=193;Dels=0.00;ExcessHet=3.0103;FS=0.530;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.764;SB=-1.510e+03;SOR=0.598;VQSLOD=7.52;culprit=DP GT:AD:DP:GQ:PL 0/1:97,96:193:99:2410,0,2759 1 197141253 rs10429910 A C 121.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=0.204;SB=-7.402e+01;SOR=0.527;VQSLOD=9.34;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:98:150,0,98 1 197297540 rs12042179 A T 284.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.471;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=4.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.34;ReadPosRankSum=0.064;SB=-1.765e+00;SOR=2.833;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:313,0,117 1 197316435 rs1337167 T C 4452.77 PASS AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.81;SB=-1.754e+03;SOR=1.731;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,140:140:99:4481,334,0 1 197316644 rs2275251 C T 1329.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.952;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=10.276;HaplotypeScore=3.5536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=0.636;SB=-2.520e+02;SOR=1.688;VQSLOD=5.01;culprit=FS GT:AD:DP:GQ:PL 0/1:70,50:120:99:1358,0,1852 1 197325908 rs2786098 T G 2563.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-1.199e+03;SOR=1.264;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2592,202,0 1 197390368 RISN_CRB1 A G 4140.77 PASS AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.35;SB=-2.541e+03;SOR=0.757;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,128:128:99:4169,301,0 1 197407942 rs980371 A G 431.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=0.00;SOR=5.549;VQSLOD=8.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:460,36,0 1 197482167 rs2013617 C G 380.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-4.276e+01;SOR=3.442;VQSLOD=7.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:409,30,0 1 197510025 rs3902061 G T 915.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-3.976e+01;SOR=5.136;VQSLOD=5.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:75:944,75,0 1 197510299 rs3850628 G A 564.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.20;SB=0.00;SOR=5.670;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:593,48,0 1 197515253 rs11276673 ATGTTCAG A 865.74 PASS AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.16;RPA=2,1;RU=TGTTCAG;SB=0.00;SOR=4.804;STR;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:16:30:903,30,0 1 197515715 rs4303099 G A 560.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.60;SB=0.00;SOR=5.549;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:589,45,0 1 197515777 rs4316386 A T 1423.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.36;SB=-2.400e+02;SOR=2.885;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1452,108,0 1 197576307 rs5779882 A AT 1225.73 PASS AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;RPA=1,2;RU=T;SB=-2.171e+02;SOR=2.910;STR;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:32:87:1263,87,0 1 197741951 rs2477067 C A 1076.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-3.130e+02;SOR=2.235;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:81:1105,81,0 1 197742171 rs2488396 C T 413.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=-4.076e+01;SOR=3.611;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:442,33,0 1 197872019 rs4539165 G T 124.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.004;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.24;ReadPosRankSum=-0.165;SB=-2.901e+01;SOR=0.693;VQSLOD=8.65;culprit=QD GT:AD:DP:GQ:PL 0/1:14,6:20:99:153,0,427 1 197890422 rs12122995 C G 1293.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-5.180e+02;SOR=1.721;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:96:1322,96,0 1 198214462 rs12046935 G A 812.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.237;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.884;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=0.692;SB=-4.330e+02;SOR=0.644;VQSLOD=8.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,31:76:99:841,0,1171 1 198288709 rs6679100 A G 1125.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.507;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=1.125;SB=-3.900e+02;SOR=0.677;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:50,43:93:99:1154,0,1289 1 198498325 rs139314248 AAT A 424.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.35;RPA=10,9;RU=AT;ReadPosRankSum=0.877;SB=-1.460e+02;SOR=0.892;STR;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 0/1:6,13:21:99:462,0,198 1 198663346 rs78958674 G A 300.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.69;ReadPosRankSum=0.106;SB=-1.380e+02;SOR=0.418;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:5,12:17:99:329,0,124 1 198701289 rs1932433 T C 210.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=-0.500;SB=0.00;SOR=0.976;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:239,0,200 1 199996821 . A AT 51.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;DP=20;ExcessHet=3.0103;FS=10.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.72;RPA=11,12;RU=T;ReadPosRankSum=-0.185;SB=-1.709e+01;SOR=0.605;STR;VQSLOD=5.01;culprit=QD GT:AD:DP:GQ:PL 0/1:14,5:20:89:89,0,310 1 200143064 . CTTTT C 1015.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.16;RPA=19,15;RU=T;ReadPosRankSum=-0.803;SB=-1.840e+02;SOR=1.101;STR;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:10,26:37:99:1053,0,278 1 200143281 rs1060060 C T 1778.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.091;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=3.169;HaplotypeScore=1.8808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.326;SB=-1.109e+03;SOR=0.439;VQSLOD=8.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,73:134:99:1807,0,1442 1 200182654 rs6427805 T C 582.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.38;SB=-1.921e+02;SOR=1.863;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:611,45,0 1 200182664 rs6427806 C T 349.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.57;MQ0=0;MQRankSum=0.793;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=-1.448;SB=-9.500e+01;SOR=1.314;VQSLOD=3.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,13:19:99:378,0,157 1 200182834 rs12028402 A G 892.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.339;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.025;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=0.067;SB=-4.440e+02;SOR=0.473;VQSLOD=9.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,34:60:99:921,0,678 1 200183398 rs10919847 C A 515.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.264;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.453;HaplotypeScore=1.9552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-0.240;SB=-1.840e+02;SOR=1.601;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 0/1:25,20:45:99:544,0,619 1 200183460 rs10919848 C T 148.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.978;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.76;ReadPosRankSum=-0.074;SB=-2.302e+01;SOR=1.179;VQSLOD=5.96;culprit=QD GT:AD:DP:GQ:PL 0/1:16,6:22:99:177,0,441 1 200311674 rs2790110 C A 397.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.054;DB;DP=23;Dels=0.04;ExcessHet=3.0103;FS=2.643;HaplotypeScore=2.9328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=0.434;SB=-3.100e+01;SOR=1.938;VQSLOD=5.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,13:22:99:426,0,230 1 200311868 rs2790109 C G 2272.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.71;SB=-1.293e+03;SOR=0.992;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2301,166,0 1 200311910 rs2225986 T A 722.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.916;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.988;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=1.369;SB=-2.780e+02;SOR=0.884;VQSLOD=7.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,32:63:99:751,0,687 1 200312546 rs61101900 CA C 265.75 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=-0.272;POSITIVE_TRAIN_SITE;QD=12.65;RPA=15,14;RU=A;ReadPosRankSum=-0.603;SB=-3.697e+01;SOR=1.101;STR;VQSLOD=3.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,18:22:23:303,0,23 1 200342046 rs6677545 A C 383.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.121;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-1.672;SB=-6.100e+01;SOR=1.493;VQSLOD=7.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,14:32:99:412,0,469 1 200377094 rs61734668 T C 941.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.063;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.312;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-2.019;SB=-4.770e+02;SOR=0.798;VQSLOD=5.34;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:31,36:67:99:970,0,908 1 200522351 rs10800708 A T 453.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=0.00;SOR=5.136;VQSLOD=8.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:482,36,0 1 200523514 rs7548174 A G 317.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.78;SB=0.00;SOR=4.804;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:346,30,0 1 200524694 rs75006872 T A 222.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.429;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=-0.179;SB=0.00;SOR=1.270;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:251,0,127 1 200534248 rs7543730 C T 3465.77 PASS AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.88;SB=-1.638e+03;SOR=1.290;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,116:116:99:3494,259,0 1 200538885 rs10800711 C T 624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-1.205e+02;SOR=2.948;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:51:653,51,0 1 200558363 rs6665951 T C 385.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.67;SB=-2.001e+02;SOR=1.179;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:414,30,0 1 200569392 rs2809357 C A 1684.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-7.690e+02;SOR=1.528;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1713,132,0 1 200578093 rs2794409 G A 904.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-4.090e+02;SOR=1.255;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:69:933,69,0 1 200594005 rs2808257 C T 1580.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-3.490e+02;SOR=2.880;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1609,126,0 1 200594240 rs2809350 G A 1345.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.51;SB=-1.523e+02;SOR=3.967;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1374,105,0 1 200610525 rs5780032 TA T 271.73 PASS AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.90;RPA=14,13;RU=A;SB=0.00;SOR=5.283;STR;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:15:39:309,39,0 1 200618238 rs6665604 T C 1006.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.76;SB=-4.220e+02;SOR=1.483;VQSLOD=5.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:75:1035,75,0 1 200619478 rs2808230 C A 1306.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-3.677e+01;SOR=5.838;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1335,108,0 1 200619530 rs2809365 T C 2134.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-5.200e+02;SOR=2.730;VQSLOD=7.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2163,160,0 1 200632960 rs57155598 T C 952.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7209;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=-1.255e+02;SOR=3.407;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:72:981,72,0 1 200632966 rs60572979 A G 1107.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-1.991e+02;SOR=3.126;VQSLOD=5.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:84:1136,84,0 1 200635550 rs3795634 T C 3412.77 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-1.673e+03;SOR=0.961;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,107:108:99:3441,259,0 1 200635560 rs3795633 T C 3392.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.01;SB=-1.528e+03;SOR=1.136;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3421,259,0 1 200708987 . G A 397.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.917;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.84;ReadPosRankSum=-0.297;SB=-2.170e+02;SOR=0.631;VQSLOD=7.49;culprit=QD GT:AD:DP:GQ:PL 0/1:29,16:45:99:426,0,708 1 200776641 rs7552353 C T 974.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.067;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=0.105;SB=-5.510e+02;SOR=0.572;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:53,38:91:99:1003,0,1171 1 200802045 rs78225055 C T 91.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.34;ReadPosRankSum=-0.361;SB=0.00;SOR=0.330;VQSLOD=9.56;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:99:120,0,218 1 200811313 . A AT 283.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.91;RPA=10,11;RU=T;ReadPosRankSum=1.117;SB=0.00;SOR=1.022;STR;VQSLOD=8.05;culprit=FS GT:AD:DP:GQ:PL 0/1:11,15:35:99:321,0,201 1 200816521 . G T 1314.77 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.87;SB=-3.010e+02;SOR=2.670;VQSLOD=5.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1343,99,0 1 200816658 rs2131834 T C 496.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.50;SB=-8.297e+01;SOR=2.833;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:525,39,0 1 200819424 rs150601775 AT A 171.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;DB;DP=31;ExcessHet=3.0103;FS=4.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.61;RPA=10,9;RU=T;ReadPosRankSum=1.014;SB=-1.321e+01;SOR=1.833;STR;VQSLOD=3.93;culprit=QD GT:AD:DP:GQ:PL 0/1:15,11:31:99:209,0,361 1 200843307 rs376578920 T TCCCG 976.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;DB;DP=36;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.89;RPA=1,2;RU=CCCG;ReadPosRankSum=-0.189;SB=-2.630e+02;SOR=0.439;STR;VQSLOD=6.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,16:36:99:1014,0,997 1 200843374 rs3738251 G C 171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=0.746;SB=-3.401e+01;SOR=0.693;VQSLOD=8.78;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:200,0,208 1 200867492 rs2271018 C G 718.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.232;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-0.236;SB=-4.050e+02;SOR=0.514;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:28,27:55:99:747,0,705 1 200877786 rs2279837 T C 243.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8737;MLEAC=1;MLEAF=0.500;MQ=59.70;MQ0=0;MQRankSum=-1.004;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=-0.925;SB=-5.900e+01;SOR=0.892;VQSLOD=3.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,10:22:99:272,0,396 1 200880702 rs61740234 C T 1049.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.872;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.741;HaplotypeScore=1.8661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=0.665;SB=-6.990e+02;SOR=0.699;VQSLOD=8.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,47:98:99:1078,0,1442 1 200881172 rs296521 C A 766.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.294;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.66;MQ0=1;MQRankSum=-0.189;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=-0.930;SB=-3.270e+02;SOR=0.665;VQSLOD=3.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,31:48:99:795,0,390 1 200881392 rs10800746 C T 273.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.708;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.452;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.60;ReadPosRankSum=-0.844;SB=-1.490e+02;SOR=0.386;VQSLOD=8.84;culprit=QD GT:AD:DP:GQ:PL 0/1:22,14:36:99:302,0,601 1 200943793 rs71991687 CAGGA C 9080.73 PASS AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;RPA=2,1;RU=AGGA;SB=-2.803e+03;SOR=1.779;STR;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,130:133:99:9118,391,0 1 200944536 rs2271144 C T 245.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.162;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=-1.474;SB=-7.101e+01;SOR=1.022;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:5,11:16:99:274,0,132 1 200945757 rs10505675 A G 750.77 PASS 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T C 1715.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.250;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=3.576;HaplotypeScore=3.4078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-0.618;SB=-9.090e+02;SOR=0.426;VQSLOD=9.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,69:121:99:1744,0,1292 1 201052562 rs12743065 G T 686.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.397;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.921;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=-1.709;SB=-1.380e+02;SOR=0.377;VQSLOD=9.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,25:38:99:715,0,388 1 201058692 rs2296384 T C 351.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=0.00;SOR=4.804;VQSLOD=8.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:380,30,0 1 201060865 rs2296383 G A 4926.77 PASS AC=2;AF=1.00;AN=2;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.98;SB=-2.851e+03;SOR=0.870;VQSLOD=4.39;culprit=DP GT:AD:DP:GQ:PL 1/1:0,170:170:99:4955,361,0 1 201079235 rs1325310 C T 3209.76 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SB=-8.000e+02;SOR=2.502;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:3238,238,0 1 201079458 rs1325309 T A 2999.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-6.840e+02;SOR=2.429;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:3028,223,0 1 201112981 rs8158 A G 2755.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-1.486e+03;SOR=1.154;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,92:92:99:2784,199,0 1 201113118 rs3738266 A G 2307.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.59;SB=-1.064e+03;SOR=1.409;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2336,172,0 1 201115822 rs3752978 A G 2764.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.289;DB;DP=189;Dels=0.00;ExcessHet=3.0103;FS=2.513;HaplotypeScore=2.9570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=-0.633;SB=-1.733e+03;SOR=0.793;VQSLOD=7.71;culprit=DP GT:AD:DP:GQ:PL 0/1:84,105:189:99:2793,0,2157 1 201116018 rs3752979 C G 1819.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SB=-5.370e+02;SOR=2.345;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1848,135,0 1 201120730 rs2068152 C A 371.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.117;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-0.260;SB=-2.501e+01;SOR=0.840;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:18,13:31:99:400,0,554 1 201122784 rs6684980 C T 1114.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-2.690e+02;SOR=2.432;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:84:1143,84,0 1 201122947 rs1925361 T G 3055.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.83;SB=-1.908e+03;SOR=0.731;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3084,229,0 1 201163191 rs1107128 G T 1816.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.063;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.30;ReadPosRankSum=1.621;SB=-8.680e+02;SOR=0.507;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:1,61:62:99:1845,135,0 1 201166124 rs12045948 T C 1939.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=-7.750e+02;SOR=1.802;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1968,144,0 1 201166281 rs7533096 C T 4710.77 PASS AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.27;SB=-2.458e+03;SOR=1.037;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,146:146:99:4739,346,0 1 201166383 rs4915221 G A 4975.77 PASS AC=2;AF=1.00;AN=2;DB;DP=166;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-2.956e+03;SOR=0.902;VQSLOD=6.13;culprit=DP GT:AD:DP:GQ:PL 1/1:0,166:166:99:5004,373,0 1 201166435 rs11589317 T C 3778.77 PASS AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-1.978e+03;SOR=1.115;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,122:122:99:3807,292,0 1 201170772 rs10157730 A G 1771.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-4.600e+02;SOR=2.564;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1800,132,0 1 201170824 rs10158976 C G 2477.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-1.326e+03;SOR=1.233;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2506,181,0 1 201171007 rs10800762 T G 1428.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.02;SB=-3.190e+02;SOR=2.780;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1457,105,0 1 201175075 rs10920142 C G 919.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=-1.901e+02;SOR=2.833;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:69:948,69,0 1 201175227 rs832156 C A 2734.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;SB=-1.229e+03;SOR=1.130;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:2763,211,0 1 201175715 rs1341631 G T 2424.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-1.183e+03;SOR=1.002;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2453,184,0 1 201176018 rs10753895 A G 1597.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;SB=-7.460e+02;SOR=1.179;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1626,120,0 1 201176108 rs12094334 G A 1769.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-9.590e+02;SOR=0.922;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1798,135,0 1 201176968 rs12063867 A G 1625.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-8.670e+02;SOR=1.179;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1654,120,0 1 201177246 rs72751165 T C 4408.77 PASS AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-2.489e+03;SOR=0.766;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,141:141:99:4437,328,0 1 201177278 rs7551098 C T 4049.77 PASS AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=-2.420e+03;SOR=0.707;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,141:141:99:4078,304,0 1 201177538 rs7551538 G T 2413.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-1.293e+03;SOR=0.955;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2442,181,0 1 201178470 rs12757706 G A 3082.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.3950;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-1.465e+03;SOR=1.014;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:103:99:3111,238,0 1 201180501 rs71635536 T C 3339.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4674;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=1;MQRankSum=5.306;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.83;ReadPosRankSum=-2.306;SB=-1.872e+03;SOR=0.435;VQSLOD=1.04;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:4,116:120:99:3368,227,0 1 201181217 rs12070918 A G 4216.77 PASS AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.44;SB=-1.981e+03;SOR=1.259;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,130:130:99:4245,307,0 1 201181223 rs12070919 A G 4241.77 PASS AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.38;SB=-2.123e+03;SOR=1.187;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,131:131:99:4270,307,0 1 201181920 rs12060924 G T 4214.77 PASS AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-2.510e+03;SOR=0.842;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,142:143:99:4243,319,0 1 201182779 rs2282413 A G 2292.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=-7.310e+02;SOR=2.062;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2321,169,0 1 201183363 rs2282415 C T 1777.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.32;SB=-7.040e+02;SOR=1.609;VQSLOD=7.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1806,132,0 1 201183402 rs1568810 T C 2085.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-1.023e+03;SOR=1.054;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2114,157,0 1 201184275 rs2275673 C T 773.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-2.800e+02;SOR=1.893;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:802,60,0 1 201184294 rs34052252 C T 248.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.561;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-0.123;SB=-5.700e+01;SOR=1.981;VQSLOD=5.77;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:277,0,241 1 201187764 rs10920144 T C 2208.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.68;SB=-1.335e+03;SOR=0.749;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2237,169,0 1 201187828 rs3738268 T C 1860.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.36;SB=-9.230e+02;SOR=1.445;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:1889,141,0 1 201187954 rs6667020 C T 442.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.60;SB=0.00;SOR=5.136;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:471,36,0 1 201193668 rs6687494 G T 1339.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-5.110e+02;SOR=1.609;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1368,102,0 1 201195119 rs3738270 C T 2702.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-1.655e+03;SOR=0.906;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:2731,202,0 1 201197331 rs3753971 G A 669.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.01;SB=0.00;SOR=5.892;VQSLOD=8.90;culprit=DP GT:AD:DP:GQ:PL 1/1:0,18:18:54:698,54,0 1 201282167 rs1772860 C G 842.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.83;SB=-7.997e+01;SOR=4.003;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:63:871,63,0 1 201285759 rs1779297 A G 3906.77 PASS AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.3037;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-2.361e+03;SOR=0.854;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,132:133:99:3935,280,0 1 201285909 rs1534051 A G 1078.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.80;SB=-1.205e+02;SOR=3.981;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:84:1107,84,0 1 201286614 rs11336457 GA G 464.73 PASS AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.46;RPA=10,9;RU=A;SB=-1.391e+02;SOR=1.981;STR;VQSLOD=4.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:20:57:502,57,0 1 201286628 rs1772823 C G 766.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-2.890e+02;SOR=1.708;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:795,57,0 1 201288007 rs1794868 G A 431.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=-2.191e+02;SOR=1.112;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:33:460,33,0 1 201288898 rs1722759 A C 2929.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.47;SB=-7.860e+02;SOR=2.503;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2958,217,0 1 201289646 rs1628711 T C 640.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.17;SB=0.00;SOR=5.784;VQSLOD=8.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:669,51,0 1 201290968 rs1779292 T G 1019.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=-2.880e+02;SOR=2.376;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:75:1048,75,0 1 201291066 rs2071960 C T 2469.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.26;SB=-9.620e+02;SOR=1.609;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2498,181,0 1 201292110 rs1779288 T C 1780.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.92;SB=-5.820e+02;SOR=2.004;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1809,132,0 1 201293512 rs36076398 TG T 3497.73 PASS AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.00;RPA=3,2;RU=G;SB=-1.115e+03;SOR=1.697;STR;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:83:99:3535,247,0 1 201293970 rs1620046 C T 540.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.92;SB=-8.097e+01;SOR=3.126;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:569,42,0 1 201293985 rs854505 G A 645.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.69;SB=-7.997e+01;SOR=3.500;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:674,51,0 1 201331554 rs1104859 T G 1162.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=-7.000e+02;SOR=1.022;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:84:1191,84,0 1 201331664 rs2365652 C A 836.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-2.790e+02;SOR=2.066;VQSLOD=7.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:66:865,66,0 1 201334382 rs3729547 G A 2878.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-1.634e+03;SOR=1.044;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:2907,211,0 1 201335899 rs1573230 C T 563.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-8.097e+01;SOR=3.258;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:45:592,45,0 1 201336984 rs3729843 C T 733.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.35;SB=-3.590e+02;SOR=1.358;VQSLOD=7.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:57:762,57,0 1 201337170 rs3729842 A G 831.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;SB=-3.250e+02;SOR=1.942;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:66:860,66,0 1 201338553 rs10800776 T C 644.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.94;SB=-3.876e+01;SOR=4.514;VQSLOD=7.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:673,54,0 1 201338586 rs10920183 A G 422.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.36;SB=-4.176e+01;SOR=3.442;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:451,33,0 1 201338896 rs10920184 T C 2113.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.18;SB=-1.251e+03;SOR=0.892;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2142,154,0 1 201339043 rs12049476 C T 1230.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-5.290e+02;SOR=1.501;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:93:1259,93,0 1 201341175 rs45533739 CAGAAG C 3991.73 PASS AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.66;RPA=2,1;RU=AGAAG;SB=-1.195e+03;SOR=1.848;STR;VQSLOD=4.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:52:99:4029,154,0 1 201341341 rs868407 C T 1581.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.29;SB=-5.560e+02;SOR=1.835;VQSLOD=5.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1610,120,0 1 201353827 rs10920189 G C 738.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=-1.205e+02;SOR=3.258;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:57:767,57,0 1 201356393 rs74662114 C T 324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.657;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=-1.464;SB=-1.750e+02;SOR=0.551;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:14,15:29:99:353,0,393 1 201356428 rs4915230 C A 693.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.04;SB=-2.391e+02;SOR=1.828;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:722,54,0 1 201383616 rs2026593 A G 398.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.58;SB=-2.141e+02;SOR=1.112;VQSLOD=4.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:16:33:427,33,0 1 201383643 rs2026594 A C 783.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.845;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.03;ReadPosRankSum=0.064;SB=-3.200e+02;SOR=0.749;VQSLOD=8.17;culprit=FS GT:AD:DP:GQ:PL 1/1:1,26:27:60:812,60,0 1 201435069 rs1053582 C A 1191.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.700;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=2.707;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=1.116;SB=-7.160e+02;SOR=0.739;VQSLOD=6.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,48:94:99:1220,0,1328 1 201453289 rs576697 T C 1400.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.35;SB=-1.941e+02;SOR=3.716;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1429,114,0 1 201457639 rs35324992 GA G 282.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;RPA=3,2;RU=A;ReadPosRankSum=0.498;SB=-3.700e+01;SOR=0.446;STR;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:12,9:21:99:320,0,386 1 201687451 rs11576721 A G 642.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.803;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.517;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=1.514;SB=-1.520e+02;SOR=1.182;VQSLOD=6.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,27:59:99:671,0,858 1 201749520 rs529581 G C 700.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.455;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=4.124;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=0.658;SB=-2.280e+02;SOR=1.489;VQSLOD=7.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,27:54:99:729,0,641 1 201752429 rs527725 A C 548.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.433;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=0.201;SB=-3.277e+01;SOR=0.468;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:10,17:27:99:577,0,298 1 201754354 . C G 104.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.885;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.48;ReadPosRankSum=0.976;SB=-9.732e-01;SOR=0.631;VQSLOD=7.70;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:14:99:133,0,258 1 201754410 . CTTT C 187.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.82;RPA=17,14;RU=T;ReadPosRankSum=-1.731;SB=-7.600e+01;SOR=0.602;STR;VQSLOD=9.00;culprit=QD GT:AD:DP:GQ:PL 0/1:14,10:26:99:225,0,348 1 201754720 rs903676 G A 374.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.009;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=0.669;SB=-1.765e+00;SOR=1.493;VQSLOD=8.05;culprit=FS GT:AD:DP:GQ:PL 0/1:14,12:26:99:403,0,451 1 201763184 rs564440 T C 922.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.630;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=1.331;SB=-5.390e+02;SOR=0.836;VQSLOD=8.63;culprit=FS GT:AD:DP:GQ:PL 0/1:35,38:73:99:951,0,795 1 201763499 rs567185 C T 169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.977;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-0.276;SB=-4.076e+01;SOR=0.223;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:14:99:198,0,205 1 201763912 rs481530 T C 342.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.030;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.831;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=0.000;SB=-1.245e+02;SOR=0.112;VQSLOD=9.31;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,13:20:99:371,0,212 1 201772863 . T TG 1384.73 PASS AC=2;AF=1.00;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;RPA=3,4;RU=G;SB=-4.740e+02;SOR=1.547;STR;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:39:99:1422,108,0 1 201772891 rs41313906 G A 391.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.650;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.451;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-1.392;SB=-2.010e+02;SOR=0.333;VQSLOD=9.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,16:35:99:420,0,599 1 201816943 rs12722743 C T 282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.870;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-0.496;SB=-1.050e+02;SOR=0.657;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:19:99:311,0,277 1 201824241 TMP_ESP_1_201824241 CT C 346.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;DB;DP=30;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.56;RPA=2,1;RU=T;ReadPosRankSum=2.133;SB=-9.500e+01;SOR=1.071;STR;VQSLOD=5.48;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:19,11:30:99:384,0,765 1 201824243 rs201089128 T C 268.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.376;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.537;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.96;ReadPosRankSum=2.046;SB=-9.000e+01;SOR=1.071;VQSLOD=5.00;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:19,11:30:99:297,0,542 1 201824390 rs11576508 G A 453.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.176;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=-0.306;SB=-2.360e+02;SOR=0.693;VQSLOD=10.44;culprit=FS GT:AD:DP:GQ:PL 0/1:9,20:29:99:482,0,264 1 201832451 rs2678206 T G 1091.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.12;SB=-1.931e+02;SOR=3.126;VQSLOD=5.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:81:1120,81,0 1 201837934 . CGT C 5801.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.237;DP=179;ExcessHet=3.0103;FS=7.633;MLEAC=2;MLEAF=1.00;MQ=60.66;MQ0=0;MQRankSum=0.654;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.52;RPA=11,10;RU=GT;ReadPosRankSum=-1.125;SB=-2.481e+03;SOR=0.617;STR;VQSLOD=0.019;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:5,149:179:99:5839,277,0 1 201840059 rs150361248 GTTATT G 3988.73 PASS AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.48;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.67;RPA=2,1;RU=TTATT;SB=-1.120e+03;SOR=2.001;STR;VQSLOD=7.48;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,58:67:99:4026,175,0 1 201840464 rs2644124 T C 2089.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.9559;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.26;SB=-4.260e+02;SOR=2.948;VQSLOD=7.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:2118,160,0 1 201840537 rs12756688 G A 55.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.147;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=57.74;MQ0=0;MQRankSum=-1.046;POSITIVE_TRAIN_SITE;QD=4.65;ReadPosRankSum=1.256;SB=0.00;SOR=0.148;VQSLOD=2.46;culprit=QD GT:AD:DP:GQ:PL 0/1:9,3:13:84:84,0,332 1 201841734 rs369145147 A AAAC 532.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.20;RPA=8,9;RU=AAC;ReadPosRankSum=-0.261;SB=0.00;SOR=0.859;STR;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 0/1:11,13:24:99:570,0,450 1 201844128 rs2678203 G A 1623.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-9.070e+02;SOR=0.732;VQSLOD=7.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1652,126,0 1 201860626 rs2250377 A G 1056.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=-4.900e+02;SOR=1.418;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:78:1085,78,0 1 201865763 rs8028 A G 2575.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.03;SB=-1.385e+03;SOR=1.048;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2604,187,0 1 201868333 rs3738290 C T 434.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.599;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=4.629;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=0.318;SB=-1.310e+02;SOR=0.148;VQSLOD=10.35;culprit=FS GT:AD:DP:GQ:PL 0/1:14,17:31:99:463,0,441 1 201924504 rs3806355 T C 612.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.566;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.111;SB=-1.830e+02;SOR=0.618;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:27,22:49:99:641,0,749 1 201924749 rs3820438 G C 375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.988;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=0.036;SB=-1.720e+02;SOR=0.616;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:17,16:33:99:404,0,431 1 201966894 rs35181114 G GTT 291.73 PASS AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;POSITIVE_TRAIN_SITE;QD=19.45;RPA=14,16;RU=T;SB=0.00;SOR=5.549;STR;VQSLOD=5.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:19:39:329,39,0 1 201970562 rs4332408 T C 6108.77 PASS AC=2;AF=1.00;AN=2;DB;DP=204;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.94;SB=-3.788e+03;SOR=0.884;VQSLOD=5.65;culprit=DP GT:AD:DP:GQ:PL 1/1:0,204:204:99:6137,433,0 1 201970986 . C CA 575.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.79;RPA=1,2;RU=A;ReadPosRankSum=0.480;SB=-8.997e+01;SOR=0.473;STR;VQSLOD=7.76;culprit=FS GT:AD:DP:GQ:PL 0/1:5,15:20:99:613,0,157 1 201973565 rs3820439 G A 1100.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-0.782;SB=-6.260e+02;SOR=0.665;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:30,44:74:99:1129,0,708 1 201974712 rs12712 G C 1377.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.347;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.942;HaplotypeScore=3.3673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=-0.183;SB=-4.680e+02;SOR=0.871;VQSLOD=7.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,48:82:99:1406,0,792 1 201980119 rs2819361 C G 391.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.65;SB=-7.997e+01;SOR=2.670;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:420,30,0 1 201981862 rs2819362 T C 1720.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.17;SB=-8.390e+02;SOR=1.421;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1749,132,0 1 202092360 rs3795595 G A 2164.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-8.920e+02;SOR=1.426;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2193,166,0 1 202092415 rs3795596 A G 3435.77 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.72;SB=-1.388e+03;SOR=1.458;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:105:99:3464,256,0 1 202092580 rs7516762 T C 6255.77 PASS AC=2;AF=1.00;AN=2;DB;DP=211;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9958;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-3.583e+03;SOR=0.823;VQSLOD=5.88;culprit=DP GT:AD:DP:GQ:PL 1/1:0,211:211:99:6284,461,0 1 202107422 rs140055888 AACACAC AAC,A 1301.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.73;MQ0=0;QD=30.82;RPA=16,14,13;RU=AC;SB=-2.350e+02;SOR=2.636;STR;VQSLOD=4.82;culprit=FS GT:AD:DP:GQ:PL 1/2:0,8,13:22:99:1339,464,402,325,0,271 1 202113835 rs4989100 T G 1006.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.07;SB=0.00;SOR=6.593;VQSLOD=7.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:78:1035,78,0 1 202119308 rs7551879 T C 1437.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.252;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=1.651;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.594;SB=-4.530e+02;SOR=0.964;VQSLOD=7.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,56:119:99:1466,0,1678 1 202121643 rs10920337 G A 626.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.791;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-0.231;SB=-3.200e+01;SOR=0.648;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:22,21:44:99:655,0,742 1 202130754 rs3934648 T C 198.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.21;ReadPosRankSum=-0.556;SB=-1.550e+02;SOR=0.789;VQSLOD=8.21;culprit=QD GT:AD:DP:GQ:PL 0/1:21,11:33:99:227,0,542 1 202155543 rs2993432 A C 2315.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-1.214e+03;SOR=1.022;VQSLOD=5.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2344,172,0 1 202156135 . C CCCTCGCT 776.74 PASS AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.67;RPA=5,6;RU=CCTCGCT;SB=-2.755e+02;SOR=1.402;STR;VQSLOD=4.21;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,9:16:27:814,27,0 1 202156482 rs3010088 G A 1365.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.06;SB=-5.140e+02;SOR=1.814;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1394,102,0 1 202156628 rs3010089 A C 2063.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.66;SB=-1.107e+03;SOR=1.308;VQSLOD=5.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2092,150,0 1 202163516 rs1812761 C A 404.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.73;SB=-1.215e+02;SOR=1.981;VQSLOD=5.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:433,33,0 1 202163621 rs3120747 G A 671.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.88;SB=-4.490e+02;SOR=0.765;VQSLOD=5.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:51:700,51,0 1 202194441 rs3010067 G C 1253.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.89;SB=-2.580e+02;SOR=2.774;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:93:1282,93,0 1 202196931 rs1452070 G A 864.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-2.990e+02;SOR=1.942;VQSLOD=6.88;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,29:29:66:893,66,0 1 202197011 rs2167589 C T 608.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.118;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=4.196;HaplotypeScore=3.6144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-0.704;SB=-3.930e+02;SOR=0.419;VQSLOD=7.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,25:48:99:637,0,598 1 202304868 rs14451 T C 3110.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-1.737e+03;SOR=0.795;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:3139,232,0 1 202386075 rs2843413 T C 1726.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-8.970e+02;SOR=1.077;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1755,126,0 1 202565948 rs504261 G A 2122.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.48;SB=-1.324e+03;SOR=0.807;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2151,157,0 1 202703053 rs4310498 G A 1957.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;SB=-6.360e+02;SOR=1.981;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1986,147,0 1 202705455 rs1141109 G C 2983.77 PASS AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.88;SB=-1.982e+03;SOR=0.865;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,111:111:99:3012,220,0 1 202715244 . G GA 891.73 PASS AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.87;RPA=8,9;RU=A;SB=-4.320e+02;SOR=0.818;STR;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:33:96:929,96,0 1 202715284 rs1141108 G A 1087.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-5.420e+02;SOR=1.209;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:87:1116,87,0 1 202718028 rs1892163 A G 549.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.18;SB=0.00;SOR=5.421;VQSLOD=7.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:578,42,0 1 202718202 rs1892164 G A 1754.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.77;SB=-9.590e+02;SOR=1.197;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1783,129,0 1 202721848 rs12133311 G A 381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=0.00;SOR=4.977;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:410,33,0 1 202722277 rs4950742 G A 562.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.10;SB=-1.185e+02;SOR=2.712;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:45:591,45,0 1 202733238 rs3196669 C T 2484.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.23;SB=-1.547e+03;SOR=0.867;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2513,181,0 1 202735751 rs12140729 T C 3703.77 PASS AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.11;SB=-2.335e+03;SOR=0.709;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,123:123:99:3732,265,0 1 202743892 rs17497253 T C 490.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.165;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.998;HaplotypeScore=2.8999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=0.559;SB=-6.100e+01;SOR=1.650;VQSLOD=6.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,17:33:99:519,0,407 1 202827088 rs6687143 A G 444.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7896;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=0.00;SOR=5.421;VQSLOD=8.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:473,39,0 1 202830389 rs17445345 C T 121.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-0.700;SB=0.00;SOR=0.693;VQSLOD=10.19;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:150,0,175 1 202881609 rs10753927 T C 502.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.93;SB=-2.950e+02;SOR=0.693;VQSLOD=6.32;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,18:18:39:531,39,0 1 202888947 rs3182429 T C 729.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-2.960e+02;SOR=1.426;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:758,57,0 1 202893986 rs144674526 TCA T 726.73 PASS AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.50;RPA=2,1;RU=CA;SB=0.00;SOR=5.549;STR;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:764,45,0 1 202917697 rs72752793 T A 536.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.908;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.744;SB=-2.380e+02;SOR=0.765;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:20,21:42:99:565,0,470 1 202919851 rs16850799 G A 807.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-1.921e+02;SOR=2.753;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:66:836,66,0 1 202920300 rs2275737 A C 332.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-4.276e+01;SOR=3.258;VQSLOD=7.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:361,27,0 1 202931839 rs2232854 G A 1245.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=2.940;HaplotypeScore=3.8378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=-0.289;SB=-6.040e+02;SOR=0.434;VQSLOD=9.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,46:87:99:1274,0,1067 1 202931998 rs2232852 C A 720.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=-0.372;SB=-1.910e+02;SOR=0.682;VQSLOD=10.10;culprit=FS GT:AD:DP:GQ:PL 0/1:16,23:39:99:749,0,470 1 202932154 rs2232851 G A 2596.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=2.103;HaplotypeScore=7.2692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.97;ReadPosRankSum=0.412;SB=-1.335e+03;SOR=0.541;VQSLOD=8.35;culprit=DP GT:AD:DP:GQ:PL 0/1:59,94:154:99:2625,0,1550 1 202933992 rs1418445 G C 341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.313;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=1.269;SB=-1.100e+02;SOR=0.412;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:7,12:19:99:370,0,197 1 202934044 rs2363768 A G 235.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.43;ReadPosRankSum=-0.660;SB=-8.097e+01;SOR=0.582;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:2,9:11:52:264,0,52 1 202934764 rs56932949 TC T 536.73 PASS AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.25;SB=-2.690e+02;SOR=0.793;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:574,57,0 1 202935819 rs2232843 C A 1257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.100;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.846;HaplotypeScore=3.8992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=0.593;SB=-7.090e+02;SOR=0.527;VQSLOD=9.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,50:84:99:1286,0,885 1 202935911 rs2232842 T C 1149.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.709;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.847;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=0.090;SB=-7.640e+02;SOR=0.468;VQSLOD=10.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,43:81:99:1178,0,905 1 202977665 . G GT 438.73 PASS AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.42;RPA=8,9;RU=T;SB=0.00;SOR=5.670;STR;VQSLOD=7.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:17:48:476,48,0 1 202978032 rs1418444 C G 438.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.197;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.780;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=0.541;SB=-2.260e+02;SOR=0.235;VQSLOD=10.29;culprit=SOR GT:AD:DP:GQ:PL 0/1:11,17:28:99:467,0,278 1 202987770 rs782788 T C 425.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.058;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.166;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.52;ReadPosRankSum=-1.120;SB=-2.510e+02;SOR=0.842;VQSLOD=5.40;culprit=QD GT:AD:DP:GQ:PL 0/1:31,19:50:99:454,0,778 1 202987796 rs782787 G A 364.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.149;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.30;ReadPosRankSum=-0.819;SB=-2.090e+02;SOR=1.022;VQSLOD=6.19;culprit=QD GT:AD:DP:GQ:PL 0/1:32,18:50:99:393,0,840 1 203003870 rs782800 G A 1183.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.794;HaplotypeScore=1.8583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-0.307;SB=-6.700e+02;SOR=0.859;VQSLOD=7.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,47:90:99:1212,0,1079 1 203004627 . A AC 1773.73 PASS AC=2;AF=1.00;AN=2;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.59;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.54;RPA=5,6;RU=C;SB=-8.920e+02;SOR=0.733;STR;VQSLOD=5.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:55:99:1811,147,0 1 203004930 rs66499332 T TAGC 2059.73 PASS AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.58;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;RPA=1,2;RU=AGC;SB=-1.875e+02;SOR=4.174;STR;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:37:99:2097,102,0 1 203004980 rs11340451 CT C 836.73 PASS AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;RPA=2,1;RU=T;SB=0.00;SOR=5.994;STR;VQSLOD=8.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:20:57:874,57,0 1 203006098 rs782803 A G 380.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-4.176e+01;SOR=3.611;VQSLOD=8.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:409,33,0 1 203006179 rs782804 G A 1200.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-4.060e+02;SOR=1.981;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:90:1229,90,0 1 203006243 rs782805 A G 1838.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=-9.940e+02;SOR=1.179;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1867,141,0 1 203008174 rs61821060 G C 4395.77 PASS AC=2;AF=1.00;AN=2;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5586;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-2.620e+03;SOR=0.827;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,141:142:99:4424,325,0 1 203018190 rs6696772 G C 612.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.101;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.100;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=-1.013;SB=-4.380e+02;SOR=0.568;VQSLOD=8.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,27:50:99:641,0,650 1 203025096 rs199570318 CTTT C 400.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQ0=0;MQRankSum=1.063;QD=12.52;RPA=14,11;RU=T;ReadPosRankSum=-0.226;SB=-1.560e+02;SOR=0.948;STR;VQSLOD=2.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,16:33:99:438,0,550 1 203026203 rs903362 T G 652.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.35;SB=0.00;SOR=5.784;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:681,51,0 1 203026214 rs10753933 T G 331.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.52;ReadPosRankSum=2.631;SB=0.00;SOR=2.147;VQSLOD=7.22;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:3,10:13:74:360,0,74 1 203028371 rs61732315 G T 731.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.929;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.440;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-0.127;SB=-2.800e+02;SOR=1.121;VQSLOD=7.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,31:55:99:760,0,598 1 203028711 rs4590732 C G 573.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=9.587;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=-0.352;SB=-1.643e+02;SOR=0.035;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 0/1:18,21:39:99:602,0,630 1 203029017 rs2270546 A C 1017.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.555;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=2.491;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-1.126;SB=-2.880e+02;SOR=0.378;VQSLOD=9.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,41:85:99:1046,0,1357 1 203030685 rs2270543 T C 1088.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=-3.158;SB=-6.130e+02;SOR=0.722;VQSLOD=7.63;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:43,46:89:99:1117,0,1065 1 203036757 rs2275354 T C 1586.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.062;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.696;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=-0.869;SB=-6.070e+02;SOR=0.578;VQSLOD=8.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:73,61:134:99:1615,0,1954 1 203037474 rs3831931 CA C 842.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;DB;DP=47;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=1.931;SB=-1.610e+02;SOR=0.331;VQSLOD=8.69;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:25,21:47:99:880,0,1091 1 203040673 rs9803710 A G 893.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.35;SB=0.00;SOR=6.358;VQSLOD=7.88;culprit=DP GT:AD:DP:GQ:PL 1/1:0,23:23:69:922,69,0 1 203040740 rs11583155 T C 564.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.110;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=7.648;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.919;SB=-3.700e+01;SOR=2.303;VQSLOD=5.48;culprit=FS GT:AD:DP:GQ:PL 0/1:34,19:53:99:593,0,961 1 203040816 rs2270540 G C 1072.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.050;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=1.363;SB=-6.360e+02;SOR=0.709;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 0/1:69,45:114:99:1101,0,1839 1 203040922 rs2270541 G T 858.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.356;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.59;ReadPosRankSum=-0.369;SB=-3.610e+02;SOR=0.761;VQSLOD=8.06;culprit=QD GT:AD:DP:GQ:PL 0/1:62,38:100:99:887,0,1581 1 203045413 rs11578206 G T 526.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.535;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.598;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=1.765;SB=-1.710e+02;SOR=1.230;VQSLOD=6.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,19:49:99:555,0,658 1 203045583 rs6682652 T C 375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.735;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=7.144;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=-1.232;SB=-5.900e+01;SOR=2.387;VQSLOD=6.05;culprit=FS GT:AD:DP:GQ:PL 0/1:11,12:23:99:404,0,240 1 203053768 rs903356 T C 2959.77 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.19;SB=-2.080e+03;SOR=0.751;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:105:99:2988,211,0 1 203055101 rs4950877 A G 1025.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.449;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=4.356;HaplotypeScore=1.9150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=-0.543;SB=-2.480e+02;SOR=1.244;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 0/1:60,41:101:99:1054,0,1661 1 203098275 rs2228079 T G 3179.76 PASS AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.39;SB=-1.821e+03;SOR=0.927;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,112:112:99:3208,235,0 1 203098455 rs10920569 T C 653.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.41;SB=-8.297e+01;SOR=3.611;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:51:682,51,0 1 203137784 rs34556384 A ACT 6327.73 PASS AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.03;RPA=1,2;RU=CT;SB=-2.493e+03;SOR=1.266;STR;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,120:120:99:6365,361,0 1 203148633 rs4950927 A G 2539.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.88;SB=-1.599e+03;SOR=0.867;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2568,190,0 1 203152801 rs880633 T C 2002.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.084;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=0.499;SB=-7.360e+02;SOR=0.639;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 0/1:58,76:134:99:2031,0,1562 1 203153634 rs2071579 C G 462.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.350;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.035;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-0.930;SB=-2.420e+02;SOR=0.330;VQSLOD=9.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,21:39:99:491,0,598 1 203154532 rs1538372 A G 1348.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.410;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.242;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=-0.442;SB=-1.940e+02;SOR=1.127;VQSLOD=6.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,44:76:99:1377,0,856 1 203155882 rs4950928 G C 1233.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-8.097e+01;SOR=4.680;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:33:93:1262,93,0 1 203174864 rs4950932 T C 926.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.627;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.666;SB=-1.450e+02;SOR=0.813;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:38,32:70:99:955,0,1013 1 203174921 rs2486951 A G 1446.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.605;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-0.266;SB=-7.360e+02;SOR=0.708;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 0/1:62,60:122:99:1475,0,1620 1 203175107 rs2494296 A C 2341.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.44;SB=-3.980e+02;SOR=3.393;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2370,178,0 1 203187341 . T TGGTCAA 12548.73 PASS AC=2;AF=1.00;AN=2;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.58;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;RPA=3,4;RU=GGTCAA;SB=-4.490e+03;SOR=1.390;STR;VQSLOD=5.38;culprit=DP GT:AD:DP:GQ:PL 1/1:0,154:205:99:12586,464,0 1 203188692 rs2486958 A C 1860.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-8.310e+02;SOR=1.685;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1889,138,0 1 203191262 rs2244385 C G 564.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.72;ReadPosRankSum=-0.306;SB=-8.297e+01;SOR=0.334;VQSLOD=8.86;culprit=FS GT:AD:DP:GQ:PL 0/1:8,18:26:99:593,0,258 1 203192137 rs3820145 T C 721.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.719;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.035;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-0.406;SB=-2.970e+02;SOR=0.527;VQSLOD=9.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,31:63:99:750,0,865 1 203192448 rs3216011 GC G 786.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.06;RPA=4,3;RU=C;ReadPosRankSum=-0.670;SB=-1.360e+02;SOR=0.892;STR;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:25,24:52:99:824,0,841 1 203192567 rs2297949 G T 933.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.194;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.229;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=-0.609;SB=-1.890e+02;SOR=0.963;VQSLOD=7.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,33:60:99:962,0,756 1 203192820 rs10920586 C T 1770.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.404;DB;DP=161;Dels=0.00;ExcessHet=3.0103;FS=1.336;HaplotypeScore=2.9326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=-0.797;SB=-5.910e+02;SOR=0.815;VQSLOD=7.28;culprit=DP GT:AD:DP:GQ:PL 0/1:90,71:161:99:1799,0,2503 1 203194186 rs2297950 C T 1117.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.250;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.885;HaplotypeScore=2.6549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=0.264;SB=-4.500e+02;SOR=0.560;VQSLOD=9.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,43:84:99:1146,0,1063 1 203274536 rs6682221 C A 328.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=0.00;SOR=4.804;VQSLOD=8.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:357,30,0 1 203317162 rs7543148 C T 5781.77 PASS AC=2;AF=1.00;AN=2;DB;DP=183;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6409;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;SB=-3.279e+03;SOR=0.844;VQSLOD=6.74;culprit=DP GT:AD:DP:GQ:PL 1/1:0,183:183:99:5810,433,0 1 203322521 rs6658996 G C 389.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.84;SB=-1.633e+02;SOR=1.765;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:30:418,30,0 1 203455754 rs2233731 G A 487.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.694;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.42;ReadPosRankSum=0.306;SB=-5.600e+01;SOR=0.663;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:11,17:28:99:516,0,301 1 203465396 rs2242199 T C 1625.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.255;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=2.452;HaplotypeScore=4.4305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=0.618;SB=-6.090e+02;SOR=0.946;VQSLOD=7.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,67:127:99:1654,0,1532 1 203465570 rs2242198 C G 414.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-1.255e+02;SOR=2.147;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:443,33,0 1 203626364 rs7544854 C G 526.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.72;SB=0.00;SOR=5.421;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:555,42,0 1 203652444 rs1419114 A G 2353.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.79;SB=-1.083e+03;SOR=1.136;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2382,175,0 1 203667141 rs12030160 T G 222.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.609;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=0.733;SB=0.00;SOR=1.270;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:251,0,115 1 203667409 rs2228445 T C 3533.77 PASS AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-2.123e+03;SOR=0.825;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,111:111:99:3562,256,0 1 203667577 rs139986068 TA T 416.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;RPA=4,3;RU=A;ReadPosRankSum=0.226;SB=-5.800e+01;SOR=0.693;STR;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:16,16:34:99:454,0,464 1 203677250 rs3753036 G A 725.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.865;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.647;SB=-2.550e+02;SOR=0.643;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:31,27:58:99:754,0,836 1 203679934 rs2032018 A G 1548.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.859;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=2.411;HaplotypeScore=6.1276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.813;SB=-6.380e+02;SOR=0.990;VQSLOD=7.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:65,59:124:99:1577,0,1749 1 203689936 rs4951112 C G 699.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.282;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=5.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=0.314;SB=-1.800e+02;SOR=1.509;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 0/1:37,22:59:99:728,0,1024 1 203698627 rs2365862 C T 361.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.637;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.84;ReadPosRankSum=0.234;SB=0.00;SOR=2.303;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 0/1:3,11:14:82:390,0,82 1 203698688 . A G 155.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.770;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=23.6415;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=0.523;QD=3.46;ReadPosRankSum=-2.541;SB=-4.200e+01;SOR=0.499;VQSLOD=0.387;culprit=QD GT:AD:DP:GQ:PL 0/1:37,8:46:99:184,0,1000 1 203740615 rs3737976 T C 2856.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-1.792e+03;SOR=0.737;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,92:92:99:2885,208,0 1 203741110 rs16852291 C T 1408.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.124;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=5.031;HaplotypeScore=3.4888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=2.151;SB=-6.640e+02;SOR=0.293;VQSLOD=8.50;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:60,54:114:99:1437,0,1589 1 203741368 rs3737973 C A 1184.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.85;SB=-1.543e+02;SOR=3.675;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:93:1213,93,0 1 203766827 rs872032 T C 1587.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-9.460e+02;SOR=0.770;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1616,123,0 1 203787700 rs4951260 T C 797.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.69;SB=-1.055e+02;SOR=3.352;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:826,60,0 1 203803016 rs6694647 A G 2023.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-7.700e+02;SOR=1.839;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2052,147,0 1 203821200 rs7512877 G A 1101.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7822;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.39;SB=-1.135e+02;SOR=3.611;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:87:1130,87,0 1 203923829 rs9660474 A G 102.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.56;ReadPosRankSum=-0.163;SB=-1.765e+00;SOR=0.941;VQSLOD=9.75;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:99:131,0,230 1 204006095 rs41264273 A G 2781.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.338;DB;DP=177;Dels=0.00;ExcessHet=3.0103;FS=3.038;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=1.116;SB=-1.023e+03;SOR=0.461;VQSLOD=5.62;culprit=DP GT:AD:DP:GQ:PL 0/1:79,98:177:99:2810,0,1987 1 204006451 rs41264275 G A 363.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.218;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=1.364;SB=-1.780e+02;SOR=0.180;VQSLOD=8.10;culprit=SOR GT:AD:DP:GQ:PL 0/1:6,12:18:99:392,0,184 1 204006538 rs4951291 T C 854.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.19;SB=-1.603e+02;SOR=3.014;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:66:883,66,0 1 204006597 rs4951039 G A 1547.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.65;SB=-3.700e+02;SOR=2.511;VQSLOD=7.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1576,120,0 1 204010389 rs10437107 G T 499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.32;SB=-1.941e+02;SOR=1.473;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:528,39,0 1 204082323 rs760312 C T 155.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.123;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=1.278;SB=0.00;SOR=0.399;VQSLOD=9.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,6:15:99:184,0,280 1 204094902 rs2692010 T C 564.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.58;SB=-3.876e+01;SOR=4.047;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:593,45,0 1 204103618 rs2293335 G A 1721.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.11;SB=-3.420e+02;SOR=2.790;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1750,132,0 1 204110334 rs10793755 A G 2034.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.82;SB=-7.000e+02;SOR=2.019;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2063,163,0 1 204115934 rs2293337 C T 1663.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.951;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=3.224;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-1.704;SB=-8.930e+02;SOR=0.724;VQSLOD=6.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,63:129:99:1692,0,1815 1 204120952 rs3737655 G T 490.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.738;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=-0.047;SB=-2.580e+02;SOR=0.693;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:18,18:36:99:519,0,534 1 204124370 rs3215332 AC A 628.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;DB;DP=62;ExcessHet=3.0103;FS=2.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;RPA=5,4;RU=C;ReadPosRankSum=0.267;SB=-1.430e+02;SOR=1.179;STR;VQSLOD=7.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,22:62:99:666,0,1243 1 204124648 rs2887284 C A 164.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=-0.411;SB=0.00;SOR=1.085;VQSLOD=10.45;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:193,0,135 1 204124865 rs2368564 C T 3566.77 PASS AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.24;SB=-2.350e+03;SOR=0.693;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,122:122:99:3595,265,0 1 204125089 rs3795575 G A 329.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.396;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-0.653;SB=-1.290e+02;SOR=0.495;VQSLOD=10.35;culprit=FS GT:AD:DP:GQ:PL 0/1:12,13:25:99:358,0,340 1 204125272 rs3795574 C A 975.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.314;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.464;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=-0.764;SB=-2.960e+02;SOR=1.280;VQSLOD=7.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,35:70:99:1004,0,885 1 204125987 rs3730103 T C 378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.287;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=4.266;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=-1.363;SB=-1.100e+02;SOR=0.191;VQSLOD=9.62;culprit=SOR GT:AD:DP:GQ:PL 0/1:19,13:32:99:407,0,582 1 204126378 rs3730102 G A 815.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.082;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=1.419;SB=-1.170e+02;SOR=0.668;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 0/1:36,29:65:99:844,0,1006 1 204129554 rs1917539 T C 306.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.89;ReadPosRankSum=-0.349;SB=0.00;SOR=2.494;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 0/1:2,9:11:42:335,0,42 1 204130376 rs2272237 G C 818.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.677;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=0.631;SB=-2.870e+02;SOR=0.784;VQSLOD=7.99;culprit=FS GT:AD:DP:GQ:PL 0/1:52,33:85:99:847,0,1448 1 204131186 rs5705 T G 809.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.948;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=-0.188;SB=-3.650e+02;SOR=0.687;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:38,35:73:99:838,0,982 1 204161947 rs12998 C T 3431.77 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-1.811e+03;SOR=1.069;VQSLOD=5.91;culprit=DP GT:AD:DP:GQ:PL 1/1:0,110:110:99:3460,256,0 1 204162142 rs10158616 G T 474.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.17;SB=0.00;SOR=5.283;VQSLOD=8.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:503,39,0 1 204167398 rs72749749 C T 442.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.31;SB=0.00;SOR=5.136;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:471,36,0 1 204167672 rs3795573 T C 3254.77 PASS AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.32;SB=-1.322e+03;SOR=1.786;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,111:111:99:3283,253,0 1 204198209 rs3795571 A G 215.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=-0.063;SB=-8.700e+01;SOR=1.002;VQSLOD=10.45;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:244,0,99 1 204199614 rs10900562 C T 744.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.654;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.347;HaplotypeScore=2.8315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=0.015;SB=-2.260e+02;SOR=1.056;VQSLOD=8.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,27:60:99:773,0,852 1 204210997 rs72749769 G A 958.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.334;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=2.924;HaplotypeScore=2.9185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-1.972;SB=-4.380e+02;SOR=1.106;VQSLOD=6.84;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:49,37:86:99:987,0,1275 1 204214975 rs67340416 TACACAC T 496.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;DB;DP=25;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;RPA=15,12;RU=AC;ReadPosRankSum=-0.896;SB=-8.276e+01;SOR=0.148;STR;VQSLOD=9.79;culprit=SOR GT:AD:DP:GQ:PL 0/1:9,8:25:99:534,0,680 1 204216410 rs4951329 C T 991.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.766;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=1.617;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.27;ReadPosRankSum=0.415;SB=-5.020e+02;SOR=0.904;VQSLOD=7.45;culprit=QD GT:AD:DP:GQ:PL 0/1:65,42:107:99:1020,0,1709 1 204216468 rs4512713 C T 945.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.815;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.771;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=-0.097;SB=-5.220e+02;SOR=0.787;VQSLOD=7.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,37:97:99:974,0,1767 1 204216601 rs4288652 G A 757.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.543;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=2.017;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.47;ReadPosRankSum=0.116;SB=-3.850e+02;SOR=0.387;VQSLOD=9.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,35:80:99:786,0,1469 1 204216762 rs4245724 C T 497.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.327;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.452;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=0.203;SB=-2.750e+02;SOR=0.250;VQSLOD=10.36;culprit=SOR GT:AD:DP:GQ:PL 0/1:12,19:31:99:526,0,366 1 204218633 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G A 272.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.537;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.197;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.64;ReadPosRankSum=0.874;SB=-9.732e-01;SOR=2.303;VQSLOD=4.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,9:20:99:301,0,337 1 204234222 rs4076020 T C 1425.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.169;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=1.586;HaplotypeScore=3.6691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.990;SB=-6.640e+02;SOR=0.516;VQSLOD=8.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,55:118:99:1454,0,1693 1 204234225 rs4073136 G A 1414.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.624;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=1.638;HaplotypeScore=3.6691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=1.358;SB=-5.940e+02;SOR=0.452;VQSLOD=8.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,53:114:99:1443,0,1667 1 204237113 rs34083580 TC T 575.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;DB;DP=19;ExcessHet=3.0103;FS=5.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.30;ReadPosRankSum=-0.417;SB=-1.690e+02;SOR=1.687;VQSLOD=5.06;culprit=FS GT:AD:DP:GQ:PL 0/1:5,14:19:99:613,0,187 1 204237416 rs10900571 C T 1627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-1.553;SB=-9.450e+02;SOR=0.668;VQSLOD=8.56;culprit=FS GT:AD:DP:GQ:PL 0/1:75,65:141:99:1656,0,2002 1 204379532 rs11799830 T C 1173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.933;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=1.658;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=1.961;SB=-5.130e+02;SOR=0.450;VQSLOD=8.57;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:63,47:110:99:1202,0,1943 1 204379617 rs3014626 T C 4845.77 PASS AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;SB=-2.470e+03;SOR=1.186;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,151:151:99:4874,349,0 1 204397427 rs60317484 G T 888.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.968;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=2.013;SB=-4.150e+02;SOR=0.511;VQSLOD=9.02;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:20,32:52:99:917,0,630 1 204400783 rs2271421 A G 934.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.560;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=3.065;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=0.045;SB=-2.960e+02;SOR=0.294;VQSLOD=10.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,32:53:99:963,0,580 1 204403659 rs3747636 A G 2763.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;DB;DP=241;Dels=0.00;ExcessHet=3.0103;FS=1.007;HaplotypeScore=4.7449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=-1.598;SB=-1.611e+03;SOR=0.544;VQSLOD=6.57;culprit=DP GT:AD:DP:GQ:PL 0/1:121,119:241:99:2792,0,3091 1 204403856 rs16853666 T C 249.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.703;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=4.150;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.21;ReadPosRankSum=-0.422;SB=-1.765e+00;SOR=2.636;VQSLOD=6.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,8:13:99:278,0,115 1 204409281 rs3014631 C G 3329.77 PASS AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-5.930e+02;SOR=3.375;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,99:99:99:3358,253,0 1 204410447 rs2999496 A G 429.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.06;SB=0.00;SOR=5.283;VQSLOD=9.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:458,39,0 1 204411942 rs1107339 C T 168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.819;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.136;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=1.158;SB=-9.732e-01;SOR=2.066;VQSLOD=5.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,6:15:99:197,0,262 1 204413297 rs2292459 C T 1111.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.906;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=1.970;SB=-5.470e+02;SOR=0.732;VQSLOD=8.36;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:64,43:107:99:1140,0,1625 1 204413299 rs2292460 G A 1211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.826;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=1.357;SB=-5.580e+02;SOR=0.665;VQSLOD=8.72;culprit=FS GT:AD:DP:GQ:PL 0/1:62,44:106:99:1240,0,1697 1 204416501 rs3827534 C T 514.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=-0.449;SB=-2.470e+02;SOR=0.859;VQSLOD=8.97;culprit=FS GT:AD:DP:GQ:PL 0/1:32,22:54:99:543,0,741 1 204418145 rs2271426 C T 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.331;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=-1.474;SB=-2.601e+01;SOR=1.609;VQSLOD=5.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,7:16:99:201,0,253 1 204418198 rs2271427 T C 390.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.657;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=-1.417;SB=-1.950e+02;SOR=0.283;VQSLOD=10.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,15:27:99:419,0,337 1 204418889 rs2999492 C T 192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=-2.109;SB=0.00;SOR=0.836;VQSLOD=9.26;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:6,7:13:99:221,0,208 1 204418939 rs3014637 C T 350.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.423;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=0.073;SB=-6.600e+01;SOR=0.616;VQSLOD=10.25;culprit=FS GT:AD:DP:GQ:PL 0/1:14,13:27:99:379,0,399 1 204425028 rs3765156 G A 829.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.109;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=3.819;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=0.694;SB=-3.750e+02;SOR=0.323;VQSLOD=9.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,35:68:99:858,0,924 1 204426295 rs1008833 A G 1523.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.674;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=7.421;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=-0.603;SB=-6.740e+02;SOR=1.270;VQSLOD=5.06;culprit=FS GT:AD:DP:GQ:PL 0/1:84,63:147:99:1552,0,2068 1 204426373 rs2137255 C T 656.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.897;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=1.079;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.11;ReadPosRankSum=-0.402;SB=-1.990e+02;SOR=0.463;VQSLOD=9.32;culprit=QD GT:AD:DP:GQ:PL 0/1:53,28:81:99:685,0,1616 1 204429212 rs5013460 A T 581.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.32;SB=-2.850e+02;SOR=1.179;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:610,45,0 1 204429213 rs5013459 T G 512.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.16;SB=-2.890e+02;SOR=1.061;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:39:541,39,0 1 204429215 rs5013458 T A 548.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.28;SB=-2.800e+02;SOR=1.061;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:577,42,0 1 204429216 rs5013457 A G 550.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.40;SB=-2.920e+02;SOR=1.061;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:579,42,0 1 204429285 rs2999485 A G 391.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.65;SB=-1.633e+02;SOR=1.445;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:420,30,0 1 204429838 rs2271414 C G 5276.77 PASS AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.19;SB=-2.055e+03;SOR=1.639;VQSLOD=6.30;culprit=DP GT:AD:DP:GQ:PL 1/1:0,159:159:99:5305,382,0 1 204433093 rs2271415 A C 1054.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.164;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=2.220;SB=-1.330e+02;SOR=0.892;VQSLOD=8.57;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:36,35:71:99:1083,0,1019 1 204433511 . T TC 1997.73 PASS AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;RPA=1,2;RU=C;SB=-4.500e+02;SOR=2.461;STR;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:2035,135,0 1 204433795 . G A 1644.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.925;DP=105;Dels=0.00;ExcessHet=3.0103;FS=3.030;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.66;ReadPosRankSum=-0.183;SB=-5.630e+02;SOR=0.427;VQSLOD=8.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,62:105:99:1673,0,1209 1 204434277 rs2942149 T C 830.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.11;SB=-1.383e+02;SOR=2.833;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:63:859,63,0 1 204434326 rs17847779 A G 88.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.130;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.5825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.284;SB=-2.601e+01;SOR=1.270;VQSLOD=6.89;culprit=QD GT:AD:DP:GQ:PL 0/1:16,4:20:99:117,0,407 1 204436066 rs16853773 G A 294.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.501;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.42;ReadPosRankSum=0.974;SB=-1.700e+02;SOR=0.323;VQSLOD=9.01;culprit=QD GT:AD:DP:GQ:PL 0/1:22,13:35:99:323,0,704 1 204438334 rs1124777 C T 4702.77 PASS AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4246;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.95;SB=-3.068e+03;SOR=0.732;VQSLOD=1.47;culprit=DP GT:AD:DP:GQ:PL 1/1:0,157:157:99:4731,343,0 1 204438643 rs1553921 G T 4386.77 PASS AC=2;AF=1.00;AN=2;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7822;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-2.488e+03;SOR=0.793;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,145:145:99:4415,340,0 1 204495595 . G GT 113.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=1.504;POSITIVE_TRAIN_SITE;QD=4.55;RPA=14,15;RU=T;ReadPosRankSum=0.142;SB=-2.207e+01;SOR=0.275;STR;VQSLOD=3.14;culprit=QD GT:AD:DP:GQ:PL 0/1:16,9:31:99:151,0,277 1 204505976 rs35493922 GA G 155.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.08;RPA=7,6;RU=A;ReadPosRankSum=0.167;SB=-2.403e+01;SOR=0.392;STR;VQSLOD=9.67;culprit=QD GT:AD:DP:GQ:PL 0/1:13,9:22:99:193,0,337 1 204506107 rs4245738 C T 548.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.986;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=3.878;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=-0.656;SB=-2.930e+02;SOR=0.771;VQSLOD=5.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,23:54:99:577,0,842 1 204512100 rs4252717 T C 1091.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.911;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.22;ReadPosRankSum=-1.622;SB=-1.730e+02;SOR=0.907;VQSLOD=8.66;culprit=FS GT:AD:DP:GQ:PL 0/1:19,35:54:99:1120,0,500 1 204515863 rs2290855 C T 120.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.29;ReadPosRankSum=1.148;SB=0.00;SOR=0.368;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:8,5:13:99:149,0,290 1 204516025 rs2290854 A G 919.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.251;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=-0.631;SB=-5.620e+02;SOR=0.592;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:36,36:72:99:948,0,869 1 204518842 rs4245739 C A 523.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.260;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-0.898;SB=-2.080e+02;SOR=0.523;VQSLOD=10.08;culprit=FS GT:AD:DP:GQ:PL 0/1:26,20:46:99:552,0,754 1 204586805 rs3789046 G A 265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.032;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.917;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-0.179;SB=-9.732e-01;SOR=1.721;VQSLOD=6.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,9:24:99:294,0,383 1 204587240 rs3747632 G A 1081.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.002;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.765;HaplotypeScore=1.7128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=0.504;SB=-6.760e+02;SOR=0.527;VQSLOD=9.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,48:99:99:1110,0,1435 1 204915393 rs2595960 A G 3786.77 PASS AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=-2.075e+03;SOR=1.089;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,123:123:99:3815,277,0 1 204917580 rs2068666 T G 188.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.16;ReadPosRankSum=1.063;SB=0.00;SOR=0.859;VQSLOD=9.00;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:217,0,117 1 204921258 rs12141283 A G 2438.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8245;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.03;SB=-1.367e+03;SOR=1.013;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2467,178,0 1 204931137 rs16854813 A G 571.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.995;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.18;ReadPosRankSum=-0.525;SB=-1.115e+02;SOR=0.379;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:6,21:27:99:600,0,155 1 204943285 rs2595945 A T 2169.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.45;SB=-6.260e+02;SOR=2.406;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2198,169,0 1 204943947 rs2246662 C A 1221.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.408;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=3.324;HaplotypeScore=3.3998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.29;ReadPosRankSum=0.596;SB=-4.660e+02;SOR=1.200;VQSLOD=7.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,48:75:99:1250,0,628 1 204943991 rs2246661 C T 1048.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=7.415;HaplotypeScore=4.3422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=-0.126;SB=-3.620e+02;SOR=1.739;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 0/1:25,38:63:99:1077,0,641 1 204943992 rs2794861 A G 1974.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=-8.810e+02;SOR=1.234;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:63:99:2003,147,0 1 204945618 rs12124296 G A 2244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.970;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-0.554;SB=-1.291e+03;SOR=0.732;VQSLOD=7.66;culprit=DP GT:AD:DP:GQ:PL 0/1:82,88:170:99:2273,0,2092 1 204951209 rs2278796 C T 1518.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.402;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=1.939;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=1.523;SB=-3.170e+02;SOR=0.992;VQSLOD=7.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,52:106:99:1547,0,1452 1 204954993 rs2278795 A G 485.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.127;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.260;SB=-1.020e+02;SOR=0.278;VQSLOD=10.35;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,19:34:99:514,0,464 1 204955319 rs11240324 G A 354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.796;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=2.126;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=0.628;SB=-2.701e+01;SOR=1.387;VQSLOD=6.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,13:30:99:383,0,491 1 204955329 rs11240325 A G 339.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.554;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=6.058;HaplotypeScore=1.8934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.617;SB=-5.150e-01;SOR=2.546;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 0/1:16,11:27:99:368,0,452 1 204962718 rs2841628 A G 370.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.71;SB=0.00;SOR=4.977;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:399,33,0 1 204966428 rs2802808 C G 963.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.173;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-0.140;SB=-5.560e+02;SOR=0.798;VQSLOD=8.67;culprit=FS GT:AD:DP:GQ:PL 0/1:39,39:78:99:992,0,967 1 204966690 rs2794858 G A 2001.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.42;SB=-9.600e+02;SOR=1.257;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2030,144,0 1 204966749 rs2595944 A G 1242.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-1.483e+02;SOR=3.737;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:93:1271,93,0 1 204978442 rs34914006 T TCTG 726.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;DB;DP=36;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.37;RPA=1,2;RU=CTG;ReadPosRankSum=1.874;SB=-3.250e+02;SOR=0.976;STR;VQSLOD=5.29;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:20,14:36:99:764,0,1089 1 204978533 rs1530745 A G 1076.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.10;SB=-6.770e+02;SOR=0.746;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:84:1105,84,0 1 204978643 rs1530744 C A 651.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.942;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.009;HaplotypeScore=3.4596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=0.992;SB=-3.600e+02;SOR=0.506;VQSLOD=9.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,26:61:99:680,0,847 1 204978704 rs55678495 G A 811.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.073;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=1.782;HaplotypeScore=3.4082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.90;ReadPosRankSum=-0.298;SB=-5.470e+02;SOR=0.914;VQSLOD=7.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,38:82:99:840,0,1020 1 205028581 rs2305278 C G 1756.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.45;SB=-9.770e+02;SOR=0.732;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1785,132,0 1 205030862 rs41264869 C T 622.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-4.176e+01;SOR=4.615;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:51:651,51,0 1 205031116 rs2229866 C T 1873.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.74;SB=-9.160e+02;SOR=1.366;VQSLOD=4.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1902,138,0 1 205031449 rs7545698 A G 741.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.95;SB=0.00;SOR=5.994;VQSLOD=8.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:770,57,0 1 205031744 rs2242001 G A 4884.77 PASS AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.72;SB=-2.999e+03;SOR=0.693;VQSLOD=5.47;culprit=DP GT:AD:DP:GQ:PL 1/1:0,154:154:99:4913,364,0 1 205031769 rs2242000 G A 4211.77 PASS AC=2;AF=1.00;AN=2;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.05;SB=-2.607e+03;SOR=0.854;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,145:145:99:4240,313,0 1 205033283 rs1470637 G A 490.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.72;SB=-8.197e+01;SOR=3.126;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:519,39,0 1 205033374 rs2305277 T C 1771.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-6.170e+02;SOR=2.001;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1800,132,0 1 205034488 rs4460698 A G 1199.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.28;SB=-2.431e+02;SOR=2.964;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:93:1228,93,0 1 205038731 rs2305275 C T 1900.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-5.580e+02;SOR=2.419;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1929,144,0 1 205039295 rs56283998 A C 1846.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-4.530e+02;SOR=2.910;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1875,150,0 1 205041487 rs34684133 A ATGGG 768.73 PASS AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;SB=0.00;SOR=4.977;VQSLOD=8.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:806,33,0 1 205041542 rs3903399 T C 980.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.11;SB=0.00;SOR=6.518;VQSLOD=8.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:75:1009,75,0 1 205042583 rs1002926 C T 1064.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;SB=-7.597e+01;SOR=4.921;VQSLOD=5.61;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,36:36:90:1093,90,0 1 205052939 rs4950979 G A 3299.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.04;SB=-1.756e+03;SOR=0.880;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:3328,247,0 1 205053219 rs4951168 C T 5373.77 PASS AC=2;AF=1.00;AN=2;DB;DP=172;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-2.692e+03;SOR=1.057;VQSLOD=5.21;culprit=DP GT:AD:DP:GQ:PL 1/1:0,171:172:99:5402,394,0 1 205070573 rs11240358 G A 451.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.75;SB=0.00;SOR=5.283;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:480,39,0 1 205085358 rs12025836 T C 1134.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.42;SB=-4.790e+02;SOR=1.483;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:84:1163,84,0 1 205129319 rs1062715 G A 1435.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=-7.380e+02;SOR=1.270;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1464,105,0 1 205130413 rs3851294 A G 1776.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.63;SB=-6.690e+02;SOR=1.863;VQSLOD=7.35;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,58:58:99:1805,141,0 1 205131059 rs34299060 G GAC 843.73 PASS AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.54;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.72;RPA=5,6;RU=AC;SB=-1.923e+02;SOR=2.419;STR;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:20:57:881,57,0 1 205237946 . C T 510.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.099;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.46;ReadPosRankSum=-0.248;SB=-2.370e+02;SOR=0.765;VQSLOD=8.46;culprit=FS GT:AD:DP:GQ:PL 0/1:20,21:41:99:539,0,509 1 205240913 rs9659978 A G 386.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-1.225e+02;SOR=1.802;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:415,33,0 1 205272926 rs1106201 C T 2032.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.806;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9681;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.27;ReadPosRankSum=-0.933;SB=-1.151e+03;SOR=0.321;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:1,64:66:99:2061,156,0 1 205272983 rs1106202 C G 2161.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=-1.152e+03;SOR=1.000;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2190,160,0 1 205274174 rs10793728 A G 866.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-6.997e+01;SOR=4.255;VQSLOD=7.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:72:895,72,0 1 205275061 rs4951194 C T 437.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.23;SB=0.00;SOR=5.136;VQSLOD=8.22;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,12:12:36:466,36,0 1 205275206 rs4951195 A T 2224.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-1.110e+03;SOR=1.209;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2253,169,0 1 205275207 rs4951196 G T 2161.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.21;SB=-1.115e+03;SOR=1.209;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2190,163,0 1 205275421 rs4951197 A G 2682.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5584;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.94;SB=-1.181e+03;SOR=1.423;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:85:99:2711,196,0 1 205290794 rs3738746 G A 517.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.440;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.966;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=1.321;SB=-2.590e+02;SOR=0.704;VQSLOD=5.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,18:35:99:546,0,488 1 205290965 rs35321028 C T 209.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.783;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-0.822;SB=-2.602e+01;SOR=0.693;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:238,0,223 1 205307789 rs11240441 G A 761.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.632;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=1.262;SB=-3.440e+02;SOR=0.701;VQSLOD=8.82;culprit=FS GT:AD:DP:GQ:PL 0/1:34,29:63:99:790,0,861 1 205308335 rs1105385 G A 1210.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.439;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=1.247;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=-0.569;SB=-2.070e+02;SOR=0.437;VQSLOD=9.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,43:91:99:1239,0,1326 1 205308368 rs1105387 C T 1630.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.967;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.757;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=-0.655;SB=-5.250e+02;SOR=0.569;VQSLOD=8.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:71,64:135:99:1659,0,1986 1 205308591 rs1105388 C T 1910.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.392;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=4.772;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=-1.113;SB=-7.370e+02;SOR=0.381;VQSLOD=8.43;culprit=FS GT:AD:DP:GQ:PL 0/1:58,71:129:99:1939,0,1539 1 205312280 rs7549293 C G 598.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.94;SB=-1.135e+02;SOR=3.056;VQSLOD=7.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:51:627,51,0 1 205312848 rs7526701 G A 58.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.34;ReadPosRankSum=-0.778;SB=0.00;SOR=0.180;VQSLOD=8.90;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:87:87,0,281 1 205325609 rs2298250 C A 2057.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.98;SB=-1.312e+03;SOR=0.840;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2086,154,0 1 205385498 rs6688045 C T 2402.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-1.361e+03;SOR=0.859;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2431,181,0 1 205492756 rs7529442 A G 2822.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=-1.649e+03;SOR=0.741;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2851,208,0 1 205494397 rs12126241 G A 2118.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.60;SB=-5.470e+02;SOR=2.566;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2147,157,0 1 205494508 rs12126276 G A 378.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.43;SB=0.00;SOR=4.977;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:407,33,0 1 205494512 rs12122797 A G 367.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=0.00;SOR=4.804;VQSLOD=8.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:396,30,0 1 205495392 rs2297837 A G 4819.77 PASS AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-2.165e+03;SOR=1.219;VQSLOD=5.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,143:143:99:4848,355,0 1 205495976 rs1544154 A G 4076.77 PASS AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-1.852e+03;SOR=1.249;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,132:132:99:4105,307,0 1 205498343 rs4951235 C G 437.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-9.651e+01;SOR=1.981;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:466,36,0 1 205499355 rs12042887 C A 1282.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.29;SB=-5.240e+02;SOR=1.666;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:96:1311,96,0 1 205499495 rs12035825 G A 3003.77 PASS AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.07;SB=-2.058e+03;SOR=0.750;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,107:107:99:3032,217,0 1 205499577 rs6668356 C G 2322.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;SB=-6.180e+02;SOR=2.303;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2351,172,0 1 205499595 rs41264891 G A 2222.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.09;SB=-4.770e+02;SOR=2.584;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:2251,169,0 1 205499611 rs41264893 C T 1930.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=-6.050e+02;SOR=2.066;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1959,147,0 1 205499701 rs12748821 T C 1198.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-6.140e+02;SOR=1.292;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:87:1227,87,0 1 205499921 rs11240505 C G 454.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.80;SB=-3.876e+01;SOR=3.611;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:13:36:483,36,0 1 205555145 rs7531623 G A 412.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-7.697e+01;SOR=2.833;VQSLOD=7.13;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,13:13:33:441,33,0 1 205561494 rs72128490 CTCT C 444.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;DB;DP=19;ExcessHet=3.0103;FS=3.214;MLEAC=1;MLEAF=0.500;MQ=60.57;MQ0=0;MQRankSum=1.006;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.71;ReadPosRankSum=0.134;SB=-1.150e+02;SOR=0.105;VQSLOD=0.412;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,10:19:99:482,0,327 1 205561511 rs6593956 T A 254.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.960;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.140;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=0.956;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=0.049;SB=-7.597e+01;SOR=0.132;VQSLOD=0.158;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,10:17:99:283,0,211 1 205568213 rs2282449 C T 724.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=1.166;SB=-3.030e+02;SOR=0.908;VQSLOD=9.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,29:57:99:753,0,659 1 205568390 rs2282450 T A 767.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.521;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.199;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=-0.720;SB=-4.540e+02;SOR=0.446;VQSLOD=10.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,30:47:99:796,0,467 1 205568438 rs2282451 G T 667.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.136;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=0.937;SB=-2.130e+02;SOR=0.883;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:15,25:40:99:696,0,363 1 205615791 rs6673283 A G 1238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.722;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=2.295;HaplotypeScore=2.6823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=1.134;SB=-6.610e+02;SOR=0.974;VQSLOD=6.51;culprit=QD GT:AD:DP:GQ:PL 0/1:75,59:134:99:1267,0,1826 1 205630893 rs3761916 A G 1223.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-4.540e+02;SOR=1.739;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:90:1252,90,0 1 205696671 rs1772147 G A 409.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=0.00;SOR=4.977;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:438,33,0 1 205739266 rs708723 C T 558.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.04;SB=-1.573e+02;SOR=2.303;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:19:45:587,45,0 1 205739396 rs823139 T G 2165.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.670;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.84;ReadPosRankSum=0.596;SB=-7.450e+02;SOR=0.818;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:1,63:64:99:2194,129,0 1 205740426 . C CA 212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.947;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.67;RPA=14,15;RU=A;ReadPosRankSum=1.744;SB=0.00;SOR=3.611;STR;VQSLOD=3.69;culprit=FS GT:AD:DP:GQ:PL 1/1:1,11:12:12:249,12,0 1 205764640 rs823156 G A 2647.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-1.282e+03;SOR=1.244;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2676,196,0 1 205766159 rs5780304 CA C 3508.73 PASS AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.59;RPA=3,2;RU=A;SB=-1.438e+03;SOR=1.165;STR;VQSLOD=5.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:86:99:3546,256,0 1 205779231 rs11240569 G A 2160.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.78;SB=-7.560e+02;SOR=1.981;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2189,163,0 1 205798033 rs823085 G A 449.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.03;SB=0.00;SOR=5.136;VQSLOD=7.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:478,36,0 1 205813677 rs4369285 T C 377.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=-4.276e+01;SOR=3.442;VQSLOD=7.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:406,30,0 1 205814485 rs1104899 G A 2860.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7236;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.49;SB=-1.845e+03;SOR=0.714;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:2889,211,0 1 205814497 rs1891460 T C 2944.77 PASS AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=-1.803e+03;SOR=0.713;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,99:99:99:2973,223,0 1 205884274 rs6669481 T C 1153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.869;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.774;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-0.541;SB=-5.920e+02;SOR=0.578;VQSLOD=9.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,45:99:99:1182,0,1601 1 205888272 rs7366689 T C 299.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=-0.057;SB=0.00;SOR=1.112;VQSLOD=10.36;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:328,0,188 1 205890679 rs12759719 T C 294.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.455;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.399;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=0.000;SB=-2.340e+02;SOR=0.223;VQSLOD=10.12;culprit=SOR GT:AD:DP:GQ:PL 0/1:16,14:30:99:323,0,432 1 205896475 rs7366204 C T 1168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.696;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=0.218;SB=-5.720e+02;SOR=0.645;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:33,45:78:99:1197,0,848 1 205896948 rs3811424 A G 1045.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.720;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.35;ReadPosRankSum=0.858;SB=-8.197e+01;SOR=0.465;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:26,31:57:99:1074,0,814 1 206153892 rs190686483 G A 418.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.434;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.12;MQ0=0;MQRankSum=-0.301;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=-0.357;SB=-8.900e+01;SOR=0.798;VQSLOD=3.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,16:39:99:447,0,617 1 206567165 rs2480376 T A 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.521;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=-2.345;QD=2.23;ReadPosRankSum=-1.827;SB=-9.732e-01;SOR=0.292;VQSLOD=0.648;culprit=QD GT:AD:DP:GQ:PL 0/1:68,12:80:99:207,0,2313 1 206611477 . T C 1574.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.355;DP=156;Dels=0.00;ExcessHet=3.0103;FS=2.040;HaplotypeScore=2.7789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.09;ReadPosRankSum=0.245;SB=-8.450e+02;SOR=0.893;VQSLOD=5.64;culprit=DP GT:AD:DP:GQ:PL 0/1:89,67:156:99:1603,0,2364 1 206623685 rs12725078 G T 6080.77 PASS AC=2;AF=1.00;AN=2;DB;DP=198;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.71;SB=-3.074e+03;SOR=1.179;VQSLOD=6.27;culprit=DP GT:AD:DP:GQ:PL 1/1:0,198:198:99:6109,448,0 1 206623866 rs11809494 C T 1431.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.987;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=4.151;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=0.388;SB=-1.500e+02;SOR=1.383;VQSLOD=6.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,48:87:99:1460,0,965 1 206623952 rs2483060 T C 783.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=0.00;SOR=6.184;VQSLOD=7.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:812,63,0 1 206626607 rs11120575 G A 1861.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.605;DB;DP=164;Dels=0.00;ExcessHet=3.0103;FS=4.639;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=1.309;SB=-7.390e+02;SOR=1.048;VQSLOD=6.69;culprit=DP GT:AD:DP:GQ:PL 0/1:90,74:164:99:1890,0,2426 1 206626779 rs2483059 A G 1174.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.55;SB=-1.205e+02;SOR=4.174;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:90:1203,90,0 1 206626828 rs2483058 C G 88.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.932;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.34;ReadPosRankSum=1.206;SB=0.00;SOR=0.188;VQSLOD=8.93;culprit=QD GT:AD:DP:GQ:PL 0/1:10,4:14:99:117,0,308 1 206631518 rs10864212 G T 440.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=0.00;SOR=5.136;VQSLOD=8.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:469,36,0 1 206631532 rs12565311 T A 162.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.508;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=0.567;SB=-1.765e+00;SOR=1.426;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 0/1:9,7:16:99:191,0,263 1 206634429 rs17018890 A G 1108.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.214;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=4.681;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=-0.277;SB=-6.460e+02;SOR=0.324;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 0/1:32,38:70:99:1137,0,823 1 206647742 rs1539242 A G 6923.77 PASS AC=2;AF=1.00;AN=2;DB;DP=230;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2810;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-3.685e+03;SOR=1.091;VQSLOD=4.75;culprit=DP GT:AD:DP:GQ:PL 1/1:0,229:230:99:6952,497,0 1 206647787 rs1539243 T C 6783.77 PASS AC=2;AF=1.00;AN=2;DB;DP=226;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-4.241e+03;SOR=0.766;VQSLOD=5.36;culprit=DP GT:AD:DP:GQ:PL 1/1:0,226:226:99:6812,509,0 1 206648037 rs2297546 C G 1939.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.10;SB=-1.077e+03;SOR=0.804;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1968,144,0 1 206648147 rs1953090 T G 1945.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-1.152e+03;SOR=0.925;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:1974,150,0 1 206648378 rs1059704 G A 354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.845;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=0.437;SB=-1.050e+02;SOR=0.307;VQSLOD=10.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,14:30:99:383,0,492 1 206651107 rs2297545 G A 353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.066;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.120;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=0.651;SB=-2.100e+02;SOR=0.318;VQSLOD=9.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,15:33:99:382,0,469 1 206651350 rs2297543 C T 619.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.520;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.318;SB=-1.970e+02;SOR=0.944;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:17,24:41:99:648,0,461 1 206665052 rs12059562 C T 1744.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.389;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=2.295;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=0.039;SB=-8.910e+02;SOR=0.486;VQSLOD=8.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,74:136:99:1773,0,1447 1 206665837 rs11118256 G A 916.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.646;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=3.248;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-0.198;SB=-4.560e+02;SOR=0.725;VQSLOD=6.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,33:69:99:945,0,896 1 206665896 rs2336940 C G 1070.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.695;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.841;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-0.274;SB=-5.910e+02;SOR=0.554;VQSLOD=9.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,38:82:99:1099,0,1169 1 206680983 rs2095124 A C 657.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.31;SB=-4.170e+02;SOR=1.136;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:48:686,48,0 1 206766825 rs144194477 CGA C 976.73 PASS AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.19;MQ0=0;QD=32.79;RPA=10,9;RU=GA;SB=-2.061e+02;SOR=2.670;STR;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:27:78:1014,78,0 1 206766857 . CGT C 278.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;DP=36;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=60.90;MQ0=0;MQRankSum=-1.283;POSITIVE_TRAIN_SITE;QD=8.20;RPA=17,16;RU=GT;ReadPosRankSum=0.505;SB=-1.100e+02;SOR=0.307;STR;VQSLOD=0.060;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,12:36:99:316,0,676 1 206773659 rs6662929 A G 2053.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-7.350e+02;SOR=1.828;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2082,154,0 1 206776203 rs6675741 T C 1633.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-5.570e+02;SOR=2.049;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1662,123,0 1 206943351 rs3024494 T C 1005.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.94;SB=-3.940e+02;SOR=1.949;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:81:1034,81,0 1 206944233 rs1554286 A G 3387.77 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-2.053e+03;SOR=0.849;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,108:108:99:3416,244,0 1 206944645 rs1518111 T C 1554.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-2.700e+02;SOR=3.160;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1583,117,0 1 206944861 rs1518110 A C 2015.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.64;SB=-7.180e+02;SOR=1.644;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2044,147,0 1 206972072 rs4845141 C T 258.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.907;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-0.136;SB=-1.070e+02;SOR=0.346;VQSLOD=10.24;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:287,0,204 1 207009910 rs2243170 T C 313.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=1.216;SB=-4.376e+01;SOR=0.264;VQSLOD=9.29;culprit=FS GT:AD:DP:GQ:PL 0/1:9,11:21:99:342,0,296 1 207014472 rs2243188 A C 1049.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.696;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=4.343;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=0.057;SB=-6.120e+02;SOR=0.351;VQSLOD=9.98;culprit=FS GT:AD:DP:GQ:PL 0/1:41,40:81:99:1078,0,1076 1 207014776 rs960326 C T 145.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=-0.522;SB=-4.276e+01;SOR=0.223;VQSLOD=9.92;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:174,0,136 1 207015957 rs2243191 T C 1543.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.824;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=1.633;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=1.335;SB=-9.000e+02;SOR=0.576;VQSLOD=9.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,55:99:99:1572,0,1169 1 207040577 rs2981573 G A 221.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.061;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=0.308;SB=0.00;SOR=0.307;VQSLOD=10.17;culprit=FS GT:AD:DP:GQ:PL 0/1:14,8:22:99:250,0,510 1 207040659 rs2232360 G A 980.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.969;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=3.857;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.642;SB=-2.570e+02;SOR=0.341;VQSLOD=9.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,40:92:99:1009,0,1655 1 207091138 . A AT 57.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.44;RPA=16,17;RU=T;ReadPosRankSum=1.142;SB=-3.600e+01;SOR=1.022;STR;VQSLOD=6.82;culprit=QD GT:AD:DP:GQ:PL 0/1:8,5:15:95:95,0,154 1 207134530 rs376426554 C T 847.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.984;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=3.858;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.67;ReadPosRankSum=-1.289;SB=-2.650e+02;SOR=1.329;VQSLOD=5.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,32:62:99:876,0,877 1 207195736 . G T 1994.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.718;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.662;HaplotypeScore=4.0033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.58;ReadPosRankSum=-0.185;SB=-1.195e+03;SOR=0.686;VQSLOD=7.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,72:128:99:2023,0,1412 1 207195779 rs2842726 A G 4014.77 PASS AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4794;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.74;SB=-2.305e+03;SOR=0.744;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,119:120:99:4043,295,0 1 207243851 rs923109 A G 771.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-3.690e+02;SOR=1.136;VQSLOD=6.98;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,25:25:60:800,60,0 1 207245045 rs11120137 T C 2118.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.62;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.71;SB=-5.930e+02;SOR=2.551;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2147,169,0 1 207245080 . A AT 756.73 PASS AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.26;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.09;RPA=10,11;RU=T;SB=-1.203e+02;SOR=3.334;STR;VQSLOD=4.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:34:87:794,87,0 1 207262980 rs12711513 T G 1377.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=3.325;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=1.797;SB=-7.080e+02;SOR=1.006;VQSLOD=7.24;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:61,57:118:99:1406,0,1575 1 207263829 rs6690037 A G 1505.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.595;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=4.211;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=-0.238;SB=-5.440e+02;SOR=1.270;VQSLOD=7.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,55:95:99:1534,0,969 1 207268779 rs7542292 A G 763.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.383;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.906;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=-1.203;SB=-6.697e+01;SOR=0.200;VQSLOD=8.90;culprit=SOR GT:AD:DP:GQ:PL 0/1:16,25:41:99:792,0,529 1 207288897 rs12031629 T C 176.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.502;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=2.314;SB=-3.000e+01;SOR=1.022;VQSLOD=8.69;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:10,8:18:99:205,0,271 1 207297484 rs2842707 G C 584.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=0.222;SB=-2.190e+02;SOR=0.693;VQSLOD=8.90;culprit=FS GT:AD:DP:GQ:PL 0/1:31,20:51:99:613,0,886 1 207297680 rs1126618 T C 3216.73 PASS AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.73;SB=-1.961e+03;SOR=1.093;VQSLOD=5.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,116:116:99:3245,241,0 1 207300259 rs2491393 A G 3987.77 PASS AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-1.201e+03;SOR=2.068;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,125:126:99:4016,301,0 1 207300381 rs2491394 T A 628.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.99;SB=-3.976e+01;SOR=4.294;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:657,51,0 1 207304900 rs4844573 T C 985.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=-2.041e+02;SOR=2.985;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:75:1014,75,0 1 207500293 rs4844591 C T 347.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.428;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=-1.106;SB=0.00;SOR=1.371;VQSLOD=10.07;culprit=FS GT:AD:DP:GQ:PL 0/1:6,11:17:99:376,0,194 1 207504669 rs2184476 G A 447.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.600;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-1.261;SB=-9.200e+01;SOR=0.680;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:22,17:39:99:476,0,689 1 207510289 rs2490257 T C 371.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=0.00;SOR=4.804;VQSLOD=8.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:400,30,0 1 207510548 rs10746462 A G 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=0.564;SB=0.00;SOR=0.473;VQSLOD=10.29;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:207,0,274 1 207510596 rs10746463 G A 341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.972;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=0.261;SB=-3.300e+01;SOR=0.420;VQSLOD=10.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,13:31:99:370,0,520 1 207520788 rs1257729 G A 301.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.140;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=1.553;SB=-4.076e+01;SOR=0.188;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:330,0,351 1 207532861 . C CT 784.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.323;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;RPA=20,21;RU=T;ReadPosRankSum=-0.385;SB=-2.380e+02;SOR=0.941;STR;VQSLOD=9.21;culprit=FS GT:AD:DP:GQ:PL 0/1:14,45:69:55:559,0,55 1 207646322 rs1048971 G A 1145.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.519;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=2.745;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.099;SB=-5.550e+02;SOR=0.788;VQSLOD=7.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,44:91:99:1174,0,1265 1 207652548 rs77828994 T C 1299.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.073;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=-0.515;SB=-8.450e+02;SOR=0.671;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 0/1:47,53:100:99:1328,0,1192 1 207653178 rs12032512 C G 719.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.705;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=-0.339;SB=-1.850e+02;SOR=0.481;VQSLOD=10.22;culprit=FS GT:AD:DP:GQ:PL 0/1:15,26:41:99:748,0,440 1 207653395 rs17617 C A 1377.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=-4.610e+02;SOR=1.845;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1406,105,0 1 207679229 rs4844599 T G 1114.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.924;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.961;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.335;SB=-3.520e+02;SOR=0.836;VQSLOD=7.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,41:78:99:1143,0,993 1 207679307 rs4844600 A G 4125.77 PASS AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=-2.153e+03;SOR=1.179;VQSLOD=5.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,138:139:99:4154,295,0 1 207739127 rs3886100 A G 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.645;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=1.864;SB=0.00;SOR=0.569;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:207,0,238 1 207748793 rs650877 A G 1228.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.229;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=3.620;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=-2.246;SB=-2.790e+02;SOR=1.298;VQSLOD=6.72;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:35,42:77:99:1257,0,971 1 207753275 rs614709 T C 169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.417;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=1.337;SB=0.00;SOR=0.473;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:198,0,275 1 207753345 rs2274566 C T 586.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.146;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=2.112;SB=-2.802e+01;SOR=0.749;VQSLOD=9.68;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:18,19:38:99:615,0,594 1 207753621 BGMUT_451 A G 714.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=1.352;SB=-3.110e+02;SOR=0.638;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 0/1:38,27:65:99:743,0,1084 1 207757936 rs646817 A G 889.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=8.364;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.45;ReadPosRankSum=0.728;SB=-2.203e+01;SOR=2.910;VQSLOD=5.94;culprit=FS GT:AD:DP:GQ:PL 0/1:21,30:51:99:918,0,516 1 207760773 BGMUT_454 C T 1638.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=1.445;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=0.703;SB=-8.130e+02;SOR=0.531;VQSLOD=8.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:69,64:133:99:1667,0,1774 1 207782916 rs4844609 A T 2393.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.92;SB=-1.343e+03;SOR=0.892;VQSLOD=6.68;culprit=DP GT:AD:DP:GQ:PL 1/1:0,75:75:99:2422,181,0 1 207782931 BGMUT_455 A G 777.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.907;HaplotypeScore=4.4613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=-0.217;SB=-4.470e+02;SOR=0.563;VQSLOD=9.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,31:69:99:806,0,999 1 207784968 rs3818361 A G 1406.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-8.220e+02;SOR=0.976;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1435,102,0 1 207790088 BGMUT_457 C G 2594.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.579;DB;DP=224;Dels=0.00;ExcessHet=3.0103;FS=1.669;HaplotypeScore=8.8216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=0.130;SB=-1.308e+03;SOR=0.551;VQSLOD=6.56;culprit=DP GT:AD:DP:GQ:PL 0/1:121,103:224:99:2623,0,3230 1 207795320 rs2296160 A G 1598.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.31;SB=-8.480e+02;SOR=0.963;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1627,117,0 1 207818719 rs11118237 G A 279.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.869;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.74;ReadPosRankSum=-1.292;SB=-2.190e+02;SOR=0.512;VQSLOD=9.04;culprit=QD GT:AD:DP:GQ:PL 0/1:18,14:32:99:308,0,490 1 207826095 . C CT 232.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421;DP=35;ExcessHet=3.0103;FS=6.075;MLEAC=1;MLEAF=0.500;MQ=60.31;MQ0=0;MQRankSum=1.242;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=7.51;RPA=10,11;RU=T;ReadPosRankSum=-0.241;SB=-1.200e+02;SOR=0.136;STR;VQSLOD=0.029;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,13:35:99:270,0,380 1 207850589 rs34451130 A C 141.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.21;MQ0=0;MQRankSum=-1.335;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=-1.349;SB=0.00;SOR=0.551;VQSLOD=2.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,5:11:99:170,0,207 1 207851611 rs2296158 A G 1080.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.515;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=3.943;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-1.862;SB=-7.260e+02;SOR=0.548;VQSLOD=7.35;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:45,46:91:99:1109,0,1179 1 207851760 rs2296159 G A 283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.946;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-0.232;SB=-3.000e+01;SOR=1.061;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:13,11:24:99:312,0,350 1 207857158 rs12411037 T C 1166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.299;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.978;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=0.396;SB=-3.950e+02;SOR=0.503;VQSLOD=9.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,42:83:99:1195,0,1130 1 207875175 rs4844614 G T 429.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.957;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=1.099;SB=0.00;SOR=0.638;VQSLOD=10.16;culprit=FS GT:AD:DP:GQ:PL 0/1:17,16:33:99:458,0,590 1 207881485 rs11302038 TA T 3847.73 PASS AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.01;SB=-1.717e+03;SOR=0.897;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:93:99:3885,253,0 1 207881489 rs35438924 T G 2726.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;SB=-1.524e+03;SOR=0.897;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2755,202,0 1 207881491 rs34277355 C A 2699.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-1.510e+03;SOR=0.892;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2728,202,0 1 207881557 rs6683902 A G 2607.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.68;SB=-1.145e+03;SOR=1.609;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2636,190,0 1 207883907 rs3927459 T G 2008.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.40;SB=-1.025e+03;SOR=1.057;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2037,147,0 1 207884105 rs10779386 C A 526.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.72;SB=-2.351e+02;SOR=1.609;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:42:555,42,0 1 207884107 . G A 500.77 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.82;SB=-2.391e+02;SOR=1.493;VQSLOD=5.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:39:529,39,0 1 207886150 rs1359147 C T 4512.77 PASS AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3856;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-1.463e+03;SOR=2.189;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,143:143:99:4541,337,0 1 207888739 rs7553211 G T 2053.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.52;SB=-1.229e+03;SOR=1.002;VQSLOD=6.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2082,154,0 1 207941191 rs2724374 G T 545.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=-1.971e+02;SOR=1.981;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:42:574,42,0 1 207959135 rs55828915 T A 632.79 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=30.13;ReadPosRankSum=1.737;SB=-1.135e+02;SOR=1.802;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:1,20:21:22:661,22,0 1 207959136 rs56114948 T A 626.85 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.763;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=29.85;ReadPosRankSum=1.736;SB=-1.025e+02;SOR=1.802;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:1,20:21:17:655,17,0 1 207975152 . C G 546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.783;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.296;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.39;ReadPosRankSum=0.281;SB=-2.450e+02;SOR=0.963;VQSLOD=6.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,22:38:99:575,0,452 1 208062220 . C T 627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.248;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.331;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.60;ReadPosRankSum=-0.413;SB=-1.670e+02;SOR=1.002;VQSLOD=6.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,22:43:99:656,0,530 1 208062260 rs2745952 T C 680.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.04;SB=-1.583e+02;SOR=2.531;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:709,54,0 1 208200737 rs659192 C G 974.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6594;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-1.167;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=0.297;SB=-4.340e+02;SOR=0.747;VQSLOD=2.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,36:87:99:1003,0,1317 1 208204794 rs76190764 CTGTT C 1120.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.497;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.02;RPA=2,1;RU=TGTT;ReadPosRankSum=0.827;SB=-3.260e+02;SOR=0.627;STR;VQSLOD=8.09;culprit=FS GT:AD:DP:GQ:PL 0/1:12,18:30:99:1158,0,692 1 208206946 rs6702082 C G 104.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.556;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=5.021;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.98;ReadPosRankSum=-0.057;SB=-5.000e+01;SOR=1.133;VQSLOD=5.47;culprit=QD GT:AD:DP:GQ:PL 0/1:9,6:15:99:133,0,227 1 208207839 rs3736963 G A 878.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.108;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=6.490;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=-0.117;SB=-1.540e+02;SOR=1.739;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 0/1:28,30:58:99:907,0,662 1 208208034 rs12128144 G C 680.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.107;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.705;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-0.266;SB=-2.050e+02;SOR=1.244;VQSLOD=7.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,27:52:99:709,0,655 1 208208124 rs6540448 C A 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=-0.466;SB=0.00;SOR=0.446;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:163,0,252 1 208211887 rs905100 T C 630.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.20;SB=-1.911e+02;SOR=1.981;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:48:659,48,0 1 208212397 rs2767566 A G 598.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.997;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=16.100;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-0.396;SB=-1.931e+02;SOR=0.017;VQSLOD=4.63;culprit=FS GT:AD:DP:GQ:PL 0/1:23,23:46:99:627,0,727 1 208213125 rs1751580 A G 3313.77 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.68;SB=-2.030e+03;SOR=0.808;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,108:108:99:3342,241,0 1 208219164 rs1536471 A C 696.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.849;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.399;SB=-8.800e+01;SOR=0.675;VQSLOD=8.84;culprit=FS GT:AD:DP:GQ:PL 0/1:31,24:55:99:725,0,939 1 208224955 rs1555948 G C 356.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.633;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-1.475;SB=0.00;SOR=0.569;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:15,13:28:99:385,0,512 1 208224957 rs681429 C T 942.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.92;SB=0.00;SOR=6.666;VQSLOD=8.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:78:971,78,0 1 208225909 rs841865 G A 835.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.914;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=4.692;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-0.510;SB=-4.810e+02;SOR=0.297;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:40,35:75:99:864,0,1021 1 208252489 rs2274445 T C 706.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.061;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-0.913;SB=-3.420e+02;SOR=0.716;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:33,24:57:99:735,0,792 1 208255877 rs6540453 T C 2461.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5310;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.96;SB=-9.120e+02;SOR=2.066;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2490,193,0 1 208276399 rs367897509 C CCTCT 2924.73 PASS AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.16;RPA=4,6;RU=CT;SB=-5.570e+02;SOR=2.885;STR;VQSLOD=4.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:45:99:2962,133,0 1 208390086 rs1664227 G C 1197.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.854;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=7.804;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-1.446;SB=-5.050e+02;SOR=0.242;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 0/1:44,47:91:99:1226,0,1361 1 208390469 rs3748735 C T 1498.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.396;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.656;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=0.318;SB=-8.320e+02;SOR=0.627;VQSLOD=9.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:71,56:127:99:1527,0,1794 1 208391254 rs2782948 C T 2253.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.597;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=4.574;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.33;ReadPosRankSum=-0.408;SB=-9.310e+02;SOR=0.383;VQSLOD=8.68;culprit=FS GT:AD:DP:GQ:PL 0/1:60,78:138:99:2282,0,1605 1 208871055 rs1166871 G T 387.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.70;SB=-2.381e+02;SOR=0.976;VQSLOD=5.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:30:416,30,0 1 209346655 rs150429969 C T 302.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=0.184;SB=-8.900e+01;SOR=0.784;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:15,13:28:99:331,0,437 1 209346731 rs10863758 G A 97.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.276;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.52;ReadPosRankSum=-2.458;SB=-5.800e+01;SOR=0.799;VQSLOD=4.16;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:8,5:13:99:126,0,239 1 209602886 . C CA 184.87 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.90;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.41;RPA=12,13;RU=A;ReadPosRankSum=-0.650;SB=0.00;SOR=2.670;STR;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 0/1:2,10:14:15:222,0,15 1 209603996 rs2294938 A G 1928.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.84;SB=-6.980e+02;SOR=1.569;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1957,147,0 1 209605636 rs3842530 TAGCAGCAGCAGC T 5263.73 PASS AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.25;RPA=13,9;RU=AGC;SB=-8.681e+02;SOR=3.086;STR;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:68:99:5301,111,0 1 209781125 rs760833 T C 413.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=3.402;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.80;ReadPosRankSum=0.438;SB=-4.800e+01;SOR=1.508;VQSLOD=6.49;culprit=QD GT:AD:DP:GQ:PL 0/1:31,16:47:99:442,0,962 1 209781417 rs71782038 TACAC T 417.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.38;RPA=12,10;RU=AC;ReadPosRankSum=1.204;SB=-1.150e+02;SOR=0.473;STR;VQSLOD=8.89;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:21:99:455,0,173 1 209782545 rs9430006 A G 569.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.462;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.174;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=-0.073;SB=-1.080e+02;SOR=0.223;VQSLOD=9.88;culprit=SOR GT:AD:DP:GQ:PL 0/1:18,20:38:99:598,0,561 1 209784663 rs10746421 A C 1459.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.25;SB=-4.176e+01;SOR=5.838;VQSLOD=5.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1488,111,0 1 209784927 rs2076230 G T 1248.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.281;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=1.169;SB=-5.120e+02;SOR=0.602;VQSLOD=9.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,46:76:99:1277,0,843 1 209785011 rs2076226 G C 1561.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.47;SB=-8.640e+02;SOR=0.693;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1590,117,0 1 209785206 rs11119315 G A 1257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=2.432;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=0.500;SB=-7.360e+02;SOR=0.475;VQSLOD=9.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,54:114:99:1286,0,1555 1 209785957 rs2272879 T G 1097.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.27;SB=-4.350e+02;SOR=1.352;VQSLOD=6.52;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,33:33:84:1126,84,0 1 209786078 rs2272880 G A 2777.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.55;SB=-1.417e+03;SOR=1.265;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:2806,211,0 1 209788703 rs1049607 T C 3054.77 PASS AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-1.278e+03;SOR=1.728;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:102:99:3083,238,0 1 209790707 rs41274828 C G 309.41 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.94;ReadPosRankSum=1.036;SB=0.00;SOR=3.258;VQSLOD=4.80;culprit=FS GT:AD:DP:GQ:PL 0/1:1,9:10:8:337,0,8 1 209791929 rs2076222 G T 1578.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.560;DB;DP=160;Dels=0.00;ExcessHet=3.0103;FS=7.067;HaplotypeScore=2.6812;MLEAC=1;MLEAF=0.500;MQ=60.07;MQ0=0;MQRankSum=-0.814;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=1.387;SB=-9.010e+02;SOR=0.524;VQSLOD=0.241;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:95,65:160:99:1607,0,2437 1 209792015 . A AC 5714.73 PASS AC=2;AF=1.00;AN=2;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.25;RPA=1,2;RU=C;SB=-2.071e+03;SOR=1.416;STR;VQSLOD=5.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,128:134:99:5752,385,0 1 209796662 rs60927005 T C 926.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.659;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.102;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=0.124;SB=-3.940e+02;SOR=1.012;VQSLOD=7.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,33:63:99:955,0,890 1 209797198 rs2072937 A G 1105.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=1.745;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=0.587;SB=-4.030e+02;SOR=0.936;VQSLOD=7.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,41:94:99:1134,0,1498 1 209797253 rs2229466 T C 871.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.958;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-1.111;SB=-4.640e+02;SOR=0.760;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 0/1:43,33:76:99:900,0,1151 1 209798824 rs4844860 A G 468.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.287;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=1.281;SB=-1.670e+02;SOR=1.739;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 0/1:16,17:33:99:497,0,375 1 209799205 rs2229465 A G 1313.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=2.098;SB=-7.950e+02;SOR=0.767;VQSLOD=8.20;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:62,54:116:99:1342,0,1561 1 209799253 rs2179402 A G 3266.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-1.620e+03;SOR=1.190;VQSLOD=7.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:3295,238,0 1 209800230 rs2076349 C T 2043.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.322;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=0.119;SB=-9.010e+02;SOR=0.712;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 0/1:46,78:124:99:2072,0,1191 1 209800341 rs2076350 C T 2442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.902;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.592;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=0.283;SB=-1.526e+03;SOR=0.636;VQSLOD=7.95;culprit=DP GT:AD:DP:GQ:PL 0/1:66,90:156:99:2471,0,1571 1 209800976 rs2072938 C T 1100.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.327;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=3.346;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=0.958;SB=-2.580e+02;SOR=1.166;VQSLOD=7.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,40:90:99:1129,0,1435 1 209801058 rs2072939 C T 546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.362;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.129;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=0.507;SB=-7.997e+01;SOR=0.035;VQSLOD=7.34;culprit=SOR GT:AD:DP:GQ:PL 0/1:18,21:39:99:575,0,629 1 209801569 rs2076352 A G 1046.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.170;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=1.055;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.39;ReadPosRankSum=0.049;SB=-2.620e+02;SOR=0.952;VQSLOD=7.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,37:68:99:1075,0,941 1 209802894 rs17014942 C G 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.465;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=-0.704;SB=-2.302e+01;SOR=1.493;VQSLOD=6.73;culprit=QD GT:AD:DP:GQ:PL 0/1:18,14:32:99:309,0,437 1 209804095 rs4844863 G A 1110.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;SB=-2.001e+02;SOR=3.258;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:87:1139,87,0 1 209807782 rs12410975 C T 1371.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-0.420;SB=-8.540e+02;SOR=0.586;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:46,56:102:99:1400,0,1281 1 209807815 rs2235542 T C 1600.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.853;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=4.695;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-0.573;SB=-1.049e+03;SOR=0.505;VQSLOD=8.46;culprit=FS GT:AD:DP:GQ:PL 0/1:48,62:110:99:1629,0,1257 1 209811806 rs2072942 A G 1072.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.778;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.118;SB=-2.950e+02;SOR=0.664;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:43,38:81:99:1101,0,1132 1 209811829 rs2076355 A T 1412.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.575;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=-0.121;SB=-5.070e+02;SOR=0.722;VQSLOD=9.20;culprit=FS GT:AD:DP:GQ:PL 0/1:65,57:122:99:1441,0,1674 1 209811886 rs2076356 T G 2524.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.681;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=4.521;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-0.083;SB=-1.321e+03;SOR=1.073;VQSLOD=7.02;culprit=DP GT:AD:DP:GQ:PL 0/1:75,98:173:99:2553,0,1767 1 209812063 rs2076357 T C 866.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.190;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=2.490;SB=-2.060e+02;SOR=0.655;VQSLOD=9.06;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:31,30:61:99:895,0,880 1 209849406 . T G 138.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.993;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.058;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.71;ReadPosRankSum=-0.363;SB=-6.901e+01;SOR=0.307;VQSLOD=7.75;culprit=QD GT:AD:DP:GQ:PL 0/1:11,7:18:99:167,0,298 1 209880216 . C CA 1697.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.16;RPA=2,3;RU=A;ReadPosRankSum=0.035;SB=-7.840e+02;SOR=0.633;STR;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:57,55:116:99:1735,0,2041 1 209880259 rs12086634 T G 1365.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.181;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=2.576;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-0.360;SB=-7.500e+02;SOR=0.769;VQSLOD=6.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,50:101:99:1394,0,1328 1 209880508 rs58182526 GA G 352.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;DB;DP=46;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.82;RPA=11,10;RU=A;ReadPosRankSum=1.274;SB=-9.200e+01;SOR=0.368;STR;VQSLOD=9.25;culprit=QD GT:AD:DP:GQ:PL 0/1:19,21:46:99:390,0,391 1 209905734 rs932335 G C 804.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.752;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.905;SB=-1.730e+02;SOR=0.735;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 0/1:38,29:67:99:833,0,1135 1 209918151 rs3765240 G A 119.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.463;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=0.175;SB=-6.400e+01;SOR=1.206;VQSLOD=7.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,6:11:99:148,0,109 1 209933331 rs6685077 A G 447.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.955;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=-0.081;SB=-3.400e+01;SOR=1.519;VQSLOD=9.95;culprit=FS GT:AD:DP:GQ:PL 0/1:9,17:26:99:476,0,254 1 209933540 rs2076150 A G 1696.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.723;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=2.248;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-0.193;SB=-1.012e+03;SOR=0.810;VQSLOD=7.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,63:127:99:1725,0,1758 1 209933757 rs6696463 G C 2224.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.985;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=-2.441;SB=-1.175e+03;SOR=0.648;VQSLOD=7.80;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:55,80:135:99:2253,0,1414 1 209935778 rs10489342 A G 1214.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.543;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=2.468;HaplotypeScore=6.2139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-0.504;SB=-6.310e+02;SOR=0.983;VQSLOD=7.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,51:110:99:1243,0,1459 1 209936466 rs7548219 A G 723.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=6.349;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=-1.054;SB=-3.880e+02;SOR=1.016;VQSLOD=5.72;culprit=FS GT:AD:DP:GQ:PL 0/1:41,30:71:99:752,0,1207 1 209936571 rs6540555 A G 632.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.598;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.128;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=-0.321;SB=-2.320e+02;SOR=0.984;VQSLOD=7.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,25:51:99:661,0,639 1 209936631 rs6540556 G A 274.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.358;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=0.420;SB=-2.801e+01;SOR=1.244;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 0/1:16,11:27:99:303,0,510 1 209936673 rs7536882 C G 222.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.086;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=0.270;SB=-2.302e+01;SOR=1.270;VQSLOD=7.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,8:20:99:251,0,430 1 209936914 rs17015169 C T 641.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.120;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.83;ReadPosRankSum=-1.072;SB=-4.670e+02;SOR=0.721;VQSLOD=8.28;culprit=QD GT:AD:DP:GQ:PL 0/1:51,31:82:99:670,0,1495 1 209936964 rs67192274 T TCA 1099.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=-0.323;SB=-3.760e+02;SOR=0.812;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:42,23:68:99:1137,0,2192 1 209948711 rs17015183 A C 726.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.153;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.983;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-0.160;SB=-3.950e+02;SOR=0.922;VQSLOD=7.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,27:61:99:755,0,969 1 209950681 rs649275 T C 1129.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.201;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=4.426;HaplotypeScore=15.1334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=-0.474;SB=-6.530e+02;SOR=0.358;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:36,44:83:99:1158,0,791 1 209950760 rs669694 C G 3077.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.82;SB=-1.784e+03;SOR=0.715;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:3106,229,0 1 209950848 rs41305104 G A 996.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.019;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.867;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-0.710;SB=-5.290e+02;SOR=0.576;VQSLOD=9.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,40:78:99:1025,0,1034 1 209951602 rs12083685 G A 400.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=0.219;SB=-6.800e+01;SOR=0.990;VQSLOD=10.39;culprit=FS GT:AD:DP:GQ:PL 0/1:11,14:25:99:429,0,300 1 209956542 rs7550857 C A 1715.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.527;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=2.357;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=1.644;SB=-9.570e+02;SOR=0.511;VQSLOD=9.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,62:118:99:1744,0,1553 1 209963803 rs2235373 G A 3845.77 PASS AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-1.093e+03;SOR=2.423;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,120:120:99:3874,292,0 1 209964080 rs2235371 C T 2093.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.022;DB;DP=176;Dels=0.00;ExcessHet=3.0103;FS=5.729;HaplotypeScore=3.6982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-0.025;SB=-7.560e+02;SOR=1.127;VQSLOD=6.36;culprit=DP GT:AD:DP:GQ:PL 0/1:96,80:176:99:2122,0,2586 1 209965587 rs2235375 G C 1753.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9048;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-7.720e+02;SOR=1.569;VQSLOD=8.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1782,129,0 1 209968684 rs2013162 C A 2870.77 PASS AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-1.353e+03;SOR=1.305;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:93:99:2899,214,0 1 209969902 rs7552506 G C 542.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.996;HaplotypeScore=3.5757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.09;ReadPosRankSum=1.906;SB=-1.000e+02;SOR=0.368;VQSLOD=9.28;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:12,18:31:99:571,0,360 1 210001586 rs616227 A G 767.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.368;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.131;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.654;SB=-3.180e+02;SOR=0.507;VQSLOD=9.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,28:51:99:796,0,533 1 210001713 rs674346 C A 135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=2.881;SB=0.00;SOR=0.693;VQSLOD=8.46;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,5:10:99:164,0,164 1 210003402 rs599649 T C 643.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=11.822;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.427;SB=-7.600e+01;SOR=2.490;VQSLOD=5.26;culprit=FS GT:AD:DP:GQ:PL 0/1:32,21:53:99:672,0,738 1 210004199 rs585627 C G 732.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.534;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.130;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=0.483;SB=-2.920e+02;SOR=1.055;VQSLOD=7.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,27:68:99:761,0,1202 1 210004332 rs61747285 G A 1187.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.278;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=1.695;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=-0.897;SB=-7.140e+02;SOR=0.590;VQSLOD=8.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,45:91:99:1216,0,1244 1 210006437 rs655712 G A 184.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.606;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.03;ReadPosRankSum=-0.569;SB=-9.732e-01;SOR=1.270;VQSLOD=8.73;culprit=QD GT:AD:DP:GQ:PL 0/1:16,7:23:99:213,0,456 1 210006438 rs655713 C T 177.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.933;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.73;ReadPosRankSum=-0.535;SB=-9.732e-01;SOR=1.270;VQSLOD=8.02;culprit=QD GT:AD:DP:GQ:PL 0/1:16,7:23:99:206,0,512 1 210006603 rs656566 C T 1193.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.458;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.696;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=-0.674;SB=-5.510e+02;SOR=0.832;VQSLOD=7.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:76,46:122:99:1222,0,1964 1 210006873 rs657844 T G 89.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.48;ReadPosRankSum=-2.405;SB=0.00;SOR=0.269;VQSLOD=8.25;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:99:118,0,259 1 210008367 rs685248 C G 862.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.418;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.391;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=1.065;SB=-1.770e+02;SOR=0.318;VQSLOD=8.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,29:61:99:891,0,938 1 210008673 rs686582 T G 456.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.316;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=0.655;SB=-3.400e+01;SOR=0.765;VQSLOD=10.39;culprit=FS GT:AD:DP:GQ:PL 0/1:14,15:29:99:485,0,473 1 210012102 rs1962735 A G 1440.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-8.790e+02;SOR=0.823;VQSLOD=5.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1469,105,0 1 210015568 rs10570454 GCT G 1445.73 PASS AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.74;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;RPA=2,1;RU=CT;SB=-4.980e+02;SOR=1.460;STR;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:87:1483,87,0 1 210016709 rs1415543 A T 257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.647;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=0.838;SB=-2.901e+01;SOR=0.941;VQSLOD=10.08;culprit=FS GT:AD:DP:GQ:PL 0/1:13,10:23:99:286,0,376 1 210017083 rs1073150 G A 413.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=4.738;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=-2.018;SB=-1.390e+02;SOR=0.129;VQSLOD=9.38;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:14,16:30:99:442,0,445 1 210111733 rs12025114 G A 99.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.866;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.680;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.99;ReadPosRankSum=1.881;SB=-5.150e-01;SOR=1.483;VQSLOD=4.95;culprit=QD GT:AD:DP:GQ:PL 0/1:15,5:20:99:128,0,513 1 210406940 rs624270 T C 150.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=1.030;SB=-6.200e+01;SOR=0.495;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:179,0,170 1 210407031 rs624706 G T 308.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=-0.290;SB=-1.320e+02;SOR=0.495;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:13,11:24:99:337,0,305 1 210407338 rs200920236 T A 109.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;DB;DP=28;Dels=0.04;ExcessHet=3.0103;FS=1.792;HaplotypeScore=25.3610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.415;SB=-4.200e+01;SOR=1.329;VQSLOD=3.42;culprit=QD GT:AD:DP:GQ:PL 0/1:20,7:27:99:138,0,570 1 210407339 rs34824193 T A 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;DB;DP=28;Dels=0.04;ExcessHet=3.0103;FS=0.000;HaplotypeScore=25.3610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-0.198;SB=-1.220e+02;SOR=0.970;VQSLOD=8.18;culprit=FS GT:AD:DP:GQ:PL 0/1:16,11:27:99:295,0,412 1 210414871 . G GT 500.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DP=38;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.500;MQ=60.16;MQ0=0;MQRankSum=0.038;POSITIVE_TRAIN_SITE;QD=13.18;RPA=7,8;RU=T;ReadPosRankSum=0.896;SB=-1.330e+02;SOR=0.452;STR;VQSLOD=0.235;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,21:38:99:538,0,354 1 210502580 rs10863819 A G 492.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.313;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=2.607;HaplotypeScore=10.0819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=0.417;SB=-3.100e+01;SOR=2.833;VQSLOD=6.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,16:31:99:521,0,294 1 210536078 rs2294848 C G 1635.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.953;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=6.809;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=0.517;SB=-6.710e+02;SOR=0.226;VQSLOD=8.09;culprit=FS GT:AD:DP:GQ:PL 0/1:29,60:89:99:1664,0,849 1 210536387 rs11119470 T C 190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.08;ReadPosRankSum=0.405;SB=0.00;SOR=1.085;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:219,0,124 1 210577873 rs2066721 G C 1536.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.46;SB=-9.660e+02;SOR=0.931;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1565,111,0 1 210577884 rs2294851 G A 661.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.725;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=4.180;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=-0.404;SB=-4.070e+02;SOR=0.287;VQSLOD=10.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,26:48:99:690,0,561 1 210591742 rs3215542 TG T 647.73 PASS AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.09;RPA=6,5;RU=G;SB=-3.876e+01;SOR=4.514;STR;VQSLOD=7.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:685,57,0 1 210686570 rs4545340 A G 610.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.08;SB=-3.300e+02;SOR=1.230;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:45:639,45,0 1 210686614 rs12142231 A G 135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.201;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=0.123;SB=-5.150e-01;SOR=2.303;VQSLOD=5.56;culprit=QD GT:AD:DP:GQ:PL 0/1:10,5:15:99:164,0,255 1 210761462 rs4297293 G C 2125.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.29;SB=-2.890e+02;SOR=3.912;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2154,163,0 1 210847514 rs1934615 A T 1594.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.98;SB=-1.116e+03;SOR=0.728;VQSLOD=4.10;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,57:57:99:1623,117,0 1 210847740 rs4366378 A C 814.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.750;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-0.406;SB=-4.470e+02;SOR=0.711;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:37,33:70:99:843,0,958 1 210856585 rs3135473 G T 1530.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=-8.220e+02;SOR=1.077;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1559,120,0 1 210857457 rs1135317 A G 1017.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.27;SB=-4.430e+02;SOR=1.547;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:75:1046,75,0 1 211032696 rs4951669 C G 774.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.69;SB=-2.061e+02;SOR=2.400;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:803,57,0 1 211033317 rs4951484 G T 227.84 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.78;SB=-1.891e+02;SOR=0.693;VQSLOD=4.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:18:256,18,0 1 211093590 rs1501569 C T 387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.378;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=-0.176;SB=-3.501e+01;SOR=1.085;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:10,14:24:99:416,0,307 1 211192707 rs11119658 G A 514.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.961;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-0.428;SB=-3.401e+01;SOR=0.487;VQSLOD=10.33;culprit=FS GT:AD:DP:GQ:PL 0/1:24,19:43:99:543,0,797 1 211280724 . TA T 1672.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.055;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.82;MQ0=0;MQRankSum=0.689;QD=21.17;RPA=14,13;RU=A;ReadPosRankSum=-0.133;SB=-3.380e+02;SOR=1.501;STR;VQSLOD=1.48;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:4,75:92:99:1710,139,0 1 211380770 rs7525401 T C 1189.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.596;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.768;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-0.573;SB=-4.720e+02;SOR=0.597;VQSLOD=9.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,45:105:99:1218,0,1592 1 211447435 rs5780634 CT C 232.74 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.27;RPA=10,9;RU=T;SB=0.00;SOR=4.804;STR;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:270,30,0 1 211447625 rs11580084 G A 1139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.153;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.761;HaplotypeScore=1.8320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=1.214;SB=-6.760e+02;SOR=0.874;VQSLOD=7.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,46:98:99:1168,0,1293 1 211449451 rs10732682 A G 430.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.79;SB=0.00;SOR=5.136;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:459,36,0 1 211451393 rs72088513 TATC T 280.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.59;RPA=2,1;RU=ATC;ReadPosRankSum=1.116;SB=0.00;SOR=0.569;STR;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:318,0,386 1 211451467 rs11577985 T C 601.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.511;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=8.238;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-0.271;SB=-2.610e+02;SOR=0.119;VQSLOD=7.80;culprit=FS GT:AD:DP:GQ:PL 0/1:20,24:44:99:630,0,582 1 211452529 rs10708960 TA T 337.84 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQ0=0;MQRankSum=0.530;POSITIVE_TRAIN_SITE;QD=15.36;RPA=15,14;RU=A;ReadPosRankSum=-1.723;SB=-2.777e+01;SOR=1.893;STR;VQSLOD=2.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,19:22:16:375,0,16 1 211452678 rs3767377 G A 470.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.656;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.21;MQ0=0;MQRankSum=-0.763;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=-0.338;SB=-2.220e+02;SOR=0.830;VQSLOD=1.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,20:51:99:499,0,881 1 211452728 rs3767378 G A 369.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.816;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=0.219;SB=-5.300e+01;SOR=1.847;VQSLOD=5.72;culprit=FS GT:AD:DP:GQ:PL 0/1:21,14:35:99:398,0,540 1 211527609 rs7530570 C A 531.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.24;SB=-1.513e+02;SOR=2.049;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:560,42,0 1 211527958 rs114065494 A G 246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.840;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.139;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-0.578;SB=-9.732e-01;SOR=2.115;VQSLOD=5.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,8:20:99:275,0,322 1 211529569 rs7550702 T C 213.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.43;ReadPosRankSum=-0.831;SB=0.00;SOR=1.270;VQSLOD=9.99;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:242,0,116 1 211530044 rs4951523 T G 322.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.281;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.17;ReadPosRankSum=-1.848;SB=0.00;SOR=1.244;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:6,10:16:99:351,0,144 1 211533352 rs2230779 A G 810.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.876;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=0.339;SB=-4.910e+02;SOR=0.541;VQSLOD=9.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,35:76:99:839,0,1033 1 211534056 rs2271458 A C 652.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.227;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.992;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=0.614;SB=-2.880e+02;SOR=0.838;VQSLOD=7.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,23:59:99:681,0,899 1 211538597 rs75135266 C A 544.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.174;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-0.134;SB=-1.010e+02;SOR=0.818;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:23,20:43:99:573,0,682 1 211545442 rs10717294 CT C 240.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;RPA=16,15;RU=T;ReadPosRankSum=0.213;SB=-6.214e+01;SOR=1.179;STR;VQSLOD=8.79;culprit=FS GT:AD:DP:GQ:PL 0/1:4,14:19:54:278,0,54 1 211590892 rs1877476 A G 1349.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.14;SB=-5.800e+02;SOR=1.402;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1378,99,0 1 211591135 rs1707247 T C 1019.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.14;SB=-6.930e+02;SOR=0.749;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:75:1048,75,0 1 211652755 rs11119749 T A 282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=-0.798;SB=-4.076e+01;SOR=0.527;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:5,10:15:99:311,0,154 1 211749734 rs3738198 G C 499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;SB=0.00;SOR=5.283;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:528,39,0 1 211840278 rs1542140 T C 3042.77 PASS AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-1.077e+03;SOR=2.117;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:3071,223,0 1 211846876 rs701929 A G 4229.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.777;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.0044;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.58;ReadPosRankSum=1.709;SB=-1.900e+03;SOR=0.683;VQSLOD=4.41;culprit=FS GT:AD:DP:GQ:PL 1/1:1,147:148:99:4258,325,0 1 212236157 rs4951436 G T 1302.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=-3.180e+02;SOR=2.726;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1331,99,0 1 212240050 rs370198614 C T 282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.85;ReadPosRankSum=0.803;SB=0.00;SOR=1.112;VQSLOD=8.58;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:311,0,190 1 212240063 rs3738449 G A 696.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=0.00;SOR=5.994;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:725,57,0 1 212241848 rs2248191 T C 583.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.748;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=7.918;HaplotypeScore=3.6108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=-0.399;SB=-3.580e+02;SOR=0.155;VQSLOD=7.90;culprit=FS GT:AD:DP:GQ:PL 0/1:37,24:61:99:612,0,1014 1 212251367 rs5780675 GT G 290.73 PASS AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.23;RPA=10,9;RU=T;SB=-2.977e+01;SOR=3.611;STR;VQSLOD=5.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:328,36,0 1 212251402 rs17718437 G A 246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=-0.999;SB=-3.000e+01;SOR=1.347;VQSLOD=9.98;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:275,0,283 1 212273639 rs3135474 C T 1585.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-8.550e+02;SOR=0.931;VQSLOD=6.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1614,123,0 1 212274413 rs6540718 A C 1247.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-3.970e+02;SOR=2.133;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:93:1276,93,0 1 212274503 . C CT 69.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.72;RPA=14,15;RU=T;ReadPosRankSum=-0.135;SB=0.00;SOR=1.179;STR;VQSLOD=9.22;culprit=QD GT:AD:DP:GQ:PL 0/1:3,5:12:35:107,0,35 1 212530192 rs792439 T C 1683.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.36;SB=-5.350e+02;SOR=1.911;VQSLOD=6.99;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,49:49:99:1712,126,0 1 212560327 rs792449 A G 3711.77 PASS AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.42;SB=-2.063e+03;SOR=1.028;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,122:122:99:3740,268,0 1 212615875 rs521469 T C 829.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.176;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=-1.675;SB=-3.050e+02;SOR=1.118;VQSLOD=7.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,30:66:99:858,0,930 1 212619339 rs4804 T C 1480.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=2.456;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=1.410;SB=-8.510e+02;SOR=0.485;VQSLOD=9.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,64:118:99:1509,0,1327 1 212799870 rs3122713 A G 2082.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.850;DB;DP=166;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.4055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-1.517;SB=-1.281e+03;SOR=0.703;VQSLOD=7.92;culprit=DP GT:AD:DP:GQ:PL 0/1:89,77:166:99:2111,0,2297 1 212799949 rs3795842 C T 1726.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=2.389;HaplotypeScore=1.8188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.299;SB=-6.290e+02;SOR=0.968;VQSLOD=8.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,63:127:99:1755,0,1614 1 212870292 rs2233925 C T 849.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.911;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-1.373;SB=-4.720e+02;SOR=0.469;VQSLOD=9.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,37:75:99:878,0,971 1 212873074 rs2202683 C T 148.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.661;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=1.868;SB=-6.700e+01;SOR=0.892;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:177,0,133 1 212873096 rs2202682 T C 161.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=-0.105;SB=-8.097e+01;SOR=0.223;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:95:190,0,95 1 212900434 rs33977347 C CG 486.73 PASS AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-1.040e+02;SOR=2.494;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:524,33,0 1 212900487 rs2244935 A G 1074.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.61;SB=-4.490e+02;SOR=1.609;VQSLOD=7.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:78:1103,78,0 1 212911836 rs15702 T C 3296.77 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-1.365e+03;SOR=1.462;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,108:108:99:3325,247,0 1 212912108 rs76008099 ATT A 574.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.672;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;MQRankSum=0.605;POSITIVE_TRAIN_SITE;QD=28.74;RPA=14,12;RU=T;ReadPosRankSum=0.883;SB=-3.777e+01;SOR=2.303;STR;VQSLOD=2.68;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,18:24:51:612,51,0 1 212955454 rs11120026 G A 2091.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=-1.328e+03;SOR=0.779;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2120,157,0 1 212969842 . C CT 1399.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.618;DP=79;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.71;RPA=13,14;RU=T;ReadPosRankSum=0.372;SB=-4.420e+02;SOR=0.275;STR;VQSLOD=8.96;culprit=SOR GT:AD:DP:GQ:PL 1/1:8,63:79:36:1337,36,0 1 212970375 rs1284800 A G 1149.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.82;SB=-2.061e+02;SOR=3.258;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:87:1178,87,0 1 212997872 rs112950522 GAGAGAAGAGAAGAGA G 2344.73 PASS AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.26;RPA=6,3;RU=AGAGA;SB=-2.870e+02;SOR=3.126;STR;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:22:45:2382,45,0 1 213009469 rs10864004 A G 1685.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.22;SB=-4.870e+02;SOR=2.303;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1714,126,0 1 213031158 rs1047881 C T 2763.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.20;SB=-1.116e+03;SOR=1.634;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:2792,211,0 1 213031350 rs2220949 C T 1933.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.70;SB=-8.200e+02;SOR=1.292;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1962,153,0 1 213031448 rs2201601 G C 952.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-3.590e+02;SOR=1.911;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:75:981,75,0 1 213031473 rs2201602 A C 812.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.26;SB=-1.981e+02;SOR=2.670;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:60:841,60,0 1 213031709 rs2201603 C T 424.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6221;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;SB=0.00;SOR=3.767;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:14:36:453,36,0 1 213031948 rs11120047 G C 1195.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.16;SB=-5.180e+02;SOR=1.308;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:90:1224,90,0 1 213032568 rs12023052 T A 2340.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=-1.462e+03;SOR=0.693;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2369,175,0 1 213056819 rs2644547 A G 2104.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.23;SB=-1.444e+03;SOR=0.693;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2133,151,0 1 213056892 rs12125982 A G 1710.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=-6.150e+02;SOR=1.893;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1739,126,0 1 213058852 rs7536716 T A 746.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;SB=0.00;SOR=6.091;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:775,60,0 1 213058871 rs7522693 C G 596.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.63;SB=0.00;SOR=5.784;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:625,48,0 1 213062017 rs66486342 T TTTG 1585.73 PASS AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;POSITIVE_TRAIN_SITE;QD=38.79;RPA=5,6;RU=TTG;SB=-1.010e+02;SOR=4.615;STR;VQSLOD=5.73;culprit=QD GT:AD:DP:GQ:PL 1/1:0,31:51:93:1623,93,0 1 213062067 rs10864022 T C 523.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.26;SB=0.00;SOR=5.421;VQSLOD=4.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:552,42,0 1 213068192 rs2792558 T C 830.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-4.276e+01;SOR=4.804;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:63:859,63,0 1 213068233 rs12408694 C T 1354.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-2.271e+02;SOR=3.365;VQSLOD=7.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1383,108,0 1 213068595 rs3207090 C T 1989.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=-1.049e+03;SOR=1.022;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2018,150,0 1 213124868 rs149535079 C T 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.113;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=1.637;SB=-4.076e+01;SOR=0.120;VQSLOD=9.26;culprit=SOR GT:AD:DP:GQ:PL 0/1:6,5:11:99:166,0,184 1 213124871 rs3123305 G A 138.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=1.637;SB=-3.976e+01;SOR=0.120;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:167,0,147 1 213139748 rs3738805 T G 3324.77 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5725;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-1.269e+03;SOR=1.981;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,110:110:99:3353,244,0 1 213140362 rs10779597 G A 571.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-1.145e+02;SOR=2.712;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:45:600,45,0 1 213140398 rs10779598 A C 859.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.87;SB=-4.480e+02;SOR=1.284;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:63:888,63,0 1 213146944 rs7511930 A G 847.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.28;SB=-3.130e+02;SOR=1.863;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:66:876,66,0 1 213173457 rs3738806 C T 807.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=-3.910e+02;SOR=1.382;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:60:836,60,0 1 213178340 rs11120076 G A 2606.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2846;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-1.396e+03;SOR=0.987;VQSLOD=7.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2635,202,0 1 213180441 rs71147054 G GA 271.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=0.000;QD=6.18;RPA=17,18;RU=A;ReadPosRankSum=1.313;SB=-9.800e+01;SOR=0.798;STR;VQSLOD=7.09;culprit=QD GT:AD:DP:GQ:PL 0/1:26,18:48:99:309,0,424 1 213224719 rs4951476 T C 1351.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.05;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.66;SB=-4.000e+02;SOR=1.923;VQSLOD=6.62;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,39:39:99:1380,102,0 1 213224741 . G C 687.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.49;ReadPosRankSum=0.594;SB=-2.660e+02;SOR=0.602;VQSLOD=8.04;culprit=FS GT:AD:DP:GQ:PL 0/1:25,26:51:99:716,0,635 1 213234933 . G GT 1268.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQ0=0;MQRankSum=0.933;POSITIVE_TRAIN_SITE;QD=16.92;RPA=13,14;RU=T;ReadPosRankSum=-1.404;SB=-3.600e+02;SOR=0.775;STR;VQSLOD=2.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,59:96:99:1306,0,150 1 213405414 rs11271079 GGCAACTGAGGAT G 4830.73 PASS AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;RPA=2,1;RU=GCAACTGAGGAT;SB=-1.172e+03;SOR=2.432;STR;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:37:99:4868,108,0 1 214478459 rs6540819 G A 869.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.000;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.320;HaplotypeScore=16.1670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=0.299;SB=-4.440e+02;SOR=0.355;VQSLOD=10.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,36:63:99:898,0,690 1 214491536 rs55760458 G C 1097.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.855;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-0.256;SB=-6.730e+02;SOR=0.627;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:38,46:84:99:1126,0,1018 1 214492106 rs34932055 C A 163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.895;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=0.874;SB=0.00;SOR=0.693;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:192,0,208 1 214492286 rs1134647 G A 2012.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.835;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=3.069;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.84;ReadPosRankSum=1.732;SB=-1.377e+03;SOR=0.308;VQSLOD=6.09;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,74:75:99:2041,120,0 1 214497861 rs6695148 G T 177.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.795;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=-0.244;SB=0.00;SOR=0.425;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:206,0,340 1 214500907 rs17022608 A C 700.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.122;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.421;SB=-2.090e+02;SOR=0.540;VQSLOD=10.07;culprit=FS GT:AD:DP:GQ:PL 0/1:31,27:58:99:729,0,850 1 214501190 rs3754136 C A 93.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.81;ReadPosRankSum=-1.443;SB=-4.076e+01;SOR=0.093;VQSLOD=9.34;culprit=QD GT:AD:DP:GQ:PL 0/1:7,5:12:99:122,0,254 1 214503489 rs2291830 T G 826.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.197;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.124;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-0.564;SB=-3.960e+02;SOR=1.119;VQSLOD=8.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,32:64:99:855,0,816 1 214504604 rs2270704 T C 4157.77 PASS AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-1.753e+03;SOR=1.573;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,128:129:99:4186,301,0 1 214505596 rs1874804 C T 1560.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.041;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=1.561;HaplotypeScore=4.4247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=0.371;SB=-7.070e+02;SOR=0.499;VQSLOD=9.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,61:122:99:1589,0,1623 1 214505716 rs6419474 T C 849.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.06;SB=-8.197e+01;SOR=4.091;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:878,66,0 1 214505752 rs870117 T C 216.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.06;ReadPosRankSum=-0.547;SB=0.00;SOR=1.022;VQSLOD=9.99;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:245,0,152 1 214537627 rs72757949 C T 60.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=5.229;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.08;ReadPosRankSum=0.105;SB=-4.076e+01;SOR=0.035;VQSLOD=8.59;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:89:89,0,245 1 214542819 rs1135352 T C 2589.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-1.002e+03;SOR=1.816;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2618,193,0 1 214551276 rs3013451 G A 989.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-1.523e+02;SOR=3.407;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:78:1018,78,0 1 214560293 rs2270703 G T 1145.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=8.839;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.803;SB=-4.240e+02;SOR=0.190;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 0/1:46,44:90:99:1174,0,1408 1 214564340 rs7550799 T C 3201.82 PASS AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-1.725e+03;SOR=1.158;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,107:107:99:3230,235,0 1 214564442 rs11120307 C G 686.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.945;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=-0.740;SB=-1.050e+02;SOR=0.693;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:16,22:38:99:715,0,445 1 214566845 rs7355212 A G 399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-6.697e+01;SOR=2.833;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:428,33,0 1 214566952 rs4655342 A G 963.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.54;SB=-5.160e+02;SOR=1.148;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:72:992,72,0 1 214567013 rs11322819 CG C 1723.73 PASS AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.81;RPA=7,6;RU=G;SB=-7.520e+02;SOR=1.007;STR;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1761,147,0 1 214568471 rs11120308 C A 535.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=0.00;SOR=5.421;VQSLOD=8.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:564,42,0 1 214576454 rs72757974 C A 628.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.894;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=-0.787;SB=-3.301e+01;SOR=0.340;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:22,22:44:99:657,0,739 1 214576482 rs4636427 C T 349.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.332;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=-0.507;SB=-4.076e+01;SOR=0.153;VQSLOD=10.15;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,13:28:99:378,0,450 1 214625431 rs7355177 A G 135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.989;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.078;SB=-1.765e+00;SOR=1.371;VQSLOD=9.20;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:164,0,202 1 214637882 rs7528315 A G 856.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.929;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=1.712;SB=0.00;SOR=1.055;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:18,25:43:99:885,0,555 1 214638172 rs10864100 C T 2615.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.347;DB;DP=213;Dels=0.00;ExcessHet=3.0103;FS=7.181;HaplotypeScore=2.9988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.081;SB=-9.160e+02;SOR=1.156;VQSLOD=4.45;culprit=DP GT:AD:DP:GQ:PL 0/1:115,98:213:99:2644,0,2850 1 214638319 rs10864101 T C 89.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.943;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.27;ReadPosRankSum=-1.157;SB=0.00;SOR=0.117;VQSLOD=9.36;culprit=QD GT:AD:DP:GQ:PL 0/1:16,5:21:99:118,0,521 1 214813695 rs61732045 A C 578.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.684;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.042;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-1.707;SB=-2.350e+02;SOR=0.848;VQSLOD=6.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,24:53:99:607,0,826 1 214814988 . T C 579.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.862;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.216;HaplotypeScore=3.5846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.14;ReadPosRankSum=-1.609;SB=-3.490e+02;SOR=0.446;VQSLOD=8.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,22:41:99:608,0,554 1 214821295 . C G 1494.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.589;DP=125;Dels=0.00;ExcessHet=3.0103;FS=4.653;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.96;ReadPosRankSum=-0.472;SB=-4.950e+02;SOR=1.160;VQSLOD=5.54;culprit=FS GT:AD:DP:GQ:PL 0/1:69,56:125:99:1523,0,1813 1 214826196 rs335524 G A 1739.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.1004;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-1.056e+03;SOR=0.728;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1768,129,0 1 214826364 rs335523 G A 872.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.32;SB=-2.740e+02;SOR=2.066;VQSLOD=7.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:66:901,66,0 1 214826810 . CT C 1647.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.269;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;MQRankSum=0.479;POSITIVE_TRAIN_SITE;QD=19.16;RPA=15,14;RU=T;ReadPosRankSum=-1.242;SB=-7.020e+02;SOR=0.839;STR;VQSLOD=2.86;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:7,79:98:99:1685,107,0 1 214828812 rs435043 A G 1006.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-3.260e+02;SOR=2.165;VQSLOD=7.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:75:1035,75,0 1 214830617 rs438034 A G 2697.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-1.384e+03;SOR=1.065;VQSLOD=7.47;culprit=DP GT:AD:DP:GQ:PL 1/1:0,86:86:99:2726,199,0 1 214837110 rs7289 C G 2474.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-7.460e+02;SOR=2.425;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:79:99:2503,187,0 1 215239896 rs1545505 T C 574.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=0.00;SOR=5.549;VQSLOD=8.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:603,45,0 1 215368514 rs1556907 A G 2312.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;SB=-6.997e+01;SOR=5.994;VQSLOD=4.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:62:99:2341,178,0 1 215408057 rs11120527 G T 402.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.56;SB=-3.377e+01;SOR=3.611;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:431,33,0 1 215753355 rs11803705 T G 1276.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.363;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-0.064;SB=-3.740e+02;SOR=0.743;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:52,46:98:99:1305,0,1339 1 215781574 rs3767255 A G 618.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.315;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=0.729;SB=-5.300e+01;SOR=0.787;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:37,22:59:99:647,0,1070 1 215793834 rs14137 G A 1220.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=1.648;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-0.402;SB=-8.110e+02;SOR=0.534;VQSLOD=9.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,50:94:99:1249,0,1069 1 215808007 rs56038610 G A 1243.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=3.882;HaplotypeScore=3.8312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-1.343;SB=-7.240e+02;SOR=0.610;VQSLOD=5.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,47:94:99:1272,0,1256 1 215814186 rs66968954 CA C 219.80 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.321;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;RPA=18,17;RU=A;ReadPosRankSum=-1.201;SB=-4.897e+01;SOR=0.776;STR;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 1/1:3,14:22:18:257,18,0 1 215848062 rs2009923 C T 3156.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3945;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.35;SB=-1.093e+03;SOR=1.565;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3185,238,0 1 215849044 rs4443864 C G 332.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-3.876e+01;SOR=3.258;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:361,27,0 1 215853357 rs10864183 G A 792.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.989;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.093;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=0.518;SB=-3.540e+02;SOR=0.502;VQSLOD=9.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,33:58:99:821,0,675 1 215853835 rs12140451 A G 314.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.183;HaplotypeScore=4.4305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.554;SB=-9.732e-01;SOR=2.461;VQSLOD=6.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,11:23:99:343,0,323 1 215901492 rs2820718 C T 2262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.592;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=7.302;HaplotypeScore=5.3774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=-1.154;SB=-1.245e+03;SOR=0.918;VQSLOD=3.41;culprit=FS GT:AD:DP:GQ:PL 0/1:61,89:150:99:2291,0,1644 1 216144049 rs41277210 C T 672.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.635;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=5.930;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.386;SB=-3.340e+02;SOR=0.235;VQSLOD=8.90;culprit=FS GT:AD:DP:GQ:PL 0/1:30,26:56:99:701,0,779 1 216172380 rs10864219 A G 250.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.088;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=-0.394;SB=-9.900e+01;SOR=0.375;VQSLOD=10.13;culprit=FS GT:AD:DP:GQ:PL 0/1:11,11:22:99:279,0,339 1 216246675 rs35944387 AG A 434.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.39;RPA=3,2;RU=G;ReadPosRankSum=-0.327;SB=-3.677e+01;SOR=0.223;STR;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:12,13:27:99:472,0,426 1 216348764 rs1805049 C T 3687.77 PASS AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.50;SB=-1.969e+03;SOR=1.215;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,125:125:99:3716,268,0 1 216370130 rs386851 T G 1657.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.01;SB=-2.021e+02;SOR=3.912;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1686,123,0 1 216390694 rs1324330 C T 2215.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.21;SB=-8.770e+02;SOR=1.745;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2244,172,0 1 216495191 rs7515253 T G 1380.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.278;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=1.072;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=0.908;SB=-3.920e+02;SOR=0.990;VQSLOD=6.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,49:75:99:1409,0,685 1 216495400 rs2089947 A G 1098.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.550;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-0.300;SB=-2.430e+02;SOR=0.784;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:40,38:78:99:1127,0,1081 1 216496947 rs1805050 G A 3096.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.465;HaplotypeScore=7.0062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=-0.324;SB=-1.854e+03;SOR=0.768;VQSLOD=5.56;culprit=DP GT:AD:DP:GQ:PL 0/1:128,120:250:99:3125,0,3142 1 216595306 rs10779261 C T 701.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.129;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=2.029;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=-0.105;SB=-3.360e+02;SOR=0.828;VQSLOD=7.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,27:72:99:730,0,1061 1 216692669 rs945453 C T 1240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.121;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=3.770;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-1.183;SB=-7.060e+02;SOR=0.494;VQSLOD=9.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,45:97:99:1269,0,1335 1 217604777 rs7520483 G A 285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.599;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.81;ReadPosRankSum=0.537;SB=-7.101e+01;SOR=0.551;VQSLOD=10.19;culprit=FS GT:AD:DP:GQ:PL 0/1:7,10:17:99:314,0,205 1 217671771 rs724803 C G 1423.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.299;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=7.072;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=-0.141;SB=-6.330e+02;SOR=1.123;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 0/1:39,46:86:99:1452,0,996 1 217793938 rs61132882 T TTAA 424.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQ0=0;MQRankSum=0.674;POSITIVE_TRAIN_SITE;QD=23.60;RPA=1,2;RU=TAA;ReadPosRankSum=-0.172;SB=0.00;SOR=0.693;STR;VQSLOD=3.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,9:22:99:462,0,468 1 217804325 rs944730 G A 1744.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.818;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=0.619;HaplotypeScore=2.5279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=1.001;SB=-1.036e+03;SOR=0.730;VQSLOD=8.31;culprit=DP GT:AD:DP:GQ:PL 0/1:77,66:145:99:1773,0,1913 1 217804555 rs2297522 C T 546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.641;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=8.330;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=0.115;SB=-2.810e+02;SOR=0.294;VQSLOD=5.26;culprit=FS GT:AD:DP:GQ:PL 0/1:13,19:32:99:575,0,436 1 217822135 rs12140261 G A 109.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.213;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.46;ReadPosRankSum=0.000;SB=0.00;SOR=0.193;VQSLOD=9.81;culprit=QD GT:AD:DP:GQ:PL 0/1:12,5:17:99:138,0,421 1 217856626 rs12068167 G A 629.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.1518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=0.622;SB=-2.440e+02;SOR=0.614;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:24,26:50:99:658,0,668 1 217856803 rs12073566 T C 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.873;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.93;ReadPosRankSum=0.750;SB=-1.765e+00;SOR=0.859;VQSLOD=8.99;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:171,0,394 1 217915324 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C CT 173.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;DP=23;ExcessHet=3.0103;FS=7.761;MLEAC=1;MLEAF=0.500;MQ=60.47;MQ0=0;MQRankSum=0.919;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=8.69;RPA=14,15;RU=T;ReadPosRankSum=-0.695;SB=-4.400e+01;SOR=1.901;STR;VQSLOD=0.125;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,12:23:99:211,0,139 1 218683536 rs7532551 A G 65.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.513;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.98;MQ0=0;MQRankSum=-0.473;POSITIVE_TRAIN_SITE;QD=5.98;ReadPosRankSum=0.000;SB=-3.500e+01;SOR=0.283;VQSLOD=3.10;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:94:94,0,205 1 218696903 rs41313742 C T 183.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.805;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.19;ReadPosRankSum=-0.914;SB=-9.500e+01;SOR=0.473;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:11,9:20:99:212,0,277 1 218698728 rs72738863 G A 415.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.520;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.309;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.05;ReadPosRankSum=-0.495;SB=-1.460e+02;SOR=0.382;VQSLOD=8.69;culprit=QD GT:AD:DP:GQ:PL 0/1:40,19:59:99:444,0,1179 1 219366400 . T TG 530.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;DP=64;ExcessHet=3.0103;FS=7.792;MLEAC=1;MLEAF=0.500;MQ=59.74;MQ0=0;MQRankSum=0.024;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=9.00;RPA=9,10;RU=G;ReadPosRankSum=-1.051;SB=-2.203e+01;SOR=2.093;STR;VQSLOD=0.057;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,25:64:99:568,0,854 1 219383848 rs35171262 A ACTTTTT 4937.73 PASS AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-9.990e+02;SOR=2.722;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:62:99:4975,181,0 1 219383867 rs940571 T C 2425.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.57;SB=-1.232e+03;SOR=1.382;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2454,178,0 1 219383905 rs940570 A G 3026.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.55;SB=-1.906e+03;SOR=0.770;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3055,217,0 1 219706327 rs2785986 A G 537.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.227;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=-0.095;SB=-1.260e+02;SOR=0.605;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 0/1:29,22:51:99:566,0,805 1 219706428 rs10746385 T C 1356.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=2.412;HaplotypeScore=1.8914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-1.103;SB=-9.030e+02;SOR=0.525;VQSLOD=9.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:57,57:114:99:1385,0,1511 1 220089352 rs2231734 A C 503.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.409;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.900;HaplotypeScore=4.4041;MLEAC=1;MLEAF=0.500;MQ=59.69;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.37;ReadPosRankSum=0.180;SB=-1.020e+02;SOR=1.426;VQSLOD=6.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,18:30:99:532,0,295 1 220101005 rs76160931 A C 77.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.4413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.68;ReadPosRankSum=0.593;SB=-5.150e-01;SOR=1.022;VQSLOD=6.12;culprit=QD GT:AD:DP:GQ:PL 0/1:23,6:29:99:106,0,655 1 220101008 rs79951865 A C 502.41 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.271;DB;DP=29;Dels=0.03;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.3571;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.94;ReadPosRankSum=-0.045;SB=-1.245e+02;SOR=1.609;VQSLOD=7.98;culprit=FS GT:AD:DP:GQ:PL 1/1:2,26:28:8:530,8,0 1 220101029 rs369328290 A AC 749.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.44;ReadPosRankSum=1.336;SB=-1.690e+02;SOR=0.495;VQSLOD=8.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,22:43:99:787,0,335 1 220142023 rs1061248 C T 678.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.633;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.35;ReadPosRankSum=0.990;SB=-6.800e+01;SOR=1.179;VQSLOD=9.96;culprit=FS GT:AD:DP:GQ:PL 0/1:15,22:37:99:707,0,415 1 220142070 rs1061242 C T 921.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=2.232;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=-0.623;SB=-3.820e+02;SOR=0.420;VQSLOD=9.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,36:70:99:950,0,919 1 220145371 rs2795315 T G 509.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=-4.276e+01;SOR=3.126;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:538,39,0 1 220151808 rs35391458 C CAA 660.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.46;ReadPosRankSum=0.471;SB=0.00;SOR=1.230;VQSLOD=8.44;culprit=FS GT:AD:DP:GQ:PL 0/1:8,13:21:99:698,0,382 1 220153332 . T TAA 2261.73 PASS AC=2;AF=1.00;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;POSITIVE_TRAIN_SITE;QD=37.45;RPA=2,4;RU=A;SB=-5.610e+02;SOR=2.256;STR;VQSLOD=4.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:2299,148,0 1 220154246 rs35193743 AT A 491.73 PASS AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.35;RPA=12,11;RU=T;SB=-2.080e+01;SOR=4.804;STR;VQSLOD=1.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:32:65:529,65,0 1 220154602 rs1694599 T C 534.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=0.00;SOR=5.421;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:563,42,0 1 220154659 . TAAA T 1735.73 PASS AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;RPA=17,14;RU=A;SB=-3.620e+02;SOR=2.833;STR;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:45:99:1671,127,0 1 220154768 rs1061160 C T 1189.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.326;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.704;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=0.163;SB=-7.920e+02;SOR=0.561;VQSLOD=9.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,52:115:99:1218,0,1528 1 220156090 rs2647462 T C 2652.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.92;SB=-1.897e+03;SOR=0.714;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:2681,190,0 1 220156427 rs1391566 T C 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.934;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=0.875;SB=-3.500e+01;SOR=0.693;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:241,0,230 1 220160360 rs2647435 A G 400.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=0.00;SOR=5.283;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:429,36,0 1 220160433 rs2647434 A G 1148.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.82;SB=-3.600e+02;SOR=2.115;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:84:1177,84,0 1 220162195 rs2254494 T C 1194.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.15;SB=-4.076e+01;SOR=5.486;VQSLOD=4.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:90:1223,90,0 1 220174732 rs1694575 C T 447.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=0.00;SOR=5.421;VQSLOD=8.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:476,39,0 1 220174740 rs4379680 C T 241.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.15;ReadPosRankSum=-2.208;SB=0.00;SOR=1.981;VQSLOD=6.98;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:3,9:12:92:270,0,92 1 220178717 . T TA 2183.73 PASS AC=2;AF=1.00;AN=2;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.66;RPA=3,4;RU=A;SB=-8.710e+02;SOR=1.179;STR;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2221,190,0 1 220179322 rs2647420 A T 804.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.39;SB=0.00;SOR=6.184;VQSLOD=8.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:833,63,0 1 220184150 rs34170326 CA C 337.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.816;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.87;RPA=17,16;RU=A;ReadPosRankSum=1.533;SB=-2.777e+01;SOR=2.833;STR;VQSLOD=5.49;culprit=FS GT:AD:DP:GQ:PL 1/1:1,16:20:41:375,41,0 1 220184164 rs28570471 A G 853.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.068;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=30.49;ReadPosRankSum=1.673;SB=-6.897e+01;SOR=2.985;VQSLOD=3.92;culprit=FS GT:AD:DP:GQ:PL 1/1:1,27:28:38:882,38,0 1 220192171 rs369833630 T TAAA 552.73 PASS AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;RPA=12,15;RU=A;SB=0.00;SOR=5.283;STR;VQSLOD=7.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:590,39,0 1 220192192 . TA T 299.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.321;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQ0=0;MQRankSum=0.612;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.78;RPA=16,15;RU=A;ReadPosRankSum=0.092;SB=-3.919e+01;SOR=2.985;STR;VQSLOD=0.059;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,17:20:3:275,3,0 1 220192495 rs2245457 C G 1358.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.593;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.97;ReadPosRankSum=1.517;SB=-2.021e+02;SOR=2.252;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:1,39:40:67:1387,67,0 1 220197545 rs2577159 C T 588.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.63;SB=-4.176e+01;SOR=4.294;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:617,48,0 1 220197625 rs2230301 G T 1814.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-8.280e+02;SOR=1.460;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1843,135,0 1 220205943 rs2789816 G A 450.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.67;SB=-3.976e+01;SOR=3.767;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:479,36,0 1 220207017 rs2647456 C T 1913.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-6.260e+02;SOR=2.056;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1942,150,0 1 220208154 rs2789817 C A 1284.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.72;SB=-7.597e+01;SOR=4.977;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1313,105,0 1 220239448 rs1146773 T C 2348.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-1.081e+03;SOR=1.522;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2377,169,0 1 220291414 . A ATC 494.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;DP=28;ExcessHet=3.0103;FS=4.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.67;RPA=1,2;RU=TC;ReadPosRankSum=1.254;SB=-4.000e+01;SOR=1.845;STR;VQSLOD=4.51;culprit=FS GT:AD:DP:GQ:PL 0/1:16,12:28:99:532,0,618 1 220362857 rs35162828 AT A 167.80 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;RPA=17,16;RU=T;ReadPosRankSum=-0.215;SB=0.00;SOR=2.670;STR;VQSLOD=5.79;culprit=FS GT:AD:DP:GQ:PL 0/1:2,10:13:18:205,0,18 1 220490812 rs4846623 G A 798.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.229;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.915;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=0.432;SB=-5.050e+02;SOR=0.526;VQSLOD=9.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,31:70:99:827,0,1048 1 220490966 rs55673394 A G 577.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.584;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=-0.732;SB=-1.010e+02;SOR=1.552;VQSLOD=6.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,20:38:99:606,0,470 1 220490975 rs7519416 G T 483.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-0.190;SB=-9.500e+01;SOR=1.027;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:17,17:34:99:512,0,471 1 220603310 rs10553491 TGTGA T 1769.50 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.719;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.123;POSITIVE_TRAIN_SITE;QD=27.36;ReadPosRankSum=0.355;SB=-3.490e+02;SOR=0.527;VQSLOD=4.83;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,33:46:3:1805,3,0 1 220607685 rs1361256 G A 1770.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-8.910e+02;SOR=1.101;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:57:99:1799,132,0 1 220607891 rs1338767 A G 1274.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=-8.230e+02;SOR=0.741;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:93:1303,93,0 1 220789362 rs12137627 T A 177.90 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=17.79;SB=-1.135e+02;SOR=1.085;VQSLOD=4.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:15:206,15,0 1 220808921 rs10746403 T C 1616.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7351;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-6.970e+02;SOR=1.287;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1645,120,0 1 220824115 rs12123306 G C 1112.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.583;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=4.168;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=0.436;SB=-4.340e+02;SOR=1.179;VQSLOD=7.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,41:89:99:1141,0,1409 1 220825523 rs3737296 A G 3667.77 PASS AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;SB=-1.488e+03;SOR=1.609;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,124:125:99:3696,271,0 1 220970028 rs2642438 A G 1335.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.948;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=1.528;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=0.540;SB=-6.450e+02;SOR=0.874;VQSLOD=7.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,51:110:99:1364,0,1423 1 220971048 rs2807835 G T 356.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.350;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=4.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=-1.416;SB=-5.800e+01;SOR=1.833;VQSLOD=6.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,12:23:99:385,0,283 1 220986516 rs12144830 C G 546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.173;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=6.145;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=0.184;SB=-5.150e-01;SOR=2.636;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 0/1:22,17:39:99:575,0,698 1 221507141 rs7555947 C T 792.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.31;SB=-2.740e+02;SOR=1.863;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:60:821,60,0 1 221509161 rs6685717 G C 238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.522;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=-0.755;SB=0.00;SOR=0.976;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:267,0,202 1 221509332 rs4382729 G A 1022.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.015;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-0.659;SB=-5.670e+02;SOR=0.776;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 0/1:40,42:82:99:1051,0,1192 1 221876126 rs2280340 A G 296.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.047;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.760;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=2.002;SB=-1.000e+02;SOR=1.236;VQSLOD=6.77;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:11,12:23:99:325,0,237 1 221912361 rs1141714 T C 1381.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.986;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=5.046;HaplotypeScore=1.9573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-1.740;SB=-3.920e+02;SOR=1.246;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 0/1:65,49:114:99:1410,0,1715 1 222650534 rs71642767 T C 117.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.36;MQ0=0;MQRankSum=-1.385;POSITIVE_TRAIN_SITE;QD=7.36;ReadPosRankSum=0.760;SB=-4.500e+01;SOR=0.883;VQSLOD=3.23;culprit=QD GT:AD:DP:GQ:PL 0/1:10,6:16:99:146,0,216 1 222705270 rs4846373 T C 615.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=3.922;HaplotypeScore=3.6110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=-0.591;SB=-3.400e+02;SOR=0.264;VQSLOD=10.06;culprit=SOR GT:AD:DP:GQ:PL 0/1:34,25:59:99:644,0,947 1 222712354 rs4846764 C T 311.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=0.317;SB=-1.330e+02;SOR=0.675;VQSLOD=10.30;culprit=FS GT:AD:DP:GQ:PL 0/1:15,12:27:99:340,0,387 1 222713208 rs35746652 G A 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.160;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=1.449;SB=0.00;SOR=0.784;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:10,11:21:99:375,0,304 1 222713503 rs3748664 C G 1676.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.400;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=4.000;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-1.596;SB=-1.023e+03;SOR=0.407;VQSLOD=7.42;culprit=DP GT:AD:DP:GQ:PL 0/1:80,64:144:99:1705,0,2147 1 222713631 rs3748666 G C 1843.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.797;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=1.731;SB=-1.153e+03;SOR=0.661;VQSLOD=8.55;culprit=FS GT:AD:DP:GQ:PL 0/1:59,66:125:99:1872,0,1624 1 222713750 rs3828079 G A 972.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.415;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.762;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=0.231;SB=-2.640e+02;SOR=1.230;VQSLOD=7.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,35:67:99:1001,0,861 1 222715247 rs11487812 A G 222.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.56;ReadPosRankSum=-1.108;SB=0.00;SOR=1.022;VQSLOD=10.28;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:251,0,151 1 222717132 rs3811466 C T 2066.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.161;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=3.640;HaplotypeScore=4.4494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=0.639;SB=-8.020e+02;SOR=0.989;VQSLOD=7.37;culprit=DP GT:AD:DP:GQ:PL 0/1:89,76:165:99:2095,0,2550 1 222721288 rs4846382 C T 3366.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.69;SB=-1.775e+03;SOR=0.973;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:3395,259,0 1 222734803 rs1134898 G C 1806.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.14;SB=-1.056e+03;SOR=1.057;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1835,132,0 1 222737265 rs35877231 G T 1455.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.54;SB=-6.770e+02;SOR=1.314;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1484,108,0 1 222742676 rs4846766 T C 1494.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.783;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.90;ReadPosRankSum=0.322;SB=-5.761e+02;SOR=1.426;VQSLOD=8.42;culprit=FS GT:AD:DP:GQ:PL 1/1:2,48:50:73:1523,73,0 1 222751034 rs2936033 T C 1613.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=-3.560e+02;SOR=2.880;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1642,117,0 1 222761649 rs4525045 C A 526.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=0.00;SOR=5.549;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:555,45,0 1 222798106 rs3008617 G A 2013.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.97;SB=-1.308e+03;SOR=0.749;VQSLOD=3.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2042,150,0 1 222802006 rs2936053 A G 1754.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.41;SB=-8.800e+02;SOR=0.994;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1783,129,0 1 222802803 rs3748626 T G 1536.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-6.990e+02;SOR=1.067;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1565,120,0 1 222802926 rs3008620 C T 1399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.33;SB=-6.350e+02;SOR=1.127;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:43:99:1428,108,0 1 222821211 rs61824282 C T 703.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.15;SB=-3.870e+02;SOR=1.136;VQSLOD=5.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:54:732,54,0 1 222823529 rs17465637 A C 456.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-8.497e+01;SOR=2.985;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:485,36,0 1 222823743 rs67180937 T G 510.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.88;SB=-1.185e+02;SOR=2.948;VQSLOD=5.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:39:539,39,0 1 222825403 rs3002150 G A 1041.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;SB=-3.770e+02;SOR=1.542;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:81:1070,81,0 1 222825717 rs10495198 T C 1418.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.82;SB=-7.320e+02;SOR=1.314;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1447,105,0 1 222825761 rs2936019 G A 998.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.22;SB=-2.331e+02;SOR=2.694;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:75:1027,75,0 1 222826481 rs2291832 G A 2039.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SB=-1.134e+03;SOR=0.725;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:2068,157,0 1 222832295 rs2291834 T C 640.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.04;SB=-1.175e+02;SOR=3.056;VQSLOD=7.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:48:669,48,0 1 222833601 rs3002153 T C 3069.77 PASS AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=-1.462e+03;SOR=1.103;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:102:99:3098,232,0 1 222837594 rs2270707 G A 635.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.46;SB=-6.997e+01;SOR=3.611;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:51:664,51,0 1 222838216 rs2936026 C T 898.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-2.341e+02;SOR=2.468;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:69:927,69,0 1 222886119 rs3811465 A G 7108.77 PASS AC=2;AF=1.00;AN=2;DB;DP=244;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.13;SB=-3.950e+03;SOR=1.212;VQSLOD=4.99;culprit=DP GT:AD:DP:GQ:PL 1/1:0,244:244:99:7137,509,0 1 222919895 rs2378607 T G 561.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-2.411e+02;SOR=1.609;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:42:590,42,0 1 222923001 rs2068814 A G 1989.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-1.050e+03;SOR=0.787;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2018,153,0 1 222923351 rs6683071 A G 776.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.75;SB=-1.393e+02;SOR=2.737;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:805,60,0 1 223116240 rs61746477 G A 1466.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=1.486;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-1.404;SB=-9.450e+02;SOR=0.540;VQSLOD=8.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,57:115:99:1495,0,1507 1 223152868 rs1815607 G A 868.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.75;SB=-4.076e+01;SOR=5.058;VQSLOD=7.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:72:897,72,0 1 223156382 rs2926159 C T 718.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2264;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.67;SB=-4.000e+02;SOR=1.382;VQSLOD=4.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:54:747,54,0 1 223164547 rs2789957 A T 369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;SB=0.00;SOR=4.977;VQSLOD=7.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:398,33,0 1 223168213 rs2609359 T C 1694.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-8.350e+02;SOR=1.371;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1723,123,0 1 223177574 rs2609355 A G 3725.77 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.50;SB=-1.741e+03;SOR=1.127;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,108:108:99:3754,277,0 1 223283910 rs7512943 A G 2609.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.66;SB=-1.351e+03;SOR=1.312;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2638,187,0 1 223284528 rs5744174 A G 753.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.303;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.175;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-1.089;SB=-3.590e+02;SOR=1.179;VQSLOD=7.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,28:62:99:782,0,872 1 223284599 rs2072493 T C 774.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.007;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=9.734;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-0.347;SB=-4.300e+02;SOR=0.643;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 0/1:25,30:55:99:803,0,674 1 223441950 rs61737414 T G 1504.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.733;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=1.455;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-0.646;SB=-7.110e+02;SOR=0.520;VQSLOD=7.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:80,57:137:99:1533,0,2125 1 223711443 rs376165890 C T 2998.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;DB;DP=199;Dels=0.00;ExcessHet=3.0103;FS=1.107;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.07;ReadPosRankSum=1.453;SB=-1.695e+03;SOR=0.815;VQSLOD=5.73;culprit=DP GT:AD:DP:GQ:PL 0/1:88,111:199:99:3027,0,2120 1 223715248 rs36108579 GT G 1371.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;DB;DP=69;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.47;RPA=2,1;RU=T;ReadPosRankSum=-0.497;SB=-5.540e+02;SOR=0.570;STR;VQSLOD=8.26;culprit=QD GT:AD:DP:GQ:PL 0/1:31,36:69:99:1409,0,1198 1 223716349 rs4072246 G A 810.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.769;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=0.910;SB=-2.630e+02;SOR=0.621;VQSLOD=8.89;culprit=FS GT:AD:DP:GQ:PL 0/1:29,31:60:99:839,0,813 1 223717379 rs61823524 A C 1307.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.43;SB=-5.990e+02;SOR=1.609;VQSLOD=5.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:96:1336,96,0 1 223717484 rs34158997 G A 810.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=5.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-0.457;SB=-4.520e+02;SOR=0.634;VQSLOD=5.35;culprit=FS GT:AD:DP:GQ:PL 0/1:33,31:64:99:839,0,882 1 223718462 rs61823525 G A 344.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=-0.251;SB=-9.600e+01;SOR=1.038;VQSLOD=8.99;culprit=FS GT:AD:DP:GQ:PL 0/1:6,11:17:99:373,0,177 1 223718518 rs61823552 C A 451.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.842;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.554;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.163;SB=-1.660e+02;SOR=0.416;VQSLOD=9.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,18:33:99:480,0,455 1 223718651 rs61823553 G A 536.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.690;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=0.614;SB=-1.400e+02;SOR=1.270;VQSLOD=7.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,20:50:99:565,0,732 1 223718670 rs61823554 G A 431.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.707;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.838;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.39;ReadPosRankSum=0.251;SB=-1.120e+02;SOR=1.215;VQSLOD=6.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,17:46:99:460,0,734 1 223722658 rs79127446 A T 283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.92;ReadPosRankSum=0.797;SB=-3.377e+01;SOR=0.527;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:5,10:15:99:312,0,148 1 223722780 rs34606532 G A 417.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.472;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.88;ReadPosRankSum=0.921;SB=-1.590e+02;SOR=0.558;VQSLOD=8.97;culprit=QD GT:AD:DP:GQ:PL 0/1:35,18:53:99:446,0,948 1 223740046 . C T 383.77 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=31.98;SB=-7.097e+01;SOR=2.670;VQSLOD=5.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:412,30,0 1 223799857 rs34786756 C T 2388.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.790;DB;DP=177;Dels=0.00;ExcessHet=3.0103;FS=1.172;HaplotypeScore=8.6384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-0.184;SB=-1.526e+03;SOR=0.668;VQSLOD=7.58;culprit=DP GT:AD:DP:GQ:PL 0/1:81,96:177:99:2417,0,2230 1 223807522 rs75988987 C A 95.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.98;ReadPosRankSum=0.657;SB=0.00;SOR=0.269;VQSLOD=8.69;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:99:124,0,256 1 223813586 rs35539373 G T 470.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.009;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.457;HaplotypeScore=2.8903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=0.081;SB=-2.740e+02;SOR=0.378;VQSLOD=9.21;culprit=QD GT:AD:DP:GQ:PL 0/1:34,20:54:99:499,0,934 1 223814658 rs79128521 G T 773.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.893;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.556;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=0.066;SB=-2.370e+02;SOR=0.446;VQSLOD=9.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,30:43:99:802,0,340 1 223814671 rs61825208 A T 808.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.912;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=3.359;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=0.628;SB=-3.220e+02;SOR=0.235;VQSLOD=9.55;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,32:47:99:837,0,386 1 223814964 rs79555212 A G 138.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.352;SB=-3.876e+01;SOR=0.223;VQSLOD=8.72;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:167,0,157 1 223815575 rs34187970 G A 298.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.091;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=0.319;SB=-1.190e+02;SOR=0.653;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:21,12:33:99:327,0,572 1 223816322 rs66602040 A G 755.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.096;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.894;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=0.077;SB=-5.060e+02;SOR=0.639;VQSLOD=7.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,31:74:99:784,0,1254 1 223816347 rs61825210 A G 783.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.988;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.33;ReadPosRankSum=0.037;SB=-4.480e+02;SOR=0.713;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 0/1:51,33:84:99:812,0,1478 1 223816577 rs61825211 T C 116.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=0.424;SB=0.00;SOR=0.368;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:8,5:13:99:145,0,277 1 223830617 rs181941655 C A 796.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.117;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.295;HaplotypeScore=2.6297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=0.044;SB=-3.410e+02;SOR=0.425;VQSLOD=9.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,33:67:99:825,0,1073 1 223900408 rs25655 C G 2096.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-7.780e+02;SOR=1.875;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2125,154,0 1 223931648 rs1222137 T C 1087.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-3.270e+02;SOR=1.911;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:84:1116,84,0 1 223934720 rs17600 G A 5098.77 PASS AC=2;AF=1.00;AN=2;DB;DP=169;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.17;SB=-3.189e+03;SOR=0.753;VQSLOD=5.71;culprit=DP GT:AD:DP:GQ:PL 1/1:0,169:169:99:5127,382,0 1 223949158 rs6687003 G A 264.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6823;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.07;SB=0.00;SOR=4.977;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:12:24:293,24,0 1 223951985 rs737066 C A 4176.77 PASS AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;SB=-1.741e+03;SOR=1.627;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,137:137:99:4205,319,0 1 223959796 rs1153950 G A 2949.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.06;SB=-1.484e+03;SOR=0.982;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,92:92:99:2978,223,0 1 223959959 rs1153949 G A 1791.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-6.640e+02;SOR=1.981;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1820,138,0 1 223968753 rs374716603 G A 435.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.844;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.506;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.62;ReadPosRankSum=-1.045;SB=-2.480e+02;SOR=0.223;VQSLOD=8.67;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,18:32:99:464,0,375 1 223980207 rs1153936 G C 3723.77 PASS AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.09;SB=-2.395e+03;SOR=0.859;VQSLOD=4.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,128:128:99:3752,265,0 1 223984306 . G GA 492.19 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQ0=0;MQRankSum=0.492;POSITIVE_TRAIN_SITE;QD=19.69;RPA=10,11;RU=A;ReadPosRankSum=0.293;SB=-6.097e+01;SOR=1.402;STR;VQSLOD=3.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,22:28:4:528,0,4 1 223989966 rs1153933 C T 5305.77 PASS AC=2;AF=1.00;AN=2;DB;DP=172;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-2.952e+03;SOR=0.867;VQSLOD=6.51;culprit=DP GT:AD:DP:GQ:PL 1/1:0,172:172:99:5334,394,0 1 224008913 rs3738370 G A 1151.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-3.120e+02;SOR=2.368;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:87:1180,87,0 1 224009157 . C T 531.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.227;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.03;ReadPosRankSum=0.098;SB=-2.860e+02;SOR=0.704;VQSLOD=8.04;culprit=FS GT:AD:DP:GQ:PL 0/1:29,24:53:99:560,0,793 1 224051926 rs7519753 T C 292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.719;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=0.627;SB=-1.360e+02;SOR=1.445;VQSLOD=6.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,12:22:99:321,0,297 1 224052192 rs6696120 G C 1461.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.83;SB=-8.430e+02;SOR=1.007;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1490,105,0 1 224052248 rs6696222 G A 419.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.013;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-1.542;SB=-1.590e+02;SOR=0.784;VQSLOD=10.06;culprit=FS GT:AD:DP:GQ:PL 0/1:15,16:31:99:448,0,470 1 224133240 rs147548627 G A 458.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=1;POSITIVE_TRAIN_SITE;QD=26.99;SB=-1.533e+02;SOR=2.049;VQSLOD=4.36;culprit=FS GT:AD:DP:GQ:PL 1/1:1,16:17:36:487,36,0 1 224139650 rs61825422 T C 310.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=2;POSITIVE_TRAIN_SITE;QD=23.91;SB=-1.991e+02;SOR=0.859;VQSLOD=4.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:24:339,24,0 1 224302154 rs377186292 T TGAG 2889.73 PASS AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.61;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.28;RPA=1,2;RU=GAG;SB=-7.960e+02;SOR=2.078;STR;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:53:99:2927,148,0 1 224302230 rs2280291 C G 869.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.21;SB=-8.297e+01;SOR=4.091;VQSLOD=4.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:898,66,0 1 224318151 rs33933441 T TTTG 2557.73 PASS AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.93;RPA=1,2;RU=TTG;SB=-4.320e+02;SOR=3.080;STR;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:2595,144,0 1 224321984 rs1472167 C T 1660.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.63;SB=-7.090e+02;SOR=1.733;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1689,123,0 1 224345012 rs7543762 G A 818.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SB=-7.597e+01;SOR=4.174;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:66:847,66,0 1 224415616 rs3767731 C T 895.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-6.997e+01;SOR=4.174;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:72:924,72,0 1 224444628 rs10799556 C T 1659.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.66;SB=-1.114e+03;SOR=0.831;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1688,120,0 1 224468986 rs71922544 C CGT 264.74 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.47;RPA=14,15;RU=GT;ReadPosRankSum=0.493;SB=0.00;SOR=2.303;STR;VQSLOD=7.76;culprit=FS GT:AD:DP:GQ:PL 0/1:2,8:17:29:302,0,29 1 224482216 rs2404783 T C 430.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.14;SB=0.00;SOR=5.283;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:459,39,0 1 224491264 rs4654018 T A 449.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.60;SB=0.00;SOR=5.283;VQSLOD=8.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:478,39,0 1 224492381 rs7522125 C T 1250.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-1.951e+02;SOR=3.500;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:96:1279,96,0 1 224492746 rs3754090 C T 1198.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.24;SB=-4.520e+02;SOR=1.666;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:93:1227,93,0 1 224495852 rs7534447 C T 3761.77 PASS AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=-2.235e+03;SOR=0.760;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,122:122:99:3790,280,0 1 224505570 . T TAA 747.73 PASS AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.24;RPA=2,4;RU=A;SB=-2.371e+02;SOR=1.739;STR;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:785,51,0 1 224514275 rs4653578 G A 394.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;SB=0.00;SOR=4.977;VQSLOD=7.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:423,33,0 1 224517842 rs2896990 C T 2544.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.81;SB=-1.117e+03;SOR=1.387;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2573,193,0 1 224517907 rs4146965 A T 1436.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.17;SB=-5.200e+02;SOR=1.702;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1465,111,0 1 224544529 rs7517754 A G 639.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.32;SB=0.00;SOR=5.892;VQSLOD=8.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:668,51,0 1 224600910 rs10916612 C A 278.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7678;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.34;SB=-1.513e+02;SOR=0.859;VQSLOD=4.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:12:24:307,24,0 1 224600920 rs10916613 C A 335.78 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.737;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7460;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.98;ReadPosRankSum=1.242;SB=-1.941e+02;SOR=0.283;VQSLOD=7.51;culprit=FS GT:AD:DP:GQ:PL 1/1:1,13:14:27:364,27,0 1 224621368 rs2405033 G C 860.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.27;SB=-2.351e+02;SOR=2.124;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:889,66,0 1 224762167 rs6426141 C T 73.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.15;ReadPosRankSum=-0.628;SB=-6.700e+01;SOR=0.368;VQSLOD=9.14;culprit=QD GT:AD:DP:GQ:PL 0/1:7,5:12:99:102,0,218 1 224868596 rs7525096 A C 825.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=2.827;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.69;ReadPosRankSum=0.817;SB=-3.410e+02;SOR=1.048;VQSLOD=7.09;culprit=QD GT:AD:DP:GQ:PL 0/1:59,36:95:99:854,0,1563 1 224872443 rs3738364 A G 1632.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.225;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=1.234;SB=-8.590e+02;SOR=0.652;VQSLOD=7.65;culprit=DP GT:AD:DP:GQ:PL 0/1:91,66:157:99:1661,0,2173 1 224872473 rs3738363 A G 1911.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;DB;DP=176;Dels=0.00;ExcessHet=3.0103;FS=1.899;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.372;SB=-1.084e+03;SOR=0.892;VQSLOD=7.24;culprit=DP GT:AD:DP:GQ:PL 0/1:98,78:176:99:1940,0,2429 1 224926997 . CTTT C 280.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.90;MQ0=0;MQRankSum=1.659;POSITIVE_TRAIN_SITE;QD=9.68;RPA=25,22;RU=T;ReadPosRankSum=-0.878;SB=-1.200e+02;SOR=0.465;STR;VQSLOD=1.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,13:36:99:318,0,441 1 225084219 rs12563323 C T 1118.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.47;SB=0.00;SOR=6.932;VQSLOD=8.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:93:1147,93,0 1 225111228 rs16858299 T A 1464.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.42;SB=-1.741e+02;SOR=3.664;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1493,111,0 1 225117561 rs2501078 T C 379.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-8.297e+01;SOR=2.670;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:408,30,0 1 225155110 rs145350269 TA T 1069.73 PASS AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=28.15;SB=-1.353e+02;SOR=3.912;VQSLOD=3.32;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,38:38:99:1107,113,0 1 225155114 rs2501155 A T 1379.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=37.3847;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;SB=-1.901e+02;SOR=3.500;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1408,105,0 1 225156655 rs10495229 C T 1926.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;SB=-7.030e+02;SOR=1.850;VQSLOD=7.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1955,144,0 1 225156712 rs16858932 C T 1074.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.59;SB=-1.901e+02;SOR=3.126;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:84:1103,84,0 1 225211263 rs12563857 C A 333.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.34;SB=-7.497e+01;SOR=2.494;VQSLOD=8.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:362,27,0 1 225288534 rs3105571 A C 1724.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-9.410e+02;SOR=1.101;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1753,126,0 1 225305572 rs16843988 C G 2746.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=-1.350e+03;SOR=1.206;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2775,202,0 1 225311427 rs75447949 AT A 1084.73 PASS AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.22;MQ0=0;NEGATIVE_TRAIN_SITE;QD=26.46;RPA=8,7;RU=T;SB=-3.277e+01;SOR=6.043;STR;VQSLOD=0.596;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:44:99:1122,123,0 1 225328432 rs192476647 G T 385.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=0.00;SOR=5.136;VQSLOD=8.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:414,33,0 1 225334800 rs1480104 T A 1175.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.494;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8993;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.99;ReadPosRankSum=-1.362;SB=-3.070e+02;SOR=1.519;VQSLOD=8.56;culprit=FS GT:AD:DP:GQ:PL 1/1:1,41:42:62:1204,62,0 1 225335028 . A AT 972.73 PASS AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.95;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;RPA=4,5;RU=T;SB=-1.661e+02;SOR=3.056;STR;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:34:93:1010,93,0 1 225341687 rs16844377 A G 952.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.76;SB=-1.593e+02;SOR=3.098;VQSLOD=5.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:72:981,72,0 1 225439988 rs630120 T C 2568.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.53;SB=-1.194e+03;SOR=1.504;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2597,187,0 1 225445652 rs670255 G T 990.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-3.130e+02;SOR=2.235;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:75:1019,75,0 1 225460626 rs656649 T A 1004.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.40;SB=-1.931e+02;SOR=3.126;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:81:1033,81,0 1 225477491 rs12024361 C T 624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.02;SB=0.00;SOR=5.784;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:653,51,0 1 225477546 rs12042076 A C 1305.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=-2.740e+02;SOR=2.531;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1334,99,0 1 225477793 rs12042900 T G 869.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.21;SB=-1.751e+02;SOR=2.753;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:66:898,66,0 1 225492545 rs1995482 A G 501.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.52;SB=-1.175e+02;SOR=2.712;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:530,42,0 1 225492845 rs12034925 C T 782.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.62;SB=-1.841e+02;SOR=2.494;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:811,60,0 1 225506294 rs10495237 A G 3102.77 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.73;SB=-1.671e+03;SOR=1.232;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,108:108:99:3131,235,0 1 225510564 rs67676118 C T 1480.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.19;SB=-3.070e+02;SOR=2.985;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1509,120,0 1 225519481 rs72750816 A T 404.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.33;SB=0.00;SOR=4.977;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:433,33,0 1 225525698 . C CT 654.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.772;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.25;RPA=10,11;RU=T;ReadPosRankSum=1.091;SB=-5.897e+01;SOR=2.910;STR;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 1/1:1,26:27:55:692,55,0 1 225533731 rs12742757 T A 1498.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.75;SB=-7.410e+02;SOR=1.445;VQSLOD=5.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1527,114,0 1 225541649 rs3915578 A G 1380.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.97;SB=-6.520e+02;SOR=1.096;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1409,102,0 1 225541899 rs3915579 C T 3149.77 PASS AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-1.962e+03;SOR=0.693;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:102:99:3178,232,0 1 225545580 rs12745950 A C 4264.77 PASS AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.56;SB=-1.138e+03;SOR=2.548;VQSLOD=4.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,131:131:99:4293,307,0 1 225546172 rs9659299 C G 359.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.67;SB=0.00;SOR=5.283;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:388,33,0 1 225552624 rs10495239 G A 572.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.15;SB=-2.251e+02;SOR=1.609;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:45:601,45,0 1 225552650 rs12563830 C T 519.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.57;SB=-1.891e+02;SOR=1.739;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:548,42,0 1 225562385 rs10915816 C T 3316.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.29;SB=-1.330e+03;SOR=1.544;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3345,244,0 1 225565015 rs3856154 T C 1172.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.92;SB=-7.590e+02;SOR=0.892;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:84:1201,84,0 1 225565073 rs3856155 C T 962.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.51;SB=-4.490e+02;SOR=1.308;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:72:991,72,0 1 225569241 rs950210 T G 1839.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.811;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.66;ReadPosRankSum=1.444;SB=-9.780e+02;SOR=0.418;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:1,59:60:99:1868,135,0 1 225576058 rs6679430 T C 1766.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.96;SB=-6.840e+02;SOR=1.609;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1795,129,0 1 225576311 rs10753405 A G 613.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.80;SB=-3.377e+01;SOR=4.294;VQSLOD=7.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:642,48,0 1 225577648 rs12134158 C T 1413.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SB=-3.180e+02;SOR=2.885;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1442,108,0 1 225597846 rs1011319 A G 328.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=0.00;SOR=4.804;VQSLOD=7.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:357,30,0 1 225601647 rs3766928 C T 2014.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5335;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-1.125e+03;SOR=0.949;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2043,150,0 1 225607144 rs2230419 C T 715.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.08;SB=-1.483e+02;SOR=2.636;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:57:744,57,0 1 225609884 rs1056608 A G 2632.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-1.391e+03;SOR=0.947;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2661,199,0 1 225611661 rs1056607 C T 1948.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=-8.390e+02;SOR=1.437;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:1977,144,0 1 225611845 rs1340867 C T 1161.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.17;SB=-2.301e+02;SOR=2.899;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:90:1190,90,0 1 225685621 rs145776060 TAAG T 1883.73 PASS AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.53;RPA=2,1;RU=AAG;SB=-3.321e+02;SOR=2.899;STR;VQSLOD=5.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:39:99:1921,102,0 1 225700530 rs200317333 T C 664.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.057;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=-0.542;SB=-3.460e+02;SOR=0.648;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:38,24:62:99:693,0,1031 1 225974531 rs4653433 A G 608.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.67;SB=-3.590e+02;SOR=1.085;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:45:637,45,0 1 225990958 . G C 1369.77 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.205e+02;SOR=4.294;VQSLOD=1.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:99:1398,102,0 1 225990959 rs10158302 T C 1330.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.57;SB=-1.115e+02;SOR=4.294;VQSLOD=4.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:99:1359,102,0 1 225991093 . A G 2476.77 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.80;SB=-1.278e+03;SOR=1.127;VQSLOD=5.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2505,181,0 1 225991165 rs11588766 G A 1208.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.11;SB=-5.180e+02;SOR=1.775;VQSLOD=5.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:93:1237,93,0 1 225991176 rs4653685 T G 1062.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-4.030e+02;SOR=1.885;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:78:1091,78,0 1 226019527 rs55798709 G A 868.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-2.271e+02;SOR=2.387;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:66:897,66,0 1 226019653 rs1131873 G A 2014.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.38;SB=-1.316e+03;SOR=0.840;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2043,147,0 1 226019774 rs2260863 G C 838.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-1.195e+02;SOR=3.528;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:63:867,63,0 1 226027659 rs2292568 C T 5316.77 PASS AC=2;AF=1.00;AN=2;DB;DP=179;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-2.903e+03;SOR=0.953;VQSLOD=6.07;culprit=DP GT:AD:DP:GQ:PL 1/1:0,179:179:99:5345,388,0 1 226032018 rs56301120 G A 2837.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.11;SB=-7.697e+01;SOR=6.439;VQSLOD=3.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2866,220,0 1 226033030 rs4149230 G C 734.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-4.176e+01;SOR=4.712;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:763,63,0 1 226034774 rs2292559 C T 2408.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-9.150e+02;SOR=1.771;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2437,181,0 1 226036309 rs360063 A G 1295.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-5.460e+02;SOR=1.402;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:96:1324,96,0 1 226041438 rs2292556 C T 2343.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-1.214e+03;SOR=1.091;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2372,172,0 1 226043474 rs3738051 A G 378.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-7.497e+01;SOR=2.670;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:407,33,0 1 226043855 rs3766936 A G 2187.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.65;SB=-5.700e+02;SOR=2.483;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2216,160,0 1 226044220 rs76717460 C T 2650.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-1.099e+03;SOR=1.609;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2679,196,0 1 226044489 . G GC 1073.73 PASS AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.43;RPA=4,5;RU=C;SB=-3.860e+02;SOR=1.460;STR;VQSLOD=5.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:32:87:1111,87,0 1 226044500 rs3215220 GC G 1170.73 PASS AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.39;RPA=4,3;RU=C;SB=-5.250e+02;SOR=0.976;STR;VQSLOD=4.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:31:90:1208,90,0 1 226044591 rs2292560 C T 1345.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.64;SB=-5.520e+02;SOR=1.445;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1374,102,0 1 226046648 . ATGTGTGTG ATG,A 1316.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.44;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.19;RPA=24,21,20;RU=TG;SB=-1.358e+02;SOR=3.383;STR;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/2:0,11,6:19:99:1354,208,157,455,0,456 1 226046974 rs2292561 T C 6713.77 PASS AC=2;AF=1.00;AN=2;DB;DP=223;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.11;SB=-3.618e+03;SOR=1.103;VQSLOD=5.19;culprit=DP GT:AD:DP:GQ:PL 1/1:0,223:223:99:6742,482,0 1 226048746 . A C 4518.77 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-2.369e+03;SOR=1.285;VQSLOD=6.05;culprit=DP GT:AD:DP:GQ:PL 1/1:0,155:155:99:4547,343,0 1 226049909 rs74150536 T C 1576.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.28;SB=-3.610e+02;SOR=2.737;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1605,120,0 1 226050678 rs74229306 G A 1879.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-5.870e+02;SOR=2.041;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1908,138,0 1 226054681 rs360085 T A 770.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=-3.377e+01;SOR=4.712;VQSLOD=7.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:799,60,0 1 226058534 rs360090 C G 517.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.62;SB=0.00;SOR=5.421;VQSLOD=8.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:546,42,0 1 226061956 rs2271544 G A 771.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.56;SB=-1.095e+02;SOR=3.352;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:800,60,0 1 226074373 rs3766941 C A 1048.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.759;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.771;HaplotypeScore=2.6640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.12;ReadPosRankSum=-2.122;SB=-4.060e+02;SOR=0.823;VQSLOD=6.92;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:72,43:115:99:1077,0,1979 1 226074753 rs139440539 C T 520.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=59.91;MQ0=0;MQRankSum=1.226;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=-0.200;SB=-1.020e+02;SOR=1.101;VQSLOD=3.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,19:33:99:549,0,396 1 226074985 rs2236143 T C 502.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.559;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.353;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-0.347;SB=-1.360e+02;SOR=1.398;VQSLOD=7.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,19:34:99:531,0,400 1 226075410 rs57114136 GC G 515.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;DB;DP=55;ExcessHet=3.0103;FS=7.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;RPA=7,6;RU=C;ReadPosRankSum=-1.644;SB=-3.700e+01;SOR=2.237;STR;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 0/1:21,20:55:99:553,0,611 1 226075473 rs77296604 C G 394.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.468;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.16;ReadPosRankSum=0.217;SB=-6.200e+01;SOR=1.022;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:10,13:23:99:423,0,296 1 226076669 rs41310561 C T 224.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.583;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.32;ReadPosRankSum=0.309;SB=-1.150e+02;SOR=0.746;VQSLOD=5.23;culprit=QD GT:AD:DP:GQ:PL 0/1:18,9:27:99:253,0,468 1 226108894 rs10915897 C T 875.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.357;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.528;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=0.442;SB=-4.770e+02;SOR=0.351;VQSLOD=10.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,40:72:99:904,0,895 1 226110243 rs10915898 G A 319.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.867;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.27;ReadPosRankSum=-0.758;SB=-1.880e+02;SOR=0.741;VQSLOD=9.25;culprit=QD GT:AD:DP:GQ:PL 0/1:28,16:44:99:348,0,781 1 226111551 rs78056710 C T 795.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.690;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=0.465;SB=-3.160e+02;SOR=0.760;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:21,28:49:99:824,0,509 1 226111718 . G GCCGCCTC 1186.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.75;RPA=2,3;RU=CCGCCTC;ReadPosRankSum=-0.298;SB=-5.230e+02;SOR=0.703;STR;VQSLOD=8.54;culprit=FS GT:AD:DP:GQ:PL 0/1:23,14:41:99:1224,0,1960 1 226125543 . G GA 544.73 PASS AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.04;RPA=1,2;RU=A;SB=-4.876e+01;SOR=3.767;STR;VQSLOD=7.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:582,39,0 1 226127443 rs74578461 G C 653.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.35;MQ0=0;MQRankSum=-0.459;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-0.057;SB=-2.520e+02;SOR=0.824;VQSLOD=2.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,23:57:99:682,0,1025 1 226173217 rs76285584 T C 1427.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-2.750e+02;SOR=3.056;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1456,108,0 1 226179909 rs1885254 A G 420.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.84;SB=0.00;SOR=4.977;VQSLOD=8.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:449,33,0 1 226179990 rs117031416 T C 1140.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;SB=-2.840e+02;SOR=2.368;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:87:1169,87,0 1 226180816 . C CT 349.70 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.713;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.90;RPA=15,16;RU=T;ReadPosRankSum=1.774;SB=-5.797e+01;SOR=1.179;STR;VQSLOD=8.03;culprit=FS GT:AD:DP:GQ:PL 0/1:3,19:31:6:386,0,6 1 226252232 rs2036870 C T 380.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-1.065e+02;SOR=1.981;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:409,33,0 1 226253127 rs1511056 T G 702.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=0.00;SOR=5.994;VQSLOD=8.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:731,54,0 1 226253316 rs1849032 G T 1643.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=-6.030e+02;SOR=1.702;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:52:99:1672,126,0 1 226314967 rs75261268 G A 238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.429;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.804;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-0.776;SB=-6.200e+01;SOR=1.179;VQSLOD=7.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,10:23:99:267,0,327 1 226334578 rs1219666 G A 922.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.82;SB=-2.351e+02;SOR=2.546;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:69:951,69,0 1 226349111 rs61835253 C T 329.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.039;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.55;ReadPosRankSum=1.345;SB=0.00;SOR=1.765;VQSLOD=8.28;culprit=FS GT:AD:DP:GQ:PL 0/1:4,10:14:99:358,0,117 1 226352498 rs2306120 T G 1498.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.764;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=4.257;HaplotypeScore=5.2613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=0.891;SB=-5.910e+02;SOR=1.220;VQSLOD=6.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,52:89:99:1527,0,874 1 226353521 rs2306121 T A 395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.92;ReadPosRankSum=-1.526;SB=-2.260e+02;SOR=0.610;VQSLOD=9.25;culprit=QD GT:AD:DP:GQ:PL 0/1:30,20:50:99:424,0,817 1 226411317 rs10915962 C T 306.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.205;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=1.189;SB=-1.790e+02;SOR=1.179;VQSLOD=9.11;culprit=FS GT:AD:DP:GQ:PL 0/1:2,13:15:48:335,0,48 1 226413363 rs3738796 C T 1908.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.694;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=4.657;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=-0.927;SB=-1.041e+03;SOR=0.433;VQSLOD=6.86;culprit=DP GT:AD:DP:GQ:PL 0/1:89,76:165:99:1937,0,2524 1 226465432 . T C 877.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.265;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.56;ReadPosRankSum=0.840;SB=-1.760e+02;SOR=0.941;VQSLOD=7.78;culprit=FS GT:AD:DP:GQ:PL 0/1:24,29:53:99:906,0,625 1 226465693 . C CT 133.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.87;RPA=10,11;RU=T;ReadPosRankSum=0.283;SB=0.00;SOR=0.593;STR;VQSLOD=8.11;culprit=QD GT:AD:DP:GQ:PL 0/1:9,8:22:99:171,0,180 1 226474132 rs10799347 G A 1200.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-5.450e+02;SOR=1.445;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:90:1229,90,0 1 226485327 . A AT 219.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.09;RPA=6,7;RU=T;ReadPosRankSum=0.062;SB=-7.100e+01;SOR=0.538;STR;VQSLOD=9.31;culprit=QD GT:AD:DP:GQ:PL 0/1:20,11:32:99:257,0,479 1 226497630 rs77563042 A C 792.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.703;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.793;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-1.644;SB=-2.540e+02;SOR=0.377;VQSLOD=9.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,32:59:99:821,0,797 1 226550553 rs3046776 AT A 91.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.59;RPA=16,15;RU=T;ReadPosRankSum=1.701;SB=-1.810e+01;SOR=0.693;STR;VQSLOD=8.65;culprit=QD GT:AD:DP:GQ:PL 0/1:10,10:20:99:129,0,179 1 226550741 rs747659 C T 708.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.891;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=8.152;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=-1.041;SB=-2.200e+02;SOR=1.619;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 0/1:45,29:74:99:737,0,1254 1 226552631 rs375896690 T C 60.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.08;ReadPosRankSum=-0.984;SB=0.00;SOR=0.223;VQSLOD=8.04;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:89:89,0,247 1 226553490 rs34917861 C A 169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.879;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.4976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.08;ReadPosRankSum=2.573;SB=-3.100e+01;SOR=0.693;VQSLOD=7.27;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:13,8:21:99:198,0,387 1 226553494 . C CA 184.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;DP=22;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.40;RPA=10,11;RU=A;ReadPosRankSum=1.847;SB=-4.907e+01;SOR=0.223;STR;VQSLOD=8.93;culprit=QD GT:AD:DP:GQ:PL 0/1:12,10:22:99:222,0,207 1 226553934 rs2271349 A C 289.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.29;ReadPosRankSum=0.295;SB=0.00;SOR=1.609;VQSLOD=9.08;culprit=FS GT:AD:DP:GQ:PL 0/1:4,9:13:99:318,0,110 1 226555302 rs1136410 A G 1305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=2.578;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-0.834;SB=-6.830e+02;SOR=0.884;VQSLOD=7.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,52:102:99:1334,0,1318 1 226556094 rs1805400 T C 1775.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-8.170e+02;SOR=1.493;VQSLOD=7.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1804,129,0 1 226558271 rs73089862 G A 1024.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.095;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=1.820;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-1.143;SB=-4.220e+02;SOR=0.935;VQSLOD=7.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,42:89:99:1053,0,1219 1 226566726 rs907190 A C 230.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.238;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.41;ReadPosRankSum=-1.556;SB=-2.501e+01;SOR=0.527;VQSLOD=8.86;culprit=QD GT:AD:DP:GQ:PL 0/1:26,10:36:99:259,0,800 1 226570840 rs1805415 T C 1102.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.078;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.97;ReadPosRankSum=-1.011;SB=-6.630e+02;SOR=0.603;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:26,39:65:99:1131,0,606 1 226573364 rs1805414 A G 2908.77 PASS AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.52;SB=-1.840e+03;SOR=0.815;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:102:99:2937,220,0 1 226573402 rs1805408 T C 1060.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=2.772;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=0.166;SB=-6.360e+02;SOR=0.416;VQSLOD=9.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,42:93:99:1089,0,1229 1 226576270 rs2255403 A G 184.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.297;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.80;ReadPosRankSum=1.450;SB=-7.000e+01;SOR=0.941;VQSLOD=10.00;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:95:213,0,95 1 226576296 rs2293464 G A 62.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.83;ReadPosRankSum=1.206;SB=-5.500e+01;SOR=0.283;VQSLOD=9.50;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:91:91,0,303 1 226578099 rs1805403 T C 615.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.08;SB=0.00;SOR=5.670;VQSLOD=8.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:644,48,0 1 226580021 rs1805405 G T 967.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.809;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=0.762;SB=-5.320e+02;SOR=0.660;VQSLOD=8.99;culprit=FS GT:AD:DP:GQ:PL 0/1:34,38:72:99:996,0,916 1 226580093 rs2280712 C T 677.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=5.411;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=0.402;SB=-2.840e+02;SOR=1.303;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 0/1:32,25:57:99:706,0,897 1 226580187 rs1002153 T C 376.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.218;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.19;ReadPosRankSum=1.856;SB=-1.550e+02;SOR=0.869;VQSLOD=8.22;culprit=FS GT:AD:DP:GQ:PL 0/1:27,14:41:99:405,0,674 1 226580387 rs1000033 T G 96.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=-0.405;SB=-3.000e+01;SOR=0.892;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:125,0,206 1 226589709 rs2666428 C T 1589.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.57;SB=-5.320e+02;SOR=1.893;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1618,120,0 1 226589833 rs1805407 T C 1570.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.337;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=3.044;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=0.078;SB=-8.530e+02;SOR=0.883;VQSLOD=6.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,55:85:99:1599,0,799 1 226589958 rs1805404 G A 1295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.676;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.00;ReadPosRankSum=0.274;SB=-7.940e+02;SOR=0.536;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:33,48:81:99:1324,0,874 1 226595377 rs892348 C G 245.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.267;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=2.989;SB=0.00;SOR=0.818;VQSLOD=8.41;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,8:15:99:274,0,239 1 226595389 rs4653734 C G 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=-2.989;SB=0.00;SOR=0.582;VQSLOD=8.67;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:8,7:15:99:201,0,273 1 226595403 . A AGGGCCC 638.75 PASS AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.62;RPA=2,3;RU=GGGCCC;SB=0.00;SOR=4.407;STR;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,8:16:24:676,24,0 1 226595647 rs907187 C G 1877.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-0.020;SB=-1.270e+03;SOR=0.743;VQSLOD=8.59;culprit=FS GT:AD:DP:GQ:PL 0/1:67,75:142:99:1906,0,1657 1 226725814 rs2282427 G A 951.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=1.564;HaplotypeScore=8.6566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.61;ReadPosRankSum=0.260;SB=-4.530e+02;SOR=0.960;VQSLOD=6.11;culprit=QD GT:AD:DP:GQ:PL 0/1:84,41:126:99:980,0,2066 1 226825341 rs2236604 G A 1574.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.672;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=8.843;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=0.156;SB=-9.950e+02;SOR=0.264;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 0/1:53,64:117:99:1603,0,1372 1 226835214 rs1144835 A G 58.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.459;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.52;ReadPosRankSum=-0.423;SB=-9.732e-01;SOR=1.609;VQSLOD=7.86;culprit=QD GT:AD:DP:GQ:PL 0/1:10,3:13:87:87,0,249 1 226836590 rs2298169 A G 451.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.279;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=1.513;SB=-2.740e+02;SOR=0.495;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:14,19:33:99:480,0,348 1 226923505 rs708776 G T 3832.77 PASS AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.94;SB=-2.514e+03;SOR=0.724;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,128:128:99:3861,280,0 1 226923938 rs6667260 A C 1608.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.083;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=1.408;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-0.024;SB=-1.039e+03;SOR=0.515;VQSLOD=8.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:68,61:129:99:1637,0,1848 1 226924642 rs3754415 C T 1266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=5.001;HaplotypeScore=15.0250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.433;SB=-6.900e+02;SOR=0.676;VQSLOD=4.85;culprit=FS GT:AD:DP:GQ:PL 0/1:46,50:96:99:1295,0,1214 1 227068242 rs369361698 GGACA G 748.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.24;RPA=2,1;RU=GACA;ReadPosRankSum=-2.553;SB=0.00;SOR=2.448;STR;VQSLOD=6.28;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:3,12:15:99:786,0,152 1 227069677 rs11405 T C 5045.77 PASS AC=2;AF=1.00;AN=2;DB;DP=176;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.67;SB=-2.605e+03;SOR=1.320;VQSLOD=3.35;culprit=DP GT:AD:DP:GQ:PL 1/1:0,176:176:99:5074,385,0 1 227069737 rs6759 C T 2552.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7186;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.36;SB=-6.170e+02;SOR=2.885;VQSLOD=3.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2581,205,0 1 227071364 rs1295643 G A 1463.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.27;SB=-3.577e+01;SOR=6.184;VQSLOD=4.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1492,117,0 1 227071377 rs1295644 T C 2062.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.69;SB=-1.731e+02;SOR=4.370;VQSLOD=5.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:2091,157,0 1 227071525 rs1046240 C T 4931.77 PASS AC=2;AF=1.00;AN=2;DB;DP=172;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.5611;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.67;SB=-2.849e+03;SOR=0.950;VQSLOD=6.21;culprit=DP GT:AD:DP:GQ:PL 1/1:0,172:172:99:4960,361,0 1 227073410 rs2236910 G C 3189.78 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-1.344e+03;SOR=1.677;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3218,235,0 1 227078955 rs2802267 T C 1896.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8839;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.61;SB=-7.320e+02;SOR=1.571;VQSLOD=5.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1925,144,0 1 227079222 rs2236915 C G 1774.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.1073;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.55;SB=-8.160e+02;SOR=1.051;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:51:99:1803,132,0 1 227081622 rs10753428 A G 1287.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.40;SB=-5.990e+02;SOR=1.659;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1316,99,0 1 227081850 rs2855562 G A 633.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-1.523e+02;SOR=2.636;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:51:662,51,0 1 227083550 rs8383 C T 398.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.23;SB=-3.976e+01;SOR=3.611;VQSLOD=7.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:427,33,0 1 227165097 rs3806263 G A 309.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.010;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=1.901;SB=-9.800e+01;SOR=0.793;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:19,13:32:99:338,0,506 1 227169481 rs78769374 G A 101.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.216;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.78;ReadPosRankSum=0.306;SB=-2.402e+01;SOR=1.432;VQSLOD=5.54;culprit=QD GT:AD:DP:GQ:PL 0/1:10,5:15:99:130,0,253 1 227170543 rs2297413 C G 790.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.018;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-0.824;SB=-4.690e+02;SOR=0.478;VQSLOD=9.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,31:67:99:819,0,912 1 227171584 rs3215919 GT G 274.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.74;RPA=3,2;RU=T;ReadPosRankSum=-1.256;SB=-6.400e+01;SOR=0.877;STR;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:11,9:21:99:312,0,349 1 227171737 . G T 391.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.022;DP=42;Dels=0.02;ExcessHet=3.0103;FS=4.114;HaplotypeScore=12.6433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.56;ReadPosRankSum=0.460;SB=-5.150e-01;SOR=1.646;VQSLOD=4.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,15:41:99:420,0,764 1 227171739 . G C,T 1312.77 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.9001;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;QD=31.26;SB=-9.401e+01;SOR=3.365;VQSLOD=5.14;culprit=FS GT:AD:DP:GQ:PL 1/2:0,25,17:42:99:1341,547,483,795,0,747 1 227172290 rs12593 C T 1922.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=2.180;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=0.621;SB=-1.012e+03;SOR=0.930;VQSLOD=7.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:65,71:136:99:1951,0,1618 1 227172903 rs2297415 G A 567.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.974;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=4.499;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=0.510;SB=-1.480e+02;SOR=0.166;VQSLOD=9.73;culprit=SOR GT:AD:DP:GQ:PL 0/1:16,20:36:99:596,0,456 1 227172935 rs2297416 C G 1013.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.396;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=4.633;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=-2.682;SB=-4.310e+02;SOR=0.233;VQSLOD=8.75;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:20,41:61:99:1042,0,551 1 227174145 rs7552783 T C 1263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=4.256;HaplotypeScore=3.6982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-0.555;SB=-5.440e+02;SOR=0.352;VQSLOD=9.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,49:100:99:1292,0,1448 1 227174210 rs3738725 T C 2082.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.259;DB;DP=179;Dels=0.00;ExcessHet=3.0103;FS=2.678;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=0.158;SB=-9.160e+02;SOR=0.979;VQSLOD=7.19;culprit=DP GT:AD:DP:GQ:PL 0/1:95,84:179:99:2111,0,2484 1 227181923 rs3795451 C T 186.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.123;SB=0.00;SOR=0.693;VQSLOD=10.18;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:215,0,245 1 227182033 rs2802269 G A 1462.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.488;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.13;ReadPosRankSum=0.214;SB=-5.018e+02;SOR=1.519;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 1/1:2,50:52:73:1491,73,0 1 227182575 rs1045247 A G 1849.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=-7.880e+02;SOR=1.609;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1878,144,0 1 227182754 rs2297419 G A 457.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.068;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.752;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=0.754;SB=-1.210e+02;SOR=0.230;VQSLOD=10.20;culprit=SOR GT:AD:DP:GQ:PL 0/1:24,17:41:99:486,0,791 1 227192579 rs2297418 A C 859.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=0.186;SB=-1.230e+02;SOR=0.611;VQSLOD=10.08;culprit=FS GT:AD:DP:GQ:PL 0/1:18,29:47:99:888,0,518 1 227204557 rs17600747 T C 738.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.513;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-0.570;SB=-3.720e+02;SOR=0.859;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:31,29:61:99:767,0,856 1 227210820 rs11580229 G A 520.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.723;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-1.654;SB=-1.940e+02;SOR=0.756;VQSLOD=9.29;culprit=FS GT:AD:DP:GQ:PL 0/1:21,22:43:99:549,0,578 1 227210888 rs11578479 A T 914.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.075;HaplotypeScore=3.3290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=1.131;SB=-4.800e+02;SOR=1.035;VQSLOD=7.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,37:66:99:943,0,690 1 227213968 rs7535826 G T 477.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.535;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-0.381;SB=-8.600e+01;SOR=1.096;VQSLOD=8.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,18:39:99:506,0,568 1 227216662 rs1929861 T C 1215.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.348;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=1.698;HaplotypeScore=5.0818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=-0.927;SB=-5.700e+02;SOR=0.990;VQSLOD=8.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,44:97:99:1244,0,1354 1 227216775 . C T 1080.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;DP=104;Dels=0.00;ExcessHet=3.0103;FS=3.715;HaplotypeScore=4.7187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.49;ReadPosRankSum=0.301;SB=-4.840e+02;SOR=1.091;VQSLOD=5.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,43:104:99:1109,0,1568 1 227219314 rs1319103 A G 88.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.847;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.34;ReadPosRankSum=-1.206;SB=0.00;SOR=0.188;VQSLOD=9.73;culprit=QD GT:AD:DP:GQ:PL 0/1:10,4:14:99:117,0,345 1 227221123 rs11582863 G A 985.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=2.487;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.65;ReadPosRankSum=-0.058;SB=-6.220e+02;SOR=0.797;VQSLOD=6.88;culprit=QD GT:AD:DP:GQ:PL 0/1:70,44:114:99:1014,0,1775 1 227221251 rs12031609 T C 920.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.312;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=4.605;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=0.884;SB=-1.980e+02;SOR=1.680;VQSLOD=5.76;culprit=FS GT:AD:DP:GQ:PL 0/1:23,31:54:99:949,0,529 1 227222515 rs66835709 G GACAA 3457.73 PASS AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.27;RPA=1,2;RU=ACAA;SB=-1.381e+03;SOR=1.220;STR;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:56:99:3495,163,0 1 227227740 rs12026688 A C 310.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.731;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.88;ReadPosRankSum=2.134;SB=-1.765e+00;SOR=0.693;VQSLOD=9.32;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:24,11:35:99:339,0,791 1 227239562 rs34111989 G C 894.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.247;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.807;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=-0.485;SB=-4.660e+02;SOR=0.909;VQSLOD=7.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,39:91:99:923,0,1401 1 227239746 rs10799381 G T 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.881;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.90;ReadPosRankSum=-0.377;SB=-9.732e-01;SOR=1.670;VQSLOD=6.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,8:22:99:246,0,419 1 227246890 . C CA 193.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQ0=0;MQRankSum=0.730;POSITIVE_TRAIN_SITE;QD=14.90;RPA=10,11;RU=A;ReadPosRankSum=-0.592;SB=-5.919e+01;SOR=0.446;STR;VQSLOD=3.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,10:14:40:231,0,40 1 227247160 rs10495265 A T 240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.30;ReadPosRankSum=-1.800;SB=-9.700e+01;SOR=0.657;VQSLOD=9.41;culprit=QD GT:AD:DP:GQ:PL 0/1:18,11:29:99:269,0,463 1 227300277 rs488104 G A 434.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.182;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.875;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.76;ReadPosRankSum=-0.923;SB=-2.000e+02;SOR=0.265;VQSLOD=8.89;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,14:22:99:463,0,262 1 227330759 rs12139502 A G 1726.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.84;SB=-8.150e+02;SOR=1.302;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1755,129,0 1 227335329 rs6685954 T C 340.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.337;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.830;SB=-3.401e+01;SOR=0.495;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:15,12:27:99:369,0,441 1 227381326 rs6696485 C T 546.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.70;SB=0.00;SOR=5.549;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:575,45,0 1 227381373 rs3768436 G T 934.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-1.205e+02;SOR=3.690;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:72:963,72,0 1 227381674 rs35780410 TA T 500.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQ0=0;MQRankSum=0.808;POSITIVE_TRAIN_SITE;QD=23.84;RPA=2,1;RU=A;ReadPosRankSum=-0.037;SB=-1.180e+02;SOR=0.551;STR;VQSLOD=3.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,14:21:99:538,0,242 1 227387361 rs3768434 A G 995.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.20;SB=-5.180e+02;SOR=1.329;VQSLOD=5.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:72:1024,72,0 1 227452040 rs4375224 G A 108.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.264;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.04;ReadPosRankSum=0.422;SB=-8.600e+01;SOR=0.693;VQSLOD=9.11;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:137,0,239 1 227681475 rs4653844 T C 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.820;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.19;MQ0=0;MQRankSum=-1.520;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.868;SB=-1.790e+02;SOR=0.264;VQSLOD=0.020;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,19:26:99:375,0,144 1 227729000 rs4653849 A G 182.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.116;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=-0.465;SB=-3.200e+01;SOR=1.002;VQSLOD=10.01;culprit=FS GT:AD:DP:GQ:PL 0/1:9,7:16:99:211,0,216 1 227825508 rs61322441 G A 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.548;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=1.278;SB=-3.200e+01;SOR=1.179;VQSLOD=8.37;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:163,0,145 1 227826788 rs68186506 C T 301.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=-1.007;SB=-1.210e+02;SOR=0.892;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:13,12:25:99:330,0,341 1 227834233 rs78467777 TC T 991.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;DB;DP=87;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.500;MQ=60.12;MQ0=0;MQRankSum=-0.928;POSITIVE_TRAIN_SITE;QD=12.09;RPA=9,8;RU=C;ReadPosRankSum=0.511;SB=-4.580e+02;SOR=0.625;STR;VQSLOD=0.017;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,39:87:99:1029,0,365 1 227834400 rs6426468 G A 1176.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-3.160e+02;SOR=2.242;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:93:1205,93,0 1 227920061 rs1060295 T G 333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.442;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.63;ReadPosRankSum=-0.369;SB=-8.197e+01;SOR=0.317;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:5,12:17:99:362,0,154 1 227920506 . G A 863.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.225;DP=54;Dels=0.00;ExcessHet=3.0103;FS=3.855;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.00;ReadPosRankSum=-0.511;SB=-4.220e+02;SOR=0.420;VQSLOD=7.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,27:54:99:892,0,845 1 227920665 rs41270159 A G 1473.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.097;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=4.124;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-0.096;SB=-6.580e+02;SOR=1.036;VQSLOD=6.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:83,55:138:99:1502,0,2157 1 227922918 rs2295994 A C 753.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.086;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.464;SB=-3.580e+02;SOR=0.698;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:27,30:57:99:782,0,730 1 227923081 rs7419238 G A 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290.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.107;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.10;ReadPosRankSum=1.463;SB=0.00;SOR=1.371;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:6,11:17:99:319,0,186 1 228003967 rs12121588 G A 204.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.90;ReadPosRankSum=-0.435;SB=-9.900e+01;SOR=0.693;VQSLOD=9.53;culprit=QD GT:AD:DP:GQ:PL 0/1:13,10:23:99:233,0,359 1 228033128 rs76957354 A C 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.851;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.944;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=0.396;SB=-9.732e-01;SOR=1.765;VQSLOD=5.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,10:26:99:317,0,516 1 228033197 rs9426581 A G 978.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.688;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.027;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=0.481;SB=-3.460e+02;SOR=0.929;VQSLOD=7.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,35:65:99:1007,0,720 1 228108932 rs3795767 A G 167.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.366;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.99;ReadPosRankSum=0.146;SB=-9.600e+01;SOR=1.230;VQSLOD=8.21;culprit=QD GT:AD:DP:GQ:PL 0/1:14,10:24:99:196,0,392 1 228109137 rs35718701 A G 1251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.927;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=5.707;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=-0.256;SB=-7.150e+02;SOR=0.305;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:40,47:88:99:1280,0,1096 1 228112121 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226.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.40;ReadPosRankSum=2.162;SB=-1.290e+02;SOR=0.495;VQSLOD=8.58;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:18,9:27:99:255,0,530 1 228333652 rs11577976 G A 789.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.900;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.651;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.80;ReadPosRankSum=-1.842;SB=-4.710e+02;SOR=0.241;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:16,31:47:99:818,0,371 1 228334418 rs3216021 GAT G 851.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.39;ReadPosRankSum=1.863;SB=0.00;SOR=0.976;VQSLOD=8.17;culprit=FS GT:AD:DP:GQ:PL 0/1:13,17:30:99:889,0,668 1 228334436 rs55873533 G A 731.77 PASS 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AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-3.670e+02;SOR=1.923;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:87:1197,87,0 1 228402508 rs2776853 C T 3869.77 PASS AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.95;SB=-9.190e+02;SOR=2.657;VQSLOD=6.88;culprit=DP GT:AD:DP:GQ:PL 1/1:0,114:115:99:3898,289,0 1 228404198 rs61501937 G A 266.80 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.25;SB=-1.891e+02;SOR=0.859;VQSLOD=5.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:21:295,21,0 1 228404668 rs3795777 T C 547.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.22;SB=-1.105e+02;SOR=2.712;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:576,42,0 1 228405118 . G GA 220.74 PASS AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.53;RPA=10,11;RU=A;SB=0.00;SOR=4.615;STR;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,9:12:27:258,27,0 1 228407010 rs1757158 C T 2248.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-1.387e+03;SOR=0.693;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2277,169,0 1 228407260 rs1771484 G A 718.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-3.540e+02;SOR=1.270;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:54:747,54,0 1 228407265 rs61560753 G A 672.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-3.150e+02;SOR=1.329;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:51:701,51,0 1 228412106 rs1771482 T C 1723.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.34;SB=-6.920e+02;SOR=1.739;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1752,126,0 1 228412227 rs1771480 T C 2461.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-1.605e+03;SOR=0.718;VQSLOD=5.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2490,178,0 1 228412228 rs1757153 G A 2321.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-1.468e+03;SOR=0.693;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2350,175,0 1 228412308 rs1757152 G A 3613.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.44;SB=-1.186e+03;SOR=1.832;VQSLOD=3.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:3642,274,0 1 228430697 rs1771456 A G 1289.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.94;SB=-2.031e+02;SOR=3.500;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1318,99,0 1 228431095 rs1771455 A G 1288.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.42;SB=-8.820e+02;SOR=0.735;VQSLOD=5.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:96:1317,96,0 1 228431235 rs11584385 G A 444.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-1.085e+02;SOR=2.448;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:473,36,0 1 228431930 rs10916293 C T 5877.77 PASS AC=2;AF=1.00;AN=2;DB;DP=196;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-2.797e+03;SOR=1.402;VQSLOD=5.95;culprit=DP GT:AD:DP:GQ:PL 1/1:0,196:196:99:5906,448,0 1 228432987 rs1757129 G C 1620.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.42;SB=-3.970e+02;SOR=2.701;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1649,120,0 1 228433088 . G C 1003.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.313;DP=109;Dels=0.00;ExcessHet=3.0103;FS=1.610;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.21;ReadPosRankSum=-2.270;SB=-5.280e+02;SOR=0.899;VQSLOD=5.14;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:69,40:109:99:1032,0,1798 1 228433217 rs2487384 A G 1829.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;SB=-3.960e+02;SOR=2.628;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1858,141,0 1 228434395 rs7517088 T C 1142.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.65;SB=-3.900e+02;SOR=1.885;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:93:1171,93,0 1 228434467 rs7517108 T C 507.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.72;SB=-3.590e+02;SOR=0.793;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:39:536,39,0 1 228437603 rs6426494 T C 1960.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.14;SB=-9.590e+02;SOR=1.197;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1989,144,0 1 228444318 rs7532144 T G 359.78 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.99;SB=-2.391e+02;SOR=1.112;VQSLOD=4.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:27:388,27,0 1 228444563 rs372472787 G A 378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.671;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.03;ReadPosRankSum=-0.850;SB=-1.700e+02;SOR=1.140;VQSLOD=8.50;culprit=FS GT:AD:DP:GQ:PL 0/1:13,14:27:99:407,0,334 1 228444565 rs7532342 T A 760.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-3.930e+02;SOR=1.136;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:789,60,0 1 228444741 rs3795780 C T 285.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.58;SB=-8.197e+01;SOR=2.303;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:314,24,0 1 228447513 rs7525075 T G 1500.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.35;SB=-4.350e+02;SOR=2.252;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1529,111,0 1 228447519 rs7525078 T A 1426.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-4.240e+02;SOR=2.200;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1455,108,0 1 228455937 rs489926 T C 1003.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=0.00;SOR=6.593;VQSLOD=8.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:78:1032,78,0 1 228456147 rs878388 T C 3848.77 PASS AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5655;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=-2.443e+03;SOR=0.921;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,134:134:99:3877,286,0 1 228461129 rs1188724 A G 695.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;SB=-3.770e+02;SOR=0.859;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:54:724,54,0 1 228461408 . A AG 1845.73 PASS AC=2;AF=1.00;AN=2;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.03;RPA=3,4;RU=G;SB=-6.960e+02;SOR=1.298;STR;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1883,144,0 1 228461757 rs474735 G A 2806.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8315;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-9.800e+02;SOR=1.927;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2835,208,0 1 228464100 rs936884 G A 331.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.16;SB=-1.065e+02;SOR=1.802;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:360,27,0 1 228464248 rs1188721 T G 1322.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.76;SB=-7.870e+02;SOR=0.976;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:96:1351,96,0 1 228464276 rs1188722 T C 1418.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.95;SB=-9.080e+02;SOR=0.909;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1447,102,0 1 228464842 rs936885 C G 3639.77 PASS AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=-2.292e+03;SOR=0.710;VQSLOD=5.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,119:120:99:3668,265,0 1 228465346 rs493945 A G 3130.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=-1.676e+03;SOR=0.880;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:3159,232,0 1 228465370 rs867599 T G 3415.77 PASS AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.92;SB=-1.824e+03;SOR=1.056;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,107:107:99:3444,247,0 1 228465674 rs10623092 C CAAG 990.73 PASS AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-1.330e+02;SOR=3.258;VQSLOD=5.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:17:48:1028,48,0 1 228466750 rs3795782 T C 1574.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.87;SB=-2.780e+02;SOR=3.160;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1603,129,0 1 228466862 rs3820627 C T 1432.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.24;SB=-5.420e+02;SOR=1.911;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1461,111,0 1 228467333 rs11581037 C G 386.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=-2.051e+02;SOR=1.022;VQSLOD=5.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:415,30,0 1 228468566 rs4653934 A G 360.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.31;SB=0.00;SOR=4.804;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:389,30,0 1 228471379 rs56168609 G C 3237.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-1.550e+03;SOR=1.374;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3266,238,0 1 228480282 rs1150908 A G 3067.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-1.640e+03;SOR=0.973;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:3096,229,0 1 228480964 rs10158357 A G 2448.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SB=-7.880e+02;SOR=2.062;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2477,184,0 1 228482028 rs4653547 G C 5287.77 PASS AC=2;AF=1.00;AN=2;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.11;SB=-2.568e+03;SOR=1.065;VQSLOD=6.06;culprit=DP GT:AD:DP:GQ:PL 1/1:0,155:155:99:5316,388,0 1 228482285 rs1150909 T C 2499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.30;SB=-8.920e+02;SOR=1.678;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2528,190,0 1 228486404 rs56021350 C T 3685.77 PASS AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-1.818e+03;SOR=1.198;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,119:119:99:3714,274,0 1 228491633 rs11584418 G A 2435.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.00;SB=-1.136e+03;SOR=1.356;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2464,181,0 1 228494357 rs3795795 C T 2626.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=-1.051e+03;SOR=1.662;VQSLOD=5.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2655,196,0 1 228494382 rs1150911 T C 2231.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-1.025e+03;SOR=1.519;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2260,160,0 1 228494438 rs3795797 C T 1399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.30;SB=-3.110e+02;SOR=2.613;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1428,108,0 1 228494696 rs4653939 G A 1305.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SB=-6.750e+02;SOR=1.179;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1334,99,0 1 228495664 rs419338 T A 632.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.30;SB=0.00;SOR=5.994;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:661,54,0 1 228495696 rs419173 T C 1053.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.50;SB=-1.245e+02;SOR=3.912;VQSLOD=4.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:81:1082,81,0 1 228496014 rs876180 G A 3011.77 PASS AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.53;SB=-1.613e+03;SOR=1.157;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:102:99:3040,229,0 1 228497053 rs379620 A G 4959.77 PASS AC=2;AF=1.00;AN=2;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-2.831e+03;SOR=0.861;VQSLOD=4.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,152:152:99:4988,367,0 1 228503677 rs1150912 A G 2283.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.45;SB=-1.430e+03;SOR=0.832;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2312,172,0 1 228504472 rs1188732 T C 1856.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-6.850e+02;SOR=1.569;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1885,141,0 1 228504591 rs61825301 C A 2626.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SB=-1.597e+03;SOR=0.959;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:2655,190,0 1 228504669 rs61825302 G A 1464.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-3.840e+02;SOR=2.608;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1493,114,0 1 228504701 rs371837128 G GCTCC 2152.73 PASS AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-2.235e+02;SOR=3.981;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:32:93:2190,93,0 1 228505204 rs4653942 G A 1069.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.72;SB=-4.900e+02;SOR=1.209;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:81:1098,81,0 1 228505668 rs1188729 C G 1494.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.18;SB=-6.080e+02;SOR=1.347;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1523,111,0 1 228505699 rs1188728 T C 1502.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.15;SB=-6.000e+02;SOR=1.230;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:45:99:1531,114,0 1 228505739 rs3795801 G A 1804.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=-8.160e+02;SOR=1.382;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1833,135,0 1 228509427 rs373610 A G 6752.77 PASS AC=2;AF=1.00;AN=2;DB;DP=207;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3905;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.62;SB=-3.233e+03;SOR=1.195;VQSLOD=6.20;culprit=DP GT:AD:DP:GQ:PL 1/1:0,207:207:99:6781,491,0 1 228509911 rs368401317 C T 939.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.332;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=1.045;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.24;ReadPosRankSum=-1.289;SB=-3.280e+02;SOR=0.484;VQSLOD=8.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,36:71:99:968,0,998 1 228522483 rs11581192 C T 1678.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=-5.840e+02;SOR=1.981;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1707,123,0 1 228523447 rs10799473 T C 2122.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.30;SB=-8.700e+02;SOR=1.578;VQSLOD=6.85;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,75:75:99:2151,157,0 1 228524642 rs56063628 T C 1127.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;SB=-2.900e+02;SOR=2.432;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:84:1156,84,0 1 228525207 rs12023522 C T 205.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=2.753;SB=0.00;SOR=0.582;VQSLOD=8.74;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:8,7:15:99:234,0,244 1 228526011 rs11577699 C T 2643.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.569;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.04;ReadPosRankSum=-1.083;SB=-1.386e+03;SOR=0.433;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:1,87:88:99:2672,159,0 1 228527844 rs11588701 T G 785.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.762;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.27;ReadPosRankSum=1.454;SB=-9.300e+01;SOR=1.270;VQSLOD=5.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,26:43:99:814,0,449 1 228538597 rs377306477 C T 1005.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.513;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.41;ReadPosRankSum=1.162;SB=-6.040e+02;SOR=0.735;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 0/1:36,39:75:99:1034,0,905 1 228550429 rs11585049 C T 466.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.925;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=-0.522;SB=-1.640e+02;SOR=0.859;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:21,20:41:99:495,0,657 1 228556036 rs374229613 G A 482.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.471;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.28;ReadPosRankSum=-0.517;SB=-1.970e+02;SOR=1.230;VQSLOD=5.67;culprit=QD GT:AD:DP:GQ:PL 0/1:32,20:52:99:511,0,765 1 228560139 rs498382 A G 1379.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.65;SB=-6.570e+02;SOR=0.954;VQSLOD=5.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1408,108,0 1 228560700 rs512253 T C 735.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.82;ReadPosRankSum=-1.522;SB=-5.410e+02;SOR=0.636;VQSLOD=5.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,34:68:99:764,0,953 1 228560779 rs199507775 G A 1117.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.089;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.44;ReadPosRankSum=-1.266;SB=-6.360e+02;SOR=0.628;VQSLOD=7.98;culprit=FS GT:AD:DP:GQ:PL 0/1:27,41:68:99:1146,0,714 1 228560990 rs579897 G A 57.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.78;ReadPosRankSum=-1.440;SB=0.00;SOR=0.223;VQSLOD=9.00;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:86:86,0,249 1 228601638 rs472594 T C 890.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.851;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=0.018;SB=-5.220e+02;SOR=0.607;VQSLOD=10.02;culprit=FS GT:AD:DP:GQ:PL 0/1:21,33:54:99:919,0,545 1 228612838 rs2230656 G T 1139.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.52;SB=-2.231e+02;SOR=2.899;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:93:1168,93,0 1 228613052 rs1188474 T C 2217.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.68;SB=-1.142e+03;SOR=0.941;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2246,166,0 1 228645063 rs10916317 A G 1185.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-5.190e+02;SOR=1.493;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:87:1214,87,0 1 228699477 rs6665115 T C 1908.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=1.992;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=0.915;SB=-1.059e+03;SOR=0.518;VQSLOD=7.48;culprit=DP GT:AD:DP:GQ:PL 0/1:87,72:159:99:1937,0,2279 1 228786215 . A G 862.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.435;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.254;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.88;ReadPosRankSum=-1.312;SB=-4.100e+02;SOR=0.845;VQSLOD=4.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,32:67:99:891,0,991 1 228786580 rs4654723 C T 408.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.464;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.176;SB=-1.270e+02;SOR=0.990;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:13,16:29:99:437,0,413 1 228873640 rs3215603 GT G 588.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.76;RPA=2,1;RU=T;ReadPosRankSum=-0.369;SB=-1.230e+02;SOR=0.859;STR;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 0/1:6,16:22:99:626,0,197 1 229385256 rs6695100 G A 127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-0.177;SB=-1.765e+00;SOR=1.609;VQSLOD=9.21;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:156,0,190 1 229422193 rs237764 T C 395.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.27;SB=-1.235e+02;SOR=2.303;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:33:424,33,0 1 229438828 rs237787 G A 856.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-4.076e+01;SOR=4.892;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:66:885,66,0 1 229461315 rs237801 A G 862.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-1.463e+02;SOR=3.180;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:66:891,66,0 1 229463035 rs237804 A G 499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.29;SB=0.00;SOR=5.283;VQSLOD=7.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:528,39,0 1 229568231 ACTA1 T G 409.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.30;SB=-3.177e+01;SOR=3.442;VQSLOD=7.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:438,33,0 1 229663064 rs113712941 GAGGAA G 2906.73 PASS AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;RPA=3,2;RU=AGGAA;SB=-1.285e+03;SOR=1.005;STR;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:44:99:2944,126,0 1 229783236 rs6587349 T C 1696.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-7.350e+02;SOR=1.251;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1725,126,0 1 229787030 rs12142450 G A 2783.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.468;DB;DP=223;Dels=0.00;ExcessHet=3.0103;FS=1.687;HaplotypeScore=1.6649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.310;SB=-1.499e+03;SOR=0.511;VQSLOD=7.16;culprit=DP GT:AD:DP:GQ:PL 0/1:107,116:223:99:2812,0,2645 1 229794844 . C T 744.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.667;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.399;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.62;ReadPosRankSum=-0.487;SB=-2.990e+02;SOR=0.495;VQSLOD=7.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,28:41:99:773,0,289 1 229841139 rs7535031 C T 367.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=0.497;SB=-1.020e+02;SOR=1.061;VQSLOD=10.37;culprit=FS GT:AD:DP:GQ:PL 0/1:10,13:23:99:396,0,264 1 230371883 rs3811488 G A 718.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.626;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-1.665;SB=-2.680e+02;SOR=0.728;VQSLOD=9.34;culprit=FS GT:AD:DP:GQ:PL 0/1:35,25:60:99:747,0,1097 1 230384970 rs1923950 G A 1103.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=2.849;HaplotypeScore=1.9576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-1.030;SB=-5.290e+02;SOR=1.064;VQSLOD=7.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,44:89:99:1132,0,1108 1 230386341 rs2273966 T A 744.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.843;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.918;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.97;ReadPosRankSum=0.256;SB=-2.480e+02;SOR=0.854;VQSLOD=6.85;culprit=QD GT:AD:DP:GQ:PL 0/1:53,30:83:99:773,0,1420 1 230451935 rs376956987 C CAT 854.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.47;RPA=1,2;RU=AT;ReadPosRankSum=0.945;SB=-2.010e+02;SOR=1.022;STR;VQSLOD=8.44;culprit=FS GT:AD:DP:GQ:PL 0/1:11,18:29:99:892,0,480 1 230451978 rs11122492 G A 556.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.342;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=-1.627;SB=-2.670e+02;SOR=1.162;VQSLOD=6.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,22:37:99:585,0,368 1 230459433 rs35048134 GC G 696.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;DB;DP=65;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=60.17;MQ0=0;MQRankSum=1.132;POSITIVE_TRAIN_SITE;QD=12.67;RPA=7,6;RU=C;ReadPosRankSum=0.507;SB=-1.810e+02;SOR=0.495;STR;VQSLOD=0.148;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,25:65:99:734,0,901 1 230473103 rs10864744 A C 356.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.080;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.696;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-0.590;SB=-1.760e+02;SOR=0.233;VQSLOD=9.81;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,14:29:99:385,0,415 1 230492801 rs41315609 C T 1666.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=1.304;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-0.640;SB=-9.580e+02;SOR=0.587;VQSLOD=8.07;culprit=DP GT:AD:DP:GQ:PL 0/1:82,63:145:99:1695,0,2146 1 230497814 rs828477 A G 295.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;SB=0.00;SOR=4.804;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:324,27,0 1 230497828 rs2003356 A G 409.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.15;SB=0.00;SOR=5.136;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:438,36,0 1 230497829 rs882067 C A 438.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.40;SB=0.00;SOR=5.136;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:467,36,0 1 230497844 rs828478 C G 676.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.07;SB=0.00;SOR=5.784;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:705,51,0 1 230497940 rs828479 G T 2039.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-4.740e+02;SOR=2.730;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2068,163,0 1 230498232 rs2820384 C T 2220.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.14;SB=-4.276e+01;SOR=6.736;VQSLOD=2.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:2249,172,0 1 230503684 rs2632571 C T 1495.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.82;SB=-3.540e+02;SOR=2.786;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1524,114,0 1 230513128 rs828463 G A 1102.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-3.080e+02;SOR=2.303;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:84:1131,84,0 1 230798864 . C CT 308.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;DP=47;ExcessHet=3.0103;FS=2.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.71;RPA=11,12;RU=T;ReadPosRankSum=1.115;SB=-1.360e+02;SOR=0.346;STR;VQSLOD=7.38;culprit=QD GT:AD:DP:GQ:PL 0/1:28,18:47:99:346,0,548 1 230819155 rs35756888 TA T 89.74 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQ0=0;MQRankSum=0.349;POSITIVE_TRAIN_SITE;QD=8.16;RPA=20,19;RU=A;ReadPosRankSum=0.886;SB=-2.578e+01;SOR=0.693;STR;VQSLOD=3.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,8:12:26:127,0,26 1 230819479 . G GT 249.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.95;RPA=12,13;RU=T;ReadPosRankSum=0.064;SB=-4.300e+01;SOR=0.621;STR;VQSLOD=8.77;culprit=QD GT:AD:DP:GQ:PL 0/1:25,17:45:99:287,0,455 1 230820763 rs3831130 C CACATT 2722.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.42;RPA=1,2;RU=ACATT;ReadPosRankSum=-0.554;SB=-5.190e+02;SOR=0.722;STR;VQSLOD=8.88;culprit=FS GT:AD:DP:GQ:PL 0/1:42,38:81:99:2760,0,2951 1 230822607 rs1536591 G A 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-0.175;SB=-1.765e+00;SOR=1.609;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:166,0,152 1 230825942 rs3000064 A G 354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=4.151;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=1.432;SB=-4.600e+01;SOR=1.911;VQSLOD=5.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,13:27:99:383,0,358 1 230828987 rs2478534 C A 377.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=0.522;SB=-1.790e+02;SOR=0.527;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:7,14:21:99:406,0,156 1 230841509 rs2478523 A G 202.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.743;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=1.142;SB=0.00;SOR=0.321;VQSLOD=10.02;culprit=FS GT:AD:DP:GQ:PL 0/1:12,7:19:99:231,0,385 1 230841559 rs3827749 G A 455.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.469;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=-1.579;SB=0.00;SOR=0.495;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:19,15:34:99:484,0,594 1 230841687 rs7080 T C 5322.77 PASS AC=2;AF=1.00;AN=2;DB;DP=171;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3800;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-2.654e+03;SOR=1.254;VQSLOD=6.45;culprit=DP GT:AD:DP:GQ:PL 1/1:0,171:171:99:5351,385,0 1 230845794 rs699 A G 1854.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.080;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=7.505;HaplotypeScore=1.8305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-0.676;SB=-8.360e+02;SOR=1.258;VQSLOD=5.12;culprit=FS GT:AD:DP:GQ:PL 0/1:71,74:145:99:1883,0,1761 1 230883484 rs6690251 T C 1471.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.047;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=0.251;SB=-5.370e+02;SOR=0.622;VQSLOD=9.11;culprit=FS GT:AD:DP:GQ:PL 0/1:57,54:111:99:1500,0,1457 1 230883499 rs6690254 T C 1351.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.311;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.061;SB=-4.450e+02;SOR=0.765;VQSLOD=8.20;culprit=FS GT:AD:DP:GQ:PL 0/1:51,50:101:99:1380,0,1350 1 230895340 rs28359608 C A 571.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.034;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=6.617;HaplotypeScore=4.4224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=0.772;SB=-2.990e+02;SOR=0.162;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:30,23:53:99:600,0,888 1 230903234 rs11122590 A G 243.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.310;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=1.471;SB=-3.100e+01;SOR=0.765;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:15,10:25:99:272,0,442 1 230910485 . CTT C 505.90 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQ0=0;MQRankSum=0.435;POSITIVE_TRAIN_SITE;QD=12.97;RPA=19,17;RU=T;ReadPosRankSum=1.041;SB=-7.894e+00;SOR=1.765;STR;VQSLOD=2.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,21:54:99:529,0,196 1 230914529 . G T 352.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.903;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.70;ReadPosRankSum=-1.827;SB=-6.600e+01;SOR=0.892;VQSLOD=8.20;culprit=FS GT:AD:DP:GQ:PL 0/1:11,13:24:99:381,0,305 1 230914729 rs1933631 A C 1472.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.120;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=3.249;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.107;SB=-8.220e+02;SOR=0.992;VQSLOD=7.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,61:124:99:1501,0,1531 1 230925868 . A T 455.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.292;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.129;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.30;ReadPosRankSum=0.374;SB=-2.620e+02;SOR=1.048;VQSLOD=5.76;culprit=QD GT:AD:DP:GQ:PL 0/1:28,21:49:99:484,0,722 1 230975454 rs1202550 A G 335.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=-4.276e+01;SOR=3.258;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:364,27,0 1 231042732 rs3811502 T A 384.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.501;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=1.396;SB=-2.350e+02;SOR=0.469;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 0/1:23,17:40:99:413,0,605 1 231047310 rs10580953 TAC T 375.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=-0.907;SB=-9.200e+01;SOR=0.719;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:16,9:26:99:413,0,798 1 231057247 rs2275333 A T 44.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.754;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.36;ReadPosRankSum=0.504;SB=-1.352e-01;SOR=1.609;VQSLOD=4.49;culprit=QD GT:AD:DP:GQ:PL 0/1:16,3:19:73:73,0,435 1 231064546 rs1343674 T C 136.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-1.158;SB=0.00;SOR=0.551;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:165,0,190 1 231092180 rs11122161 G A 923.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SB=-4.290e+02;SOR=1.473;VQSLOD=5.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:69:952,69,0 1 231092211 . T TG 968.73 PASS AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;RPA=2,3;RU=G;SB=-3.010e+02;SOR=1.802;STR;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:25:72:1006,72,0 1 231093785 rs59207624 CT C 774.73 PASS AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.82;RPA=10,9;RU=T;SB=-1.631e+02;SOR=2.621;STR;VQSLOD=5.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:31:90:812,90,0 1 231094050 rs60736833 GA G 617.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.41;MQ0=0;MQRankSum=1.469;POSITIVE_TRAIN_SITE;QD=14.04;RPA=16,15;RU=A;ReadPosRankSum=-0.480;SB=-2.140e+02;SOR=0.883;STR;VQSLOD=3.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,35:53:49:655,0,49 1 231115211 rs7417590 G A 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.301;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=-2.452;SB=0.00;SOR=1.473;VQSLOD=9.10;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,10:15:99:317,0,157 1 231124055 rs10779804 T C 1361.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.97;SB=-7.690e+02;SOR=1.132;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1390,99,0 1 231156029 rs10864654 A G 158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.727;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=0.229;SB=0.00;SOR=0.399;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:9,6:15:99:187,0,318 1 231320720 rs41304012 A T 317.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.579;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=-1.076;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=1.529;SB=-1.330e+02;SOR=0.616;VQSLOD=3.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,13:30:99:346,0,485 1 231321943 rs12070228 C A 3159.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.68;SB=-1.852e+03;SOR=0.752;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:3188,238,0 1 231322043 rs12096847 A G 2079.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.04;SB=-8.620e+02;SOR=1.716;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2108,150,0 1 231323140 rs6693752 T A 324.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=0.00;SOR=4.804;VQSLOD=7.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:353,27,0 1 231323339 rs16853942 A G 974.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.767;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=0.791;SB=-6.890e+02;SOR=0.713;VQSLOD=8.72;culprit=FS GT:AD:DP:GQ:PL 0/1:44,42:87:99:1003,0,1096 1 231334780 rs11122249 C A 1163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.550;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=8.249;HaplotypeScore=4.4522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=0.311;SB=-3.910e+02;SOR=1.534;VQSLOD=5.11;culprit=FS GT:AD:DP:GQ:PL 0/1:54,46:100:99:1192,0,1576 1 231335983 rs139376072 C T 1525.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.903;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.750;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-0.789;SB=-5.160e+02;SOR=0.592;VQSLOD=8.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:69,60:129:99:1554,0,1753 1 231336946 rs57632781 G A 534.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.008;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=5.073;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.637;SB=-2.790e+02;SOR=0.212;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:19,21:40:99:563,0,545 1 231337031 rs11122252 C A 1200.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.683;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=10.057;HaplotypeScore=3.3688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=0.645;SB=-3.250e+02;SOR=1.901;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 0/1:38,45:84:99:1229,0,1033 1 231339713 rs11806609 C T 1148.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=2.962;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=-0.461;SB=-6.260e+02;SOR=1.002;VQSLOD=7.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,45:82:99:1177,0,926 1 231344589 rs75728373 C T 348.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.38;ReadPosRankSum=-0.951;SB=0.00;SOR=1.179;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:377,0,224 1 231353462 rs6691392 A G 674.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.027;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=5.089;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=-0.344;SB=-2.860e+02;SOR=0.218;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:20,27:47:99:703,0,566 1 231377081 rs518686 C T 1237.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5810;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.79;SB=-6.770e+02;SOR=1.055;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:96:1266,96,0 1 231396116 rs34912601 T TTA 506.74 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.79;SB=0.00;SOR=4.804;VQSLOD=8.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:544,30,0 1 231400905 rs849714 A G 509.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.07;SB=0.00;SOR=5.283;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:538,39,0 1 231401596 rs532226 T C 1849.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-4.390e+02;SOR=2.712;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1878,135,0 1 231401902 rs574553 G A 3327.77 PASS AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-1.649e+03;SOR=1.200;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,109:109:99:3356,247,0 1 231406295 rs3767758 T C 572.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.79;SB=-7.397e+01;SOR=3.258;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:45:601,45,0 1 231406410 . T C 1164.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.397;DP=87;Dels=0.00;ExcessHet=3.0103;FS=1.796;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.39;ReadPosRankSum=-0.221;SB=-4.940e+02;SOR=0.912;VQSLOD=6.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,45:87:99:1193,0,1012 1 231557255 rs12097901 C G 255.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=6.767;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=0.654;SB=-1.255e+02;SOR=0.039;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:284,0,311 1 231664607 rs41303127 C T 1399.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.512;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=6.246;HaplotypeScore=2.7261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=1.387;SB=-9.300e+02;SOR=0.369;VQSLOD=7.73;culprit=FS GT:AD:DP:GQ:PL 0/1:48,57:105:99:1428,0,1131 1 231699398 rs11313472 AT A 104.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039;DB;DP=18;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.48;RPA=20,19;RU=T;ReadPosRankSum=-0.284;SB=-1.136e+01;SOR=1.981;STR;VQSLOD=5.56;culprit=QD GT:AD:DP:GQ:PL 0/1:4,10:18:48:142,0,48 1 231727447 rs1655305 A G 2740.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-1.288e+03;SOR=1.039;VQSLOD=6.99;culprit=DP GT:AD:DP:GQ:PL 1/1:0,85:85:99:2769,208,0 1 231747989 rs7548847 G A 631.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=0.00;SOR=4.514;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:660,54,0 1 231936016 rs2759354 A G 1111.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;SB=-4.030e+02;SOR=1.802;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:81:1140,81,0 1 231954427 rs1535530 C T 365.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.469;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.38;ReadPosRankSum=0.578;SB=-4.276e+01;SOR=1.179;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:3,12:15:62:394,0,62 1 231954609 rs1535529 G A 191.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=-0.389;SB=0.00;SOR=1.022;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:220,0,144 1 232144598 rs821616 A T 1489.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.059;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=9.022;HaplotypeScore=2.7880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.957;SB=-8.080e+02;SOR=0.261;VQSLOD=5.52;culprit=FS GT:AD:DP:GQ:PL 0/1:62,64:126:99:1518,0,1710 1 232144887 rs821617 A G 902.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.097;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.455;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=-0.925;SB=-2.180e+02;SOR=0.380;VQSLOD=9.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,30:53:99:931,0,729 1 232534957 rs12043251 T C 4841.77 PASS AC=2;AF=1.00;AN=2;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-2.779e+03;SOR=0.873;VQSLOD=6.87;culprit=DP GT:AD:DP:GQ:PL 1/1:0,155:155:99:4870,352,0 1 232535030 rs629939 C T 4484.77 PASS AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5975;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.21;SB=-2.395e+03;SOR=1.157;VQSLOD=5.90;culprit=DP GT:AD:DP:GQ:PL 1/1:0,159:159:99:4513,337,0 1 232539219 rs2275303 C T 724.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=1.056;SB=-2.470e+02;SOR=0.862;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:27,27:54:99:753,0,629 1 232539412 rs2275304 T C 458.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.703;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=1.324;SB=-7.000e+01;SOR=1.085;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:11,15:26:99:487,0,326 1 232539811 rs2275306 T A 731.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.085;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=-0.246;SB=-2.650e+02;SOR=0.712;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:32,29:61:99:760,0,861 1 232551416 rs12569188 G A 498.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.692;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=4.001;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.60;ReadPosRankSum=-0.630;SB=-1.600e+02;SOR=1.405;VQSLOD=6.21;culprit=QD GT:AD:DP:GQ:PL 0/1:38,20:58:99:527,0,978 1 232567946 rs3765572 C T 195.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.569;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=0.476;SB=0.00;SOR=0.283;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:13,7:20:99:224,0,453 1 232568041 rs1547742 G A 664.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.203;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=1.496;SB=-3.980e+02;SOR=0.444;VQSLOD=9.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,28:59:99:693,0,802 1 232568293 rs1547741 A G 1575.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.83;SB=-4.590e+02;SOR=2.030;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1604,117,0 1 232568409 rs12030131 C T 206.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=-1.562;SB=0.00;SOR=0.836;VQSLOD=10.18;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:235,0,207 1 232574635 rs11338638 GA G 85.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.14;RPA=13,12;RU=A;ReadPosRankSum=-0.547;SB=0.00;SOR=1.022;STR;VQSLOD=9.23;culprit=QD GT:AD:DP:GQ:PL 0/1:5,7:12:99:123,0,102 1 232574921 rs2275307 T C 1699.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=3.981;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=0.300;SB=-8.690e+02;SOR=0.437;VQSLOD=7.92;culprit=DP GT:AD:DP:GQ:PL 0/1:79,66:145:99:1728,0,2013 1 232576998 rs12036020 T A 1140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.508;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=1.753;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=-0.504;SB=-5.280e+02;SOR=0.951;VQSLOD=7.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,45:91:99:1169,0,1274 1 232579597 rs4649372 T A 340.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.284;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.109;SB=-9.700e+01;SOR=0.941;VQSLOD=9.99;culprit=FS GT:AD:DP:GQ:PL 0/1:13,12:25:99:369,0,319 1 232581247 rs1409369 C G 802.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.420;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.985;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=2.628;SB=-3.030e+02;SOR=0.960;VQSLOD=6.48;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:39,30:69:99:831,0,1092 1 232596469 rs2357068 C T 323.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=0.918;SB=-5.900e+01;SOR=0.984;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:21,12:33:99:352,0,539 1 232597919 rs78044234 C T 826.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.953;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.143;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.182;SB=-4.450e+02;SOR=0.400;VQSLOD=9.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,35:67:99:855,0,830 1 232601208 rs7536385 A G 135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.721;HaplotypeScore=1.6649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.43;ReadPosRankSum=0.595;SB=-8.700e+01;SOR=0.374;VQSLOD=8.04;culprit=QD GT:AD:DP:GQ:PL 0/1:16,9:25:99:164,0,440 1 232607065 rs16857291 G A 512.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.315;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=2.073;SB=-3.377e+01;SOR=0.223;VQSLOD=9.12;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:16,17:33:99:541,0,454 1 232941153 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T C 433.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.779;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.143;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.86;ReadPosRankSum=-2.461;SB=-3.023e+02;SOR=0.214;VQSLOD=7.16;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,18:23:99:462,0,138 1 233091276 . CT C 234.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DP=65;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.19;RPA=19,18;RU=T;ReadPosRankSum=0.000;SB=-1.070e+02;SOR=1.099;STR;VQSLOD=3.31;culprit=QD GT:AD:DP:GQ:PL 0/1:35,21:65:99:272,0,549 1 233113827 rs1045158 G T 1003.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.433;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.423;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=-0.123;SB=-2.250e+02;SOR=1.132;VQSLOD=7.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,35:68:99:1032,0,841 1 233137225 rs140788891 CATAA C 1438.73 PASS AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;RPA=11,10;RU=ATAA;SB=-2.741e+02;SOR=2.833;STR;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:31:84:1476,84,0 1 233150270 rs6424263 T C 282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.807;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=0.114;SB=0.00;SOR=1.112;VQSLOD=10.40;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:311,0,189 1 233160772 rs17355937 T C 2142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.687;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-0.386;SB=-1.042e+03;SOR=0.642;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 0/1:63,80:143:99:2171,0,1580 1 233296399 rs66823859 A AG 948.73 PASS AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.02;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-1.993e+02;SOR=2.636;VQSLOD=6.36;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,21:21:63:986,63,0 1 233296891 rs2296515 T C 2466.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.028;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.02;ReadPosRankSum=0.713;SB=-1.120e+03;SOR=0.538;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:1,84:85:99:2495,149,0 1 233296908 rs2296516 T G 2971.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.445;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.72;ReadPosRankSum=0.887;SB=-1.499e+03;SOR=1.237;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:2,98:100:99:3000,181,0 1 233395214 rs2139998 T A 725.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.94;SB=0.00;SOR=6.091;VQSLOD=8.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:57:754,57,0 1 233489499 rs7539016 A G 620.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-0.833;SB=-2.800e+02;SOR=0.538;VQSLOD=10.14;culprit=FS GT:AD:DP:GQ:PL 0/1:26,26:52:99:649,0,788 1 233489529 rs7549137 G A 830.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.363;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.909;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=1.010;SB=-3.660e+02;SOR=0.555;VQSLOD=9.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,32:76:99:859,0,1210 1 233489807 . TACTTTTA T 619.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;DP=26;ExcessHet=3.0103;FS=5.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.22;ReadPosRankSum=0.463;SB=-3.000e+02;SOR=0.083;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 0/1:19,7:26:99:657,0,1889 1 233490536 rs6143674 A AATGTCTTGGGGATAATCTG 4095.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;DB;DP=45;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=60.24;MQ0=0;MQRankSum=1.067;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=-0.852;SB=-8.240e+02;SOR=1.158;VQSLOD=0.301;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,22:45:99:4133,0,4502 1 233490543 . G A 919.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.174;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.40;MQ0=0;MQRankSum=1.257;QD=17.03;ReadPosRankSum=-2.273;SB=-2.610e+02;SOR=0.730;VQSLOD=2.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,31:54:99:948,0,543 1 233511809 . A G 722.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.946;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.38;ReadPosRankSum=0.078;SB=-3.400e+02;SOR=0.693;VQSLOD=8.26;culprit=FS GT:AD:DP:GQ:PL 0/1:27,27:54:99:751,0,760 1 233759864 rs12092901 C T 1010.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=1.624;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=-0.142;SB=-5.710e+02;SOR=0.905;VQSLOD=7.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,44:100:99:1039,0,1361 1 233759918 rs701213 T C 963.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.500;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=-0.276;SB=-5.780e+02;SOR=0.671;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:50,40:90:99:992,0,1353 1 233785786 rs4649241 A C 2534.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-1.503e+03;SOR=0.979;VQSLOD=6.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2563,193,0 1 234040742 rs12136133 A C 598.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=-1.851e+02;SOR=1.863;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:48:627,48,0 1 234040898 rs78485515 G A 537.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=11.508;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=-0.759;SB=-3.400e+02;SOR=0.034;VQSLOD=4.23;culprit=FS GT:AD:DP:GQ:PL 0/1:6,21:27:99:566,0,176 1 234041317 rs79244900 C T 1271.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.131;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.821;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=0.510;SB=-5.410e+02;SOR=0.802;VQSLOD=7.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,48:90:99:1300,0,1091 1 234041422 rs57010808 G C 4798.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.140;DB;DP=169;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4959;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.40;ReadPosRankSum=1.032;SB=-2.425e+03;SOR=1.035;VQSLOD=2.54;culprit=DP GT:AD:DP:GQ:PL 1/1:2,167:169:99:4827,316,0 1 234442376 rs674385 G A 1375.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.66;SB=-6.530e+02;SOR=1.426;VQSLOD=5.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:49:99:1404,105,0 1 234444761 rs11359233 TA T 829.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.250;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.30;RPA=13,12;RU=A;ReadPosRankSum=-1.049;SB=-2.877e+01;SOR=3.258;STR;VQSLOD=4.87;culprit=FS GT:AD:DP:GQ:PL 1/1:3,40:43:46:867,46,0 1 234454405 rs657010 A C 733.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.91;SB=0.00;SOR=5.994;VQSLOD=7.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:762,57,0 1 234458668 rs35870005 G A 425.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.696;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=0.504;SB=-2.701e+01;SOR=2.066;VQSLOD=5.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,14:23:99:454,0,228 1 234527327 . G A 705.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.288;DP=46;Dels=0.00;ExcessHet=3.0103;FS=7.723;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.34;ReadPosRankSum=0.078;SB=-1.290e+02;SOR=2.068;VQSLOD=4.62;culprit=FS GT:AD:DP:GQ:PL 0/1:20,26:46:99:734,0,572 1 234563556 rs10910434 T A 602.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.720;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.692;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=-0.241;SB=-9.000e+01;SOR=1.143;VQSLOD=6.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,21:36:99:631,0,383 1 234564864 rs71701823 GAA G 644.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;DB;DP=32;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.80;RPA=4,2;RU=A;ReadPosRankSum=0.317;SB=-3.210e+02;SOR=0.414;STR;VQSLOD=8.44;culprit=QD GT:AD:DP:GQ:PL 0/1:16,15:32:99:682,0,659 1 234565078 . G GAA 520.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQ0=0;MQRankSum=1.342;POSITIVE_TRAIN_SITE;QD=7.55;RPA=11,13;RU=A;ReadPosRankSum=1.290;SB=-2.160e+02;SOR=0.807;STR;VQSLOD=2.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,29:71:99:558,0,1125 1 234565787 rs915184 G A 676.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.909;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.141;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=-0.062;SB=-2.920e+02;SOR=0.913;VQSLOD=7.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,27:48:99:705,0,580 1 234566085 rs2236587 A G 525.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.747;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.997;HaplotypeScore=5.2599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.62;ReadPosRankSum=1.892;SB=-2.600e+02;SOR=0.471;VQSLOD=8.88;culprit=QD GT:AD:DP:GQ:PL 0/1:44,25:70:99:554,0,1184 1 234566195 rs2236588 G A 127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.534;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.72;ReadPosRankSum=-0.571;SB=-2.203e+01;SOR=0.784;VQSLOD=8.82;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:156,0,372 1 234569192 rs3754311 T C 938.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.582;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.906;HaplotypeScore=2.5975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.193;SB=-3.860e+02;SOR=0.578;VQSLOD=9.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,35:73:99:967,0,986 1 234573025 rs2273872 T C 640.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.641;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=1.139;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=0.185;SB=-2.410e+02;SOR=0.457;VQSLOD=9.70;culprit=QD GT:AD:DP:GQ:PL 0/1:41,29:70:99:669,0,1227 1 234573171 rs2273873 A C 1505.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.419;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=6.692;HaplotypeScore=3.7964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=0.383;SB=-9.530e+02;SOR=0.387;VQSLOD=7.84;culprit=FS GT:AD:DP:GQ:PL 0/1:70,59:129:99:1534,0,1848 1 234573357 rs2273875 G C 1466.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-6.000e+02;SOR=1.708;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1495,108,0 1 234582457 rs270527 C T 812.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.87;SB=-1.513e+02;SOR=2.925;VQSLOD=5.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:63:841,63,0 1 234582461 rs2203167 G A 240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=5.746;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=0.680;SB=-5.150e-01;SOR=2.760;VQSLOD=5.47;culprit=FS GT:AD:DP:GQ:PL 0/1:16,9:25:99:269,0,469 1 234582651 rs4920246 T C 1345.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.268;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=2.431;SB=-7.360e+02;SOR=0.717;VQSLOD=8.47;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:64,55:119:99:1374,0,1552 1 234584231 rs2102596 C T 1543.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.019;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.724;HaplotypeScore=2.6203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-0.052;SB=-8.320e+02;SOR=0.559;VQSLOD=9.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,64:117:99:1572,0,1489 1 234584445 rs7527374 C T 244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.050;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=0.000;SB=0.00;SOR=0.481;VQSLOD=9.76;culprit=FS GT:AD:DP:GQ:PL 0/1:13,10:23:99:273,0,453 1 234584446 rs270526 G A 376.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.114;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=0.462;SB=0.00;SOR=0.874;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:10,12:22:99:405,0,343 1 234593403 rs6693478 T C 1065.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.507;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=1.184;SB=-4.110e+02;SOR=0.631;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:20,40:60:99:1094,0,487 1 234596202 rs270511 T A 642.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.83;SB=-7.497e+01;SOR=3.611;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:51:671,51,0 1 234601456 . TA T 170.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=0.031;QD=3.48;RPA=19,18;RU=A;ReadPosRankSum=-0.074;SB=-7.400e+01;SOR=0.681;STR;VQSLOD=1.45;culprit=QD GT:AD:DP:GQ:PL 0/1:32,17:61:99:208,0,608 1 234601586 rs270504 G A 601.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.268;HaplotypeScore=5.2996;MLEAC=1;MLEAF=0.500;MQ=60.25;MQ0=0;MQRankSum=0.918;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-0.486;SB=-2.680e+02;SOR=1.460;VQSLOD=0.647;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,25:44:99:630,0,409 1 234603075 rs270503 G T 727.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.76;SB=0.00;SOR=5.994;VQSLOD=8.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:756,57,0 1 234603386 rs270502 G T 260.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.095;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=-2.277;SB=-7.000e+01;SOR=0.430;VQSLOD=9.77;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:10,12:22:99:289,0,356 1 234606644 rs10910441 A G 355.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.078;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.291;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=-0.586;SB=-3.200e+01;SOR=1.445;VQSLOD=6.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,12:23:99:384,0,288 1 234606653 rs12042313 C T 309.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-0.463;SB=-6.800e+01;SOR=0.784;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:12,13:25:99:338,0,348 1 234606998 rs3754307 A G 147.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.856;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.47;ReadPosRankSum=0.305;SB=-3.800e+01;SOR=1.609;VQSLOD=5.36;culprit=QD GT:AD:DP:GQ:PL 0/1:20,7:27:99:176,0,520 1 234614390 rs117698521 G C 131.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=1.113;SB=-3.100e+01;SOR=1.508;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:160,0,134 1 234744250 rs8722 G A 956.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.303;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-1.126;SB=-7.090e+02;SOR=0.704;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:23,42:65:99:985,0,585 1 234744413 rs4636 C A 357.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.202;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.721;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.411;SB=-1.760e+02;SOR=0.260;VQSLOD=9.61;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,13:26:99:386,0,358 1 235285740 rs4659823 C T 229.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.896;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.66;ReadPosRankSum=0.884;SB=-1.610e+02;SOR=0.569;VQSLOD=8.46;culprit=QD GT:AD:DP:GQ:PL 0/1:19,11:30:99:258,0,562 1 235301496 . CA C 641.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;DP=69;ExcessHet=3.0103;FS=4.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.52;RPA=13,12;RU=A;ReadPosRankSum=0.206;SB=-1.270e+02;SOR=1.617;STR;VQSLOD=4.59;culprit=FS GT:AD:DP:GQ:PL 0/1:23,38:69:99:679,0,456 1 235324047 rs66533903 A C 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.279;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.540;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.515;SB=-9.700e+01;SOR=1.085;VQSLOD=7.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,12:26:99:375,0,477 1 235324298 rs2295815 T C 1827.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.112;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=1.376;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=-1.585;SB=-1.087e+03;SOR=0.829;VQSLOD=7.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,70:131:99:1856,0,1623 1 235324545 rs66929873 T A 1115.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.618;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=0.049;SB=-6.030e+02;SOR=0.745;VQSLOD=8.18;culprit=FS GT:AD:DP:GQ:PL 0/1:58,46:104:99:1144,0,1565 1 235338377 rs12731779 G A 432.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.39;SB=0.00;SOR=5.136;VQSLOD=8.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:461,36,0 1 235357303 rs66714638 A ATG 2327.73 PASS AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-1.805e+02;SOR=4.514;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:2365,120,0 1 235357314 rs35180803 AT A 2352.73 PASS AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.35;RPA=2,1;RU=T;SB=-2.621e+02;SOR=3.872;STR;VQSLOD=2.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:54:99:2390,160,0 1 235357543 rs10802438 A G 1709.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-7.697e+01;SOR=4.849;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1738,132,0 1 235383188 rs4659654 A G 1093.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-5.920e+02;SOR=0.927;VQSLOD=6.95;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,36:36:84:1122,84,0 1 235392546 rs12731746 T C 405.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;SB=-4.376e+01;SOR=3.611;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:434,33,0 1 235394278 rs12753166 G T 420.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.26;SB=0.00;SOR=5.136;VQSLOD=7.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:449,36,0 1 235394541 rs7518225 A C 1513.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.52;SB=-6.510e+02;SOR=1.371;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1542,111,0 1 235397937 rs35818300 GCA G 365.74 PASS AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;RPA=6,5;RU=CA;SB=-4.776e+01;SOR=3.056;STR;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,9:12:27:403,27,0 1 235490391 rs3840452 CA C 1497.73 PASS AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;RPA=2,1;RU=A;SB=-9.297e+01;SOR=4.921;STR;VQSLOD=5.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:99:1535,108,0 1 235505313 . A AT 984.73 PASS AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.90;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.96;RPA=7,8;RU=T;SB=-2.800e+02;SOR=2.049;STR;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:36:99:1022,102,0 1 235564850 rs199888401 G A 577.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=3.435;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.50;ReadPosRankSum=-0.337;SB=-3.020e+02;SOR=1.109;VQSLOD=5.27;culprit=QD GT:AD:DP:GQ:PL 0/1:43,25:68:99:606,0,1062 1 235594182 rs2291687 A G 688.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.80;ReadPosRankSum=0.135;SB=-2.450e+02;SOR=0.735;VQSLOD=10.33;culprit=FS GT:AD:DP:GQ:PL 0/1:15,26:41:99:717,0,367 1 235594250 rs2291688 A G 203.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.347;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-0.746;SB=0.00;SOR=0.693;VQSLOD=10.38;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:232,0,226 1 235597252 rs12405889 T G 764.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.519;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.596;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=0.098;SB=-1.370e+02;SOR=1.136;VQSLOD=6.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,28:41:99:793,0,347 1 235598973 rs2055127 C T 386.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.664;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=-0.416;SB=-8.700e+01;SOR=1.938;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 0/1:19,15:34:99:415,0,503 1 235600053 rs368118144 A AC 463.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.145;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQ0=0;MQRankSum=0.919;QD=23.19;ReadPosRankSum=-0.888;SB=-3.677e+01;SOR=0.368;VQSLOD=2.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,12:21:99:501,0,230 1 235601958 rs3819974 G T 261.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.223;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=-0.352;SB=-1.010e+02;SOR=0.446;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:6,11:17:99:290,0,166 1 235612320 rs704705 C T 537.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.908;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=4.402;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=1.104;SB=-1.905e+01;SOR=1.802;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 0/1:23,18:41:99:566,0,682 1 235628908 rs1305556 G A 278.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.88;SB=-1.135e+02;SOR=1.609;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:307,24,0 1 235647631 rs291387 G T 2454.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-3.550e+02;SOR=3.797;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2483,199,0 1 235652513 rs291396 T C 3024.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.54;SB=-1.652e+03;SOR=1.244;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3053,223,0 1 235652775 rs11299116 CT C 365.74 PASS AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;RPA=3,2;RU=T;SB=0.00;SOR=4.804;STR;VQSLOD=8.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:11:30:403,30,0 1 235667690 rs291348 A G 465.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-1.205e+02;SOR=2.448;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:494,36,0 1 235715523 rs14326 A G 2811.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.878;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.91;ReadPosRankSum=0.295;SB=-1.033e+03;SOR=0.831;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:1,93:94:99:2840,173,0 1 235715556 rs423026 C G 2289.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.747;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.25;ReadPosRankSum=1.733;SB=-5.760e+02;SOR=1.528;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:1,70:71:99:2318,138,0 1 235715601 rs400948 A G 1232.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.17;SB=-4.176e+01;SOR=5.610;VQSLOD=2.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:96:1261,96,0 1 235715617 rs452950 A C 831.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.66;SB=0.00;SOR=6.439;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:72:860,72,0 1 235715661 rs387492 A G 380.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=0.00;SOR=4.804;VQSLOD=8.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:409,30,0 1 235747005 rs2774335 C T 546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.373;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=5.528;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=-0.566;SB=-1.453e+02;SOR=0.109;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:9,20:29:99:575,0,292 1 235747154 rs2774336 A G 672.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.033;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-0.555;SB=-3.340e+02;SOR=0.983;VQSLOD=8.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,25:57:99:701,0,835 1 235878431 rs373976861 A AGTT 519.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.62;RPA=8,9;RU=GTT;ReadPosRankSum=0.891;SB=-4.800e+01;SOR=0.892;STR;VQSLOD=7.60;culprit=FS GT:AD:DP:GQ:PL 0/1:10,12:22:99:557,0,450 1 235926057 rs371248013 T C 1823.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.996;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.41;ReadPosRankSum=0.211;SB=-8.120e+02;SOR=0.758;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 0/1:68,68:136:99:1852,0,1775 1 235940702 . A C 425.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.151;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.51;ReadPosRankSum=0.558;SB=0.00;SOR=0.963;VQSLOD=8.60;culprit=FS GT:AD:DP:GQ:PL 0/1:10,13:23:99:454,0,318 1 235945480 rs11300413 CT C 48.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQ0=0;MQRankSum=1.335;QD=4.43;RPA=15,14;RU=T;ReadPosRankSum=-1.068;SB=0.00;SOR=0.551;STR;VQSLOD=1.68;culprit=QD GT:AD:DP:GQ:PL 0/1:6,5:14:86:86,0,125 1 236142565 rs1536132 T C 383.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.163;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.645;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-0.197;SB=-1.460e+02;SOR=0.148;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:13,16:29:99:412,0,404 1 236154012 rs1041111 C T 546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.131;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.87;ReadPosRankSum=-0.350;SB=0.00;SOR=1.609;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:8,17:25:99:575,0,235 1 236157277 rs16833075 T G 1046.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.081;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=1.904;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=0.239;SB=-2.440e+02;SOR=0.928;VQSLOD=7.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,40:99:99:1075,0,1608 1 236175327 rs3738531 C A 1367.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.797;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=-0.789;SB=-8.990e+02;SOR=0.716;VQSLOD=9.20;culprit=FS GT:AD:DP:GQ:PL 0/1:41,56:97:99:1396,0,1071 1 236175339 rs2031487 T C 2830.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.80;SB=-1.905e+03;SOR=0.714;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:2859,205,0 1 236180580 rs3768081 C G 1675.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6515;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-6.260e+02;SOR=1.919;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:57:99:1704,126,0 1 236187365 rs3738533 T C 1651.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.130;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=3.201;HaplotypeScore=3.6172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.973;SB=-7.250e+02;SOR=0.461;VQSLOD=8.60;culprit=DP GT:AD:DP:GQ:PL 0/1:77,62:139:99:1680,0,2108 1 236192782 rs3818238 G A 200.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.473;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=0.317;SB=-3.000e+01;SOR=0.743;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 0/1:11,7:18:99:229,0,295 1 236208688 rs10733131 A G 593.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=0.00;SOR=5.549;VQSLOD=8.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:622,45,0 1 236208689 rs10733132 T A 556.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.86;SB=0.00;SOR=5.549;VQSLOD=7.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:585,45,0 1 236208773 rs10733133 C T 2055.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-8.410e+02;SOR=1.712;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2084,154,0 1 236209024 rs3768088 C G 1021.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.96;SB=-2.041e+02;SOR=3.056;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:81:1050,81,0 1 236209081 rs3768089 G A 481.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.05;SB=0.00;SOR=5.283;VQSLOD=8.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:510,39,0 1 236305885 rs7522547 G A 251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.807;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.98;ReadPosRankSum=0.908;SB=-4.176e+01;SOR=0.446;VQSLOD=9.88;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:280,0,141 1 236381825 rs1055851 G C 190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.868;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.276;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=-0.837;SB=-1.040e+02;SOR=0.654;VQSLOD=5.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,7:13:99:219,0,174 1 236384022 . A ATTT 574.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;DP=27;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.11;RPA=9,12;RU=T;ReadPosRankSum=-0.952;SB=-1.764e+00;SOR=1.981;STR;VQSLOD=5.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,14:27:99:612,0,483 1 236384278 rs1405624 G C 1093.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.326;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=0.765;SB=-1.190e+02;SOR=0.779;VQSLOD=8.71;culprit=FS GT:AD:DP:GQ:PL 0/1:33,40:73:99:1122,0,901 1 236385116 rs2463190 C T 220.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=1.200;SB=0.00;SOR=1.802;VQSLOD=8.69;culprit=FS GT:AD:DP:GQ:PL 0/1:3,8:11:91:249,0,91 1 236385165 rs2463189 G C 434.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.927;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=0.906;SB=-3.777e+01;SOR=0.138;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:12,16:28:99:463,0,401 1 236385360 rs2477587 C T 750.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.115;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-0.768;SB=-3.670e+02;SOR=0.483;VQSLOD=10.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,37:62:99:779,0,618 1 236385379 rs2463188 A G 669.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.346;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=3.172;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=0.320;SB=-9.900e+01;SOR=1.314;VQSLOD=7.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,25:45:99:698,0,519 1 236399442 rs1254194 G T 152.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=0.153;SB=0.00;SOR=0.859;VQSLOD=9.90;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:181,0,166 1 236413147 rs1726639 T C 450.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.60;ReadPosRankSum=1.297;SB=-1.870e+02;SOR=0.722;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 0/1:6,17:23:99:479,0,142 1 236413230 rs2477599 T A 323.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.30;ReadPosRankSum=0.737;SB=-1.690e+02;SOR=0.657;VQSLOD=9.22;culprit=QD GT:AD:DP:GQ:PL 0/1:24,15:39:99:352,0,653 1 236413282 rs2056713 G A 476.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.444;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-1.401;SB=-2.360e+02;SOR=1.402;VQSLOD=6.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,20:34:99:505,0,304 1 236413362 rs2477598 C T 161.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-0.618;SB=0.00;SOR=0.693;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:190,0,198 1 236413384 rs2477597 T C 186.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=-2.450;SB=0.00;SOR=1.085;VQSLOD=9.11;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,6:10:99:215,0,114 1 236415347 rs1749589 T C 1200.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.602;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.188;SB=-7.080e+02;SOR=0.756;VQSLOD=8.26;culprit=FS GT:AD:DP:GQ:PL 0/1:41,50:91:99:1229,0,1019 1 236415444 rs1618510 G A 375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.959;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-0.049;SB=-3.200e+01;SOR=0.622;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:14,13:28:99:404,0,410 1 236416921 rs2812465 C T 274.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.714;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=0.652;SB=-3.200e+01;SOR=0.941;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:13,10:23:99:303,0,405 1 236433135 rs3834089 AT A 1278.73 PASS AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.76;SB=-4.680e+02;SOR=1.460;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:87:1316,87,0 1 236444879 rs369401502 G GGCCCGGCCCT 954.75 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;RPA=2,3;RU=GCCCGGCCCT;SB=-3.725e+02;SOR=1.179;STR;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,8:10:24:992,24,0 1 236444973 rs1269025 C T 247.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=1.778;HaplotypeScore=2.1623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=-0.400;SB=-1.290e+02;SOR=0.368;VQSLOD=9.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,10:18:99:276,0,238 1 236557771 rs966365 G A 3740.77 PASS AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.92;SB=-2.447e+03;SOR=0.723;VQSLOD=4.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,134:134:99:3769,274,0 1 236557804 rs60808129 G A 1054.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.726;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.02;ReadPosRankSum=-1.270;SB=-5.020e+02;SOR=0.844;VQSLOD=6.66;culprit=QD GT:AD:DP:GQ:PL 0/1:74,43:117:99:1083,0,2169 1 236557928 rs966364 G A 1217.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.79;SB=-1.543e+02;SOR=3.737;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:93:1246,93,0 1 236572389 rs659901 G A 240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;DB;DP=33;Dels=0.03;ExcessHet=3.0103;FS=8.609;HaplotypeScore=10.9941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.52;ReadPosRankSum=1.132;SB=-1.352e-01;SOR=2.941;VQSLOD=5.03;culprit=QD GT:AD:DP:GQ:PL 0/1:21,11:32:99:269,0,501 1 236572475 rs669710 A G 1324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.959;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=3.865;HaplotypeScore=5.5660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=-1.442;SB=-6.320e+02;SOR=1.097;VQSLOD=7.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,50:95:99:1353,0,982 1 236590497 rs1759388 C G 423.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.382;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=-0.523;SB=-1.050e+02;SOR=0.627;VQSLOD=10.18;culprit=FS GT:AD:DP:GQ:PL 0/1:17,16:33:99:452,0,505 1 236590563 rs1778861 C T 713.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=-0.126;SB=-3.570e+02;SOR=0.710;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:37,30:67:99:742,0,908 1 236590629 rs636378 C T 861.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.857;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=0.899;SB=-4.300e+02;SOR=0.841;VQSLOD=7.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,35:78:99:890,0,1052 1 236590659 rs636048 G C 741.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.183;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.937;HaplotypeScore=1.9466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.807;SB=-4.340e+02;SOR=0.542;VQSLOD=9.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,31:68:99:770,0,973 1 236590816 rs635487 T G 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.838;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.187;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-1.648;SB=-1.130e+02;SOR=0.293;VQSLOD=9.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,9:15:99:247,0,162 1 236700673 rs62670060 GAGC G 310.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.07;ReadPosRankSum=2.450;SB=0.00;SOR=1.085;VQSLOD=7.29;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,6:10:99:348,0,228 1 236700807 rs1126407 T A 782.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.558;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=3.312;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=-1.357;SB=-3.780e+02;SOR=0.366;VQSLOD=9.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,32:78:99:811,0,1229 1 236700823 rs1041934 T C 810.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.011;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=2.965;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=-0.928;SB=-4.790e+02;SOR=0.411;VQSLOD=9.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,35:86:99:839,0,1284 1 236700857 rs1041935 C T 781.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.78;ReadPosRankSum=0.513;SB=-5.330e+02;SOR=0.608;VQSLOD=8.73;culprit=QD GT:AD:DP:GQ:PL 0/1:54,35:89:99:810,0,1300 1 236700982 rs2737706 T C 341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.051;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=0.904;SB=-2.901e+01;SOR=1.179;VQSLOD=9.29;culprit=FS GT:AD:DP:GQ:PL 0/1:23,12:35:99:370,0,657 1 236702209 rs1041936 C T 223.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=-0.675;SB=-4.176e+01;SOR=0.223;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:252,0,242 1 236702210 rs1041937 A G 246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.814;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=-0.204;SB=-4.276e+01;SOR=0.180;VQSLOD=8.90;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:275,0,264 1 236702374 rs2472126 G A 472.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.847;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.463;SB=-8.300e+01;SOR=0.859;VQSLOD=10.11;culprit=FS GT:AD:DP:GQ:PL 0/1:22,18:40:99:501,0,587 1 236702447 rs12744425 T G 275.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-0.264;SB=-6.500e+01;SOR=0.892;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:12,10:22:99:304,0,312 1 236702450 rs12744427 T C 255.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.483;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=-0.532;SB=-6.700e+01;SOR=0.582;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:10,9:19:99:284,0,279 1 236702475 rs11807205 A G 114.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.152;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=-0.307;SB=-6.901e+01;SOR=0.269;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:143,0,169 1 236703767 rs2758994 C T 262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.657;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=-1.337;SB=-4.176e+01;SOR=0.269;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:291,0,265 1 236703832 rs34818366 CG C 733.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.502;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQ0=0;MQRankSum=1.674;POSITIVE_TRAIN_SITE;QD=16.31;RPA=8,7;RU=G;ReadPosRankSum=0.851;SB=-1.530e+02;SOR=0.839;STR;VQSLOD=3.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,26:46:99:771,0,531 1 236706352 rs2758174 A C 443.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.967;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=15.653;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-0.565;SB=-6.829e-02;SOR=4.047;VQSLOD=3.47;culprit=FS GT:AD:DP:GQ:PL 0/1:19,14:33:99:472,0,479 1 236706371 rs2758175 A G 268.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.294;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=8.671;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=0.000;SB=-1.352e-01;SOR=2.964;VQSLOD=5.31;culprit=FS GT:AD:DP:GQ:PL 0/1:18,9:27:99:297,0,459 1 236706671 rs2243530 T A 322.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.912;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=0.000;SB=-4.276e+01;SOR=0.091;VQSLOD=8.90;culprit=SOR GT:AD:DP:GQ:PL 0/1:20,13:33:99:351,0,604 1 236706780 rs2243527 C T 1557.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.610;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=10.349;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=2.021;SB=-3.060e+02;SOR=1.542;VQSLOD=3.42;culprit=FS GT:AD:DP:GQ:PL 0/1:94,56:150:99:1586,0,2436 1 236706862 rs2243525 G C 2186.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;DB;DP=206;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=0.303;SB=-1.483e+03;SOR=0.669;VQSLOD=6.21;culprit=DP GT:AD:DP:GQ:PL 0/1:116,90:206:99:2215,0,2879 1 236707007 rs2799410 C T 749.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.817;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=0.650;SB=-2.830e+02;SOR=0.843;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 0/1:52,31:83:99:778,0,1412 1 236707036 rs2794786 A T 586.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.603;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=5.684;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=1.067;SB=-1.240e+02;SOR=1.532;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 0/1:42,24:66:99:615,0,1126 1 236707045 rs2799409 C T 567.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.058;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=4.019;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=1.151;SB=-1.300e+02;SOR=1.284;VQSLOD=6.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,22:60:99:596,0,965 1 236708224 rs2244063 A C 1420.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.548;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=3.054;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=-0.804;SB=-6.790e+02;SOR=0.405;VQSLOD=9.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,54:91:99:1449,0,964 1 236708316 rs2758181 A G 395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=-0.873;SB=-1.215e+02;SOR=0.507;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:8,15:23:99:424,0,225 1 236708357 rs375024507 C CCCTT 396.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.05;RPA=1,2;RU=CCTT;ReadPosRankSum=-0.004;SB=0.00;SOR=1.270;STR;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:15:99:434,0,210 1 236711297 rs2254823 A T 208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.642;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=-0.255;SB=-3.400e+01;SOR=0.293;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:237,0,219 1 236711323 rs15701 T C 261.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.878;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=1.113;SB=-7.100e+01;SOR=0.392;VQSLOD=10.08;culprit=FS GT:AD:DP:GQ:PL 0/1:14,10:24:99:290,0,379 1 236711586 rs1160 G A 604.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.492;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=0.693;SB=-1.630e+02;SOR=0.798;VQSLOD=10.11;culprit=FS GT:AD:DP:GQ:PL 0/1:24,22:46:99:633,0,693 1 236714064 rs6989 A C 434.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.604;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-1.248;SB=-8.600e+01;SOR=1.179;VQSLOD=7.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,15:32:99:463,0,465 1 236714292 . T TAA 262.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=-1.099;QD=8.76;RPA=18,20;RU=A;ReadPosRankSum=0.352;SB=-9.000e+01;SOR=0.602;STR;VQSLOD=2.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,16:44:99:300,0,335 1 236714335 rs2254487 C T 262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.318;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.317;SB=-2.402e+01;SOR=1.781;VQSLOD=6.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,10:21:99:291,0,293 1 236714384 rs2254483 G A 123.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=0.000;SB=0.00;SOR=0.551;VQSLOD=9.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,5:11:99:152,0,206 1 236716686 rs1475133 G A 313.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.148;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-0.520;SB=-3.300e+01;SOR=0.693;VQSLOD=9.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,12:24:99:342,0,378 1 236716741 rs1475132 G A 555.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.656;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=1.449;SB=-6.600e+01;SOR=0.504;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:30,18:48:99:584,0,863 1 236716959 rs2275685 C T 1846.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.065;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=1.354;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=0.382;SB=-1.035e+03;SOR=0.556;VQSLOD=8.75;culprit=DP GT:AD:DP:GQ:PL 0/1:70,71:141:99:1875,0,1724 1 236717104 rs2275686 A G 528.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.686;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=3.869;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-0.483;SB=-6.100e+01;SOR=1.708;VQSLOD=5.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,18:38:99:557,0,506 1 236717926 rs2275687 T C 695.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.023;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=3.943;HaplotypeScore=7.3254;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=1.119;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-0.863;SB=-3.590e+02;SOR=1.093;VQSLOD=0.447;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,28:52:99:724,0,715 1 236718524 rs6668848 G C 333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.325;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.136;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=0.441;SB=-7.897e+01;SOR=0.047;VQSLOD=8.07;culprit=SOR GT:AD:DP:GQ:PL 0/1:9,14:23:99:362,0,298 1 236718561 rs6668926 G A 391.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.610;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.645;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=0.658;SB=-1.361e+02;SOR=0.148;VQSLOD=10.30;culprit=FS GT:AD:DP:GQ:PL 0/1:13,16:29:99:420,0,411 1 236718620 rs1126627 T C 758.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.419;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-0.556;SB=-2.300e+02;SOR=0.746;VQSLOD=10.01;culprit=FS GT:AD:DP:GQ:PL 0/1:25,26:51:99:787,0,663 1 236719135 rs1885532 T C 1552.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.45;SB=-6.510e+02;SOR=1.702;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1581,114,0 1 236719193 . A G 707.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;DP=77;Dels=0.03;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.44;ReadPosRankSum=0.433;SB=-4.590e+02;SOR=0.779;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 0/1:45,30:75:99:736,0,1119 1 236719259 rs1885534 G A 745.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.820;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=-0.009;SB=-4.550e+02;SOR=0.698;VQSLOD=8.33;culprit=FS GT:AD:DP:GQ:PL 0/1:51,32:83:99:774,0,1282 1 236719688 rs1407518 A G 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.766;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=0.234;SB=-2.801e+01;SOR=1.179;VQSLOD=9.11;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:246,0,242 1 236720761 rs2799404 T C 270.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.541;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.356;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=-1.148;SB=-1.321e+01;SOR=1.981;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 0/1:19,10:29:99:299,0,608 1 236721610 rs2275688 G A 536.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.938;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-0.399;SB=-2.180e+02;SOR=0.941;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:33,21:54:99:565,0,821 1 236721660 rs2275689 T C 779.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.376;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=3.331;HaplotypeScore=2.7059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=-0.666;SB=-3.920e+02;SOR=1.037;VQSLOD=7.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,29:66:99:808,0,945 1 236721731 rs819431 T C 1886.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-1.095e+03;SOR=0.724;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1915,147,0 1 236722182 rs819432 A T 1133.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.64;SB=-2.620e+02;SOR=2.774;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:87:1162,87,0 1 236722489 rs2146122 C T 270.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=1.768;SB=-3.302e+01;SOR=0.693;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:299,0,265 1 236723177 rs10754576 G A 686.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.730;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-1.843;SB=-2.260e+02;SOR=0.683;VQSLOD=8.95;culprit=FS GT:AD:DP:GQ:PL 0/1:32,25:57:99:715,0,905 1 236723178 rs10754577 C A 688.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.638;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=-1.883;SB=-2.230e+02;SOR=0.683;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:32,25:57:99:717,0,902 1 236724504 rs1077439 G A 295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.464;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.45;ReadPosRankSum=-1.884;SB=-6.200e+01;SOR=0.489;VQSLOD=9.02;culprit=QD GT:AD:DP:GQ:PL 0/1:24,11:35:99:324,0,802 1 236724605 rs1077438 G T 601.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.897;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=3.421;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=-0.155;SB=-2.620e+02;SOR=1.255;VQSLOD=7.00;culprit=QD GT:AD:DP:GQ:PL 0/1:45,26:71:99:630,0,1130 1 236724715 rs1077437 T G 564.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.316;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=0.558;SB=-1.370e+02;SOR=0.375;VQSLOD=10.13;culprit=FS GT:AD:DP:GQ:PL 0/1:24,21:45:99:593,0,685 1 236724766 rs1077436 C T 190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.342;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.430;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.67;ReadPosRankSum=-0.495;SB=-7.002e+01;SOR=0.223;VQSLOD=9.25;culprit=QD GT:AD:DP:GQ:PL 0/1:12,10:22:99:219,0,390 1 236729458 rs2564744 G C 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=2.017;SB=0.00;SOR=0.693;VQSLOD=8.83;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,5:10:99:171,0,174 1 236729867 rs2758172 C T 571.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.841;HaplotypeScore=3.6745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=-0.903;SB=-1.120e+02;SOR=1.316;VQSLOD=6.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,22:53:99:600,0,774 1 236732145 rs2794779 C G 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.80;ReadPosRankSum=-1.200;SB=0.00;SOR=1.270;VQSLOD=10.14;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:246,0,131 1 236732198 rs12135604 C A 190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=8.822;HaplotypeScore=4.7934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.95;ReadPosRankSum=2.733;SB=-2.657e-01;SOR=3.056;VQSLOD=3.04;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:16,8:24:99:219,0,354 1 236732199 rs66482221 A AC 73.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.540;DB;DP=24;ExcessHet=3.0103;FS=9.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.07;ReadPosRankSum=2.628;SB=-1.695e-01;SOR=3.426;VQSLOD=3.80;culprit=QD GT:AD:DP:GQ:PL 0/1:15,9:24:99:111,0,470 1 236735939 rs2853602 T C 1866.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=2.355;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=0.237;SB=-7.900e+02;SOR=0.483;VQSLOD=9.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,68:127:99:1895,0,1592 1 236739416 rs2115740 C T 497.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-0.423;SB=-2.460e+02;SOR=0.659;VQSLOD=10.32;culprit=FS GT:AD:DP:GQ:PL 0/1:14,23:38:99:526,0,351 1 236740039 rs6658793 G C 279.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.403;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.897;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-0.132;SB=-6.400e+01;SOR=1.329;VQSLOD=7.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,10:22:99:308,0,356 1 236744424 . A AT 203.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;RPA=9,10;RU=T;ReadPosRankSum=1.203;SB=-6.097e+01;SOR=0.307;STR;VQSLOD=9.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,10:14:71:241,0,71 1 236744712 rs4518892 C A 197.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.637;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-1.125;SB=-1.765e+00;SOR=1.270;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:226,0,315 1 236746011 rs75273134 C T 553.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.675;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=-1.592;SB=-7.101e+01;SOR=1.179;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:13,19:32:99:582,0,329 1 236746275 rs2794769 G C 1303.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.754;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=4.104;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=-0.310;SB=-5.330e+02;SOR=1.151;VQSLOD=7.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,45:87:99:1332,0,1062 1 236746443 rs2794768 C T 564.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=0.376;SB=-3.110e+02;SOR=0.657;VQSLOD=9.92;culprit=FS GT:AD:DP:GQ:PL 0/1:21,23:44:99:593,0,559 1 236748505 rs1006456 T C 867.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.408;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.977;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-1.494;SB=-4.600e+02;SOR=1.022;VQSLOD=7.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,36:66:99:896,0,632 1 236749022 rs10925166 G A 283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.840;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.27;ReadPosRankSum=-1.136;SB=-4.076e+01;SOR=0.693;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:4,10:14:99:312,0,127 1 236749026 rs10925167 T A 295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.845;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.13;ReadPosRankSum=-1.277;SB=-4.076e+01;SOR=0.693;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:4,10:14:99:324,0,117 1 236749649 rs2794763 T C 508.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.223;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.177;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=0.729;SB=-3.480e+02;SOR=0.474;VQSLOD=9.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,21:43:99:537,0,555 1 236749817 rs2799420 C T 158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.792;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.56;ReadPosRankSum=-1.045;SB=-2.501e+01;SOR=1.688;VQSLOD=5.07;culprit=QD GT:AD:DP:GQ:PL 0/1:14,7:21:99:187,0,340 1 236755170 rs2794760 G T 182.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=2.362;SB=-3.200e+01;SOR=1.402;VQSLOD=8.68;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,7:11:99:211,0,132 1 236755427 rs2794759 A G 439.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.048;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.785;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=-0.442;SB=-9.900e+01;SOR=1.565;VQSLOD=6.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,16:28:99:468,0,301 1 236755814 rs2794757 G A 72.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.06;ReadPosRankSum=-0.513;SB=-3.000e+01;SOR=1.022;VQSLOD=8.14;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:99:101,0,175 1 236755837 rs2564739 C T 87.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.31;ReadPosRankSum=0.651;SB=-3.000e+01;SOR=0.551;VQSLOD=8.56;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:13:99:116,0,212 1 236757200 rs2564738 A G 127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.236;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=4.523;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.52;ReadPosRankSum=-0.805;SB=-4.276e+01;SOR=0.061;VQSLOD=8.85;culprit=QD GT:AD:DP:GQ:PL 0/1:11,6:17:99:156,0,376 1 236757229 rs2794754 G A 231.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.348;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.960;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.24;ReadPosRankSum=1.037;SB=-2.004e+01;SOR=1.329;VQSLOD=6.26;culprit=QD GT:AD:DP:GQ:PL 0/1:22,10:32:99:260,0,663 1 236757507 rs2794753 A G 211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.513;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=-0.920;SB=0.00;SOR=1.270;VQSLOD=10.14;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:240,0,118 1 236758887 rs2794751 T C 701.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=6.369;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=-0.452;SB=-3.800e+02;SOR=0.897;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 0/1:18,27:45:99:730,0,499 1 236759060 rs2794750 T C 457.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.140;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.256;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=-0.528;SB=-1.600e+02;SOR=1.609;VQSLOD=6.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,16:32:99:486,0,521 1 236760032 . A G 485.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.192;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.13;ReadPosRankSum=-1.232;SB=0.00;SOR=1.508;VQSLOD=8.04;culprit=FS GT:AD:DP:GQ:PL 0/1:7,14:21:99:514,0,178 1 236760368 rs2564737 T C 133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.968;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.55;ReadPosRankSum=1.743;SB=0.00;SOR=0.473;VQSLOD=8.25;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:162,0,270 1 236767176 . C G 349.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.914;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=18.0745;MLEAC=1;MLEAF=0.500;MQ=60.32;MQ0=0;MQRankSum=1.255;QD=10.29;ReadPosRankSum=0.018;SB=-5.600e+01;SOR=0.202;VQSLOD=1.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,14:34:99:378,0,637 1 236767178 rs5781902 AG A 394.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;DB;DP=34;ExcessHet=3.0103;FS=2.026;MLEAC=1;MLEAF=0.500;MQ=60.32;MQ0=0;MQRankSum=1.255;POSITIVE_TRAIN_SITE;QD=11.61;RPA=4,3;RU=G;ReadPosRankSum=-0.053;SB=-1.060e+02;SOR=0.202;STR;VQSLOD=0.108;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,14:34:99:432,0,661 1 236767330 rs10802551 A G 809.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.030;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=3.191;HaplotypeScore=2.5310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=-0.343;SB=-5.220e+02;SOR=0.383;VQSLOD=9.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,32:75:99:838,0,1155 1 236882110 rs1341865 G A 1814.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6297;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-5.860e+02;SOR=2.107;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:58:99:1843,138,0 1 236882303 rs1341864 T C 1228.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-3.520e+02;SOR=2.476;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1257,99,0 1 236883240 rs1768053 T C 1176.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.42;SB=-4.410e+02;SOR=1.788;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:87:1205,87,0 1 236883421 rs1341863 C T 1340.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.52;SB=-7.000e+02;SOR=0.902;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1369,102,0 1 236883564 rs1341862 G A 676.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=-1.801e+02;SOR=2.200;VQSLOD=7.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:705,54,0 1 236890781 rs1768056 A G 647.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-1.633e+02;SOR=2.636;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:676,54,0 1 236894647 rs819640 G A 2395.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.86;SB=-1.040e+03;SOR=1.554;VQSLOD=5.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2424,175,0 1 236897633 rs707203 A G 1679.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=-3.910e+02;SOR=2.701;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1708,123,0 1 236899042 rs2288600 G A 1557.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.696;DB;DP=178;Dels=0.00;ExcessHet=3.0103;FS=4.557;HaplotypeScore=3.1490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.80;ReadPosRankSum=0.114;SB=-9.320e+02;SOR=0.766;VQSLOD=5.76;culprit=DP GT:AD:DP:GQ:PL 0/1:111,66:178:99:1586,0,2760 1 236900598 . CAT C 379.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;DP=26;ExcessHet=3.0103;FS=4.706;MLEAC=1;MLEAF=0.500;MQ=60.42;MQ0=0;MQRankSum=0.962;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.08;RPA=10,9;RU=AT;ReadPosRankSum=-0.107;SB=-1.420e+02;SOR=0.148;STR;VQSLOD=0.490;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,12:26:99:417,0,285 1 236914610 rs3738545 G C 333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.86;ReadPosRankSum=0.597;SB=0.00;SOR=1.244;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:6,10:16:99:362,0,197 1 236924506 rs2282366 A G 436.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.745;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=4.456;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.24;ReadPosRankSum=-0.211;SB=-4.200e+01;SOR=1.615;VQSLOD=5.24;culprit=QD GT:AD:DP:GQ:PL 0/1:51,19:70:99:465,0,1607 1 236925844 rs12063382 G A 1543.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.552;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=-0.035;SB=-9.100e+02;SOR=0.714;VQSLOD=7.97;culprit=FS GT:AD:DP:GQ:PL 0/1:90,60:150:99:1572,0,2307 1 236958532 rs28372871 G T 540.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.139;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.494;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-0.299;SB=-1.700e+02;SOR=0.446;VQSLOD=9.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,22:40:99:569,0,548 1 236978992 rs35668201 T TTCTG 615.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.99;ReadPosRankSum=-0.600;SB=-1.330e+02;SOR=0.593;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:11,10:21:99:653,0,656 1 236983532 rs61831809 A G 253.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.259;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=4.752;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=-1.355;SB=-5.900e+01;SOR=2.055;VQSLOD=5.56;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:282,0,240 1 236983534 rs61831810 C G 253.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.818;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=7.701;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-1.593;SB=-6.100e+01;SOR=2.272;VQSLOD=5.34;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:282,0,251 1 236983594 rs61831811 A G 97.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.093;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=11.139;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.52;ReadPosRankSum=1.702;SB=-3.436e-02;SOR=3.234;VQSLOD=4.27;culprit=QD GT:AD:DP:GQ:PL 0/1:11,4:15:99:126,0,323 1 237001926 rs3820568 A G 666.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.365;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=0.767;SB=-3.770e+02;SOR=0.432;VQSLOD=9.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,28:51:99:695,0,519 1 237002032 rs55748381 A C 306.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.920;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.91;ReadPosRankSum=1.176;SB=0.00;SOR=1.329;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:80:335,0,80 1 237013550 rs146375090 AT A 384.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.373;SB=-3.477e+01;SOR=0.283;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:13,16:29:99:422,0,530 1 237013553 rs200399202 T A 491.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.363;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.96;ReadPosRankSum=0.307;SB=-4.076e+01;SOR=0.283;VQSLOD=8.20;culprit=FS GT:AD:DP:GQ:PL 0/1:13,16:29:99:520,0,372 1 237023333 . T C 53.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-0.802;SB=0.00;SOR=0.148;VQSLOD=7.69;culprit=QD GT:AD:DP:GQ:PL 0/1:9,3:12:82:82,0,311 1 237037998 rs150727404 CT C 949.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DB;DP=96;ExcessHet=3.0103;FS=0.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.00;RPA=10,9;RU=T;ReadPosRankSum=-0.997;SB=-2.370e+02;SOR=0.525;STR;VQSLOD=9.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,51:96:99:987,0,922 1 237038161 rs1770449 T C 2147.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.339;DB;DP=185;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-1.114;SB=-1.138e+03;SOR=0.720;VQSLOD=7.24;culprit=DP GT:AD:DP:GQ:PL 0/1:95,89:185:99:2176,0,2335 1 237048562 rs2275566 G A 388.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.745;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.031;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=-0.666;SB=-8.601e+01;SOR=0.352;VQSLOD=10.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,15:25:99:417,0,291 1 237049879 rs12065382 C T 636.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.318;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=-1.537;SB=-1.600e+02;SOR=0.880;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 0/1:21,24:45:99:665,0,572 1 237054569 rs2229276 A G 382.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.749;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=5.039;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.51;ReadPosRankSum=-2.016;SB=-6.900e+01;SOR=1.773;VQSLOD=5.50;culprit=QD GT:AD:DP:GQ:PL 0/1:29,16:45:99:411,0,811 1 237057608 rs2297965 G A 2454.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.359;DB;DP=171;Dels=0.00;ExcessHet=3.0103;FS=0.710;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=1.326;SB=-5.910e+02;SOR=0.601;VQSLOD=7.65;culprit=DP GT:AD:DP:GQ:PL 0/1:84,87:171:99:2483,0,2187 1 237058744 rs12070777 C A 1262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.870;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=7.721;HaplotypeScore=9.7874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=1.232;SB=-4.290e+02;SOR=1.436;VQSLOD=4.68;culprit=FS GT:AD:DP:GQ:PL 0/1:66,47:113:99:1291,0,1701 1 237058828 rs1131449 C T 1242.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=3.685;HaplotypeScore=4.4704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=1.446;SB=-5.060e+02;SOR=1.120;VQSLOD=7.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,49:113:99:1271,0,1610 1 237060433 rs3820571 G T 937.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.383;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=1.834;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=-0.879;SB=-4.610e+02;SOR=0.419;VQSLOD=9.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,39:94:99:966,0,1525 1 237060732 . ACT A 688.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.114;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.96;RPA=2,1;RU=CT;ReadPosRankSum=2.829;SB=0.00;SOR=0.826;STR;VQSLOD=6.97;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:14,16:31:99:726,0,615 1 237061056 rs2853522 A C 662.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.390;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=5.786;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=-0.568;SB=-1.175e+02;SOR=0.102;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:15,23:38:99:691,0,449 1 237063335 rs1050996 G C 546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.031;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.636;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.524;SB=-2.720e+02;SOR=1.162;VQSLOD=7.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,23:43:99:575,0,551 1 237063504 rs9779 A G 412.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.633;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.329;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-1.472;SB=-1.250e+02;SOR=1.609;VQSLOD=5.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,18:36:99:441,0,475 1 237433524 rs2275288 C T 521.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.396;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.843;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.535;SB=-2.000e+02;SOR=1.201;VQSLOD=7.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,21:39:99:550,0,399 1 237433625 rs2275287 C T 640.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.022;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-0.561;SB=-3.080e+02;SOR=0.873;VQSLOD=6.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,26:49:99:669,0,582 1 237540615 rs10925391 A C 1438.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.379;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=1.274;SB=-7.190e+02;SOR=0.628;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:47,50:97:99:1467,0,1082 1 237551241 rs67140198 G GTC 2909.73 PASS AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;RPA=1,2;RU=TC;SB=-7.520e+02;SOR=2.262;STR;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:58:99:2947,172,0 1 237551376 rs10754602 T A 3847.77 PASS AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.83;SB=-2.330e+03;SOR=0.806;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,129:129:99:3876,289,0 1 237617757 rs3765097 C T 1073.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-5.370e+02;SOR=1.085;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:84:1102,84,0 1 237619875 . A AT 451.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;DP=92;ExcessHet=3.0103;FS=13.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.25;RPA=14,15;RU=T;ReadPosRankSum=1.100;SB=-7.200e+01;SOR=2.564;STR;VQSLOD=4.25;culprit=QD GT:AD:DP:GQ:PL 0/1:55,31:92:99:489,0,923 1 237620049 rs2045955 T C 3575.77 PASS AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2137;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.81;SB=-1.048e+03;SOR=2.281;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,109:109:99:3604,259,0 1 237632285 rs66596894 A AT 1053.73 PASS AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.92;SB=0.00;SOR=6.273;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:1091,66,0 1 237632595 . T TGTG 943.73 PASS AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.58;RPA=3,4;RU=GTG;SB=0.00;SOR=5.784;STR;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:23:51:981,51,0 1 237670140 rs2618702 A G 2243.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.70;SB=-1.439e+03;SOR=0.768;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2272,172,0 1 237711644 rs2618661 T C 751.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.25;SB=-7.697e+01;SOR=3.816;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:57:780,57,0 1 237711797 rs2253273 A G 2556.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.44;SB=-1.555e+03;SOR=0.791;VQSLOD=7.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2585,193,0 1 237729774 rs2248295 G A 404.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.059;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=1.306;SB=0.00;SOR=1.136;VQSLOD=10.00;culprit=FS GT:AD:DP:GQ:PL 0/1:10,15:25:99:433,0,288 1 237730124 rs2805390 A G 3827.77 PASS AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.47;SB=-4.630e+02;SOR=3.892;VQSLOD=4.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,109:109:99:3856,286,0 1 237730169 rs2779401 C T 1877.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.72;SB=0.00;SOR=7.864;VQSLOD=2.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1906,150,0 1 237730217 rs1824860 C T 114.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.83;ReadPosRankSum=-1.597;SB=0.00;SOR=0.368;VQSLOD=9.82;culprit=QD GT:AD:DP:GQ:PL 0/1:8,5:13:99:143,0,254 1 237732332 rs2618717 C T 132.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-0.100;SB=0.00;SOR=0.693;VQSLOD=10.41;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:161,0,169 1 237732395 rs2805396 G A 581.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.419;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.18;ReadPosRankSum=1.995;SB=0.00;SOR=0.957;VQSLOD=9.27;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:14,18:32:99:610,0,397 1 237789317 rs512336 A G 685.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=0.00;SOR=5.892;VQSLOD=8.41;culprit=DP GT:AD:DP:GQ:PL 1/1:0,18:18:54:714,54,0 1 237794603 rs1759123 A G 250.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.894;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=-0.250;SB=0.00;SOR=0.976;VQSLOD=10.33;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:279,0,149 1 237796850 rs12563366 A G 1274.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.824;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.461;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.14;ReadPosRankSum=1.334;SB=-6.780e+02;SOR=0.350;VQSLOD=9.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,52:79:99:1303,0,783 1 237801770 rs707189 T C 6176.77 PASS AC=2;AF=1.00;AN=2;DB;DP=205;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7164;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-2.654e+03;SOR=1.680;VQSLOD=6.00;culprit=DP GT:AD:DP:GQ:PL 1/1:0,205:205:99:6205,445,0 1 237802559 rs530109 T C 1863.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;SB=-7.130e+02;SOR=1.773;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1892,135,0 1 237814783 rs684923 C T 404.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.990;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.127;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.78;ReadPosRankSum=-0.443;SB=-1.760e+02;SOR=0.874;VQSLOD=6.77;culprit=QD GT:AD:DP:GQ:PL 0/1:34,18:52:99:433,0,821 1 237824332 rs471647 G A 953.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-1.911e+02;SOR=2.621;VQSLOD=4.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:72:982,72,0 1 237831103 rs477245 C A 421.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.44;SB=-3.777e+01;SOR=3.767;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:450,36,0 1 237862164 rs1521745 G C 557.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.325;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.581;SB=-6.500e+01;SOR=0.941;VQSLOD=8.99;culprit=FS GT:AD:DP:GQ:PL 0/1:27,19:46:99:586,0,786 1 237863718 rs2797436 T G 2574.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;SB=-1.018e+03;SOR=1.609;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2603,193,0 1 237865203 rs939699 C T 2220.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-3.170e+02;SOR=3.578;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2249,172,0 1 237872714 rs35261418 GT G 757.73 PASS AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.44;RPA=12,11;RU=T;SB=-5.397e+01;SOR=4.615;STR;VQSLOD=3.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:32:93:795,93,0 1 237881770 rs2797441 C T 1157.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.92;SB=-8.220e+02;SOR=0.739;VQSLOD=4.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:84:1186,84,0 1 237890437 rs2685301 C T 4915.77 PASS AC=2;AF=1.00;AN=2;DB;DP=172;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.58;SB=-3.284e+03;SOR=0.765;VQSLOD=5.38;culprit=DP GT:AD:DP:GQ:PL 1/1:0,172:172:99:4944,361,0 1 237893674 rs2797445 C T 1181.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.14;SB=-6.720e+02;SOR=1.005;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:87:1210,87,0 1 237895609 . C T 977.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.623;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.729;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.97;ReadPosRankSum=0.176;SB=-2.670e+02;SOR=1.280;VQSLOD=5.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,36:70:99:1006,0,835 1 237923053 rs2253831 C T 2267.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.45;SB=-7.980e+02;SOR=1.936;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2296,175,0 1 237946964 rs790889 T C 1440.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-6.570e+02;SOR=1.562;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1469,108,0 1 237951451 rs2256242 A G 416.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.73;SB=0.00;SOR=5.136;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:445,33,0 1 237957146 rs790902 G A 725.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-1.185e+02;SOR=3.258;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:57:754,57,0 1 237957161 rs790901 A G 970.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-2.730e+02;SOR=2.376;VQSLOD=7.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:72:999,72,0 1 237957309 rs790900 A C 1678.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.98;SB=-9.150e+02;SOR=1.160;VQSLOD=5.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1707,120,0 1 237965035 rs2790346 C A 771.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-2.760e+02;SOR=1.893;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:63:800,63,0 1 237965043 rs2790347 A G 793.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=-2.820e+02;SOR=1.802;VQSLOD=7.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:822,66,0 1 237965094 rs2794820 G T 1282.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-6.020e+02;SOR=1.127;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:96:1311,96,0 1 237965131 rs9428384 G A 1298.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=33.8219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.86;SB=-6.710e+02;SOR=1.154;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:96:1327,96,0 1 237965133 . A AT 778.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;DP=45;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.54;RPA=12,13;RU=T;ReadPosRankSum=-0.240;SB=-3.310e+02;SOR=1.085;STR;VQSLOD=6.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,34:45:79:816,0,79 1 237969638 rs790879 A G 1111.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=-1.971e+02;SOR=2.899;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:87:1140,87,0 1 238045590 rs2794813 C T 283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=-0.896;SB=0.00;SOR=0.804;VQSLOD=10.38;culprit=FS GT:AD:DP:GQ:PL 0/1:8,9:17:99:312,0,194 1 238045995 rs2275694 T C 2579.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.645;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=4.103;HaplotypeScore=3.3196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.97;ReadPosRankSum=1.396;SB=-1.131e+03;SOR=0.414;VQSLOD=7.80;culprit=DP GT:AD:DP:GQ:PL 0/1:64,88:152:99:2608,0,1718 1 238046253 rs2794814 T C 270.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.961;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=-0.118;SB=0.00;SOR=0.368;VQSLOD=10.04;culprit=FS GT:AD:DP:GQ:PL 0/1:17,11:28:99:299,0,566 1 238048325 rs2298100 A G 1579.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-9.720e+02;SOR=0.773;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:51:99:1608,117,0 1 238051933 rs2236595 C T 324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.701;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=-2.182;SB=-6.500e+01;SOR=0.836;VQSLOD=9.40;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,13:20:99:353,0,205 1 238053524 rs538499 T C 567.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.482;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.754;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=-0.203;SB=-1.510e+02;SOR=1.179;VQSLOD=7.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,22:47:99:596,0,688 1 238090514 rs545540 T A 229.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-0.201;SB=-1.240e+02;SOR=0.399;VQSLOD=9.88;culprit=FS GT:AD:DP:GQ:PL 0/1:6,11:17:99:258,0,138 1 238090601 rs80150242 GGGGTCA G 521.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;DB;DP=17;ExcessHet=3.0103;FS=8.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.35;RPA=2,1;RU=GGGTCA;ReadPosRankSum=1.270;SB=-1.490e+02;SOR=1.447;STR;VQSLOD=5.33;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:559,0,834 1 238090615 . T C 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;DP=18;Dels=0.00;ExcessHet=3.0103;FS=4.752;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.71;ReadPosRankSum=0.861;SB=-5.300e+01;SOR=1.479;VQSLOD=5.09;culprit=FS GT:AD:DP:GQ:PL 0/1:11,7:18:99:203,0,292 1 239216186 rs12754904 G A 266.80 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.68;SB=-1.991e+02;SOR=0.693;VQSLOD=5.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:21:295,21,0 1 240071579 rs200451506 G C 1278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.841;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=1.723;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.46;ReadPosRankSum=0.187;SB=-5.100e+02;SOR=0.922;VQSLOD=6.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,44:95:99:1307,0,1507 1 240254874 rs7521945 T C 261.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.70;ReadPosRankSum=1.982;SB=-3.400e+01;SOR=1.179;VQSLOD=8.78;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,10:14:92:290,0,92 1 240255568 rs140531536 GGGC G 322.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.545;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=2.037;POSITIVE_TRAIN_SITE;QD=11.13;RPA=5,4;RU=GGC;ReadPosRankSum=0.757;SB=-6.500e+01;SOR=0.693;STR;VQSLOD=3.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,10:32:99:360,0,943 1 240256822 rs10926124 C A 644.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.531;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=3.391;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.43;ReadPosRankSum=1.027;SB=-1.260e+02;SOR=1.445;VQSLOD=6.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,21:37:99:673,0,404 1 240286716 rs3738433 G A 1252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.642;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=2.026;HaplotypeScore=3.5764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=0.069;SB=-3.470e+02;SOR=1.033;VQSLOD=8.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,46:86:99:1281,0,983 1 240308460 rs12723947 C T 315.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-1.553e+02;SOR=1.085;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:344,27,0 1 240334047 rs140107138 CTGTT C 895.73 PASS AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=-3.631e+02;SOR=1.179;VQSLOD=5.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:15:39:933,39,0 1 240351628 rs4659948 T C 1816.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=2.052;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-0.240;SB=-9.560e+02;SOR=0.917;VQSLOD=7.77;culprit=DP GT:AD:DP:GQ:PL 0/1:79,72:152:99:1845,0,2013 1 240372043 rs199579391 A C 1101.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.132;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=1.812;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.12;ReadPosRankSum=1.348;SB=-7.170e+02;SOR=0.520;VQSLOD=8.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,47:84:99:1130,0,1143 1 240421383 rs10926181 G A 289.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=-2.039;SB=-9.732e-01;SOR=1.562;VQSLOD=6.21;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:18,10:28:99:318,0,551 1 240492543 rs6686353 G A 710.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.379;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.059;HaplotypeScore=5.6703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-0.465;SB=-2.580e+02;SOR=1.099;VQSLOD=7.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,27:61:99:739,0,954 1 240492734 rs3795677 G A 1002.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=1.632;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=-1.117;SB=-6.030e+02;SOR=0.805;VQSLOD=7.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,43:96:99:1031,0,1408 1 240492952 rs3795679 G C 103.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.65;ReadPosRankSum=0.233;SB=-3.100e+01;SOR=0.941;VQSLOD=9.35;culprit=QD GT:AD:DP:GQ:PL 0/1:7,5:12:99:132,0,184 1 240497265 rs10157874 A C 465.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.602;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.238;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-1.734;SB=-2.850e+02;SOR=0.481;VQSLOD=9.22;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:21,18:39:99:494,0,610 1 240497598 rs12122068 T C 235.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.506;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=3.388;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=-0.812;SB=-4.276e+01;SOR=0.144;VQSLOD=9.86;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,11:24:99:264,0,451 1 240601269 rs2356386 A G 1141.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.60;SB=-3.377e+01;SOR=5.610;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:96:1170,96,0 1 240655330 rs9287248 G A 486.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.18;SB=-3.890e+02;SOR=0.784;VQSLOD=3.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:36:515,36,0 1 240975213 rs2275742 T C 680.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.835;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.298;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=1.331;SB=-1.760e+02;SOR=1.038;VQSLOD=7.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,26:50:99:709,0,660 1 240975435 rs2275744 C T 292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.047;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.039;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=2.674;SB=-8.097e+01;SOR=0.160;VQSLOD=8.49;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,11:18:99:321,0,202 1 240977964 rs12744536 G T 349.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.947;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.086;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=-1.739;SB=-1.070e+02;SOR=0.330;VQSLOD=9.62;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:8,12:20:99:378,0,231 1 240978276 rs199649548 AT A 474.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.142;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQ0=0;MQRankSum=0.793;POSITIVE_TRAIN_SITE;QD=24.99;ReadPosRankSum=1.668;SB=0.00;SOR=1.609;VQSLOD=2.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,13:19:99:512,0,225 1 240979803 rs3738068 G A 906.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.78;SB=0.00;SOR=6.439;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:72:935,72,0 1 241146322 rs7520707 A G 381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-1.533e+02;SOR=1.609;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:410,33,0 1 241519098 rs4659599 T A 3085.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.11;SB=-1.825e+03;SOR=0.987;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3114,232,0 1 241663902 rs370495955 T TGAGA 526.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.048;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.69;MQ0=0;MQRankSum=1.919;QD=26.34;RPA=19,21;RU=GA;ReadPosRankSum=-1.699;SB=-1.288e+02;SOR=0.368;STR;VQSLOD=1.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,11:38:99:564,0,197 1 241667233 rs4660099 C T 152.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.082;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.281;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.77;ReadPosRankSum=2.235;SB=-6.829e-02;SOR=2.179;VQSLOD=4.61;culprit=QD GT:AD:DP:GQ:PL 0/1:25,7:32:99:181,0,741 1 241667244 rs4659607 G T 1094.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-3.100e+02;SOR=2.368;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:84:1123,84,0 1 241676758 rs10926500 C T 904.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.771;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.337;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=0.653;SB=-2.580e+02;SOR=1.051;VQSLOD=7.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,34:64:99:933,0,770 1 241695541 . G A 754.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.659;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.15;ReadPosRankSum=-0.735;SB=-6.800e+01;SOR=1.514;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 0/1:19,25:44:99:783,0,583 1 241712134 rs11556464 C T 502.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.676;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-0.416;SB=-2.630e+02;SOR=0.846;VQSLOD=9.89;culprit=FS GT:AD:DP:GQ:PL 0/1:20,22:42:99:531,0,512 1 241729614 rs10754731 T G 380.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-4.176e+01;SOR=3.611;VQSLOD=7.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:409,30,0 1 241730054 rs2275163 C T 577.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.950;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=6.885;HaplotypeScore=2.5540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=-1.218;SB=-8.100e+01;SOR=1.802;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 0/1:24,21:45:99:606,0,655 1 241730153 rs9970943 G T 329.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=-3.976e+01;SOR=3.258;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:358,27,0 1 241755348 rs1053230 C T 722.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.415;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=3.209;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=-0.268;SB=-4.520e+02;SOR=0.648;VQSLOD=5.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,30:71:99:751,0,1079 1 241761349 rs45572340 T C 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.449;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=0.879;SB=-1.765e+00;SOR=1.402;VQSLOD=9.21;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:207,0,231 1 241767930 rs632966 G A 2194.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.35;SB=-9.080e+02;SOR=1.609;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2223,163,0 1 241798631 rs3737604 C T 1575.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=-0.114;SB=-8.160e+02;SOR=0.653;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:61,62:123:99:1604,0,1484 1 241847018 rs10802979 C T 635.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.75;SB=0.00;SOR=5.892;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:664,54,0 1 241850606 . TAA T 138.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.31;MQ0=0;MQRankSum=1.036;POSITIVE_TRAIN_SITE;QD=13.87;RPA=17,15;RU=A;ReadPosRankSum=0.431;SB=0.00;SOR=1.609;STR;VQSLOD=3.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,7:10:59:176,0,59 1 241850657 rs78752834 T C 342.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.288;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.126;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=1.161;SB=-1.331e+02;SOR=0.264;VQSLOD=9.54;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,14:22:99:371,0,249 1 241886754 rs10926548 T C 326.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.244;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.505;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.78;ReadPosRankSum=-0.147;SB=-1.220e+02;SOR=0.370;VQSLOD=9.03;culprit=QD GT:AD:DP:GQ:PL 0/1:28,14:42:99:355,0,787 1 241886764 rs10926549 A G 257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.740;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.06;ReadPosRankSum=-1.013;SB=-6.800e+01;SOR=0.269;VQSLOD=9.31;culprit=QD GT:AD:DP:GQ:PL 0/1:20,12:32:99:286,0,603 1 241901935 rs6413961 A C 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.234;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=-0.187;SB=0.00;SOR=0.804;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:8,9:17:99:315,0,226 1 241907691 rs7418599 A G 609.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=0.991;SB=-2.890e+02;SOR=0.833;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:30,27:57:99:638,0,748 1 241907817 rs10802990 T C 872.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.818;SB=-5.120e+02;SOR=0.720;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:34,37:71:99:901,0,904 1 241913062 . C CT 431.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.378;DP=27;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.80;MQ0=0;MQRankSum=1.109;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.61;RPA=5,6;RU=T;ReadPosRankSum=1.025;SB=-1.790e+02;SOR=0.346;STR;VQSLOD=0.388;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,17:27:99:469,0,192 1 241932567 rs56396922 C G 363.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.74;ReadPosRankSum=-1.194;SB=0.00;SOR=1.609;VQSLOD=8.67;culprit=FS GT:AD:DP:GQ:PL 0/1:5,11:16:99:392,0,148 1 241933876 rs11809239 A G 776.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.425;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=7.933;HaplotypeScore=2.6112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=0.578;SB=-4.010e+02;SOR=0.158;VQSLOD=7.60;culprit=FS GT:AD:DP:GQ:PL 0/1:31,31:62:99:805,0,867 1 241935987 rs35632793 AC A 261.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;DB;DP=14;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=61.01;MQ0=0;MQRankSum=0.736;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.70;ReadPosRankSum=0.313;SB=-1.764e+00;SOR=2.303;VQSLOD=0.199;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,8:14:99:299,0,241 1 241943271 rs41308208 C G 77.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.11;ReadPosRankSum=-1.632;SB=-1.709e+01;SOR=1.112;VQSLOD=7.75;culprit=QD GT:AD:DP:GQ:PL 0/1:20,5:25:99:106,0,570 1 241946766 rs953597 A C 615.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.498;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=-1.248;SB=-2.820e+02;SOR=0.379;VQSLOD=9.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,26:61:99:644,0,1027 1 241951034 rs6429312 C T 698.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.239;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=4.276;HaplotypeScore=7.4111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=0.314;SB=-2.402e+01;SOR=1.711;VQSLOD=5.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,23:54:99:727,0,859 1 241951106 rs6429313 A G 1384.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.853;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=-0.653;SB=-6.840e+02;SOR=0.667;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:66,59:126:99:1413,0,1735 1 241951107 rs12021981 A C 1748.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.347;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.772;SB=-7.730e+02;SOR=0.769;VQSLOD=8.48;culprit=FS GT:AD:DP:GQ:PL 0/1:60,66:127:99:1777,0,1431 1 241958359 . T C 328.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.763;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.70;ReadPosRankSum=-1.595;SB=0.00;SOR=0.551;VQSLOD=8.39;culprit=FS GT:AD:DP:GQ:PL 0/1:13,11:24:99:357,0,436 1 241958401 rs66506407 C CTTGT 1492.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;DB;DP=49;ExcessHet=3.0103;FS=6.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.85;ReadPosRankSum=0.100;SB=-5.150e-01;SOR=2.833;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 0/1:26,23:49:99:1530,0,1641 1 241958409 rs55865277 C T 750.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.845;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=0.211;SB=-4.900e+01;SOR=0.970;VQSLOD=9.10;culprit=FS GT:AD:DP:GQ:PL 0/1:27,25:52:99:779,0,895 1 241964559 rs4658661 C T 1707.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.193;SB=-9.350e+02;SOR=0.714;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:60,68:128:99:1736,0,1578 1 242015820 rs2526704 A G 365.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=0.00;SOR=4.804;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:394,30,0 1 242016838 rs4149868 T C 640.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.245;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-1.722;SB=-2.240e+02;SOR=0.538;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:20,24:44:99:669,0,515 1 242020495 rs2995544 C T 1434.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=-1.403e+02;SOR=4.073;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1463,111,0 1 242022130 rs2526699 T C 497.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=0.00;SOR=5.283;VQSLOD=8.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:526,39,0 1 242030151 rs735943 A G 2516.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.93;SB=-1.073e+03;SOR=1.749;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2545,193,0 1 242030483 rs4149947 A G 98.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=4.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.05;ReadPosRankSum=0.977;SB=-3.377e+01;SOR=0.061;VQSLOD=8.65;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:14:99:127,0,310 1 242035438 rs4149965 G A 777.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.599;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.847;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=0.404;SB=-4.760e+02;SOR=0.586;VQSLOD=9.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,34:80:99:806,0,1245 1 242042301 rs1047840 G A 1509.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.405;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=1.521;HaplotypeScore=4.6402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=1.920;SB=-7.950e+02;SOR=0.887;VQSLOD=7.60;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:56,55:111:99:1538,0,1431 1 242042545 rs1776148 A G 4390.77 PASS AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.67;SB=-2.743e+03;SOR=0.776;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,148:148:99:4419,322,0 1 242042690 rs1418760 A G 1069.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.400;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=5.359;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=-0.600;SB=-2.890e+02;SOR=0.202;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 0/1:20,34:54:99:1098,0,575 1 242042735 rs4149980 G A 285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.624;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=0.668;SB=-2.601e+01;SOR=0.984;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 0/1:19,11:30:99:314,0,616 1 242042752 . A AAT 353.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.653;DP=23;ExcessHet=3.0103;FS=4.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=-0.145;SB=-5.776e+01;SOR=0.078;VQSLOD=9.49;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,8:23:99:391,0,617 1 242042768 rs4149982 C T 122.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=-2.027;SB=-4.076e+01;SOR=0.105;VQSLOD=9.31;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:8,6:14:99:151,0,294 1 242045275 rs1635498 C T 2647.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-1.489e+03;SOR=0.863;VQSLOD=7.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2676,199,0 1 242048464 rs1635489 G A 387.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;SB=0.00;SOR=4.977;VQSLOD=7.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:416,33,0 1 242048514 . G GTAAATAAA 2119.73 PASS AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;RPA=5,7;RU=TAAA;SB=0.00;SOR=6.273;STR;VQSLOD=8.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:2157,66,0 1 242048538 rs12729007 G A 419.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.033;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.53;MQ0=0;MQRankSum=0.435;QD=10.24;ReadPosRankSum=1.953;SB=-3.301e+01;SOR=0.287;VQSLOD=1.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,15:41:99:448,0,877 1 242053042 rs851797 A G 1000.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.22;SB=-4.276e+01;SOR=5.136;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:75:1029,75,0 1 242120953 rs3851306 T C 83.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=1.618;POSITIVE_TRAIN_SITE;QD=5.24;ReadPosRankSum=0.284;SB=0.00;SOR=0.223;VQSLOD=2.93;culprit=QD GT:AD:DP:GQ:PL 0/1:11,5:16:99:112,0,382 1 242121011 rs34082719 ATAAG A 765.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.991;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQ0=0;MQRankSum=1.604;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=-0.045;SB=-1.750e+02;SOR=0.846;VQSLOD=3.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,14:48:99:803,0,2287 1 242121052 rs3851305 C G 620.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.107;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.55;ReadPosRankSum=-1.848;SB=-1.580e+02;SOR=0.836;VQSLOD=7.91;culprit=FS GT:AD:DP:GQ:PL 0/1:40,25:65:99:649,0,1145 1 242121061 rs3915586 C T 656.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.686;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=2.305;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=-0.373;SB=-1.310e+02;SOR=1.112;VQSLOD=6.94;culprit=QD GT:AD:DP:GQ:PL 0/1:46,25:71:99:685,0,1237 1 242121540 rs56335758 G A 1540.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.456;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.655;HaplotypeScore=3.9937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=1.020;SB=-8.360e+02;SOR=0.599;VQSLOD=8.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:72,65:137:99:1569,0,1958 1 242121796 rs3851304 G T 2099.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.273;DB;DP=178;Dels=0.00;ExcessHet=3.0103;FS=2.685;HaplotypeScore=3.6810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-0.483;SB=-9.880e+02;SOR=0.950;VQSLOD=6.78;culprit=DP GT:AD:DP:GQ:PL 0/1:96,82:178:99:2128,0,2839 1 242156729 rs28706113 G A 298.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.90;SB=-1.891e+02;SOR=1.022;VQSLOD=4.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:24:327,24,0 1 242156734 rs28613024 C T 346.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.90;SB=-1.781e+02;SOR=1.022;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:375,27,0 1 242161679 rs28408563 G A 355.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.347;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.792;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-0.318;SB=-1.390e+02;SOR=0.357;VQSLOD=9.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,15:27:99:384,0,339 1 242222754 rs871766 A G 601.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.35;SB=-3.300e+02;SOR=1.085;VQSLOD=4.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:45:630,45,0 1 242222991 . T C 189.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.484;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.027;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.55;ReadPosRankSum=-2.105;SB=-1.020e+02;SOR=0.307;VQSLOD=8.02;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:6,8:14:99:218,0,165 1 242223343 rs10158939 G A 150.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=0.000;SB=-9.900e+01;SOR=0.039;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:179,0,119 1 242223399 rs871765 A G 193.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=2.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=-0.886;SB=-1.050e+02;SOR=0.991;VQSLOD=5.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,8:11:93:222,0,93 1 242383170 rs3051891 T TAC 1145.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.91;RPA=1,2;RU=AC;ReadPosRankSum=1.088;SB=-2.370e+02;SOR=0.793;STR;VQSLOD=8.61;culprit=FS GT:AD:DP:GQ:PL 0/1:24,26:50:99:1183,0,1070 1 242383201 rs1973498 T G 1464.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.368;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.918;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=-0.069;SB=-5.070e+02;SOR=0.560;VQSLOD=9.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,52:90:99:1493,0,997 1 242383510 rs7547029 T C 942.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.239;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=0.008;SB=-1.030e+02;SOR=0.909;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:25,30:55:99:971,0,737 1 242428834 rs2053192 T A 452.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-1.195e+02;SOR=2.448;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:481,36,0 1 242612661 rs75401237 C T 1154.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=5.236;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=0.010;SB=-3.350e+02;SOR=1.306;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 0/1:63,43:106:99:1183,0,1647 1 243335940 rs74889777 GA G 64.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;DB;DP=18;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.60;RPA=10,9;RU=A;ReadPosRankSum=0.750;SB=-5.150e-01;SOR=2.179;STR;VQSLOD=4.96;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:102,0,299 1 243388370 rs10926973 A T 443.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.196;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=0.752;SB=-3.400e+01;SOR=0.760;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:15,16:31:99:472,0,444 1 243419429 rs3904682 T A 944.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=4.053;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-0.098;SB=-6.160e+02;SOR=0.384;VQSLOD=9.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,43:92:99:973,0,1384 1 243433654 rs2275154 A G 291.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.849;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.350;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=0.858;SB=-3.200e+01;SOR=1.508;VQSLOD=6.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,10:19:99:320,0,237 1 243449881 rs3818802 G A 389.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.906;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=0.693;SB=-6.200e+01;SOR=1.609;VQSLOD=6.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,13:26:99:418,0,351 1 243481431 rs2783972 A G 964.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.436;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=1.170;SB=-3.970e+02;SOR=0.641;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:25,37:62:99:993,0,678 1 243481556 rs2636323 C G 105.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-1.242;SB=0.00;SOR=0.412;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:134,0,214 1 243493907 rs2275155 A T 647.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.060;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=0.729;SB=-3.830e+02;SOR=0.693;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:13,28:41:99:676,0,286 1 243507680 . C CA 309.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.129;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.36;RPA=1,2;RU=A;ReadPosRankSum=-0.619;SB=-4.676e+01;SOR=0.275;STR;VQSLOD=7.75;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:347,0,262 1 243579112 rs10927011 G A 568.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.400;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=0.417;SB=-2.120e+02;SOR=0.230;VQSLOD=10.41;culprit=SOR GT:AD:DP:GQ:PL 0/1:20,21:41:99:597,0,574 1 243736210 rs66631932 CT C 201.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=0;MQRankSum=1.246;QD=7.76;RPA=15,14;RU=T;ReadPosRankSum=-0.416;SB=-7.200e+01;SOR=0.509;STR;VQSLOD=1.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,15:27:99:239,0,207 1 243777066 rs2168812 G A 748.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.922;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.639;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=1.236;SB=-9.200e+01;SOR=1.267;VQSLOD=6.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,25:46:99:777,0,673 1 244218402 rs35108413 G A 3379.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.179;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.980;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=0.465;SB=-1.750e+03;SOR=0.584;VQSLOD=6.80;culprit=DP GT:AD:DP:GQ:PL 0/1:128,122:250:99:3408,0,3362 1 244527857 rs10927214 T C 184.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.389;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=0.069;SB=-3.777e+01;SOR=0.223;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:213,0,163 1 244528127 rs9782996 T C 1409.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.04;SB=-3.540e+02;SOR=2.409;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1438,102,0 1 244552134 rs61095163 CATTT C 562.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQ0=0;MQRankSum=0.464;POSITIVE_TRAIN_SITE;QD=30.15;ReadPosRankSum=0.778;SB=0.00;SOR=1.329;VQSLOD=3.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,9:14:99:600,0,348 1 244573030 rs2306084 C A 503.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.049;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.997;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.13;ReadPosRankSum=-0.787;SB=-2.150e+02;SOR=0.849;VQSLOD=6.91;culprit=QD GT:AD:DP:GQ:PL 0/1:40,22:62:99:532,0,959 1 244587195 rs57748551 A G 382.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.114;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=0.000;SB=-6.400e+01;SOR=1.739;VQSLOD=5.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,14:24:99:411,0,234 1 244601152 rs3127465 C T 1972.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-8.490e+02;SOR=1.681;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2001,147,0 1 244624887 rs3124058 T C 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.600;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=8.820;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=2.064;SB=-1.330e+02;SOR=0.982;VQSLOD=5.26;culprit=FS GT:AD:DP:GQ:PL 0/1:6,11:17:99:295,0,161 1 244626948 rs35832545 CA C 181.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQ0=0;MQRankSum=1.273;QD=8.26;RPA=16,15;RU=A;ReadPosRankSum=0.802;SB=-2.805e+01;SOR=0.582;STR;VQSLOD=1.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,13:22:99:219,0,110 1 244723920 rs7522899 C G 593.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.769;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=6.667;HaplotypeScore=2.7547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-0.043;SB=-2.004e+01;SOR=2.236;VQSLOD=5.72;culprit=FS GT:AD:DP:GQ:PL 0/1:28,19:47:99:622,0,831 1 244724092 rs7544794 G A 1529.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.749;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.693;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=1.640;SB=-8.330e+02;SOR=0.585;VQSLOD=9.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,57:118:99:1558,0,1457 1 244735858 rs10927267 A G 1281.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.952;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=3.790;HaplotypeScore=2.7476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-0.320;SB=-5.270e+02;SOR=1.154;VQSLOD=7.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,45:99:99:1310,0,1340 1 244747051 rs6429486 G C 390.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.518;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-0.245;SB=-1.765e+00;SOR=1.863;VQSLOD=8.75;culprit=FS GT:AD:DP:GQ:PL 0/1:12,13:25:99:419,0,387 1 244747150 rs6429487 G A 844.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.220;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.155;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-0.034;SB=-5.110e+02;SOR=0.419;VQSLOD=10.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,35:64:99:873,0,736 1 244747293 rs6429488 C T 430.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.256;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=1.235;SB=-1.210e+02;SOR=0.859;VQSLOD=9.21;culprit=FS GT:AD:DP:GQ:PL 0/1:23,18:41:99:459,0,608 1 244747294 rs6429489 G A 455.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.031;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=1.183;SB=-1.210e+02;SOR=0.859;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:23,18:41:99:484,0,640 1 244747339 rs6429490 G A 249.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.674;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-0.845;SB=-1.765e+00;SOR=1.911;VQSLOD=7.81;culprit=FS GT:AD:DP:GQ:PL 0/1:10,11:21:99:278,0,274 1 244754961 rs41269387 C A 262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.607;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=0.033;SB=-6.500e+01;SOR=1.162;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:11,11:22:99:291,0,287 1 244773514 rs4658645 C T 442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.990;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=0.230;SB=-2.210e+02;SOR=0.859;VQSLOD=9.10;culprit=FS GT:AD:DP:GQ:PL 0/1:28,20:48:99:471,0,749 1 244803205 . CTT C 1305.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.861;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQ0=0;MQRankSum=0.354;POSITIVE_TRAIN_SITE;QD=32.64;RPA=14,12;RU=T;ReadPosRankSum=-0.420;SB=-3.440e+02;SOR=1.075;STR;VQSLOD=3.17;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,39:40:99:1279,116,0 1 244817424 rs77779543 T A 144.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.786;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.52;ReadPosRankSum=-1.714;SB=0.00;SOR=0.293;VQSLOD=9.23;culprit=QD GT:AD:DP:GQ:PL 0/1:11,6:17:99:173,0,371 1 245005492 rs377483662 T TG 958.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.367;DB;DP=52;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.44;ReadPosRankSum=0.174;SB=-3.030e+02;SOR=0.512;VQSLOD=7.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,24:52:99:996,0,939 1 245005713 rs12095737 A C 234.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.316;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.793;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=0.521;SB=-5.150e-01;SOR=2.030;VQSLOD=6.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,8:24:99:263,0,432 1 245018456 rs113724064 TAGCA T 1065.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;DB;DP=26;ExcessHet=3.0103;FS=5.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.30;RPA=2,1;RU=AGCA;ReadPosRankSum=0.858;SB=-3.521e+02;SOR=0.071;STR;VQSLOD=3.43;culprit=FS GT:AD:DP:GQ:PL 0/1:7,17:26:99:1103,0,411 1 245019724 . A T 586.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.227;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.317;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.97;ReadPosRankSum=0.164;SB=-2.440e+02;SOR=0.446;VQSLOD=8.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,22:42:99:615,0,538 1 245021132 rs9730334 C G 404.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.273;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=1.026;SB=-1.100e+02;SOR=0.693;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:10,14:24:99:433,0,285 1 245021291 rs11299108 TA T 395.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.76;RPA=13,12;RU=A;ReadPosRankSum=-0.055;SB=-1.460e+02;SOR=0.631;STR;VQSLOD=7.48;culprit=QD GT:AD:DP:GQ:PL 0/1:25,26:56:99:433,0,497 1 245025697 . T TAA,TAAA 783.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.039;DP=32;ExcessHet=3.0103;FS=5.535;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.48;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.12;RPA=19,21,22;RU=A;ReadPosRankSum=1.522;SB=-5.341e+01;SOR=3.538;STR;VQSLOD=5.18;culprit=FS GT:AD:DP:GQ:PL 1/2:3,12,15:32:99:821,278,269,138,0,146 1 245133489 rs7545078 T G 571.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=-3.120e+02;SOR=0.914;VQSLOD=4.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:600,45,0 1 245133539 rs7542813 A G 607.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-2.830e+02;SOR=1.292;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:45:636,45,0 1 245133549 rs10536649 GGC G 973.73 PASS AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.91;RPA=4,3;RU=GC;SB=-4.380e+02;SOR=0.990;STR;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:1011,63,0 1 245133623 rs373891984 T TCCTCC 1140.73 PASS AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.89;RPA=1,2;RU=CCTCC;SB=-3.103e+02;SOR=1.911;STR;VQSLOD=5.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:1178,45,0 1 245133662 rs61844237 G C 370.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.713;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQ0=0;MQRankSum=-1.109;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=0.903;SB=-2.100e+02;SOR=0.355;VQSLOD=0.084;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,13:22:99:399,0,287 1 245179011 rs201488109 CA C 382.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQ0=0;MQRankSum=0.000;QD=13.67;RPA=16,15;RU=A;ReadPosRankSum=-0.540;SB=-1.510e+02;SOR=1.264;STR;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 0/1:5,23:29:54:420,0,54 1 245179171 rs1196365 C T 1242.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.62;SB=-7.590e+02;SOR=1.038;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:93:1271,93,0 1 245179188 rs1196366 G T 1053.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.11;SB=-5.140e+02;SOR=1.308;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:78:1082,78,0 1 245222634 rs694793 C G 1386.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-3.600e+02;SOR=2.687;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1415,111,0 1 245222839 rs579269 G T 2043.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.62;SB=-7.230e+02;SOR=2.139;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2072,156,0 1 245318688 rs12409851 C T 1346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=3.468;HaplotypeScore=2.3913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=0.719;SB=-7.070e+02;SOR=1.056;VQSLOD=7.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,53:114:99:1375,0,1465 1 245703819 rs7551348 T C 634.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-1.673e+02;SOR=2.531;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:48:663,48,0 1 245703990 rs9919234 G T 866.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.303;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.939;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-0.119;SB=-4.310e+02;SOR=0.892;VQSLOD=8.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,33:67:99:895,0,997 1 245765719 rs1771526 C G 914.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.00;SB=0.00;SOR=6.358;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:943,69,0 1 245765800 rs7541927 T A 614.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.106;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-0.249;SB=-1.760e+02;SOR=0.588;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:29,23:52:99:643,0,809 1 245771196 rs74154480 C T 1105.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.284;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.29;ReadPosRankSum=1.787;SB=-4.630e+02;SOR=0.765;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 0/1:75,44:120:99:1134,0,1863 1 245851304 rs6701084 A G 3434.77 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-1.852e+03;SOR=0.922;VQSLOD=5.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,114:114:99:3463,259,0 1 245861571 rs3205034 C T 872.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.014;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.186;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.646;SB=-2.400e+02;SOR=1.056;VQSLOD=8.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,29:67:99:901,0,909 1 245912840 rs8025 C T 2556.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;SB=-1.500e+03;SOR=0.768;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2585,190,0 1 245927242 rs12035406 G A 325.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=-0.139;SB=-5.200e+01;SOR=1.381;VQSLOD=6.67;culprit=QD GT:AD:DP:GQ:PL 0/1:23,12:35:99:354,0,589 1 246021941 rs2362587 T C 1572.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=2.076;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=-0.013;SB=-9.310e+02;SOR=0.539;VQSLOD=7.97;culprit=DP GT:AD:DP:GQ:PL 0/1:88,65:153:99:1601,0,2295 1 246022071 rs2185370 C T 530.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=6.345;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-1.824;SB=-4.700e+01;SOR=2.200;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 0/1:19,18:37:99:559,0,522 1 246026947 rs9727434 A G 79.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.25;ReadPosRankSum=0.365;SB=0.00;SOR=0.330;VQSLOD=9.40;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:99:108,0,240 1 246027024 rs12123124 A G 417.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.532;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.531;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=-1.586;SB=-1.740e+02;SOR=0.309;VQSLOD=9.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,17:38:99:446,0,610 1 246027029 rs61830203 A T 457.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.805;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.494;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=-1.663;SB=-1.730e+02;SOR=0.351;VQSLOD=9.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,18:39:99:486,0,599 1 246027034 rs2153404 G C 1299.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-3.700e+02;SOR=2.419;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1328,99,0 1 246078968 rs41305945 G A 1640.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.484;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-0.178;SB=-7.950e+02;SOR=0.617;VQSLOD=9.00;culprit=FS GT:AD:DP:GQ:PL 0/1:53,64:117:99:1669,0,1272 1 246091457 rs6669768 T C 662.80 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.149;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.51;ReadPosRankSum=0.833;SB=-1.971e+02;SOR=1.329;VQSLOD=8.89;culprit=FS GT:AD:DP:GQ:PL 1/1:1,24:25:21:691,21,0 1 246093465 . GA G 570.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;DP=48;ExcessHet=3.0103;FS=1.640;MLEAC=1;MLEAF=0.500;MQ=60.45;MQ0=0;MQRankSum=0.891;POSITIVE_TRAIN_SITE;QD=13.27;RPA=14,13;RU=A;ReadPosRankSum=-1.190;SB=-2.118e+02;SOR=0.375;STR;VQSLOD=0.176;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,34:48:99:608,0,107 1 246110573 rs10802300 A G 1120.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.96;SB=-2.800e+02;SOR=2.584;VQSLOD=8.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:84:1149,84,0 1 246489769 . T TA 184.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.773;DP=47;ExcessHet=3.0103;FS=8.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.28;RPA=14,15;RU=A;ReadPosRankSum=-0.564;SB=-7.227e+01;SOR=0.061;STR;VQSLOD=4.89;culprit=QD GT:AD:DP:GQ:PL 0/1:22,13:47:99:222,0,394 1 246490438 rs3737245 T C 1916.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.85;SB=-2.720e+02;SOR=3.651;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1945,147,0 1 246490442 rs3737246 A G 1927.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SB=-3.240e+02;SOR=3.575;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1956,156,0 1 246494012 rs80307939 T C 293.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.445;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.98;ReadPosRankSum=-0.974;SB=0.00;SOR=1.329;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:322,0,145 1 246670281 rs6671418 G C 1013.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.6701;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.68;SB=-4.650e+02;SOR=1.670;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:78:1042,78,0 1 246670333 rs6426303 A G 2160.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.30;SB=-1.169e+03;SOR=0.724;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:65:99:2189,163,0 1 246670481 rs7520453 C G 2665.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-1.336e+03;SOR=1.338;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2694,196,0 1 246670626 rs35937533 A AGGGGC 409.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;RPA=2,3;RU=GGGGC;SB=0.00;SOR=4.174;STR;VQSLOD=7.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,7:16:21:447,21,0 1 246704563 rs764243 C T 505.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.020;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-0.782;SB=-6.401e+01;SOR=0.278;VQSLOD=9.95;culprit=FS GT:AD:DP:GQ:PL 0/1:15,19:34:99:534,0,425 1 246707858 rs3129568 A G 258.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.912;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.533;SB=-4.276e+01;SOR=0.269;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:287,0,267 1 246711789 rs3124131 T A 390.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=4.041;HaplotypeScore=1.8939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=0.376;SB=-1.710e+02;SOR=0.169;VQSLOD=9.83;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,16:31:99:419,0,436 1 246711816 rs5782396 GA G 387.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;DB;DP=40;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;RPA=5,4;RU=A;ReadPosRankSum=0.723;SB=-1.010e+02;SOR=1.085;STR;VQSLOD=7.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,17:40:99:425,0,618 1 246712033 rs1890160 A G 1074.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.47;SB=-4.376e+01;SOR=5.283;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:81:1103,81,0 1 246714587 rs10754526 G A 138.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.591;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.30;ReadPosRankSum=-0.677;SB=-9.500e+01;SOR=0.631;VQSLOD=9.06;culprit=QD GT:AD:DP:GQ:PL 0/1:12,7:19:99:167,0,319 1 246714631 rs80342781 T A 104.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.51;ReadPosRankSum=-0.571;SB=-5.000e+01;SOR=0.804;VQSLOD=8.39;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:133,0,307 1 246714632 rs75477023 G A 103.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.123;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.46;ReadPosRankSum=-0.571;SB=-5.900e+01;SOR=0.804;VQSLOD=8.48;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:132,0,305 1 246714636 rs34850511 T A 98.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.243;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.49;ReadPosRankSum=-1.173;SB=-6.200e+01;SOR=0.619;VQSLOD=9.02;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:127,0,294 1 246720798 rs3124071 G A 954.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6013;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.08;SB=-5.470e+02;SOR=1.085;VQSLOD=4.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:35:72:983,72,0 1 246727558 rs3120713 G T 932.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.31;SB=-3.130e+02;SOR=1.863;VQSLOD=7.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:961,72,0 1 246754778 . G GA 795.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;DP=42;ExcessHet=3.0103;FS=2.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.95;RPA=4,5;RU=A;ReadPosRankSum=0.898;SB=-1.065e+02;SOR=0.209;STR;VQSLOD=8.91;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,29:42:99:833,0,282 1 246755124 rs6702823 T C 2193.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-1.256e+03;SOR=0.752;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2222,169,0 1 246797710 rs35650980 G T 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.276;SB=-3.401e+01;SOR=0.551;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:171,0,211 1 246797714 . G GT 110.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.52;RPA=7,8;RU=T;ReadPosRankSum=0.551;SB=-2.503e+01;SOR=0.551;STR;VQSLOD=9.65;culprit=QD GT:AD:DP:GQ:PL 0/1:7,6:13:99:148,0,142 1 246797974 rs6680646 T A 344.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.307;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.24;ReadPosRankSum=-0.502;SB=-3.876e+01;SOR=0.368;VQSLOD=9.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,12:20:99:373,0,236 1 246802868 rs6659356 A G 214.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=10.532;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=-0.728;SB=-2.657e-01;SOR=3.816;VQSLOD=5.12;culprit=FS GT:AD:DP:GQ:PL 0/1:9,7:16:99:243,0,184 1 246804824 rs12401692 T C 114.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-0.100;SB=-3.101e+01;SOR=0.693;VQSLOD=10.33;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:143,0,139 1 246805435 . G T 57.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.522;HaplotypeScore=12.0153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-0.361;SB=-3.577e+01;SOR=0.061;VQSLOD=6.76;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:86:86,0,167 1 246903654 rs3007322 G C 804.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.53;SB=-1.245e+02;SOR=2.925;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:25:63:833,63,0 1 246929483 rs12144408 A G 2013.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.45;SB=-4.430e+02;SOR=2.794;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:2042,150,0 1 246939610 rs66927148 A ATATT 4474.73 PASS AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.06;RPA=2,3;RU=TATT;SB=-1.964e+03;SOR=0.971;STR;VQSLOD=4.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:82:99:4512,214,0 1 246939856 rs3795465 G A 3357.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-1.466e+03;SOR=1.257;VQSLOD=5.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3386,253,0 1 246939943 rs6685364 T C 3957.77 PASS AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.76;SB=-2.634e+03;SOR=0.770;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,133:133:99:3986,286,0 1 246940179 rs3795464 G A 4342.77 PASS AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-2.202e+03;SOR=1.049;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,135:135:99:4371,325,0 1 246940182 rs3795463 C A 4387.77 PASS AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-2.220e+03;SOR=1.043;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,137:137:99:4416,328,0 1 246940442 rs3795462 T C 1124.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.32;SB=-5.380e+02;SOR=0.818;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:90:1153,90,0 1 246940826 rs4926454 G C 516.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=40.48;SB=0.00;SOR=5.421;VQSLOD=8.44;culprit=QD GT:AD:DP:GQ:PL 1/1:0,14:14:42:545,42,0 1 247058138 . C T 163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.047;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.82;ReadPosRankSum=-1.165;SB=-8.900e+01;SOR=0.648;VQSLOD=7.73;culprit=QD GT:AD:DP:GQ:PL 0/1:16,8:24:99:192,0,367 1 247067139 . C CA 67.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.42;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.34;RPA=17,18;RU=A;ReadPosRankSum=-0.460;SB=-7.894e+00;SOR=0.247;STR;VQSLOD=8.88;culprit=QD GT:AD:DP:GQ:PL 0/1:21,8:32:99:105,0,335 1 247091604 rs35687457 CA C 160.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;DB;DP=20;ExcessHet=3.0103;FS=12.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.04;RPA=21,20;RU=A;ReadPosRankSum=0.454;SB=-9.500e+01;SOR=0.020;STR;VQSLOD=4.38;culprit=FS GT:AD:DP:GQ:PL 0/1:6,14:20:48:198,0,48 1 247129945 rs1779985 A G 176.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-0.977;SB=0.00;SOR=0.569;VQSLOD=10.31;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:205,0,223 1 247150740 rs3749427 T C 948.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.90;SB=-5.920e+02;SOR=0.941;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:69:977,69,0 1 247151557 rs2642992 A G 1294.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.37;SB=-3.260e+02;SOR=2.670;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:96:1323,96,0 1 247162658 rs2642973 C T 7587.77 PASS AC=2;AF=1.00;AN=2;DB;DP=241;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-3.459e+03;SOR=1.307;VQSLOD=4.15;culprit=DP GT:AD:DP:GQ:PL 1/1:0,241:241:99:7616,557,0 1 247267274 rs4925692 C A 396.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.627;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.305;HaplotypeScore=1.9325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-1.542;SB=-8.400e+01;SOR=1.445;VQSLOD=6.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,14:36:99:425,0,591 1 247267668 rs2270616 G T 375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=-1.521;SB=-3.504e+01;SOR=0.990;VQSLOD=10.19;culprit=FS GT:AD:DP:GQ:PL 0/1:10,13:23:99:404,0,320 1 247286936 rs12094489 G A 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.57;MQ0=0;MQRankSum=-0.749;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.001;SB=0.00;SOR=0.836;VQSLOD=3.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,7:13:99:202,0,202 1 247287269 rs78802037 T C 94.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.950;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-0.158;SB=-3.100e+01;SOR=0.382;VQSLOD=8.04;culprit=QD GT:AD:DP:GQ:PL 0/1:12,5:17:99:123,0,360 1 247322298 rs6675536 G T 276.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.084;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=0.312;SB=-1.850e+02;SOR=0.722;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:16,14:30:99:305,0,456 1 247323260 rs9793102 C A 444.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=8.900;HaplotypeScore=13.9064;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=-0.692;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=1.184;SB=-1.831e+02;SOR=0.042;VQSLOD=0.264;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,19:30:99:473,0,306 1 247347069 rs12145369 G C 416.31 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=8.451;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.74;ReadPosRankSum=-1.612;SB=-3.101e+01;SOR=3.750;VQSLOD=4.00;culprit=FS GT:AD:DP:GQ:PL 0/1:1,13:14:1:442,0,1 1 247347715 rs6660243 C G 255.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.67;ReadPosRankSum=0.297;SB=-1.470e+02;SOR=0.892;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:4,9:13:93:284,0,93 1 247347828 rs6660351 C T 350.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.044;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.70;ReadPosRankSum=-0.336;SB=-1.650e+02;SOR=1.022;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:7,14:21:99:379,0,233 1 247347971 rs6684181 G A 417.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.483;SB=-2.500e+02;SOR=0.693;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:18,16:34:99:446,0,424 1 247348189 rs3738443 C T 158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.612;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=1.337;SB=-1.050e+02;SOR=0.593;VQSLOD=10.02;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:187,0,135 1 247348586 rs3820508 G A 245.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.753;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=0.516;SB=-1.250e+02;SOR=0.653;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:274,0,173 1 247348621 rs3820509 G C 145.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=-0.677;SB=-6.600e+01;SOR=0.551;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:174,0,291 1 247363412 . A G 100.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.387;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-0.148;SB=-5.400e+01;SOR=0.934;VQSLOD=7.68;culprit=QD GT:AD:DP:GQ:PL 0/1:13,5:18:99:129,0,333 1 247419509 rs1778540 T C 1026.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-4.540e+02;SOR=1.675;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:75:1055,75,0 1 247419664 rs1778541 C T 1559.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-9.130e+02;SOR=0.900;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1588,117,0 1 247485932 rs10924984 A G 1270.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=-5.660e+02;SOR=1.662;VQSLOD=7.04;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,44:44:99:1299,99,0 1 247486678 rs7540329 T C 1123.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.81;SB=-3.650e+02;SOR=2.362;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:90:1152,90,0 1 247582461 rs368835809 TATA T 590.73 PASS AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=35.37;SB=-5.876e+01;SOR=3.912;VQSLOD=5.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:16:40:628,40,0 1 247582466 rs4998423 A T 444.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=28.9952;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.21;SB=-4.176e+01;SOR=3.767;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:473,36,0 1 247587065 rs3806266 G A 131.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-1.355;SB=0.00;SOR=0.446;VQSLOD=10.04;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:160,0,219 1 247587477 rs3806268 G A 5310.77 PASS AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-3.091e+03;SOR=0.729;VQSLOD=5.90;culprit=DP GT:AD:DP:GQ:PL 1/1:0,167:167:99:5339,403,0 1 247587531 rs4925543 A G 4712.77 PASS AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-2.865e+03;SOR=0.720;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,150:150:99:4741,352,0 1 247589118 rs140014493 C G 157.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.86;ReadPosRankSum=-0.350;SB=-2.701e+01;SOR=0.765;VQSLOD=9.15;culprit=QD GT:AD:DP:GQ:PL 0/1:17,6:23:99:186,0,478 1 247597329 rs12124866 C T 521.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.14;SB=0.00;SOR=5.421;VQSLOD=4.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:550,42,0 1 247597365 rs10925022 G A 1809.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.15;SB=-1.971e+02;SOR=4.215;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1838,141,0 1 247597656 rs3835304 TG T 2601.73 PASS AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;RPA=4,3;RU=G;SB=-4.710e+02;SOR=2.973;STR;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:71:99:2639,202,0 1 247599232 rs10754557 G A 959.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.28;SB=-1.613e+02;SOR=3.258;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:75:988,75,0 1 247607642 rs12130711 C T 538.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.677;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=5.519;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-1.580;SB=-2.450e+02;SOR=0.163;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:21,22:43:99:567,0,708 1 247608167 rs45624634 C A 441.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.681;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=6.532;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=0.680;SB=-9.732e-01;SOR=2.712;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 0/1:13,14:27:99:470,0,425 1 247614693 rs6695302 C T 5123.77 PASS AC=2;AF=1.00;AN=2;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=-2.901e+03;SOR=0.804;VQSLOD=5.57;culprit=DP GT:AD:DP:GQ:PL 1/1:0,169:170:99:5152,388,0 1 247614896 rs11583410 A C 4444.77 PASS AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.46;SB=-2.371e+03;SOR=0.912;VQSLOD=6.61;culprit=DP GT:AD:DP:GQ:PL 1/1:0,129:129:99:4473,322,0 1 247654993 rs10925061 T C 1623.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.026;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=4.574;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=-1.006;SB=-1.031e+03;SOR=0.688;VQSLOD=5.08;culprit=FS GT:AD:DP:GQ:PL 0/1:50,63:113:99:1652,0,1337 1 247655275 rs12141850 T C 2134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.509;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=2.247;HaplotypeScore=17.2869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-0.034;SB=-1.352e+03;SOR=0.406;VQSLOD=6.33;culprit=DP GT:AD:DP:GQ:PL 0/1:61,84:146:99:2163,0,1367 1 247655516 rs12123109 C T 166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.268;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-0.501;SB=-1.765e+00;SOR=1.402;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:195,0,244 1 247690320 rs2141543 C T 1186.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.236;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=0.459;SB=-6.440e+02;SOR=0.814;VQSLOD=7.33;culprit=QD GT:AD:DP:GQ:PL 0/1:86,51:137:99:1215,0,2400 1 247695427 rs34220133 C G 2555.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.624;DB;DP=184;Dels=0.00;ExcessHet=3.0103;FS=1.876;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-0.108;SB=-1.201e+03;SOR=0.907;VQSLOD=6.92;culprit=DP GT:AD:DP:GQ:PL 0/1:89,95:184:99:2584,0,2465 1 247695612 rs6657127 G A 4915.77 PASS AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.67;SB=-1.734e+03;SOR=1.778;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,146:146:99:4944,367,0 1 247695756 rs6697472 T C 1898.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.14;SB=-1.096e+03;SOR=1.010;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1927,144,0 1 247728962 rs1151694 C T 401.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.98;SB=0.00;SOR=4.977;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:430,33,0 1 247752019 rs1151687 G C 4507.77 PASS AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.64;SB=-2.445e+03;SOR=0.957;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,134:134:99:4536,328,0 1 247752650 rs35280339 AT A 663.73 PASS AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;RPA=10,9;RU=T;SB=-5.897e+01;SOR=4.332;STR;VQSLOD=1.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:31:81:701,81,0 1 247768736 rs71798723 AGTGAAAAATGAATAGTTTAGG A 2509.73 PASS AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.88;SB=-6.865e+02;SOR=1.981;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:14:36:2547,36,0 1 247769592 rs1151683 C T 3826.77 PASS AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=-2.347e+03;SOR=0.725;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,124:124:99:3855,292,0 1 247835352 rs1151641 C T 700.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.04;SB=0.00;SOR=5.994;VQSLOD=8.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:729,57,0 1 247835674 rs28446289 G A 4194.77 PASS AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.78;SB=-2.612e+03;SOR=0.723;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,132:132:99:4223,307,0 1 247835908 rs28556931 T A 4798.77 PASS AC=2;AF=1.00;AN=2;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.79;SB=-2.684e+03;SOR=0.780;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,142:142:99:4827,355,0 1 247836008 rs28555391 G A 3932.77 PASS AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.97;SB=-2.268e+03;SOR=0.742;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,123:123:99:3961,301,0 1 247836207 rs28711149 T A 4242.77 PASS AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-2.003e+03;SOR=1.204;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,137:137:99:4271,328,0 1 247836494 rs28607552 T A 634.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.74;SB=0.00;SOR=5.784;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:663,51,0 1 247875415 rs2282316 A G 2939.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.153;DB;DP=217;Dels=0.00;ExcessHet=3.0103;FS=1.682;HaplotypeScore=2.6566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=0.845;SB=-1.835e+03;SOR=0.640;VQSLOD=7.29;culprit=DP GT:AD:DP:GQ:PL 0/1:106,110:217:99:2968,0,2609 1 247875608 rs6587382 C G 1912.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.893;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=0.173;SB=-1.075e+03;SOR=0.662;VQSLOD=7.59;culprit=DP GT:AD:DP:GQ:PL 0/1:87,72:159:99:1941,0,2440 1 247875689 rs7512807 A G 1759.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.232;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.678;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.028;SB=-8.720e+02;SOR=0.765;VQSLOD=8.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,66:122:99:1788,0,1478 1 247921100 rs1552812 T G 963.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=0.141;SB=-5.130e+02;SOR=0.696;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 0/1:37,35:72:99:992,0,1092 1 247921352 rs1552813 C T 2153.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.65;SB=-1.077e+03;SOR=0.966;VQSLOD=7.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2182,163,0 1 247921717 rs10888359 C A 821.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.87;SB=-1.911e+02;SOR=2.584;VQSLOD=7.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:63:850,63,0 1 247978087 rs10888248 G A 1759.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-5.160e+02;SOR=2.387;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1788,132,0 1 247978319 rs6695283 A G 4040.77 PASS AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=-2.272e+03;SOR=1.066;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,136:136:99:4069,292,0 1 247978541 rs35979231 AAGG A 5470.73 PASS AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-2.500e+03;SOR=0.855;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:93:99:5508,274,0 1 247978996 rs10888249 A G 1620.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=-8.140e+02;SOR=1.329;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1649,117,0 1 247990932 rs12125756 G A 324.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.06;SB=-1.473e+02;SOR=1.022;VQSLOD=5.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:353,27,0 1 247991609 rs4925724 G A 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=1.597;SB=-1.050e+02;SOR=0.818;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:96:247,0,96 1 248004614 rs6667389 G A 3146.77 PASS AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.84;SB=-1.430e+03;SOR=1.240;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:93:99:3175,238,0 1 248004687 rs10888255 C G 3774.77 PASS AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.44;SB=-2.112e+03;SOR=0.941;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,124:124:99:3803,280,0 1 248004775 rs10888256 C T 3483.77 PASS AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3631;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.29;SB=-1.721e+03;SOR=1.169;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,115:115:99:3512,271,0 1 248004848 rs4607924 G C 3275.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=-1.670e+03;SOR=0.999;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:3304,241,0 1 248004877 rs10888257 C T 2794.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8648;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=-1.711e+03;SOR=0.693;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2823,208,0 1 248004884 rs1339845 T C 2796.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6551;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-1.715e+03;SOR=0.716;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2825,205,0 1 248005213 rs7522811 G C 2577.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-1.462e+03;SOR=1.065;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2606,187,0 1 248020556 rs11204523 G C 106.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=1.899;SB=-1.765e+00;SOR=1.112;VQSLOD=8.76;culprit=FS GT:AD:DP:GQ:PL 0/1:7,4:11:99:135,0,220 1 248023966 rs3737277 C T 621.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=3.594;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=-1.012;SB=-2.790e+02;SOR=1.179;VQSLOD=7.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,27:59:99:650,0,886 1 248024073 rs3737276 A C 235.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.421;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=-2.382;SB=-1.765e+00;SOR=1.329;VQSLOD=8.59;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:12,9:21:99:264,0,384 1 248039451 rs3811444 C T 1590.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=7.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=-0.909;SB=-7.350e+02;SOR=1.104;VQSLOD=4.69;culprit=FS GT:AD:DP:GQ:PL 0/1:58,58:116:99:1619,0,1560 1 248039713 rs3811445 A G 2308.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-1.178e+03;SOR=1.270;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2337,178,0 1 248058755 rs1337876 A G 451.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=0.00;SOR=5.136;VQSLOD=8.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:480,36,0 1 248058761 rs11204543 G C 456.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=0.00;SOR=5.136;VQSLOD=7.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:485,36,0 1 248058797 rs1856248 T G 713.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.51;SB=0.00;SOR=5.994;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:742,54,0 1 248058845 rs4500353 A C 1491.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.44;SB=-4.000e+02;SOR=2.448;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1520,111,0 1 248058879 rs6587387 A T 2119.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.86;SB=-9.050e+02;SOR=1.643;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2148,154,0 1 248059423 rs10888267 C T 1498.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=1.351;HaplotypeScore=3.7966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=0.208;SB=-8.480e+02;SOR=0.865;VQSLOD=7.72;culprit=DP GT:AD:DP:GQ:PL 0/1:78,61:139:99:1527,0,2098 1 248059456 rs12135078 G A 1682.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=5.134;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-1.598;SB=-8.630e+02;SOR=0.885;VQSLOD=5.40;culprit=FS GT:AD:DP:GQ:PL 0/1:75,62:137:99:1711,0,2039 1 248059476 rs12139390 A C 4161.77 PASS AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-2.374e+03;SOR=0.859;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,128:128:99:4190,319,0 1 248059703 rs11204545 T A 1211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.949;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.801;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=0.758;SB=-5.660e+02;SOR=0.569;VQSLOD=9.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,44:92:99:1240,0,1416 1 248059712 rs11204546 T C 1077.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.812;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=1.803;SB=-5.460e+02;SOR=0.567;VQSLOD=9.47;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:49,40:89:99:1106,0,1356 1 248059856 rs10888268 T C 1067.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.066;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=0.530;SB=-7.030e+02;SOR=0.655;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:46,43:90:99:1096,0,1141 1 248060029 rs10732831 A G 775.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.73;SB=-1.195e+02;SOR=3.352;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:804,60,0 1 248084222 rs12048237 T C 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-0.925;SB=-3.300e+01;SOR=1.179;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:13,12:25:99:295,0,382 1 248085124 rs4590708 G A 1257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.153;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.913;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=55.51;MQ0=2;MQRankSum=2.911;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=0.470;SB=-5.190e+02;SOR=0.486;VQSLOD=0.086;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,48:86:99:1286,0,951 1 248085341 rs4925773 T A 413.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.349;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.790;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.39;ReadPosRankSum=0.590;SB=-2.004e+01;SOR=1.022;VQSLOD=6.22;culprit=QD GT:AD:DP:GQ:PL 0/1:40,16:56:99:442,0,1246 1 248112627 rs4925787 T C 5039.77 PASS AC=2;AF=1.00;AN=2;DB;DP=174;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5768;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.96;SB=-2.976e+03;SOR=0.693;VQSLOD=5.52;culprit=DP GT:AD:DP:GQ:PL 1/1:0,174:174:99:5068,388,0 1 248112763 rs4925790 G A 3760.77 PASS AC=2;AF=1.00;AN=2;DB;DP=142;Dels=0.01;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=2;POSITIVE_TRAIN_SITE;QD=27.06;SB=-1.879e+03;SOR=1.204;VQSLOD=4.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,139:140:99:3789,292,0 1 248112771 rs4925791 C T 4112.77 PASS AC=2;AF=1.00;AN=2;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=2;POSITIVE_TRAIN_SITE;QD=26.88;SB=-2.016e+03;SOR=1.345;VQSLOD=5.20;culprit=DP GT:AD:DP:GQ:PL 1/1:0,153:153:99:4141,310,0 1 248112809 rs4925583 A G 3577.77 PASS AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8313;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.62;SB=-1.869e+03;SOR=1.311;VQSLOD=5.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,125:125:99:3606,265,0 1 248112836 rs4925792 A G 3447.77 PASS AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-1.577e+03;SOR=1.282;VQSLOD=5.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,113:113:99:3476,262,0 1 248113026 rs10888281 T A 2845.77 PASS AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-1.572e+03;SOR=0.758;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:93:99:2874,214,0 1 248113040 rs10888282 A G 3182.76 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-1.827e+03;SOR=0.863;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:3211,232,0 1 248113206 rs10888283 C G 1219.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-1.573e+02;SOR=3.556;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1248,99,0 1 248129240 rs4478844 G A 3999.77 PASS AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-2.328e+03;SOR=0.709;VQSLOD=5.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,123:123:99:4028,301,0 1 248138520 rs4268383 A G 422.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-1.961e+02;SOR=1.179;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:451,36,0 1 248138531 rs4268384 A G 440.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-1.225e+02;SOR=2.303;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:469,39,0 1 248138577 rs6689666 C A 671.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-2.740e+02;SOR=1.609;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:51:700,51,0 1 248138588 rs6680172 G A 706.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-2.740e+02;SOR=1.708;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:54:735,54,0 1 248138642 rs6694546 A G 855.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;SB=-5.630e+02;SOR=0.826;VQSLOD=5.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:66:884,66,0 1 248138848 rs12042554 G C 1174.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=-7.400e+02;SOR=0.798;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:87:1203,87,0 1 248343543 rs9435919 C T 2754.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.19;SB=-1.206e+03;SOR=1.248;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2783,205,0 1 248343945 rs4244171 C G 4618.77 PASS AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.00;SB=-2.724e+03;SOR=0.706;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,149:149:99:4647,337,0 1 248343990 rs4916104 T C 4048.77 PASS AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.12;SB=-2.469e+03;SOR=0.937;VQSLOD=5.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,144:144:99:4077,304,0 1 248366702 rs4916112 G A 2090.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.322;DB;DP=172;Dels=0.00;ExcessHet=3.0103;FS=2.720;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-0.610;SB=-1.152e+03;SOR=0.492;VQSLOD=6.30;culprit=DP GT:AD:DP:GQ:PL 0/1:93,79:172:99:2119,0,2443 1 248366792 rs12562957 T C 2741.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;DB;DP=195;Dels=0.00;ExcessHet=3.0103;FS=1.747;HaplotypeScore=2.5787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=0.973;SB=-1.607e+03;SOR=0.826;VQSLOD=7.06;culprit=DP GT:AD:DP:GQ:PL 0/1:90,105:195:99:2770,0,2157 1 248367415 rs4916082 C T 889.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.78;SB=-1.443e+02;SOR=3.258;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:918,72,0 1 248402758 rs6666148 C T 2020.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-8.800e+02;SOR=1.473;VQSLOD=6.98;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,66:66:99:2049,150,0 1 248436611 rs10888338 G A 1529.96 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.393;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=5.299;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=46.06;MQ0=6;MQRankSum=2.396;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.17;ReadPosRankSum=0.903;SB=-7.090e+02;SOR=0.091;VQSLOD=0.293;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,63:69:5:1557,0,5 1 248436616 rs71538179 A G 1822.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=5;POSITIVE_TRAIN_SITE;QD=26.81;SB=-7.240e+02;SOR=1.685;VQSLOD=5.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:1851,144,0 1 248436805 rs28399248 T G 1625.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.699;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.033;HaplotypeScore=11.6337;MLEAC=1;MLEAF=0.500;MQ=40.91;MQ0=1;MQRankSum=3.148;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=-2.315;SB=-8.450e+02;SOR=0.729;VQSLOD=0.043;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,61:72:37:1654,0,37 1 248437210 rs28407436 T C 824.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.418;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=4.462;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.41;MQ0=0;MQRankSum=-1.543;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=-1.242;SB=-1.870e+02;SOR=1.457;VQSLOD=0.075;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,29:53:99:853,0,538 1 248437247 rs144591821 GCCCTAA G 2685.73 PASS AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.62;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.93;SB=-2.275e+02;SOR=3.912;VQSLOD=5.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:35:90:2723,90,0 1 248457979 rs6667171 C A 5267.77 PASS AC=2;AF=1.00;AN=2;DB;DP=185;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.47;SB=-3.114e+03;SOR=0.971;VQSLOD=5.16;culprit=DP GT:AD:DP:GQ:PL 1/1:0,185:185:99:5296,376,0 1 248458676 rs6678138 T C 1874.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=1;QD=31.78;SB=-4.670e+02;SOR=2.303;VQSLOD=4.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1903,144,0 1 248458689 rs6674940 A G 2210.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=1;POSITIVE_TRAIN_SITE;QD=31.58;SB=-7.760e+02;SOR=1.897;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2239,166,0 1 248458718 rs79635253 T C 1407.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.343;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.875;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=56.23;MQ0=1;MQRankSum=1.343;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=0.090;SB=-5.870e+02;SOR=1.022;VQSLOD=0.229;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,53:89:99:1436,0,766 1 248458974 rs11204626 T A 1385.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-3.200e+02;SOR=2.780;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1414,105,0 1 248486895 rs4244184 G T 2880.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.29;SB=-5.550e+02;SOR=3.153;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2909,214,0 1 248486913 rs4244185 A G 3072.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-7.210e+02;SOR=2.765;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:3101,247,0 1 248487338 rs4916130 C A 5372.77 PASS AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.79;SB=-2.848e+03;SOR=0.897;VQSLOD=5.81;culprit=DP GT:AD:DP:GQ:PL 1/1:0,159:159:99:5401,406,0 1 248487638 rs7555310 A G 2660.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-7.820e+02;SOR=2.030;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2689,196,0 1 248487768 rs7555424 A G 2542.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.02;SB=-1.121e+03;SOR=1.300;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2571,187,0 1 248512064 rs28372410 T G 1379.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-5.350e+02;SOR=1.828;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1408,102,0 1 248512094 rs28728105 C T 1713.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-7.890e+02;SOR=1.287;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1742,129,0 1 248512637 rs2039824 C T 3584.77 PASS AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.14;SB=-1.974e+03;SOR=0.963;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,123:123:99:3613,274,0 1 248512749 rs28377739 G A 2656.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.63;SB=-1.426e+03;SOR=1.013;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2685,196,0 1 248512767 rs28545014 G T 2128.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.96;SB=-1.243e+03;SOR=1.220;VQSLOD=4.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2157,163,0 1 248513023 rs28607995 G A 489.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=-6.997e+01;SOR=2.985;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:518,39,0 1 248525638 rs34079073 CA C 1844.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.849;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQ0=0;MQRankSum=0.956;POSITIVE_TRAIN_SITE;QD=21.45;ReadPosRankSum=-1.026;SB=-8.490e+02;SOR=0.669;VQSLOD=3.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,46:87:99:1882,0,1726 1 248550976 rs6587467 T G 1279.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.517;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=4.689;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=-0.330;SB=-8.110e+02;SOR=0.520;VQSLOD=7.98;culprit=FS GT:AD:DP:GQ:PL 0/1:55,54:109:99:1308,0,1296 1 248569282 rs28667896 A G 170.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.574;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=-0.201;SB=-1.765e+00;SOR=0.963;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 0/1:11,6:17:99:199,0,328 1 248569369 rs28599722 A G 795.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.430;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=2.125;HaplotypeScore=1.8663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=-0.181;SB=-2.880e+02;SOR=1.179;VQSLOD=7.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,35:75:99:824,0,978 1 248570440 rs6695780 G A 3021.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=-1.297e+03;SOR=1.493;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:3050,223,0 1 248570552 . T G 928.77 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.9962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.17;SB=-2.471e+02;SOR=2.468;VQSLOD=5.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:69:957,69,0 1 248570553 rs377616172 A AGTTAT 1173.73 PASS AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.42;RPA=1,2;RU=GTTAT;SB=-2.355e+02;SOR=2.584;STR;VQSLOD=5.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:27:48:1211,48,0 1 248604365 rs143338137 A G 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.548;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.55;MQ0=0;MQRankSum=0.709;QD=15.71;ReadPosRankSum=1.158;SB=0.00;SOR=0.859;VQSLOD=2.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,6:11:99:201,0,146 1 248604452 rs78822516 A G 227.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.017;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.46;MQ0=0;MQRankSum=-1.752;QD=13.40;ReadPosRankSum=0.752;SB=-6.900e+01;SOR=0.446;VQSLOD=2.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,9:17:99:256,0,220 1 248604454 rs113331655 CAT C 341.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.46;MQ0=0;MQRankSum=1.480;POSITIVE_TRAIN_SITE;QD=21.36;RPA=2,1;RU=AT;ReadPosRankSum=-0.563;SB=-9.500e+01;SOR=0.693;STR;VQSLOD=3.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,8:16:99:379,0,387 1 248604465 rs76925977 C T 544.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.4641;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=30.26;SB=-1.603e+02;SOR=1.493;VQSLOD=5.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:573,45,0 1 248605540 rs71642449 G C 105.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.015;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.33;MQ0=0;MQRankSum=0.181;POSITIVE_TRAIN_SITE;QD=5.04;ReadPosRankSum=-1.032;SB=0.00;SOR=0.117;VQSLOD=3.02;culprit=QD GT:AD:DP:GQ:PL 0/1:16,5:21:99:134,0,561 1 248617181 . C T 528.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.292;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=45.10;MQ0=3;MQRankSum=-3.326;QD=13.22;ReadPosRankSum=-1.733;SB=-1.765e+00;SOR=1.609;VQSLOD=0.577;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,21:40:99:557,0,457 1 248685253 rs9727474 T C 3010.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-1.592e+03;SOR=0.823;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:3039,232,0 1 248685719 rs9330305 A T 1899.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.369;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=4.466;HaplotypeScore=2.8315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=0.111;SB=-1.115e+03;SOR=0.447;VQSLOD=8.82;culprit=FS GT:AD:DP:GQ:PL 0/1:51,67:118:99:1928,0,1314 1 248737348 rs61833442 G A 3002.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.377;DB;DP=176;Dels=0.00;ExcessHet=3.0103;FS=2.156;HaplotypeScore=46.6146;MLEAC=1;MLEAF=0.500;MQ=49.19;MQ0=11;MQRankSum=-1.988;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.06;ReadPosRankSum=-0.589;SB=-1.295e+03;SOR=0.530;VQSLOD=0.191;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,120:176:99:3031,0,1214 1 248738183 rs1782199 G T 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.523;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.40;MQ0=2;MQRankSum=-4.119;QD=6.56;ReadPosRankSum=-1.669;SB=-9.732e-01;SOR=1.402;VQSLOD=0.797;culprit=QD GT:AD:DP:GQ:PL 0/1:13,8:21:99:166,0,401 1 248789454 rs1892441 G C 1695.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.61;SB=-6.280e+02;SOR=1.609;VQSLOD=5.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1724,126,0 1 248789504 rs1892442 T C 2988.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.50;SB=-1.180e+03;SOR=1.562;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:3017,223,0 1 248790075 rs1892443 A G 2900.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-1.655e+03;SOR=0.866;VQSLOD=5.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:2929,220,0 1 248801592 rs78622116 C T 1398.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.325;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=4.536;HaplotypeScore=49.8191;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=27;MQRankSum=1.003;POSITIVE_TRAIN_SITE;QD=17.27;ReadPosRankSum=1.573;SB=-5.971e+02;SOR=1.345;VQSLOD=0.079;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:22,59:81:75:1427,75,0 1 248802763 rs77518069 C T 64.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.36;MQ0=0;MQRankSum=-1.668;QD=6.48;ReadPosRankSum=-0.511;SB=0.00;SOR=0.412;VQSLOD=2.14;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:93:93,0,205 1 248813135 rs4916153 G A 436.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=0.00;SOR=5.283;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:465,39,0 1 248814080 rs1782242 A C 2739.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.744;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9132;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=2;MQRankSum=1.017;POSITIVE_TRAIN_SITE;QD=24.46;ReadPosRankSum=1.339;SB=-1.748e+03;SOR=0.405;VQSLOD=2.41;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,111:112:99:2768,191,0 1 248814126 rs28418327 G A 557.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.865;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.22;MQ0=0;MQRankSum=-0.593;POSITIVE_TRAIN_SITE;QD=5.47;ReadPosRankSum=0.330;SB=-2.190e+02;SOR=0.716;VQSLOD=1.65;culprit=QD GT:AD:DP:GQ:PL 0/1:73,29:102:99:586,0,1737 1 248844959 rs55871516 T C 1531.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.537;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.61;ReadPosRankSum=0.112;SB=-7.060e+02;SOR=0.747;VQSLOD=8.60;culprit=FS GT:AD:DP:GQ:PL 0/1:37,50:87:99:1560,0,970 1 248845097 rs2000390 C T 2778.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.046;DB;DP=224;Dels=0.00;ExcessHet=3.0103;FS=6.561;HaplotypeScore=2.9971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=-0.922;SB=-1.210e+03;SOR=1.089;VQSLOD=5.23;culprit=DP GT:AD:DP:GQ:PL 0/1:113,111:224:99:2807,0,2895 1 248845356 rs41311583 G T 1188.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.463;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=6.718;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.523;SB=-7.110e+02;SOR=0.290;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 0/1:51,47:98:99:1217,0,1446 1 248845411 rs11485825 G A 999.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.896;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-2.110;SB=-4.160e+02;SOR=0.671;VQSLOD=8.54;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:36,38:74:99:1028,0,1021 1 248845458 rs4509608 C T 701.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=0.341;SB=-4.010e+02;SOR=0.513;VQSLOD=10.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,30:59:99:730,0,787 1 248845471 rs4575113 T C 1482.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.51;SB=-9.270e+02;SOR=0.693;VQSLOD=5.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1511,114,0 1 248845499 rs4462184 A G 1483.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.28;SB=-7.650e+02;SOR=1.007;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1512,111,0 1 249107414 rs11205412 T C 300.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.543;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=1.830;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=0.465;SB=-1.820e+02;SOR=0.368;VQSLOD=9.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,12:19:99:329,0,195 1 249108640 rs12031808 C T 840.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.194;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=2.119;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=1.632;SB=-2.830e+02;SOR=1.041;VQSLOD=7.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,30:70:99:869,0,1004 1 249109034 rs10888590 A G 680.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.729;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.27;ReadPosRankSum=0.278;SB=-1.040e+02;SOR=1.109;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:11,21:32:99:709,0,291 1 249110906 rs4926508 G C 1197.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.998;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=5.906;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=0.806;SB=-5.580e+02;SOR=0.927;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 0/1:37,41:78:99:1226,0,976 1 249120684 rs11205415 T G 1904.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.619;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.370;SB=-9.770e+02;SOR=0.650;VQSLOD=8.65;culprit=FS GT:AD:DP:GQ:PL 0/1:74,72:146:99:1933,0,1925 1 249145072 rs66864206 C CA 1354.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.937;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=1.045;SB=-3.960e+02;SOR=0.566;VQSLOD=8.90;culprit=FS GT:AD:DP:GQ:PL 0/1:28,32:61:99:1392,0,1095 1 249148399 rs12022223 C T 249.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.969;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-0.981;SB=-7.897e+01;SOR=0.086;VQSLOD=9.03;culprit=SOR GT:AD:DP:GQ:PL 0/1:9,10:19:99:278,0,280 1 249149486 rs12135449 T C 773.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.521;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.429;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=1.720;SB=-2.490e+02;SOR=0.384;VQSLOD=9.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,27:42:99:802,0,408 2 41404 rs10173732 G A 262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.296;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=1.260;SB=-2.901e+01;SOR=0.264;VQSLOD=9.76;culprit=QD GT:AD:DP:GQ:PL 0/1:20,11:31:99:291,0,725 2 45895 rs4241318 A G 1768.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.68;SB=-6.860e+02;SOR=1.565;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1797,135,0 2 173150 rs446955 T A 90.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=-0.536;SB=-1.040e+02;SOR=0.527;VQSLOD=10.12;culprit=QD GT:AD:DP:GQ:PL 0/1:3,7:10:69:119,0,69 2 233416 rs300756 G A 429.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=0.326;SB=0.00;SOR=1.230;VQSLOD=10.24;culprit=FS GT:AD:DP:GQ:PL 0/1:8,13:21:99:458,0,250 2 264895 rs4854300 G C 2193.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.64;SB=-2.501e+02;SOR=4.066;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:2222,163,0 2 273070 rs12714403 A G 1246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=13.086;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.113;SB=-3.720e+02;SOR=1.845;VQSLOD=5.03;culprit=FS GT:AD:DP:GQ:PL 0/1:67,50:117:99:1275,0,1627 2 283231 . A AT 275.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;DP=40;ExcessHet=3.0103;FS=5.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.36;RPA=7,8;RU=T;ReadPosRankSum=0.036;SB=-7.509e+01;SOR=0.095;STR;VQSLOD=9.25;culprit=QD GT:AD:DP:GQ:PL 0/1:19,14:40:99:313,0,426 2 672976 rs58078949 A G 269.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.780;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=-0.136;SB=-8.200e+01;SOR=0.818;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:298,0,162 2 676457 rs2293082 G C 594.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.384;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=6.872;HaplotypeScore=2.7460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=-2.508;SB=-1.881e+02;SOR=0.055;VQSLOD=8.38;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:19,24:43:99:623,0,515 2 676478 rs71693768 T TGTAA 1622.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;DB;DP=50;ExcessHet=3.0103;FS=4.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.34;ReadPosRankSum=0.301;SB=-5.170e+02;SOR=0.188;VQSLOD=7.61;culprit=FS GT:AD:DP:GQ:PL 0/1:25,25:50:99:1660,0,1640 2 676782 rs73153267 C A 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-0.702;SB=0.00;SOR=0.551;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:166,0,214 2 677213 rs3749138 G A 120.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.123;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.29;ReadPosRankSum=0.281;SB=-9.732e-01;SOR=2.030;VQSLOD=5.52;culprit=QD GT:AD:DP:GQ:PL 0/1:8,5:13:99:149,0,225 2 677295 rs3210390 C T 534.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.605;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-0.395;SB=-1.380e+02;SOR=0.965;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:27,21:48:99:563,0,753 2 1079143 rs4971431 A G 114.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.109;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.96;ReadPosRankSum=1.814;SB=-6.300e+01;SOR=0.368;VQSLOD=8.56;culprit=QD GT:AD:DP:GQ:PL 0/1:22,7:29:99:143,0,621 2 1079320 rs4971432 C T 469.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.21;ReadPosRankSum=0.156;SB=-1.640e+02;SOR=0.784;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:32,19:51:99:498,0,804 2 1093965 rs11127460 G A 1144.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.938;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=12.125;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=0.462;SB=-5.860e+02;SOR=0.668;VQSLOD=5.38;culprit=FS GT:AD:DP:GQ:PL 0/1:49,46:97:99:1173,0,1306 2 1133188 rs370536736 G GCACA 860.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.99;RPA=7,9;RU=CA;ReadPosRankSum=1.775;SB=-1.764e+00;SOR=1.220;STR;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:22,16:39:99:898,0,1265 2 1133367 rs79642551 G A 1384.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.719;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=0.353;SB=-6.810e+02;SOR=0.618;VQSLOD=9.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,56:115:99:1413,0,1506 2 1241592 rs146197111 C T 810.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.78;SB=-1.195e+02;SOR=3.442;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:63:839,63,0 2 1250878 rs28622255 T C 1109.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6203;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.07;SB=-4.090e+02;SOR=2.038;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:42:84:1138,84,0 2 1320143 rs4927635 C T 1057.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.849;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=1.696;SB=-6.500e+02;SOR=0.512;VQSLOD=9.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,42:80:99:1086,0,961 2 1320300 rs35466197 A G 360.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.178;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.222;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=-1.314;SB=-9.732e-01;SOR=2.636;VQSLOD=5.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,11:22:99:389,0,308 2 1320304 . C A 252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.780;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.245;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.04;ReadPosRankSum=-1.937;SB=-9.732e-01;SOR=2.833;VQSLOD=3.86;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:10,11:21:99:281,0,289 2 1320305 . G C 349.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;DP=21;Dels=0.00;ExcessHet=3.0103;FS=6.690;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.66;ReadPosRankSum=-1.937;SB=-9.732e-01;SOR=2.833;VQSLOD=3.92;culprit=FS GT:AD:DP:GQ:PL 0/1:10,11:21:99:378,0,304 2 1426621 rs2276702 A G 633.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.36;SB=-3.677e+01;SOR=4.514;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:662,54,0 2 1426787 rs2276701 G A 1662.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;DB;DP=172;Dels=0.00;ExcessHet=3.0103;FS=4.569;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=-1.040;SB=-1.001e+03;SOR=0.417;VQSLOD=6.36;culprit=DP GT:AD:DP:GQ:PL 0/1:99,73:172:99:1691,0,2465 2 1437163 rs1473936 A C 307.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.483;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.960;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.33;ReadPosRankSum=1.405;SB=-1.807e+01;SOR=1.702;VQSLOD=5.61;culprit=QD GT:AD:DP:GQ:PL 0/1:21,12:33:99:336,0,559 2 1437410 rs4927578 C T 317.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.770;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=-0.107;SB=-6.000e+01;SOR=0.509;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:9,12:21:99:346,0,246 2 1440299 rs28909386 A G 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.632;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.48;ReadPosRankSum=0.776;SB=0.00;SOR=1.329;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:315,0,142 2 1442417 rs4425120 C T 267.94 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.79;ReadPosRankSum=-0.126;SB=-4.176e+01;SOR=1.802;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:1,9:10:14:296,0,14 2 1442476 rs1969248 T C 453.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.73;ReadPosRankSum=0.595;SB=-1.271e+02;SOR=0.627;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:6,17:23:99:482,0,150 2 1442551 rs3036132 ATTTT A 855.25 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;DB;DP=46;ExcessHet=3.0103;FS=4.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.92;RPA=17,13;RU=T;ReadPosRankSum=1.461;SB=-3.811e+02;SOR=0.180;STR;VQSLOD=8.24;culprit=SOR GT:AD:DP:GQ:PL 0/1:22,21:46:99:892,0,733 2 1457364 rs2070881 A G 2236.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-7.730e+02;SOR=2.049;VQSLOD=7.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2265,169,0 2 1459806 rs4927610 A G 642.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-1.155e+02;SOR=3.160;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:671,54,0 2 1460004 rs4927611 G T 763.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.753;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.930;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=0.542;SB=-4.210e+02;SOR=0.783;VQSLOD=7.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,30:67:99:792,0,1070 2 1460140 rs4927612 A G 537.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.221;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.139;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=-0.990;SB=-2.640e+02;SOR=0.914;VQSLOD=7.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,22:46:99:566,0,736 2 1460280 rs28910572 G T 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=7.160;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=0.977;SB=-9.732e-01;SOR=3.180;VQSLOD=5.38;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:246,0,136 2 1460297 rs4927579 C T 307.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.98;SB=-3.976e+01;SOR=3.442;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:336,27,0 2 1481155 rs2280132 G T 1035.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.615;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=8.420;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-0.765;SB=-2.440e+02;SOR=1.650;VQSLOD=5.53;culprit=FS GT:AD:DP:GQ:PL 0/1:40,37:77:99:1064,0,1150 2 1481231 rs2175977 G C 347.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.730;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=6.750;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=-0.018;SB=-1.340e+02;SOR=0.122;VQSLOD=8.62;culprit=FS GT:AD:DP:GQ:PL 0/1:22,12:34:99:376,0,724 2 1488668 rs6715129 T C 305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.84;ReadPosRankSum=-0.071;SB=-4.276e+01;SOR=0.693;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:4,10:14:99:334,0,114 2 1491381 rs6714887 C A 162.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=-0.525;SB=-4.276e+01;SOR=0.223;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:191,0,163 2 1491497 rs6727192 T C 893.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.564;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.17;MQ0=0;MQRankSum=1.032;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.564;SB=-8.400e+01;SOR=0.468;VQSLOD=3.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,31:62:99:922,0,953 2 1497442 rs9679267 A G 673.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.758;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=-1.696;SB=-1.670e+02;SOR=0.565;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 0/1:25,27:52:99:702,0,715 2 1497803 . C T 1030.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.225;DP=79;Dels=0.00;ExcessHet=3.0103;FS=9.617;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-0.276;SB=-1.420e+02;SOR=1.917;VQSLOD=4.27;culprit=FS GT:AD:DP:GQ:PL 0/1:43,36:79:99:1059,0,1106 2 1499728 rs2276704 C T 535.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.352;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.078;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-1.373;SB=-9.732e-01;SOR=2.124;VQSLOD=5.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,18:40:99:564,0,723 2 1499899 rs732608 C T 1804.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.448;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=0.561;SB=-1.158e+03;SOR=0.655;VQSLOD=7.76;culprit=FS GT:AD:DP:GQ:PL 0/1:80,72:152:99:1833,0,2009 2 1499927 rs732609 A C 1788.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.136;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-0.328;SB=-9.550e+02;SOR=0.663;VQSLOD=8.38;culprit=FS GT:AD:DP:GQ:PL 0/1:78,74:152:99:1817,0,1999 2 1500127 . C G 54.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.3302;MLEAC=1;MLEAF=0.500;MQ=56.89;MQ0=0;MQRankSum=-1.922;QD=4.98;ReadPosRankSum=1.299;SB=-9.732e-01;SOR=1.371;VQSLOD=1.32;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:83:83,0,186 2 1500665 rs867983 C T 426.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.566;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.554;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-0.072;SB=-9.600e+01;SOR=1.078;VQSLOD=7.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,15:33:99:455,0,570 2 1520676 rs1126799 T C 915.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.699;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=0.268;SB=-2.080e+02;SOR=0.780;VQSLOD=9.91;culprit=FS GT:AD:DP:GQ:PL 0/1:30,32:62:99:944,0,832 2 1544147 rs12619427 A T 406.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.05;SB=-1.135e+02;SOR=2.303;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:33:435,33,0 2 1544196 rs28915675 A AAAT 1364.73 PASS AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=38.85;RPA=1,2;RU=AAT;SB=-4.290e+02;SOR=1.893;STR;VQSLOD=4.91;culprit=QD GT:AD:DP:GQ:PL 1/1:0,25:26:75:1402,75,0 2 1544617 rs12615819 G A 1276.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.558;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=1.135;SB=-5.880e+02;SOR=0.850;VQSLOD=7.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,48:99:99:1305,0,1220 2 1546361 rs28915689 G T 742.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.897;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=0.145;SB=-2.760e+02;SOR=0.701;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:33,30:63:99:771,0,899 2 1642537 rs6729142 T C 1626.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.05;SB=-3.876e+01;SOR=6.091;VQSLOD=4.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1655,123,0 2 1642539 rs6742040 C T 1644.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.00;SB=-7.597e+01;SOR=5.464;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1673,135,0 2 1642545 rs6742039 C G 1853.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.33;SB=-1.195e+02;SOR=5.136;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1882,153,0 2 1647171 rs6730800 T C 5350.77 PASS AC=2;AF=1.00;AN=2;DB;DP=175;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-2.210e+03;SOR=1.735;VQSLOD=6.27;culprit=DP GT:AD:DP:GQ:PL 1/1:0,175:175:99:5379,391,0 2 1651842 rs11685976 C A 414.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=-1.014;SB=-1.290e+02;SOR=0.915;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:23,16:39:99:443,0,589 2 1652660 rs3811613 G A 764.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.666;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.49;ReadPosRankSum=-1.365;SB=-4.300e+02;SOR=0.768;VQSLOD=5.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,27:34:99:793,0,181 2 1652822 rs1863135 T G 1769.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-9.780e+02;SOR=0.970;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1798,135,0 2 1664654 rs17841813 A G 3263.77 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.67;SB=-1.000e+03;SOR=2.390;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,110:110:99:3292,259,0 2 1667267 rs2241455 C G 638.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.528;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=6.447;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=-0.139;SB=-7.600e+01;SOR=1.837;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 0/1:44,23:67:99:667,0,1220 2 1667310 rs12475392 G A 3177.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-1.245e+03;SOR=1.779;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:3206,238,0 2 1687653 rs13396471 T G 458.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.225;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.95;ReadPosRankSum=-0.602;SB=-1.421e+02;SOR=0.439;VQSLOD=8.99;culprit=FS GT:AD:DP:GQ:PL 0/1:7,16:23:99:487,0,191 2 1696510 rs138859568 AAC A 917.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;DB;DP=45;ExcessHet=3.0103;FS=2.681;MLEAC=1;MLEAF=0.500;MQ=60.48;MQ0=0;MQRankSum=1.302;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.38;RPA=3,2;RU=AC;ReadPosRankSum=-1.303;SB=-3.500e+02;SOR=1.179;STR;VQSLOD=0.418;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,23:45:99:955,0,773 2 1747993 rs62116430 G A 488.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.132;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.853;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.10;ReadPosRankSum=0.609;SB=-2.070e+02;SOR=1.371;VQSLOD=6.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,20:27:99:517,0,153 2 1805430 rs2288178 G A 1068.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=5.204;HaplotypeScore=2.6203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=0.213;SB=-5.450e+02;SOR=1.135;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 0/1:52,43:95:99:1097,0,1345 2 1805489 rs2288179 A G 949.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.277;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=2.827;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=0.523;SB=-4.160e+02;SOR=1.022;VQSLOD=7.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,38:90:99:978,0,1228 2 1842968 rs6728368 T C 1460.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.97;SB=-3.200e+02;SOR=2.833;VQSLOD=4.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1489,111,0 2 1843285 rs10196494 A G 375.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.16;SB=0.00;SOR=4.977;VQSLOD=8.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:404,30,0 2 1844458 rs4381806 T C 906.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.88;SB=-3.300e+02;SOR=1.697;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:69:935,69,0 2 1844652 rs7425544 C T 571.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.0322;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.23;SB=-2.281e+02;SOR=1.828;VQSLOD=5.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:23:45:600,45,0 2 1890070 rs4241294 C T 485.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.70;SB=-7.497e+01;SOR=2.985;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:514,39,0 2 1890173 rs4853824 A G 1124.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-5.640e+02;SOR=1.329;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:87:1153,87,0 2 1925993 rs2241685 C T 621.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.575;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=4.329;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=0.539;SB=-6.400e+01;SOR=1.781;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 0/1:14,21:35:99:650,0,401 2 1926437 rs1529667 G T 4554.77 PASS AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=-2.638e+03;SOR=0.737;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,137:137:99:4583,340,0 2 1946646 rs7355555 A C 1062.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.72;SB=-8.450e+02;SOR=0.739;VQSLOD=4.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:75:1091,75,0 2 1946914 rs3748988 A G 733.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.22;SB=-3.590e+02;SOR=1.445;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:60:762,60,0 2 1946968 rs3748989 C T 320.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.909;HaplotypeScore=3.4742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.44;ReadPosRankSum=0.725;SB=-2.210e+02;SOR=0.729;VQSLOD=5.35;culprit=QD GT:AD:DP:GQ:PL 0/1:22,16:38:99:349,0,522 2 1982877 rs2304007 T G 1280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.991;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=1.729;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-0.432;SB=-7.550e+02;SOR=0.522;VQSLOD=10.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,54:93:99:1309,0,1006 2 1983374 rs2304008 A C 1563.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.129;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.737;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=-0.975;SB=-6.600e+02;SOR=0.833;VQSLOD=8.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,56:110:99:1592,0,1461 2 1983395 rs2304009 C T 1515.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.423;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-0.528;SB=-7.690e+02;SOR=0.681;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:57,59:116:99:1544,0,1665 2 1983619 rs7561518 A G 862.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.556;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.368;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=0.727;SB=-1.850e+02;SOR=0.385;VQSLOD=10.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,29:57:99:891,0,754 2 3193040 rs17682 G A 1290.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.042;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=1.707;HaplotypeScore=3.5173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-0.502;SB=-4.180e+02;SOR=0.921;VQSLOD=8.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,49:111:99:1319,0,1625 2 3196040 rs2242084 A G 726.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.61;SB=-7.997e+01;SOR=3.816;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:57:755,57,0 2 3212247 rs7584823 G T 324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.232;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=0.720;SB=-3.100e+01;SOR=0.752;VQSLOD=10.13;culprit=FS GT:AD:DP:GQ:PL 0/1:18,12:30:99:353,0,539 2 3212704 rs7595702 C A 767.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.408;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.887;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=-0.727;SB=-4.610e+02;SOR=0.612;VQSLOD=8.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,31:77:99:796,0,1186 2 3217777 rs11127386 A C 428.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.87;SB=0.00;SOR=5.136;VQSLOD=7.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:457,36,0 2 3217794 rs10865535 T C 521.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3539;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=0.00;SOR=5.421;VQSLOD=7.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:550,42,0 2 3217896 rs3762596 C T 877.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.6798;MLEAC=1;MLEAF=0.500;MQ=59.79;MQ0=0;MQRankSum=1.639;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.724;SB=-3.030e+02;SOR=0.622;VQSLOD=3.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,36:64:99:906,0,693 2 3217908 rs11682452 G C 2052.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6421;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.64;SB=-7.440e+02;SOR=1.828;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2081,150,0 2 3277884 rs4854162 A G 77.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.769;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.86;ReadPosRankSum=-0.485;SB=-5.150e-01;SOR=1.609;VQSLOD=4.82;culprit=QD GT:AD:DP:GQ:PL 0/1:12,4:16:99:106,0,324 2 3277947 rs2694081 T A 358.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.501;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=10.922;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=0.824;SB=-2.171e+02;SOR=0.045;VQSLOD=4.61;culprit=FS GT:AD:DP:GQ:PL 0/1:12,14:26:99:387,0,346 2 3322555 rs62121538 T C 239.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.257;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=0.889;SB=-1.765e+00;SOR=1.445;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:10,8:18:99:268,0,316 2 3322797 rs12618407 C A 603.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.057;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.512;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=1.261;SB=-2.130e+02;SOR=0.350;VQSLOD=9.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,22:39:99:632,0,449 2 3341693 rs80177267 A C 473.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.737;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.53;ReadPosRankSum=1.255;SB=-1.115e+02;SOR=0.223;VQSLOD=8.27;culprit=SOR GT:AD:DP:GQ:PL 0/1:6,16:22:99:502,0,176 2 3342009 rs3811617 T C 89.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.025;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=1.465;SB=0.00;SOR=0.412;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:118,0,204 2 3356849 rs4854122 A G 240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.865;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-0.076;SB=0.00;SOR=0.527;VQSLOD=9.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,9:20:99:269,0,377 2 3356850 rs12479261 T C 345.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.312;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=0.423;SB=0.00;SOR=0.784;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:10,11:21:99:374,0,302 2 3356953 rs2875394 A T 2081.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.04;SB=-1.073e+03;SOR=1.463;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2110,159,0 2 3356995 rs62119517 G A 1163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-0.023;SB=-6.080e+02;SOR=0.727;VQSLOD=8.44;culprit=FS GT:AD:DP:GQ:PL 0/1:58,46:104:99:1192,0,1366 2 3358458 rs146001084 ATTATGAAGTTAGAT A 8022.73 PASS AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.21;SB=-2.043e+03;SOR=2.256;VQSLOD=5.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:62:99:8060,148,0 2 3391826 rs11127423 C T 368.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.132;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.315;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=1.965;SB=-1.090e+02;SOR=0.762;VQSLOD=4.86;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:15,14:29:99:397,0,423 2 3392075 rs10865541 T C 1394.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.444;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=0.537;SB=-9.430e+02;SOR=0.673;VQSLOD=8.95;culprit=FS GT:AD:DP:GQ:PL 0/1:33,53:87:99:1423,0,848 2 3392295 rs11686212 A G 2398.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;DB;DP=204;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=-0.233;SB=-1.279e+03;SOR=0.678;VQSLOD=6.50;culprit=DP GT:AD:DP:GQ:PL 0/1:115,89:204:99:2427,0,2971 2 3392513 rs12999423 T C 1847.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.862;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-0.045;SB=-1.160e+03;SOR=0.629;VQSLOD=7.49;culprit=DP GT:AD:DP:GQ:PL 0/1:79,76:156:99:1876,0,2121 2 3392514 rs12999424 T A 1715.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.612;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.637;SB=-1.114e+03;SOR=0.622;VQSLOD=7.15;culprit=DP GT:AD:DP:GQ:PL 0/1:83,75:158:99:1744,0,2124 2 3393288 rs4476382 A G 270.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.417;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.039;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=-0.227;SB=-8.297e+01;SOR=0.160;VQSLOD=9.71;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,11:18:99:299,0,221 2 3393289 rs4318418 A C 299.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.199;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.039;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=-0.227;SB=-8.097e+01;SOR=0.160;VQSLOD=9.56;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,11:18:99:328,0,231 2 3425514 rs7558487 G C 2196.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.79;SB=-9.200e+02;SOR=1.318;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2225,163,0 2 3425729 rs1132171 C T 2077.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=0.600;HaplotypeScore=2.8315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=-0.357;SB=-1.119e+03;SOR=0.774;VQSLOD=8.21;culprit=DP GT:AD:DP:GQ:PL 0/1:72,83:157:99:2106,0,1943 2 3425948 rs10206964 T C 1231.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.41;SB=-1.633e+02;SOR=3.912;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1260,102,0 2 3460889 rs117295972 G A 92.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.43;ReadPosRankSum=-0.361;SB=0.00;SOR=0.330;VQSLOD=9.57;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:99:121,0,223 2 3579760 rs1071625 T C 241.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.503;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=8.930;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.30;ReadPosRankSum=-0.987;SB=-1.260e+02;SOR=0.045;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 0/1:15,11:26:99:270,0,494 2 3597974 rs10186193 T C 179.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=0.484;SB=-3.101e+01;SOR=0.859;VQSLOD=9.89;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:208,0,169 2 3599539 rs13399327 A G 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.111;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=1.467;SB=-6.500e+01;SOR=0.368;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:203,0,243 2 3599700 rs7563960 G T 385.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.106;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=-1.220;SB=-2.590e+02;SOR=0.804;VQSLOD=9.89;culprit=FS GT:AD:DP:GQ:PL 0/1:20,17:37:99:414,0,572 2 3600012 rs151141402 CCTCT C 684.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.33;RPA=3,1;RU=CT;ReadPosRankSum=0.524;SB=-1.970e+02;SOR=0.593;STR;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 0/1:12,11:24:99:722,0,730 2 3605468 rs12711976 A G 3950.77 PASS AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=-1.984e+03;SOR=1.312;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,133:133:99:3979,286,0 2 3605528 rs62106013 T G 902.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.683;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=2.210;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=-0.083;SB=-2.200e+02;SOR=1.065;VQSLOD=7.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,32:77:99:931,0,1192 2 3605538 rs34613047 A C 824.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.289;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=2.266;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-0.665;SB=-2.250e+02;SOR=1.033;VQSLOD=7.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,32:71:99:853,0,1108 2 3627648 rs7576238 G C 1963.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-8.130e+02;SOR=1.092;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1992,147,0 2 3652616 rs3769507 G C 2498.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.11;SB=-1.585e+03;SOR=0.818;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2527,181,0 2 3653576 rs7604806 A G 1524.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.08;SB=-2.061e+02;SOR=3.767;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1553,114,0 2 3653844 rs3739147 T C 1462.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-3.990e+02;SOR=2.461;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1491,117,0 2 3660752 rs3811531 T C 1451.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=-1.473e+02;SOR=4.021;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1480,111,0 2 3665138 rs11892595 C T 445.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=29.72;SB=-4.176e+01;SOR=4.047;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:474,36,0 2 3665146 rs11896016 T C 537.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-3.876e+01;SOR=4.047;VQSLOD=7.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:566,42,0 2 3665342 rs2312925 T C 1772.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4048;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.33;SB=-1.015e+03;SOR=1.329;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:1801,135,0 2 3685046 rs3811528 T C 1573.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-3.550e+02;SOR=2.925;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1602,117,0 2 3685074 rs3811527 A G 1845.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.55;SB=-8.490e+02;SOR=1.716;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:1874,141,0 2 3718692 rs13409104 C T 1155.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.217;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.727;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=0.108;SB=-6.180e+02;SOR=0.573;VQSLOD=9.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,49:110:99:1184,0,1583 2 3718985 rs34086816 A G 439.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.919;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.750;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.471;SB=-1.780e+02;SOR=0.352;VQSLOD=9.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,17:28:99:468,0,322 2 3721632 . G A 311.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.533;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-1.112;SB=-9.500e+01;SOR=0.404;VQSLOD=8.25;culprit=FS GT:AD:DP:GQ:PL 0/1:19,14:33:99:340,0,581 2 3721729 rs12105179 A G 651.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.709;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.953;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=-1.598;SB=-4.310e+02;SOR=0.705;VQSLOD=6.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,29:60:99:680,0,778 2 3726163 rs2043080 T C 1790.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.489;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=4.102;HaplotypeScore=4.5143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=0.649;SB=-6.900e+02;SOR=0.334;VQSLOD=9.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,61:112:99:1819,0,1429 2 3729254 rs13426642 C T 519.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.985;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.304;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.00;ReadPosRankSum=0.802;SB=-3.020e+02;SOR=0.916;VQSLOD=7.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,23:52:99:548,0,835 2 3748971 rs6730148 T C 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=8.098;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=-1.561;SB=-1.620e+02;SOR=0.048;VQSLOD=8.01;culprit=FS GT:AD:DP:GQ:PL 0/1:12,12:24:99:309,0,367 2 3749151 rs66473381 GGAA G 1545.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;DB;DP=71;ExcessHet=3.0103;FS=4.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.77;RPA=3,2;RU=GAA;ReadPosRankSum=2.035;SB=-7.880e+02;SOR=0.299;STR;VQSLOD=7.86;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:40,31:71:99:1583,0,2101 2 3774436 rs357940 C T 767.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-1.553e+02;SOR=2.925;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:796,60,0 2 3774448 rs12711970 T C 506.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.805;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=0.551;SB=-1.070e+02;SOR=1.270;VQSLOD=6.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,18:30:99:535,0,293 2 3774519 rs357941 T C 2031.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.45;SB=-8.440e+02;SOR=1.576;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2060,150,0 2 3800095 rs56857953 C T 611.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.046;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.728;HaplotypeScore=2.6203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=1.359;SB=-1.050e+02;SOR=0.411;VQSLOD=9.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,21:42:99:640,0,737 2 3800383 rs357969 C T 4419.77 PASS AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.35;SB=-2.201e+03;SOR=0.960;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,141:141:99:4448,334,0 2 3800496 rs357968 C T 3003.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=-1.392e+03;SOR=1.436;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3032,229,0 2 3815250 rs10180257 A G 893.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-2.840e+02;SOR=2.226;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:66:922,66,0 2 3815532 . A AT 251.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.879;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;RPA=12,13;RU=T;ReadPosRankSum=0.714;SB=-2.404e+01;SOR=0.990;STR;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:10,13:30:99:289,0,167 2 3816733 rs77165837 C T 192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=0.415;SB=0.00;SOR=0.836;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:221,0,208 2 3816759 rs13003140 G T 314.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.348;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=-0.388;SB=-4.176e+01;SOR=0.223;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:10,11:21:99:343,0,306 2 3826324 rs13005405 C T 1136.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-6.390e+02;SOR=1.096;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:84:1165,84,0 2 3826387 rs13021385 T C 1581.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-8.030e+02;SOR=0.952;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1610,120,0 2 3826597 rs13035992 G A 1487.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-3.900e+02;SOR=2.511;VQSLOD=5.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1516,117,0 2 3832358 rs1466227 T C 535.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=0.00;SOR=5.549;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:564,42,0 2 4672834 rs71906919 CTG C 184.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQ0=0;MQRankSum=0.524;POSITIVE_TRAIN_SITE;QD=18.47;RPA=9,8;RU=TG;ReadPosRankSum=-0.204;SB=-3.800e+01;SOR=1.179;STR;VQSLOD=4.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,6:12:99:222,0,148 2 5834249 rs377004457 G GTGA 263.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.84;RPA=5,6;RU=TGA;ReadPosRankSum=1.078;SB=-5.200e+01;SOR=0.446;STR;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:20:99:301,0,370 2 6990033 rs6712141 T C 932.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.294;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.879;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.133;SB=-6.560e+02;SOR=0.532;VQSLOD=10.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,40:75:99:961,0,914 2 7001224 rs139571871 TACACACACACGC T 3409.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.672;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.83;ReadPosRankSum=0.053;SB=-6.041e+02;SOR=1.863;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:1,32:34:85:3447,85,0 2 7001225 rs149134084 ACACACACACG A 3626.73 PASS AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.00;SB=-5.931e+02;SOR=3.126;VQSLOD=5.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:34:97:3664,97,0 2 7001259 . C A 1293.77 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.13;SB=-5.200e+02;SOR=1.464;VQSLOD=4.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:96:1322,96,0 2 7005069 rs2595172 C T 1195.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.66;SB=-3.920e+02;SOR=2.133;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:90:1224,90,0 2 7005369 rs11678810 A G 2098.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.70;SB=-7.120e+02;SOR=1.733;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:2127,157,0 2 7017903 rs10182815 A G 2535.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-1.187e+03;SOR=1.395;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2564,187,0 2 7019079 rs6704746 A G 1282.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-5.770e+02;SOR=1.556;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1311,102,0 2 7027323 rs9917321 T A 1769.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.40;SB=-1.991e+02;SOR=4.091;VQSLOD=4.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1798,138,0 2 7050426 rs6725201 G C 2713.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.7480;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.98;SB=-1.476e+03;SOR=1.274;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:98:99:2742,211,0 2 7050483 . A ATGTGTG 1451.73 PASS AC=2;AF=1.00;AN=2;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=32.99;RPA=16,19;RU=TG;SB=-1.670e+02;SOR=3.912;STR;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:52:66:1489,66,0 2 7076422 rs10209660 T A 158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=-1.864;SB=0.00;SOR=0.569;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:187,0,231 2 7076975 . A AGTGT 558.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQ0=0;MQRankSum=1.583;QD=12.32;RPA=17,19;RU=GT;ReadPosRankSum=0.616;SB=-1.120e+02;SOR=1.127;STR;VQSLOD=2.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,14:39:99:596,0,884 2 7130516 . TAC T 229.75 PASS AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=28.72;RPA=25,24;RU=AC;SB=-3.876e+01;SOR=2.833;STR;VQSLOD=5.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,8:16:24:267,24,0 2 7137067 rs364891 A G 559.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=-1.195e+02;SOR=2.712;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:588,42,0 2 7137317 rs378548 G A 1438.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-7.200e+02;SOR=1.251;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1467,105,0 2 7154632 rs309325 T C 3435.77 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;SB=-1.445e+03;SOR=1.392;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,113:114:99:3464,259,0 2 7164578 rs376219 A G 3771.77 PASS AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.24;SB=-2.581e+03;SOR=0.740;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,129:129:99:3800,271,0 2 7164746 rs392709 C G 1351.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-4.180e+02;SOR=1.721;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1380,102,0 2 7164812 rs392409 C G 530.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.81;SB=0.00;SOR=5.421;VQSLOD=8.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:559,42,0 2 7208060 rs309264 C A 723.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.60;SB=-1.185e+02;SOR=3.056;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:57:752,57,0 2 7386160 rs35913686 C T 659.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.714;DB;DP=54;Dels=0.02;ExcessHet=3.0103;FS=1.301;HaplotypeScore=20.1821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=-0.825;SB=-2.450e+02;SOR=0.484;VQSLOD=9.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,30:53:99:688,0,588 2 7386192 rs72770055 T C 769.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.740;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=-0.244;SB=-3.190e+02;SOR=0.699;VQSLOD=8.32;culprit=FS GT:AD:DP:GQ:PL 0/1:46,32:79:99:798,0,1140 2 7403641 . T TACACACAC,TACACAC 2295.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.14;RPA=11,15,14;RU=AC;SB=-5.710e+02;SOR=2.147;STR;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/2:0,15,13:31:99:2333,459,381,594,0,510 2 7421569 rs368940217 C CTG 178.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.92;RPA=9,10;RU=TG;ReadPosRankSum=-1.964;SB=0.00;SOR=0.399;STR;VQSLOD=8.18;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,6:15:99:216,0,337 2 8822892 rs373887089 CAAAAAAAAAAAA C 1442.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;DB;DP=32;ExcessHet=3.0103;FS=1.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;RPA=25,13;RU=A;ReadPosRankSum=1.511;SB=-2.520e+02;SOR=1.095;STR;VQSLOD=7.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,12:32:99:1480,0,1505 2 8822912 . A C 187.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;DP=39;Dels=0.03;ExcessHet=3.0103;FS=14.867;HaplotypeScore=47.2213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.94;ReadPosRankSum=-1.419;SB=-4.800e+01;SOR=0.284;VQSLOD=3.05;culprit=QD GT:AD:DP:GQ:PL 0/1:23,15:38:99:216,0,524 2 8870814 rs6431959 A G 889.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.95;SB=-2.301e+02;SOR=2.387;VQSLOD=7.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:66:918,66,0 2 8877042 rs61742863 G A 519.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.752;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.526;HaplotypeScore=3.4763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.43;ReadPosRankSum=-0.569;SB=-2.150e+02;SOR=1.268;VQSLOD=6.01;culprit=QD GT:AD:DP:GQ:PL 0/1:46,24:70:99:548,0,1295 2 8887180 rs3351 A G 324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.769;HaplotypeScore=3.5971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.80;ReadPosRankSum=0.111;SB=-9.700e+01;SOR=1.383;VQSLOD=5.58;culprit=QD GT:AD:DP:GQ:PL 0/1:41,15:56:99:353,0,1118 2 8887426 rs12622593 A G 353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.837;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.758;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=0.120;SB=-5.300e+01;SOR=1.371;VQSLOD=6.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,13:31:99:382,0,415 2 8887910 rs1978841 A T 424.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.271;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.559;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=0.040;SB=-1.766e+00;SOR=2.833;VQSLOD=5.65;culprit=FS GT:AD:DP:GQ:PL 0/1:7,13:20:99:453,0,175 2 8910987 rs12476359 A T 1534.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-5.010e+02;SOR=2.170;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1563,120,0 2 8911010 rs17630893 T C 622.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.414;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=-1.288;SB=-1.340e+02;SOR=1.071;VQSLOD=10.04;culprit=FS GT:AD:DP:GQ:PL 0/1:16,21:37:99:651,0,389 2 8916847 rs4669338 A T 2313.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6377;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.03;SB=-4.640e+02;SOR=3.007;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2342,178,0 2 8943291 rs2356658 G A 341.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=0.00;SOR=4.804;VQSLOD=8.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:370,30,0 2 8998624 rs10929559 A G 890.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.81;SB=-3.600e+02;SOR=1.609;VQSLOD=7.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:69:919,69,0 2 9419411 rs10193043 G A 1199.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.346;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=1.956;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=-1.007;SB=-5.100e+02;SOR=0.981;VQSLOD=7.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,45:78:99:1228,0,746 2 9458460 rs3811599 A G 338.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.964;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=-2.462;SB=-1.020e+02;SOR=0.693;VQSLOD=9.73;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:10,14:24:99:367,0,270 2 9460234 rs17522163 G A 310.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.467;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=-0.248;SB=-4.276e+01;SOR=0.317;VQSLOD=10.10;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:19:99:339,0,269 2 9467815 rs7569295 C T 726.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=-2.341e+02;SOR=2.215;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:57:755,57,0 2 9475337 rs4392227 A G 637.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.820;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.917;HaplotypeScore=6.0113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.86;ReadPosRankSum=0.526;SB=-3.060e+02;SOR=0.910;VQSLOD=7.33;culprit=QD GT:AD:DP:GQ:PL 0/1:42,30:72:99:666,0,1043 2 9484542 rs6724103 C T 639.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.95;SB=-4.176e+01;SOR=4.294;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:668,51,0 2 9484561 rs79044067 TAAAA T 1109.73 PASS AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.54;MQ0=0;QD=28.49;RPA=10,6;RU=A;SB=-1.220e+02;SOR=3.716;STR;VQSLOD=4.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:1147,60,0 2 9491017 rs4669385 C T 1062.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.52;SB=-3.460e+02;SOR=2.179;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:37:84:1091,84,0 2 9496291 rs2709591 T C 4471.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.362;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.48;ReadPosRankSum=-0.872;SB=-2.817e+03;SOR=0.267;VQSLOD=2.21;culprit=DP GT:AD:DP:GQ:PL 1/1:1,156:157:99:4500,300,0 2 9514917 rs33930824 C T 373.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.482;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=-0.483;SB=-1.520e+02;SOR=0.582;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:24,16:40:99:402,0,625 2 9515157 rs6724714 C T 237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=1.329;SB=0.00;SOR=1.445;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:99:266,0,128 2 9520959 rs12467000 C T 694.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.333;SB=-2.260e+02;SOR=0.598;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:37,27:64:99:723,0,937 2 9528801 rs3811594 T C 1268.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.586;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=2.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=0.600;SB=-2.990e+02;SOR=0.990;VQSLOD=8.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,46:95:99:1297,0,1351 2 9540849 rs10204214 C T 1595.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.761;DB;DP=164;Dels=0.00;ExcessHet=3.0103;FS=2.004;HaplotypeScore=1.8737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.73;ReadPosRankSum=1.212;SB=-9.290e+02;SOR=0.484;VQSLOD=6.35;culprit=DP GT:AD:DP:GQ:PL 0/1:100,64:164:99:1624,0,2747 2 9543221 rs11674625 C A 234.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.054;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.77;ReadPosRankSum=0.628;SB=0.00;SOR=0.976;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:263,0,195 2 9547048 . A AAGAT 3989.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;DP=150;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.93;RPA=1,2;RU=AGAT;ReadPosRankSum=-0.595;SB=-1.850e+03;SOR=0.588;STR;VQSLOD=6.08;culprit=DP GT:AD:DP:GQ:PL 0/1:77,66:150:99:4027,0,4456 2 9547171 rs10929579 G A 951.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.318;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.987;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQ0=0;MQRankSum=1.038;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=1.040;SB=-3.330e+02;SOR=0.546;VQSLOD=0.338;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,39:79:99:980,0,1232 2 9547363 rs10929580 C A 89.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.041;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.91;ReadPosRankSum=0.000;SB=-5.150e-01;SOR=2.215;VQSLOD=5.92;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:99:118,0,275 2 9548026 . T TG 406.73 PASS AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.29;RPA=8,9;RU=G;SB=0.00;SOR=5.283;STR;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:444,39,0 2 9552379 rs10929581 C T 537.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.7357;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.30;SB=-2.241e+02;SOR=1.609;VQSLOD=5.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:42:566,42,0 2 9552383 . A AT 362.80 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQ0=0;MQRankSum=0.560;QD=18.14;RPA=12,13;RU=T;ReadPosRankSum=-0.212;SB=-1.236e+02;SOR=1.127;STR;VQSLOD=2.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,17:20:18:400,0,18 2 9554255 rs10208358 G A 759.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.39;SB=-2.291e+02;SOR=1.893;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:788,60,0 2 9554280 rs12474647 A T 829.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-2.580e+02;SOR=2.066;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:63:858,63,0 2 9554461 rs10185646 C A 407.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-8.097e+01;SOR=2.833;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:436,33,0 2 9569972 rs7589401 A T 2569.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-6.890e+02;SOR=2.513;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2598,196,0 2 9571054 rs2002044 C T 809.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.40;SB=-3.976e+01;SOR=4.892;VQSLOD=8.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:838,69,0 2 9572888 rs12478467 A T 626.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-1.155e+02;SOR=2.948;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:51:655,51,0 2 9572928 rs34003003 C T 445.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.19;SB=-4.076e+01;SOR=3.611;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:474,36,0 2 9576553 rs6432003 T C 830.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.65;SB=-2.650e+02;SOR=2.226;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:66:859,66,0 2 9580540 . G GT 604.73 PASS AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.49;RPA=2,3;RU=T;SB=-4.076e+01;SOR=4.294;STR;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:642,51,0 2 9583922 rs11681316 A G 828.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.53;SB=-1.065e+02;SOR=3.442;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:25:63:857,63,0 2 9599767 . CT C 58.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.72;MQ0=0;MQRankSum=1.333;QD=3.67;RPA=28,27;RU=T;ReadPosRankSum=0.257;SB=0.00;SOR=0.941;STR;VQSLOD=1.20;culprit=QD GT:AD:DP:GQ:PL 0/1:7,9:29:96:96,0,102 2 9612901 rs4622691 A C 533.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=0.00;SOR=5.421;VQSLOD=7.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:562,42,0 2 9613289 rs2001658 T C 399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.31;SB=0.00;SOR=5.136;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:428,36,0 2 9615556 rs6432007 T C 594.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=0.00;SOR=5.784;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:623,51,0 2 9616035 rs7591166 A G 413.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-3.577e+01;SOR=3.767;VQSLOD=7.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:442,36,0 2 9616301 rs3831465 TAGG T 1107.73 PASS AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.43;SB=-1.845e+02;SOR=2.948;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:22:57:1145,57,0 2 9621683 rs2276337 G A 259.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.509;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.65;ReadPosRankSum=-0.651;SB=0.00;SOR=1.445;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:99:288,0,123 2 9630231 rs6705408 C T 823.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.331;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.665;HaplotypeScore=5.2133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.72;ReadPosRankSum=-1.350;SB=-1.005e+02;SOR=0.100;VQSLOD=7.18;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,29:45:99:852,0,474 2 9630244 rs3833563 AT A 1312.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;DB;DP=58;ExcessHet=3.0103;FS=5.215;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=0.789;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.63;RPA=3,2;RU=T;ReadPosRankSum=-0.550;SB=-3.080e+02;SOR=0.223;STR;VQSLOD=0.257;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,37:58:99:1350,0,619 2 9633137 rs4622692 T G 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.769;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.54;ReadPosRankSum=-0.395;SB=-1.500e+02;SOR=0.606;VQSLOD=8.67;culprit=QD GT:AD:DP:GQ:PL 0/1:35,13:48:99:246,0,902 2 9634856 rs1048610 A G 930.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.883;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=1.542;SB=-6.030e+02;SOR=0.653;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:47,40:87:99:959,0,1198 2 9649966 rs11891922 A G 258.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=0.793;SB=0.00;SOR=0.818;VQSLOD=10.14;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:287,0,229 2 9658388 . CAA C 181.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.65;RPA=22,20;RU=A;ReadPosRankSum=0.740;SB=-1.773e+00;SOR=1.609;STR;VQSLOD=5.99;culprit=QD GT:AD:DP:GQ:PL 0/1:11,10:25:99:219,0,208 2 9728574 rs67724256 A G 343.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.871;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=0.386;SB=-2.901e+01;SOR=1.096;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:19,12:31:99:372,0,515 2 9983591 . A AG 1675.73 PASS AC=2;AF=1.00;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=24.83;RPA=1,2;RU=G;SB=-7.190e+02;SOR=1.040;STR;VQSLOD=3.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1713,114,0 2 9983686 rs2303914 G T 408.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.861;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=6.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQ0=0;MQRankSum=0.972;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-0.258;SB=-1.940e+02;SOR=0.096;VQSLOD=0.642;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,17:31:99:437,0,459 2 9983716 rs385513 A C 808.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-1.603e+02;SOR=2.494;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:63:837,63,0 2 9986162 rs287987 C T 350.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.725;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=0.462;SB=-6.800e+01;SOR=0.914;VQSLOD=9.92;culprit=FS GT:AD:DP:GQ:PL 0/1:10,12:22:99:379,0,271 2 9991556 rs287991 G A 717.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.28;SB=0.00;SOR=6.091;VQSLOD=8.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:746,60,0 2 9991867 rs287992 G A 109.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.762;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.23;ReadPosRankSum=-0.273;SB=-2.801e+01;SOR=0.148;VQSLOD=8.76;culprit=QD GT:AD:DP:GQ:PL 0/1:15,6:21:99:138,0,522 2 10023016 rs447465 T C 483.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.906;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=1.437;SB=-9.400e+01;SOR=0.498;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:15,17:33:99:512,0,443 2 10044875 rs565683 A G 195.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=0.734;SB=-1.765e+00;SOR=1.179;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 0/1:12,8:20:99:224,0,353 2 10044941 . G T 882.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.138;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.58;ReadPosRankSum=0.336;SB=-2.660e+02;SOR=0.750;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 0/1:30,35:65:99:911,0,793 2 10044946 . G T 907.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.147;DP=70;Dels=0.00;ExcessHet=3.0103;FS=1.033;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.97;ReadPosRankSum=0.959;SB=-3.730e+02;SOR=0.474;VQSLOD=8.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,37:70:99:936,0,889 2 10044951 rs2052948 A G 794.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.483;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.984;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-1.278;SB=-2.720e+02;SOR=0.848;VQSLOD=7.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,34:71:99:823,0,927 2 10045014 rs400917 C T 2947.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.62;SB=-1.526e+03;SOR=1.179;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:2976,220,0 2 10045024 rs396190 G A 2960.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.47;SB=-1.701e+03;SOR=0.946;VQSLOD=5.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:2989,220,0 2 10045147 rs448327 A G 2361.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=-9.840e+02;SOR=1.519;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2390,172,0 2 10050947 rs1054561 T C 1541.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.394;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=0.653;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-0.076;SB=-8.620e+02;SOR=0.772;VQSLOD=8.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,67:131:99:1570,0,1569 2 10050960 rs1054565 A G 1369.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.869;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=1.535;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=0.279;SB=-6.580e+02;SOR=0.892;VQSLOD=8.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,56:116:99:1398,0,1488 2 10051053 rs10495576 G C 326.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.503;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=-0.178;SB=-2.501e+01;SOR=0.999;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:24,11:35:99:355,0,712 2 10053412 rs12467598 C T 966.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.984;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=5.504;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=0.035;SB=-4.550e+02;SOR=1.265;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 0/1:46,39:85:99:995,0,1140 2 10059097 rs2303921 A C 1048.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.838;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=9.994;HaplotypeScore=10.1719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=1.747;SB=-2.760e+02;SOR=1.631;VQSLOD=5.54;culprit=FS GT:AD:DP:GQ:PL 0/1:51,38:89:99:1077,0,1260 2 10059770 rs1820965 G T 640.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.481;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-1.865;SB=-2.320e+02;SOR=0.824;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:29,25:54:99:669,0,798 2 10059844 rs16867245 C T 859.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=3.128;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-0.585;SB=-4.540e+02;SOR=1.148;VQSLOD=7.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,35:73:99:888,0,943 2 10094992 rs2303918 A G 759.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.792;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.000;SB=-2.790e+02;SOR=0.546;VQSLOD=10.05;culprit=FS GT:AD:DP:GQ:PL 0/1:30,30:60:99:788,0,807 2 10139017 rs71669243 C CAT 209.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.211;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=1.315;POSITIVE_TRAIN_SITE;QD=12.34;RPA=6,7;RU=AT;ReadPosRankSum=-0.196;SB=0.00;SOR=0.425;STR;VQSLOD=3.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,7:17:99:247,0,389 2 10225241 rs6432058 C T 1682.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=-1.921e+02;SOR=4.047;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1711,132,0 2 10226306 . G GC 432.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;DP=43;ExcessHet=3.0103;FS=3.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.55;RPA=1,2;RU=C;ReadPosRankSum=-0.280;SB=-1.970e+02;SOR=0.260;STR;VQSLOD=8.50;culprit=SOR GT:AD:DP:GQ:PL 0/1:28,13:43:99:470,0,1112 2 10281903 . G GC 909.73 PASS AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.93;RPA=2,3;RU=C;SB=0.00;SOR=6.358;STR;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:947,69,0 2 10332876 rs56228505 AC A 948.73 PASS AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;RPA=8,7;RU=C;SB=-4.920e+02;SOR=0.693;STR;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:30:84:986,84,0 2 10333010 rs10187710 G A 379.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.13;SB=-1.841e+02;SOR=1.329;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:30:408,30,0 2 10580967 rs1049500 G A 2253.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-1.223e+03;SOR=1.032;VQSLOD=7.43;culprit=DP GT:AD:DP:GQ:PL 1/1:0,73:73:99:2282,166,0 2 10584022 rs3752661 T C 2098.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.65;SB=-4.920e+02;SOR=2.522;VQSLOD=6.33;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,55:55:99:2127,157,0 2 10585311 rs2302614 A C 386.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.03;SB=0.00;SOR=4.804;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:415,30,0 2 10712278 rs3732114 C T 584.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.531;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.680;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=-0.695;SB=-3.890e+02;SOR=0.385;VQSLOD=10.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,25:41:99:613,0,380 2 10717714 rs12473957 G C 470.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.357;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=0.952;SB=-1.320e+02;SOR=0.927;VQSLOD=9.92;culprit=FS GT:AD:DP:GQ:PL 0/1:22,18:40:99:499,0,562 2 10729032 rs6714787 C T 363.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.666;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.40;ReadPosRankSum=0.906;SB=0.00;SOR=1.371;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:6,11:17:99:392,0,179 2 10729897 rs759403 C T 943.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-2.680e+02;SOR=2.226;VQSLOD=7.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:972,72,0 2 10742741 rs3815520 T C 215.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.218;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-0.927;SB=-2.501e+01;SOR=1.371;VQSLOD=7.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,8:16:99:244,0,207 2 10743153 rs2287061 C T 715.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-2.920e+02;SOR=1.270;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:57:744,57,0 2 10743191 rs2287062 G A 903.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.47;SB=-4.320e+02;SOR=1.101;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:69:932,69,0 2 10743319 rs2287063 T C 378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.280;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=0.198;SB=-2.420e+02;SOR=0.481;VQSLOD=9.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,17:37:99:407,0,503 2 10747246 rs6744854 C G 529.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=0.00;SOR=5.421;VQSLOD=8.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:558,42,0 2 10747271 rs6759740 A G 987.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.66;SB=0.00;SOR=6.518;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:75:1016,75,0 2 10762302 rs70953325 TA T 1725.73 PASS AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;RPA=2,1;RU=A;SB=-6.360e+02;SOR=1.347;STR;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1763,123,0 2 10784349 rs3732112 C T 502.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.910;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.418;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.34;ReadPosRankSum=0.307;SB=-2.501e+01;SOR=1.609;VQSLOD=5.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,16:29:99:531,0,401 2 10784491 rs3732111 A G 1245.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.670;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=3.646;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-0.729;SB=-8.090e+02;SOR=0.547;VQSLOD=8.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,50:104:99:1274,0,1347 2 10784528 rs3821196 T C 1024.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=-0.659;SB=-6.050e+02;SOR=0.725;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 0/1:49,45:94:99:1053,0,1206 2 10803104 rs201462244 T C 673.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.673;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.032;HaplotypeScore=4.3772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=0.166;SB=-4.920e+02;SOR=0.546;VQSLOD=8.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,31:68:99:702,0,926 2 10808776 rs148588415 C CAA 1556.73 PASS AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.25;SB=-6.740e+02;SOR=0.997;VQSLOD=5.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:84:1594,84,0 2 10908662 rs12468989 G A 208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.899;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=0.447;SB=0.00;SOR=1.270;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:237,0,110 2 10908893 rs1198849 A G 918.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.133;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=2.941;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=-0.067;SB=-5.010e+02;SOR=0.439;VQSLOD=9.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,38:84:99:947,0,1113 2 10911891 rs1198850 T C 5069.77 PASS AC=2;AF=1.00;AN=2;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-1.385e+03;SOR=2.318;VQSLOD=5.48;culprit=DP GT:AD:DP:GQ:PL 1/1:0,155:155:99:5098,370,0 2 10912153 rs2171773 T G 920.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.840;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=1.668;SB=-6.800e+01;SOR=1.280;VQSLOD=6.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,30:56:99:949,0,807 2 10912719 rs72777388 G A 358.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.70;ReadPosRankSum=-1.003;SB=-2.200e+02;SOR=0.448;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:19,18:37:99:387,0,575 2 10914867 rs56195743 A T 636.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.952;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=-1.931;SB=-2.920e+02;SOR=0.275;VQSLOD=9.54;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:19,26:45:99:665,0,546 2 10915020 rs2969881 A G 810.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.512;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.094;HaplotypeScore=2.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-0.370;SB=-4.480e+02;SOR=0.412;VQSLOD=9.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,30:64:99:839,0,948 2 10917555 rs72777393 C T 354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.112;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.139;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=2.368;SB=-6.700e+01;SOR=0.324;VQSLOD=8.99;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:14,14:28:99:383,0,456 2 10922516 rs1686482 A C 1734.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=-5.280e+02;SOR=2.345;VQSLOD=7.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:56:99:1763,129,0 2 10924524 rs1198873 T C 463.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.76;SB=-1.633e+02;SOR=2.303;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:39:492,39,0 2 10927345 rs1686510 T C 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.354;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.906;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=1.306;SB=-1.090e+02;SOR=0.330;VQSLOD=9.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,12:25:99:317,0,370 2 10928694 . G GA 326.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQ0=0;MQRankSum=0.944;POSITIVE_TRAIN_SITE;QD=16.34;RPA=14,15;RU=A;ReadPosRankSum=-0.592;SB=-7.721e+01;SOR=1.609;STR;VQSLOD=3.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,17:22:12:282,0,12 2 10928777 rs2952626 A C 1717.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.41;SB=-7.820e+02;SOR=1.402;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1746,126,0 2 10928906 rs1734432 T C 2121.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.22;SB=-1.048e+03;SOR=0.976;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2150,160,0 2 10928962 rs1734431 A G 1866.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.19;SB=-1.085e+03;SOR=0.762;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1895,138,0 2 10929133 rs1734430 A G 953.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;SB=-2.580e+02;SOR=2.147;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:982,72,0 2 10929867 rs11904084 T C 1916.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.42;SB=-1.083e+03;SOR=0.790;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1945,144,0 2 10930050 rs1686514 A T 1028.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.62;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.39;SB=-3.760e+02;SOR=1.885;VQSLOD=5.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:81:1057,81,0 2 10930106 rs199881762 ATTT A 447.73 PASS AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.64;MQ0=0;QD=34.89;RPA=18,15;RU=T;SB=0.00;SOR=5.136;STR;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:13:36:485,36,0 2 10930848 . G A 549.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.960;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.21;ReadPosRankSum=0.687;SB=-3.350e+02;SOR=0.822;VQSLOD=5.17;culprit=QD GT:AD:DP:GQ:PL 0/1:43,24:67:99:578,0,1003 2 10930903 rs4807 T C 497.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.198;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.097;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=-1.292;SB=-2.210e+02;SOR=0.963;VQSLOD=7.20;culprit=QD GT:AD:DP:GQ:PL 0/1:34,22:56:99:526,0,907 2 10931001 rs1614107 A G 489.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=-3.577e+01;SOR=3.912;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:518,39,0 2 10932082 rs1734421 T C 1597.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.00;SB=-3.380e+02;SOR=2.786;VQSLOD=5.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1626,117,0 2 10933249 rs4799 C T 961.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.29;SB=-6.280e+02;SOR=0.811;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:72:990,72,0 2 10936979 rs1686445 C T 726.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=0.00;SOR=5.994;VQSLOD=8.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:755,57,0 2 10937037 rs1734343 T G 1616.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.94;SB=-8.197e+01;SOR=5.235;VQSLOD=4.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1645,120,0 2 10937065 rs1734344 T C 1072.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.710;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=5.364;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.18;ReadPosRankSum=0.587;SB=-1.350e+02;SOR=1.881;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 0/1:24,35:59:99:1101,0,663 2 10937095 rs56147885 T A 934.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.238;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-0.419;SB=-2.170e+02;SOR=0.785;VQSLOD=8.70;culprit=FS GT:AD:DP:GQ:PL 0/1:43,33:76:99:963,0,1266 2 10937409 rs1686444 C T 605.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-7.797e+01;SOR=3.611;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:20:51:634,51,0 2 10937980 rs17365181 T C 234.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.227;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.39;ReadPosRankSum=-0.567;SB=-3.500e+01;SOR=0.275;VQSLOD=10.07;culprit=FS GT:AD:DP:GQ:PL 0/1:16,9:25:99:263,0,544 2 10938043 rs56346617 T G 571.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=0.00;SOR=5.549;VQSLOD=8.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:600,45,0 2 10942687 rs4758 C T 1427.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=-5.710e+02;SOR=1.708;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:49:99:1456,105,0 2 10950111 rs67412527 ATGAC A 2199.73 PASS AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.04;SB=-5.080e+02;SOR=2.376;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:93:2237,93,0 2 10950136 rs1734448 T C 1323.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;SB=-4.950e+02;SOR=1.900;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1352,99,0 2 10950284 rs1734449 G C 2145.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-1.336e+03;SOR=0.723;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:69:99:2174,160,0 2 10952790 rs6726687 T C 1368.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.42;SB=-7.640e+02;SOR=0.829;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1397,105,0 2 10952941 . C T 279.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.98;ReadPosRankSum=0.779;SB=0.00;SOR=1.765;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 0/1:4,10:14:99:308,0,103 2 10959292 rs56321198 C A 49.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.52;ReadPosRankSum=2.362;SB=0.00;SOR=0.180;VQSLOD=7.86;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:78:78,0,283 2 10959384 rs55770944 A G 440.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=7.247;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.16;ReadPosRankSum=-0.354;SB=-5.455e+00;SOR=1.890;VQSLOD=5.49;culprit=QD GT:AD:DP:GQ:PL 0/1:37,17:54:99:469,0,945 2 10959407 rs72779451 A C 776.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.271;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=3.786;HaplotypeScore=3.6372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=-0.769;SB=-1.540e+02;SOR=1.293;VQSLOD=7.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,27:69:99:805,0,1034 2 10959461 rs72779452 G T 974.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.723;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=3.961;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=0.470;SB=-5.690e+02;SOR=0.925;VQSLOD=6.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,42:91:99:1003,0,1197 2 10959475 rs72779453 G C 987.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.322;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=1.723;HaplotypeScore=3.4034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=1.072;SB=-6.820e+02;SOR=0.481;VQSLOD=9.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,42:90:99:1016,0,1149 2 10960866 rs56121730 C T 775.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.194;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.921;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.785;SB=-1.270e+02;SOR=1.270;VQSLOD=7.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,26:55:99:804,0,806 2 10960952 rs56025654 G A 1305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.112;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=3.815;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=0.859;SB=-6.240e+02;SOR=1.109;VQSLOD=7.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,53:98:99:1334,0,1190 2 10961184 rs1686497 A G 587.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.211;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.018;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.64;ReadPosRankSum=-1.313;SB=-2.480e+02;SOR=0.919;VQSLOD=6.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,26:62:99:616,0,957 2 10961297 rs7571007 C T 358.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=4.589;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=0.892;SB=-6.300e+01;SOR=2.062;VQSLOD=5.77;culprit=FS GT:AD:DP:GQ:PL 0/1:10,12:22:99:387,0,207 2 10987581 rs73174567 T A 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.246;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.625;HaplotypeScore=2.7217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.97;ReadPosRankSum=0.610;SB=-5.000e+01;SOR=1.802;VQSLOD=5.24;culprit=QD GT:AD:DP:GQ:PL 0/1:23,13:36:99:315,0,552 2 10994418 rs1198852 T C 663.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=0.00;SOR=5.784;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:692,51,0 2 10995226 . A G 481.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.323;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.27;ReadPosRankSum=0.651;SB=-1.760e+02;SOR=0.836;VQSLOD=8.55;culprit=FS GT:AD:DP:GQ:PL 0/1:9,16:25:99:510,0,214 2 11053020 rs3732104 A G 2946.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.38;SB=-1.094e+03;SOR=1.609;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:2975,226,0 2 11053740 rs3732105 C T 3027.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.21;SB=-1.294e+03;SOR=1.464;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:3056,226,0 2 11245864 rs13421691 C T 1615.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.776;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=2.530;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=0.395;SB=-8.210e+02;SOR=0.456;VQSLOD=9.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,61:113:99:1644,0,1341 2 11245869 rs13405253 C T 1561.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.096;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.746;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=0.012;SB=-7.600e+02;SOR=0.566;VQSLOD=9.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,60:111:99:1590,0,1378 2 11264830 rs7560331 G A 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.639;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.70;ReadPosRankSum=0.103;SB=-1.090e+02;SOR=0.549;VQSLOD=9.31;culprit=QD GT:AD:DP:GQ:PL 0/1:27,10:37:99:202,0,754 2 11295867 rs7598570 G C 622.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.66;SB=-3.320e+02;SOR=0.990;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:48:651,48,0 2 11300732 rs2271622 C T 1115.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=0.179;SB=-6.570e+02;SOR=0.692;VQSLOD=9.29;culprit=FS GT:AD:DP:GQ:PL 0/1:54,45:99:99:1144,0,1487 2 11300869 rs6432182 T C 2862.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.53;SB=-1.626e+03;SOR=1.201;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:2891,217,0 2 11300927 . TAAA T 894.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQ0=0;MQRankSum=1.227;POSITIVE_TRAIN_SITE;QD=21.30;RPA=20,17;RU=A;ReadPosRankSum=0.697;SB=-1.980e+02;SOR=0.648;STR;VQSLOD=3.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,30:50:97:879,0,97 2 11304471 . A ATATT 1311.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQ0=0;MQRankSum=2.613;POSITIVE_TRAIN_SITE;QD=28.72;ReadPosRankSum=0.788;SB=-2.173e+02;SOR=0.534;VQSLOD=3.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,24:28:20:1349,0,20 2 11311895 rs190520586 C T 723.78 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=34.47;ReadPosRankSum=0.248;SB=0.00;SOR=4.712;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:1,20:21:24:752,24,0 2 11312181 rs12987956 G A 1367.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.655;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-0.487;SB=-4.790e+02;SOR=0.620;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:54,51:105:99:1396,0,1525 2 11312224 rs3732103 C T 773.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.087;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.005;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=1.105;SB=-2.103e+01;SOR=1.236;VQSLOD=7.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,25:59:99:802,0,991 2 11333994 rs2271621 T G 695.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.788;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.115;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=0.510;SB=-1.950e+02;SOR=0.960;VQSLOD=7.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,25:62:99:724,0,993 2 11356190 rs726843 G A 240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.759;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.974;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.60;ReadPosRankSum=-1.176;SB=-6.700e+01;SOR=0.330;VQSLOD=9.07;culprit=QD GT:AD:DP:GQ:PL 0/1:17,11:28:99:269,0,515 2 11359031 rs9808228 G T 868.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.03;SB=-1.483e+02;SOR=3.258;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:897,72,0 2 11359120 rs2230774 G T 759.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.449;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.927;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-0.154;SB=-4.270e+02;SOR=0.836;VQSLOD=7.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,32:66:99:788,0,813 2 11359300 rs17463952 C T 197.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=-1.033;SB=-6.500e+01;SOR=0.730;VQSLOD=9.05;culprit=FS GT:AD:DP:GQ:PL 0/1:11,8:19:99:226,0,320 2 11492248 . T A 285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.05;ReadPosRankSum=0.920;SB=-7.997e+01;SOR=0.223;VQSLOD=7.93;culprit=SOR GT:AD:DP:GQ:PL 0/1:5,10:15:99:314,0,146 2 11680896 rs34137466 CAA C 353.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.070;DB;DP=17;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.11;RPA=3,1;RU=A;ReadPosRankSum=-0.255;SB=-4.300e+01;SOR=2.093;STR;VQSLOD=5.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,8:17:99:391,0,341 2 11702661 rs10929757 A C 2233.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.860;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.39;ReadPosRankSum=1.528;SB=-1.270e+03;SOR=0.368;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:1,75:76:99:2262,137,0 2 11706850 . C T 2240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.559;DP=155;Dels=0.00;ExcessHet=3.0103;FS=4.030;HaplotypeScore=1.8934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.46;ReadPosRankSum=0.325;SB=-8.090e+02;SOR=1.092;VQSLOD=5.61;culprit=DP GT:AD:DP:GQ:PL 0/1:70,85:155:99:2269,0,1754 2 11718591 rs1529868 C T 654.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.194;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=8.169;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=-0.338;SB=-2.402e+01;SOR=2.712;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 0/1:17,21:38:99:683,0,439 2 11725044 . G A 255.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.25;ReadPosRankSum=0.980;SB=0.00;SOR=1.802;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 0/1:3,8:11:71:284,0,71 2 11725049 rs12468019 T C 60.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.52;ReadPosRankSum=-0.980;SB=0.00;SOR=0.180;VQSLOD=9.18;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:89:89,0,267 2 11725179 . G GA 424.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;DP=53;ExcessHet=3.0103;FS=2.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.49;RPA=11,12;RU=A;ReadPosRankSum=0.612;SB=-1.330e+02;SOR=1.186;STR;VQSLOD=5.40;culprit=QD GT:AD:DP:GQ:PL 0/1:26,24:53:99:462,0,521 2 11725241 rs12470971 G A 1088.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.094;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.738;HaplotypeScore=4.5613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=1.461;SB=-5.730e+02;SOR=0.805;VQSLOD=7.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,45:105:99:1117,0,1522 2 11727507 rs13394619 G A 974.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.175;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=-0.315;SB=-5.620e+02;SOR=0.771;VQSLOD=8.28;culprit=FS GT:AD:DP:GQ:PL 0/1:54,39:93:99:1003,0,1476 2 11731774 rs2358040 T G 104.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=0.608;SB=0.00;SOR=0.412;VQSLOD=9.98;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:133,0,193 2 11736037 rs11679686 A G 326.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.193;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=-0.675;SB=-3.400e+01;SOR=1.609;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:5,10:15:99:355,0,136 2 11738091 rs1435547 T C 6876.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.440;DB;DP=235;Dels=0.00;ExcessHet=3.0103;FS=3.843;HaplotypeScore=2.6566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.26;ReadPosRankSum=-0.428;SB=-3.811e+03;SOR=0.834;VQSLOD=1.35;culprit=DP GT:AD:DP:GQ:PL 1/1:1,234:235:99:6905,484,0 2 11738765 rs1865575 C T 609.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=0.00;SOR=5.892;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:638,51,0 2 11741193 rs11681838 C A 678.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.47;SB=-4.176e+01;SOR=4.514;VQSLOD=7.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:707,54,0 2 11742458 rs72772088 A G 569.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.110;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=3.850;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.717;SB=-5.800e+01;SOR=1.781;VQSLOD=5.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,21:43:99:598,0,587 2 11752635 rs2304399 T C 3382.77 PASS AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.91;SB=-2.117e+03;SOR=0.818;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,117:117:99:3411,253,0 2 11755443 rs2252958 T G 905.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.84;SB=-7.497e+01;SOR=4.255;VQSLOD=7.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:69:934,69,0 2 11757009 rs6735957 A G 1324.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.86;SB=-2.880e+02;SOR=2.554;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1353,99,0 2 11757023 rs892868 C T 570.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.845;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.579;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.30;ReadPosRankSum=0.674;SB=-1.300e+02;SOR=1.136;VQSLOD=7.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,19:33:99:599,0,370 2 11757076 rs3792038 G C 206.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.547;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-0.489;SB=-3.200e+01;SOR=1.022;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:10,8:18:99:235,0,321 2 11757086 rs3792037 G A 210.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-0.944;SB=-3.100e+01;SOR=1.179;VQSLOD=9.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,8:17:99:239,0,280 2 11761309 rs2304401 T C 493.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.363;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.200;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=-0.759;SB=-6.000e+01;SOR=0.301;VQSLOD=10.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,17:35:99:522,0,565 2 11761340 rs67491307 GCTGA G 399.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=-0.113;SB=-1.764e+00;SOR=1.609;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:18:99:437,0,540 2 11774324 rs2304402 G A 1841.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.542;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=2.273;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-0.748;SB=-1.135e+03;SOR=0.484;VQSLOD=9.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:57,74:131:99:1870,0,1431 2 11778184 rs33962728 G A 737.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.554;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.308;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-0.340;SB=-1.210e+02;SOR=1.112;VQSLOD=7.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,28:62:99:766,0,1048 2 11778955 . C T 930.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.115;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.05;ReadPosRankSum=-1.169;SB=-2.700e+02;SOR=0.798;VQSLOD=7.70;culprit=FS GT:AD:DP:GQ:PL 0/1:24,34:58:99:959,0,633 2 11810095 rs6432225 G A 893.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.10;SB=-3.940e+02;SOR=1.302;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:72:922,72,0 2 11853913 rs4614906 G A 1108.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.564;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.004;HaplotypeScore=2.7474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=-0.748;SB=-5.480e+02;SOR=0.463;VQSLOD=10.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,40:74:99:1137,0,817 2 11853964 rs4640359 G A 1066.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.064;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=3.943;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=1.162;SB=-7.210e+02;SOR=0.469;VQSLOD=8.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,46:95:99:1095,0,1057 2 11854012 rs10182021 G A 1058.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.593;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=2.905;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.009;SB=-6.760e+02;SOR=0.393;VQSLOD=10.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,43:86:99:1087,0,1167 2 11905636 rs3214670 GT G 1291.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;DB;DP=105;ExcessHet=3.0103;FS=7.328;MLEAC=1;MLEAF=0.500;MQ=60.10;MQ0=0;MQRankSum=0.893;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.42;RPA=9,8;RU=T;ReadPosRankSum=1.247;SB=-2.700e+02;SOR=1.530;STR;VQSLOD=0.161;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,59:105:99:1329,0,1054 2 11905876 rs10209969 C T 831.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.247;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=3.206;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=-1.375;SB=-4.900e+02;SOR=0.322;VQSLOD=9.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,34:77:99:860,0,1102 2 11924950 rs3795974 T C 724.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=4.583;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.17;ReadPosRankSum=-0.206;SB=-4.410e+02;SOR=0.305;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:48,31:79:99:753,0,1275 2 11931931 . A AT 95.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.38;RPA=9,10;RU=T;ReadPosRankSum=-0.514;SB=-1.768e+00;SOR=1.230;STR;VQSLOD=6.53;culprit=QD GT:AD:DP:GQ:PL 0/1:9,6:15:99:133,0,200 2 11932173 rs7561070 G T 423.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.946;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=-0.853;SB=-5.900e+01;SOR=1.356;VQSLOD=7.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,15:28:99:452,0,349 2 11936798 rs2577264 A G 633.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.277;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=6.226;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=-0.272;SB=-1.205e+02;SOR=0.067;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:18,22:40:99:662,0,544 2 12164120 rs116810853 C T 340.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=0.364;SB=-2.400e+02;SOR=0.693;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:11,15:26:99:369,0,277 2 12864766 rs2288192 C T 737.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.746;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.998;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.133;SB=-4.210e+02;SOR=0.941;VQSLOD=8.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,32:60:99:766,0,774 2 12877307 rs13016883 C G 202.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.824;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.82;ReadPosRankSum=-1.324;SB=-5.600e+01;SOR=1.300;VQSLOD=6.40;culprit=QD GT:AD:DP:GQ:PL 0/1:15,8:23:99:231,0,371 2 12877501 rs33977954 G GA 1452.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.94;ReadPosRankSum=-0.772;SB=-6.460e+02;SOR=0.586;VQSLOD=8.01;culprit=FS GT:AD:DP:GQ:PL 0/1:22,34:56:99:1490,0,823 2 14775229 . G T 1399.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.599;DP=79;Dels=0.00;ExcessHet=3.0103;FS=4.378;HaplotypeScore=1.9964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.72;ReadPosRankSum=-0.618;SB=-6.900e+02;SOR=0.839;VQSLOD=4.20;culprit=FS GT:AD:DP:GQ:PL 0/1:31,48:79:99:1428,0,833 2 15378822 rs112030097 G GAATT 420.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.30;ReadPosRankSum=-1.704;SB=0.00;SOR=1.022;VQSLOD=8.30;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:13:99:458,0,310 2 15471002 rs6759219 C A 330.41 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.648;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.04;ReadPosRankSum=-0.634;SB=0.00;SOR=3.442;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 0/1:1,10:11:8:358,0,8 2 15491994 . GCACACACACACA GCA,G 3873.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.01;RPA=17,12,11;RU=CA;SB=-1.233e+03;SOR=1.681;STR;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/2:0,24,8:34:99:3911,306,210,1013,0,953 2 15493881 rs2277915 A G 1941.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.67;SB=-4.540e+02;SOR=2.753;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:57:99:1970,144,0 2 15519992 rs2058866 G T 1300.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-3.930e+02;SOR=2.356;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1329,99,0 2 15523266 rs6756934 A T 1241.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.56;SB=-1.901e+02;SOR=3.442;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:96:1270,96,0 2 15523307 rs3834149 TA T 1289.73 PASS AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.87;RPA=9,8;RU=A;SB=-4.860e+02;SOR=1.426;STR;VQSLOD=5.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:49:99:1327,144,0 2 15523549 rs3755129 T C 948.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.23;SB=-8.197e+01;SOR=4.174;VQSLOD=3.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:72:977,72,0 2 15533689 rs2380650 T C 600.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.43;SB=0.00;SOR=5.670;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:629,48,0 2 15533734 rs71994225 G GAAATGAAAGCGTATGTCTACAC 3090.73 PASS AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.42;RPA=1,2;RU=AAATGAAAGCGTATGTCTACAC;SB=0.00;SOR=5.283;STR;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:20:39:3128,39,0 2 15533779 rs9710889 G A 1811.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.76;SB=-1.082e+03;SOR=0.933;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1840,132,0 2 15533884 rs9710962 C A 1142.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.57;SB=-5.130e+02;SOR=1.609;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:84:1171,84,0 2 15533895 rs13417550 A G 983.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.81;SB=-3.680e+02;SOR=1.981;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:75:1012,75,0 2 15533899 rs11689153 A G 994.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.16;SB=-2.920e+02;SOR=2.303;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:75:1023,75,0 2 15542159 rs6733647 A G 459.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.08;SB=0.00;SOR=5.136;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:488,36,0 2 15567649 rs3796002 T C 1199.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-2.431e+02;SOR=2.774;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:90:1228,90,0 2 15601287 rs33963439 A AT 1391.73 PASS AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.15;SB=-3.450e+02;SOR=2.303;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:90:1429,90,0 2 15601441 rs7590340 C T 1364.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-6.020e+02;SOR=1.455;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1393,105,0 2 15601574 rs7590458 C T 342.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.56;SB=-4.276e+01;SOR=3.611;VQSLOD=7.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:371,30,0 2 15607842 rs4668909 T C 2009.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.31;SB=-1.411e+03;SOR=0.721;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2038,144,0 2 15613678 rs11898971 T C 477.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.10;SB=-2.031e+02;SOR=1.739;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:36:506,36,0 2 15613715 rs11893303 G A 344.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.34;SB=-7.597e+01;SOR=2.494;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:373,27,0 2 15614404 rs13014906 T C 2361.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=-1.178e+03;SOR=1.281;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2390,175,0 2 15615704 rs35237017 T C 436.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;SB=0.00;SOR=5.136;VQSLOD=8.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:465,36,0 2 15615910 rs1990754 A G 3031.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9949;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-1.812e+03;SOR=0.713;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:3060,232,0 2 15616013 rs1990755 C G 1876.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-5.940e+02;SOR=2.265;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1905,144,0 2 15616030 rs1990756 C T 1713.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-2.960e+02;SOR=3.342;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1742,138,0 2 15618339 rs1125534 G A 1137.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.94;SB=-3.800e+02;SOR=2.073;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:87:1166,87,0 2 15623608 rs10201564 C G 521.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.78;SB=-4.176e+01;SOR=4.047;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:550,42,0 2 15644107 rs3732002 C A 918.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.22;SB=0.00;SOR=6.518;VQSLOD=8.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:72:947,72,0 2 15644111 rs3732003 C T 977.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.92;SB=-3.677e+01;SOR=5.283;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:81:1006,81,0 2 15644401 rs2287265 C T 1605.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.17;SB=-1.623e+02;SOR=4.362;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:49:99:1634,126,0 2 15674686 rs13029846 T C 3021.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8097;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-1.961e+03;SOR=0.795;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:3050,217,0 2 15676686 rs10208972 G A 1570.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-3.100e+02;SOR=2.925;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1599,123,0 2 15678482 rs2380657 T C 720.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.03;SB=-3.750e+02;SOR=1.270;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:54:749,54,0 2 15678501 rs66736557 GA G 624.73 PASS AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.03;RPA=9,8;RU=A;SB=-2.810e+02;SOR=1.051;STR;VQSLOD=5.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:72:662,72,0 2 15679609 rs2058868 A T 477.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=0.00;SOR=5.283;VQSLOD=7.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:14:39:506,39,0 2 15691886 rs7572131 G A 845.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.01;SB=0.00;SOR=6.273;VQSLOD=7.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:874,66,0 2 15694164 rs144766275 T TA 1469.73 PASS AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.63;SB=-5.640e+02;SOR=1.402;VQSLOD=4.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:93:1507,93,0 2 15731998 rs10221770 A G 258.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=0.553;SB=-1.810e+02;SOR=0.399;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:6,11:17:99:287,0,157 2 15735648 rs2302929 T C 489.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.747;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.16;ReadPosRankSum=-0.115;SB=-3.460e+02;SOR=0.693;VQSLOD=9.33;culprit=QD GT:AD:DP:GQ:PL 0/1:38,22:60:99:518,0,963 2 15736697 rs2032778 G A 665.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.002;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=0.171;SB=-4.300e+02;SOR=0.233;VQSLOD=9.73;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,27:42:99:694,0,418 2 15746220 rs41264195 C T 909.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=6.298;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.84;ReadPosRankSum=-1.090;SB=-3.290e+02;SOR=1.546;VQSLOD=5.71;culprit=FS GT:AD:DP:GQ:PL 0/1:20,31:51:99:938,0,494 2 15747390 . G A 851.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.389;DP=63;Dels=0.00;ExcessHet=3.0103;FS=4.975;HaplotypeScore=2.8086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.52;ReadPosRankSum=0.200;SB=-3.750e+02;SOR=1.322;VQSLOD=5.53;culprit=FS GT:AD:DP:GQ:PL 0/1:29,34:63:99:880,0,852 2 15747393 rs10929378 C T 703.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.610;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=3.495;HaplotypeScore=1.9145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=-0.431;SB=-4.350e+02;SOR=0.344;VQSLOD=10.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,30:64:99:732,0,912 2 15753279 rs2302934 C G 453.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.211;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=1.387;SB=-1.350e+02;SOR=0.569;VQSLOD=9.05;culprit=FS GT:AD:DP:GQ:PL 0/1:25,19:44:99:482,0,658 2 15757226 rs11305723 CT C 89.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.345;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.97;RPA=12,11;RU=T;ReadPosRankSum=2.345;SB=0.00;SOR=1.085;STR;VQSLOD=8.51;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,6:10:81:127,0,81 2 15768981 rs62122280 C G 302.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.635;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.691;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.90;ReadPosRankSum=0.230;SB=-5.400e+01;SOR=1.402;VQSLOD=6.08;culprit=QD GT:AD:DP:GQ:PL 0/1:21,13:34:99:331,0,592 2 15769607 rs807635 C T 361.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.073;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.10;ReadPosRankSum=1.088;SB=0.00;SOR=1.179;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:390,0,217 2 15840505 rs4668460 C A 923.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.127;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=0.591;SB=-5.590e+02;SOR=0.849;VQSLOD=9.10;culprit=FS GT:AD:DP:GQ:PL 0/1:38,39:77:99:952,0,1065 2 15840522 rs4668461 G T 879.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.691;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=1.037;SB=-5.460e+02;SOR=0.648;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 0/1:41,36:77:99:908,0,1115 2 15840623 rs58183965 A G 925.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.115;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=0.353;SB=-4.620e+02;SOR=0.748;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 0/1:33,37:70:99:954,0,805 2 15840645 rs4668962 T C 763.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.649;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=0.565;SB=-3.220e+02;SOR=0.648;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 0/1:34,30:64:99:792,0,857 2 15841230 rs1421610 T A 227.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=-0.375;SB=0.00;SOR=0.976;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:256,0,197 2 15841288 rs1421609 G A 602.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.973;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.590;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=0.329;SB=-1.510e+02;SOR=0.272;VQSLOD=10.41;culprit=SOR GT:AD:DP:GQ:PL 0/1:18,23:41:99:631,0,538 2 16734284 rs12997119 T C 1095.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.758;HaplotypeScore=1.9466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=0.225;SB=-6.570e+02;SOR=0.845;VQSLOD=7.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,46:99:99:1124,0,1320 2 16734405 rs145427230 C A 440.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.547;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=-0.138;SB=-3.201e+01;SOR=0.693;VQSLOD=9.90;culprit=FS GT:AD:DP:GQ:PL 0/1:14,14:28:99:469,0,455 2 16743453 rs6751062 A C 2129.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-8.620e+02;SOR=1.644;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2158,169,0 2 16746897 rs62122698 C G 585.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.034;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.156;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=0.716;SB=-1.060e+02;SOR=0.247;VQSLOD=9.43;culprit=SOR GT:AD:DP:GQ:PL 0/1:17,20:37:99:614,0,573 2 17466012 rs1976809 T C 819.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=3.387;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-1.855;SB=-5.300e+02;SOR=0.358;VQSLOD=9.79;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:34,35:69:99:848,0,975 2 17466075 rs10208884 A G 1453.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.04;SB=-4.740e+02;SOR=1.828;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1482,108,0 2 17696573 rs834514 C T 542.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.583;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.852;HaplotypeScore=2.6624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.77;ReadPosRankSum=0.798;SB=-3.660e+02;SOR=0.786;VQSLOD=5.34;culprit=QD GT:AD:DP:GQ:PL 0/1:66,28:94:99:571,0,1704 2 17698678 rs665312 A G 647.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.737;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.055;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=-0.477;SB=-4.210e+02;SOR=0.473;VQSLOD=10.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,25:54:99:676,0,719 2 17773524 rs2680827 G A 1319.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.19;SB=-3.750e+02;SOR=2.247;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1348,102,0 2 17913266 rs2052746 A C 1295.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.81;SB=-1.871e+02;SOR=3.442;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:96:1324,96,0 2 17941423 rs2555072 T G 1322.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.81;SB=-1.931e+02;SOR=3.500;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1351,99,0 2 17942775 rs1812152 T A 2471.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.41;SB=-1.444e+03;SOR=1.030;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2500,187,0 2 17954027 rs300175 G A 1125.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-4.400e+02;SOR=1.739;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:87:1154,87,0 2 17954140 rs300176 A G 373.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.51;SB=-1.195e+02;SOR=1.609;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:402,30,0 2 17954421 rs300177 C G 1262.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.07;SB=-6.870e+02;SOR=1.127;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:93:1291,93,0 2 17959420 rs10535305 TAC T 831.73 PASS AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.34;RPA=5,4;RU=AC;SB=-1.873e+02;SOR=2.531;STR;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:23:60:869,60,0 2 17959443 rs71402623 A G 133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.594;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=4.260;HaplotypeScore=8.6986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.36;ReadPosRankSum=0.760;SB=-4.276e+01;SOR=0.072;VQSLOD=7.78;culprit=QD GT:AD:DP:GQ:PL 0/1:10,6:16:99:162,0,341 2 17959452 rs202134229 TATAC T 447.74 PASS AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.58;SB=0.00;SOR=4.804;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:15:28:485,28,0 2 17959464 rs10535307 CAT C 644.73 PASS AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.21;RPA=3,2;RU=AT;SB=0.00;SOR=5.421;STR;VQSLOD=7.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:682,42,0 2 17959486 rs10535308 TAC T 206.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.79;RPA=4,3;RU=AC;ReadPosRankSum=1.158;SB=0.00;SOR=0.859;STR;VQSLOD=8.26;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:13:99:244,0,200 2 17962450 rs300168 A G 1961.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-1.155e+03;SOR=0.933;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1990,144,0 2 17962518 rs300169 C T 1878.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=-1.123e+03;SOR=0.693;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1907,144,0 2 17998025 rs34069439 A T 886.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.517;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=5.150;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=-0.399;SB=-4.590e+02;SOR=0.285;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:32,31:63:99:915,0,1020 2 17998095 rs35858730 C T 871.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.933;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.760;SB=-3.350e+02;SOR=0.803;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:28,33:61:99:900,0,900 2 17998331 rs13001625 T C 1188.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.554;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=2.569;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=1.119;SB=-5.510e+02;SOR=0.979;VQSLOD=7.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,44:106:99:1217,0,1535 2 18112473 rs4240213 G A 5804.77 PASS AC=2;AF=1.00;AN=2;DB;DP=193;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;SB=-3.216e+03;SOR=0.859;VQSLOD=5.62;culprit=DP GT:AD:DP:GQ:PL 1/1:0,193:193:99:5833,436,0 2 18113623 rs4832524 A G 3703.77 PASS AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.39;SB=-2.007e+03;SOR=0.976;VQSLOD=5.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,126:126:99:3732,271,0 2 18736812 . C A 652.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.877;DP=73;Dels=0.00;ExcessHet=3.0103;FS=6.562;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-0.436;SB=-1.840e+02;SOR=1.483;VQSLOD=4.32;culprit=FS GT:AD:DP:GQ:PL 0/1:48,25:73:99:681,0,1237 2 18757501 rs3902946 G C 832.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.142;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=0.077;SB=-3.300e+02;SOR=0.803;VQSLOD=7.21;culprit=QD GT:AD:DP:GQ:PL 0/1:59,36:95:99:861,0,1569 2 18768850 rs16985306 A G 1250.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.133;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=1.797;SB=-5.150e+02;SOR=0.718;VQSLOD=8.74;culprit=FS GT:AD:DP:GQ:PL 0/1:60,52:112:99:1279,0,1630 2 18770540 rs6720633 G C 330.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.895;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.935;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=1.100;SB=-8.497e+01;SOR=0.191;VQSLOD=9.33;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,12:19:99:359,0,226 2 19552389 rs851066 T C 404.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.73;SB=0.00;SOR=5.136;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:433,36,0 2 20101363 rs7584726 G A 381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=-4.176e+01;SOR=3.442;VQSLOD=7.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:410,33,0 2 20131184 rs1191779 C A 909.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-2.211e+02;SOR=2.546;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:69:938,69,0 2 20131987 rs4294960 T C 722.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-1.195e+02;SOR=3.352;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:751,57,0 2 20135283 rs6741091 T C 2809.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-1.802e+03;SOR=0.778;VQSLOD=7.41;culprit=DP GT:AD:DP:GQ:PL 1/1:0,96:96:99:2838,205,0 2 20160250 rs12996974 G C 1038.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;SB=-2.850e+02;SOR=2.165;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:78:1067,78,0 2 20173255 rs10153717 A C 1046.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.77;SB=-2.031e+02;SOR=3.056;VQSLOD=7.83;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,31:31:78:1075,78,0 2 20175312 rs34169020 G A 1580.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.245;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=3.655;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-0.591;SB=-4.340e+02;SOR=1.122;VQSLOD=7.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:70,59:129:99:1609,0,1792 2 20188765 rs13035048 C T 437.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.48;SB=0.00;SOR=5.136;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:466,36,0 2 20189089 rs3731663 C T 2185.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-7.830e+02;SOR=1.885;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2214,166,0 2 20192696 rs7569975 G A 839.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.88;SB=-4.076e+01;SOR=4.892;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:66:868,66,0 2 20192931 rs35973216 G A 1457.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.58;SB=-5.830e+02;SOR=1.848;VQSLOD=5.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1486,111,0 2 20194036 rs3820949 G C 2950.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-1.495e+03;SOR=1.203;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:2979,214,0 2 20202811 rs11681705 A G 826.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.386;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.215;HaplotypeScore=3.5133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=-0.652;SB=-2.350e+02;SOR=0.507;VQSLOD=9.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,32:60:99:855,0,755 2 20202929 rs28452699 C T 2727.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.294;DB;DP=181;Dels=0.00;ExcessHet=3.0103;FS=1.202;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=0.435;SB=-1.189e+03;SOR=0.804;VQSLOD=7.65;culprit=DP GT:AD:DP:GQ:PL 0/1:82,99:181:99:2756,0,2241 2 20205680 rs28401180 C T 7837.77 PASS AC=2;AF=1.00;AN=2;DB;DP=249;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4090;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-4.664e+03;SOR=0.802;VQSLOD=4.36;culprit=DP GT:AD:DP:GQ:PL 1/1:0,249:249:99:7866,581,0 2 20205848 rs28598872 G A 7780.77 PASS AC=2;AF=1.00;AN=2;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3183;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=-4.483e+03;SOR=0.883;VQSLOD=4.36;culprit=DP GT:AD:DP:GQ:PL 1/1:0,250:250:99:7809,572,0 2 20233929 rs936509 C T 204.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.233;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-2.278;SB=-9.732e-01;SOR=2.303;VQSLOD=5.07;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,7:16:99:233,0,245 2 20302466 rs188327208 G A 40.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.74;MQ0=0;MQRankSum=-0.978;POSITIVE_TRAIN_SITE;QD=2.72;ReadPosRankSum=-1.231;SB=-1.765e+00;SOR=0.368;VQSLOD=3.07;culprit=QD GT:AD:DP:GQ:PL 0/1:12,3:15:69:69,0,389 2 20302472 . G A 77.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.899;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.88;MQ0=0;MQRankSum=-0.740;QD=4.86;ReadPosRankSum=-1.764;SB=-1.765e+00;SOR=0.527;VQSLOD=1.83;culprit=QD GT:AD:DP:GQ:PL 0/1:12,4:16:99:106,0,398 2 20302478 rs148032589 G A 82.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.888;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.6651;MLEAC=1;MLEAF=0.500;MQ=57.88;MQ0=0;MQRankSum=-0.740;POSITIVE_TRAIN_SITE;QD=5.17;ReadPosRankSum=-1.764;SB=-1.766e+00;SOR=0.527;VQSLOD=3.04;culprit=QD GT:AD:DP:GQ:PL 0/1:12,4:16:99:111,0,400 2 20302484 rs62112186 G A 79.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=34.7943;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=-0.810;POSITIVE_TRAIN_SITE;QD=4.69;ReadPosRankSum=-1.365;SB=0.00;SOR=0.465;VQSLOD=3.09;culprit=QD GT:AD:DP:GQ:PL 0/1:13,4:17:99:108,0,417 2 20302487 . AAGG A 624.90 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=2.746;NEGATIVE_TRAIN_SITE;QD=36.16;ReadPosRankSum=-0.582;SB=-5.376e+01;SOR=2.584;VQSLOD=0.620;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:1,14:17:14:662,0,14 2 20302527 rs12612373 C A,T 1001.77 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.428;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3863;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.58;MQ0=0;MQRankSum=-0.115;POSITIVE_TRAIN_SITE;QD=25.04;ReadPosRankSum=-0.062;SB=-2.650e+02;SOR=1.487;VQSLOD=5.52;culprit=MQRankSum GT:AD:DP:GQ:PL 1/2:2,16,22:40:99:1030,554,515,476,0,431 2 20320478 rs370094491 AAG A 202.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.14;ReadPosRankSum=0.988;SB=0.00;SOR=0.527;VQSLOD=8.36;culprit=FS GT:AD:DP:GQ:PL 0/1:11,9:20:99:240,0,312 2 20401858 rs11350492 TA T 197.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.41;RPA=17,16;RU=A;ReadPosRankSum=0.400;SB=-8.651e+01;SOR=0.412;STR;VQSLOD=8.21;culprit=FS GT:AD:DP:GQ:PL 0/1:4,15:21:52:235,0,52 2 20403794 rs10205485 A T 1473.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;SB=-8.240e+02;SOR=0.909;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1502,108,0 2 20405050 rs6531225 A C 1146.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.76;SB=-1.951e+02;SOR=2.964;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:87:1175,87,0 2 20423154 rs4666375 A G 943.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9976;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.60;SB=-4.720e+02;SOR=1.352;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:69:972,69,0 2 20440321 rs2072465 C T 250.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.410;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.799;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=0.712;SB=-6.200e+01;SOR=1.193;VQSLOD=7.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,11:25:99:279,0,362 2 20494212 . C A 1106.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.765;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.66;ReadPosRankSum=0.633;SB=-4.970e+02;SOR=0.631;VQSLOD=8.04;culprit=FS GT:AD:DP:GQ:PL 0/1:40,41:81:99:1135,0,1083 2 20699667 rs342089 C G 831.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-1.235e+02;SOR=3.611;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:69:860,69,0 2 20700786 rs961496 C T 516.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.703;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=-1.459;SB=-6.200e+01;SOR=0.749;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:33,20:53:99:545,0,1005 2 20700900 rs342088 A G 3294.77 PASS AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-2.044e+03;SOR=0.907;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,111:112:99:3323,238,0 2 20729143 rs72362297 C CTT 137.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.84;RPA=13,15;RU=T;ReadPosRankSum=0.560;SB=-1.793e+00;SOR=1.828;STR;VQSLOD=7.99;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:15:99:175,0,191 2 20818286 rs3821217 A C 580.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-2.001e+02;SOR=1.493;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:609,45,0 2 20818454 rs3732152 T A 1350.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6688;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.77;SB=-7.360e+02;SOR=0.693;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1379,105,0 2 20818458 rs3732151 G A 590.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.917;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=0.458;SB=-3.090e+02;SOR=0.602;VQSLOD=10.15;culprit=FS GT:AD:DP:GQ:PL 0/1:19,22:41:99:619,0,553 2 20818517 rs3732150 T C 613.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.555;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=3.855;HaplotypeScore=11.3393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=-0.574;SB=-4.060e+02;SOR=0.335;VQSLOD=9.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,27:62:99:642,0,841 2 20822218 rs4666444 T C 736.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-2.780e+02;SOR=1.708;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:765,60,0 2 20823612 rs13030108 A G 408.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;SB=-1.653e+02;SOR=1.609;VQSLOD=7.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:437,33,0 2 20823724 rs6531248 T C 480.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;SB=-2.720e+02;SOR=0.941;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:39:509,39,0 2 20823816 rs2305460 G T 90.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.222;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.246;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.67;ReadPosRankSum=-0.681;SB=-4.700e+01;SOR=0.774;VQSLOD=4.45;culprit=QD GT:AD:DP:GQ:PL 0/1:11,5:16:99:119,0,301 2 20823850 rs6733419 T C 336.78 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.06;SB=-2.311e+02;SOR=0.976;VQSLOD=4.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:27:365,27,0 2 20823858 rs2305459 C T 186.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=-0.376;SB=-1.000e+02;SOR=1.179;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:215,0,107 2 20824498 rs2305458 C T 729.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=2.040;HaplotypeScore=2.9888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.00;ReadPosRankSum=0.914;SB=-3.030e+02;SOR=1.081;VQSLOD=7.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,30:73:99:758,0,1195 2 20824559 rs2305457 C T 1472.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=3.908;HaplotypeScore=2.8487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=0.734;SB=-8.160e+02;SOR=0.384;VQSLOD=9.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,54:97:99:1501,0,1121 2 20824658 rs10199441 G A 1460.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.059;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=2.411;HaplotypeScore=3.2762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-1.838;SB=-7.270e+02;SOR=0.966;VQSLOD=7.63;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:58,57:115:99:1489,0,1425 2 20824691 rs17663045 C T 1187.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.632;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=2.702;HaplotypeScore=3.1800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-0.383;SB=-7.680e+02;SOR=0.436;VQSLOD=9.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,53:100:99:1216,0,1217 2 20824708 rs10191266 T C 894.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.813;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=2.104;SB=-3.720e+02;SOR=0.742;VQSLOD=8.48;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:44,36:80:99:923,0,1133 2 20838318 rs3796064 G A 1534.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=-0.826;SB=-8.610e+02;SOR=0.646;VQSLOD=9.00;culprit=FS GT:AD:DP:GQ:PL 0/1:70,61:131:99:1563,0,1811 2 20841059 rs4666449 C T 159.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.785;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=5.280;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.51;ReadPosRankSum=-0.051;SB=-1.352e-01;SOR=2.093;VQSLOD=5.31;culprit=QD GT:AD:DP:GQ:PL 0/1:22,7:29:99:188,0,655 2 20845273 rs2304423 G A 1096.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.255;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.942;HaplotypeScore=2.7648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=-1.224;SB=-3.900e+02;SOR=0.481;VQSLOD=10.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,40:78:99:1125,0,1020 2 20870018 rs1865679 T G 469.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.28;SB=-4.276e+01;SOR=3.611;VQSLOD=4.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:498,36,0 2 20870031 rs13013895 C G 293.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.102;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.590;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.36;ReadPosRankSum=1.203;SB=-1.765e+00;SOR=2.215;VQSLOD=5.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,9:16:99:322,0,219 2 20870579 rs13013489 G A 315.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-7.997e+01;SOR=2.303;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:344,27,0 2 20871190 rs4666457 A C 1718.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-1.185e+02;SOR=5.018;VQSLOD=5.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1747,144,0 2 20884546 rs10171934 A C 887.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=2.109;SB=-4.650e+02;SOR=0.691;VQSLOD=7.96;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:51,34:85:99:916,0,1365 2 20884586 rs10182643 G C 1126.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.871;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=-0.600;SB=-7.540e+02;SOR=0.704;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:55,45:100:99:1155,0,1534 2 20939706 rs2046325 T C 419.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.454;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.488;HaplotypeScore=2.4385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=0.587;SB=-9.700e+01;SOR=1.516;VQSLOD=6.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,16:34:99:448,0,484 2 20939708 rs653347 C T 417.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.364;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.488;HaplotypeScore=1.6498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.708;SB=-8.600e+01;SOR=1.516;VQSLOD=7.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,16:34:99:446,0,451 2 21225281 rs1042034 C T 1160.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.981;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.833;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.270;SB=-5.530e+02;SOR=0.587;VQSLOD=9.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,38:81:99:1189,0,1338 2 21225753 rs1042031 C T 1804.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.445;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=-2.905;SB=-1.101e+03;SOR=0.645;VQSLOD=8.33;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:58,69:128:99:1833,0,1750 2 21227383 rs1800479 C G 998.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.086;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.873;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=1.124;SB=-5.670e+02;SOR=0.534;VQSLOD=9.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,36:76:99:1027,0,1127 2 21231271 . A G 730.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.816;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.21;ReadPosRankSum=1.646;SB=-4.890e+02;SOR=0.597;VQSLOD=6.97;culprit=QD GT:AD:DP:GQ:PL 0/1:57,32:89:99:759,0,1602 2 21231377 . C A 656.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.331;DP=77;Dels=0.00;ExcessHet=3.0103;FS=2.006;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.53;ReadPosRankSum=0.151;SB=-3.010e+02;SOR=0.995;VQSLOD=5.54;culprit=QD GT:AD:DP:GQ:PL 0/1:51,26:77:99:685,0,1393 2 21231524 rs676210 G A 1413.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.578;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.774;HaplotypeScore=2.5575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=1.689;SB=-7.930e+02;SOR=0.907;VQSLOD=7.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,57:99:99:1442,0,1229 2 21232803 rs584542 T C 1872.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.81;SB=-8.500e+02;SOR=1.437;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:1901,144,0 2 21235475 rs568413 T C 2905.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.65;SB=-1.329e+03;SOR=1.338;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2934,214,0 2 21236482 rs488329 A G 624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7291;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.40;SB=-2.441e+02;SOR=1.931;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:48:653,48,0 2 21237238 rs3749054 A T 60.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.52;ReadPosRankSum=-0.301;SB=-1.765e+00;SOR=0.693;VQSLOD=8.80;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:89:89,0,238 2 21237544 rs673548 G A 745.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.352;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.758;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=-0.180;SB=-6.200e+01;SOR=1.395;VQSLOD=7.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,24:49:99:774,0,764 2 21241744 rs12720828 C T 992.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.034;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.996;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.101;SB=-3.200e+02;SOR=0.542;VQSLOD=10.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,37:75:99:1021,0,1031 2 21250914 rs679899 G A 1661.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.21;SB=-6.260e+02;SOR=1.877;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1690,129,0 2 21251040 rs570877 T G 2210.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.54;SB=-6.940e+02;SOR=1.963;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2239,166,0 2 21252365 rs67556837 GAGGA G 977.73 PASS AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=63.87;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.08;RPA=7,6;RU=AGGA;SB=0.00;SOR=5.994;STR;VQSLOD=8.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:1015,57,0 2 21255573 rs66636284 C CCATCT 2148.73 PASS AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.91;SB=-1.800e+02;SOR=4.174;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:27:75:2186,75,0 2 21263639 rs531819 T G 1299.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.67;SB=0.00;SOR=7.112;VQSLOD=5.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:99:1328,102,0 2 21265141 rs661665 C A 727.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.01;SB=0.00;SOR=5.994;VQSLOD=8.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:756,57,0 2 21360583 rs312966 A G 824.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.045;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-1.157;SB=-4.090e+02;SOR=0.719;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:30,33:63:99:853,0,795 2 21366154 rs140954522 T G 262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.52;ReadPosRankSum=0.343;SB=-4.176e+01;SOR=0.346;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:291,0,177 2 23621521 rs7560798 T C 150.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.585;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-0.154;SB=-2.701e+01;SOR=1.445;VQSLOD=9.10;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:179,0,159 2 23621739 rs56227367 TTGA T 290.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;DB;DP=22;ExcessHet=3.0103;FS=1.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;RPA=3,2;RU=TGA;ReadPosRankSum=-1.692;SB=-1.410e+02;SOR=0.719;STR;VQSLOD=5.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,7:22:99:328,0,831 2 23755208 rs748857 A G 64.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.037;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.48;ReadPosRankSum=0.319;SB=0.00;SOR=0.223;VQSLOD=9.52;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:93:93,0,248 2 23785517 rs4665225 A G 457.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-1.483e+02;SOR=1.911;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:486,36,0 2 23785524 rs11686638 C A 467.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-1.573e+02;SOR=1.911;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:496,36,0 2 23860238 rs75133321 G A 736.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.289;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=3.654;HaplotypeScore=2.8617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-0.268;SB=-2.140e+02;SOR=1.426;VQSLOD=6.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,30:71:99:765,0,1100 2 23862187 rs540290 C G 1361.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=1.830;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=1.495;SB=-4.890e+02;SOR=0.507;VQSLOD=9.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,49:92:99:1390,0,1166 2 23865014 rs497973 G A 600.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.924;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.185;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=-0.601;SB=-2.020e+02;SOR=0.910;VQSLOD=7.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,23:50:99:629,0,772 2 23865260 rs642931 T C 3792.77 PASS AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9928;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.73;SB=-2.152e+03;SOR=1.119;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,132:132:99:3821,286,0 2 23865908 rs527176 G C 1304.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.107;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=7.411;HaplotypeScore=52.1226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=0.798;SB=-6.220e+02;SOR=0.368;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 0/1:44,52:96:99:1333,0,1005 2 23907211 . TA T 353.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;DP=42;ExcessHet=3.0103;FS=4.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.42;RPA=13,12;RU=A;ReadPosRankSum=0.202;SB=-9.114e+01;SOR=0.163;STR;VQSLOD=8.01;culprit=QD GT:AD:DP:GQ:PL 0/1:19,23:42:99:391,0,394 2 23919375 rs3795942 C T 510.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=-0.818;SB=-6.400e+01;SOR=1.022;VQSLOD=10.34;culprit=FS GT:AD:DP:GQ:PL 0/1:14,18:32:99:539,0,336 2 23925980 rs12466745 T C 375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.406;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=4.465;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=1.259;SB=-1.510e+02;SOR=0.177;VQSLOD=9.50;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,14:24:99:404,0,298 2 23926659 rs3795948 T C 970.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.945;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=6.469;HaplotypeScore=1.8519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=0.461;SB=-5.350e+02;SOR=0.944;VQSLOD=4.63;culprit=FS GT:AD:DP:GQ:PL 0/1:61,41:102:99:999,0,1484 2 23977377 rs56218741 A C 444.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=0.165;SB=-3.500e+01;SOR=0.963;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:11,14:25:99:473,0,358 2 24005662 rs140638944 A C 441.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.805;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-0.234;SB=-1.240e+02;SOR=0.250;VQSLOD=9.31;culprit=SOR GT:AD:DP:GQ:PL 0/1:19,19:38:99:470,0,535 2 24009163 rs9636434 A G 278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.148;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=2.336;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.29;ReadPosRankSum=-1.342;SB=-6.300e+01;SOR=0.202;VQSLOD=8.92;culprit=SOR GT:AD:DP:GQ:PL 0/1:20,10:30:99:307,0,658 2 24021231 rs17509001 T C 958.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.741;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=2.889;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=0.709;SB=-2.290e+02;SOR=0.294;VQSLOD=10.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,35:69:99:987,0,978 2 24042550 rs2879639 C T 1423.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.36;SB=-3.390e+02;SOR=2.636;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1452,105,0 2 24054954 rs149851014 G A 647.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.770;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.10;ReadPosRankSum=0.390;SB=-3.070e+02;SOR=0.628;VQSLOD=8.53;culprit=QD GT:AD:DP:GQ:PL 0/1:51,29:80:99:676,0,1317 2 24055058 rs10432637 G C 3673.77 PASS AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3537;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-2.189e+03;SOR=0.874;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,118:118:99:3702,265,0 2 24056789 . C T 424.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.083;DP=49;Dels=0.00;ExcessHet=3.0103;FS=14.842;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.67;ReadPosRankSum=1.446;SB=-3.430e+02;SOR=0.072;VQSLOD=3.05;culprit=FS GT:AD:DP:GQ:PL 0/1:28,21:49:99:453,0,761 2 24087621 rs72788214 A C 360.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.436;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=-0.634;SB=-4.276e+01;SOR=0.446;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:7,12:19:99:389,0,225 2 24087857 rs12623316 A G 420.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.144;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-0.739;SB=-5.800e+01;SOR=0.941;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:17,16:33:99:449,0,478 2 24095285 rs72788278 A C 503.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.400;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=5.519;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.90;ReadPosRankSum=-0.284;SB=-2.600e+02;SOR=1.061;VQSLOD=5.44;culprit=FS GT:AD:DP:GQ:PL 0/1:4,19:23:99:532,0,99 2 24095379 rs202226118 CA C 604.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;DB;DP=27;ExcessHet=3.0103;FS=8.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.40;RPA=4,3;RU=A;ReadPosRankSum=1.080;SB=-2.440e+02;SOR=0.069;STR;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 0/1:6,21:27:99:642,0,126 2 24108652 rs7579201 T C 2769.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-1.390e+03;SOR=1.046;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2798,211,0 2 24110911 . G GA 106.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;DP=17;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;RPA=10,11;RU=A;ReadPosRankSum=-1.465;SB=-1.772e+00;SOR=2.584;STR;VQSLOD=5.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,6:17:78:144,0,78 2 24181159 rs12616678 G T 296.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.232;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-1.707;SB=-1.390e+02;SOR=0.722;VQSLOD=10.12;culprit=FS GT:AD:DP:GQ:PL 0/1:9,12:21:99:325,0,237 2 24194314 rs1533440 C T 224.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.379;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.834;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.75;ReadPosRankSum=-1.125;SB=-5.000e+01;SOR=1.802;VQSLOD=5.71;culprit=QD GT:AD:DP:GQ:PL 0/1:19,10:29:99:253,0,467 2 24206099 rs139133481 G T 501.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.405;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=-0.787;SB=-3.300e+01;SOR=1.143;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:13,19:32:99:530,0,431 2 24244317 rs77883321 G A 238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.676;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=-0.514;SB=0.00;SOR=1.112;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:267,0,198 2 24246175 rs12989842 C T 1845.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.84;SB=-7.300e+02;SOR=1.963;VQSLOD=5.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:1874,138,0 2 24246679 rs925228 A G 2865.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-7.210e+02;SOR=2.330;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2894,217,0 2 24255653 rs76647179 G T 1625.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.356;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=1.479;HaplotypeScore=7.3573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-0.405;SB=-7.380e+02;SOR=0.911;VQSLOD=7.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,62:124:99:1654,0,1608 2 24255862 rs10179142 C G 1401.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.60;SB=-3.690e+02;SOR=2.584;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1430,108,0 2 24256071 rs17763463 T C 1120.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.697;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=1.782;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-1.211;SB=-7.900e+02;SOR=0.646;VQSLOD=8.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,48:85:99:1149,0,827 2 24261993 . T C 1907.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.995;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.670;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.24;ReadPosRankSum=1.118;SB=-7.700e+02;SOR=0.815;VQSLOD=6.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:70,64:134:99:1936,0,1871 2 24369674 rs11693860 C T 989.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.883;HaplotypeScore=5.1267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=0.185;SB=-5.420e+02;SOR=0.550;VQSLOD=9.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,41:78:99:1018,0,973 2 24384424 rs4665667 T C 361.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.412;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.471;SB=-2.660e+02;SOR=0.340;VQSLOD=9.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,16:32:99:390,0,451 2 24387178 . G GC 1601.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.28;RPA=1,2;RU=C;ReadPosRankSum=1.595;SB=-4.760e+02;SOR=0.804;STR;VQSLOD=8.44;culprit=FS GT:AD:DP:GQ:PL 0/1:38,41:80:99:1639,0,1518 2 24388096 rs4665668 G A 683.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.469;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-0.738;SB=-2.040e+02;SOR=0.381;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:32,27:59:99:712,0,884 2 24390517 rs2288072 G A 580.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.228;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.371;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=0.037;SB=-3.470e+02;SOR=0.799;VQSLOD=6.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,25:52:99:609,0,781 2 24395269 rs918802 T C 130.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.900;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=-0.973;SB=0.00;SOR=0.307;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:9,5:14:99:159,0,314 2 24395294 rs918803 T C 152.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.785;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.409;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.27;ReadPosRankSum=-0.821;SB=-6.100e+01;SOR=0.193;VQSLOD=8.75;culprit=QD GT:AD:DP:GQ:PL 0/1:14,7:21:99:181,0,441 2 24395506 rs889830 T C 175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.454;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.935;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=0.847;SB=-9.732e-01;SOR=1.751;VQSLOD=5.36;culprit=QD GT:AD:DP:GQ:PL 0/1:12,7:19:99:204,0,342 2 24398281 rs2042467 T G 517.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.798;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.373;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.125;SB=-1.300e+02;SOR=1.015;VQSLOD=7.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,21:45:99:546,0,679 2 24398446 rs2042468 A T 908.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.284;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.801;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=0.063;SB=-4.180e+02;SOR=0.810;VQSLOD=7.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,40:92:99:937,0,1349 2 24402127 rs67429271 C CAA 233.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.538;DB;DP=23;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=0.245;SB=-2.657e-01;SOR=1.981;VQSLOD=5.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,6:23:99:271,0,868 2 24432211 rs2303293 C T 604.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.984;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.659;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=0.127;SB=-8.900e+01;SOR=1.255;VQSLOD=7.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,21:39:99:633,0,408 2 24432620 rs2303294 A G 168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.63;ReadPosRankSum=-1.151;SB=-9.732e-01;SOR=0.976;VQSLOD=8.96;culprit=QD GT:AD:DP:GQ:PL 0/1:22,8:30:99:197,0,702 2 24432667 rs2303295 C G 738.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.156;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.935;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.12;ReadPosRankSum=-0.491;SB=-2.830e+02;SOR=0.869;VQSLOD=6.91;culprit=QD GT:AD:DP:GQ:PL 0/1:48,33:81:99:767,0,1195 2 24433799 rs111712240 C T 1189.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.746;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=3.834;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=-0.145;SB=-6.250e+02;SOR=0.523;VQSLOD=8.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,54:97:99:1218,0,998 2 24439048 rs3731625 A G 1055.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.796;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=0.961;SB=-5.030e+02;SOR=0.608;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:31,37:68:99:1084,0,759 2 24440997 rs2551183 A T 677.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-1.125e+02;SOR=3.258;VQSLOD=6.93;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,22:22:54:706,54,0 2 24475205 rs4450560 T C 1229.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.36;SB=-2.401e+02;SOR=3.145;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:93:1258,93,0 2 24484150 rs4665680 T C 1186.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.91;SB=-2.301e+02;SOR=2.964;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:87:1215,87,0 2 24498839 rs4411652 T G 621.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.27;SB=0.00;SOR=5.670;VQSLOD=8.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:650,48,0 2 24521493 rs7559133 C T 628.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;SB=-1.423e+02;SOR=2.531;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:48:657,48,0 2 24521766 rs6707600 C T 716.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.13;SB=0.00;SOR=6.184;VQSLOD=9.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:745,60,0 2 24524958 rs7603997 C T 943.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=-0.040;SB=-3.070e+02;SOR=0.752;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 0/1:48,37:86:99:972,0,1223 2 24550867 . CAA CA,C 791.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.300;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.51;MQ0=0;MQRankSum=0.417;POSITIVE_TRAIN_SITE;QD=20.30;RPA=14,13,12;RU=A;ReadPosRankSum=0.191;SB=-2.570e+02;SOR=0.542;STR;VQSLOD=3.87;culprit=MQRankSum GT:AD:DP:GQ:PL 1/2:2,27,10:42:99:829,169,110,573,0,658 2 24896389 rs4665712 T G 1609.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.152;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-0.105;SB=-6.060e+02;SOR=0.693;VQSLOD=8.89;culprit=FS GT:AD:DP:GQ:PL 0/1:60,60:120:99:1638,0,1485 2 24905927 rs11125744 G C 2612.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-1.586e+03;SOR=0.765;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2641,190,0 2 24933689 rs7593430 A C 1070.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=0.00;SOR=6.666;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:81:1099,81,0 2 24952712 rs375818965 CT C 139.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;DB;DP=29;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.59;RPA=13,12;RU=T;ReadPosRankSum=-0.971;SB=-3.300e+01;SOR=1.302;STR;VQSLOD=3.95;culprit=QD GT:AD:DP:GQ:PL 0/1:15,10:29:99:177,0,325 2 24952740 rs67177939 C CT 968.73 PASS AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.35;SB=-2.431e+02;SOR=2.200;VQSLOD=5.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:1006,63,0 2 24962252 rs3820933 G A 482.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.898;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=4.746;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=0.324;SB=-2.701e+01;SOR=1.931;VQSLOD=5.84;culprit=FS GT:AD:DP:GQ:PL 0/1:16,17:33:99:511,0,446 2 24974945 rs11125763 T G 1649.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.50;SB=-1.177e+03;SOR=0.760;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1678,117,0 2 25013523 rs12471620 G C 380.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.720;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-0.713;SB=0.00;SOR=0.941;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:11,14:25:99:409,0,356 2 25037042 rs1003064 G A 100.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.16;ReadPosRankSum=-1.063;SB=0.00;SOR=0.551;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:129,0,211 2 25038268 rs2082881 G A 401.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=0.00;SOR=5.136;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:430,36,0 2 25039804 rs2099505 G A 1271.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-2.171e+02;SOR=3.258;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1300,99,0 2 25040346 rs11680229 G A 196.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8489;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=0.736;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=-0.213;SB=0.00;SOR=0.836;VQSLOD=2.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,7:13:99:225,0,123 2 25040423 rs10178420 G A 1162.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.8616;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-2.341e+02;SOR=2.833;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:93:1191,93,0 2 25046090 rs1127568 T C 376.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.449;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=6.532;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=0.138;SB=-1.115e+02;SOR=0.039;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:14,14:28:99:405,0,484 2 25046355 rs4665273 T C 562.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=18.5626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-0.520;SB=-1.040e+02;SOR=0.752;VQSLOD=10.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,20:39:99:591,0,533 2 25046361 . A AT 238.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;DP=33;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.37;RPA=17,18;RU=T;ReadPosRankSum=1.158;SB=-4.609e+00;SOR=2.494;STR;VQSLOD=5.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,15:33:37:235,0,37 2 25047408 rs7604576 A G 996.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.034;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=2.977;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=0.561;SB=-5.230e+02;SOR=0.392;VQSLOD=9.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,41:94:99:1025,0,1380 2 25048847 rs2289090 A G 881.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.383;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.307;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=1.557;SB=-1.670e+02;SOR=1.152;VQSLOD=7.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,33:61:99:910,0,771 2 25049159 rs934611 A G 416.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.47;SB=0.00;SOR=4.977;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:445,33,0 2 25050977 rs7566416 T C 2227.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.732;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=-2.329;SB=-7.240e+02;SOR=0.648;VQSLOD=7.95;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:49,72:121:99:2256,0,1113 2 25057263 rs2278485 G A 128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=0.786;SB=-3.577e+01;SOR=0.293;VQSLOD=10.03;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:13:99:157,0,170 2 25057298 rs2278486 C G 439.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.935;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=0.596;SB=-7.101e+01;SOR=2.200;VQSLOD=5.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,18:22:99:468,0,103 2 25061810 rs377483153 AT A 130.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQ0=0;MQRankSum=0.000;QD=3.44;RPA=19,18;RU=T;ReadPosRankSum=1.332;SB=-4.511e+01;SOR=1.609;STR;VQSLOD=4.85;culprit=QD GT:AD:DP:GQ:PL 0/1:24,14:49:99:168,0,395 2 25062634 rs11125810 A G 701.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.29;SB=0.00;SOR=5.994;VQSLOD=7.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:730,57,0 2 25064079 rs2241757 G A 88.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.917;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.34;ReadPosRankSum=0.566;SB=-1.765e+00;SOR=0.693;VQSLOD=9.15;culprit=QD GT:AD:DP:GQ:PL 0/1:10,4:14:99:117,0,325 2 25064193 rs2241759 G A 471.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.390;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.307;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.496;SB=-1.640e+02;SOR=0.990;VQSLOD=7.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,17:39:99:500,0,605 2 25100738 rs10865315 C A 1321.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-6.150e+02;SOR=1.414;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1350,99,0 2 25100902 rs2033656 C G 1360.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;SB=-6.920e+02;SOR=1.329;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1389,99,0 2 25141538 rs11676272 A G 5119.77 PASS AC=2;AF=1.00;AN=2;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-3.174e+03;SOR=0.782;VQSLOD=6.41;culprit=DP GT:AD:DP:GQ:PL 1/1:0,163:163:99:5148,373,0 2 25181488 rs12986502 T C 1304.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6949;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.34;SB=-5.190e+02;SOR=1.775;VQSLOD=7.26;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,43:44:99:1333,99,0 2 25314186 rs2918630 T C 1545.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.3600;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=-9.350e+02;SOR=0.773;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1574,114,0 2 25354091 rs77614210 G C 337.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.78;SB=-1.205e+02;SOR=1.609;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:366,27,0 2 25359254 rs10202934 C T 2103.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.21;SB=-8.097e+01;SOR=5.856;VQSLOD=2.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:2132,163,0 2 25359545 rs3731632 C G 1694.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=-1.453e+02;SOR=4.362;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1723,129,0 2 25360092 rs79811742 G A 531.28 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.574;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.25;ReadPosRankSum=-1.332;SB=0.00;SOR=4.294;VQSLOD=3.84;culprit=FS GT:AD:DP:GQ:PL 1/1:1,16:17:9:559,9,0 2 25368005 rs10188516 G A 1381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;SB=-4.076e+01;SOR=5.784;VQSLOD=5.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:99:1410,105,0 2 25368030 rs10180231 T C 1039.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.99;SB=0.00;SOR=6.666;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:78:1068,78,0 2 25376407 rs78347469 G A 478.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.87;SB=0.00;SOR=5.283;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:507,39,0 2 25376564 rs142275657 CGT C 6184.73 PASS AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.84;RPA=3,2;RU=GT;SB=-2.439e+03;SOR=1.095;STR;VQSLOD=5.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,133:137:99:6222,400,0 2 25376895 . C T 408.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.976;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.471;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-0.577;SB=-1.590e+02;SOR=0.368;VQSLOD=8.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,16:38:99:437,0,683 2 25377176 rs2164808 T C 3433.77 PASS AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.86;SB=-2.111e+03;SOR=0.710;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,115:115:99:3462,256,0 2 25377329 rs2118404 C T 1123.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-7.697e+01;SOR=4.615;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:87:1152,87,0 2 25384169 rs2071345 G A 2380.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-1.073e+03;SOR=1.371;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2409,178,0 2 25384472 rs28930368 G A 1949.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-1.062e+03;SOR=0.818;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:1978,153,0 2 25469451 rs201436991 C T 409.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.905;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.51;ReadPosRankSum=-0.224;SB=-7.101e+01;SOR=0.929;VQSLOD=8.59;culprit=FS GT:AD:DP:GQ:PL 0/1:7,14:21:99:438,0,193 2 25656880 rs1395949 C G 1455.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.2212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.86;SB=-3.270e+02;SOR=2.833;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1484,111,0 2 25656889 . G GT 272.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.80;RPA=11,12;RU=T;ReadPosRankSum=1.127;SB=-7.000e+01;SOR=0.622;STR;VQSLOD=7.95;culprit=QD GT:AD:DP:GQ:PL 0/1:16,15:37:99:310,0,318 2 26152793 rs3731640 G A 871.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.748;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=-0.718;SB=-1.320e+02;SOR=0.776;VQSLOD=10.03;culprit=FS GT:AD:DP:GQ:PL 0/1:23,30:53:99:900,0,622 2 26161226 rs11388254 C CA 172.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DB;DP=31;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.17;RPA=15,16;RU=A;ReadPosRankSum=0.697;SB=-5.800e+01;SOR=1.262;STR;VQSLOD=4.26;culprit=QD GT:AD:DP:GQ:PL 0/1:16,12:31:99:210,0,264 2 26203407 rs80296895 G A 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.010;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.486;HaplotypeScore=2.6132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=-0.147;SB=-1.160e+02;SOR=1.571;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 0/1:17,13:30:99:309,0,471 2 26203678 rs1465878 T C 5060.77 PASS AC=2;AF=1.00;AN=2;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8183;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-2.105e+03;SOR=1.470;VQSLOD=5.69;culprit=DP GT:AD:DP:GQ:PL 1/1:0,165:165:99:5089,376,0 2 26217681 rs112906406 C T 245.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.91;ReadPosRankSum=-0.150;SB=-1.390e+02;SOR=0.307;VQSLOD=9.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,9:13:94:274,0,94 2 26251361 rs4665809 A G 984.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.35;SB=-6.570e+02;SOR=0.927;VQSLOD=4.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:72:1013,72,0 2 26321526 rs11678157 T C 838.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.95;SB=-1.055e+02;SOR=3.442;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:63:867,63,0 2 26350136 rs2289022 G T 1033.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-4.330e+02;SOR=1.483;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:78:1062,78,0 2 26357748 rs2243834 G T 889.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.68;SB=-3.520e+02;SOR=1.688;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:66:918,66,0 2 26399178 . T TTCCCCTCA 1036.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.96;RPA=1,2;RU=TCCCCTCA;ReadPosRankSum=1.034;SB=-2.960e+02;SOR=0.593;STR;VQSLOD=8.20;culprit=FS GT:AD:DP:GQ:PL 0/1:19,11:31:99:1074,0,1853 2 26399214 rs4665830 G A 728.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=-0.222;SB=-3.040e+02;SOR=0.693;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:30,30:60:99:757,0,791 2 26405985 rs10779956 A G 281.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.552;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.81;ReadPosRankSum=-1.132;SB=-4.700e+01;SOR=1.426;VQSLOD=6.83;culprit=QD GT:AD:DP:GQ:PL 0/1:21,11:32:99:310,0,584 2 26415088 rs34898931 TA T 228.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.992;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.97;RPA=15,14;RU=A;ReadPosRankSum=1.200;SB=-4.001e+01;SOR=0.859;STR;VQSLOD=6.76;culprit=QD GT:AD:DP:GQ:PL 0/1:30,16:49:99:266,0,113 2 26415093 rs74825771 A C 903.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.432;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.9233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=-1.008;SB=-2.440e+02;SOR=0.634;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:21,31:52:99:932,0,494 2 26415429 rs5001914 A G 221.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.06;ReadPosRankSum=0.996;SB=-3.400e+01;SOR=1.270;VQSLOD=9.00;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:250,0,133 2 26416301 rs7582341 A G 998.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.693;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.345;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=1.915;SB=-4.260e+02;SOR=0.328;VQSLOD=9.13;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:28,36:64:99:1027,0,680 2 26417533 rs1865324 C A 282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.995;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-0.368;SB=0.00;SOR=0.793;VQSLOD=10.43;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:311,0,295 2 26420708 rs13387855 T G 589.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.789;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=1.034;SB=-2.700e+02;SOR=0.665;VQSLOD=9.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,22:58:99:618,0,991 2 26420809 rs2289019 G C 151.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.23;ReadPosRankSum=0.486;SB=-1.765e+00;SOR=0.836;VQSLOD=9.18;culprit=QD GT:AD:DP:GQ:PL 0/1:14,7:21:99:180,0,450 2 26455002 rs35746418 C G 262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.671;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.706;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=-0.926;SB=-1.480e+02;SOR=0.148;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:9,12:21:99:291,0,284 2 26455127 rs11552518 G A 738.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.913;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.018;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-0.303;SB=-3.990e+02;SOR=0.465;VQSLOD=9.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,31:62:99:767,0,946 2 26457267 rs3892649 T G 609.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.555;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=6.605;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.94;ReadPosRankSum=0.602;SB=-5.300e+01;SOR=2.160;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 0/1:17,19:36:99:638,0,451 2 26467347 rs62128457 C A 110.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.197;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=5.842;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.52;ReadPosRankSum=-1.424;SB=-2.657e-01;SOR=2.494;VQSLOD=5.17;culprit=QD GT:AD:DP:GQ:PL 0/1:12,5:17:99:139,0,304 2 26500101 . CTT C 347.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.65;MQ0=0;MQRankSum=0.000;QD=9.15;RPA=22,20;RU=T;ReadPosRankSum=-0.248;SB=-1.160e+02;SOR=0.425;STR;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 0/1:20,18:50:99:385,0,315 2 26501953 rs7604564 C A 522.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.746;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=0.291;SB=-6.800e+01;SOR=0.512;VQSLOD=10.27;culprit=FS GT:AD:DP:GQ:PL 0/1:23,19:42:99:551,0,779 2 26502875 rs1056389 T C 140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-0.705;SB=0.00;SOR=0.446;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:169,0,242 2 26505858 rs17528590 A G 1241.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.818;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.812;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=-0.454;SB=-6.790e+02;SOR=0.818;VQSLOD=7.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,46:85:99:1270,0,920 2 26507724 rs17528653 T C 363.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.613;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=11.925;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=1.906;SB=-6.973e+00;SOR=3.137;VQSLOD=4.35;culprit=FS GT:AD:DP:GQ:PL 0/1:29,13:42:99:392,0,735 2 26512733 rs1056632 T G 868.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.877;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=-0.918;SB=-5.160e+02;SOR=0.806;VQSLOD=7.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,36:72:99:897,0,943 2 26512957 rs1056471 G C 308.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.370;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=-0.101;SB=-8.197e+01;SOR=0.204;VQSLOD=9.47;culprit=SOR GT:AD:DP:GQ:PL 0/1:6,11:17:99:337,0,192 2 26536299 rs11886746 C G 2624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.22;SB=-1.556e+03;SOR=1.006;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:94:99:2653,199,0 2 26537499 rs10187359 A C 1357.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.163;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.788;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=1.513;SB=-5.540e+02;SOR=0.790;VQSLOD=7.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,52:98:99:1386,0,1170 2 26606154 rs1109465 T C 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.599;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=-0.244;SB=-7.100e+01;SOR=0.368;VQSLOD=10.21;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:202,0,283 2 26607815 rs4665853 T C 581.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.079;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=5.885;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=-1.414;SB=-2.260e+02;SOR=0.169;VQSLOD=9.11;culprit=FS GT:AD:DP:GQ:PL 0/1:18,22:40:99:610,0,510 2 26607992 rs934280 T C 1641.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.19;SB=-4.710e+02;SOR=2.348;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1670,120,0 2 26653649 rs367775128 C T 1896.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.646;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=3.346;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.05;ReadPosRankSum=-0.905;SB=-6.220e+02;SOR=1.070;VQSLOD=5.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,69:135:99:1925,0,1842 2 26667615 rs939820 T C 4277.77 PASS AC=2;AF=1.00;AN=2;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.78;SB=-2.474e+03;SOR=0.920;VQSLOD=5.11;culprit=DP GT:AD:DP:GQ:PL 1/1:0,154:155:99:4306,313,0 2 26676322 rs1402962 A G 1051.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;SB=-5.850e+02;SOR=1.148;VQSLOD=5.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:78:1080,78,0 2 26676395 rs12623642 G T 499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.40;SB=-1.633e+02;SOR=2.179;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:39:528,39,0 2 26678169 rs1879759 G A 285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.731;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.350;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=0.327;SB=-2.302e+01;SOR=1.508;VQSLOD=6.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,10:19:99:314,0,240 2 26682646 rs4416176 T C 648.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.76;SB=0.00;SOR=5.892;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:677,51,0 2 26684706 rs61747275 G A 2540.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;DB;DP=209;Dels=0.00;ExcessHet=3.0103;FS=2.387;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=0.388;SB=-1.643e+03;SOR=0.523;VQSLOD=6.41;culprit=DP GT:AD:DP:GQ:PL 0/1:101,108:209:99:2569,0,2571 2 26693967 rs2272072 C T 1056.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.19;SB=-4.880e+02;SOR=1.308;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:78:1085,78,0 2 26698682 rs6712188 G T 1696.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.771;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.01;ReadPosRankSum=0.360;SB=-3.300e+02;SOR=1.573;VQSLOD=7.96;culprit=FS GT:AD:DP:GQ:PL 1/1:1,52:53:99:1725,138,0 2 26699126 rs4335905 C G 2641.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.08;SB=-1.291e+03;SOR=1.375;VQSLOD=6.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2670,190,0 2 26699855 rs2272069 G C 2199.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SB=-7.000e+02;SOR=1.963;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2228,166,0 2 26700700 rs4665855 G A 2927.77 PASS AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-1.637e+03;SOR=0.901;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:93:99:2956,217,0 2 26700819 rs55806442 TGG T 2820.73 PASS AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.52;RPA=5,3;RU=G;SB=-1.369e+03;SOR=0.800;STR;VQSLOD=4.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:63:99:2858,172,0 2 26700908 rs6749978 C G 1081.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.82;SB=-3.250e+02;SOR=2.303;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:81:1110,81,0 2 26702057 rs10714255 GT G 895.73 PASS AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.69;RPA=2,1;RU=T;SB=-1.803e+02;SOR=2.737;STR;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:933,66,0 2 26717641 rs939814 A G 1283.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.70;SB=-3.410e+02;SOR=2.242;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:96:1312,96,0 2 26724442 rs7589019 A G 1350.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-4.440e+02;SOR=2.147;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1379,99,0 2 26724725 rs6547079 T G 1602.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.24;SB=-6.370e+02;SOR=1.654;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1631,120,0 2 26733500 rs939817 C T 917.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-1.901e+02;SOR=2.753;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:72:946,72,0 2 26733677 rs7582117 G A 2015.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.39;SB=-1.146e+03;SOR=1.117;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2044,147,0 2 26739526 rs55682147 A G 1006.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.56;SB=-4.870e+02;SOR=1.143;VQSLOD=4.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:75:1035,75,0 2 26741961 rs13031859 G A 2234.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.926;DB;DP=195;Dels=0.00;ExcessHet=3.0103;FS=3.487;HaplotypeScore=6.8786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-0.756;SB=-1.053e+03;SOR=0.440;VQSLOD=5.45;culprit=DP GT:AD:DP:GQ:PL 0/1:107,88:195:99:2263,0,2846 2 26750557 rs10865425 T C 1468.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.97;SB=-3.670e+02;SOR=2.531;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1497,111,0 2 26750645 rs1879760 G A 3097.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=-1.301e+03;SOR=1.609;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:3126,229,0 2 26750769 rs1879761 G A 1544.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.633;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=2.137;HaplotypeScore=2.6639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=-0.885;SB=-9.900e+02;SOR=0.528;VQSLOD=8.12;culprit=DP GT:AD:DP:GQ:PL 0/1:72,67:139:99:1573,0,1842 2 26781247 rs4665880 G C 229.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=7.900;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.76;ReadPosRankSum=-0.039;SB=-6.829e-02;SOR=2.584;VQSLOD=5.34;culprit=QD GT:AD:DP:GQ:PL 0/1:25,9:34:99:258,0,777 2 26798893 rs13002673 A T 1498.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.522;DB;DP=162;Dels=0.00;ExcessHet=3.0103;FS=2.827;HaplotypeScore=2.8935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=1.042;SB=-9.120e+02;SOR=0.773;VQSLOD=6.35;culprit=DP GT:AD:DP:GQ:PL 0/1:97,65:162:99:1527,0,2432 2 26799031 rs2272464 G A 658.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.938;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.706;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=1.272;SB=-3.550e+02;SOR=0.308;VQSLOD=9.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,29:67:99:687,0,1181 2 26799091 rs2272465 C A 490.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.675;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=9.165;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-0.122;SB=-5.300e+01;SOR=2.833;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 0/1:18,19:37:99:519,0,550 2 26800422 rs1053807 G A 1863.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.634;DB;DP=167;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=1.018;SB=-8.770e+02;SOR=0.650;VQSLOD=7.53;culprit=DP GT:AD:DP:GQ:PL 0/1:95,72:167:99:1892,0,2397 2 26802392 rs2272467 A T 1499.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.853;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.822;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=0.556;SB=-4.060e+02;SOR=0.889;VQSLOD=7.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,56:112:99:1528,0,1460 2 26804122 rs744539 T G 1990.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.18;SB=-5.000e+02;SOR=2.546;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:2019,150,0 2 26804143 rs744540 T C 2385.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.81;SB=-1.015e+03;SOR=1.578;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2414,175,0 2 26804218 rs935171 G A 2884.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.01;SB=-1.609e+03;SOR=0.973;VQSLOD=4.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:104:99:2913,214,0 2 26804247 rs935172 T C 2876.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-1.422e+03;SOR=1.378;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:2905,220,0 2 26818006 rs1148962 T C 3767.77 PASS AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.63;SB=-1.692e+03;SOR=1.590;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,123:123:99:3796,277,0 2 26818021 rs1148963 C T 4062.77 PASS AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-2.091e+03;SOR=1.170;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,135:135:99:4091,298,0 2 26951449 rs1663002 G A 1137.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.44;SB=-4.280e+02;SOR=1.981;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:87:1166,87,0 2 27150891 rs3769134 G A 472.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.403;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.273;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-1.018;SB=-2.630e+02;SOR=1.022;VQSLOD=7.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,19:37:99:501,0,501 2 27157788 rs920435 T C 379.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.579;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=-0.235;SB=-4.276e+01;SOR=0.340;VQSLOD=10.17;culprit=FS GT:AD:DP:GQ:PL 0/1:10,14:24:99:408,0,328 2 27163044 rs3739085 T C 1610.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.964;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=4.497;HaplotypeScore=2.8379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=1.249;SB=-7.480e+02;SOR=1.314;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 0/1:62,64:126:99:1639,0,1585 2 27164806 rs3820823 G A 1198.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.426;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=-1.588;SB=-5.970e+02;SOR=0.685;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 0/1:39,46:85:99:1227,0,1033 2 27167784 rs3739088 C T 235.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.159;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.779;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.86;ReadPosRankSum=-0.974;SB=-4.600e+01;SOR=1.650;VQSLOD=5.90;culprit=QD GT:AD:DP:GQ:PL 0/1:21,9:30:99:264,0,592 2 27169540 rs3769138 T G 204.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.933;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-0.293;SB=-1.765e+00;SOR=1.270;VQSLOD=10.02;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:233,0,296 2 27169637 rs3835821 TC T 1509.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=0.305;SB=-4.540e+02;SOR=0.580;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 0/1:39,39:78:99:1547,0,1681 2 27169842 rs11126784 C A 1411.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.544;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=-0.813;SB=-6.030e+02;SOR=0.587;VQSLOD=9.76;culprit=FS GT:AD:DP:GQ:PL 0/1:47,52:99:99:1440,0,1347 2 27246285 rs10865456 C T 3810.77 PASS AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9720;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-2.406e+03;SOR=0.724;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,128:128:99:3839,283,0 2 27249245 rs3754733 A G 960.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.968;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=6.173;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=-0.651;SB=-4.640e+02;SOR=0.208;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:21,39:60:99:989,0,574 2 27259794 rs13021112 G A 1113.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.175;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.757;HaplotypeScore=2.9963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=0.924;SB=-6.540e+02;SOR=0.567;VQSLOD=9.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,43:101:99:1142,0,1670 2 27260469 rs1124649 G A 1631.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.933;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.665;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=-0.097;SB=-9.490e+02;SOR=0.761;VQSLOD=8.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,67:123:99:1660,0,1535 2 27261329 rs11690454 A G 1984.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=-3.110e+02;SOR=3.342;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:2013,147,0 2 27262763 rs146244277 GGGA G 7167.73 PASS AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;RPA=2,1;RU=GGA;SB=-1.943e+03;SOR=2.138;STR;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,125:138:99:7205,376,0 2 27263122 rs1866654 T C 2639.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.697;DB;DP=192;Dels=0.00;ExcessHet=3.0103;FS=1.142;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=1.406;SB=-1.162e+03;SOR=0.800;VQSLOD=7.64;culprit=DP GT:AD:DP:GQ:PL 0/1:93,99:192:99:2668,0,2412 2 27276202 rs3806520 G A 383.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.740;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-1.321;SB=-2.000e+02;SOR=0.646;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:18,15:33:99:412,0,449 2 27279416 rs2384570 A G 1217.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-3.700e+02;SOR=2.247;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1246,99,0 2 27280092 rs6711384 T A 824.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.351;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=3.023;HaplotypeScore=1.8316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=-1.236;SB=-3.300e+02;SOR=0.297;VQSLOD=9.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,33:52:99:853,0,585 2 27280127 rs6721395 G A 1125.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.353;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.915;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=0.063;SB=-5.280e+02;SOR=0.576;VQSLOD=9.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,45:76:99:1154,0,802 2 27280460 rs7560144 A G 170.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.689;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.813;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=1.733;SB=-7.301e+01;SOR=0.105;VQSLOD=8.65;culprit=QD GT:AD:DP:GQ:PL 0/1:12,7:19:99:199,0,362 2 27290525 rs11681145 A G 946.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=0.212;SB=-6.290e+02;SOR=0.693;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:40,40:80:99:975,0,1017 2 27291661 rs7575465 G A 666.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.268;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.627;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-0.175;SB=-5.900e+01;SOR=1.195;VQSLOD=7.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,23:56:99:695,0,1006 2 27292651 rs10865461 T C 450.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.416;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=7.356;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=-1.109;SB=-4.200e+01;SOR=2.080;VQSLOD=6.05;culprit=FS GT:AD:DP:GQ:PL 0/1:27,17:44:99:479,0,750 2 27293150 rs1053609 G T 615.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.611;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.156;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=0.709;SB=-3.690e+02;SOR=1.022;VQSLOD=7.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,26:46:99:644,0,534 2 27302165 rs2289360 T C 1547.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.697;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=0.689;SB=-2.720e+02;SOR=0.558;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:41,55:96:99:1576,0,1162 2 27303755 rs2736976 A G 1515.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-4.330e+02;SOR=2.208;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1544,114,0 2 27307769 rs2304682 G C 1751.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.937;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=1.278;HaplotypeScore=7.3399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=-0.584;SB=-1.046e+03;SOR=0.857;VQSLOD=7.20;culprit=DP GT:AD:DP:GQ:PL 0/1:82,71:153:99:1780,0,2083 2 27310393 rs2119026 G A 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=-1.213;SB=0.00;SOR=1.609;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:89:241,0,89 2 27315064 rs6754371 G A 201.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.741;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-0.437;SB=0.00;SOR=0.693;VQSLOD=9.92;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:230,0,215 2 27319826 rs9677784 A G 1433.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=-6.370e+02;SOR=1.609;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1462,105,0 2 27321887 rs4665944 A G 512.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=0.00;SOR=5.549;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:541,45,0 2 27323385 rs1131375 C T 903.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.954;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.788;HaplotypeScore=5.2104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=-0.151;SB=-5.620e+02;SOR=0.582;VQSLOD=9.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:57,37:94:99:932,0,1547 2 27323468 rs4665371 A C 2188.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-8.580e+02;SOR=1.819;VQSLOD=5.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2217,160,0 2 27324036 rs1057394 G A 58.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.855;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.34;ReadPosRankSum=1.899;SB=0.00;SOR=0.330;VQSLOD=8.63;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:87:87,0,246 2 27324724 rs2384571 G C 2014.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.600;SB=-1.100e+03;SOR=0.692;VQSLOD=8.01;culprit=DP GT:AD:DP:GQ:PL 0/1:76,78:154:99:2043,0,1994 2 27324751 . G T 2286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.728;DP=170;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.45;ReadPosRankSum=-1.956;SB=-1.336e+03;SOR=0.642;VQSLOD=5.72;culprit=DP GT:AD:DP:GQ:PL 0/1:79,91:170:99:2315,0,2263 2 27351279 rs1866561 G A 606.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.093;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.400;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=0.815;SB=-1.700e+02;SOR=1.044;VQSLOD=7.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,23:41:99:635,0,481 2 27351306 . C G 752.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.145;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.20;ReadPosRankSum=1.709;SB=-2.490e+02;SOR=0.569;VQSLOD=7.76;culprit=FS GT:AD:DP:GQ:PL 0/1:26,27:53:99:781,0,740 2 27351948 rs6715286 T G 2703.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.19;SB=-1.443e+03;SOR=1.013;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2732,196,0 2 27353507 rs2304678 G C 1727.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.189;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=2.595;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.30;ReadPosRankSum=1.889;SB=-7.790e+02;SOR=0.978;VQSLOD=7.10;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:45,61:106:99:1756,0,1065 2 27354173 rs11126874 C A 986.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.03;SB=-1.613e+02;SOR=3.334;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:78:1015,78,0 2 27354971 rs11695930 C T 1681.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.323;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=-0.669;SB=-1.012e+03;SOR=0.701;VQSLOD=8.53;culprit=FS GT:AD:DP:GQ:PL 0/1:71,67:138:99:1710,0,2039 2 27355454 rs4665948 A C 1332.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6203;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.17;SB=-1.991e+02;SOR=3.556;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1361,102,0 2 27355991 rs2289358 G T 1699.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.506;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=2.065;HaplotypeScore=3.6809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=0.504;SB=-7.310e+02;SOR=0.906;VQSLOD=7.61;culprit=DP GT:AD:DP:GQ:PL 0/1:80,72:152:99:1728,0,2197 2 27356278 rs2289359 T C 1108.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.662;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=2.710;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=2.643;SB=-5.120e+02;SOR=1.055;VQSLOD=6.93;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:51,44:95:99:1137,0,1377 2 27359887 rs11121 C T 855.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.971;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=0.359;SB=-7.000e+01;SOR=0.656;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:18,27:45:99:884,0,576 2 27361246 rs2304680 C T 205.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.194;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.91;ReadPosRankSum=-0.343;SB=-9.100e+01;SOR=0.963;VQSLOD=9.51;culprit=QD GT:AD:DP:GQ:PL 0/1:16,10:26:99:234,0,442 2 27424496 rs1006898 G A 3004.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6939;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;SB=-1.819e+03;SOR=0.818;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:3033,229,0 2 27424636 rs1395 G A 4429.77 PASS AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-2.062e+03;SOR=1.318;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,144:144:99:4458,331,0 2 27426514 rs1275521 G C 1274.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.69;SB=-2.740e+02;SOR=2.891;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:96:1303,96,0 2 27426878 rs1275522 C T 548.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;SB=-1.573e+02;SOR=2.303;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:42:577,42,0 2 27428147 rs1298361 A G 1359.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-2.401e+02;SOR=3.417;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1388,114,0 2 27428295 rs1275524 A G 5215.77 PASS AC=2;AF=1.00;AN=2;DB;DP=180;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.98;SB=-3.266e+03;SOR=0.911;VQSLOD=4.38;culprit=DP GT:AD:DP:GQ:PL 1/1:0,180:180:99:5244,388,0 2 27428815 rs1275526 C G 792.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.47;SB=-1.623e+02;SOR=2.833;VQSLOD=7.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:821,60,0 2 27428877 rs1275527 C G 1680.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.11;SB=-9.180e+02;SOR=1.234;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1709,120,0 2 27435250 rs1275533 A G 1692.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.19;SB=-7.500e+02;SOR=1.314;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1721,126,0 2 27435374 rs11608 G A 501.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=2.162;SB=-2.070e+02;SOR=0.836;VQSLOD=8.99;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:16,21:37:99:530,0,383 2 27438519 . A G 1127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.787;DP=88;Dels=0.00;ExcessHet=3.0103;FS=3.311;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.82;ReadPosRankSum=-0.848;SB=-4.050e+02;SOR=0.317;VQSLOD=8.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,43:88:99:1156,0,1329 2 27440013 rs11306505 CT C 359.73 PASS AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.67;RPA=6,5;RU=T;SB=-6.397e+01;SOR=2.833;STR;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:16:39:397,39,0 2 27440785 rs1275536 C T 4062.77 PASS AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-1.661e+03;SOR=1.663;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,133:133:99:4091,295,0 2 27448171 . CT C 48.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=1.492;POSITIVE_TRAIN_SITE;QD=2.32;RPA=20,19;RU=T;ReadPosRankSum=-0.509;SB=0.00;SOR=0.346;STR;VQSLOD=2.67;culprit=QD GT:AD:DP:GQ:PL 0/1:13,8:26:86:86,0,216 2 27460352 . G T 682.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.981;DP=63;Dels=0.00;ExcessHet=3.0103;FS=3.675;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.84;ReadPosRankSum=0.007;SB=-2.510e+02;SOR=1.262;VQSLOD=5.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,28:63:99:711,0,911 2 27466258 . CTT C 133.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;DP=71;ExcessHet=3.0103;FS=5.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.48;RPA=21,19;RU=T;ReadPosRankSum=0.966;SB=-3.700e+01;SOR=1.819;STR;VQSLOD=4.51;culprit=QD GT:AD:DP:GQ:PL 0/1:43,11:71:99:171,0,1048 2 27485598 . C A 375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.517;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.42;ReadPosRankSum=1.649;SB=-1.320e+02;SOR=0.260;VQSLOD=8.05;culprit=SOR GT:AD:DP:GQ:PL 0/1:12,16:28:99:404,0,374 2 27521548 . C T 1718.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.445;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.38;ReadPosRankSum=-0.700;SB=-1.087e+03;SOR=0.727;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 0/1:77,74:151:99:1747,0,1988 2 27522543 rs112702645 CCTAT C,CCTATCTAT 684.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;RPA=10,9,11;RU=CTAT;SB=-1.770e+02;SOR=2.147;STR;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/2:0,6,7:14:99:722,400,706,362,0,563 2 27535311 . T TG 1630.73 PASS AC=2;AF=1.00;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.31;RPA=2,3;RU=G;SB=-6.320e+02;SOR=1.292;STR;VQSLOD=6.04;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,40:40:99:1668,120,0 2 27558252 rs11684134 A G 331.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.799;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=5.696;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.51;ReadPosRankSum=-0.373;SB=-4.900e+01;SOR=2.041;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 0/1:26,13:39:99:360,0,668 2 27598097 rs4665972 T C 638.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=0.00;SOR=5.784;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:667,51,0 2 27606098 rs2384629 A G 1491.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.90;SB=-1.991e+02;SOR=3.816;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1520,114,0 2 27632075 rs181961549 G C 164.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.16;ReadPosRankSum=-0.420;SB=-7.700e+01;SOR=0.743;VQSLOD=8.44;culprit=QD GT:AD:DP:GQ:PL 0/1:15,8:23:99:193,0,394 2 27730940 rs1260326 T C 2862.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-1.461e+03;SOR=1.076;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:2891,214,0 2 27731212 rs3817588 T C 1389.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-1.643e+02;SOR=3.855;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1418,102,0 2 27789861 rs965813 T A 3547.77 PASS AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-2.177e+03;SOR=0.710;VQSLOD=5.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,115:115:99:3576,268,0 2 27801403 rs1919125 C G 2248.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.239;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.20;ReadPosRankSum=0.529;SB=-1.272e+03;SOR=0.892;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:2,75:77:99:2277,124,0 2 27801418 rs1919126 C A 2435.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.554;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.70;ReadPosRankSum=-0.662;SB=-1.377e+03;SOR=0.908;VQSLOD=7.91;culprit=FS GT:AD:DP:GQ:PL 1/1:2,80:82:99:2464,145,0 2 27802805 rs3811644 A G 4378.77 PASS AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-2.755e+03;SOR=0.722;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,140:140:99:4407,316,0 2 27804432 rs28381983 T C 3200.06 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.81;SB=-1.626e+03;SOR=0.855;VQSLOD=5.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:3229,241,0 2 27824168 rs56725354 G C 2147.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-1.054e+03;SOR=1.196;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2176,157,0 2 27830990 rs6547734 G T 1430.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-2.271e+02;SOR=3.467;VQSLOD=7.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1459,114,0 2 27838058 rs11127071 C A 1339.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-7.940e+02;SOR=0.737;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1368,105,0 2 27839107 rs6737921 T C 4537.77 PASS AC=2;AF=1.00;AN=2;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.85;SB=-3.068e+03;SOR=0.719;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,152:152:99:4566,325,0 2 27849928 rs199568016 GTC G 3591.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;DB;DP=151;ExcessHet=3.0103;FS=2.992;MLEAC=1;MLEAF=0.500;MQ=58.08;MQ0=0;MQRankSum=-2.068;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.12;RPA=2,1;RU=TC;ReadPosRankSum=-0.906;SB=-1.760e+03;SOR=0.567;STR;VQSLOD=0.030;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:65,78:151:99:3629,0,2954 2 27851120 rs12615690 T C 1234.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.53;SB=0.00;SOR=6.932;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:93:1263,93,0 2 27852117 rs66672615 A AGGTCTT 3024.73 PASS AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.00;SB=-1.184e+03;SOR=1.085;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:99:3062,102,0 2 27852118 rs58737572 A C 971.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.52;SB=-4.850e+02;SOR=0.922;VQSLOD=4.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:29:78:1000,78,0 2 27852150 . C CG 1263.73 PASS AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.55;RPA=5,6;RU=G;SB=-4.890e+02;SOR=1.308;STR;VQSLOD=4.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:37:99:1301,105,0 2 27852637 rs6547738 A G 1116.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-1.961e+02;SOR=2.910;VQSLOD=7.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:84:1145,84,0 2 27855239 rs4666005 A G 473.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.84;SB=0.00;SOR=5.421;VQSLOD=8.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:502,42,0 2 27855397 rs10173720 A T 3135.77 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.03;SB=-1.766e+03;SOR=1.077;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,108:108:99:3164,235,0 2 27857992 rs4666009 T A 2819.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;SB=-1.584e+03;SOR=0.883;VQSLOD=5.97;culprit=DP GT:AD:DP:GQ:PL 1/1:0,90:90:99:2848,217,0 2 27858167 . C CTTTTT,CTTTTTTT 2103.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.69;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.87;RPA=16,21,23;RU=T;SB=-6.600e+02;SOR=1.911;STR;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/2:0,16,16:62:99:2141,442,343,465,0,366 2 27861707 rs11692692 G A 844.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=0.888;SB=-2.970e+02;SOR=0.788;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:29,31:60:99:873,0,654 2 27886463 . G T 127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.78;ReadPosRankSum=-0.100;SB=0.00;SOR=0.693;VQSLOD=8.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,5:10:99:156,0,169 2 27887034 rs9678851 C A 1724.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.901;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=3.858;HaplotypeScore=7.7975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=-0.591;SB=-7.880e+02;SOR=1.035;VQSLOD=7.25;culprit=DP GT:AD:DP:GQ:PL 0/1:86,68:154:99:1753,0,2401 2 27900569 rs79021989 A G 674.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.462;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=3.143;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=1.985;SB=-2.880e+02;SOR=0.263;VQSLOD=9.34;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:19,28:47:99:703,0,539 2 27907771 . A G 399.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.245;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.174;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.81;ReadPosRankSum=0.218;SB=-1.765e+00;SOR=1.845;VQSLOD=4.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,14:27:99:428,0,395 2 27930837 rs4665385 C T 262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.555;HaplotypeScore=3.5306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.96;ReadPosRankSum=0.019;SB=-7.000e+01;SOR=1.802;VQSLOD=6.02;culprit=QD GT:AD:DP:GQ:PL 0/1:22,11:33:99:291,0,619 2 28069713 rs11901133 T G 256.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.174;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=1.841;SB=-3.500e+01;SOR=0.368;VQSLOD=9.76;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:285,0,272 2 28235955 rs10495761 T C 168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.319;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=-0.414;SB=0.00;SOR=0.569;VQSLOD=10.37;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:197,0,242 2 28236120 rs11127132 C T 1700.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.547;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=1.388;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=1.392;SB=-6.780e+02;SOR=0.834;VQSLOD=7.21;culprit=DP GT:AD:DP:GQ:PL 0/1:76,63:139:99:1729,0,1914 2 28464435 rs6737817 T C 749.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.12;SB=-7.397e+01;SOR=3.716;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:57:778,57,0 2 28521057 rs4665408 C T 132.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-1.016;SB=0.00;SOR=0.693;VQSLOD=10.28;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:161,0,167 2 28718897 rs4665423 A G 2652.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.15;SB=-1.671e+03;SOR=0.836;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2681,190,0 2 28748857 rs4666085 T C 4407.77 PASS AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.39;SB=-2.657e+03;SOR=0.895;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,150:150:99:4436,316,0 2 28748916 rs10181687 A C 1775.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.316;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.772;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.31;ReadPosRankSum=-0.136;SB=-8.060e+02;SOR=0.560;VQSLOD=9.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,71:116:99:1804,0,1181 2 28752498 rs6728486 T C 1762.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.90;SB=-8.960e+02;SOR=1.036;VQSLOD=5.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1791,129,0 2 28752555 rs4473343 T C 1624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.66;SB=-9.160e+02;SOR=0.981;VQSLOD=7.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1653,120,0 2 28752727 rs6710800 C G 581.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-1.643e+02;SOR=2.419;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:45:610,45,0 2 28752741 rs6725577 A G 509.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-1.115e+02;SOR=2.584;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:39:538,39,0 2 28761257 rs7589169 A G 496.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-1.105e+02;SOR=2.584;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:39:525,39,0 2 28761282 rs7589254 A G 299.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=-7.497e+01;SOR=2.303;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:328,24,0 2 28761981 rs6753929 G C 2070.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.188;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=3.761;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=1.017;SB=-1.042e+03;SOR=1.032;VQSLOD=6.80;culprit=DP GT:AD:DP:GQ:PL 0/1:81,76:157:99:2099,0,2140 2 28764452 rs13406540 C T 1123.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-4.176e+01;SOR=5.549;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:90:1152,90,0 2 28764458 rs11127163 C A 1268.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.99;SB=-4.176e+01;SOR=5.670;VQSLOD=3.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:99:1297,99,0 2 28766254 rs11127164 T C 330.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.231;SB=0.00;SOR=0.560;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:14,12:26:99:359,0,471 2 28771452 rs56019402 CTA C 1618.73 PASS AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.91;RPA=8,7;RU=TA;SB=-7.970e+02;SOR=0.743;STR;VQSLOD=4.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:47:99:1656,117,0 2 28771624 rs11680168 T G 2258.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7650;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.27;SB=-1.081e+03;SOR=1.244;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2287,166,0 2 28771897 rs11680304 T C 207.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.959;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=1.233;SB=0.00;SOR=0.593;VQSLOD=10.08;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:236,0,299 2 28785754 rs7560628 G C 901.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.39;SB=-8.297e+01;SOR=4.174;VQSLOD=5.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:930,69,0 2 28785768 rs12999555 A G 442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.233;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.765;SB=-6.900e+01;SOR=0.804;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:20,16:36:99:471,0,512 2 28788428 rs34237604 AG A 750.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.22;RPA=2,1;RU=G;ReadPosRankSum=1.198;SB=-2.110e+02;SOR=0.495;STR;VQSLOD=8.64;culprit=FS GT:AD:DP:GQ:PL 0/1:11,20:36:99:788,0,394 2 28795893 rs13005799 G A 133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.563;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.35;ReadPosRankSum=-0.573;SB=-1.765e+00;SOR=0.434;VQSLOD=9.13;culprit=QD GT:AD:DP:GQ:PL 0/1:19,6:25:99:162,0,577 2 28795899 rs13007288 C T 154.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.910;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.95;ReadPosRankSum=-1.157;SB=-1.765e+00;SOR=0.536;VQSLOD=8.91;culprit=QD GT:AD:DP:GQ:PL 0/1:19,7:26:99:183,0,669 2 28795962 rs13005854 G A 722.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.825;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=2.116;HaplotypeScore=3.6513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=-1.121;SB=-2.530e+02;SOR=1.087;VQSLOD=6.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,30:77:99:751,0,1151 2 28796291 rs1881251 G A 168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=0.275;SB=0.00;SOR=0.569;VQSLOD=10.27;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:197,0,235 2 28805140 rs75601428 C T 365.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.048;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=-0.348;SB=-6.400e+01;SOR=1.981;VQSLOD=5.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,13:24:99:394,0,326 2 28816425 rs10176136 T C 618.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;SB=0.00;SOR=5.670;VQSLOD=7.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:647,48,0 2 28816814 rs35712549 C CTTT 567.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.981;DB;DP=28;ExcessHet=3.0103;FS=6.107;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.54;RPA=14,17;RU=T;ReadPosRankSum=0.119;SB=-1.698e+02;SOR=1.825;STR;VQSLOD=5.05;culprit=FS GT:AD:DP:GQ:PL 1/1:3,15:28:31:605,31,0 2 28816948 rs4665429 C T 878.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;SB=-4.640e+02;SOR=1.071;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:66:907,66,0 2 28821662 rs7557359 C T 830.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.294;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=1.541;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=0.069;SB=-1.210e+02;SOR=0.402;VQSLOD=9.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,32:67:99:859,0,1132 2 28821739 rs7573845 T G 368.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=0.246;SB=0.00;SOR=0.776;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:11,12:23:99:397,0,362 2 28824303 rs1106882 C G 267.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=-0.926;SB=-3.876e+01;SOR=0.412;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:6,10:16:99:296,0,189 2 28855918 . A AG 7401.73 PASS AC=2;AF=1.00;AN=2;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.55;RPA=2,3;RU=G;SB=-3.185e+03;SOR=1.038;STR;VQSLOD=5.90;culprit=DP GT:AD:DP:GQ:PL 1/1:0,179:183:99:7439,538,0 2 28856047 rs3752901 T C 2486.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.54;SB=-6.480e+02;SOR=2.505;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2515,184,0 2 28866032 rs3088281 A C 84.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=0.000;SB=-6.800e+01;SOR=0.693;VQSLOD=9.51;culprit=QD GT:AD:DP:GQ:PL 0/1:5,5:10:99:113,0,108 2 28975107 rs2276547 G C 342.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.609;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.935;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=-0.973;SB=-8.097e+01;SOR=0.191;VQSLOD=9.38;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,12:19:99:371,0,233 2 29045323 rs4436918 C T 1030.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.86;SB=-6.280e+02;SOR=0.984;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:78:1059,78,0 2 29052256 rs12998251 T C 1503.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.00;SB=-1.573e+02;SOR=3.958;VQSLOD=6.86;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,47:47:99:1532,126,0 2 29087814 rs55785599 C A 1554.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-4.170e+02;SOR=2.400;VQSLOD=4.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1583,117,0 2 29092679 rs4233729 T C 2478.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.05;SB=-1.421e+03;SOR=0.832;VQSLOD=7.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2507,181,0 2 29092850 rs4666122 G T 4546.77 PASS AC=2;AF=1.00;AN=2;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2971;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.96;SB=-2.460e+03;SOR=1.164;VQSLOD=4.60;culprit=DP GT:AD:DP:GQ:PL 1/1:0,157:158:99:4575,343,0 2 29129418 rs11688605 A G 1375.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.75;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-4.320e+02;SOR=1.954;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1404,102,0 2 29135468 rs6715296 C G 3247.77 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.49;SB=-1.928e+03;SOR=0.965;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,114:114:99:3276,238,0 2 29136489 rs4666132 G T 841.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.03;SB=-4.060e+02;SOR=1.255;VQSLOD=5.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:66:870,66,0 2 29136623 rs4666133 T C 1166.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.78;SB=-7.680e+02;SOR=0.693;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:87:1195,87,0 2 29136653 rs4666134 T C 1166.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=-5.930e+02;SOR=1.121;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:87:1195,87,0 2 29136685 rs12472068 C T 1020.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-3.710e+02;SOR=1.473;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:78:1049,78,0 2 29140711 rs4389288 G A 2507.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.21;SB=-1.572e+03;SOR=0.717;VQSLOD=7.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2536,187,0 2 29145663 . G GTTT 1308.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;DP=64;ExcessHet=3.0103;FS=6.767;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=0.000;QD=22.56;RPA=17,20;RU=T;ReadPosRankSum=0.300;SB=-1.570e+02;SOR=4.174;STR;VQSLOD=3.03;culprit=FS GT:AD:DP:GQ:PL 0/1:18,40:64:72:993,0,72 2 29145725 rs9653591 G T 3356.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.968;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=30.6550;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.74;ReadPosRankSum=1.251;SB=-1.763e+03;SOR=0.259;VQSLOD=4.72;culprit=FS GT:AD:DP:GQ:PL 1/1:2,119:121:99:3385,261,0 2 29158613 . CAAA C 419.73 PASS AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;RPA=21,18;RU=A;SB=0.00;SOR=5.421;STR;VQSLOD=7.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:21:40:457,40,0 2 29161010 rs4233731 G A 2056.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-1.142e+03;SOR=1.022;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2085,150,0 2 29164022 rs4666141 G T 369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.35;SB=0.00;SOR=4.804;VQSLOD=7.06;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,10:10:30:398,30,0 2 29169612 rs3087649 T C 676.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-3.150e+02;SOR=1.085;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:51:705,51,0 2 29222070 rs13009279 G A 988.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.029;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-2.199;SB=-4.640e+02;SOR=0.706;VQSLOD=8.70;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:39,37:76:99:1017,0,946 2 29222388 rs57018089 G C 479.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.835;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.2383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-1.653;SB=-4.176e+01;SOR=0.869;VQSLOD=9.21;culprit=FS GT:AD:DP:GQ:PL 0/1:20,18:38:99:508,0,562 2 29226222 rs4666160 G A 809.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.870;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-0.358;SB=-2.910e+02;SOR=0.508;VQSLOD=10.31;culprit=FS GT:AD:DP:GQ:PL 0/1:23,32:55:99:838,0,659 2 29226498 rs12613325 G A 818.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=-0.744;SB=-2.600e+02;SOR=0.789;VQSLOD=7.93;culprit=FS GT:AD:DP:GQ:PL 0/1:38,33:71:99:847,0,1033 2 29226512 rs12623297 A G 637.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.179;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.190;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=-0.581;SB=-1.120e+02;SOR=0.903;VQSLOD=7.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,25:58:99:666,0,930 2 29226559 rs12619829 C T 334.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.793;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=-0.761;SB=-3.500e+01;SOR=0.420;VQSLOD=10.18;culprit=FS GT:AD:DP:GQ:PL 0/1:18,13:31:99:363,0,573 2 29239942 rs11685375 T G 628.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.997;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=1.175;SB=-2.770e+02;SOR=0.643;VQSLOD=8.68;culprit=FS GT:AD:DP:GQ:PL 0/1:27,26:53:99:657,0,748 2 29240060 rs11127202 A G 875.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.451;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.929;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=1.888;SB=-4.230e+02;SOR=0.948;VQSLOD=7.45;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:37,35:72:99:904,0,998 2 29240582 rs66482868 T C 932.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.775;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.061;HaplotypeScore=3.4435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=-0.251;SB=-4.580e+02;SOR=0.534;VQSLOD=9.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,37:60:99:961,0,640 2 29240673 rs35166194 G A 1015.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.556;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=2.030;HaplotypeScore=1.9132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=0.259;SB=-5.560e+02;SOR=0.685;VQSLOD=6.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,37:69:99:1044,0,736 2 29240686 rs34261417 A C 1003.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=3.306;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=-1.542;SB=-5.690e+02;SOR=1.030;VQSLOD=6.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,41:68:99:1032,0,673 2 29240783 rs1109758 A G 366.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.049;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.583;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=-0.293;SB=-1.520e+02;SOR=0.252;VQSLOD=9.41;culprit=SOR GT:AD:DP:GQ:PL 0/1:17,13:30:99:395,0,432 2 29249403 rs11692581 T G 177.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.900;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.246;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-0.999;SB=-3.100e+01;SOR=1.402;VQSLOD=6.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,7:14:99:206,0,230 2 29249415 rs11685625 C T 237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.636;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=5.825;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=-1.252;SB=-2.801e+01;SOR=2.636;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:266,0,206 2 29249903 rs11884174 G C 506.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.052;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=-0.019;SB=-1.420e+02;SOR=0.620;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:12,20:32:99:535,0,343 2 29274720 rs895591 A G 1406.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.632;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=-0.707;SB=-7.750e+02;SOR=0.697;VQSLOD=8.90;culprit=FS GT:AD:DP:GQ:PL 0/1:49,54:103:99:1435,0,1306 2 29356669 rs3100232 A G 793.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.729;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=5.563;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-0.106;SB=-3.270e+02;SOR=0.250;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:36,34:70:99:822,0,1000 2 29356728 rs3768674 T C 433.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.755;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.150;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=0.738;SB=-8.297e+01;SOR=0.105;VQSLOD=9.30;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,15:28:99:462,0,410 2 29366830 rs3213947 A G 718.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.768;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=-0.540;SB=-3.790e+02;SOR=0.716;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:35,28:63:99:747,0,1011 2 29366875 rs34825217 C CACAG 1157.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.72;RPA=1,2;RU=ACAG;ReadPosRankSum=0.287;SB=-3.780e+02;SOR=0.741;STR;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:30,19:52:99:1195,0,1924 2 29380335 rs143268544 T C 181.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-0.212;SB=-3.477e+01;SOR=0.223;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:210,0,197 2 29383374 rs2305450 G A 179.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.752;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.577;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.73;ReadPosRankSum=0.161;SB=-1.170e+02;SOR=0.316;VQSLOD=8.67;culprit=QD GT:AD:DP:GQ:PL 0/1:27,11:38:99:208,0,748 2 29386646 rs10200936 G C 1787.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1515;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.82;ReadPosRankSum=-0.418;SB=-6.180e+02;SOR=2.011;VQSLOD=7.95;culprit=FS GT:AD:DP:GQ:PL 1/1:1,57:58:99:1816,132,0 2 29416572 rs1670283 T C 5516.77 PASS AC=2;AF=1.00;AN=2;DB;DP=177;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.6350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-3.242e+03;SOR=0.824;VQSLOD=6.44;culprit=DP GT:AD:DP:GQ:PL 1/1:0,177:177:99:5545,406,0 2 29419591 rs1670284 G T 2987.77 PASS AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.29;SB=-1.042e+03;SOR=1.802;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:102:99:3016,220,0 2 29429888 rs4666178 G A 723.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.660;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.143;HaplotypeScore=3.6374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-0.459;SB=-2.680e+02;SOR=0.477;VQSLOD=9.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,29:60:99:752,0,830 2 29436633 rs1625283 G T 175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=0.496;SB=-4.176e+01;SOR=0.175;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:204,0,248 2 29444095 rs1569156 C T 1429.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.42;SB=-8.640e+02;SOR=0.735;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1458,108,0 2 29446202 rs4622670 G A 2084.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.088;DB;DP=169;Dels=0.00;ExcessHet=3.0103;FS=5.113;HaplotypeScore=6.3618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-1.105;SB=-5.710e+02;SOR=1.134;VQSLOD=6.63;culprit=DP GT:AD:DP:GQ:PL 0/1:92,77:169:99:2113,0,2358 2 29449819 rs2293563 C T 1437.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.465;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.697;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=-0.876;SB=-7.420e+02;SOR=0.766;VQSLOD=8.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,56:113:99:1466,0,1345 2 29451986 rs62130588 C T 161.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.276;SB=-3.501e+01;SOR=0.551;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:190,0,209 2 29455267 rs2256740 A G 1376.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.099;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-0.519;SB=-8.560e+02;SOR=0.760;VQSLOD=8.24;culprit=FS GT:AD:DP:GQ:PL 0/1:68,61:129:99:1405,0,1828 2 29498210 rs4589708 A G 1245.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.763;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=1.486;SB=-4.980e+02;SOR=0.801;VQSLOD=8.05;culprit=FS GT:AD:DP:GQ:PL 0/1:56,43:99:99:1274,0,1567 2 29519622 rs2272409 C T 1079.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.876;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.465;HaplotypeScore=1.9053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=-2.394;SB=-2.980e+02;SOR=1.236;VQSLOD=6.25;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:26,41:67:99:1108,0,677 2 29520085 rs4666194 G A 199.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=-0.553;SB=0.00;SOR=0.836;VQSLOD=10.49;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:228,0,203 2 29525341 rs11127213 A G 155.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=0.763;SB=-9.732e-01;SOR=2.584;VQSLOD=5.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,6:13:99:184,0,175 2 29541104 rs2276549 C T 357.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.875;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.32;ReadPosRankSum=-0.572;SB=-1.070e+02;SOR=0.381;VQSLOD=9.91;culprit=QD GT:AD:DP:GQ:PL 0/1:23,20:43:99:386,0,696 2 29543663 rs2293564 T C 942.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.963;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.832;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=-1.572;SB=-5.170e+02;SOR=0.554;VQSLOD=8.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,40:90:99:971,0,1304 2 29917940 rs2256376 C G 674.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.587;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.040;SB=-2.020e+02;SOR=1.222;VQSLOD=7.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,24:49:99:703,0,603 2 29940529 rs2246745 A T 2536.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-1.381e+03;SOR=1.022;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2565,190,0 2 29940820 rs2270353 C T 447.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-7.897e+01;SOR=2.985;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:476,36,0 2 30143499 rs4358080 G C 1116.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-1.235e+02;SOR=3.767;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:84:1145,84,0 2 30381505 rs1137288 T C 1189.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.351;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=1.981;HaplotypeScore=2.5885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.774;SB=-3.190e+02;SOR=1.024;VQSLOD=7.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,41:83:99:1218,0,1066 2 30682360 rs829574 G A 784.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.394;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.84;ReadPosRankSum=1.302;SB=-2.090e+02;SOR=0.815;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:17,27:44:99:813,0,395 2 30775299 rs12053428 G A 125.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.737;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.823;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.99;ReadPosRankSum=0.841;SB=-5.150e-01;SOR=1.751;VQSLOD=5.07;culprit=QD GT:AD:DP:GQ:PL 0/1:13,5:18:99:154,0,375 2 30791152 rs6749074 A G 533.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.210;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=-0.541;SB=-6.302e+01;SOR=0.565;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:13,18:31:99:562,0,398 2 30828792 rs2248777 G A 431.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-1.104;SB=-1.490e+02;SOR=0.955;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 0/1:17,17:34:99:460,0,403 2 30955528 rs2276567 C A 836.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.88;SB=-2.381e+02;SOR=2.147;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:63:865,63,0 2 30957326 rs2276568 A G 716.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.364;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=0.030;SB=-2.690e+02;SOR=0.665;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:32,28:60:99:745,0,866 2 30959262 rs509380 G T 3989.77 PASS AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-1.330e+03;SOR=1.990;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,128:128:99:4018,301,0 2 30961022 rs55799526 C G 1223.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.973;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=2.524;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=0.101;SB=-1.610e+02;SOR=1.211;VQSLOD=7.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,39:85:99:1252,0,1473 2 30964632 rs72783018 G A 443.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.958;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=-0.612;SB=-1.080e+02;SOR=0.382;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:11,17:28:99:472,0,326 2 30968228 rs7567391 A G 1119.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.354;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=10.574;HaplotypeScore=3.4250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=-0.598;SB=-3.330e+02;SOR=1.727;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 0/1:54,42:96:99:1148,0,1307 2 30968848 rs4245770 C T 51.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.18;ReadPosRankSum=0.330;SB=0.00;SOR=0.223;VQSLOD=9.20;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:80:80,0,246 2 30973825 rs1879283 C A 108.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.868;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.72;ReadPosRankSum=-0.928;SB=-1.765e+00;SOR=0.551;VQSLOD=9.17;culprit=QD GT:AD:DP:GQ:PL 0/1:14,5:19:99:137,0,472 2 30976058 rs2926304 C T 1547.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.749;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.881;SB=-7.980e+02;SOR=0.652;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:50,58:108:99:1576,0,1320 2 30977073 rs485100 G A 1544.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-9.190e+02;SOR=0.808;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1573,117,0 2 30980940 rs508405 C T 1154.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-3.480e+02;SOR=2.362;VQSLOD=7.26;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,39:39:90:1183,90,0 2 30986745 rs78355147 T C 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=1.971;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=0.211;SB=-1.240e+02;SOR=0.250;VQSLOD=9.50;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,11:21:99:247,0,304 2 30986989 rs579016 G T 1981.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;SB=-1.172e+03;SOR=0.784;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:68:99:2010,150,0 2 30999023 rs5830184 AT A 307.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQ0=0;MQRankSum=1.144;POSITIVE_TRAIN_SITE;QD=12.31;RPA=9,8;RU=T;ReadPosRankSum=-1.332;SB=-7.305e+01;SOR=0.473;STR;VQSLOD=3.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,16:31:99:345,0,189 2 31000370 rs6548033 G C 813.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=3.710;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=0.009;SB=-1.580e+02;SOR=0.223;VQSLOD=10.27;culprit=SOR GT:AD:DP:GQ:PL 0/1:25,28:53:99:842,0,834 2 31009977 rs1915125 G C 1176.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.69;SB=-2.511e+02;SOR=3.026;VQSLOD=5.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:90:1205,90,0 2 31010212 rs13021213 C T 1277.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.036;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=7.945;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=0.825;SB=-3.700e+02;SOR=1.483;VQSLOD=5.20;culprit=FS GT:AD:DP:GQ:PL 0/1:68,47:115:99:1306,0,1779 2 31133939 rs2278079 G C 2550.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.720;DB;DP=194;Dels=0.00;ExcessHet=3.0103;FS=0.546;HaplotypeScore=3.5872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=0.290;SB=-1.110e+03;SOR=0.762;VQSLOD=7.58;culprit=DP GT:AD:DP:GQ:PL 0/1:99,95:194:99:2579,0,2720 2 31134106 rs2278078 T A 257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.549;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=-1.494;SB=0.00;SOR=0.465;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:12,9:21:99:286,0,378 2 31135184 rs2288101 G T 1815.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.286;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=-1.369;SB=-9.700e+02;SOR=0.681;VQSLOD=8.33;culprit=FS GT:AD:DP:GQ:PL 0/1:80,72:152:99:1844,0,2343 2 31178393 rs73923310 T C 1382.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.396;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=12.330;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=0.260;SB=-7.450e+02;SOR=0.181;VQSLOD=5.32;culprit=FS GT:AD:DP:GQ:PL 0/1:45,57:102:99:1411,0,1351 2 31178818 rs2288100 C T 1236.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.629;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=1.488;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=1.457;SB=-7.070e+02;SOR=0.970;VQSLOD=7.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:68,54:122:99:1265,0,1783 2 31188957 rs889896 C T 644.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-1.403e+02;SOR=2.636;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:51:673,51,0 2 31189144 rs11539328 C T 999.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.111;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-0.425;SB=-5.970e+02;SOR=0.762;VQSLOD=8.09;culprit=FS GT:AD:DP:GQ:PL 0/1:46,41:87:99:1028,0,1205 2 31348335 rs4020219 ACC A 541.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;DB;DP=30;ExcessHet=3.0103;FS=3.771;MLEAC=1;MLEAF=0.500;MQ=60.36;MQ0=0;MQRankSum=1.071;POSITIVE_TRAIN_SITE;QD=19.35;RPA=6,4;RU=C;ReadPosRankSum=-0.230;SB=-1.200e+02;SOR=1.863;STR;VQSLOD=0.402;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,14:30:99:579,0,592 2 31348390 rs2216832 A G 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-0.832;SB=0.00;SOR=0.569;VQSLOD=10.22;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:203,0,229 2 31397372 rs7602062 G T 263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.816;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-0.134;SB=0.00;SOR=0.412;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:13,9:22:99:292,0,458 2 31397696 rs10168043 G C 4229.77 PASS AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-1.881e+03;SOR=1.542;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,138:138:99:4258,310,0 2 31397727 rs10180369 T C 3490.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.56;SB=-8.590e+02;SOR=2.572;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:3519,253,0 2 31397834 rs78398421 A G 271.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-0.076;SB=0.00;SOR=0.693;VQSLOD=9.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,10:20:99:300,0,322 2 31399358 rs7570373 T G 1476.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-6.390e+02;SOR=1.464;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1505,111,0 2 31399395 rs74636259 C T 751.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.248;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-0.046;SB=-4.450e+02;SOR=0.405;VQSLOD=9.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,30:59:99:780,0,791 2 31399414 rs7556787 G C 1836.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=-1.043e+03;SOR=0.914;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1865,135,0 2 31399659 rs6720151 T C 988.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.10;SB=-4.410e+02;SOR=1.255;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:75:1017,75,0 2 31399751 rs6720254 T G 1259.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.64;SB=-1.055e+02;SOR=4.112;VQSLOD=2.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:34:96:1288,96,0 2 31399988 rs4592896 C T 5684.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.910;DB;DP=200;Dels=0.00;ExcessHet=3.0103;FS=3.650;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.42;ReadPosRankSum=-0.494;SB=-3.228e+03;SOR=0.712;VQSLOD=2.81;culprit=DP GT:AD:DP:GQ:PL 1/1:1,199:200:99:5713,378,0 2 31400039 rs4516476 A G 4512.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.472;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=3.265;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.70;ReadPosRankSum=1.313;SB=-1.551e+03;SOR=2.099;VQSLOD=1.82;culprit=DP GT:AD:DP:GQ:PL 1/1:2,145:148:99:4541,289,0 2 31400502 rs13421721 A C 877.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.81;SB=-1.145e+02;SOR=3.442;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:906,66,0 2 31400510 rs1443707 G A 1007.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.75;SB=-1.553e+02;SOR=3.334;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:78:1036,78,0 2 31400722 rs1443706 G A 4921.77 PASS AC=2;AF=1.00;AN=2;DB;DP=161;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.57;SB=-2.986e+03;SOR=0.866;VQSLOD=6.21;culprit=DP GT:AD:DP:GQ:PL 1/1:0,161:161:99:4950,358,0 2 31400867 rs1373216 T C 843.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.945;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=-0.206;SB=-6.800e+01;SOR=0.534;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:23,30:53:99:872,0,730 2 31401188 rs4951967 A C 225.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.393;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.68;ReadPosRankSum=-0.782;SB=-2.801e+01;SOR=0.247;VQSLOD=9.77;culprit=QD GT:AD:DP:GQ:PL 0/1:17,9:26:99:254,0,556 2 31401290 rs4952052 A C 3160.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.92;SB=-1.110e+03;SOR=1.981;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:3189,229,0 2 31401499 rs28684727 G A 606.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.664;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=3.119;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=1.508;SB=-9.100e+01;SOR=1.262;VQSLOD=7.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,22:49:99:635,0,827 2 31403879 rs76939962 G A 906.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.168;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=1.707;SB=-4.220e+02;SOR=0.646;VQSLOD=8.56;culprit=FS GT:AD:DP:GQ:PL 0/1:44,37:81:99:935,0,1165 2 31403947 rs2028678 G A 1274.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.35;SB=-2.081e+02;SOR=3.056;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1303,102,0 2 31404001 rs2028677 T C 446.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SB=0.00;SOR=5.283;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:475,39,0 2 31409115 rs10445909 T C 1044.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=-8.497e+01;SOR=4.407;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:78:1073,78,0 2 31410653 rs7422120 C T 1301.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.93;SB=-6.500e+02;SOR=1.280;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:96:1330,96,0 2 31410708 rs1822496 C T 1527.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.78;SB=-9.740e+02;SOR=0.804;VQSLOD=4.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1556,114,0 2 31410728 rs764072 C A 1623.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.00;SB=-9.640e+02;SOR=1.009;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1652,120,0 2 31411184 rs1465972 C A 710.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.34;SB=-3.410e+02;SOR=1.022;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:54:739,54,0 2 31411242 rs1465973 C A 718.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-3.190e+02;SOR=1.519;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:54:747,54,0 2 31411310 rs1465974 C T 408.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;SB=-4.076e+01;SOR=3.611;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:437,33,0 2 31412096 rs55741080 T C 709.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.29;SB=-7.097e+01;SOR=3.716;VQSLOD=5.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:738,54,0 2 31412347 rs78099670 G A 1323.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.205;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=1.504;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=0.167;SB=-7.860e+02;SOR=0.517;VQSLOD=8.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,55:114:99:1352,0,1533 2 31412443 rs13382984 T C 2304.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;SB=-1.020e+03;SOR=1.362;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2333,175,0 2 31412646 rs1562021 T C 1788.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=-9.060e+02;SOR=1.329;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1817,138,0 2 31412670 rs1465976 C T 720.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=0.260;SB=-2.280e+02;SOR=0.877;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:21,27:48:99:749,0,467 2 31414223 rs13408524 G A 1793.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=-6.960e+02;SOR=1.649;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1822,138,0 2 31414807 rs1562022 C G 2483.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-1.200e+03;SOR=1.310;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2512,181,0 2 31415054 rs17010928 G A 1040.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.571;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=0.066;SB=-4.010e+02;SOR=0.581;VQSLOD=9.96;culprit=FS GT:AD:DP:GQ:PL 0/1:18,41:59:99:1069,0,477 2 31415077 rs10192210 G A 373.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.928;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.63;ReadPosRankSum=-0.662;SB=-7.500e+01;SOR=0.776;VQSLOD=9.39;culprit=QD GT:AD:DP:GQ:PL 0/1:34,15:49:99:402,0,1036 2 31415966 rs72797141 C T 206.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=0.682;SB=0.00;SOR=0.693;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:235,0,236 2 31415967 rs7591444 T C 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.183;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.682;SB=0.00;SOR=0.693;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:246,0,240 2 31420143 rs72797147 C T 1745.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.104;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=1.460;HaplotypeScore=4.2967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.408;SB=-6.030e+02;SOR=0.864;VQSLOD=7.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:71,63:134:99:1774,0,1830 2 31420245 rs7568661 A G 2402.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.650;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=1.239;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-1.586;SB=-1.511e+03;SOR=0.565;VQSLOD=7.00;culprit=DP GT:AD:DP:GQ:PL 0/1:72,93:165:99:2431,0,1723 2 31420383 rs7595609 G C 682.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.764;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=-0.649;SB=-1.360e+02;SOR=0.578;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:21,24:45:99:711,0,692 2 31420415 rs7595622 G A 427.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.474;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.447;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=-1.294;SB=-2.901e+01;SOR=1.646;VQSLOD=6.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,15:27:99:456,0,408 2 31420485 rs1443716 T C 335.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=0.00;SOR=4.804;VQSLOD=8.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:364,30,0 2 31422187 rs7602817 G A 265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.15;ReadPosRankSum=-0.980;SB=0.00;SOR=1.981;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 0/1:3,9:12:75:294,0,75 2 31422452 rs7563977 T A 1975.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.568;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=-1.408;SB=-8.390e+02;SOR=0.909;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 0/1:67,79:146:99:2004,0,1608 2 31422514 rs7564077 T A 1082.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.911;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=2.132;HaplotypeScore=2.5986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.698;SB=-3.690e+02;SOR=0.435;VQSLOD=9.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,41:84:99:1111,0,1160 2 31422601 rs7576637 A T 267.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=-0.329;SB=-5.800e+01;SOR=0.693;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:11,11:22:99:296,0,303 2 31423443 rs17011001 G A 1411.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=7.140;HaplotypeScore=2.6320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=0.229;SB=-9.500e+02;SOR=0.298;VQSLOD=8.18;culprit=FS GT:AD:DP:GQ:PL 0/1:60,58:118:99:1440,0,1672 2 31457817 rs2236170 T C 958.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-1.603e+02;SOR=3.180;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:72:987,72,0 2 31467079 rs2295471 G A 364.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=-7.497e+01;SOR=2.670;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:393,30,0 2 31467351 rs2295473 T A 2848.77 PASS AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=-1.438e+03;SOR=1.384;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,99:99:99:2877,214,0 2 31483890 rs13028669 T C 1373.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=-4.276e+01;SOR=5.994;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1402,117,0 2 31484334 rs654650 G A 3382.77 PASS AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.16;SB=-9.140e+02;SOR=2.494;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:102:99:3411,259,0 2 31488965 rs619002 C T 556.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;SB=-1.155e+02;SOR=2.833;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:585,45,0 2 31567743 rs566224 T C 2017.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=-6.600e+02;SOR=2.231;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2046,147,0 2 31569471 rs7599175 A G 1097.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-2.471e+02;SOR=2.899;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:84:1126,84,0 2 31570376 rs1366813 T C 3064.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-9.770e+02;SOR=1.855;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:3093,229,0 2 31570626 rs4952083 C T 1492.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-1.185e+02;SOR=4.615;VQSLOD=5.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1521,117,0 2 31570631 rs4952084 A G 1356.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-8.297e+01;SOR=4.921;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:99:1385,102,0 2 31570689 rs4952085 G A 392.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.76;SB=0.00;SOR=4.977;VQSLOD=7.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:421,33,0 2 31571241 rs13415401 G C 2172.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.95;SB=-1.273e+03;SOR=0.693;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2201,160,0 2 31571786 rs1884725 A G 2064.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3816;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.77;SB=-9.780e+02;SOR=1.179;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2093,150,0 2 31572318 rs371448559 G A 210.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.314;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.05;ReadPosRankSum=2.147;SB=-1.765e+00;SOR=1.828;VQSLOD=6.69;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,7:14:99:239,0,184 2 31572398 rs1429374 A G 1455.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.66;SB=-2.680e+02;SOR=3.056;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1484,108,0 2 31572482 . T TG 3267.73 PASS AC=2;AF=1.00;AN=2;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;RPA=4,5;RU=G;SB=-1.171e+03;SOR=1.477;STR;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:87:99:3305,259,0 2 31587235 rs1018505 G A 1025.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.17;SB=-4.000e+02;SOR=1.819;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:78:1054,78,0 2 31588288 rs2365842 T A 2768.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.69;SB=-1.719e+03;SOR=0.863;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:2797,202,0 2 31588561 rs1429376 A C 504.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.89;SB=-4.276e+01;SOR=3.767;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:533,39,0 2 31588577 rs17011356 A G 144.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=0.805;SB=-4.376e+01;SOR=0.160;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:173,0,165 2 31589654 rs13387204 T C 388.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.789;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.019;SB=-1.766e+00;SOR=1.154;VQSLOD=10.04;culprit=FS GT:AD:DP:GQ:PL 0/1:19,13:32:99:417,0,639 2 31589847 rs2295475 G A 1829.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=4.152;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=1.095;SB=-8.100e+02;SOR=1.082;VQSLOD=7.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,70:136:99:1858,0,1686 2 31590759 rs2281550 C T 800.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.412;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=8.901;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=-0.915;SB=-2.983e+02;SOR=0.083;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 0/1:15,30:45:99:829,0,486 2 31590785 rs761926 C G 592.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.243;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.960;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.85;ReadPosRankSum=-0.535;SB=-1.400e+02;SOR=1.349;VQSLOD=6.37;culprit=QD GT:AD:DP:GQ:PL 0/1:44,23:67:99:621,0,1320 2 31595424 rs10171290 T C 261.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.166;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.80;ReadPosRankSum=-0.886;SB=0.00;SOR=1.802;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:3,8:11:79:290,0,79 2 31596955 rs4952086 G A 428.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.769;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=-0.791;SB=-2.120e+02;SOR=0.242;VQSLOD=9.64;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,16:26:99:457,0,289 2 31596963 rs4952087 T C 354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=4.200;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=-0.167;SB=-2.150e+02;SOR=0.169;VQSLOD=9.79;culprit=SOR GT:AD:DP:GQ:PL 0/1:9,13:22:99:383,0,261 2 31598485 rs2070294 T C 268.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.061;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.905;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.27;ReadPosRankSum=-1.553;SB=-9.732e-01;SOR=1.702;VQSLOD=5.18;culprit=QD GT:AD:DP:GQ:PL 0/1:18,11:29:99:297,0,565 2 31600146 rs10187719 T C 800.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.82;SB=-7.897e+01;SOR=4.003;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:829,60,0 2 31609448 rs477626 A C 1167.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.80;SB=-6.740e+02;SOR=1.127;VQSLOD=5.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:84:1196,84,0 2 31611029 rs2073316 G A 125.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.201;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.62;ReadPosRankSum=-0.132;SB=-3.876e+01;SOR=0.193;VQSLOD=9.89;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:154,0,389 2 31611367 rs206847 T C 148.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.044;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=-1.418;SB=-1.765e+00;SOR=1.609;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:177,0,208 2 31805706 rs523349 G C 530.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.76;SB=-3.876e+01;SOR=4.047;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:559,42,0 2 31805880 rs61748121 A AG 1857.73 PASS AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.73;RPA=2,3;RU=G;SB=-8.810e+02;SOR=0.829;STR;VQSLOD=4.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1895,135,0 2 31806031 rs632148 C G 636.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=-2.151e+02;SOR=1.828;VQSLOD=5.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:48:665,48,0 2 32148619 rs17011697 G T 314.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.018;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.974;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-0.129;SB=-1.020e+02;SOR=0.287;VQSLOD=10.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,12:26:99:343,0,425 2 32148636 rs34645083 T A 357.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.642;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.581;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=-0.776;SB=-2.000e+02;SOR=0.190;VQSLOD=9.59;culprit=SOR GT:AD:DP:GQ:PL 0/1:17,17:34:99:386,0,518 2 32188138 rs67493880 C T 1038.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.645;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=-1.706;SB=-6.350e+02;SOR=0.648;VQSLOD=8.45;culprit=FS GT:AD:DP:GQ:PL 0/1:59,46:105:99:1067,0,1495 2 32248479 rs35295282 C CCATT 977.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.33;ReadPosRankSum=-0.888;SB=-2.790e+02;SOR=0.495;VQSLOD=7.64;culprit=FS GT:AD:DP:GQ:PL 0/1:10,15:25:99:1015,0,621 2 32312700 rs7561519 T C 205.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=0.230;SB=-7.497e+01;SOR=0.582;VQSLOD=10.13;culprit=FS GT:AD:DP:GQ:PL 0/1:2,9:11:53:234,0,53 2 32324072 rs7566162 T C 393.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.451;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.12;ReadPosRankSum=-0.590;SB=-3.477e+01;SOR=0.299;VQSLOD=9.11;culprit=FS GT:AD:DP:GQ:PL 0/1:10,13:23:99:422,0,324 2 32361482 rs67290204 T TC 286.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=1.661;SB=0.00;SOR=0.392;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 0/1:12,8:20:99:324,0,489 2 32362079 rs34202456 G GTATA 1668.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;DB;DP=61;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.35;RPA=2,4;RU=TA;ReadPosRankSum=0.205;SB=-7.510e+02;SOR=0.785;STR;VQSLOD=5.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,27:61:99:1706,0,1685 2 32369901 rs2365556 T C 846.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.47;SB=-6.997e+01;SOR=4.091;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:875,66,0 2 32418808 rs212751 T A 604.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=-2.001e+02;SOR=1.863;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:48:633,48,0 2 32429497 rs212762 A T 95.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.98;ReadPosRankSum=0.738;SB=0.00;SOR=0.269;VQSLOD=9.14;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:99:124,0,250 2 32429880 rs34353191 A AT 220.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.486;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQ0=0;MQRankSum=1.525;POSITIVE_TRAIN_SITE;QD=6.69;RPA=19,20;RU=T;ReadPosRankSum=1.225;SB=-1.773e+00;SOR=1.609;STR;VQSLOD=2.59;culprit=QD GT:AD:DP:GQ:PL 0/1:17,16:45:99:258,0,221 2 32434701 rs212685 A G 1230.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-2.700e+02;SOR=2.247;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:93:1259,93,0 2 32449877 rs2366742 T A 405.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.176;HaplotypeScore=5.7599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.99;ReadPosRankSum=0.921;SB=-2.601e+01;SOR=1.493;VQSLOD=5.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,13:29:99:434,0,454 2 32449878 rs199847843 T A 406.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.176;HaplotypeScore=5.7599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.03;ReadPosRankSum=0.965;SB=-2.801e+01;SOR=1.493;VQSLOD=5.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,13:29:99:435,0,455 2 32449879 rs200950944 T A 412.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.218;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.7599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.74;ReadPosRankSum=0.691;SB=-3.100e+01;SOR=1.078;VQSLOD=7.99;culprit=FS GT:AD:DP:GQ:PL 0/1:15,13:28:99:441,0,422 2 32460348 rs212714 A G 139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=0.618;SB=0.00;SOR=0.693;VQSLOD=9.99;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:168,0,203 2 32461493 rs67875623 T TC 441.74 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=0.00;SOR=4.804;VQSLOD=7.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:479,30,0 2 32466029 rs212721 A G 583.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.843;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=1.762;SB=-2.150e+02;SOR=1.195;VQSLOD=7.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,21:57:99:612,0,882 2 32475109 rs455060 G A 1570.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=9.824;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=-1.162;SB=-9.680e+02;SOR=0.392;VQSLOD=5.37;culprit=FS GT:AD:DP:GQ:PL 0/1:63,60:123:99:1599,0,1767 2 32476390 rs408813 T G 2553.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=11.018;DB;DP=171;Dels=0.00;ExcessHet=3.0103;FS=1.193;HaplotypeScore=6.1560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=-1.041;SB=-1.380e+03;SOR=0.604;VQSLOD=7.29;culprit=DP GT:AD:DP:GQ:PL 0/1:82,89:171:99:2582,0,2075 2 32617052 rs62136276 G A 460.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.514;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.166;SB=-6.400e+01;SOR=0.602;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:24,16:40:99:489,0,790 2 32655873 rs370529825 CT C 176.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=1.146;QD=6.31;RPA=21,20;RU=T;ReadPosRankSum=1.774;SB=-2.578e+01;SOR=0.252;STR;VQSLOD=1.46;culprit=QD GT:AD:DP:GQ:PL 0/1:13,15:29:99:214,0,218 2 32661098 rs62136293 A G 637.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.928;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.239;HaplotypeScore=2.9137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=-0.965;SB=-1.660e+02;SOR=0.470;VQSLOD=9.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,22:59:99:666,0,1032 2 32666411 rs41291167 T C 936.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.918;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.147;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=-0.914;SB=-3.890e+02;SOR=0.404;VQSLOD=9.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,36:58:99:965,0,542 2 32667058 rs55734616 C A 491.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.36;SB=0.00;SOR=5.283;VQSLOD=8.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:520,39,0 2 32667061 rs60955793 T A 492.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=0.00;SOR=5.421;VQSLOD=8.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:521,42,0 2 32667182 rs60197615 G C 2025.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-9.900e+02;SOR=1.341;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2054,147,0 2 32690189 rs35682129 A G 297.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=1.143;SB=-1.590e+02;SOR=0.612;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 0/1:10,14:24:99:326,0,253 2 32695532 rs56347254 A G 91.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.982;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.55;ReadPosRankSum=1.488;SB=0.00;SOR=0.188;VQSLOD=8.88;culprit=QD GT:AD:DP:GQ:PL 0/1:10,4:14:99:120,0,336 2 32706579 rs9646977 T A 565.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-3.377e+01;SOR=4.174;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:45:594,45,0 2 32712875 rs2366891 A C 2011.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.53;SB=-5.730e+02;SOR=2.226;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:2040,147,0 2 32713706 rs2366894 A T 733.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=-0.254;SB=-4.960e+02;SOR=0.617;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:38,34:72:99:762,0,1060 2 32855615 rs2710623 A G 651.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-2.880e+02;SOR=1.609;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:48:680,48,0 2 32865521 rs1031261 G C 2671.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.410;DB;DP=202;Dels=0.00;ExcessHet=3.0103;FS=7.120;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-0.639;SB=-1.511e+03;SOR=0.376;VQSLOD=4.98;culprit=DP GT:AD:DP:GQ:PL 0/1:103,99:202:99:2700,0,2824 2 32897231 rs2295731 C G 216.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.040;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=0.682;SB=0.00;SOR=0.693;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:245,0,241 2 32928119 rs7586406 A G 388.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.291;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.20;ReadPosRankSum=-0.176;SB=-7.400e+01;SOR=0.560;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:10,14:24:99:417,0,317 2 32959024 rs1551177 T C 1330.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.834;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-1.516;SB=-5.510e+02;SOR=0.668;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:56,52:108:99:1359,0,1448 2 32961745 rs10200333 T A 3550.77 PASS AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.35;SB=-1.266e+03;SOR=2.053;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,117:117:99:3579,274,0 2 32961858 rs2273660 A G 2152.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.680;DB;DP=175;Dels=0.00;ExcessHet=3.0103;FS=1.880;HaplotypeScore=5.3033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-1.724;SB=-1.238e+03;SOR=0.881;VQSLOD=7.23;culprit=DP GT:AD:DP:GQ:PL 0/1:91,84:175:99:2181,0,2242 2 32983299 rs71407470 TA T 301.37 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;DB;DP=17;ExcessHet=3.0103;FS=3.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.73;RPA=11,10;RU=A;ReadPosRankSum=-1.791;SB=-7.207e+01;SOR=2.448;STR;VQSLOD=4.14;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:2,15:17:8:338,0,8 2 33005238 rs6729463 T C 419.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=-8.297e+01;SOR=2.985;VQSLOD=7.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:448,36,0 2 33036324 rs3731578 G A 659.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-1.503e+02;SOR=2.636;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:51:688,51,0 2 33174072 rs150654 A C 1138.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-3.130e+02;SOR=2.368;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:84:1167,84,0 2 33335847 rs218226 C T 4189.77 PASS AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.30;SB=-2.171e+03;SOR=1.260;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,143:143:99:4218,313,0 2 33414009 rs3922572 T A 853.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.841;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;MQRankSum=0.400;POSITIVE_TRAIN_SITE;QD=32.84;ReadPosRankSum=0.133;SB=-7.697e+01;SOR=2.833;VQSLOD=2.61;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,25:26:35:882,35,0 2 33500734 rs1814548 A G 362.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=1.468;POSITIVE_TRAIN_SITE;QD=18.14;ReadPosRankSum=-0.833;SB=-3.677e+01;SOR=0.223;VQSLOD=3.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,13:20:99:391,0,225 2 33525382 rs935996 A C 301.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.203;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.894;SB=-3.577e+01;SOR=0.165;VQSLOD=10.15;culprit=SOR GT:AD:DP:GQ:PL 0/1:12,11:23:99:330,0,403 2 33540138 rs2276591 G A 256.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.811;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-1.319;SB=-3.200e+01;SOR=0.527;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:12,10:22:99:285,0,385 2 33540172 . A AT 336.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;DP=41;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.63;RPA=7,8;RU=T;ReadPosRankSum=1.100;SB=-7.600e+01;SOR=0.368;STR;VQSLOD=9.27;culprit=QD GT:AD:DP:GQ:PL 0/1:23,16:41:99:374,0,540 2 33540248 rs1058840 G A 1201.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.468;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-1.149;SB=-5.080e+02;SOR=0.772;VQSLOD=8.73;culprit=FS GT:AD:DP:GQ:PL 0/1:43,48:91:99:1230,0,1121 2 33568113 rs10185623 A G 1041.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.451;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=-2.055;SB=-2.970e+02;SOR=0.725;VQSLOD=8.73;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:40,41:81:99:1070,0,1196 2 33568137 rs5024713 G A 816.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.179;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=-1.327;SB=-1.930e+02;SOR=1.222;VQSLOD=7.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,31:63:99:845,0,900 2 33568191 rs5024712 T C 252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.507;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.192;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=2.049;SB=-2.801e+01;SOR=1.460;VQSLOD=6.02;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:13,10:23:99:281,0,350 2 33585796 rs4422143 T C 4973.77 PASS AC=2;AF=1.00;AN=2;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=-2.780e+03;SOR=0.843;VQSLOD=5.78;culprit=DP GT:AD:DP:GQ:PL 1/1:0,170:170:99:5002,364,0 2 33586464 . C CT 434.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;DP=40;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=0;MQRankSum=-0.694;POSITIVE_TRAIN_SITE;QD=12.08;RPA=14,15;RU=T;ReadPosRankSum=0.049;SB=-1.230e+02;SOR=1.101;STR;VQSLOD=0.233;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,23:40:99:472,0,205 2 33614187 rs642472 C T 1000.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.612;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=2.536;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-0.956;SB=-1.600e+02;SOR=1.218;VQSLOD=7.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,40:82:99:1029,0,1211 2 33622448 rs2367734 T C 760.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.377;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=7.543;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-0.550;SB=-1.417e+01;SOR=1.969;VQSLOD=5.63;culprit=FS GT:AD:DP:GQ:PL 0/1:36,25:61:99:789,0,1059 2 33622475 rs12053346 T C 292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.971;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.707;HaplotypeScore=2.8097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.13;ReadPosRankSum=-0.067;SB=-5.150e-01;SOR=1.885;VQSLOD=5.27;culprit=QD GT:AD:DP:GQ:PL 0/1:24,12:37:99:321,0,771 2 33623288 rs626121 T C 655.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.69;SB=0.00;SOR=5.784;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:684,51,0 2 33623306 rs2034693 C T 703.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.12;SB=0.00;SOR=6.091;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:57:732,57,0 2 33623387 rs624060 A G 2130.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=-9.000e+02;SOR=1.545;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2159,154,0 2 33623388 rs624058 T C 2155.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-9.330e+02;SOR=1.545;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2184,157,0 2 33623720 rs8970 A G 343.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.549;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.09;ReadPosRankSum=0.497;SB=0.00;SOR=1.022;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:19:99:372,0,267 2 33623734 rs622716 A G 608.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.53;SB=0.00;SOR=5.670;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:637,48,0 2 33643740 rs6724875 T G 257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.3734;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;MQRankSum=2.004;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=-1.546;SB=-1.245e+02;SOR=0.307;VQSLOD=3.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,14:18:99:286,0,117 2 33744958 rs7597095 C T 831.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=-2.181e+02;SOR=2.147;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:66:860,66,0 2 33745208 rs2305576 T C 2200.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.1796;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.96;SB=-1.228e+03;SOR=1.194;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2229,169,0 2 33745336 rs2305575 T C 1072.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.10;SB=-4.370e+02;SOR=1.255;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:81:1101,81,0 2 33745402 rs2305574 A G 1153.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.09;SB=-4.270e+02;SOR=1.473;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:87:1182,87,0 2 33748838 rs2305571 A G 376.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.16;SB=0.00;SOR=4.804;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:405,30,0 2 33764286 rs7592762 T C 2440.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-1.301e+03;SOR=1.022;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2469,178,0 2 33783605 rs114072954 C T 268.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.747;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.925;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=-0.191;SB=-1.080e+02;SOR=0.138;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:13,12:25:99:297,0,433 2 33784161 rs2278955 G A 2381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-1.415e+03;SOR=0.798;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2410,178,0 2 33784500 rs2278956 G A 475.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-1.205e+02;SOR=2.147;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:504,39,0 2 33787976 rs10572554 CCTAA C 2051.73 PASS AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.20;RPA=3,2;RU=CTAA;SB=-3.271e+02;SOR=3.126;STR;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:44:96:2089,96,0 2 33861925 rs62150508 C G 120.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=0.307;SB=-6.700e+01;SOR=1.329;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:149,0,145 2 33952022 rs4670913 C A 717.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.46;SB=0.00;SOR=5.994;VQSLOD=9.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:746,57,0 2 33952055 rs2290101 C G 529.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.197;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.07;ReadPosRankSum=1.257;SB=0.00;SOR=1.519;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:8,16:24:99:558,0,256 2 33952413 rs4477896 T C 1484.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.580;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.749;HaplotypeScore=6.3569;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-0.976;SB=-7.700e+02;SOR=0.820;VQSLOD=7.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,54:103:99:1513,0,1140 2 33952456 rs2367810 C G 3369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.5272;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-2.089e+03;SOR=0.884;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,112:112:99:3398,253,0 2 33952770 rs75672894 G T 436.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.696;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.261;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=1.077;SB=-1.180e+02;SOR=1.398;VQSLOD=6.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,15:32:99:465,0,390 2 34065274 . C T 130.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=41.51;MQ0=0;MQRankSum=-3.070;QD=8.72;ReadPosRankSum=-1.103;SB=0.00;SOR=1.473;VQSLOD=1.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,10:15:99:159,0,169 2 34065280 . T C 129.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=44.09;MQ0=0;MQRankSum=-3.500;QD=7.63;ReadPosRankSum=0.098;SB=0.00;SOR=1.061;VQSLOD=1.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,10:17:99:158,0,240 2 34065295 . CA C 235.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.07;MQ0=0;MQRankSum=-3.923;QD=14.73;ReadPosRankSum=-0.723;SB=0.00;SOR=0.495;VQSLOD=1.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,7:16:99:273,0,388 2 34065300 . C T 214.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.480;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.30;MQ0=0;MQRankSum=-4.157;QD=8.59;ReadPosRankSum=-0.567;SB=0.00;SOR=0.116;VQSLOD=1.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,16:25:99:243,0,312 2 34065333 . A T 331.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.337;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.26;MQ0=1;MQRankSum=-5.675;QD=7.90;ReadPosRankSum=1.381;SB=-3.400e+01;SOR=0.877;VQSLOD=0.157;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,24:42:99:360,0,407 2 35696519 rs62143301 G A 269.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.085;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.618;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.17;ReadPosRankSum=0.506;SB=-1.670e+02;SOR=0.175;VQSLOD=8.67;culprit=QD GT:AD:DP:GQ:PL 0/1:21,12:33:99:298,0,544 2 35696612 rs4670472 C T 889.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.81;SB=-4.230e+02;SOR=1.473;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:66:918,66,0 2 36605260 rs117674202 C A 539.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=0.000;SB=-2.480e+02;SOR=0.703;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:18,21:39:99:568,0,459 2 36605304 rs4670546 G A 940.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.757;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=5.616;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=-0.924;SB=-2.940e+02;SOR=1.508;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 0/1:26,33:59:99:969,0,653 2 36605585 rs4670548 A G 2194.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=-5.460e+02;SOR=2.448;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2223,163,0 2 36691951 rs711252 A C 589.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.69;SB=0.00;SOR=5.784;VQSLOD=8.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:618,51,0 2 36704144 rs848547 C T 2130.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.59;SB=-1.269e+03;SOR=0.749;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2159,157,0 2 36706511 rs711250 G C 722.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.32;SB=0.00;SOR=5.994;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:751,57,0 2 36706947 rs848543 C T 904.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.15;SB=0.00;SOR=6.439;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:72:933,72,0 2 36739553 rs848526 T C 1124.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.14;SB=-2.031e+02;SOR=3.321;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:93:1153,93,0 2 36756288 rs711247 T C 1995.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.51;SB=-1.249e+03;SOR=0.750;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2024,147,0 2 36775410 . CTT C 358.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;DP=31;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=58.91;MQ0=0;MQRankSum=1.104;POSITIVE_TRAIN_SITE;QD=12.37;RPA=16,14;RU=T;ReadPosRankSum=-0.153;SB=-1.430e+02;SOR=1.110;STR;VQSLOD=0.145;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,15:31:99:396,0,291 2 36779144 rs10180760 T G 777.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.931;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.945;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-0.082;SB=-2.640e+02;SOR=1.431;VQSLOD=7.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,28:56:99:806,0,705 2 36779312 rs12612474 C G 694.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.938;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=10.796;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=0.192;SB=-2.310e+02;SOR=1.837;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 0/1:42,28:71:99:723,0,1122 2 36781401 rs1533946 T C 1023.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.924;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=5.835;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=-1.604;SB=-2.340e+02;SOR=1.651;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 0/1:29,32:61:99:1052,0,766 2 36782886 rs848642 G A 3399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=-1.453e+03;SOR=1.440;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,107:107:99:3428,253,0 2 36785459 rs17019091 T C 264.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.976;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.721;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=-0.292;SB=-1.780e+02;SOR=0.223;VQSLOD=9.03;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,13:27:99:293,0,357 2 36805676 rs2075226 A G 756.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.790;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.60;ReadPosRankSum=-0.896;SB=-4.270e+02;SOR=0.708;VQSLOD=8.50;culprit=QD GT:AD:DP:GQ:PL 0/1:53,35:88:99:785,0,1265 2 36806021 rs2072534 G A 657.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.244;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=0.646;SB=-1.590e+02;SOR=0.846;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 0/1:17,26:43:99:686,0,410 2 36806051 rs2072533 A G 491.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.799;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.341;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=0.600;SB=-2.801e+01;SOR=1.508;VQSLOD=5.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,15:28:99:520,0,384 2 36808350 rs848638 C T 726.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.61;SB=-7.697e+01;SOR=3.816;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:57:755,57,0 2 36808732 rs848637 T G 1307.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-5.360e+02;SOR=1.721;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:96:1336,96,0 2 36810586 rs14291 T C 715.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.597;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=3.078;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-0.543;SB=-3.160e+02;SOR=0.296;VQSLOD=10.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,30:47:99:744,0,453 2 36943338 rs4670597 C G 712.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.28;SB=-8.197e+01;SOR=3.716;VQSLOD=5.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:741,54,0 2 36943419 rs4670598 T C 1690.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.19;SB=-8.460e+02;SOR=1.302;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1719,126,0 2 36994439 rs11124542 A C 285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-1.209;SB=-1.030e+02;SOR=0.751;VQSLOD=9.88;culprit=FS GT:AD:DP:GQ:PL 0/1:16,13:29:99:314,0,428 2 37001570 rs974964 C T 1290.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-5.340e+02;SOR=1.556;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:96:1319,96,0 2 37008759 . T C 570.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.187;DP=63;Dels=0.00;ExcessHet=3.0103;FS=3.819;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.06;ReadPosRankSum=-0.964;SB=-1.830e+02;SOR=1.254;VQSLOD=5.33;culprit=QD GT:AD:DP:GQ:PL 0/1:40,23:63:99:599,0,1015 2 37010574 rs3821147 G A 899.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.162;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=1.806;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=0.018;SB=-4.400e+02;SOR=0.929;VQSLOD=7.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,33:85:99:928,0,1291 2 37041439 rs11901202 C T 1313.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.665;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.673;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.266;SB=-7.230e+02;SOR=0.766;VQSLOD=8.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:67,54:121:99:1342,0,1881 2 37088083 rs2540935 C T 362.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=0.00;SOR=4.804;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:391,30,0 2 37094945 rs2540923 A G 841.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-4.000e+02;SOR=1.302;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:63:870,63,0 2 37095139 rs6752845 G C 128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.20;ReadPosRankSum=0.064;SB=0.00;SOR=0.307;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:9,5:14:99:157,0,328 2 37111045 rs2691106 T A 105.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=1.221;SB=-3.000e+01;SOR=1.508;VQSLOD=8.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,5:10:99:134,0,136 2 37230734 rs17497654 C T 1059.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.277;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.865;HaplotypeScore=4.5338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.849;SB=-6.080e+02;SOR=0.546;VQSLOD=9.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,46:81:99:1088,0,899 2 37255015 rs2540998 G A 338.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.954;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-0.571;SB=-5.800e+01;SOR=0.582;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:20,13:33:99:367,0,614 2 37264935 rs4670650 A T 263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=0.830;SB=0.00;SOR=0.941;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:292,0,219 2 37265282 . T C 231.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.20;ReadPosRankSum=0.372;SB=0.00;SOR=0.446;VQSLOD=8.55;culprit=FS GT:AD:DP:GQ:PL 0/1:11,8:19:99:260,0,379 2 37267709 . G GTACTGAATTGAGTA 746.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.33;RPA=1,2;RU=TACTGAATTGAGTA;ReadPosRankSum=0.233;SB=0.00;SOR=0.446;STR;VQSLOD=8.69;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:20:99:784,0,922 2 37276993 . TAA T 125.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQ0=0;MQRankSum=0.438;QD=4.66;RPA=20,18;RU=A;ReadPosRankSum=-0.027;SB=-6.973e+00;SOR=0.941;STR;VQSLOD=1.75;culprit=QD GT:AD:DP:GQ:PL 0/1:19,8:34:99:163,0,324 2 37288917 rs62133112 A T 224.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.48;ReadPosRankSum=0.105;SB=0.00;SOR=1.609;VQSLOD=9.34;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:80:253,0,80 2 37302556 rs34545380 GA G 1344.73 PASS AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;RPA=9,8;RU=A;SB=-2.630e+02;SOR=2.970;STR;VQSLOD=2.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1382,153,0 2 37306343 rs6743906 G A 2399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-1.280e+03;SOR=0.855;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2428,184,0 2 37317869 rs4670654 C T 732.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-3.140e+02;SOR=1.426;VQSLOD=4.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:761,57,0 2 37342456 rs4648231 T C 1390.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3471;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=-3.240e+02;SOR=2.362;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1419,105,0 2 37349581 . G A 155.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.13;ReadPosRankSum=1.011;SB=0.00;SOR=0.473;VQSLOD=8.36;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:184,0,285 2 37353434 rs200941283 G A 289.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.343;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.10;ReadPosRankSum=1.133;SB=-6.600e+01;SOR=0.818;VQSLOD=8.54;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:318,0,176 2 37365798 rs2307483 A G 408.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.448;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=0.475;SB=-1.370e+02;SOR=1.102;VQSLOD=10.12;culprit=FS GT:AD:DP:GQ:PL 0/1:15,16:31:99:437,0,342 2 37366688 rs2307474 T C 678.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.431;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.985;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=-0.813;SB=-1.120e+02;SOR=1.230;VQSLOD=7.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,23:46:99:707,0,681 2 37373982 rs34115903 A AT 3018.73 PASS AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-1.001e+03;SOR=1.685;VQSLOD=5.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:3056,190,0 2 37406644 rs10182091 A G 727.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=0.688;SB=-4.350e+02;SOR=0.760;VQSLOD=8.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,29:73:99:756,0,1183 2 37406680 rs10205833 C G 605.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.971;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=0.520;SB=-3.110e+02;SOR=0.446;VQSLOD=9.16;culprit=FS GT:AD:DP:GQ:PL 0/1:38,25:63:99:634,0,1094 2 37406761 rs4459710 T C 340.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.081;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=5.584;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=-0.400;SB=-1.900e+02;SOR=0.163;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:20,15:35:99:369,0,551 2 37406807 rs2111630 A G 204.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.48;MQ0=1;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=-1.103;SB=-3.876e+01;SOR=0.155;VQSLOD=9.40;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,10:20:99:233,0,341 2 37415496 rs11124566 G C 628.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.964;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.437;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.55;ReadPosRankSum=1.943;SB=-1.480e+02;SOR=1.008;VQSLOD=6.23;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:15,23:38:99:657,0,371 2 37428743 rs2540973 C T 93.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.52;ReadPosRankSum=1.097;SB=-9.732e-01;SOR=1.981;VQSLOD=5.81;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:99:122,0,180 2 37439411 rs371303058 C A 671.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.943;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.749;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.99;ReadPosRankSum=-0.754;SB=-3.000e+01;SOR=2.391;VQSLOD=4.45;culprit=FS GT:AD:DP:GQ:PL 0/1:11,21:32:99:700,0,283 2 37447458 . C CA 216.73 PASS AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.84;RPA=14,15;RU=A;SB=-4.179e+01;SOR=3.056;STR;VQSLOD=0.066;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:21:48:254,48,0 2 37447465 rs11124567 A G 417.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.099;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.643;HaplotypeScore=4.6992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.99;ReadPosRankSum=0.770;SB=-2.501e+01;SOR=1.938;VQSLOD=4.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,13:23:99:446,0,225 2 37447475 rs74177066 T A 437.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.062;DB;DP=24;Dels=0.04;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.5540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.03;ReadPosRankSum=1.298;SB=-6.700e+01;SOR=1.292;VQSLOD=8.03;culprit=FS GT:AD:DP:GQ:PL 0/1:9,14:23:99:466,0,182 2 37456032 rs2098386 C T 2351.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-9.220e+02;SOR=1.609;VQSLOD=7.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2380,178,0 2 37458668 rs3213746 G A 2148.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.869;DB;DP=164;Dels=0.00;ExcessHet=3.0103;FS=1.263;HaplotypeScore=2.4875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=0.431;SB=-8.850e+02;SOR=0.842;VQSLOD=7.98;culprit=DP GT:AD:DP:GQ:PL 0/1:81,83:164:99:2177,0,2040 2 37459208 rs17020344 C T 487.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.121;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.221;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=-0.839;SB=-1.380e+02;SOR=1.022;VQSLOD=7.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,20:52:99:516,0,884 2 37465157 rs149775309 ATTAC A 281.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.41;RPA=2,1;RU=TTAC;ReadPosRankSum=0.732;SB=0.00;SOR=1.179;STR;VQSLOD=8.60;culprit=FS GT:AD:DP:GQ:PL 0/1:3,5:10:99:319,0,184 2 37474386 rs78879417 G A 434.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.091;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.564;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=1.634;SB=-1.280e+02;SOR=1.085;VQSLOD=6.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,17:30:99:463,0,322 2 37486527 rs2714470 A G 102.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=-0.816;SB=0.00;SOR=0.412;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:131,0,200 2 37505105 rs10460527 T G 2576.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.028;DB;DP=183;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=1.587;SB=-1.111e+03;SOR=0.758;VQSLOD=7.54;culprit=DP GT:AD:DP:GQ:PL 0/1:91,92:183:99:2605,0,2291 2 37506939 rs3770761 A G 1950.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.748;DB;DP=180;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-0.871;SB=-1.236e+03;SOR=0.724;VQSLOD=7.35;culprit=DP GT:AD:DP:GQ:PL 0/1:99,81:180:99:1979,0,2629 2 37513586 rs2287091 A G 281.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.78;ReadPosRankSum=0.736;SB=-3.401e+01;SOR=1.609;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:5,10:15:99:310,0,149 2 37516481 rs2302649 T C 602.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.711;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.396;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=-0.577;SB=-9.100e+01;SOR=1.226;VQSLOD=7.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,22:58:99:631,0,1071 2 37543371 rs6544066 A G 738.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.016;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=10.014;HaplotypeScore=2.6639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=1.384;SB=-2.890e+02;SOR=0.108;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 0/1:31,29:60:99:767,0,986 2 37579937 rs2230299 C T 1116.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.318;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=1.309;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=0.445;SB=-1.280e+02;SOR=0.997;VQSLOD=7.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,38:68:99:1145,0,875 2 37579971 rs2255991 C T 1309.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.945;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.976;HaplotypeScore=3.3861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=-0.507;SB=-3.190e+02;SOR=0.933;VQSLOD=7.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,45:83:99:1338,0,1080 2 37586681 rs2302651 A G 951.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.73;SB=-2.391e+02;SOR=2.621;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:78:980,78,0 2 37587040 rs3815555 C A 987.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.815;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=1.110;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=1.013;SB=-1.950e+02;SOR=0.992;VQSLOD=7.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,36:78:99:1016,0,1253 2 37587132 rs4670196 C T 117.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.06;ReadPosRankSum=-1.217;SB=0.00;SOR=0.368;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:8,5:13:99:146,0,288 2 37595696 rs1468816 A C 915.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.311;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.961;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=2.301;SB=-3.740e+02;SOR=0.498;VQSLOD=8.86;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:42,33:75:99:944,0,1042 2 37599680 rs10490448 G A 1640.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.762;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-2.044;SB=-1.078e+03;SOR=0.674;VQSLOD=9.15;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:43,68:111:99:1669,0,1193 2 37872871 rs15628 C T 678.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.364;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.641;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=-1.628;SB=-1.810e+02;SOR=1.251;VQSLOD=7.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,26:53:99:707,0,785 2 38178362 rs2197561 T C 630.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.244;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.038;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=-0.312;SB=-4.280e+02;SOR=0.473;VQSLOD=10.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,27:56:99:659,0,711 2 38179134 rs4670800 G A 2193.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.90;SB=-1.238e+03;SOR=0.904;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2222,166,0 2 38208233 rs1446297 T C 333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.066;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=8.432;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=-0.936;SB=-1.352e-01;SOR=2.833;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 0/1:22,11:33:99:362,0,575 2 38244818 rs11901988 A C 194.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=-1.104;SB=-7.200e+01;SOR=0.693;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:98:223,0,98 2 38244824 rs11891536 G A 181.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=-1.004;SB=-7.100e+01;SOR=0.693;VQSLOD=10.32;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:210,0,99 2 38298150 rs1056837 A G 1623.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=1.436;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=-0.225;SB=-9.590e+02;SOR=0.565;VQSLOD=9.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,62:122:99:1652,0,1672 2 38298203 rs1056836 C G 1763.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.053;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=2.294;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=1.603;SB=-9.330e+02;SOR=0.507;VQSLOD=9.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,61:125:99:1792,0,1747 2 38526324 rs3816370 A T 353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.69;ReadPosRankSum=1.160;SB=-4.176e+01;SOR=1.179;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:8,12:20:99:382,0,223 2 38526547 rs3765052 G A 314.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.536;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=4.027;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.48;ReadPosRankSum=-0.312;SB=-2.302e+01;SOR=2.670;VQSLOD=5.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,11:14:49:343,0,49 2 38536626 rs2305243 T G 1259.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.943;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=0.360;SB=-5.790e+02;SOR=0.745;VQSLOD=8.16;culprit=FS GT:AD:DP:GQ:PL 0/1:45,49:94:99:1288,0,1137 2 38537626 rs2305245 A C 867.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.475;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=3.781;HaplotypeScore=4.0923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-0.113;SB=-1.930e+02;SOR=1.292;VQSLOD=7.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,31:68:99:896,0,970 2 38908875 rs138934357 G C 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-1.079;SB=0.00;SOR=0.473;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:201,0,272 2 38956947 rs2272445 A G 1841.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.22;SB=-8.320e+02;SOR=1.532;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1870,135,0 2 38957055 rs3097715 T C 565.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-4.276e+01;SOR=4.294;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:594,48,0 2 38958730 rs115985514 C T 101.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=12.175;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=1.831;SB=-5.600e+01;SOR=0.587;VQSLOD=3.93;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:130,0,217 2 38977371 rs3112183 C T 986.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.84;SB=-3.470e+02;SOR=1.911;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:75:1015,75,0 2 38977402 rs3134630 T C 678.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.32;SB=-1.563e+02;SOR=2.636;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:51:707,51,0 2 39006603 rs3112201 T G 3000.77 PASS AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.53;SB=-2.000e+03;SOR=0.869;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,109:109:99:3029,211,0 2 39025043 . G GA 197.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQ0=0;MQRankSum=-0.589;POSITIVE_TRAIN_SITE;QD=10.99;RPA=12,13;RU=A;ReadPosRankSum=-0.094;SB=0.00;SOR=1.493;STR;VQSLOD=3.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,12:18:79:235,0,79 2 39025555 rs1530853 G A 2728.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.66;SB=-1.386e+03;SOR=1.204;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2757,208,0 2 39025632 rs1530852 A G 1445.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SB=-4.390e+02;SOR=2.252;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1474,108,0 2 39030074 rs13029406 C T 2553.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;SB=-1.113e+03;SOR=1.609;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2582,196,0 2 39042639 rs3112138 G A 1343.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.77;SB=-1.991e+02;SOR=3.003;VQSLOD=7.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1372,108,0 2 39045885 rs10176932 C T 582.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-1.603e+02;SOR=2.419;VQSLOD=7.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:45:611,45,0 2 39050019 rs3112146 G T 770.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-2.301e+02;SOR=2.124;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:799,60,0 2 39050061 rs34582261 AT A 1819.73 PASS AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.88;RPA=3,2;RU=T;SB=-4.210e+02;SOR=2.409;STR;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1857,132,0 2 39050141 rs3770681 A C 2733.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-9.610e+02;SOR=1.721;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2762,202,0 2 39065729 rs17494315 C A 872.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.57;SB=-1.225e+02;SOR=3.611;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:69:901,69,0 2 39075356 rs11124651 A C 369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-4.076e+01;SOR=3.611;VQSLOD=7.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:398,30,0 2 39082344 rs7598922 T C 4288.77 PASS AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.01;SB=-2.554e+03;SOR=0.818;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,134:134:99:4317,310,0 2 39090696 rs3099999 T C 2171.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-7.850e+02;SOR=1.897;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:70:99:2200,163,0 2 39117117 rs7565111 G A 3260.77 PASS AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=-2.089e+03;SOR=0.786;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,111:111:99:3289,241,0 2 39158297 rs199921991 C G 1541.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.114;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=3.829;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.57;ReadPosRankSum=1.346;SB=-8.070e+02;SOR=1.115;VQSLOD=5.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,58:99:99:1570,0,977 2 39184964 rs10865145 A G 244.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.48;SB=-4.276e+01;SOR=3.258;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:273,24,0 2 39185048 rs422854 C T 1642.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.22;SB=-2.940e+02;SOR=3.080;VQSLOD=3.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1671,126,0 2 39187190 rs6755527 T C 3201.82 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.96;SB=-1.629e+03;SOR=0.883;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:3230,238,0 2 39187519 rs958412 A G 656.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.57;SB=-1.205e+02;SOR=2.948;VQSLOD=4.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:51:685,51,0 2 39198966 rs2305516 A G 1803.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.63;SB=-7.570e+02;SOR=1.802;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1832,132,0 2 39214821 rs2290445 A C 875.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.07;SB=-8.297e+01;SOR=4.091;VQSLOD=7.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:904,66,0 2 39224351 rs1454223 G T 876.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.14;SB=-7.697e+01;SOR=4.174;VQSLOD=6.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:905,69,0 2 39224615 . G GT 878.73 PASS AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.29;RPA=7,8;RU=T;SB=-3.190e+02;SOR=1.536;STR;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:35:90:916,90,0 2 39233500 rs7577088 G A 501.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.45;SB=-3.477e+01;SOR=4.047;VQSLOD=7.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:530,42,0 2 39262068 rs10153761 C T 1046.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.89;SB=-1.135e+02;SOR=3.912;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:87:1075,87,0 2 39283784 rs180918477 G C 143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-0.906;SB=0.00;SOR=0.693;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:172,0,174 2 39403006 rs17023372 G C 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=-0.179;SB=0.00;SOR=1.270;VQSLOD=10.04;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:241,0,133 2 39406572 rs7566123 C A 253.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.574;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.222;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=-0.844;SB=-1.410e+02;SOR=0.184;VQSLOD=9.52;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,12:25:99:282,0,402 2 39440727 rs10196407 G C 242.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=-0.317;SB=-1.290e+02;SOR=0.951;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:15,12:27:99:271,0,348 2 39452861 rs11124663 C T 890.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=0.495;SB=-3.280e+02;SOR=0.725;VQSLOD=8.55;culprit=FS GT:AD:DP:GQ:PL 0/1:45,34:79:99:919,0,1252 2 39479122 rs3770678 G C 93.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.81;ReadPosRankSum=-1.242;SB=0.00;SOR=0.269;VQSLOD=9.31;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:99:122,0,285 2 39494197 rs2302749 C T 345.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.520;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=4.175;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=-0.514;SB=-3.976e+01;SOR=0.084;VQSLOD=9.53;culprit=SOR GT:AD:DP:GQ:PL 0/1:21,13:34:99:374,0,745 2 39494469 rs10865149 C G 226.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.20;ReadPosRankSum=-0.313;SB=-3.100e+01;SOR=1.022;VQSLOD=10.47;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:15:99:255,0,169 2 39507417 rs3755176 T A 734.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-0.650;SB=-4.440e+02;SOR=0.765;VQSLOD=8.40;culprit=FS GT:AD:DP:GQ:PL 0/1:31,30:61:99:763,0,797 2 39514136 rs3755172 T C 209.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.155;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=6.593;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.77;ReadPosRankSum=-1.105;SB=-1.470e+02;SOR=0.120;VQSLOD=8.06;culprit=QD GT:AD:DP:GQ:PL 0/1:17,10:27:99:238,0,456 2 39514204 rs3755171 G C 108.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=0.930;SB=0.00;SOR=0.412;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:137,0,205 2 39526842 rs2111382 A C 1959.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-6.890e+02;SOR=2.056;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1988,144,0 2 39542658 rs5830562 AT A 140.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.38;RPA=12,11;RU=T;ReadPosRankSum=-0.688;SB=0.00;SOR=1.112;STR;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:18:99:178,0,120 2 39553271 rs3815594 A G 976.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.998;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=2.052;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.921;SB=-4.120e+02;SOR=0.430;VQSLOD=9.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,38:82:99:1005,0,1228 2 39558928 rs6760382 G A 1237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.267;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-1.180;SB=-6.710e+02;SOR=0.775;VQSLOD=7.92;culprit=FS GT:AD:DP:GQ:PL 0/1:49,49:98:99:1266,0,1219 2 39564620 rs1125839 C A 369.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.597;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.342;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.73;ReadPosRankSum=-1.498;SB=-1.500e+02;SOR=1.078;VQSLOD=6.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,17:38:99:398,0,580 2 39570427 rs3732053 T C 530.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.616;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.30;ReadPosRankSum=-0.219;SB=0.00;SOR=0.906;VQSLOD=10.39;culprit=FS GT:AD:DP:GQ:PL 0/1:13,16:29:99:559,0,412 2 39583446 rs8545 A G 279.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.982;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.176;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.23;ReadPosRankSum=1.028;SB=-1.550e+02;SOR=1.044;VQSLOD=6.35;culprit=QD GT:AD:DP:GQ:PL 0/1:21,13:34:99:308,0,566 2 39944055 rs2540229 G A 114.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=-1.021;SB=0.00;SOR=0.693;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:143,0,215 2 39982698 rs6544242 C G 270.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.08;ReadPosRankSum=0.493;SB=0.00;SOR=2.303;VQSLOD=7.84;culprit=FS GT:AD:DP:GQ:PL 0/1:2,8:10:52:299,0,52 2 39982898 rs67848228 G GAGTAT 325.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=-3.024;SB=0.00;SOR=0.307;VQSLOD=8.83;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,5:14:99:363,0,683 2 39988703 rs3732122 T C 252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-0.454;SB=0.00;SOR=0.693;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:281,0,328 2 39993167 rs4670959 T C 889.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=0.797;SB=-4.390e+02;SOR=0.601;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 0/1:32,35:67:99:918,0,886 2 39995885 rs7590912 C T 478.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.812;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.561;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=-1.612;SB=-2.480e+02;SOR=0.223;VQSLOD=10.14;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,17:30:99:507,0,397 2 39995908 rs13400213 A G 364.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.248;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=9.034;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=0.173;SB=-9.100e+01;SOR=1.919;VQSLOD=5.62;culprit=FS GT:AD:DP:GQ:PL 0/1:12,12:24:99:393,0,365 2 40366301 rs2072532 G A 1075.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-3.480e+02;SOR=2.049;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:81:1104,81,0 2 40392313 rs434725 G C 511.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.12;SB=-7.697e+01;SOR=3.126;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:540,39,0 2 40402065 . C T 284.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.047;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.63;ReadPosRankSum=0.369;SB=-1.160e+02;SOR=0.627;VQSLOD=7.60;culprit=QD GT:AD:DP:GQ:PL 0/1:20,13:33:99:313,0,581 2 40564647 rs11893826 G A 483.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.151;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=-0.230;SB=-1.380e+02;SOR=0.856;VQSLOD=10.43;culprit=FS GT:AD:DP:GQ:PL 0/1:13,19:32:99:512,0,372 2 40564655 rs11893746 C T 528.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.241;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=-0.623;SB=-1.270e+02;SOR=1.047;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:12,20:32:99:557,0,302 2 40655563 . CCACACACACA CCACACA,C 4480.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.57;RPA=15,13,10;RU=CA;SB=-1.107e+03;SOR=1.938;STR;VQSLOD=4.53;culprit=FS GT:AD:DP:GQ:PL 1/2:0,25,28:56:99:4518,2191,2038,1372,0,1757 2 41384390 rs2113376 G A 378.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-2.371e+02;SOR=0.693;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:407,30,0 2 42047517 rs12151414 G C 858.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-3.200e+02;SOR=1.942;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:63:887,63,0 2 42165754 rs10192292 C T 801.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.927;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.828;HaplotypeScore=2.4964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.11;ReadPosRankSum=-0.908;SB=-5.080e+02;SOR=0.539;VQSLOD=8.88;culprit=QD GT:AD:DP:GQ:PL 0/1:53,35:88:99:830,0,1346 2 42165961 rs7590930 T A 354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.477;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.160;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=-1.312;SB=-9.732e-01;SOR=2.303;VQSLOD=5.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,12:26:99:383,0,438 2 42275819 rs11897440 T C 244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=5.969;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.44;ReadPosRankSum=-1.754;SB=-7.500e+01;SOR=1.746;VQSLOD=5.25;culprit=QD GT:AD:DP:GQ:PL 0/1:18,11:29:99:273,0,436 2 42284884 rs1044305 T C 343.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.775;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=1.264;SB=-1.060e+02;SOR=0.336;VQSLOD=9.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,14:35:99:372,0,626 2 42396722 rs7233 A G 856.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-4.120e+02;SOR=1.460;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:63:885,63,0 2 42492238 . C CT 182.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.62;RPA=10,11;RU=T;ReadPosRankSum=-0.573;SB=0.00;SOR=0.793;STR;VQSLOD=8.32;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:22:99:220,0,173 2 42510018 rs6736913 A G 3264.77 PASS AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3650;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-8.320e+02;SOR=1.835;VQSLOD=5.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,110:111:99:3293,247,0 2 42515388 rs10202624 A G 1242.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;SB=-6.000e+02;SOR=1.347;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:90:1271,90,0 2 42560975 rs7572231 A G 979.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.258;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.084;HaplotypeScore=3.7749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=-0.911;SB=-5.420e+02;SOR=0.973;VQSLOD=6.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,39:59:99:1008,0,483 2 42719847 rs371536042 T TG 2154.73 PASS AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.89;RPA=3,4;RU=G;SB=-6.120e+02;SOR=2.024;STR;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:56:99:2192,166,0 2 42719860 . G GC 2706.73 PASS AC=2;AF=1.00;AN=2;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.22;RPA=1,2;RU=C;SB=-7.480e+02;SOR=1.981;STR;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:62:99:2744,184,0 2 42922888 rs66547039 AT A 265.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655;DB;DP=27;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.84;RPA=13,12;RU=T;ReadPosRankSum=-1.049;SB=-5.600e+01;SOR=1.449;STR;VQSLOD=6.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,15:27:99:303,0,261 2 42931217 rs2304658 A C 243.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=2.339;SB=0.00;SOR=0.976;VQSLOD=9.49;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:6,8:14:99:272,0,152 2 42935961 rs4953577 C T 378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=-0.170;SB=-1.320e+02;SOR=0.990;VQSLOD=10.08;culprit=FS GT:AD:DP:GQ:PL 0/1:16,16:32:99:407,0,507 2 42935979 rs4953578 C T 388.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.110;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=0.293;SB=-2.280e+02;SOR=0.732;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:20,18:38:99:417,0,609 2 42990336 rs1992286 T G 1027.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.342;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=7.589;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-0.153;SB=-5.610e+02;SOR=0.461;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 0/1:41,36:77:99:1056,0,1123 2 42996709 . ATGTGTGTG A 2043.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;DP=29;ExcessHet=3.0103;FS=3.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.48;RPA=18,14;RU=TG;ReadPosRankSum=1.485;SB=-2.910e+02;SOR=2.584;STR;VQSLOD=5.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,23:29:99:2081,0,165 2 42996759 rs66779554 AAGAG A 1606.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.57;RPA=8,6;RU=AG;ReadPosRankSum=2.161;SB=-4.300e+02;SOR=1.244;STR;VQSLOD=4.38;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,28:37:99:1644,0,474 2 42997384 rs368790811 C T 518.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=4.813;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.21;ReadPosRankSum=0.399;SB=-9.500e+01;SOR=2.200;VQSLOD=4.63;culprit=FS GT:AD:DP:GQ:PL 0/1:8,19:27:99:547,0,208 2 43010130 rs34837864 AC A 731.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.583;DB;DP=39;ExcessHet=3.0103;FS=2.814;MLEAC=1;MLEAF=0.500;MQ=60.83;MQ0=0;MQRankSum=1.595;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=-0.312;SB=-2.840e+02;SOR=0.655;VQSLOD=0.318;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,22:39:99:769,0,660 2 43011169 rs4953660 G T 630.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.959;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=-0.737;SB=-1.470e+02;SOR=0.804;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:22,24:46:99:659,0,628 2 43015612 rs3816181 G T 658.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.265;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.430;HaplotypeScore=2.7328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=0.876;SB=-1.690e+02;SOR=0.374;VQSLOD=9.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,25:54:99:687,0,801 2 43015719 rs3816183 T C 1220.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.685;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=1.173;SB=-6.940e+02;SOR=0.659;VQSLOD=8.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:73,49:122:99:1249,0,1762 2 43015757 rs3816184 G A 1129.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.696;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=-1.457;SB=-6.450e+02;SOR=0.634;VQSLOD=8.93;culprit=FS GT:AD:DP:GQ:PL 0/1:66,49:115:99:1158,0,1691 2 43015902 rs3816185 G A 269.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=-2.464;SB=0.00;SOR=0.941;VQSLOD=9.05;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,9:16:99:298,0,231 2 43019730 rs2304656 A G 531.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=2.483;HaplotypeScore=1.8332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=0.419;SB=-2.801e+01;SOR=1.708;VQSLOD=5.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,17:30:99:560,0,348 2 43019808 rs4952937 C A 158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-0.792;SB=0.00;SOR=0.859;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:187,0,168 2 43024676 rs4953664 C A 60.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.288;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.05;ReadPosRankSum=1.241;SB=-5.300e+01;SOR=0.330;VQSLOD=9.40;culprit=QD GT:AD:DP:GQ:PL 0/1:11,4:15:89:89,0,326 2 43025207 rs4952939 T C 381.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=0.000;SB=-1.440e+02;SOR=0.892;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:15,17:32:99:410,0,319 2 43453086 rs35064085 G A 211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=7.160;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.29;ReadPosRankSum=1.481;SB=-1.185e+02;SOR=0.031;VQSLOD=8.27;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:240,0,189 2 43571197 rs187003014 C G 1087.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.637;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=2.380;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=0.552;SB=-2.260e+02;SOR=1.210;VQSLOD=7.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,35:70:99:1116,0,941 2 43625078 rs7605661 T C 542.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.103;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.571;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-0.444;SB=-1.610e+02;SOR=0.334;VQSLOD=10.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,21:41:99:571,0,618 2 43625184 rs33979934 T A 1056.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.047;SB=-6.330e+02;SOR=0.573;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:38,44:82:99:1085,0,1001 2 43657510 rs35340152 T A 459.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.608;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.68;ReadPosRankSum=0.290;SB=-6.000e+01;SOR=0.693;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:10,16:26:99:488,0,262 2 43725965 rs35419456 C A 791.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.516;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=1.956;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=0.707;SB=-3.120e+02;SOR=1.025;VQSLOD=7.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,33:81:99:820,0,1337 2 43754992 rs1491508 C T 441.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.779;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=1.290;SB=-1.180e+02;SOR=1.562;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 0/1:26,18:44:99:470,0,617 2 43787576 rs4337518 G A 130.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.582;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.26;ReadPosRankSum=-0.704;SB=-2.302e+01;SOR=0.892;VQSLOD=9.52;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:159,0,336 2 43793725 rs1158411 G A 690.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.479;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.052;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-0.073;SB=-3.000e+02;SOR=0.885;VQSLOD=7.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,24:52:99:719,0,812 2 43797619 rs17031056 C T 598.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.848;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.04;ReadPosRankSum=-0.645;SB=-3.920e+02;SOR=0.613;VQSLOD=8.78;culprit=QD GT:AD:DP:GQ:PL 0/1:56,29:85:99:627,0,1462 2 43797710 rs11904510 G A 458.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.712;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=-0.540;SB=-1.220e+02;SOR=0.395;VQSLOD=9.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,19:45:99:487,0,792 2 43798792 rs11884742 G A 738.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=4.596;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-0.653;SB=-2.640e+02;SOR=1.536;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 0/1:18,28:46:99:767,0,426 2 43800174 rs11898207 A G 923.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.682;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.11;ReadPosRankSum=0.166;SB=-3.070e+02;SOR=0.892;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:19,32:51:99:952,0,402 2 43801712 rs11899823 A G 1283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.348;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.913;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=-0.205;SB=-8.750e+02;SOR=0.604;VQSLOD=9.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,51:77:99:1312,0,680 2 43802261 rs970175 C A 601.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SB=-4.076e+01;SOR=4.407;VQSLOD=7.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:48:630,48,0 2 43804229 rs13021894 T C 1559.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.033;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=3.653;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=1.068;SB=-6.630e+02;SOR=1.059;VQSLOD=7.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,57:106:99:1588,0,1334 2 43817950 rs35899859 CT C 742.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;DB;DP=59;ExcessHet=3.0103;FS=3.765;MLEAC=1;MLEAF=0.500;MQ=60.18;MQ0=0;MQRankSum=0.919;POSITIVE_TRAIN_SITE;QD=13.03;RPA=7,6;RU=T;ReadPosRankSum=-0.820;SB=-3.410e+02;SOR=0.337;STR;VQSLOD=0.169;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,32:59:99:780,0,625 2 43871983 rs12105773 T C 1896.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.61;SB=-6.530e+02;SOR=2.080;VQSLOD=8.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1925,141,0 2 43872032 rs4450661 A G 362.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.296;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.775;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=-0.264;SB=-5.150e-01;SOR=2.338;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 0/1:19,12:31:99:391,0,582 2 43902511 rs755862 G C 865.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.900;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=8.311;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=-0.396;SB=-1.610e+02;SOR=1.730;VQSLOD=5.10;culprit=FS GT:AD:DP:GQ:PL 0/1:58,33:91:99:894,0,1633 2 43903066 rs3828297 A G 2567.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-1.449e+03;SOR=0.766;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2596,193,0 2 43903354 rs4952675 T C 1303.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.896;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=-0.382;SB=-7.500e+02;SOR=0.744;VQSLOD=8.42;culprit=FS GT:AD:DP:GQ:PL 0/1:63,51:114:99:1332,0,1566 2 43903483 rs4952995 T C 411.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.644;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=8.012;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=-0.754;SB=-4.600e+01;SOR=2.336;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 0/1:27,16:43:99:440,0,711 2 43905898 . G GAGGTGGAGGTGC 576.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.884;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.17;MQ0=0;MQRankSum=1.732;QD=14.42;ReadPosRankSum=-0.497;SB=-1.410e+02;SOR=0.693;VQSLOD=2.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,5:10:99:614,0,702 2 43924171 rs10211617 T A 153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=1.260;SB=0.00;SOR=0.693;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:182,0,198 2 43926943 rs7606783 T A 1141.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.817;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=3.832;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=-0.629;SB=-6.020e+02;SOR=0.393;VQSLOD=8.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,44:106:99:1170,0,1768 2 43931176 rs4953002 T C 718.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.493;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=4.748;HaplotypeScore=14.8167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=0.911;SB=-5.040e+02;SOR=0.319;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:39,31:72:99:747,0,1005 2 43931321 rs4953003 G A 231.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.564;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-2.005;SB=-3.200e+01;SOR=0.693;VQSLOD=9.83;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:10,10:20:99:260,0,275 2 43937500 rs17414174 T C 634.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.242;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.499;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=2.319;SB=-3.470e+02;SOR=0.358;VQSLOD=9.64;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:26,22:48:99:663,0,690 2 43939525 rs13028613 A G 1120.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.715;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=1.924;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=0.926;SB=-6.800e+02;SOR=0.941;VQSLOD=7.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,43:73:99:1149,0,659 2 43947944 rs17031344 A G 225.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.52;ReadPosRankSum=1.602;SB=-4.276e+01;SOR=0.693;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 0/1:3,8:11:84:254,0,84 2 43953664 rs7574334 A G 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.541;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-1.171;SB=-4.376e+01;SOR=0.223;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:11,12:23:99:375,0,358 2 43956667 rs61046487 G A 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-0.275;SB=0.00;SOR=0.836;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:203,0,198 2 43991357 rs7565517 A C 316.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.194;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-0.881;SB=-3.600e+01;SOR=0.793;VQSLOD=10.39;culprit=FS GT:AD:DP:GQ:PL 0/1:10,11:21:99:345,0,283 2 44055446 rs4557032 G A 101.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=0.175;SB=-3.200e+01;SOR=0.527;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:130,0,178 2 44066174 rs3806471 T G 571.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.657;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.441;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=0.798;SB=-1.700e+02;SOR=1.051;VQSLOD=6.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,19:34:99:600,0,404 2 44071625 rs4148209 C A 3365.77 PASS AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=-1.948e+03;SOR=0.786;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,111:111:99:3394,253,0 2 44071639 rs4148210 C T 1313.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.870;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=3.444;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=1.479;SB=-7.180e+02;SOR=0.605;VQSLOD=7.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:65,48:113:99:1342,0,1668 2 44071743 rs4148211 A G 953.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.019;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.962;HaplotypeScore=2.8267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.271;SB=-3.790e+02;SOR=0.527;VQSLOD=10.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,35:75:99:982,0,1068 2 44071833 rs4148212 A C 842.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.71;SB=-8.197e+01;SOR=4.174;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:66:871,66,0 2 44071852 rs4148213 G C 276.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.294;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.45;ReadPosRankSum=0.687;SB=0.00;SOR=1.112;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:305,0,162 2 44079004 rs4148214 T C 1497.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.04;SB=-2.740e+02;SOR=3.160;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1526,111,0 2 44101214 rs10709506 CA C 1294.73 PASS AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.12;SB=-4.776e+01;SOR=5.353;VQSLOD=5.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:87:1332,87,0 2 44101430 rs4952689 T G 93.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.115;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.70;ReadPosRankSum=0.567;SB=0.00;SOR=0.188;VQSLOD=9.40;culprit=QD GT:AD:DP:GQ:PL 0/1:10,4:14:99:122,0,351 2 44101538 rs28517482 C T 1873.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=33.9792;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.83;SB=-9.730e+02;SOR=1.162;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:1902,138,0 2 44101649 . G GCC,GC 1537.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.43;RPA=6,8,7;RU=C;SB=-4.970e+02;SOR=1.981;STR;VQSLOD=4.52;culprit=FS GT:AD:DP:GQ:PL 1/2:0,17,23:45:99:1575,762,690,610,0,490 2 44104925 rs6544718 T C 5614.77 PASS AC=2;AF=1.00;AN=2;DB;DP=179;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-3.338e+03;SOR=0.750;VQSLOD=6.64;culprit=DP GT:AD:DP:GQ:PL 1/1:0,179:179:99:5643,409,0 2 44116836 rs2955280 C T 2078.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-1.016e+03;SOR=1.244;VQSLOD=5.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2107,160,0 2 44117046 rs2955281 A C 278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.917;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=0.983;SB=0.00;SOR=0.693;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:307,0,342 2 44117308 rs2954808 A G 638.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.910;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=-1.621;SB=-1.570e+02;SOR=0.768;VQSLOD=8.55;culprit=FS GT:AD:DP:GQ:PL 0/1:39,24:63:99:667,0,1035 2 44123672 rs3839036 TC T 1355.73 PASS AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.34;SB=-1.375e+02;SOR=3.912;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:90:1393,90,0 2 44145374 rs7568481 G T 2190.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-1.156e+03;SOR=0.787;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2219,169,0 2 44152180 rs4952694 G A 1507.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.16;SB=-7.430e+02;SOR=1.157;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1536,114,0 2 44152406 rs4953039 G T 395.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=0.00;SOR=5.136;VQSLOD=8.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:424,36,0 2 44172444 rs28394191 A C 2928.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9298;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-1.598e+03;SOR=1.132;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:2957,214,0 2 44173422 rs7594526 T G 973.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;SB=-1.951e+02;SOR=2.985;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:75:1002,75,0 2 44858687 rs10191477 T C 1033.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.516;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=1.183;SB=-3.970e+02;SOR=0.728;VQSLOD=8.42;culprit=FS GT:AD:DP:GQ:PL 0/1:42,40:83:99:1062,0,1161 2 44942331 rs35173334 CA C 79.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407;DB;DP=17;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.98;RPA=20,19;RU=A;ReadPosRankSum=-1.749;SB=-3.597e+01;SOR=0.105;STR;VQSLOD=6.50;culprit=QD GT:AD:DP:GQ:PL 0/1:7,9:17:99:117,0,102 2 44942384 rs343957 C G 780.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.03;SB=-3.960e+02;SOR=1.536;VQSLOD=4.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:31:60:809,60,0 2 44981119 rs3738980 T G 766.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.784;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=1.043;SB=-3.050e+02;SOR=0.793;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:28,30:58:99:795,0,653 2 44993487 rs11679997 C T 276.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.928;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.77;ReadPosRankSum=-0.795;SB=-1.090e+02;SOR=0.661;VQSLOD=9.23;culprit=QD GT:AD:DP:GQ:PL 0/1:34,14:48:99:305,0,886 2 45170153 rs4953152 G A 498.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.156;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.78;ReadPosRankSum=-0.980;SB=-3.677e+01;SOR=0.582;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:8,16:24:99:527,0,218 2 45171842 rs338074 A G 1856.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.31;SB=-1.100e+03;SOR=0.949;VQSLOD=4.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:1885,135,0 2 45619987 rs3731945 T A 584.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.533;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=0.323;SB=-1.790e+02;SOR=0.699;VQSLOD=9.29;culprit=FS GT:AD:DP:GQ:PL 0/1:30,23:53:99:613,0,836 2 45620055 rs3731946 G A 1191.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.610;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-0.250;SB=-6.560e+02;SOR=0.677;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:45,47:92:99:1220,0,1268 2 45640374 rs3755073 C A 247.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.322;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.76;ReadPosRankSum=0.081;SB=-1.420e+02;SOR=0.434;VQSLOD=8.80;culprit=QD GT:AD:DP:GQ:PL 0/1:31,12:44:99:276,0,789 2 45645512 rs2276655 C T 934.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=5.464;HaplotypeScore=1.8737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=0.734;SB=-4.370e+02;SOR=1.271;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 0/1:49,40:89:99:963,0,1258 2 45646824 rs3213787 A G 1022.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.920;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=-0.979;SB=-4.200e+02;SOR=0.657;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:34,39:73:99:1051,0,835 2 45715556 . 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G GA 138.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.55;RPA=6,7;RU=A;ReadPosRankSum=-0.029;SB=0.00;SOR=0.223;STR;VQSLOD=7.78;culprit=QD GT:AD:DP:GQ:PL 0/1:17,8:28:99:176,0,430 2 45879610 rs637909 A G 897.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.95;SB=-1.115e+02;SOR=3.528;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:926,69,0 2 46203796 rs2278786 G A 1083.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.296;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.874;SB=-4.070e+02;SOR=0.626;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:30,42:72:99:1112,0,730 2 46206071 rs10171157 G A 1157.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.47;SB=-4.890e+02;SOR=1.493;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:87:1186,87,0 2 46206090 rs10194507 A T 787.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.865;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=0.098;SB=-3.110e+02;SOR=1.609;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 0/1:14,31:45:99:816,0,366 2 46207197 rs61763807 A G 515.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-1.643e+02;SOR=2.049;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:39:544,39,0 2 46207722 rs61763808 A G 461.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.609;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.720;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=-1.254;SB=-1.470e+02;SOR=0.407;VQSLOD=9.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,16:28:99:490,0,387 2 46211645 rs60465117 A C 935.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.249;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=1.215;SB=-4.380e+02;SOR=0.639;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 0/1:50,35:85:99:964,0,1394 2 46211935 rs2595213 T C 670.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.54;SB=-3.777e+01;SOR=4.615;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:57:699,57,0 2 46228703 rs41308186 G C 633.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.553;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-0.764;SB=-2.380e+02;SOR=0.818;VQSLOD=9.21;culprit=FS GT:AD:DP:GQ:PL 0/1:26,25:51:99:662,0,740 2 46232042 rs2255094 A C 110.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.576;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=1.542;SB=0.00;SOR=0.693;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:139,0,163 2 46313481 rs1143691 C T 1946.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.408;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.95;ReadPosRankSum=-1.546;SB=-8.630e+02;SOR=0.628;VQSLOD=7.57;culprit=FS GT:AD:DP:GQ:PL 1/1:1,64:65:99:1975,114,0 2 46583235 rs6743991 C A 401.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=-7.097e+01;SOR=2.670;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:430,33,0 2 46583277 . C CCG 411.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQ0=0;MQRankSum=1.083;QD=17.16;ReadPosRankSum=1.300;SB=-7.900e+01;SOR=1.148;VQSLOD=1.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,12:24:99:449,0,283 2 46583279 . C T 319.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.1211;MLEAC=1;MLEAF=0.500;MQ=59.27;MQ0=0;MQRankSum=1.044;QD=13.90;ReadPosRankSum=1.509;SB=-6.400e+01;SOR=1.022;VQSLOD=2.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,11:23:99:348,0,343 2 46583281 rs75984373 C T 496.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=4.682;HaplotypeScore=15.2164;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=1.344;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.11;ReadPosRankSum=-0.660;SB=-6.400e+01;SOR=1.981;VQSLOD=0.131;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,16:26:99:525,0,224 2 46583593 rs2278753 G A 195.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-1.311;SB=-6.100e+01;SOR=1.140;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:224,0,275 2 46584059 rs34136947 T G 333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=1.621;SB=-3.500e+01;SOR=0.551;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:14,12:26:99:362,0,437 2 46602722 rs7567582 T C 225.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.104;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=1.268;SB=-1.765e+00;SOR=1.071;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:13,8:21:99:254,0,455 2 46603671 rs7557402 C G 1139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.3333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=0.346;SB=-6.420e+02;SOR=0.781;VQSLOD=7.79;culprit=FS GT:AD:DP:GQ:PL 0/1:63,45:109:99:1168,0,1697 2 46605659 rs7571218 A G 148.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=-2.559;SB=0.00;SOR=0.569;VQSLOD=9.53;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,6:13:99:177,0,240 2 46605954 rs7598371 G C 581.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.031;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=4.170;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=-0.398;SB=-2.210e+02;SOR=0.161;VQSLOD=9.74;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,24:37:99:610,0,426 2 46608542 rs13006131 C G 471.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.565;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.87;ReadPosRankSum=-0.082;SB=-1.765e+00;SOR=2.133;VQSLOD=6.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,14:25:99:500,0,335 2 46611471 rs56768253 G A 90.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=1.465;SB=0.00;SOR=1.085;VQSLOD=8.67;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:119,0,127 2 46706618 rs3814047 C G 262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.90;ReadPosRankSum=0.000;SB=0.00;SOR=1.445;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:99:291,0,119 2 46707851 rs61995902 G A 470.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.655;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=2.563;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.73;ReadPosRankSum=-1.730;SB=-9.200e+01;SOR=1.189;VQSLOD=5.53;culprit=QD GT:AD:DP:GQ:PL 0/1:50,20:70:99:499,0,1339 2 46707886 rs12612916 G A 125.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.263;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.92;ReadPosRankSum=3.307;SB=-3.500e+01;SOR=0.866;VQSLOD=7.04;culprit=QD GT:AD:DP:GQ:PL 0/1:34,9:43:99:154,0,1053 2 46771134 rs6714484 G C 1417.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3808;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=-7.597e+01;SOR=5.136;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1446,111,0 2 46799852 rs1451153 G T 1059.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.216;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=1.625;SB=-5.250e+02;SOR=0.722;VQSLOD=8.63;culprit=FS GT:AD:DP:GQ:PL 0/1:35,40:75:99:1088,0,809 2 46807991 rs2276554 T C 524.77 PASS 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AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;SB=-1.185e+02;SOR=1.981;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:458,36,0 2 47044277 rs2289930 C T 981.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.95;SB=-1.523e+02;SOR=3.098;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:75:1010,75,0 2 47045267 rs2289931 G A 1229.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.36;SB=-3.210e+02;SOR=2.554;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:93:1258,93,0 2 47045309 rs2289933 C T 1822.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-6.620e+02;SOR=1.863;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1851,135,0 2 47049038 rs2278714 G T 223.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=2.205;SB=-6.500e+01;SOR=0.877;VQSLOD=7.78;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:11,9:20:99:252,0,304 2 47049409 rs2278715 C T 2004.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-6.050e+02;SOR=2.448;VQSLOD=7.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2033,156,0 2 47049453 rs1053952 A G 1159.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.11;SB=-1.911e+02;SOR=3.258;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:90:1188,90,0 2 47081092 rs11687883 C T 1358.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.862;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=8.671;HaplotypeScore=3.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=0.235;SB=-7.130e+02;SOR=0.236;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 0/1:47,55:102:99:1387,0,1205 2 47081196 rs61507430 C G 365.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.301;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.52;ReadPosRankSum=1.639;SB=-3.876e+01;SOR=0.693;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 0/1:5,12:17:99:394,0,134 2 47083032 rs28711956 G A 475.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.117;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=42.4608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.12;ReadPosRankSum=0.706;SB=-1.940e+02;SOR=0.776;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 0/1:26,21:48:99:504,0,689 2 47083039 rs376931136 TATA T 687.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.985;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQ0=0;MQRankSum=1.944;QD=11.66;ReadPosRankSum=1.885;SB=-2.120e+02;SOR=0.596;VQSLOD=1.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,21:60:99:725,0,1423 2 47083044 rs1079 A T 1625.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.093;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=71.4532;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;MQRankSum=0.425;POSITIVE_TRAIN_SITE;QD=26.65;ReadPosRankSum=1.691;SB=-6.711e+02;SOR=1.692;VQSLOD=2.21;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:4,57:61:51:1654,51,0 2 47085398 rs2278711 C T 328.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.603;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-0.850;SB=0.00;SOR=0.495;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:14,11:25:99:357,0,438 2 47132834 . TAAA TAAAA,T 737.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.712;DP=49;ExcessHet=3.0103;FS=2.556;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.49;RPA=20,21,17;RU=A;ReadPosRankSum=0.429;SB=-1.920e+02;SOR=0.269;STR;VQSLOD=7.53;culprit=SOR GT:AD:DP:GQ:PL 1/2:4,12,20:49:99:775,595,761,192,0,600 2 47132856 rs55834277 G A 610.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.684;HaplotypeScore=4.5358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.90;ReadPosRankSum=-0.913;SB=-1.871e+02;SOR=0.330;VQSLOD=8.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,24:41:99:639,0,460 2 47133055 rs11890177 T C 727.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.168;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=7.419;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.22;ReadPosRankSum=0.877;SB=-5.600e+01;SOR=2.409;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 0/1:14,22:36:99:756,0,352 2 47134904 rs2289928 G A 459.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.513;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.38;ReadPosRankSum=0.550;SB=-1.540e+02;SOR=0.784;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 0/1:29,20:49:99:488,0,823 2 47135246 rs2289927 A G 328.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.560;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=0.879;SB=-2.801e+01;SOR=1.981;VQSLOD=6.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,10:17:99:357,0,158 2 47136381 rs115468082 G C 1495.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=0.901;SB=-8.160e+02;SOR=0.719;VQSLOD=8.60;culprit=FS GT:AD:DP:GQ:PL 0/1:44,57:101:99:1524,0,1067 2 47144532 rs6715620 T C 382.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.023;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.769;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-1.001;SB=-3.000e+02;SOR=0.242;VQSLOD=9.71;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,18:26:99:411,0,227 2 47168597 rs140303915 C A 121.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.16;ReadPosRankSum=-1.208;SB=-3.301e+01;SOR=0.260;VQSLOD=9.28;culprit=QD GT:AD:DP:GQ:PL 0/1:11,6:17:99:150,0,387 2 47169003 rs6755303 C T 43.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.98;ReadPosRankSum=-0.285;SB=-1.765e+00;SOR=0.693;VQSLOD=8.78;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:72:72,0,255 2 47177617 rs61738825 C T 988.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.967;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=0.420;SB=-6.370e+02;SOR=0.615;VQSLOD=8.95;culprit=FS GT:AD:DP:GQ:PL 0/1:53,44:97:99:1017,0,1370 2 47178787 rs116687628 C T 466.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.316;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=8.720;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=0.038;SB=-2.657e-01;SOR=2.876;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 0/1:25,17:43:99:495,0,750 2 47179063 rs28379847 C T 454.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.684;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-0.478;SB=-3.976e+01;SOR=0.136;VQSLOD=9.36;culprit=SOR GT:AD:DP:GQ:PL 0/1:20,16:36:99:483,0,719 2 47202275 rs74362086 C T 1721.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.125;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=0.492;SB=-9.600e+02;SOR=0.732;VQSLOD=8.30;culprit=FS GT:AD:DP:GQ:PL 0/1:76,71:147:99:1750,0,2007 2 47238254 rs17036060 G A 567.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.901;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=1.404;SB=0.00;SOR=0.598;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:20,18:38:99:596,0,701 2 47250819 rs12988535 A G 1560.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.21;SB=-3.300e+02;SOR=3.033;VQSLOD=7.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1589,117,0 2 47251555 rs72872958 G T 1312.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.93;SB=-8.510e+02;SOR=0.735;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1341,99,0 2 47251634 rs6713052 T C 1087.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.63;SB=-3.700e+02;SOR=1.863;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:81:1116,81,0 2 47273581 rs149412946 G C 1054.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.450;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=1.691;HaplotypeScore=3.7427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=-0.366;SB=-6.690e+02;SOR=0.476;VQSLOD=9.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,44:95:99:1083,0,1188 2 47273732 rs7593339 G A 225.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=-0.140;SB=-8.097e+01;SOR=0.473;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:2,8:10:54:254,0,54 2 47277207 rs3816066 C A 2663.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.412;DB;DP=219;Dels=0.00;ExcessHet=3.0103;FS=5.590;HaplotypeScore=3.5088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=0.352;SB=-1.379e+03;SOR=1.058;VQSLOD=5.37;culprit=DP GT:AD:DP:GQ:PL 0/1:116,102:219:99:2692,0,2939 2 47277208 rs3816065 A G 2685.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=12.339;DB;DP=219;Dels=0.00;ExcessHet=3.0103;FS=5.644;HaplotypeScore=3.5088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.217;SB=-1.458e+03;SOR=1.125;VQSLOD=5.22;culprit=DP GT:AD:DP:GQ:PL 0/1:114,103:219:99:2714,0,2831 2 47287594 rs2570514 T G 146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.705;SB=0.00;SOR=0.551;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:175,0,202 2 47287966 rs142959785 G A 511.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.360;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.443;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=0.551;SB=-3.150e+02;SOR=0.368;VQSLOD=9.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,20:54:99:540,0,839 2 47301029 rs3739099 A G 710.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.218;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.77;ReadPosRankSum=1.030;SB=-3.500e+01;SOR=0.798;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:19,21:40:99:739,0,550 2 47314048 rs2280647 T C 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=0.763;SB=0.00;SOR=0.569;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:14:99:203,0,231 2 47314052 rs1474394 T C 547.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.53;SB=0.00;SOR=5.421;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:576,42,0 2 47348347 rs1880583 C T 2394.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-1.516e+03;SOR=0.743;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2423,175,0 2 47357458 rs58184321 A G 1240.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.53;SB=-2.471e+02;SOR=2.774;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:93:1269,93,0 2 47380203 rs815809 T C 1851.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.06;SB=-1.063e+03;SOR=1.112;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:1880,141,0 2 47382214 rs815806 C G 1698.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-5.930e+02;SOR=1.981;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1727,126,0 2 47601106 rs1126497 T C 3758.77 PASS AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.07;SB=-2.314e+03;SOR=0.742;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,125:125:99:3787,283,0 2 47612224 rs7584256 C T 95.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.63;ReadPosRankSum=1.058;SB=-2.601e+01;SOR=0.693;VQSLOD=9.40;culprit=QD GT:AD:DP:GQ:PL 0/1:12,5:17:99:124,0,339 2 47613699 rs62139669 T C 291.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.375;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=0.551;SB=-6.800e+01;SOR=0.904;VQSLOD=9.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,11:24:99:320,0,355 2 47630550 MMR_c.211+9C>G C G 1127.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.92;SB=-4.000e+02;SOR=1.923;VQSLOD=6.64;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,39:39:84:1156,84,0 2 47630639 MMR_c.211+98T>C T C 332.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=0.00;SOR=4.804;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:361,30,0 2 47641559 . TAA T 269.52 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;DP=41;ExcessHet=3.0103;FS=4.761;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=1.561;POSITIVE_TRAIN_SITE;QD=12.25;RPA=27,25;RU=A;ReadPosRankSum=0.565;SB=-3.997e+01;SOR=2.049;STR;VQSLOD=0.277;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,15:41:7:306,0,7 2 47690404 rs3771278 T C 128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.176;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.44;ReadPosRankSum=0.371;SB=-6.700e+01;SOR=0.269;VQSLOD=8.71;culprit=QD GT:AD:DP:GQ:PL 0/1:14,6:20:99:157,0,400 2 47690408 rs3771279 A G 126.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.539;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.67;ReadPosRankSum=0.044;SB=-6.200e+01;SOR=0.160;VQSLOD=8.50;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:155,0,395 2 47690411 rs3771280 T C 127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.341;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=6.107;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.10;ReadPosRankSum=-0.609;SB=-7.100e+01;SOR=0.074;VQSLOD=9.10;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:156,0,388 2 47693706 MMR_c.1511-91G>T G T 419.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.922;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-1.019;SB=-1.040e+02;SOR=0.502;VQSLOD=10.24;culprit=FS GT:AD:DP:GQ:PL 0/1:14,16:30:99:448,0,380 2 47693959 MMR_c.1661+12G>A G A 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.098;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=0.462;SB=0.00;SOR=0.776;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:11,12:23:99:375,0,367 2 47698308 rs3764959 A G 627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.336;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.179;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=1.001;SB=-1.740e+02;SOR=0.982;VQSLOD=7.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,24:53:99:656,0,858 2 47698384 rs3764960 G A 247.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.344;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.29;ReadPosRankSum=-0.534;SB=-1.240e+02;SOR=0.593;VQSLOD=9.26;culprit=QD GT:AD:DP:GQ:PL 0/1:23,11:34:99:276,0,691 2 47703379 rs2059521 C T 1076.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=0.00;SOR=6.736;VQSLOD=7.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:84:1105,84,0 2 47703500 MMR_c.2006-6T>C T C 1603.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.869;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=3.179;HaplotypeScore=7.1679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-1.027;SB=-5.920e+02;SOR=0.999;VQSLOD=7.33;culprit=DP GT:AD:DP:GQ:PL 0/1:88,60:148:99:1632,0,2348 2 47739551 rs2303424 A G 458.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.097;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=2.434;HaplotypeScore=1.8268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.06;ReadPosRankSum=0.535;SB=-2.330e+02;SOR=0.368;VQSLOD=8.78;culprit=QD GT:AD:DP:GQ:PL 0/1:42,23:65:99:487,0,1255 2 47748292 rs2278139 A G 1699.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.69;SB=-6.930e+02;SOR=1.473;VQSLOD=6.47;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,49:49:99:1728,135,0 2 48010488 rs1042821 G A 833.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.030;SB=-3.250e+02;SOR=0.863;VQSLOD=8.93;culprit=FS GT:AD:DP:GQ:PL 0/1:37,32:69:99:862,0,893 2 48018314 MMR_c.457+52T>A T A 420.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.977;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=-0.116;SB=-3.300e+01;SOR=0.874;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 0/1:11,13:24:99:449,0,329 2 48022900 rs3136316 A G 370.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.71;SB=0.00;SOR=4.977;VQSLOD=8.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:399,33,0 2 48022981 MMR_c.458-52G>T G T 579.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.816;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.493;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=1.259;SB=-3.110e+02;SOR=0.343;VQSLOD=9.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,24:36:99:608,0,257 2 48030458 rs2072447 G C 1160.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.98;SB=-1.673e+02;SOR=3.545;VQSLOD=5.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:87:1189,87,0 2 48032312 MMR_c.3556+146G>A G A 91.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.34;ReadPosRankSum=0.000;SB=0.00;SOR=0.551;VQSLOD=10.05;culprit=QD GT:AD:DP:GQ:PL 0/1:6,5:11:99:120,0,191 2 48032740 . A AT 501.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.741;DP=67;ExcessHet=3.0103;FS=5.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.60;RPA=13,14;RU=T;ReadPosRankSum=0.681;SB=-2.100e+02;SOR=0.224;STR;VQSLOD=8.66;culprit=QD GT:AD:DP:GQ:PL 0/1:38,28:67:99:539,0,725 2 48032874 MMR_c.3646+29_3646+32delCTAT ACTAT A 3858.73 PASS AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.04;RPA=2,1;RU=CTAT;SB=-1.107e+03;SOR=1.961;STR;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:73:99:3896,172,0 2 48032937 rs3136359 T C 1217.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.79;SB=-2.001e+02;SOR=3.321;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:90:1246,90,0 2 48033551 MMR_c.3801+54C>G C G 3557.77 PASS AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=-2.211e+03;SOR=0.853;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,119:119:99:3586,259,0 2 48033890 . CT C 302.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=1.029;POSITIVE_TRAIN_SITE;QD=7.57;RPA=18,17;RU=T;ReadPosRankSum=0.594;SB=-1.360e+02;SOR=0.818;STR;VQSLOD=2.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,22:48:99:340,0,215 2 48040904 . G GA 1188.73 PASS AC=2;AF=1.00;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;RPA=6,7;RU=A;SB=-4.570e+02;SOR=1.387;STR;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:40:99:1226,117,0 2 48047335 rs4381823 A G 176.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.494;SB=-4.276e+01;SOR=0.368;VQSLOD=10.31;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:205,0,157 2 48589683 rs34242257 G A 244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.235;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.162;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.356;SB=-6.600e+01;SOR=1.609;VQSLOD=6.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,10:18:99:273,0,211 2 48602186 rs34136171 A G 1508.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=2.482;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-0.434;SB=-7.700e+02;SOR=0.959;VQSLOD=7.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,56:109:99:1537,0,1476 2 48602252 rs17855177 C T 1253.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=3.915;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-0.440;SB=-7.390e+02;SOR=0.402;VQSLOD=9.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,46:90:99:1282,0,1186 2 48722755 rs4443044 T C 407.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.691;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.973;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=-0.686;SB=-1.000e+02;SOR=1.493;VQSLOD=6.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,15:24:99:436,0,223 2 48725610 rs3811519 C T 353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.605;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.873;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=1.660;SB=-1.330e+02;SOR=0.235;VQSLOD=9.88;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,15:30:99:382,0,453 2 48734576 rs6716341 G A 2067.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;SB=-7.110e+02;SOR=1.863;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2096,157,0 2 48738687 rs4528813 G C 670.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.44;SB=-1.175e+02;SOR=2.948;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:51:699,51,0 2 48807796 rs17039250 A C 1175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.607;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.784;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-0.836;SB=-6.340e+02;SOR=0.874;VQSLOD=7.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,48:96:99:1204,0,1166 2 48807976 rs3828340 T C 1137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.986;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=6.868;HaplotypeScore=3.3600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-1.601;SB=-6.020e+02;SOR=0.806;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 0/1:45,44:89:99:1166,0,1290 2 48808152 rs940389 G C 1718.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.923;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=1.380;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=-0.182;SB=-1.037e+03;SOR=0.565;VQSLOD=8.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:68,63:131:99:1747,0,1863 2 48808594 rs3749142 C T 3960.77 PASS AC=2;AF=1.00;AN=2;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-2.533e+03;SOR=0.739;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,131:131:99:3989,292,0 2 48808818 rs368140957 T C 630.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.911;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.019;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.17;ReadPosRankSum=1.213;SB=-3.330e+02;SOR=0.509;VQSLOD=7.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,25:62:99:659,0,980 2 48808882 rs3749144 T A 454.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=4.097;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.27;ReadPosRankSum=-1.328;SB=-1.550e+02;SOR=1.445;VQSLOD=5.86;culprit=QD GT:AD:DP:GQ:PL 0/1:36,19:55:99:483,0,1025 2 48808898 rs3749145 C T 297.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.476;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=2.821;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.47;ReadPosRankSum=-0.891;SB=-9.700e+01;SOR=1.179;VQSLOD=6.26;culprit=QD GT:AD:DP:GQ:PL 0/1:33,13:46:99:326,0,1055 2 48809593 rs3792234 G T 3301.77 PASS AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.71;SB=-2.213e+03;SOR=0.710;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,115:115:99:3330,241,0 2 48809756 rs3792235 T C 839.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.687;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=7.007;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=-0.888;SB=-2.930e+02;SOR=1.562;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 0/1:30,30:60:99:868,0,696 2 48809873 rs3792236 T C 106.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=4.260;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.67;ReadPosRankSum=0.217;SB=-4.276e+01;SOR=0.072;VQSLOD=9.21;culprit=QD GT:AD:DP:GQ:PL 0/1:10,6:16:99:135,0,336 2 48819197 rs2293276 A G 206.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.269;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.479;HaplotypeScore=2.7431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.13;ReadPosRankSum=0.000;SB=-1.352e-01;SOR=2.406;VQSLOD=5.99;culprit=QD GT:AD:DP:GQ:PL 0/1:21,8:30:99:235,0,638 2 48822381 rs2140551 G A 514.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.002;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=-0.631;SB=-3.110e+02;SOR=0.991;VQSLOD=10.28;culprit=FS GT:AD:DP:GQ:PL 0/1:11,22:33:99:543,0,268 2 48847918 rs72187525 GAATA G,GAATAAATAAATA 1011.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.72;RPA=10,9,12;RU=AATA;SB=-7.894e+00;SOR=5.549;STR;VQSLOD=8.46;culprit=FS GT:AD:DP:GQ:PL 1/2:0,8,7:18:99:1049,665,952,429,0,996 2 48848295 rs13035544 C T 777.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.858;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=1.789;SB=-1.880e+02;SOR=0.741;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:26,27:53:99:806,0,685 2 48872113 rs34156631 A G 603.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.665;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.547;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.87;ReadPosRankSum=-0.096;SB=-2.901e+01;SOR=2.560;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 0/1:13,19:32:99:632,0,323 2 48873582 rs12988176 C T 155.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.131;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=8.929;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.20;ReadPosRankSum=-0.088;SB=-1.352e-01;SOR=3.126;VQSLOD=5.63;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:184,0,372 2 48898798 rs3920390 T A 3766.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.828;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.1769;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.20;ReadPosRankSum=0.900;SB=-1.907e+03;SOR=0.402;VQSLOD=3.55;culprit=FS GT:AD:DP:GQ:PL 1/1:1,128:129:99:3795,280,0 2 48906625 rs1965508 T C 992.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.20;SB=-5.520e+02;SOR=1.085;VQSLOD=5.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:72:1021,72,0 2 48925746 rs6755901 C T 1942.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=-8.650e+02;SOR=1.217;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1971,147,0 2 48948802 rs4490239 T C 319.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.393;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.678;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=1.288;SB=-2.203e+01;SOR=1.981;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 0/1:14,11:25:99:348,0,349 2 48948856 rs4637173 A G 445.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.300;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.29;ReadPosRankSum=-0.280;SB=-1.200e+02;SOR=1.085;VQSLOD=7.50;culprit=QD GT:AD:DP:GQ:PL 0/1:31,17:48:99:474,0,779 2 48952701 rs6545063 C G 369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.09;SB=0.00;SOR=4.804;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:398,30,0 2 48956431 rs11892719 T A 828.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.086;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=0.772;SB=-2.280e+02;SOR=0.610;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:22,28:50:99:857,0,597 2 48956475 rs11887058 C T 499.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.396;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=-1.475;SB=-1.730e+02;SOR=0.735;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:15,19:34:99:528,0,412 2 48956512 rs11897846 A G 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=7.570;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.92;ReadPosRankSum=0.566;SB=-8.497e+01;SOR=0.039;VQSLOD=8.41;culprit=FS GT:AD:DP:GQ:PL 0/1:9,7:16:99:171,0,312 2 48960032 rs10495960 G A 1105.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.241;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=3.200;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-0.657;SB=-3.840e+02;SOR=1.232;VQSLOD=7.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,42:78:99:1134,0,874 2 48982485 rs4073367 T C 334.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.912;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-0.049;SB=-2.070e+02;SOR=0.836;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:14,13:27:99:363,0,348 2 48982622 rs4073366 C G 321.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.662;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.775;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.94;ReadPosRankSum=1.694;SB=-1.760e+02;SOR=0.136;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:7,12:19:99:350,0,180 2 49003458 rs62135453 C T 1317.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.143;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=1.767;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=-0.387;SB=-6.790e+02;SOR=0.518;VQSLOD=9.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,49:88:99:1346,0,979 2 49189921 rs6166 C T 1301.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.446;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=2.810;HaplotypeScore=1.9552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=0.149;SB=-5.220e+02;SOR=1.028;VQSLOD=7.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,49:92:99:1330,0,1124 2 49191041 rs6165 C T 680.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.339;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.125;HaplotypeScore=4.5121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=-0.889;SB=-1.440e+02;SOR=0.971;VQSLOD=7.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,27:63:99:709,0,1125 2 49215977 rs2072488 G A 207.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.666;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=0.978;SB=-3.500e+01;SOR=0.495;VQSLOD=10.16;culprit=FS GT:AD:DP:GQ:PL 0/1:10,8:18:99:236,0,327 2 49216284 rs2072487 C T 125.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=0.525;SB=0.00;SOR=0.551;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:154,0,212 2 49217916 rs2072486 T G 167.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-0.310;SB=-1.765e+00;SOR=0.693;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:196,0,180 2 49241732 rs1922482 C A 376.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.25;SB=0.00;SOR=4.977;VQSLOD=8.91;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,11:11:33:405,33,0 2 49241849 rs6708637 G A 448.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.823;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.16;ReadPosRankSum=0.557;SB=-7.700e+01;SOR=0.846;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 0/1:32,17:49:99:477,0,899 2 49244559 rs2091787 A G 739.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.541;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=1.083;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-0.304;SB=-2.640e+02;SOR=0.484;VQSLOD=9.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,29:68:99:768,0,1192 2 49286879 rs11125201 C A 652.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-0.395;SB=-4.340e+02;SOR=0.673;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 0/1:24,28:52:99:681,0,555 2 49381585 rs1394205 C T 511.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=-0.527;SB=0.00;SOR=0.906;VQSLOD=10.27;culprit=FS GT:AD:DP:GQ:PL 0/1:13,16:29:99:540,0,338 2 49509859 . C CT 308.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.724;DP=26;ExcessHet=3.0103;FS=4.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.87;RPA=5,6;RU=T;ReadPosRankSum=-0.334;SB=-1.807e+01;SOR=2.448;STR;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 0/1:13,13:26:99:346,0,322 2 49510173 rs7578654 A C 444.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.850;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=0.989;SB=-2.460e+02;SOR=0.976;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:11,18:29:99:473,0,315 2 50201110 rs9636391 A G 2630.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=-1.471e+03;SOR=1.116;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2659,199,0 2 50201383 rs4971883 G A 321.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.800;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.231;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.902;SB=-2.801e+01;SOR=1.609;VQSLOD=6.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,12:26:99:350,0,396 2 50280283 rs1363050 T C 621.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.73;SB=-4.276e+01;SOR=4.174;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:650,48,0 2 50280338 rs1363049 G A 562.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.954;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=8.949;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=-1.423;SB=-4.900e+01;SOR=2.765;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 0/1:21,19:40:99:591,0,468 2 50434759 rs1715984 C G 1263.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.39;SB=-6.590e+02;SOR=1.312;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:93:1292,93,0 2 50574485 rs13422484 A G 2115.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-7.520e+02;SOR=2.070;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2144,157,0 2 50692560 rs3213756 A G 3584.77 PASS AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.64;SB=-1.727e+03;SOR=1.362;VQSLOD=6.27;culprit=DP GT:AD:DP:GQ:PL 1/1:0,117:117:99:3613,274,0 2 50692819 rs10168838 T G 1285.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.21;SB=-8.297e+01;SOR=4.863;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:96:1314,96,0 2 50693504 rs75315267 AAC A 315.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;DB;DP=22;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=0.855;SB=-1.430e+02;SOR=0.223;VQSLOD=9.70;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,8:22:99:353,0,689 2 50699305 rs2075234 T A 220.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=0.623;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-1.141;SB=0.00;SOR=0.818;VQSLOD=3.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,8:15:99:249,0,235 2 50723056 . G A 1424.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.593;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.83;ReadPosRankSum=-0.179;SB=-3.640e+02;SOR=0.795;VQSLOD=7.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,51:90:99:1453,0,1158 2 50733545 rs13008919 G T 315.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.129;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=-0.373;SB=-9.900e+01;SOR=0.751;VQSLOD=10.17;culprit=FS GT:AD:DP:GQ:PL 0/1:16,13:29:99:344,0,476 2 50733860 rs7584062 A G 1013.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.0251;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-3.100e+02;SOR=2.235;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:78:1042,78,0 2 50758309 . C CA 410.73 PASS AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;RPA=3,4;RU=A;SB=0.00;SOR=5.283;STR;VQSLOD=8.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:14:39:448,39,0 2 50758657 rs2066948 T C 844.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.40;SB=-7.997e+01;SOR=4.003;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:63:873,63,0 2 50858107 rs961405 T A 577.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-1.981e+02;SOR=1.863;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:606,45,0 2 50966161 rs1713859 G A 1223.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.20;SB=-3.650e+02;SOR=2.303;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1252,99,0 2 50966283 rs1546667 C T 2876.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-1.480e+03;SOR=1.076;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:2905,217,0 2 51254538 rs13426386 C G 634.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.333;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=6.964;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.89;ReadPosRankSum=-0.401;SB=-2.944e+02;SOR=0.098;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 0/1:9,20:29:99:663,0,280 2 51254901 rs1045874 G A 1465.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.347;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=4.697;HaplotypeScore=4.5778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=0.024;SB=-8.690e+02;SOR=0.800;VQSLOD=5.26;culprit=FS GT:AD:DP:GQ:PL 0/1:52,59:111:99:1494,0,1350 2 52799281 rs113337072 A G 145.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.655;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=6.854;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-0.398;SB=-2.501e+01;SOR=1.858;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:174,0,160 2 52799328 rs62128483 G T 138.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.438;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-0.691;SB=-6.700e+01;SOR=0.527;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:167,0,219 2 52799337 rs77257947 C T 198.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=0.752;SB=-5.300e+01;SOR=1.085;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:227,0,166 2 52799345 rs79221790 C G 253.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.116;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.15;ReadPosRankSum=-0.651;SB=-3.500e+01;SOR=1.609;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:99:282,0,127 2 52799574 rs7590459 A T 3237.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.546;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9065;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.65;ReadPosRankSum=0.327;SB=-2.134e+03;SOR=0.748;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:2,111:113:99:3266,219,0 2 52799612 rs60870297 G C 924.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.627;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=0.123;SB=-5.120e+02;SOR=0.674;VQSLOD=8.56;culprit=FS GT:AD:DP:GQ:PL 0/1:58,40:98:99:953,0,1521 2 52799669 rs58520233 G A 558.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.501;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.73;ReadPosRankSum=-0.329;SB=-1.510e+02;SOR=0.782;VQSLOD=8.57;culprit=QD GT:AD:DP:GQ:PL 0/1:41,23:64:99:587,0,1158 2 52799698 rs7564142 C A 728.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.227;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.874;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=-0.935;SB=-1.250e+02;SOR=0.412;VQSLOD=9.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,28:42:99:757,0,404 2 52799714 rs57001563 C A 245.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.069;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.68;ReadPosRankSum=0.775;SB=-3.100e+01;SOR=0.519;VQSLOD=9.30;culprit=QD GT:AD:DP:GQ:PL 0/1:21,11:32:99:274,0,688 2 52929596 rs6711444 C G 307.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.98;ReadPosRankSum=-1.335;SB=0.00;SOR=2.494;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 0/1:2,9:11:49:336,0,49 2 52929680 rs6726779 T C 778.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.588;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=-0.487;SB=-2.940e+02;SOR=0.368;VQSLOD=9.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,29:41:99:807,0,340 2 52929780 rs6726935 T G 997.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.736;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=0.295;SB=-5.440e+02;SOR=0.775;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 0/1:25,38:63:99:1026,0,580 2 52929844 rs6545299 G A 741.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.450;HaplotypeScore=3.5581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=-2.002;SB=-2.360e+02;SOR=0.399;VQSLOD=9.18;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:17,27:44:99:770,0,468 2 53920931 rs7563054 G A 816.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.79;SB=0.00;SOR=6.273;VQSLOD=8.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:845,66,0 2 53921270 rs3731970 C T 200.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.856;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=0.154;SB=0.00;SOR=0.392;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:12,8:20:99:229,0,433 2 53927313 rs76465778 T TAC 898.73 PASS AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.10;RPA=1,2;RU=AC;SB=-5.776e+01;SOR=4.407;STR;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:936,54,0 2 53990532 rs13397311 C T 2670.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.97;SB=-5.140e+02;SOR=3.070;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2699,205,0 2 54023247 rs72502136 GT G 375.73 PASS AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.48;RPA=11,10;RU=T;SB=-5.697e+01;SOR=3.258;STR;VQSLOD=4.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:23:48:413,48,0 2 54035508 rs2287345 G C 3446.77 PASS AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.7449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.02;SB=-2.424e+03;SOR=0.742;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,123:123:99:3475,244,0 2 54080176 . T C 55.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.727;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.72;ReadPosRankSum=1.011;SB=-1.766e+00;SOR=0.368;VQSLOD=7.71;culprit=QD GT:AD:DP:GQ:PL 0/1:12,3:15:84:84,0,331 2 54081923 rs72799239 T G 1863.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.846;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.06;ReadPosRankSum=-0.867;SB=-8.420e+02;SOR=0.466;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:1,59:60:99:1892,141,0 2 54114864 rs2293361 T C 685.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.06;SB=0.00;SOR=5.892;VQSLOD=8.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:714,54,0 2 54115845 rs72799248 T A 2714.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.979;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.83;ReadPosRankSum=1.085;SB=-9.520e+02;SOR=1.028;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:1,90:91:99:2743,177,0 2 54120185 rs1547980 G A 459.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.10;SB=0.00;SOR=5.283;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:488,39,0 2 54120820 rs805412 G A 1341.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-5.050e+02;SOR=1.721;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1370,105,0 2 54122956 rs698856 A G 1608.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-3.600e+02;SOR=2.701;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:51:99:1637,120,0 2 54127041 rs805423 C T 2385.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.81;SB=-1.079e+03;SOR=1.402;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2414,175,0 2 54131154 rs17045370 C T 2691.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-7.800e+02;SOR=2.331;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2720,205,0 2 54146493 . G T 582.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.044;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.551;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.89;ReadPosRankSum=-0.302;SB=-1.510e+02;SOR=1.702;VQSLOD=4.71;culprit=FS GT:AD:DP:GQ:PL 0/1:27,22:49:99:611,0,789 2 54148331 rs805330 C A 312.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=0.00;SOR=4.804;VQSLOD=9.01;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,10:10:27:341,27,0 2 54150237 rs3213775 A G 2324.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=-1.458e+03;SOR=0.720;VQSLOD=7.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2353,169,0 2 54159999 rs3731973 G A 959.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=-2.710e+02;SOR=2.376;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:75:988,75,0 2 54160059 rs3731972 T C 328.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=0.00;SOR=4.804;VQSLOD=8.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:357,30,0 2 54278543 rs1974771 G A 348.78 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.91;SB=-2.570e+02;SOR=0.693;VQSLOD=3.87;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,14:14:27:377,27,0 2 54278585 rs1559037 C G 412.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.40;SB=-2.371e+02;SOR=0.693;VQSLOD=5.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:441,33,0 2 54278667 rs7590846 T C 342.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SB=-2.461e+02;SOR=0.836;VQSLOD=5.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:27:371,27,0 2 54342955 rs2287641 G A 1443.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=-7.410e+02;SOR=1.157;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1472,111,0 2 54342974 rs2287640 A T 1131.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.32;SB=-6.050e+02;SOR=1.312;VQSLOD=5.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:87:1160,87,0 2 54342977 . T C 469.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.613;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.05;ReadPosRankSum=1.406;SB=-2.460e+02;SOR=0.622;VQSLOD=7.57;culprit=FS GT:AD:DP:GQ:PL 0/1:20,19:39:99:498,0,445 2 54343012 rs7573491 C A 943.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-2.301e+02;SOR=2.546;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:972,72,0 2 54362437 rs2357954 T C 697.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.89;SB=-8.497e+01;SOR=3.716;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:726,54,0 2 54362645 rs78531993 T C 2026.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=-1.235e+03;SOR=0.756;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2055,150,0 2 54362726 rs13417064 A G 1463.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.15;SB=-6.880e+02;SOR=1.136;VQSLOD=5.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1492,108,0 2 54482012 . T C 477.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.351;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.11;ReadPosRankSum=-1.000;SB=-3.101e+01;SOR=1.179;VQSLOD=8.41;culprit=FS GT:AD:DP:GQ:PL 0/1:10,15:25:99:506,0,278 2 54494370 rs865816 A G 1151.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.99;SB=-8.097e+01;SOR=4.479;VQSLOD=4.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:87:1180,87,0 2 54557360 rs59595339 A G 510.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.585;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.61;ReadPosRankSum=0.990;SB=-1.580e+02;SOR=1.140;VQSLOD=6.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,18:29:99:539,0,256 2 54587596 rs2280718 C T 2072.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.43;SB=-1.129e+03;SOR=0.899;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2101,157,0 2 54587659 rs13184 G C 551.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.208;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.257;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=1.584;SB=-1.930e+02;SOR=1.371;VQSLOD=7.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,21:47:99:580,0,737 2 54608883 rs11677654 C A 1018.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.96;SB=-5.200e+02;SOR=1.244;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:78:1047,78,0 2 54756740 rs1802889 C T 495.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.54;SB=-2.441e+02;SOR=1.493;VQSLOD=4.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:39:524,39,0 2 54839276 rs3796014 A G 7812.77 PASS AC=2;AF=1.00;AN=2;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-5.071e+03;SOR=0.709;VQSLOD=3.84;culprit=DP GT:AD:DP:GQ:PL 1/1:0,250:250:99:7841,560,0 2 54844911 rs72618664 G A 723.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=-1.195e+02;SOR=3.258;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:57:752,57,0 2 54855137 rs2971887 T C 3057.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-7.730e+02;SOR=2.737;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:3086,226,0 2 54858511 rs1052788 C T 4997.77 PASS AC=2;AF=1.00;AN=2;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.04;SB=-2.614e+03;SOR=1.012;VQSLOD=6.41;culprit=DP GT:AD:DP:GQ:PL 1/1:0,156:156:99:5026,379,0 2 54885314 rs2941586 A T 476.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.97;SB=0.00;SOR=5.283;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:505,39,0 2 54886347 rs1052820 G A 3672.77 PASS AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.25;SB=-2.143e+03;SOR=1.044;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,130:130:99:3701,274,0 2 54893237 rs3817163 C T 753.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.26;SB=-1.215e+02;SOR=3.258;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:782,60,0 2 55040426 rs2631840 A G 4430.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.374;DB;DP=164;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.02;ReadPosRankSum=1.311;SB=-2.902e+03;SOR=0.850;VQSLOD=4.79;culprit=DP GT:AD:DP:GQ:PL 1/1:2,162:164:99:4459,289,0 2 55071101 . T TTGTGTGTG,TTGTGTG 2147.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.76;RPA=20,24,23;RU=TG;SB=-1.646e+02;SOR=4.174;STR;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 1/2:1,9,22:38:99:2185,690,639,346,0,267 2 55074429 rs12465327 C A 258.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.151;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.345;SB=0.00;SOR=0.693;VQSLOD=10.38;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:287,0,278 2 55077043 rs75416471 C G 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=0.677;SB=0.00;SOR=0.582;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:246,0,263 2 55077061 rs12713278 A G 308.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.530;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=0.197;SB=-2.801e+01;SOR=0.693;VQSLOD=10.39;culprit=FS GT:AD:DP:GQ:PL 0/1:11,11:22:99:337,0,316 2 55080703 rs35619447 A C 159.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.173;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.99;ReadPosRankSum=1.351;SB=-1.766e+00;SOR=0.922;VQSLOD=8.99;culprit=QD GT:AD:DP:GQ:PL 0/1:13,7:20:99:188,0,406 2 55093842 rs1961245 G A 834.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.79;SB=-2.121e+02;SOR=2.546;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:69:863,69,0 2 55093859 rs4671981 C G 361.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=1.727;SB=-1.420e+02;SOR=0.807;VQSLOD=9.05;culprit=FS GT:AD:DP:GQ:PL 0/1:18,16:34:99:390,0,482 2 55118078 rs6729866 T G 414.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.548;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=-1.103;SB=0.00;SOR=0.536;VQSLOD=10.02;culprit=FS GT:AD:DP:GQ:PL 0/1:18,15:33:99:443,0,624 2 55121851 rs997198 T A 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.662;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-0.507;SB=0.00;SOR=0.818;VQSLOD=10.06;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:247,0,236 2 55122589 rs6545454 A G 454.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.986;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.41;ReadPosRankSum=0.355;SB=-2.300e+02;SOR=0.859;VQSLOD=6.26;culprit=QD GT:AD:DP:GQ:PL 0/1:49,22:71:99:483,0,1318 2 55126730 rs6545455 C G 876.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.931;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=0.026;SB=-3.290e+02;SOR=0.917;VQSLOD=7.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,32:76:99:905,0,1171 2 55138272 rs2304688 G A 431.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.81;SB=0.00;SOR=5.136;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:460,36,0 2 55155672 rs10164886 A G 4024.77 PASS AC=2;AF=1.00;AN=2;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5946;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.94;SB=-2.248e+03;SOR=0.725;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,126:126:99:4053,310,0 2 55176112 rs13394146 C T 1624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.50;SB=-1.026e+03;SOR=0.877;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1653,123,0 2 55180965 rs4671998 G A 649.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.81;SB=0.00;SOR=5.784;VQSLOD=7.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:678,51,0 2 55181351 rs4671999 T C 192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.52;ReadPosRankSum=1.723;SB=0.00;SOR=1.270;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:221,0,116 2 55186229 rs12623902 T C 1359.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.928;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=5.912;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=0.918;SB=-8.540e+02;SOR=0.570;VQSLOD=5.39;culprit=FS GT:AD:DP:GQ:PL 0/1:31,52:83:99:1388,0,808 2 55186394 rs17346629 A C 917.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=1.800;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=1.305;SB=-5.140e+02;SOR=0.468;VQSLOD=9.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,36:86:99:946,0,1328 2 55187297 . A AG 1380.73 PASS AC=2;AF=1.00;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.27;RPA=4,5;RU=G;SB=-4.620e+02;SOR=1.609;STR;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:38:99:1418,111,0 2 55191897 rs13385999 G T 1088.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=3.085;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=-0.664;SB=-2.900e+02;SOR=1.088;VQSLOD=7.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,39:90:99:1117,0,1312 2 55197070 rs13387710 G C 1351.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.788;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-1.641;SB=-5.050e+02;SOR=0.886;VQSLOD=7.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,53:100:99:1380,0,1314 2 55201038 rs2255026 C T 957.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-3.080e+02;SOR=2.165;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:72:986,72,0 2 55214618 rs2580769 A C 606.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.278;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.212;HaplotypeScore=2.6912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=-1.537;SB=-3.180e+02;SOR=0.242;VQSLOD=10.20;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,25:40:99:635,0,385 2 55214912 rs2580770 C G 516.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.30;SB=-4.376e+01;SOR=4.174;VQSLOD=8.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:545,42,0 2 55252214 rs13401937 T G 519.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.327;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.153;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=-0.245;SB=-9.732e-01;SOR=2.531;VQSLOD=5.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,16:32:99:548,0,469 2 55258704 rs10173203 C G 943.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.512;SB=-4.040e+02;SOR=0.784;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:32,37:69:99:972,0,808 2 55404925 rs6545477 C T 358.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.827;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.481;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.97;ReadPosRankSum=0.815;SB=-1.590e+02;SOR=0.307;VQSLOD=9.56;culprit=QD GT:AD:DP:GQ:PL 0/1:24,16:40:99:387,0,696 2 55407754 rs6716066 C T 3270.77 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.69;SB=-1.798e+03;SOR=1.101;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,114:114:99:3299,247,0 2 55407935 rs10183953 G A 642.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-4.076e+01;SOR=4.407;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:671,51,0 2 55436934 rs9677948 G A 476.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.016;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.17;ReadPosRankSum=1.078;SB=-2.160e+02;SOR=0.765;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:34,18:52:99:505,0,938 2 55439963 rs2118283 C A 1655.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-6.610e+02;SOR=1.651;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1684,123,0 2 55449464 rs17852670 T C 626.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.905;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=1.879;SB=-3.210e+02;SOR=0.732;VQSLOD=8.89;culprit=FS GT:AD:DP:GQ:PL 0/1:27,25:52:99:655,0,643 2 55452014 rs934709 C T 148.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-1.026;SB=-3.500e+01;SOR=1.179;VQSLOD=10.20;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:177,0,136 2 55461823 rs2576722 T A 1344.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=1.750;HaplotypeScore=5.4612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.558;SB=-6.360e+02;SOR=0.523;VQSLOD=9.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,53:97:99:1373,0,1191 2 55470115 rs11357 C T 163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.256;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=1.272;SB=-9.732e-01;SOR=2.303;VQSLOD=5.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,6:14:99:192,0,282 2 55471382 rs61109509 T C 407.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.001;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=3.617;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-0.553;SB=-2.160e+02;SOR=0.239;VQSLOD=9.88;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,15:28:99:436,0,330 2 55471407 rs2589083 T C 742.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-3.610e+02;SOR=1.270;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:771,60,0 2 55473371 rs2576724 A G 271.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.523;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-0.670;SB=-1.765e+00;SOR=1.609;VQSLOD=8.20;culprit=FS GT:AD:DP:GQ:PL 0/1:11,10:21:99:300,0,321 2 55473386 rs3833559 CAT C 725.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.03;ReadPosRankSum=-0.131;SB=-1.620e+02;SOR=0.776;VQSLOD=8.95;culprit=FS GT:AD:DP:GQ:PL 0/1:14,15:30:99:763,0,710 2 55473681 rs2589081 A C 802.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=0.00;SOR=6.184;VQSLOD=8.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:831,63,0 2 55490819 rs1056445 G T 339.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.160;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8979;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=0;MQRankSum=-1.284;POSITIVE_TRAIN_SITE;QD=7.23;ReadPosRankSum=-1.672;SB=-1.160e+02;SOR=1.148;VQSLOD=3.16;culprit=QD GT:AD:DP:GQ:PL 0/1:30,17:47:99:368,0,780 2 55518742 rs2249856 T C 1182.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-4.830e+02;SOR=1.730;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:87:1211,87,0 2 55522422 rs2589110 A G 2687.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.91;SB=-1.429e+03;SOR=0.887;VQSLOD=5.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2716,199,0 2 55523309 . C A 530.77 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.9959;MLEAC=2;MLEAF=1.00;MQ=66.60;MQ0=0;QD=32.52;SB=-4.176e+01;SOR=3.912;VQSLOD=5.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:559,42,0 2 55523309 . C CAA 375.73 PASS AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=66.60;MQ0=0;QD=26.84;RPA=11,13;RU=A;SB=-3.876e+01;SOR=3.912;STR;VQSLOD=5.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:38:413,38,0 2 55527108 rs1545121 G A 2367.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;SB=-8.360e+02;SOR=1.673;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:76:99:2396,178,0 2 55528257 rs2576699 A C 1055.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-5.890e+02;SOR=0.941;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:78:1084,78,0 2 55576634 rs2589090 C T 470.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.702;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.287;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.42;ReadPosRankSum=0.466;SB=-1.350e+02;SOR=1.465;VQSLOD=6.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,20:50:99:499,0,782 2 55582635 rs2589104 T C 180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQ0=0;MQRankSum=1.561;POSITIVE_TRAIN_SITE;QD=8.22;ReadPosRankSum=-0.741;SB=-1.765e+00;SOR=0.760;VQSLOD=2.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,7:22:99:209,0,490 2 55582684 rs1437394 A T 537.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.422;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQ0=0;MQRankSum=1.236;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=-1.373;SB=-6.200e+01;SOR=0.941;VQSLOD=3.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,19:46:99:566,0,864 2 55589434 rs3111412 T A 64.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.136;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.32;ReadPosRankSum=1.842;SB=-6.400e+01;SOR=0.368;VQSLOD=8.62;culprit=QD GT:AD:DP:GQ:PL 0/1:10,5:15:93:93,0,311 2 55599655 rs3111411 G A 122.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.38;ReadPosRankSum=0.053;SB=-5.300e+01;SOR=0.976;VQSLOD=9.00;culprit=QD GT:AD:DP:GQ:PL 0/1:21,7:29:99:151,0,532 2 55662398 rs10865285 C A 39.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.06;ReadPosRankSum=-0.669;SB=-5.600e+01;SOR=0.527;VQSLOD=9.02;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:68:68,0,199 2 55662423 rs2100454 T C 64.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.163;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.98;ReadPosRankSum=1.202;SB=-5.600e+01;SOR=0.527;VQSLOD=9.38;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:93:93,0,227 2 55749085 rs12992408 T G 592.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.87;SB=-4.276e+01;SOR=3.383;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:45:621,45,0 2 55750738 rs3748944 T C 166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-1.092;SB=0.00;SOR=0.693;VQSLOD=10.33;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:195,0,197 2 55760830 rs67734632 CA C 39.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.84;RPA=15,14;RU=A;ReadPosRankSum=-2.184;SB=0.00;SOR=0.307;STR;VQSLOD=8.72;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:14:77:77,0,145 2 55760844 rs9808405 A T 112.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.731;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.05;ReadPosRankSum=-2.062;SB=0.00;SOR=0.340;VQSLOD=9.00;culprit=QD GT:AD:DP:GQ:PL 0/1:10,6:16:99:141,0,347 2 55760940 rs4671248 G T 1993.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SB=-4.840e+02;SOR=2.468;VQSLOD=7.17;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,58:60:99:2022,150,0 2 55771050 rs3816489 C G 445.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.29;SB=-8.197e+01;SOR=2.833;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:474,36,0 2 55771161 rs1045910 A G 830.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-4.380e+02;SOR=0.693;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:63:859,63,0 2 55805440 rs2903704 T C 1736.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7260;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.94;SB=-8.530e+02;SOR=1.382;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1765,135,0 2 55806924 rs67834644 CAT C 1289.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=1.053;POSITIVE_TRAIN_SITE;QD=22.63;ReadPosRankSum=1.469;SB=-4.030e+02;SOR=0.793;VQSLOD=3.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,28:57:99:1327,0,1436 2 55812061 rs4312532 A G 1080.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SB=-4.276e+01;SOR=5.610;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:93:1109,93,0 2 55844105 rs782593 C T 862.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.50;SB=0.00;SOR=6.358;VQSLOD=8.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:891,69,0 2 55871841 . G A 377.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.472;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-0.479;SB=-1.750e+02;SOR=0.719;VQSLOD=8.15;culprit=FS GT:AD:DP:GQ:PL 0/1:23,17:41:99:406,0,528 2 55871932 rs71393504 AT A 41.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.61;RPA=14,13;RU=T;ReadPosRankSum=0.170;SB=-3.900e+01;SOR=0.301;STR;VQSLOD=6.76;culprit=QD GT:AD:DP:GQ:PL 0/1:11,5:18:79:79,0,251 2 55889062 rs782604 G A 414.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.56;SB=-4.076e+01;SOR=3.611;VQSLOD=7.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:443,33,0 2 55894090 rs13009649 A G 295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.101;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=1.333;SB=0.00;SOR=0.804;VQSLOD=8.25;culprit=FS GT:AD:DP:GQ:PL 0/1:8,9:17:99:324,0,260 2 55894428 rs12329050 G A 428.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.69;SB=0.00;SOR=5.136;VQSLOD=8.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:457,36,0 2 55898105 rs61121266 TAA T 228.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.493;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;MQRankSum=0.253;POSITIVE_TRAIN_SITE;QD=22.88;RPA=13,11;RU=A;ReadPosRankSum=-0.253;SB=0.00;SOR=2.303;STR;VQSLOD=3.49;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,8:10:21:266,21,0 2 55899228 rs782631 A T 478.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.44;SB=-4.076e+01;SOR=3.767;VQSLOD=7.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:507,39,0 2 56094578 . C CT 59.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.43;RPA=14,15;RU=T;ReadPosRankSum=1.158;SB=0.00;SOR=0.551;STR;VQSLOD=7.80;culprit=QD GT:AD:DP:GQ:PL 0/1:6,5:15:97:97,0,108 2 56101976 rs72807770 T A 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQ0=0;MQRankSum=0.198;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.231;SB=-1.768e+00;SOR=1.473;VQSLOD=3.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,10:22:99:295,0,361 2 56102019 rs55778215 T C 680.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.291;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQ0=0;MQRankSum=0.061;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=0.021;SB=-1.350e+02;SOR=0.646;VQSLOD=3.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,23:47:99:709,0,694 2 56103682 rs17047287 T C 575.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.073;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=0.566;SB=-9.200e+01;SOR=0.428;VQSLOD=9.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,21:49:99:604,0,853 2 56108689 rs11680866 G A 416.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.126;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.51;ReadPosRankSum=1.037;SB=-9.800e+01;SOR=0.674;VQSLOD=9.01;culprit=QD GT:AD:DP:GQ:PL 0/1:30,19:49:99:445,0,894 2 56108882 rs3748959 T C 1453.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.285;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=0.626;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=0.037;SB=-7.860e+02;SOR=0.775;VQSLOD=7.74;culprit=DP GT:AD:DP:GQ:PL 0/1:88,60:148:99:1482,0,2217 2 56149709 rs144439912 C T 606.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.783;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.27;ReadPosRankSum=0.705;SB=-1.100e+02;SOR=1.893;VQSLOD=5.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,21:25:59:635,0,59 2 56216052 rs10865292 G A 2486.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=-9.720e+02;SOR=1.781;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2515,193,0 2 56411817 rs35587531 C T 406.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.128;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.34;ReadPosRankSum=0.743;SB=-2.102e+02;SOR=0.283;VQSLOD=8.77;culprit=QD GT:AD:DP:GQ:PL 0/1:5,15:20:99:435,0,117 2 56570006 rs76743159 A G 491.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.723;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.356;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=-0.840;SB=-1.690e+02;SOR=1.022;VQSLOD=7.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,17:36:99:520,0,566 2 58275666 rs986512 G A 871.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.24;SB=-4.320e+02;SOR=1.473;VQSLOD=4.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:66:900,66,0 2 58350504 rs7558007 A G 488.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.13;SB=0.00;SOR=5.283;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:517,39,0 2 58388696 rs848291 A G 1868.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;SB=-1.097e+03;SOR=0.831;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1897,138,0 2 58390538 rs10445895 T C 685.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-2.461e+02;SOR=2.030;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:51:714,51,0 2 58390547 rs10445896 G A 813.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.14;SB=-2.311e+02;SOR=2.387;VQSLOD=7.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:63:842,63,0 2 58453930 rs79588315 A G 599.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.26;SB=-3.900e+02;SOR=0.874;VQSLOD=4.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:45:628,45,0 2 58468222 . G C 742.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.692;DP=55;Dels=0.00;ExcessHet=3.0103;FS=8.151;HaplotypeScore=6.4382;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=0.000;QD=13.75;ReadPosRankSum=-0.408;SB=-5.500e+01;SOR=2.168;VQSLOD=4.49;culprit=FS GT:AD:DP:GQ:PL 0/1:29,25:55:99:771,0,742 2 59230996 rs6545711 A C 341.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-8.297e+01;SOR=2.494;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:370,27,0 2 59246730 rs71394430 CT C 304.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQ0=0;MQRankSum=0.000;QD=7.81;RPA=14,13;RU=T;ReadPosRankSum=0.071;SB=-7.600e+01;SOR=0.752;STR;VQSLOD=6.65;culprit=QD GT:AD:DP:GQ:PL 0/1:21,18:40:99:342,0,404 2 59249956 rs61058747 A G 252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=2.030;SB=0.00;SOR=1.112;VQSLOD=9.27;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:6,9:15:99:281,0,193 2 60687959 rs7569946 A G 2177.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.322;DB;DP=199;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=0.736;SB=-1.129e+03;SOR=0.669;VQSLOD=6.37;culprit=DP GT:AD:DP:GQ:PL 0/1:120,79:199:99:2206,0,3280 2 60688739 rs142120696 G A 433.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.920;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.51;ReadPosRankSum=0.724;SB=-2.670e+02;SOR=0.578;VQSLOD=8.91;culprit=QD GT:AD:DP:GQ:PL 0/1:31,20:51:99:462,0,854 2 60768978 rs2665668 G A 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=-0.977;SB=-6.400e+01;SOR=0.527;VQSLOD=10.18;culprit=FS GT:AD:DP:GQ:PL 0/1:10,6:16:99:201,0,209 2 60962118 rs3796068 T C 910.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.816;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.858;HaplotypeScore=3.6063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-0.601;SB=-6.280e+02;SOR=0.623;VQSLOD=8.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,37:78:99:939,0,942 2 60962589 rs11692811 T C 914.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.406;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=6.431;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.50;ReadPosRankSum=0.680;SB=-3.710e+02;SOR=0.203;VQSLOD=9.29;culprit=FS GT:AD:DP:GQ:PL 0/1:26,33:59:99:943,0,727 2 60962833 rs34405203 G A 262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.419;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.570;SB=-1.765e+00;SOR=1.460;VQSLOD=8.37;culprit=FS GT:AD:DP:GQ:PL 0/1:11,9:20:99:291,0,370 2 61007782 rs10496089 A G 1206.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.410;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-0.311;SB=-3.210e+02;SOR=0.575;VQSLOD=9.29;culprit=FS GT:AD:DP:GQ:PL 0/1:64,45:109:99:1235,0,1937 2 61008036 rs3845814 C T 1293.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.28;SB=-4.276e+01;SOR=5.784;VQSLOD=4.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:99:1322,105,0 2 61009699 rs34284101 GA G 135.75 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.57;RPA=11,10;RU=A;ReadPosRankSum=1.221;SB=0.00;SOR=2.303;STR;VQSLOD=5.40;culprit=FS GT:AD:DP:GQ:PL 0/1:2,8:10:24:173,0,24 2 61009909 rs10197672 C T 895.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=17.3707;MLEAC=1;MLEAF=0.500;MQ=59.81;MQ0=0;MQRankSum=0.606;POSITIVE_TRAIN_SITE;QD=16.90;ReadPosRankSum=0.334;SB=-3.050e+02;SOR=0.808;VQSLOD=3.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,36:54:99:924,0,365 2 61021349 rs11125855 A G 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.623;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.934;SB=0.00;SOR=0.693;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:246,0,231 2 61109147 rs114451747 A G 322.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.023;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-0.768;SB=-1.640e+02;SOR=0.481;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:13,16:29:99:351,0,416 2 61121492 rs842644 G A 659.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.29;SB=0.00;SOR=5.892;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:688,54,0 2 61187478 rs375391646 CA C 46.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.60;RPA=17,16;RU=A;ReadPosRankSum=0.890;SB=0.00;SOR=0.255;STR;VQSLOD=7.41;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:19:84:84,0,238 2 61189740 rs373067003 TA T 210.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQ0=0;MQRankSum=1.083;QD=8.78;RPA=10,9;RU=A;ReadPosRankSum=-0.202;SB=-9.300e+01;SOR=0.418;STR;VQSLOD=1.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,12:24:99:248,0,278 2 61237739 rs13026685 C G 458.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.818;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-0.052;SB=-9.100e+01;SOR=0.693;VQSLOD=9.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,17:34:99:487,0,496 2 61245551 rs12996059 G C 804.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.850;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=0.652;SB=-1.270e+02;SOR=1.214;VQSLOD=7.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,28:60:99:833,0,893 2 61245604 rs70959887 AT A 76.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.48;RPA=10,9;RU=T;ReadPosRankSum=1.268;SB=0.00;SOR=0.473;STR;VQSLOD=7.73;culprit=QD GT:AD:DP:GQ:PL 0/1:8,6:18:99:114,0,182 2 61304002 rs1729657 A G 528.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.640;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.660;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-0.678;SB=-6.100e+01;SOR=1.316;VQSLOD=7.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,20:47:99:557,0,749 2 61308517 rs1177295 A G 276.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.640;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=5.029;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.14;ReadPosRankSum=0.104;SB=-8.400e+01;SOR=1.432;VQSLOD=5.93;culprit=QD GT:AD:DP:GQ:PL 0/1:19,15:34:99:305,0,522 2 61319728 . A AT 448.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;DP=61;ExcessHet=3.0103;FS=2.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.87;RPA=11,12;RU=T;ReadPosRankSum=0.464;SB=-1.230e+02;SOR=1.135;STR;VQSLOD=5.23;culprit=QD GT:AD:DP:GQ:PL 0/1:34,23:61:99:486,0,692 2 61324784 rs60829129 A G 133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.55;ReadPosRankSum=-1.595;SB=-1.020e+02;SOR=0.120;VQSLOD=8.56;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,7:14:99:162,0,202 2 61349446 rs1177284 G A 473.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.601;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-0.264;SB=-6.700e+01;SOR=0.368;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:17,18:35:99:502,0,542 2 61349451 rs115069423 G C 426.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.068;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-0.306;SB=-7.200e+01;SOR=0.368;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:14,15:29:99:455,0,440 2 61384906 rs7558954 T C 387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.211;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.818;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-1.646;SB=-9.200e+01;SOR=0.299;VQSLOD=9.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,15:39:99:416,0,754 2 61385248 rs1177309 A G 671.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.624;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=0.497;SB=-4.270e+02;SOR=0.693;VQSLOD=8.53;culprit=FS GT:AD:DP:GQ:PL 0/1:21,25:46:99:700,0,508 2 61389609 rs17006627 G C 773.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.944;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=0.227;SB=-4.480e+02;SOR=0.465;VQSLOD=9.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,31:76:99:802,0,1220 2 61389737 rs1729674 T G 371.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.229;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.75;ReadPosRankSum=-0.055;SB=-1.230e+02;SOR=0.776;VQSLOD=9.14;culprit=QD GT:AD:DP:GQ:PL 0/1:32,16:48:99:400,0,854 2 61412559 rs777585 C T 110.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.496;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.54;ReadPosRankSum=1.353;SB=-1.765e+00;SOR=0.495;VQSLOD=8.32;culprit=QD GT:AD:DP:GQ:PL 0/1:15,5:20:99:139,0,499 2 61413723 rs1809028 A G 943.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.366;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=1.675;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=-0.633;SB=-3.330e+02;SOR=0.876;VQSLOD=7.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,41:94:99:972,0,1519 2 61415193 rs373240678 G C 985.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=3.325;HaplotypeScore=1.5810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.94;ReadPosRankSum=-2.174;SB=-6.240e+02;SOR=0.591;VQSLOD=4.21;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:28,38:66:99:1014,0,749 2 61415492 rs14170 A G 638.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.764;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.240;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=0.160;SB=-2.760e+02;SOR=0.363;VQSLOD=9.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,24:49:99:667,0,721 2 61417617 rs777591 A G 616.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.306;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=0.000;SB=-3.080e+02;SOR=0.719;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:29,23:52:99:645,0,856 2 61439206 rs751341 C T 165.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.780;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=0.564;SB=-4.176e+01;SOR=0.569;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:194,0,248 2 61448776 rs2290324 A C 781.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.287;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=7.854;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-1.154;SB=-4.260e+02;SOR=0.183;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 0/1:29,31:60:99:810,0,896 2 61450454 rs2123111 A G 343.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.027;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.988;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=1.172;SB=-1.800e+02;SOR=0.145;VQSLOD=9.41;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,17:31:99:372,0,429 2 61456611 rs145830957 C A 80.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.08;ReadPosRankSum=-0.105;SB=-2.701e+01;SOR=1.022;VQSLOD=8.01;culprit=QD GT:AD:DP:GQ:PL 0/1:3,7:10:29:109,0,29 2 61483715 . A T 325.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.321;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.06;ReadPosRankSum=2.116;SB=0.00;SOR=2.147;VQSLOD=6.42;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:3,10:13:77:354,0,77 2 61483725 . T A 292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.40;ReadPosRankSum=2.838;SB=0.00;SOR=1.981;VQSLOD=6.26;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:3,9:12:57:321,0,57 2 61511865 rs77542524 C T 515.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.278;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=-0.170;SB=0.00;SOR=1.358;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:9,16:25:99:544,0,281 2 61520815 rs7566035 C T 194.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.129;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-0.066;SB=0.00;SOR=0.836;VQSLOD=9.88;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:223,0,200 2 61522047 rs35292974 T C 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=-0.250;SB=-1.765e+00;SOR=1.402;VQSLOD=9.20;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:207,0,199 2 61522123 rs13014347 T C 889.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.68;SB=-2.441e+02;SOR=2.546;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:69:918,69,0 2 61528299 . T TA 362.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;DP=38;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;RPA=6,7;RU=A;ReadPosRankSum=-0.494;SB=-1.300e+02;SOR=0.297;STR;VQSLOD=9.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,16:38:99:400,0,485 2 61552484 rs2593624 T A 338.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.342;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.828;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.137;SB=-9.400e+01;SOR=1.508;VQSLOD=6.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,14:25:99:367,0,304 2 61570886 rs72381726 AAAGT A 757.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;DB;DP=37;ExcessHet=3.0103;FS=5.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=0.568;SB=-1.880e+02;SOR=0.072;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:22,14:37:99:795,0,1365 2 61575308 rs6722430 A G 3342.77 PASS AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-2.005e+03;SOR=0.789;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,107:107:99:3371,256,0 2 61576517 rs811378 G A 2014.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-7.670e+02;SOR=1.609;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2043,153,0 2 61577949 rs811871 C T 103.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-2.074;SB=0.00;SOR=0.412;VQSLOD=9.12;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:6,4:10:99:132,0,156 2 61605614 rs10208769 T A 253.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=-0.128;SB=-6.701e+01;SOR=0.760;VQSLOD=10.37;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:282,0,129 2 61622251 rs3213951 C T 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.18;ReadPosRankSum=0.450;SB=-9.200e+01;SOR=0.941;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:166,0,280 2 61633305 rs76092881 C T 508.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.944;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=-1.177;SB=-9.500e+01;SOR=0.852;VQSLOD=9.29;culprit=FS GT:AD:DP:GQ:PL 0/1:12,19:31:99:537,0,341 2 61644329 rs13028833 C G 232.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=-0.193;SB=-7.300e+01;SOR=0.760;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:261,0,165 2 61647901 rs778155 A G 721.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.769;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.047;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=0.854;SB=-4.150e+02;SOR=0.790;VQSLOD=7.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,26:53:99:750,0,597 2 61648909 rs34490089 AAC A 254.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=0.396;QD=19.59;RPA=12,11;RU=AC;ReadPosRankSum=1.286;SB=-7.504e+01;SOR=1.022;STR;VQSLOD=2.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,9:15:71:292,0,71 2 61709349 rs9679557 C A 207.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=2.000;SB=-1.765e+00;SOR=2.419;VQSLOD=5.88;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,7:12:99:236,0,132 2 61713209 rs35844473 GGAAAATC G 1016.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.290;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=2.469;SB=0.00;SOR=0.784;VQSLOD=8.86;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:10,11:24:99:1054,0,1010 2 61713218 rs60155512 T A 339.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.510;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.99;ReadPosRankSum=1.942;SB=0.00;SOR=0.892;VQSLOD=8.17;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,11:20:99:368,0,291 2 61713220 . T G 351.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.51;ReadPosRankSum=1.656;SB=0.00;SOR=1.022;VQSLOD=8.16;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:19:99:380,0,261 2 61715190 rs143807080 C G 567.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.476;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=-0.766;SB=-1.680e+02;SOR=0.538;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:17,23:40:99:596,0,477 2 61722519 rs150416626 G GA 781.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;DB;DP=63;ExcessHet=3.0103;FS=2.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;RPA=5,6;RU=A;ReadPosRankSum=0.784;SB=-3.370e+02;SOR=0.433;STR;VQSLOD=9.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,31:63:99:819,0,789 2 61729258 rs2305155 A G 494.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.826;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=7.305;HaplotypeScore=2.8514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.968;SB=-1.180e+02;SOR=2.120;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 0/1:22,19:41:99:523,0,688 2 61729268 rs2305156 T C 653.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.537;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=8.905;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=0.587;SB=-1.560e+02;SOR=2.007;VQSLOD=5.72;culprit=FS GT:AD:DP:GQ:PL 0/1:22,22:44:99:682,0,605 2 61749690 rs3732171 C T 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.875;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=4.151;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=1.214;SB=-5.400e+01;SOR=1.911;VQSLOD=6.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,13:27:99:375,0,389 2 61749716 rs3732170 C T 434.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.695;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.366;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=-0.095;SB=-1.920e+02;SOR=1.136;VQSLOD=7.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,19:36:99:463,0,401 2 61753786 rs7421663 C T 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.21;ReadPosRankSum=-0.596;SB=0.00;SOR=1.609;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:4,9:13:99:317,0,127 2 62063093 . TA T 463.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.237;DP=29;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.500;MQ=60.37;MQ0=0;MQRankSum=0.516;POSITIVE_TRAIN_SITE;QD=16.56;RPA=17,16;RU=A;ReadPosRankSum=0.137;SB=-2.180e+02;SOR=0.175;STR;VQSLOD=0.476;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:3,25:29:19:461,19,0 2 62065851 rs17513666 C T 1258.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.36;SB=-5.740e+02;SOR=1.609;VQSLOD=4.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:96:1287,96,0 2 62066927 rs4672457 A G 3440.77 PASS AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.00;SB=-1.662e+03;SOR=1.042;VQSLOD=5.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,111:111:99:3469,256,0 2 62067433 rs17513722 T C 1456.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-8.980e+02;SOR=0.733;VQSLOD=5.92;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,49:49:99:1485,108,0 2 62073918 rs58256183 C T 1520.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.25;SB=-6.320e+02;SOR=1.747;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1549,117,0 2 62074140 rs61466786 A AAC 461.74 PASS AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;QD=31.28;RPA=1,2;RU=AC;SB=0.00;SOR=4.804;STR;VQSLOD=7.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:13:30:499,30,0 2 62081012 rs4270331 A C 1354.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.87;SB=-3.930e+02;SOR=1.981;VQSLOD=7.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1383,102,0 2 62081217 rs1881616 A G 875.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-4.176e+01;SOR=4.892;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:66:904,66,0 2 62096790 rs149499966 TTCTG T 4177.73 PASS AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SB=-9.810e+02;SOR=2.303;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:68:99:4215,187,0 2 62104343 rs7571143 C T 439.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.83;SB=-7.697e+01;SOR=2.833;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:468,36,0 2 62107376 rs63367862 T TC 1842.73 PASS AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=38.05;SB=-2.961e+02;SOR=3.202;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1880,117,0 2 62112221 rs35876878 G GA 1009.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.246;DB;DP=49;ExcessHet=3.0103;FS=6.435;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=1.694;SB=-2.041e+02;SOR=2.526;VQSLOD=5.53;culprit=FS GT:AD:DP:GQ:PL 1/1:1,43:49:99:1047,114,0 2 62112222 . G A 1456.77 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=44.4394;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=30.35;SB=-4.980e+02;SOR=2.030;VQSLOD=5.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1485,108,0 2 62112246 . C CT 429.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.53;RPA=12,13;RU=T;ReadPosRankSum=-1.583;SB=-5.997e+01;SOR=0.598;STR;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:6,20:33:68:467,0,68 2 62228180 rs55785307 C G 1936.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.28;SB=-5.260e+02;SOR=2.546;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1965,144,0 2 62729297 rs6756655 T C 612.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.66;SB=0.00;SOR=4.294;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:641,48,0 2 62729653 rs6713096 A G 1705.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.45;SB=-8.000e+02;SOR=0.994;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1734,132,0 2 62729674 rs4672527 T C 1749.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-9.410e+02;SOR=0.818;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1778,129,0 2 62729747 . G GA 1727.73 PASS AC=2;AF=1.00;AN=2;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;RPA=6,7;RU=A;SB=-6.760e+02;SOR=1.302;STR;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:58:99:1765,168,0 2 62730048 rs4672528 T A 416.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.23;SB=0.00;SOR=4.977;VQSLOD=8.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:445,33,0 2 62733189 rs17854454 C T 2178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.946;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=6.233;HaplotypeScore=3.7763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=-1.131;SB=-1.281e+03;SOR=0.348;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 0/1:67,86:153:99:2207,0,1655 2 62733201 rs78110679 A T 1900.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.132;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=3.217;HaplotypeScore=2.7988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.073;SB=-9.110e+02;SOR=0.452;VQSLOD=8.24;culprit=DP GT:AD:DP:GQ:PL 0/1:65,75:140:99:1929,0,1760 2 62733253 rs11676567 C T 1280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.781;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=0.854;SB=-2.770e+02;SOR=0.690;VQSLOD=8.80;culprit=FS GT:AD:DP:GQ:PL 0/1:39,44:83:99:1309,0,1034 2 62738883 rs6757222 C T 822.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.28;SB=-2.001e+02;SOR=2.494;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:63:851,63,0 2 62738931 rs6757448 G C 1358.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.35;SB=-6.110e+02;SOR=1.402;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1387,99,0 2 63170905 rs75746135 A G 763.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=-2.800e+02;SOR=1.981;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:57:792,57,0 2 63176139 rs17432615 A C 2314.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-1.200e+03;SOR=0.910;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2343,172,0 2 63182611 . G GT 233.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;DP=23;ExcessHet=3.0103;FS=2.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;RPA=10,11;RU=T;ReadPosRankSum=0.031;SB=-3.539e+00;SOR=1.739;STR;VQSLOD=5.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,13:23:99:271,0,195 2 63401820 rs61734468 T C 1065.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.746;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=4.480;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=0.284;SB=-6.170e+02;SOR=0.346;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:38,43:81:99:1094,0,1031 2 63540324 rs1517403 A G 1728.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-7.350e+02;SOR=1.651;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1757,126,0 2 63540523 rs1517402 A T 489.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.65;SB=-7.397e+01;SOR=3.126;VQSLOD=5.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:518,39,0 2 63605772 rs2292794 A G 1145.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.05;SB=0.00;SOR=6.804;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:87:1174,87,0 2 63609017 rs2138796 A T 1471.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.755;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=6.857;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.99;ReadPosRankSum=1.168;SB=-5.200e+02;SOR=0.760;VQSLOD=1.70;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,45:46:86:1500,86,0 2 63631889 rs4671501 A C 1587.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.36;SB=-1.225e+02;SOR=4.615;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1616,120,0 2 63631921 rs4671502 C T 824.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-4.076e+01;SOR=5.058;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:853,69,0 2 63660902 rs17617459 C T 1365.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.191;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=2.324;HaplotypeScore=4.8880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.29;ReadPosRankSum=0.493;SB=-4.360e+02;SOR=0.956;VQSLOD=7.09;culprit=DP GT:AD:DP:GQ:PL 0/1:91,56:148:99:1394,0,2219 2 63719887 rs17617855 T C 133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.57;ReadPosRankSum=0.033;SB=-9.732e-01;SOR=0.927;VQSLOD=7.79;culprit=QD GT:AD:DP:GQ:PL 0/1:18,6:24:99:162,0,566 2 63720210 rs7563623 A G 825.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.43;SB=0.00;SOR=6.184;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:854,63,0 2 63798333 rs4671068 C T 596.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.13;SB=-3.930e+02;SOR=0.874;VQSLOD=3.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:45:625,45,0 2 63815206 rs1109027 A G 384.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.543;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.078;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=0.390;SB=-8.097e+01;SOR=0.141;VQSLOD=9.91;culprit=SOR GT:AD:DP:GQ:PL 0/1:11,15:26:99:413,0,350 2 63816672 rs10469944 C G 746.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.99;SB=0.00;SOR=5.994;VQSLOD=8.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:775,57,0 2 63822785 rs2305157 T C 2057.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.82;SB=-1.213e+03;SOR=0.910;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2086,150,0 2 63826528 rs7606045 T G 490.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=0.00;SOR=5.283;VQSLOD=8.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:519,39,0 2 64069311 rs4671534 G C 3216.73 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.1029;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.22;SB=-1.460e+03;SOR=1.651;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,114:114:99:3245,238,0 2 64069732 rs6546029 G A 1196.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.19;SB=-1.941e+02;SOR=3.321;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:90:1225,90,0 2 64082619 rs34900788 G C 604.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6728;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.24;SB=-2.061e+02;SOR=1.721;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:48:633,48,0 2 64084005 rs35253921 G A 2523.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.55;SB=-7.010e+02;SOR=2.362;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2552,193,0 2 64085114 rs10183479 G A 3059.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SB=-1.762e+03;SOR=1.036;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3088,229,0 2 64089748 rs6732746 C A 484.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=0.00;SOR=5.283;VQSLOD=7.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:513,39,0 2 64112706 . C CT 138.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;DP=20;ExcessHet=3.0103;FS=3.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.71;RPA=12,13;RU=T;ReadPosRankSum=1.067;SB=-3.897e+01;SOR=0.105;STR;VQSLOD=7.23;culprit=QD GT:AD:DP:GQ:PL 0/1:8,10:20:99:176,0,150 2 64114553 rs147051654 G A 1004.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.898;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=13.510;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-1.066;SB=-6.030e+02;SOR=0.120;VQSLOD=5.03;culprit=FS GT:AD:DP:GQ:PL 0/1:30,39:70:99:1033,0,881 2 64118158 . T TAA 148.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.783;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.30;RPA=12,14;RU=A;ReadPosRankSum=0.615;SB=-3.300e+01;SOR=0.693;STR;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:17:99:186,0,234 2 64124440 rs34502946 TAA T 152.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=1.618;POSITIVE_TRAIN_SITE;QD=9.55;RPA=3,1;RU=A;ReadPosRankSum=-0.794;SB=-1.764e+00;SOR=0.784;STR;VQSLOD=3.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,5:16:99:190,0,532 2 64126765 rs3815616 A G 578.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.371;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.166;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=-0.085;SB=-2.850e+02;SOR=0.495;VQSLOD=9.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,25:51:99:607,0,708 2 64139901 rs2302809 A T 589.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.37;SB=0.00;SOR=5.670;VQSLOD=7.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:618,48,0 2 64140301 rs10207847 A T 1229.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.33;SB=-5.370e+02;SOR=1.414;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:46:93:1258,93,0 2 64144020 rs190823081 A T 853.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.094;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.961;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-1.129;SB=-3.930e+02;SOR=0.877;VQSLOD=7.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,33:65:99:882,0,783 2 64144021 rs183006584 A C 891.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.732;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.947;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=-1.505;SB=-4.590e+02;SOR=0.850;VQSLOD=7.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,34:65:99:920,0,757 2 64195997 rs61561291 C CA 239.74 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.703;DB;DP=16;ExcessHet=3.0103;FS=3.468;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;MQRankSum=0.567;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.98;RPA=14,15;RU=A;ReadPosRankSum=0.636;SB=-4.554e+01;SOR=2.303;STR;VQSLOD=0.179;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,14:16:26:277,26,0 2 64210875 rs13025640 C A 244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.40;ReadPosRankSum=-0.487;SB=0.00;SOR=1.445;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:99:273,0,123 2 64331815 . CT C 135.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.67;RPA=17,16;RU=T;ReadPosRankSum=0.433;SB=-4.900e+01;SOR=0.892;STR;VQSLOD=8.24;culprit=QD GT:AD:DP:GQ:PL 0/1:22,15:41:99:173,0,415 2 64682364 rs3770741 A C 1226.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-3.620e+02;SOR=2.133;VQSLOD=5.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:93:1255,93,0 2 65200618 rs4671636 C A 1166.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-4.720e+02;SOR=1.670;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:87:1195,87,0 2 65245365 rs759458 G A 1424.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=-1.111;SB=-8.720e+02;SOR=0.684;VQSLOD=8.64;culprit=FS GT:AD:DP:GQ:PL 0/1:79,59:138:99:1453,0,2118 2 65296798 rs7572857 G A 1845.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.909;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=1.326;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.569;SB=-1.135e+03;SOR=0.569;VQSLOD=8.83;culprit=DP GT:AD:DP:GQ:PL 0/1:72,69:141:99:1874,0,1835 2 65298839 rs17849707 A G 1133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.113;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=-1.184;SB=-4.100e+02;SOR=0.617;VQSLOD=8.71;culprit=FS GT:AD:DP:GQ:PL 0/1:78,43:121:99:1162,0,2296 2 65315880 rs1420184 G C 416.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=5.972;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.85;ReadPosRankSum=1.124;SB=-2.402e+01;SOR=2.985;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 0/1:8,13:21:99:445,0,199 2 65315903 rs1420185 G A 312.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.341;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=7.375;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=1.512;SB=-9.732e-01;SOR=3.145;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:19:99:341,0,237 2 65325265 rs76210337 A G 698.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.891;DB;DP=63;Dels=0.05;ExcessHet=3.0103;FS=2.188;HaplotypeScore=12.3817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=0.334;SB=-3.170e+02;SOR=1.057;VQSLOD=7.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,30:60:99:727,0,734 2 65341374 rs17029863 T C 431.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.871;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-0.036;SB=-2.200e+02;SOR=0.162;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:17,16:33:99:460,0,505 2 65481008 rs268871 A C 627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.740;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=-1.187;SB=-3.840e+02;SOR=0.586;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:42,27:69:99:656,0,1106 2 65488538 rs268862 G A 427.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.622;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.864;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-0.030;SB=-2.650e+02;SOR=0.895;VQSLOD=6.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,19:37:99:456,0,542 2 65495570 rs55843720 A C 131.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.420;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.24;ReadPosRankSum=2.269;SB=-1.766e+00;SOR=0.784;VQSLOD=7.50;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:11,5:16:99:160,0,338 2 65495571 rs60931828 T C 119.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.148;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.49;ReadPosRankSum=2.267;SB=-1.766e+00;SOR=0.784;VQSLOD=7.09;culprit=QD GT:AD:DP:GQ:PL 0/1:11,5:16:99:148,0,316 2 65495573 . A AC 132.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.81;RPA=1,2;RU=C;ReadPosRankSum=2.373;SB=-9.732e-01;SOR=1.302;STR;VQSLOD=8.11;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:12,5:17:99:170,0,463 2 65495887 rs268875 G A 861.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=3.087;HaplotypeScore=1.9198;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=-1.907;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-0.143;SB=-4.380e+02;SOR=1.148;VQSLOD=0.523;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,35:77:99:890,0,1111 2 65541214 rs147569215 C T 514.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.653;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-0.234;SB=-3.720e+02;SOR=0.646;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 0/1:24,23:47:99:543,0,573 2 65559027 rs2271198 A G 861.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.848;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.955;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-1.093;SB=-4.230e+02;SOR=0.491;VQSLOD=9.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,36:75:99:890,0,1067 2 65561392 rs4671658 C T 759.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.850;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=1.998;HaplotypeScore=2.9652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=-0.096;SB=-5.120e+02;SOR=0.470;VQSLOD=9.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,33:69:99:788,0,921 2 65604914 rs268120 A G 656.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-7.497e+01;SOR=3.716;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:51:685,51,0 2 65894369 rs2003201 T C 395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.873;HaplotypeScore=6.3205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=-0.409;SB=-2.300e+02;SOR=0.680;VQSLOD=5.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,18:40:99:424,0,485 2 66669850 . C T 296.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.571;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.37;ReadPosRankSum=1.230;SB=-1.765e+00;SOR=1.244;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 0/1:14,10:24:99:325,0,461 2 66735880 . A G 209.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.98;ReadPosRankSum=-1.555;SB=-1.765e+00;SOR=2.030;VQSLOD=4.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,8:15:99:238,0,202 2 66795906 rs112723259 T C 1161.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=1.646;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-0.747;SB=-6.870e+02;SOR=0.463;VQSLOD=8.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,52:105:99:1190,0,1416 2 66798282 rs2861108 G T 750.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.21;SB=-7.997e+01;SOR=3.816;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:779,63,0 2 67630980 rs3770657 G A 1157.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.975;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=1.723;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=-0.506;SB=-5.110e+02;SOR=0.939;VQSLOD=8.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,42:90:99:1186,0,1302 2 67632125 rs3770655 C T 576.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.735;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.447;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=-1.457;SB=-3.080e+02;SOR=0.684;VQSLOD=5.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,22:50:99:605,0,806 2 67637196 rs1569 G A 2190.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2174;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-7.970e+02;SOR=1.897;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2219,163,0 2 68352515 rs6742154 A C 1188.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.433;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=3.171;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=-0.946;SB=-5.160e+02;SOR=0.399;VQSLOD=9.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,42:82:99:1217,0,1065 2 68358341 rs62145930 T C 1788.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-5.540e+02;SOR=1.981;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1817,132,0 2 68358653 rs17035004 T C 652.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8517;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.64;SB=-1.175e+02;SOR=3.056;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:681,54,0 2 68385097 rs2044693 A G 5416.77 PASS AC=2;AF=1.00;AN=2;DB;DP=177;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-3.190e+03;SOR=0.704;VQSLOD=5.78;culprit=DP GT:AD:DP:GQ:PL 1/1:0,177:177:99:5445,409,0 2 68388823 rs1137930 A G 2176.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-1.119e+03;SOR=1.148;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:73:99:2205,160,0 2 68388972 . T TA 54.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQ0=0;MQRankSum=0.000;QD=2.11;RPA=12,13;RU=A;ReadPosRankSum=0.700;SB=-1.773e+00;SOR=0.399;STR;VQSLOD=7.36;culprit=QD GT:AD:DP:GQ:PL 0/1:20,6:34:92:92,0,388 2 68389276 . G GA 1358.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.416;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.64;RPA=10,11;RU=A;ReadPosRankSum=0.884;SB=-2.400e+02;SOR=1.903;STR;VQSLOD=7.82;culprit=FS GT:AD:DP:GQ:PL 1/1:1,50:51:99:1396,128,0 2 68389481 rs3217588 CTT C 8430.73 PASS AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.55;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-3.534e+03;SOR=1.051;VQSLOD=6.24;culprit=DP GT:AD:DP:GQ:PL 1/1:0,154:157:99:8468,463,0 2 68400708 . A AT 98.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.59;RPA=22,23;RU=T;ReadPosRankSum=0.000;SB=0.00;SOR=1.609;STR;VQSLOD=8.13;culprit=QD GT:AD:DP:GQ:PL 0/1:4,9:28:36:136,0,36 2 68415767 rs687 G A 2333.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.46;SB=-1.317e+03;SOR=1.101;VQSLOD=5.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2362,172,0 2 68444171 rs35225743 C CACGCAG,CACACGCAG 3583.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=62.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.11;SB=-1.417e+03;SOR=1.542;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/2:0,18,15:40:99:3621,609,489,709,0,589 2 68483396 rs7593613 A T 557.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.86;SB=0.00;SOR=5.670;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:586,48,0 2 68511506 rs5831925 GA G 512.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;DB;DP=32;ExcessHet=3.0103;FS=2.296;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=0.537;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.09;RPA=12,11;RU=A;ReadPosRankSum=-1.504;SB=-1.370e+02;SOR=1.721;STR;VQSLOD=0.274;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,25:32:52:550,0,52 2 68511584 rs735815 A G 1138.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.77;SB=-5.200e+02;SOR=1.501;VQSLOD=5.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:84:1167,84,0 2 68592315 rs3732046 A C 2214.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;SB=-5.810e+02;SOR=2.340;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2243,169,0 2 68592584 rs880668 T C 7620.77 PASS AC=2;AF=1.00;AN=2;DB;DP=246;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3813;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-3.773e+03;SOR=1.320;VQSLOD=4.75;culprit=DP GT:AD:DP:GQ:PL 1/1:0,245:246:99:7649,557,0 2 68592700 rs3770651 A G 2678.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.00;SB=-6.130e+02;SOR=2.774;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2707,196,0 2 68607947 rs3816281 G T 2105.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.35;SB=-1.278e+03;SOR=0.887;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2134,157,0 2 68615438 . A AG 2459.73 PASS AC=2;AF=1.00;AN=2;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.92;RPA=4,5;RU=G;SB=-6.220e+02;SOR=2.267;STR;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:68:99:2497,196,0 2 68620151 rs2289689 C T 384.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=0.00;SOR=4.977;VQSLOD=8.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:413,33,0 2 68620463 rs2289688 G A 928.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-3.077e+01;SOR=3.767;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:29:75:957,75,0 2 68622914 rs1063479 G A 2867.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-1.295e+03;SOR=1.364;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2896,214,0 2 68676008 rs4854531 A T 803.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.71;SB=-3.600e+02;SOR=1.609;VQSLOD=4.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:60:832,60,0 2 68740519 rs11691554 C T 265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.179;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=3.129;SB=-3.300e+01;SOR=1.609;VQSLOD=7.92;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,10:15:99:294,0,162 2 68753240 rs35002937 T A 414.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.541;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=-0.981;SB=-1.300e+02;SOR=0.807;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:8,16:24:99:443,0,186 2 68756367 rs144060986 C T 575.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.412;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.561;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.341;SB=-1.390e+02;SOR=0.385;VQSLOD=9.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,21:44:99:604,0,722 2 68762501 rs13413327 G A 479.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=5.369;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.38;ReadPosRankSum=0.690;SB=-1.830e+02;SOR=1.008;VQSLOD=5.41;culprit=QD GT:AD:DP:GQ:PL 0/1:45,20:65:99:508,0,1033 2 68765205 rs13404469 C T 1010.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.774;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.787;HaplotypeScore=3.7611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=-0.883;SB=-4.430e+02;SOR=0.577;VQSLOD=9.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,41:103:99:1039,0,1829 2 68794528 rs6751531 G T 845.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.134;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.410;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=0.145;SB=-2.630e+02;SOR=1.143;VQSLOD=7.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,32:59:99:874,0,696 2 69002281 rs11685672 C G 909.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.381;HaplotypeScore=1.9984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=0.422;SB=-4.150e+02;SOR=0.416;VQSLOD=9.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,32:56:99:938,0,647 2 69002760 rs10445945 C T 1146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=1.767;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.172;SB=-6.110e+02;SOR=0.500;VQSLOD=9.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,44:89:99:1175,0,1185 2 69009304 rs2271834 C T 160.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.992;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.93;ReadPosRankSum=0.861;SB=-2.701e+01;SOR=1.230;VQSLOD=9.21;culprit=QD GT:AD:DP:GQ:PL 0/1:11,7:18:99:189,0,326 2 69014850 rs114218047 T C 553.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.584;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.191;SB=-6.500e+01;SOR=0.638;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:26,18:44:99:582,0,720 2 69034847 rs3749128 C T 67.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.78;ReadPosRankSum=0.000;SB=-4.276e+01;SOR=0.078;VQSLOD=9.28;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:96:96,0,205 2 69043264 rs67399232 CT C 170.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;DB;DP=32;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.51;RPA=11,10;RU=T;ReadPosRankSum=-0.165;SB=-3.000e+01;SOR=1.230;STR;VQSLOD=5.51;culprit=QD GT:AD:DP:GQ:PL 0/1:20,11:32:99:208,0,487 2 69043266 rs78107572 T A 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.630;HaplotypeScore=6.2601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.75;ReadPosRankSum=0.229;SB=-5.500e+01;SOR=1.059;VQSLOD=5.54;culprit=QD GT:AD:DP:GQ:PL 0/1:22,11:33:99:317,0,634 2 69043539 rs2271832 G C 199.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.831;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=0.523;SB=-5.150e-01;SOR=2.093;VQSLOD=6.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,7:21:99:228,0,409 2 69045158 rs10197806 C A 301.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.311;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.026;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.88;ReadPosRankSum=-0.816;SB=-6.800e+01;SOR=0.307;VQSLOD=9.82;culprit=QD GT:AD:DP:GQ:PL 0/1:21,13:34:99:330,0,665 2 69046719 rs17036006 G A 694.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.671;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.552;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=0.561;SB=-8.900e+01;SOR=1.321;VQSLOD=6.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,23:46:99:723,0,641 2 69049941 rs10177248 T C 630.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.177;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=-0.778;SB=-3.330e+02;SOR=0.474;VQSLOD=9.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,21:43:99:659,0,648 2 69052991 rs2311421 A G 410.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.427;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=0.269;SB=-2.601e+01;SOR=0.963;VQSLOD=10.23;culprit=FS GT:AD:DP:GQ:PL 0/1:12,15:27:99:439,0,326 2 69093312 rs2231344 A G 1499.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.212;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=1.421;SB=-8.340e+02;SOR=0.709;VQSLOD=9.00;culprit=FS GT:AD:DP:GQ:PL 0/1:71,56:127:99:1528,0,1947 2 69173570 rs1128272 C T 926.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.217;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=0.665;SB=-3.870e+02;SOR=0.653;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:35,37:72:99:955,0,941 2 69180161 rs7561266 T A 692.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.726;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.72;ReadPosRankSum=-1.464;SB=-7.101e+01;SOR=0.872;VQSLOD=9.88;culprit=FS GT:AD:DP:GQ:PL 0/1:13,24:37:99:721,0,372 2 69201501 rs4575760 G A 1034.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-1.513e+02;SOR=3.477;VQSLOD=7.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:32:81:1063,81,0 2 69201894 rs4417751 C T 722.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.992;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=-0.825;SB=-2.330e+02;SOR=0.509;VQSLOD=10.11;culprit=FS GT:AD:DP:GQ:PL 0/1:33,28:61:99:751,0,874 2 69201982 rs4430980 T C 187.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.78;ReadPosRankSum=1.693;SB=0.00;SOR=1.085;VQSLOD=8.80;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:216,0,112 2 69204629 rs35624281 T C 168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.046;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.67;ReadPosRankSum=-2.732;SB=-8.700e+01;SOR=0.223;VQSLOD=8.10;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:14,8:22:99:197,0,402 2 69204671 rs9808077 A T 1336.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.42;SB=-3.930e+02;SOR=2.191;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1365,102,0 2 69205023 rs146210841 TAC T 309.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.16;ReadPosRankSum=-0.269;SB=-5.776e+01;SOR=0.399;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:12:99:347,0,189 2 69205942 rs13424275 C T 587.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-0.928;SB=-2.300e+02;SOR=0.617;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:31,23:55:99:616,0,854 2 69206143 rs79011846 G A 338.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.446;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.786;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=0.526;SB=-2.302e+01;SOR=1.214;VQSLOD=7.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,13:29:99:367,0,470 2 69207258 rs80093641 G A 439.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.59;ReadPosRankSum=-0.233;SB=-1.420e+02;SOR=0.892;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:8,17:25:99:468,0,223 2 69207766 rs73934215 A G 535.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.970;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.974;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=-0.694;SB=-2.601e+01;SOR=1.528;VQSLOD=5.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,19:47:99:564,0,868 2 69207987 rs73934216 A G 1105.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.650;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=3.552;HaplotypeScore=2.5802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-0.460;SB=-1.990e+02;SOR=1.270;VQSLOD=7.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,38:85:99:1134,0,1312 2 69240651 rs28365986 G A 309.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.978;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.573;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=-0.982;SB=-9.300e+01;SOR=1.161;VQSLOD=7.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,13:31:99:338,0,559 2 69272116 rs11126214 C T 202.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.811;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=-0.605;SB=-1.000e+02;SOR=0.368;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:231,0,290 2 69297622 rs4591376 C T 1150.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.07;SB=-6.480e+02;SOR=1.075;VQSLOD=5.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:87:1179,87,0 2 69298817 rs13030844 T C 1146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.633;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=7.497;HaplotypeScore=2.7894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-0.637;SB=-7.110e+02;SOR=0.235;VQSLOD=8.26;culprit=FS GT:AD:DP:GQ:PL 0/1:40,46:86:99:1175,0,1072 2 69317925 rs4854546 G A 2697.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.31;SB=-1.662e+03;SOR=0.809;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2726,199,0 2 69318129 rs4241348 T G 733.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.35;SB=-1.175e+02;SOR=3.258;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:57:762,57,0 2 69330284 rs4241349 G A 561.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;SB=0.00;SOR=5.670;VQSLOD=7.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:590,48,0 2 69351621 rs11126217 T A 156.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.565;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=0.126;SB=0.00;SOR=0.473;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:185,0,245 2 69362161 rs11903639 C T 1333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=1.709;HaplotypeScore=2.7258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-0.919;SB=-6.000e+02;SOR=1.005;VQSLOD=8.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,52:98:99:1362,0,1176 2 69362262 rs73934746 C G 1086.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.910;HaplotypeScore=3.7981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=1.200;SB=-4.870e+02;SOR=1.035;VQSLOD=7.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,44:76:99:1115,0,817 2 69362407 rs73934747 C A 168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-1.016;SB=0.00;SOR=0.693;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:197,0,211 2 69397157 rs10191848 G A 129.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=0.312;SB=0.00;SOR=0.446;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:158,0,255 2 69398263 rs4299364 G A 492.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.007;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=0.000;SB=-1.570e+02;SOR=0.671;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:30,19:49:99:521,0,869 2 69409029 rs6749826 C A 2543.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.20;SB=-7.620e+02;SOR=2.103;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2572,193,0 2 69420591 . T TCTCA 1060.74 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.775;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=64.03;MQ0=0;MQRankSum=1.526;POSITIVE_TRAIN_SITE;QD=31.82;ReadPosRankSum=0.628;SB=-2.280e+02;SOR=1.609;VQSLOD=3.37;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:3,22:26:29:1098,29,0 2 69420596 rs7584057 T C 762.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=18.9925;MLEAC=2;MLEAF=1.00;MQ=63.82;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.67;SB=-2.031e+02;SOR=2.303;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:57:791,57,0 2 69553375 rs201330278 GA G 218.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;DB;DP=39;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.25;RPA=13,12;RU=A;ReadPosRankSum=-0.576;SB=-6.500e+01;SOR=1.270;STR;VQSLOD=4.28;culprit=QD GT:AD:DP:GQ:PL 0/1:20,15:39:99:256,0,371 2 69565345 rs10164798 T C 49.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.52;ReadPosRankSum=1.834;SB=0.00;SOR=0.180;VQSLOD=9.18;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:78:78,0,274 2 69565844 rs116730412 A T 83.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.44;ReadPosRankSum=-0.444;SB=0.00;SOR=0.223;VQSLOD=8.15;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:99:112,0,314 2 69573029 rs6722492 T C 532.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.753;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.087;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=-1.689;SB=-3.370e+02;SOR=0.528;VQSLOD=8.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,22:49:99:561,0,719 2 69586293 rs6546505 A C 477.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.261;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=0.347;SB=-1.800e+02;SOR=0.784;VQSLOD=9.91;culprit=FS GT:AD:DP:GQ:PL 0/1:15,19:34:99:506,0,340 2 69586370 rs67760762 A G 703.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.353;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-1.497;SB=-4.310e+02;SOR=0.640;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:21,27:48:99:732,0,459 2 69614161 rs6720415 A G 274.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.412;HaplotypeScore=3.4987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.33;ReadPosRankSum=-0.841;SB=-8.500e+01;SOR=1.531;VQSLOD=5.85;culprit=QD GT:AD:DP:GQ:PL 0/1:22,11:33:99:303,0,568 2 69626332 rs62135769 A T 741.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.911;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=18.6609;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-1.669;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=-0.160;SB=-4.700e+01;SOR=0.929;VQSLOD=3.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,27:65:99:770,0,1134 2 69642572 rs4328678 T C 222.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.952;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=7.830;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=0.500;SB=-9.732e-01;SOR=3.407;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:251,0,151 2 69659126 rs4453725 A T 942.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.530;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.869;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=0.913;SB=-3.120e+02;SOR=0.889;VQSLOD=7.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,36:95:99:971,0,1573 2 69688631 . CA C 199.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456;DP=42;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.87;RPA=16,15;RU=A;ReadPosRankSum=-1.006;SB=-1.110e+02;SOR=0.297;STR;VQSLOD=7.03;culprit=QD GT:AD:DP:GQ:PL 0/1:24,17:42:99:237,0,448 2 69693006 rs9309428 C T 4614.77 PASS AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-2.809e+03;SOR=0.792;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,147:147:99:4643,343,0 2 69710027 . A G 90.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.98;ReadPosRankSum=-0.140;SB=0.00;SOR=0.368;VQSLOD=8.01;culprit=QD GT:AD:DP:GQ:PL 0/1:8,5:13:99:119,0,268 2 69734472 . C T 267.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.525;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.37;ReadPosRankSum=-1.052;SB=-8.500e+01;SOR=0.631;VQSLOD=8.11;culprit=QD GT:AD:DP:GQ:PL 0/1:20,12:32:99:296,0,552 2 69741854 rs6715776 T G 1137.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-6.860e+02;SOR=0.804;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:84:1166,84,0 2 69747817 rs2312211 G C 378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.078;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.61;ReadPosRankSum=0.671;SB=-9.900e+01;SOR=0.807;VQSLOD=8.97;culprit=QD GT:AD:DP:GQ:PL 0/1:28,16:44:99:407,0,756 2 69757291 rs3732271 A G 520.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.768;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-0.562;SB=-1.520e+02;SOR=0.527;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 0/1:19,20:39:99:549,0,559 2 69759415 rs2276687 G A 628.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.990;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.96;ReadPosRankSum=-0.258;SB=-1.690e+02;SOR=0.446;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:8,22:30:99:657,0,244 2 69771484 rs3771544 C T 793.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.905;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.80;ReadPosRankSum=1.097;SB=-2.730e+02;SOR=0.601;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:49,32:81:99:822,0,1333 2 69771718 . C T 1070.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.818;DP=81;Dels=0.00;ExcessHet=3.0103;FS=3.471;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.22;ReadPosRankSum=-0.417;SB=-4.620e+02;SOR=0.325;VQSLOD=8.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,44:81:99:1099,0,1064 2 69784278 rs3821277 T C 123.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-0.349;SB=0.00;SOR=0.551;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:152,0,207 2 69869901 rs79643475 A G 913.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.262;DB;DP=57;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.6314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.61;ReadPosRankSum=-1.206;SB=-3.400e+02;SOR=0.752;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:24,31:56:99:942,0,555 2 69870217 . A ATT 170.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=1.591;QD=8.13;RPA=24,26;RU=T;ReadPosRankSum=-0.775;SB=-4.900e+01;SOR=0.582;STR;VQSLOD=1.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,10:25:99:208,0,232 2 69870301 rs1396793 C A 51.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.71;ReadPosRankSum=-0.361;SB=-1.765e+00;SOR=0.283;VQSLOD=9.15;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:80:80,0,250 2 70187664 . G T 284.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.016;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.94;ReadPosRankSum=-0.957;SB=-2.901e+01;SOR=0.914;VQSLOD=8.47;culprit=FS GT:AD:DP:GQ:PL 0/1:10,12:22:99:313,0,275 2 70315448 rs12319 A T 971.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=-0.418;SB=-5.180e+02;SOR=0.622;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:42,40:82:99:1000,0,1146 2 70406524 rs112099363 G C 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=-0.930;SB=0.00;SOR=1.085;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:203,0,136 2 70502930 rs17005439 A G 364.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=0.00;SOR=4.804;VQSLOD=5.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:393,30,0 2 70676639 rs538118 A G 678.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.873;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=1.093;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=-0.599;SB=-1.830e+02;SOR=0.962;VQSLOD=7.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,28:69:99:707,0,1146 2 70676769 rs71710818 GA G 1049.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.41;RPA=9,8;RU=A;ReadPosRankSum=1.577;SB=-4.780e+02;SOR=0.758;STR;VQSLOD=8.00;culprit=FS GT:AD:DP:GQ:PL 0/1:43,49:99:99:1087,0,1011 2 70677994 rs2166975 G A 674.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.343;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.914;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.85;ReadPosRankSum=-0.027;SB=-2.680e+02;SOR=0.940;VQSLOD=7.00;culprit=QD GT:AD:DP:GQ:PL 0/1:57,29:86:99:703,0,1522 2 70678173 rs3732249 C A 387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.298;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=5.550;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=-1.056;SB=-5.000e+01;SOR=1.773;VQSLOD=5.52;culprit=FS GT:AD:DP:GQ:PL 0/1:26,15:41:99:416,0,729 2 70678176 rs3732248 G A 343.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.043;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.565;HaplotypeScore=3.3382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.59;ReadPosRankSum=-1.258;SB=-5.200e+01;SOR=1.581;VQSLOD=5.57;culprit=QD GT:AD:DP:GQ:PL 0/1:25,15:40:99:372,0,697 2 70678265 rs10189245 C T 30.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.40;ReadPosRankSum=0.000;SB=0.00;SOR=0.223;VQSLOD=9.10;culprit=QD GT:AD:DP:GQ:PL 0/1:5,2:10:59:59,0,84 2 70679067 rs3771522 G A 792.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.645;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.683;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=0.200;SB=-3.090e+02;SOR=0.332;VQSLOD=9.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,31:57:99:821,0,746 2 70680211 rs112692567 CT C 1305.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.627;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.32;ReadPosRankSum=-0.712;SB=-3.890e+02;SOR=0.578;VQSLOD=8.75;culprit=FS GT:AD:DP:GQ:PL 0/1:24,32:56:99:1343,0,1029 2 70683753 rs2278791 T C 241.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.041;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=5.814;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.07;ReadPosRankSum=0.919;SB=-2.657e-01;SOR=2.564;VQSLOD=6.05;culprit=FS GT:AD:DP:GQ:PL 0/1:16,8:24:99:270,0,462 2 70692557 rs3732247 C T 96.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.688;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.91;ReadPosRankSum=-1.960;SB=-7.000e+01;SOR=0.160;VQSLOD=8.87;culprit=QD GT:AD:DP:GQ:PL 0/1:8,6:14:99:125,0,292 2 70905099 rs2902577 T G 1973.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-1.673e+02;SOR=4.615;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:2002,147,0 2 70906115 rs2074815 C A 1348.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.512;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=2.688;HaplotypeScore=2.8275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=0.387;SB=-6.370e+02;SOR=1.034;VQSLOD=8.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,54:99:99:1377,0,1180 2 70915045 rs2270042 T C 46.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.34;ReadPosRankSum=-2.060;SB=0.00;SOR=0.188;VQSLOD=8.49;culprit=QD GT:AD:DP:GQ:PL 0/1:10,4:14:75:75,0,348 2 70915134 rs2074820 C G 299.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=3.141;HaplotypeScore=5.9816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.97;ReadPosRankSum=-0.065;SB=-8.000e+01;SOR=1.524;VQSLOD=5.29;culprit=QD GT:AD:DP:GQ:PL 0/1:29,14:44:99:328,0,830 2 70915320 rs7340254 T A 272.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.036;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.49;ReadPosRankSum=-0.512;SB=-5.900e+01;SOR=0.813;VQSLOD=8.79;culprit=QD GT:AD:DP:GQ:PL 0/1:27,15:42:99:301,0,723 2 70915323 rs7340145 C T 353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.230;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.84;ReadPosRankSum=-0.908;SB=-1.800e+02;SOR=0.534;VQSLOD=9.15;culprit=QD GT:AD:DP:GQ:PL 0/1:25,15:40:99:382,0,729 2 70915347 rs7340146 C T 244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.543;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.44;ReadPosRankSum=-1.057;SB=-1.270e+02;SOR=0.555;VQSLOD=9.85;culprit=QD GT:AD:DP:GQ:PL 0/1:18,11:29:99:273,0,620 2 70917768 rs12691192 C T 740.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.343;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=4.591;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=0.633;SB=-1.090e+02;SOR=1.445;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 0/1:30,26:56:99:769,0,846 2 70917812 rs10084293 C T 2706.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-1.042e+03;SOR=1.694;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2735,202,0 2 70919345 rs2074821 A G 530.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.210;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=3.763;HaplotypeScore=4.3064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-1.341;SB=-5.500e+01;SOR=1.609;VQSLOD=6.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,20:43:99:559,0,664 2 70933636 rs2287096 T C 254.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.709;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=0.776;SB=-6.700e+01;SOR=0.818;VQSLOD=10.35;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:283,0,230 2 70933659 rs11682965 T A 128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.804;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=-2.076;SB=-4.076e+01;SOR=0.093;VQSLOD=9.59;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,5:12:99:157,0,243 2 70995129 rs2287097 G A 648.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=2.356;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=0.340;SB=-3.320e+02;SOR=0.382;VQSLOD=9.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,24:58:99:677,0,944 2 70995217 rs2287098 A T 387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.706;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=-0.403;SB=-3.976e+01;SOR=0.299;VQSLOD=9.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,13:23:99:416,0,320 2 71012604 rs7566541 G A 1286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.729;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-0.961;SB=-7.800e+02;SOR=0.569;VQSLOD=9.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,51:106:99:1315,0,1411 2 71012734 rs7566476 C G 1150.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.143;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=3.171;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=-0.515;SB=-5.440e+02;SOR=0.399;VQSLOD=10.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,42:82:99:1179,0,1191 2 71043461 rs722896 C T 730.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=6.122;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=-0.976;SB=-4.590e+02;SOR=0.383;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 0/1:47,31:78:99:759,0,1237 2 71044211 rs2075221 C T 962.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.914;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=1.736;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=-2.333;SB=-5.320e+02;SOR=0.511;VQSLOD=9.06;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:54,40:94:99:991,0,1368 2 71047410 rs35637981 C G 758.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.347;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=8.809;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=-1.031;SB=-3.308e+02;SOR=0.090;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 0/1:15,31:46:99:787,0,451 2 71058226 rs2080390 C T 695.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.170;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=1.824;HaplotypeScore=16.0086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.73;ReadPosRankSum=-0.399;SB=-3.300e+02;SOR=0.907;VQSLOD=6.91;culprit=QD GT:AD:DP:GQ:PL 0/1:59,31:91:99:724,0,1204 2 71058835 rs741326 A G 1004.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.865;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=1.993;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-1.947;SB=-4.470e+02;SOR=0.470;VQSLOD=9.70;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:41,40:81:99:1033,0,1123 2 71060936 rs17718987 G C 1597.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.258;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=2.104;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=1.087;SB=-1.016e+03;SOR=0.826;VQSLOD=7.09;culprit=DP GT:AD:DP:GQ:PL 0/1:73,67:140:99:1626,0,2003 2 71062648 rs10489990 G A 1480.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.328;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=-0.470;SB=-4.540e+02;SOR=0.662;VQSLOD=9.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,55:88:99:1509,0,875 2 71062833 . G GC 7941.73 PASS AC=2;AF=1.00;AN=2;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.72;RPA=1,2;RU=C;SB=-3.786e+03;SOR=0.813;STR;VQSLOD=4.21;culprit=DP GT:AD:DP:GQ:PL 1/1:0,174:177:99:7979,524,0 2 71148045 rs7564382 C T 947.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.18;SB=-1.971e+02;SOR=2.753;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:75:976,75,0 2 71160421 rs2270262 G C 888.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.14;ReadPosRankSum=-0.356;SB=-1.020e+02;SOR=0.759;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:20,29:49:99:917,0,648 2 71162930 rs55655347 A G 179.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=0.980;SB=-7.201e+01;SOR=0.204;VQSLOD=9.63;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,6:13:99:208,0,223 2 71162996 rs11685700 A G 623.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.972;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.552;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-2.244;SB=-9.400e+01;SOR=1.130;VQSLOD=6.88;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:22,24:46:99:652,0,674 2 71163086 rs11681642 T C 1268.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.729;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=1.577;HaplotypeScore=3.7256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.296;SB=-7.520e+02;SOR=0.545;VQSLOD=9.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,56:106:99:1297,0,1160 2 71163225 rs759219 C T 743.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=5.680;HaplotypeScore=18.8147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=-0.338;SB=-3.900e+02;SOR=0.217;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 0/1:31,31:65:99:772,0,846 2 71170535 rs115289911 C T 159.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.949;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=0.380;SB=-1.765e+00;SOR=1.085;VQSLOD=9.34;culprit=FS GT:AD:DP:GQ:PL 0/1:10,6:16:99:188,0,314 2 71170807 rs2266918 C T 657.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.210;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=-0.792;SB=-2.040e+02;SOR=1.091;VQSLOD=7.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,26:49:99:686,0,543 2 71175511 . G GAA 1065.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.65;RPA=4,6;RU=A;ReadPosRankSum=-0.074;SB=-4.450e+02;SOR=0.623;STR;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:34,30:68:99:1103,0,1246 2 71175552 . T TG 1246.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.39;RPA=4,5;RU=G;ReadPosRankSum=-1.583;SB=-5.530e+02;SOR=0.653;STR;VQSLOD=7.64;culprit=FS GT:AD:DP:GQ:PL 0/1:41,40:82:99:1284,0,1225 2 71185391 rs967063 A C 2348.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;DB;DP=177;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.283;SB=-1.181e+03;SOR=0.626;VQSLOD=7.77;culprit=DP GT:AD:DP:GQ:PL 0/1:88,89:177:99:2377,0,2411 2 71186382 rs17006573 G A 826.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=1.045;HaplotypeScore=2.6147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-0.772;SB=-3.040e+02;SOR=0.558;VQSLOD=9.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,32:64:99:855,0,911 2 71188315 rs4852733 G A 361.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.403;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=-0.529;SB=0.00;SOR=0.874;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:10,12:22:99:390,0,334 2 71190384 rs2072462 C T 1382.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=1.683;HaplotypeScore=4.5244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=2.374;SB=-8.690e+02;SOR=0.453;VQSLOD=9.12;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:43,55:98:99:1411,0,996 2 71190545 rs2072463 G A 550.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.376;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=-0.434;SB=-2.830e+02;SOR=0.399;VQSLOD=10.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,18:33:99:579,0,433 2 71191777 rs2270263 C T 431.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.138;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.00;ReadPosRankSum=1.602;SB=-2.150e+02;SOR=0.538;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:33,15:48:99:460,0,1035 2 71205976 rs1115049 A G 915.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-2.900e+02;SOR=1.863;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:944,72,0 2 71208844 rs10209944 A G 720.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.32;SB=-2.391e+02;SOR=1.828;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:749,54,0 2 71211989 rs3796099 A G 6754.77 PASS AC=2;AF=1.00;AN=2;DB;DP=222;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.7896;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-3.827e+03;SOR=0.748;VQSLOD=4.55;culprit=DP GT:AD:DP:GQ:PL 1/1:0,222:222:99:6783,506,0 2 71212432 rs10460571 G T 295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.789;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=0.396;SB=0.00;SOR=0.540;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:12,10:22:99:324,0,411 2 71256424 rs400832 T C 709.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.523;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=-0.044;SB=-3.530e+02;SOR=0.628;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:21,25:46:99:738,0,547 2 71265187 . G T 1067.77 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.51;SB=-3.780e+02;SOR=1.885;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:81:1096,81,0 2 71282522 rs12993301 A G 735.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9467;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.66;SB=-3.660e+02;SOR=1.051;VQSLOD=6.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:57:764,57,0 2 71282550 rs60528487 A G 195.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.51;ReadPosRankSum=0.032;SB=-1.040e+02;SOR=0.892;VQSLOD=9.36;culprit=QD GT:AD:DP:GQ:PL 0/1:14,9:23:99:224,0,361 2 71282582 rs115758708 G A 252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=-0.498;SB=-1.410e+02;SOR=0.627;VQSLOD=8.62;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:281,0,160 2 71282604 rs111523839 A G 331.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=-0.725;SB=-1.610e+02;SOR=0.693;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:8,13:21:99:360,0,157 2 71282633 rs4852757 C T 493.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=-1.891e+02;SOR=1.609;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:39:522,39,0 2 71282696 rs1833352 G A 296.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-1.105e+02;SOR=1.609;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:325,24,0 2 71297982 rs2287327 C T 1451.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;DB;DP=162;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.96;ReadPosRankSum=-0.237;SB=-8.210e+02;SOR=0.757;VQSLOD=7.38;culprit=DP GT:AD:DP:GQ:PL 0/1:101,61:162:99:1480,0,2544 2 71300516 rs17616553 T C 803.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.663;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=3.516;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.27;ReadPosRankSum=0.265;SB=-2.580e+02;SOR=0.217;VQSLOD=9.41;culprit=SOR GT:AD:DP:GQ:PL 0/1:17,27:44:99:832,0,470 2 71305267 rs10187472 T C 466.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-4.176e+01;SOR=3.767;VQSLOD=8.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:495,36,0 2 71305456 rs6713 C T 2391.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.82;SB=-1.597e+03;SOR=0.717;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2420,175,0 2 71305812 rs77436320 A C 109.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.86;ReadPosRankSum=-0.489;SB=-2.801e+01;SOR=1.179;VQSLOD=8.75;culprit=QD GT:AD:DP:GQ:PL 0/1:10,6:16:99:138,0,279 2 71351779 rs58684004 T C 273.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.717;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-1.234;SB=0.00;SOR=0.616;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:12,11:23:99:302,0,388 2 71357417 rs2012479 C A 1219.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=8.369;HaplotypeScore=34.0639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=0.613;SB=-5.250e+02;SOR=0.194;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 0/1:39,43:87:99:1248,0,1047 2 71357634 rs1813348 C T 514.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.956;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=-0.474;SB=-2.700e+02;SOR=0.495;VQSLOD=10.37;culprit=FS GT:AD:DP:GQ:PL 0/1:14,19:33:99:543,0,349 2 71357710 rs981947 G C 494.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=1.822;SB=-2.360e+02;SOR=0.631;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:20,15:35:99:523,0,542 2 71360144 rs10199088 A C 380.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.736;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=7.140;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=-0.683;SB=-2.201e+02;SOR=0.098;VQSLOD=8.62;culprit=FS GT:AD:DP:GQ:PL 0/1:8,14:22:99:409,0,208 2 71360625 rs1813160 G T 61.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.246;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.43;ReadPosRankSum=1.968;SB=-4.100e+01;SOR=1.127;VQSLOD=4.48;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:90:90,0,359 2 71360723 rs1813159 A G 417.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=-2.071e+02;SOR=1.329;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:33:446,33,0 2 71360735 rs138875226 T TTCC 660.73 PASS AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.57;RPA=2,3;RU=TCC;SB=-2.253e+02;SOR=1.445;STR;VQSLOD=5.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:14:36:698,36,0 2 71361332 rs9941620 T G 1115.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.978;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=1.939;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=0.092;SB=-4.420e+02;SOR=0.471;VQSLOD=10.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,45:88:99:1144,0,1073 2 71365545 rs74417137 AATT A 252.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.27;RPA=2,1;RU=ATT;ReadPosRankSum=0.204;SB=0.00;SOR=1.085;STR;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:290,0,194 2 71365676 rs357756 G A 604.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.557;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.814;HaplotypeScore=2.7085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-0.136;SB=-1.520e+02;SOR=1.255;VQSLOD=7.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,23:45:99:633,0,705 2 71365805 rs79477128 A G 745.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=3.063;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=0.198;SB=-2.880e+02;SOR=1.085;VQSLOD=6.73;culprit=QD GT:AD:DP:GQ:PL 0/1:52,31:83:99:774,0,1316 2 71366957 rs3732240 C A 289.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.146;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.804;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-0.124;SB=-1.290e+02;SOR=0.368;VQSLOD=9.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,13:23:99:318,0,281 2 71375065 . A C 424.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.450;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=1.784;SB=-1.210e+02;SOR=0.428;VQSLOD=9.34;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:27,17:44:99:453,0,798 2 71376999 rs6574 G A 521.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.561;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.190;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.03;ReadPosRankSum=-0.309;SB=-3.030e+02;SOR=0.560;VQSLOD=7.84;culprit=QD GT:AD:DP:GQ:PL 0/1:42,23:66:99:550,0,1117 2 71405776 rs436793 C T 373.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.259;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.51;MQ0=0;MQRankSum=-0.641;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-0.971;SB=-1.250e+02;SOR=0.793;VQSLOD=2.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,14:27:99:402,0,382 2 71415479 rs357780 T C 504.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=0.00;SOR=5.283;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:533,39,0 2 71415875 rs8179641 C G 398.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.693;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=-0.052;SB=-5.600e+01;SOR=0.668;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:11,15:26:99:427,0,312 2 71417065 rs357777 G T 1859.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;SB=-7.410e+02;SOR=1.609;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1888,138,0 2 71417134 rs357776 C T 450.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.112;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=3.802;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.78;ReadPosRankSum=0.616;SB=-1.765e+00;SOR=2.303;VQSLOD=6.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,14:24:99:479,0,303 2 71503978 rs59596777 T C 254.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.794;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.494;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.49;ReadPosRankSum=0.683;SB=-1.070e+02;SOR=1.085;VQSLOD=6.59;culprit=QD GT:AD:DP:GQ:PL 0/1:20,10:30:99:283,0,561 2 71615571 rs2542529 C T 1442.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.79;SB=-3.000e+02;SOR=2.885;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1471,111,0 2 71620818 rs6741436 C T 1550.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-5.990e+02;SOR=1.755;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1579,117,0 2 71627539 rs3771371 C T 367.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.713;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.536;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-0.395;SB=-2.400e+02;SOR=0.240;VQSLOD=9.73;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,16:31:99:396,0,345 2 71633275 rs3732233 T C 861.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.192;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=2.056;SB=-5.100e+02;SOR=0.818;VQSLOD=8.03;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:47,38:85:99:890,0,1107 2 71633389 rs6714975 C T 666.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.958;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.032;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=1.196;SB=-2.570e+02;SOR=0.859;VQSLOD=7.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,28:62:99:695,0,921 2 71635931 rs12466025 G T 1049.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.81;SB=-3.150e+02;SOR=1.981;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:81:1078,81,0 2 71645828 rs4852783 G A 302.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.112;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.515;HaplotypeScore=1.8737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=0.161;SB=-1.100e+02;SOR=1.085;VQSLOD=7.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,13:28:99:331,0,432 2 71645890 rs4852784 G C 184.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=1.368;SB=0.00;SOR=1.085;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:213,0,132 2 71651708 . G GT 142.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;DP=12;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.89;RPA=9,10;RU=T;ReadPosRankSum=-1.154;SB=-1.770e+00;SOR=3.056;STR;VQSLOD=4.14;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:73:180,0,73 2 71651939 rs12613800 T A 928.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.616;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.934;SB=-4.520e+02;SOR=0.679;VQSLOD=8.93;culprit=FS GT:AD:DP:GQ:PL 0/1:38,33:71:99:957,0,855 2 71654175 rs1804020 G A 1679.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.944;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=5.878;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=-0.248;SB=-9.060e+02;SOR=0.796;VQSLOD=5.14;culprit=FS GT:AD:DP:GQ:PL 0/1:51,64:115:99:1708,0,1448 2 71708825 rs372225157 T TATCC 471.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.66;RPA=8,9;RU=ATCC;ReadPosRankSum=-0.126;SB=-6.576e+01;SOR=1.802;STR;VQSLOD=7.48;culprit=FS GT:AD:DP:GQ:PL 1/1:1,9:13:11:508,11,0 2 71796865 rs10205023 C G 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=-0.845;SB=-4.076e+01;SOR=0.269;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:309,0,216 2 71797176 rs10183967 A C 707.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.842;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.098;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=0.167;SB=-2.690e+02;SOR=0.509;VQSLOD=9.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,23:56:99:736,0,958 2 71797712 DYSF G A 299.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.131;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=0.467;SB=-6.900e+01;SOR=0.412;VQSLOD=10.35;culprit=FS GT:AD:DP:GQ:PL 0/1:15,11:26:99:328,0,412 2 71816602 rs3811611 G C 615.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.93;SB=0.00;SOR=5.670;VQSLOD=8.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:644,48,0 2 71817003 rs1473228 A G 620.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.49;SB=-4.276e+01;SOR=4.407;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:48:649,48,0 2 71817571 DYSF A T 399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.31;SB=-4.276e+01;SOR=3.611;VQSLOD=7.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:428,33,0 2 71828423 DYSF A T 1980.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.31;SB=-1.095e+02;SOR=5.136;VQSLOD=4.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:2009,157,0 2 71829821 DYSF G T 651.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;SB=-3.080e+02;SOR=1.127;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:51:680,51,0 2 71847621 . C T 622.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.134;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.081;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.04;ReadPosRankSum=0.220;SB=-2.080e+02;SOR=0.951;VQSLOD=5.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,27:62:99:651,0,959 2 71847943 rs12995778 C A 528.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.83;SB=-3.130e+02;SOR=1.022;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:42:557,42,0 2 71871039 DYSF A G 1664.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=-6.860e+02;SOR=1.697;VQSLOD=7.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1693,123,0 2 71871236 DYSF A G 707.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.74;SB=-4.276e+01;SOR=4.514;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:736,54,0 2 71891236 rs2303598 C T 171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=-1.831;SB=0.00;SOR=0.859;VQSLOD=10.07;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:200,0,169 2 71891361 DYSF C T 2399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-8.770e+02;SOR=1.905;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2428,181,0 2 71901286 rs2559081 C T 1512.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SB=-2.750e+02;SOR=3.160;VQSLOD=7.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1541,114,0 2 71906171 DYSF T C 2199.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.35;SB=-7.350e+02;SOR=2.105;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2228,166,0 2 71906278 DYSF A C 1578.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.731;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=1.316;HaplotypeScore=4.1920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=2.888;SB=-1.054e+03;SOR=0.673;VQSLOD=7.24;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:77,69:146:99:1607,0,1791 2 71907930 rs7558412 G T 319.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=0.00;SOR=4.804;VQSLOD=8.91;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,10:10:27:348,27,0 2 71909822 DYSF C T 385.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.019;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=1.146;SB=-8.600e+01;SOR=0.709;VQSLOD=10.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,15:34:99:414,0,468 2 72692272 rs35274285 A AAG 3641.73 PASS AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.56;RPA=1,2;RU=AG;SB=-6.940e+02;SOR=2.899;STR;VQSLOD=4.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:71:99:3679,211,0 2 72742083 . GAC G 2269.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=70;ExcessHet=3.0103;FS=3.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=34.39;RPA=13,12;RU=AC;ReadPosRankSum=2.654;SB=-2.891e+02;SOR=2.340;STR;VQSLOD=3.97;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 1/1:4,62:70:33:2217,33,0 2 73151231 rs1561247 C T 475.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.43;SB=-1.205e+02;SOR=2.833;VQSLOD=4.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:39:504,39,0 2 73215562 rs1370383 T C 281.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.912;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.462;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=-1.712;SB=-1.680e+02;SOR=0.446;VQSLOD=8.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,13:29:99:310,0,429 2 73226090 rs12233055 G A 1037.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.365;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=1.743;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=0.461;SB=-4.410e+02;SOR=0.951;VQSLOD=7.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,39:94:99:1066,0,1400 2 73226259 rs732180 A G 594.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.921;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.143;HaplotypeScore=3.5725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=-0.524;SB=-2.901e+01;SOR=1.532;VQSLOD=6.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,20:43:99:623,0,705 2 73226282 rs732179 T C 408.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.456;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=0.205;SB=-1.765e+00;SOR=1.730;VQSLOD=8.43;culprit=FS GT:AD:DP:GQ:PL 0/1:13,13:26:99:437,0,401 2 73280302 rs201769342 CG C 314.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=0.635;SB=-8.954e+01;SOR=0.929;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:7,14:21:99:352,0,183 2 73280451 rs370241423 A G 476.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.905;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.091;HaplotypeScore=1.3990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.17;ReadPosRankSum=-0.323;SB=-2.660e+02;SOR=0.519;VQSLOD=7.44;culprit=QD GT:AD:DP:GQ:PL 0/1:29,23:52:99:505,0,708 2 73285752 rs10180720 T A 1895.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.559;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.754;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=-0.914;SB=-5.930e+02;SOR=0.900;VQSLOD=7.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,68:124:99:1924,0,1432 2 73316540 rs3901273 A T 1184.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.880;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=1.581;HaplotypeScore=2.5338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=0.103;SB=-7.450e+02;SOR=0.625;VQSLOD=8.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,51:100:99:1213,0,1361 2 73339430 rs4143146 T G 1696.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-5.850e+02;SOR=2.024;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1725,135,0 2 73339708 rs1864488 G A 826.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.724;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=2.269;SB=-4.140e+02;SOR=0.794;VQSLOD=8.56;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:41,32:73:99:855,0,1177 2 73491683 rs4852916 G A 314.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.932;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.51;ReadPosRankSum=0.682;SB=-2.103e+01;SOR=1.371;VQSLOD=6.10;culprit=QD GT:AD:DP:GQ:PL 0/1:25,12:37:99:343,0,776 2 73613031 rs72319667 TGGAGGA T 474.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;DB;DP=13;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.26;RPA=13,11;RU=GGA;ReadPosRankSum=0.207;SB=-1.764e+00;SOR=2.093;STR;VQSLOD=6.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,7:13:99:512,0,320 2 73613341 rs11126399 G A 362.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=0.712;SB=-1.905e+01;SOR=1.140;VQSLOD=7.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,16:31:99:391,0,427 2 73649928 rs1881245 G A 545.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.435;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.19;ReadPosRankSum=1.564;SB=-1.060e+02;SOR=0.593;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 0/1:10,20:30:99:574,0,290 2 73650122 rs1881246 T A 542.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.839;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=0.947;SB=-1.440e+02;SOR=0.806;VQSLOD=8.31;culprit=FS GT:AD:DP:GQ:PL 0/1:37,21:58:99:571,0,1011 2 73651967 rs3813227 C T 945.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=3.106;HaplotypeScore=1.9328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.076;SB=-5.760e+02;SOR=0.451;VQSLOD=9.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,37:77:99:974,0,1030 2 73675019 rs66492706 CT C 476.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;DB;DP=38;ExcessHet=3.0103;FS=9.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;RPA=7,6;RU=T;ReadPosRankSum=-0.308;SB=-1.183e+02;SOR=0.039;STR;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 0/1:17,21:38:99:514,0,420 2 73675227 rs372423387 T TCTC 3446.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.80;RPA=1,2;RU=CTC;ReadPosRankSum=-0.133;SB=-1.618e+03;SOR=0.746;STR;VQSLOD=5.04;culprit=FS GT:AD:DP:GQ:PL 0/1:76,63:141:99:3484,0,4179 2 73675669 rs2037814 T G 2835.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-1.678e+03;SOR=0.859;VQSLOD=7.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2864,208,0 2 73675844 rs7598901 C T 944.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=1.782;HaplotypeScore=2.7995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=-0.057;SB=-5.390e+02;SOR=0.853;VQSLOD=7.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,38:86:99:973,0,1322 2 73677833 rs6546836 A G 1975.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.462;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-1.055;SB=-1.146e+03;SOR=0.706;VQSLOD=8.49;culprit=DP GT:AD:DP:GQ:PL 0/1:80,76:156:99:2004,0,2154 2 73677898 rs6546837 G C 2480.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.086;DB;DP=180;Dels=0.00;ExcessHet=3.0103;FS=2.614;HaplotypeScore=3.5464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=0.074;SB=-1.285e+03;SOR=1.005;VQSLOD=6.74;culprit=DP GT:AD:DP:GQ:PL 0/1:94,86:180:99:2509,0,2427 2 73679013 rs45608038 A G 1401.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.924;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=-0.027;SB=-6.830e+02;SOR=0.790;VQSLOD=8.03;culprit=FS GT:AD:DP:GQ:PL 0/1:59,50:109:99:1430,0,1518 2 73679280 rs6546838 A G 1565.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.643;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=2.162;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=-0.643;SB=-8.850e+02;SOR=0.941;VQSLOD=7.72;culprit=DP GT:AD:DP:GQ:PL 0/1:78,61:139:99:1594,0,2185 2 73679866 rs10496192 T C 1150.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.920;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=3.987;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-0.655;SB=-5.920e+02;SOR=1.121;VQSLOD=7.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,43:88:99:1179,0,1182 2 73679990 rs6724782 T A 1207.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.733;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-1.294;SB=-7.740e+02;SOR=0.590;VQSLOD=9.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,50:103:99:1236,0,1431 2 73680508 rs6546839 G C 1134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.139;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=3.097;HaplotypeScore=1.8154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=0.129;SB=-7.520e+02;SOR=0.650;VQSLOD=5.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,45:77:99:1163,0,810 2 73717567 rs2056486 G T 1001.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.152;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=1.791;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=1.116;SB=-6.510e+02;SOR=0.491;VQSLOD=9.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,41:83:99:1030,0,1212 2 73717656 rs10193972 A G 1051.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.525;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=4.170;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=-1.138;SB=-6.270e+02;SOR=0.360;VQSLOD=9.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,37:87:99:1080,0,1464 2 73746923 rs11884776 C T 289.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.140;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.737;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=2.029;SB=-1.360e+02;SOR=0.321;VQSLOD=9.50;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:15,13:28:99:318,0,418 2 73761881 rs3738848 G A 230.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.612;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=-0.391;SB=-2.901e+01;SOR=0.919;VQSLOD=9.21;culprit=FS GT:AD:DP:GQ:PL 0/1:12,9:21:99:259,0,353 2 73762236 rs10178678 A G 261.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.782;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=-0.317;SB=-7.000e+01;SOR=0.646;VQSLOD=9.89;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:290,0,198 2 73828310 rs1320374 T C 455.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=7.647;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=0.905;SB=-1.905e+01;SOR=2.833;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 0/1:16,16:32:99:484,0,411 2 73828538 rs1052161 G A 1191.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.766;HaplotypeScore=2.7478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-1.966;SB=-5.760e+02;SOR=0.548;VQSLOD=9.35;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:56,44:100:99:1220,0,1481 2 73829372 rs1052162 C T 820.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.036;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.54;ReadPosRankSum=-0.383;SB=-3.420e+02;SOR=0.594;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:51,35:86:99:849,0,1484 2 73851810 . C T 325.31 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=46.62;MQ0=3;MQRankSum=1.956;QD=18.07;ReadPosRankSum=0.694;SB=-2.508e+02;SOR=0.223;VQSLOD=1.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,14:18:1:351,0,1 2 73868328 rs13538 A G 2812.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.039;DB;DP=182;Dels=0.00;ExcessHet=3.0103;FS=2.729;HaplotypeScore=2.6616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=-0.985;SB=-9.630e+02;SOR=0.906;VQSLOD=6.81;culprit=DP GT:AD:DP:GQ:PL 0/1:91,91:182:99:2841,0,2431 2 73898118 rs7570683 C T 136.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.604;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.05;ReadPosRankSum=-0.683;SB=-7.101e+01;SOR=0.148;VQSLOD=9.36;culprit=QD GT:AD:DP:GQ:PL 0/1:10,7:17:99:165,0,327 2 73898359 rs4341964 G A 210.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.831;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=-0.089;SB=-3.400e+01;SOR=0.941;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:239,0,245 2 73899955 rs6725284 G T 1808.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.66;SB=-5.790e+02;SOR=2.041;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:60:99:1837,138,0 2 73900210 rs4637150 A G 946.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.65;SB=-1.851e+02;SOR=2.910;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:975,72,0 2 73900900 rs10206899 T C 460.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.004;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.174;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.07;ReadPosRankSum=1.845;SB=-1.765e+00;SOR=1.845;VQSLOD=5.45;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:13,14:27:99:489,0,368 2 73994074 rs2567599 G A 877.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.356;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=-1.637;SB=-2.960e+02;SOR=0.655;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:34,33:67:99:906,0,944 2 74035880 rs11675635 A G 397.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=8;POSITIVE_TRAIN_SITE;QD=15.30;SB=-3.180e+02;SOR=0.914;VQSLOD=3.44;culprit=FS GT:AD:DP:GQ:PL 1/1:6,20:26:30:426,30,0 2 74087290 rs1025424 T C 1139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.358;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=1.447;SB=-5.980e+02;SOR=0.744;VQSLOD=8.93;culprit=FS GT:AD:DP:GQ:PL 0/1:33,48:81:99:1168,0,880 2 74087298 rs2303987 A G 865.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.557;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.924;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-2.106;SB=-3.580e+02;SOR=0.513;VQSLOD=9.46;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:44,33:77:99:894,0,1159 2 74128361 rs1653258 T G 1644.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.57;SB=-4.390e+02;SOR=2.448;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1673,120,0 2 74128369 rs1632564 G A 1590.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-4.820e+02;SOR=2.348;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1619,123,0 2 74128391 rs1721241 G C 1918.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=-8.580e+02;SOR=1.574;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:1947,141,0 2 74128433 rs1050146 C T 2413.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.08;SB=-1.283e+03;SOR=1.112;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:84:99:2442,181,0 2 74128666 rs143078935 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGC T 3055.75 PASS AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.02;MQ0=0;QD=23.87;SB=0.00;SOR=4.407;VQSLOD=4.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,8:21:24:3093,24,0 2 74129474 rs1726025 T C 351.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.51;SB=0.00;SOR=4.804;VQSLOD=8.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:380,30,0 2 74129664 rs1653256 A G 2570.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.56;SB=-1.387e+03;SOR=1.166;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2599,196,0 2 74129712 rs1721243 C G 3572.77 PASS AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-2.032e+03;SOR=0.978;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,117:117:99:3601,259,0 2 74129895 rs1721244 G A 2214.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-8.090e+02;SOR=1.949;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2243,166,0 2 74135380 rs756127 G A 1596.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.73;SB=-3.600e+02;SOR=2.687;VQSLOD=3.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1625,123,0 2 74135732 rs702460 G A 406.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-1.911e+02;SOR=0.859;VQSLOD=7.13;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,11:11:33:435,33,0 2 74135797 rs702461 T C 605.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.65;SB=-1.593e+02;SOR=2.303;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:48:634,48,0 2 74135898 rs756128 A G 1528.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.80;ReadPosRankSum=-0.202;SB=-8.100e+02;SOR=1.179;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 1/1:2,53:55:73:1557,73,0 2 74140581 rs891699 A T 2334.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.85;SB=-2.690e+02;SOR=4.080;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2363,181,0 2 74140789 rs891698 T C 5218.77 PASS AC=2;AF=1.00;AN=2;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-2.459e+03;SOR=1.324;VQSLOD=5.45;culprit=DP GT:AD:DP:GQ:PL 1/1:0,163:163:99:5247,385,0 2 74140888 rs891697 A C 2441.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.88;SB=-4.890e+02;SOR=3.073;VQSLOD=4.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2470,178,0 2 74142164 rs35892339 GA G 420.73 PASS AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;RPA=5,4;RU=A;SB=-1.313e+02;SOR=1.765;STR;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:16:42:458,42,0 2 74143570 rs1653253 A C 777.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.75;SB=-4.176e+01;SOR=4.712;VQSLOD=7.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:806,60,0 2 74174145 rs940297 A G 505.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.61;SB=-1.245e+02;SOR=2.584;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:39:534,39,0 2 74185876 rs4777 A T 2586.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5314;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.06;SB=-1.330e+03;SOR=1.204;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2615,190,0 2 74230310 rs142058377 CGTGCGTGTGT C 3218.75 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;DB;DP=71;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=60.30;MQ0=0;MQRankSum=1.588;POSITIVE_TRAIN_SITE;QD=15.09;RPA=2,1;RU=GTGCGTGTGT;ReadPosRankSum=1.289;SB=-1.463e+03;SOR=0.436;STR;VQSLOD=0.233;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,29:71:99:3256,0,3965 2 74274559 . T A 1065.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;ExcessHet=3.0103;FS=5.268;HaplotypeScore=15.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.84;ReadPosRankSum=0.875;SB=-4.270e+02;SOR=0.138;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 0/1:33,44:82:99:1094,0,910 2 74326902 rs9309479 C T 374.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-7.897e+01;SOR=2.670;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:403,30,0 2 74362090 rs828879 A G 605.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.27;SB=-7.797e+01;SOR=3.383;VQSLOD=7.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:634,48,0 2 74372678 rs828888 A C 580.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.924;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=-0.232;SB=-9.700e+01;SOR=0.906;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:16,19:35:99:609,0,441 2 74374884 rs1667605 G A 121.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-0.303;SB=-6.800e+01;SOR=1.329;VQSLOD=8.91;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:150,0,100 2 74400503 rs35382378 G GT 68.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=-0.549;QD=5.73;RPA=22,23;RU=T;ReadPosRankSum=-1.359;SB=0.00;SOR=1.022;STR;VQSLOD=1.64;culprit=QD GT:AD:DP:GQ:PL 0/1:5,7:23:63:106,0,63 2 74400532 rs7559252 T C 100.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.11;MQ0=0;MQRankSum=-1.723;POSITIVE_TRAIN_SITE;QD=9.16;ReadPosRankSum=-0.820;SB=0.00;SOR=0.330;VQSLOD=3.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,4:11:99:129,0,230 2 74426038 rs1723285 G A 311.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.748;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=-0.744;SB=0.00;SOR=1.022;VQSLOD=10.43;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:19:99:340,0,272 2 74448655 rs7587117 T C 1137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.433;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.878;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.183;SB=-4.370e+02;SOR=0.911;VQSLOD=8.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,45:87:99:1166,0,1119 2 74466594 rs4853018 G A 726.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.496;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=2.058;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=-2.002;SB=-2.390e+02;SOR=0.963;VQSLOD=7.05;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:49,28:78:99:755,0,1227 2 74481944 . A AT 67.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=0.623;QD=4.52;RPA=16,17;RU=T;ReadPosRankSum=-0.508;SB=0.00;SOR=0.582;STR;VQSLOD=1.76;culprit=QD GT:AD:DP:GQ:PL 0/1:8,7:19:90:105,0,90 2 74534944 . T TG 463.73 PASS AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.25;RPA=1,2;RU=G;SB=-2.301e+02;SOR=0.859;STR;VQSLOD=5.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:501,33,0 2 74649916 rs200949812 TC T 362.73 PASS AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.67;RPA=5,4;RU=C;SB=-8.451e+01;SOR=2.584;STR;VQSLOD=5.91;culprit=QD GT:AD:DP:GQ:PL 1/1:0,16:16:47:400,47,0 2 74649921 rs11685929 C A 390.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9132;MLEAC=1;MLEAF=0.500;MQ=57.64;MQ0=0;MQRankSum=0.740;POSITIVE_TRAIN_SITE;QD=20.57;ReadPosRankSum=0.966;SB=-7.497e+01;SOR=0.610;VQSLOD=3.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,13:19:93:419,0,93 2 74669136 rs3732294 C A 171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=-0.337;SB=-5.600e+01;SOR=0.368;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:200,0,192 2 74687781 rs61733470 G A 1879.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.455;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7884;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=-0.171;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=0.016;SB=-9.170e+02;SOR=0.645;VQSLOD=0.100;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:84,72:156:99:1908,0,2384 2 74708756 rs115138061 C T 986.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.055;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=2.265;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-0.403;SB=-2.600e+02;SOR=1.050;VQSLOD=7.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,36:71:99:1015,0,1017 2 74720002 rs4853026 C G 615.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=37.16;SB=-2.051e+02;SOR=1.739;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:644,48,0 2 74725144 rs6546908 T C 5490.77 PASS AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-2.154e+03;SOR=1.756;VQSLOD=6.71;culprit=DP GT:AD:DP:GQ:PL 1/1:0,167:167:99:5519,406,0 2 74789693 rs116670856 T C 103.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=-1.393;SB=0.00;SOR=0.330;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:7,4:11:99:132,0,242 2 75061873 rs663504 C G 792.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.565;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.040;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=-1.037;SB=-4.190e+02;SOR=0.479;VQSLOD=9.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,33:58:99:821,0,600 2 75101650 rs370185725 G C 1552.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.819;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.749;HaplotypeScore=2.8184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.23;ReadPosRankSum=2.091;SB=-6.000e+02;SOR=0.599;VQSLOD=7.00;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:64,63:128:99:1581,0,1760 2 75105798 rs604112 A G 2958.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.24;SB=-1.489e+03;SOR=1.022;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2987,217,0 2 75113572 rs2306806 G A 2139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.744;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=6.640;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-0.309;SB=-9.920e+02;SOR=1.160;VQSLOD=5.82;culprit=DP GT:AD:DP:GQ:PL 0/1:87,83:170:99:2168,0,2252 2 75113657 rs2229626 C T 1481.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.713;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=1.500;HaplotypeScore=1.4972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.014;SB=-7.740e+02;SOR=0.525;VQSLOD=9.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,53:117:99:1510,0,1754 2 75113789 rs2229627 C G 1320.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=4.205;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=-0.747;SB=-7.520e+02;SOR=0.742;VQSLOD=5.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:75,57:133:99:1349,0,1971 2 75115108 rs10194657 A G 717.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.437;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-0.750;SB=-3.490e+02;SOR=0.689;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:33,30:63:99:746,0,892 2 75115379 rs2279429 C T 53.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.38;ReadPosRankSum=0.755;SB=0.00;SOR=0.223;VQSLOD=9.11;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:82:82,0,254 2 75116627 rs4853069 C T 544.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.451;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=0.106;SB=-2.910e+02;SOR=0.362;VQSLOD=9.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,23:57:99:573,0,879 2 75185856 rs12366 G T 882.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.899;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.090;SB=-1.470e+02;SOR=0.500;VQSLOD=10.16;culprit=FS GT:AD:DP:GQ:PL 0/1:33,33:66:99:911,0,984 2 75186337 rs2287102 A G 124.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.93;ReadPosRankSum=1.036;SB=-6.000e+01;SOR=0.582;VQSLOD=9.72;culprit=QD GT:AD:DP:GQ:PL 0/1:13,5:18:99:153,0,357 2 75187573 rs3771799 G A 779.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-1.961e+02;SOR=2.670;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:63:808,63,0 2 75276429 rs881 C G 263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.101;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=8.820;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=-0.564;SB=-2.601e+01;SOR=3.056;VQSLOD=5.84;culprit=FS GT:AD:DP:GQ:PL 0/1:8,9:17:99:292,0,207 2 75873733 rs2286238 T C 374.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.671;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=-1.651;SB=-3.876e+01;SOR=0.257;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:11,13:24:99:403,0,376 2 75882156 . CT C 132.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.99;RPA=21,20;RU=T;ReadPosRankSum=-0.248;SB=-5.700e+01;SOR=0.760;STR;VQSLOD=9.15;culprit=QD GT:AD:DP:GQ:PL 0/1:8,11:19:99:170,0,134 2 75915015 rs201521372 C G 1069.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.63;ReadPosRankSum=0.883;SB=-7.510e+02;SOR=0.616;VQSLOD=7.92;culprit=FS GT:AD:DP:GQ:PL 0/1:47,45:92:99:1098,0,1135 2 76976143 rs146142597 C G 358.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=-1.792;SB=-9.900e+01;SOR=0.392;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:14,14:28:99:387,0,394 2 77749304 rs149437306 C A 1201.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.026;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-0.437;SB=-7.000e+02;SOR=0.735;VQSLOD=8.45;culprit=FS GT:AD:DP:GQ:PL 0/1:42,52:94:99:1230,0,1220 2 79252950 rs369221 A G 499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.39;SB=0.00;SOR=5.283;VQSLOD=8.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:528,39,0 2 79253029 rs385742 T G 444.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.547;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.27;ReadPosRankSum=-3.235;SB=-6.000e+01;SOR=0.646;VQSLOD=8.47;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:31,17:48:99:473,0,909 2 79253150 rs369967 A G 2322.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.463;DB;DP=197;Dels=0.00;ExcessHet=3.0103;FS=3.351;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=-0.128;SB=-1.081e+03;SOR=1.004;VQSLOD=6.82;culprit=DP GT:AD:DP:GQ:PL 0/1:103,94:197:99:2351,0,2723 2 79253375 rs425846 C T 827.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.318;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=2.198;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=-0.665;SB=-2.050e+02;SOR=1.104;VQSLOD=7.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,31:77:99:856,0,1250 2 79253764 rs1375052 C G 305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.981;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-1.521;SB=-6.400e+01;SOR=0.551;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:15,13:28:99:334,0,455 2 79254261 rs452267 T C 830.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-2.381e+02;SOR=2.124;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:63:859,63,0 2 79255122 rs2290078 C A 225.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.320;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=15.849;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=-2.559;SB=-1.430e+02;SOR=0.008;VQSLOD=2.75;culprit=FS GT:AD:DP:GQ:PL 0/1:12,9:21:99:254,0,401 2 79255325 rs2290079 G C 627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.929;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.226;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=-0.245;SB=-2.840e+02;SOR=1.101;VQSLOD=7.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,24:43:99:656,0,487 2 79255426 rs383969 G C 1353.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-5.750e+02;SOR=1.609;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1382,99,0 2 79312414 rs3739144 G A 1859.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.21;SB=-7.610e+02;SOR=1.528;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1888,147,0 2 79313815 rs2073445 G T 2634.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.28;SB=-1.372e+03;SOR=1.230;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2663,193,0 2 79314094 rs6723688 G T 929.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-2.720e+02;SOR=2.303;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:72:958,72,0 2 79314876 rs2073444 C A 1162.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.81;SB=-5.870e+02;SOR=1.236;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:87:1191,87,0 2 79348129 rs11339710 GA G 961.75 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.455;DB;DP=72;ExcessHet=3.0103;FS=3.514;MLEAC=1;MLEAF=0.500;MQ=60.52;MQ0=0;MQRankSum=1.831;POSITIVE_TRAIN_SITE;QD=16.03;RPA=15,14;RU=A;ReadPosRankSum=0.766;SB=-2.920e+02;SOR=1.550;STR;VQSLOD=0.416;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,51:72:24:999,0,24 2 79348196 rs2070707 G T 395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.252;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.80;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-1.749;SB=-7.100e+01;SOR=0.368;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:13,14:27:99:424,0,411 2 79350186 rs3739142 G A 2527.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.577;DB;DP=190;Dels=0.00;ExcessHet=3.0103;FS=2.514;HaplotypeScore=9.0079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=0.472;SB=-1.321e+03;SOR=0.913;VQSLOD=7.33;culprit=DP GT:AD:DP:GQ:PL 0/1:93,97:190:99:2556,0,2296 2 79350347 rs12228 A G 2288.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-1.194e+03;SOR=1.117;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2317,166,0 2 79350505 rs12072 C T 158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.730;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.82;ReadPosRankSum=1.631;SB=-3.500e+01;SOR=0.340;VQSLOD=9.69;culprit=QD GT:AD:DP:GQ:PL 0/1:11,7:18:99:187,0,398 2 79422965 rs1434199 C G 547.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQ0=0;MQRankSum=1.104;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=-0.862;SB=-3.070e+02;SOR=0.664;VQSLOD=3.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,23:49:99:576,0,629 2 79423062 rs149273901 TTTTG T 209.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;DB;DP=17;ExcessHet=3.0103;FS=4.150;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.10;RPA=3,2;RU=TTTG;ReadPosRankSum=1.604;SB=-5.976e+01;SOR=0.074;STR;VQSLOD=9.33;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,5:17:99:247,0,448 2 79750543 rs10205858 C T 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=-0.872;SB=0.00;SOR=1.609;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:95:241,0,95 2 79878922 rs78677982 T A 122.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=-0.705;SB=0.00;SOR=0.446;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:151,0,237 2 79914570 . C CT 690.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.71;RPA=12,13;RU=T;ReadPosRankSum=-0.505;SB=-1.238e+02;SOR=0.818;STR;VQSLOD=10.00;culprit=FS GT:AD:DP:GQ:PL 0/1:8,31:39:89:728,0,89 2 80097279 rs3755095 T C 140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.831;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=0.349;SB=-1.765e+00;SOR=1.609;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:169,0,198 2 80101321 rs61291641 T G 914.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=4.528;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=1.251;SB=-5.370e+02;SOR=0.634;VQSLOD=4.96;culprit=FS GT:AD:DP:GQ:PL 0/1:39,35:74:99:943,0,1023 2 80101515 rs56849709 CA C 273.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.82;RPA=12,11;RU=A;ReadPosRankSum=0.099;SB=-9.800e+01;SOR=0.495;STR;VQSLOD=8.20;culprit=QD GT:AD:DP:GQ:PL 0/1:19,16:36:99:311,0,444 2 80772972 rs2276659 G A 4352.77 PASS AC=2;AF=1.00;AN=2;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.48;SB=-2.242e+03;SOR=1.072;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,134:134:99:4381,322,0 2 80801524 rs2276661 T C 1004.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.706;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=2.365;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-1.042;SB=-2.800e+02;SOR=0.417;VQSLOD=9.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,41:89:99:1033,0,1503 2 80846147 . C CT 335.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;DP=35;ExcessHet=3.0103;FS=1.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.87;RPA=13,14;RU=T;ReadPosRankSum=1.172;SB=-9.400e+01;SOR=0.243;STR;VQSLOD=9.11;culprit=SOR GT:AD:DP:GQ:PL 0/1:17,17:35:99:373,0,264 2 80874623 rs77229391 A T 1467.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.798;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=10.428;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=1.549;SB=-4.930e+02;SOR=0.107;VQSLOD=5.17;culprit=FS GT:AD:DP:GQ:PL 0/1:31,53:84:99:1496,0,910 2 81423752 rs1962680 T C 642.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.22;SB=-4.040e+02;SOR=0.874;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:48:671,48,0 2 81424158 rs6547348 G T 567.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=-1.881e+02;SOR=1.493;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:596,45,0 2 81428075 rs6724708 C T 860.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.08;SB=-4.720e+02;SOR=1.352;VQSLOD=4.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:63:889,63,0 2 84650707 rs2832 A G 1131.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-3.920e+02;SOR=2.073;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:90:1160,90,0 2 84676163 rs10202632 C A 692.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.64;SB=-1.205e+02;SOR=3.056;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:721,54,0 2 84676886 . TAAAA T 1106.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;DP=47;ExcessHet=3.0103;FS=4.523;MLEAC=1;MLEAF=0.500;MQ=59.50;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.43;RPA=25,21;RU=A;ReadPosRankSum=1.635;SB=-4.140e+02;SOR=1.447;STR;VQSLOD=5.63;culprit=FS GT:AD:DP:GQ:PL 0/1:9,28:47:1:831,0,1 2 84755996 . A ATTT 1911.73 PASS AC=2;AF=1.00;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.59;RPA=11,14;RU=T;SB=-4.620e+02;SOR=2.409;STR;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:47:99:1949,132,0 2 84756049 rs4832089 G A 2354.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2277;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=-1.214e+03;SOR=1.292;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2383,178,0 2 84756341 rs4832090 T G 616.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=0.00;SOR=5.670;VQSLOD=8.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:645,48,0 2 84771480 rs1037863 G A 1813.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.79;SB=-1.094e+03;SOR=0.859;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1842,138,0 2 84771567 rs1542477 C T 1649.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.94;SB=-9.190e+02;SOR=1.140;VQSLOD=5.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1678,123,0 2 84774893 rs12474026 G A 562.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=0.00;SOR=5.549;VQSLOD=8.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:591,45,0 2 84800605 rs11891970 C A 1736.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-8.870e+02;SOR=1.159;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1765,129,0 2 84806553 rs6547569 G A 791.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.20;SB=0.00;SOR=6.273;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:820,66,0 2 84822715 rs6761632 C T 1402.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.21;SB=-2.321e+02;SOR=3.312;VQSLOD=5.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1431,105,0 2 84832476 rs5832617 CA C 92.80 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.70;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.73;RPA=18,17;RU=A;ReadPosRankSum=-0.645;SB=0.00;SOR=2.670;STR;VQSLOD=5.32;culprit=QD GT:AD:DP:GQ:PL 0/1:2,10:13:18:130,0,18 2 84834063 rs4276039 T C 2835.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-1.245e+03;SOR=1.445;VQSLOD=6.81;culprit=DP GT:AD:DP:GQ:PL 1/1:0,96:96:99:2864,214,0 2 84834237 rs4441485 T C 1964.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.89;SB=-7.300e+02;SOR=2.105;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:1993,153,0 2 84897517 rs1881095 A G 858.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-4.940e+02;SOR=0.836;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:63:887,63,0 2 84899360 rs4832106 G A 1976.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.786;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=6.232;HaplotypeScore=1.8273;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.38;ReadPosRankSum=0.028;SB=-4.721e+02;SOR=2.391;VQSLOD=4.88;culprit=FS GT:AD:DP:GQ:PL 1/1:1,62:63:99:2005,126,0 2 85361101 rs116356120 T G 2207.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.058;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=1.253;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.063;SB=-1.296e+03;SOR=0.563;VQSLOD=7.32;culprit=DP GT:AD:DP:GQ:PL 0/1:74,89:163:99:2236,0,1797 2 85489280 rs1991738 A G 616.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.82;SB=-3.660e+02;SOR=1.179;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:45:645,45,0 2 85489297 rs11686410 T A 773.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.68;SB=-5.260e+02;SOR=0.906;VQSLOD=5.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:57:802,57,0 2 85489391 rs139107233 C CT 1371.73 PASS AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.19;SB=-5.160e+02;SOR=1.382;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:84:1409,84,0 2 85510425 rs7601117 G A 362.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=63.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=0.00;SOR=5.136;VQSLOD=8.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:391,33,0 2 85510777 rs7574856 A G 2594.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.854;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.89;ReadPosRankSum=-1.176;SB=-1.208e+03;SOR=0.916;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:1,83:84:99:2623,193,0 2 85510965 rs7574999 A G 541.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SB=-1.115e+02;SOR=2.712;VQSLOD=7.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:570,42,0 2 85532205 rs6741339 C G 445.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.83;ReadPosRankSum=-0.481;SB=-2.180e+02;SOR=0.591;VQSLOD=10.26;culprit=FS GT:AD:DP:GQ:PL 0/1:9,16:25:99:474,0,200 2 85542686 rs7608881 G C 845.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=1.162;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=0.894;SB=-4.090e+02;SOR=0.616;VQSLOD=3.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,29:52:99:874,0,677 2 85543160 rs67071051 T TTCTA 285.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.06;MQ0=0;MQRankSum=-1.876;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=-0.175;SB=-1.764e+00;SOR=1.609;VQSLOD=3.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,5:11:99:323,0,394 2 85549868 rs4240199 A G 501.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.103;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.12;ReadPosRankSum=-0.834;SB=-2.980e+02;SOR=0.809;VQSLOD=8.90;culprit=FS GT:AD:DP:GQ:PL 0/1:33,22:55:99:530,0,904 2 85549874 rs3637 A G 519.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.740;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.00;ReadPosRankSum=-0.179;SB=-3.080e+02;SOR=0.760;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 0/1:32,20:53:99:548,0,822 2 85552186 rs7572750 C A 980.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.935;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=1.352;SB=-4.660e+02;SOR=0.808;VQSLOD=9.05;culprit=FS GT:AD:DP:GQ:PL 0/1:36,36:72:99:1009,0,1007 2 85553784 rs1044973 C T 2408.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.371;DB;DP=185;Dels=0.00;ExcessHet=3.0103;FS=8.780;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-0.977;SB=-1.520e+03;SOR=0.297;VQSLOD=4.80;culprit=DP GT:AD:DP:GQ:PL 0/1:89,96:185:99:2437,0,2472 2 85554080 rs4247303 G A 2138.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.555;DB;DP=200;Dels=0.00;ExcessHet=3.0103;FS=3.238;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=-0.755;SB=-1.313e+03;SOR=0.482;VQSLOD=5.90;culprit=DP GT:AD:DP:GQ:PL 0/1:113,87:200:99:2167,0,3023 2 85555262 rs10460585 T G 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=0.138;SB=0.00;SOR=0.569;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:163,0,232 2 85570152 . A G 65.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.63;MQ0=0;MQRankSum=-2.638;QD=6.58;ReadPosRankSum=-1.440;SB=0.00;SOR=0.223;VQSLOD=1.57;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:94:94,0,243 2 85570157 rs78997630 C T 53.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.63;MQ0=0;MQRankSum=-2.638;POSITIVE_TRAIN_SITE;QD=5.38;ReadPosRankSum=-1.440;SB=0.00;SOR=0.223;VQSLOD=2.97;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:82:82,0,257 2 85570159 . T G 48.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.716;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.22;MQ0=0;MQRankSum=-3.474;QD=3.48;ReadPosRankSum=0.000;SB=0.00;SOR=0.105;VQSLOD=0.979;culprit=QD GT:AD:DP:GQ:PL 0/1:11,3:14:77:77,0,347 2 85570186 . G A 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.237;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.50;MQ0=0;MQRankSum=-2.815;QD=6.56;ReadPosRankSum=-0.234;SB=0.00;SOR=0.175;VQSLOD=1.77;culprit=QD GT:AD:DP:GQ:PL 0/1:15,6:21:99:166,0,556 2 85570731 rs140433565 A G 776.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.964;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.050;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.23;MQ0=0;MQRankSum=1.329;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.633;SB=-3.720e+02;SOR=1.002;VQSLOD=0.019;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,31:57:99:805,0,662 2 85570942 rs9309620 G C 529.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.97;SB=-7.797e+01;SOR=3.126;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:558,42,0 2 85571458 rs140300131 C T 523.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.127;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.433;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.07;ReadPosRankSum=-1.585;SB=-3.000e+02;SOR=0.412;VQSLOD=8.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,23:52:99:552,0,778 2 85571710 rs4832171 A G 845.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-8.297e+01;SOR=4.255;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:27:72:874,72,0 2 85573033 rs908302 G A 5536.77 PASS AC=2;AF=1.00;AN=2;DB;DP=184;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-2.989e+03;SOR=1.130;VQSLOD=6.27;culprit=DP GT:AD:DP:GQ:PL 1/1:0,184:184:99:5565,418,0 2 85573049 rs908304 G A 2837.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;DB;DP=184;Dels=0.00;ExcessHet=3.0103;FS=1.846;HaplotypeScore=2.6653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=-1.191;SB=-1.454e+03;SOR=0.864;VQSLOD=6.92;culprit=DP GT:AD:DP:GQ:PL 0/1:82,102:184:99:2866,0,2136 2 85573403 rs908306 C A 544.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-4.176e+01;SOR=4.294;VQSLOD=7.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:45:573,45,0 2 85576451 rs10590946 GTC G 915.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.150;DB;DP=35;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.16;RPA=2,1;RU=TC;ReadPosRankSum=1.801;SB=-1.764e+00;SOR=2.179;STR;VQSLOD=5.20;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:15,20:35:99:953,0,707 2 85595818 rs955592 C T 1445.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.381;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=2.530;HaplotypeScore=1.8316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=0.911;SB=-8.670e+02;SOR=0.817;VQSLOD=7.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,60:109:99:1474,0,1155 2 85616758 rs17026285 T C 745.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.165;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.413;SB=-2.790e+02;SOR=0.659;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:31,27:58:99:774,0,806 2 85616884 . T G 1333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.994;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.723;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.47;ReadPosRankSum=0.798;SB=-7.920e+02;SOR=0.818;VQSLOD=6.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,52:107:99:1362,0,1434 2 85622059 rs6886 T C 2292.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-1.207e+03;SOR=0.898;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2321,175,0 2 85625222 rs6885 T G 1879.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.922;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.687;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=-1.184;SB=-9.750e+02;SOR=0.614;VQSLOD=9.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,67:122:99:1908,0,1432 2 85626479 rs34063934 G C 1924.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.249;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=1.588;HaplotypeScore=4.4663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=0.479;SB=-6.520e+02;SOR=0.525;VQSLOD=8.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:65,71:136:99:1953,0,1939 2 85626524 rs35666320 C T 1145.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.308;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=-0.844;SB=-1.010e+02;SOR=0.485;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:38,41:79:99:1174,0,1220 2 85626581 rs35391999 A T 1009.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.49;SB=0.00;SOR=6.666;VQSLOD=8.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:81:1038,81,0 2 85628556 rs2002444 A G 648.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.105;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=-0.588;SB=-2.760e+02;SOR=0.950;VQSLOD=7.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,24:52:99:677,0,865 2 85628983 rs2229668 C T 2280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.955;DB;DP=180;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.0933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-0.743;SB=-9.120e+02;SOR=0.660;VQSLOD=7.60;culprit=DP GT:AD:DP:GQ:PL 0/1:91,89:180:99:2309,0,2461 2 85629330 rs75351468 C A 546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.990;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=4.288;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-0.331;SB=-2.190e+02;SOR=1.118;VQSLOD=6.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,21:46:99:575,0,705 2 85662650 rs6547618 A G 1339.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.474;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=6.326;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.768;SB=-2.600e+02;SOR=1.436;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 0/1:44,45:89:99:1368,0,1123 2 85769246 rs1078005 G A 3343.77 PASS AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.59;SB=-1.910e+03;SOR=0.903;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,113:113:99:3372,256,0 2 85769711 rs1078004 C G 598.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.677;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=-1.170;SB=-3.660e+02;SOR=0.756;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 0/1:35,25:60:99:627,0,935 2 85776949 . C CA 89.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.86;MQ0=0;MQRankSum=2.909;POSITIVE_TRAIN_SITE;QD=4.08;RPA=16,17;RU=A;ReadPosRankSum=-0.991;SB=-1.773e+00;SOR=0.976;STR;VQSLOD=2.67;culprit=QD GT:AD:DP:GQ:PL 0/1:14,8:23:99:127,0,248 2 85780107 rs10179904 G A 1856.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=6.669;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=-1.328;SB=-1.119e+03;SOR=0.602;VQSLOD=4.66;culprit=FS GT:AD:DP:GQ:PL 0/1:58,71:129:99:1885,0,1495 2 85780536 rs699664 C T 1040.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=1.910;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=0.066;SB=-4.340e+02;SOR=0.976;VQSLOD=8.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,39:77:99:1069,0,1095 2 85781318 rs1254896 T G 2247.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=-1.220e+03;SOR=1.103;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2276,166,0 2 85783341 rs76767923 G A 1495.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=1.421;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=-0.655;SB=-7.580e+02;SOR=0.878;VQSLOD=7.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:71,57:128:99:1524,0,1727 2 85788140 rs1254898 C T 1019.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=7.520;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=-0.799;SB=-2.430e+02;SOR=1.688;VQSLOD=5.71;culprit=FS GT:AD:DP:GQ:PL 0/1:26,36:62:99:1048,0,571 2 85788175 rs7568458 T A 498.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.399;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=4.746;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=0.519;SB=-2.380e+02;SOR=0.252;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:25,21:46:99:527,0,700 2 85788270 rs10172544 C A 120.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.263;SB=0.00;SOR=0.551;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:149,0,215 2 85804540 rs1254899 A G 1215.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-5.770e+02;SOR=1.501;VQSLOD=6.86;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,41:41:87:1244,87,0 2 85806068 rs3731827 T C 981.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.049;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=1.813;HaplotypeScore=2.9197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=-0.051;SB=-3.380e+02;SOR=0.941;VQSLOD=7.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,40:98:99:1010,0,1470 2 85807081 rs373965843 AT A 76.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.724;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQ0=0;MQRankSum=0.925;QD=3.49;RPA=16,15;RU=T;ReadPosRankSum=0.267;SB=-2.777e+01;SOR=0.352;STR;VQSLOD=1.77;culprit=QD GT:AD:DP:GQ:PL 0/1:9,13:30:99:114,0,126 2 85808737 rs1009 A G 436.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.492;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.052;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.80;ReadPosRankSum=-0.068;SB=-2.900e+02;SOR=0.892;VQSLOD=6.89;culprit=QD GT:AD:DP:GQ:PL 0/1:36,20:56:99:465,0,1016 2 85808871 rs1058588 C T 203.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.452;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.26;ReadPosRankSum=-0.234;SB=-6.600e+01;SOR=0.368;VQSLOD=10.16;culprit=FS GT:AD:DP:GQ:PL 0/1:13,9:22:99:232,0,439 2 85818797 rs2289976 G A 457.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.574;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=-0.268;SB=-3.100e+01;SOR=1.038;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:21,18:39:99:486,0,669 2 85818886 rs14976 C T 1643.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=0.052;SB=-8.290e+02;SOR=0.693;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:50,63:113:99:1672,0,1291 2 85824084 rs2232748 G C 1656.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.599;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=5.964;HaplotypeScore=2.7249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=1.757;SB=-1.112e+03;SOR=0.482;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 0/1:85,68:153:99:1685,0,2333 2 85826132 rs1044158 G A 141.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.276;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=-1.709;SB=-9.300e+01;SOR=0.223;VQSLOD=9.86;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,6:13:99:170,0,213 2 85826721 rs11891495 G A 1679.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.211;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-1.443;SB=-9.420e+02;SOR=0.713;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:65,68:133:99:1708,0,1685 2 85828014 rs6733550 T G 898.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.783;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.050;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=0.077;SB=-4.180e+02;SOR=1.100;VQSLOD=7.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,34:59:99:927,0,619 2 85848747 . CT C 219.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DP=53;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.11;RPA=15,14;RU=T;ReadPosRankSum=1.417;SB=-9.400e+01;SOR=0.307;STR;VQSLOD=7.88;culprit=QD GT:AD:DP:GQ:PL 0/1:24,19:53:99:257,0,397 2 85863116 rs374603240 GTTTA G 596.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.58;ReadPosRankSum=1.333;SB=-1.170e+02;SOR=0.368;VQSLOD=8.18;culprit=FS GT:AD:DP:GQ:PL 0/1:16,11:27:99:634,0,1171 2 85863121 . A C 276.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.658;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.54;ReadPosRankSum=1.417;SB=-6.400e+01;SOR=0.804;VQSLOD=8.00;culprit=FS GT:AD:DP:GQ:PL 0/1:18,11:29:99:305,0,535 2 85863122 . G A 289.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.663;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.66;ReadPosRankSum=0.847;SB=-6.100e+01;SOR=0.914;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 0/1:18,12:30:99:318,0,552 2 85864710 rs34623563 T C 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.396;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=0.862;SB=0.00;SOR=0.616;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:12,11:23:99:315,0,399 2 85874845 rs17508843 G A 283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.007;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.83;ReadPosRankSum=1.691;SB=0.00;SOR=1.609;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:4,9:13:99:312,0,107 2 85888784 rs3024832 G C 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=0.055;SB=-4.276e+01;SOR=0.180;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:246,0,282 2 85890758 rs2304566 T C 1189.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.503;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=7.315;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=1.463;SB=-3.080e+02;SOR=1.476;VQSLOD=5.18;culprit=FS GT:AD:DP:GQ:PL 0/1:54,38:92:99:1218,0,1476 2 85890771 rs893159 T G 3004.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.57;SB=-1.282e+03;SOR=1.179;VQSLOD=5.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:3033,232,0 2 85893616 . C CTG 181.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.09;RPA=14,15;RU=TG;ReadPosRankSum=0.476;SB=0.00;SOR=0.283;STR;VQSLOD=8.32;culprit=FS GT:AD:DP:GQ:PL 0/1:13,7:20:99:219,0,441 2 85893741 rs1130866 G A 3013.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7520;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.55;SB=-1.372e+03;SOR=1.329;VQSLOD=4.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:104:99:3042,226,0 2 85921734 . G GC 579.73 PASS AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.76;RPA=2,3;RU=C;SB=0.00;SOR=5.549;STR;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:617,45,0 2 85981761 rs17851881 T C 444.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.542;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.262;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-0.465;SB=-1.360e+02;SOR=0.910;VQSLOD=7.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,17:40:99:473,0,621 2 86259443 rs2276626 C T 680.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SB=-4.380e+02;SOR=0.859;VQSLOD=5.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:51:709,51,0 2 86265740 rs114068877 G A 524.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=0.00;SOR=5.549;VQSLOD=8.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:553,45,0 2 86266145 rs76964577 G C 451.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-4.276e+01;SOR=3.611;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:480,36,0 2 86269163 rs34892520 C T 1978.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=-7.090e+02;SOR=1.721;VQSLOD=4.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2007,150,0 2 86304932 . GCGCA G 719.73 PASS AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.56;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.19;SB=0.00;SOR=5.421;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:41:757,41,0 2 86385886 rs6739460 A G 3111.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5846;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-1.277e+03;SOR=1.774;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3140,229,0 2 86683539 . A AT 103.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.76;RPA=22,23;RU=T;ReadPosRankSum=0.712;SB=-5.504e+00;SOR=0.941;STR;VQSLOD=8.79;culprit=QD GT:AD:DP:GQ:PL 0/1:8,10:22:73:141,0,73 2 86683642 rs2030259 A G 1170.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7429;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-6.350e+02;SOR=0.743;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:41:87:1199,87,0 2 86691250 rs12714187 G A 2573.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.39;SB=-1.265e+03;SOR=1.220;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2602,190,0 2 86705565 rs2292887 T C 755.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.35;SB=-3.630e+02;SOR=1.085;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:57:784,57,0 2 86707504 rs4832290 T C 2701.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.14;SB=-1.282e+03;SOR=1.585;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:2730,208,0 2 86737649 rs966477 G A 1202.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-3.900e+02;SOR=2.247;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:93:1231,93,0 2 86756209 rs1036940 C G 3436.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.06;SB=-5.760e+02;SOR=3.352;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:3465,253,0 2 86756280 rs9284788 G A 5628.77 PASS AC=2;AF=1.00;AN=2;DB;DP=193;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6939;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.16;SB=-2.774e+03;SOR=1.239;VQSLOD=5.50;culprit=DP GT:AD:DP:GQ:PL 1/1:0,193:193:99:5657,415,0 2 86850022 rs396354 T C 1613.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-4.890e+02;SOR=2.110;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1642,117,0 2 86947783 rs76239019 C T 626.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.12;SB=-3.530e+02;SOR=1.270;VQSLOD=4.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:48:655,48,0 2 86979093 rs10186663 G A 2377.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=-1.329e+03;SOR=1.068;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2406,178,0 2 86992337 . T TAA 2319.73 PASS AC=2;AF=1.00;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;RPA=1,3;RU=A;SB=-7.090e+02;SOR=1.981;STR;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:2357,141,0 2 86998659 rs71377101 CT C 612.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;DB;DP=41;ExcessHet=3.0103;FS=2.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;RPA=16,15;RU=T;ReadPosRankSum=0.701;SB=-1.310e+02;SOR=1.629;STR;VQSLOD=5.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,33:41:49:650,0,49 2 87015633 rs10684959 T TGA 2581.73 PASS AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.64;RPA=1,2;RU=GA;SB=-1.025e+03;SOR=1.157;STR;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:2619,151,0 2 87017701 rs147048705 C A 1091.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.064;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.812;SB=-4.050e+02;SOR=0.579;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 0/1:47,43:90:99:1120,0,1173 2 87042825 rs35555413 T C 1327.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.549;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.420;SB=-6.890e+02;SOR=0.740;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:59,49:108:99:1356,0,1505 2 87048702 rs13001400 T G 1391.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.95;SB=-4.000e+02;SOR=2.247;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1420,105,0 2 87060318 . CT C 54.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;DP=19;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.04;RPA=17,16;RU=T;ReadPosRankSum=-0.843;SB=-5.150e-01;SOR=2.179;STR;VQSLOD=3.73;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:19:92:92,0,201 2 87060359 rs62146088 C A 103.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.651;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.10;ReadPosRankSum=-2.482;SB=0.00;SOR=0.193;VQSLOD=8.62;culprit=QD GT:AD:DP:GQ:PL 0/1:12,5:17:99:132,0,428 2 87073743 rs4971887 A G 512.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=-6.997e+01;SOR=3.126;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:541,39,0 2 87073921 rs115819014 G A 414.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.619;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.264;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=0.000;SB=-2.390e+02;SOR=0.458;VQSLOD=9.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,19:39:99:443,0,542 2 87929102 rs200788774 C T 210.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.097;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.50;MQ0=16;MQRankSum=-5.469;QD=3.76;ReadPosRankSum=0.462;SB=-1.709e+01;SOR=1.042;VQSLOD=0.280;culprit=QD GT:AD:DP:GQ:PL 0/1:27,29:56:99:239,0,844 2 88328208 rs12328217 G A 840.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.49;SB=-3.077e+01;SOR=4.977;VQSLOD=5.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:69:869,69,0 2 88384084 rs920578 C T 1054.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.319;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=1.050;SB=-3.310e+02;SOR=0.748;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 0/1:40,38:78:99:1083,0,1110 2 88387403 rs1542088 C A 981.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=9.195;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=0.628;SB=-3.310e+02;SOR=1.799;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 0/1:29,34:63:99:1010,0,741 2 88396348 rs62156964 G A 167.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=7.570;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=-1.252;SB=-7.597e+01;SOR=0.039;VQSLOD=8.01;culprit=FS GT:AD:DP:GQ:PL 0/1:9,7:16:99:196,0,313 2 88396358 rs62156965 C T 106.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.12;ReadPosRankSum=-1.217;SB=0.00;SOR=0.399;VQSLOD=9.31;culprit=QD GT:AD:DP:GQ:PL 0/1:9,6:15:99:135,0,327 2 88402748 rs748226 G A 475.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=30.6920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.33;ReadPosRankSum=0.421;SB=-2.800e+02;SOR=0.475;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:30,21:52:99:504,0,694 2 88406257 rs2970920 A G 139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.600;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=-0.138;SB=-3.501e+01;SOR=0.551;VQSLOD=10.17;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:168,0,191 2 88407959 . T C 911.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.691;DP=61;Dels=0.00;ExcessHet=3.0103;FS=3.655;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.95;ReadPosRankSum=-0.763;SB=-4.430e+02;SOR=1.262;VQSLOD=5.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,36:61:99:940,0,673 2 88408172 rs2919858 A G 575.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.17;SB=-3.290e+02;SOR=1.329;VQSLOD=5.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:42:604,42,0 2 88409719 rs375953631 A AGAGT,AGAGTGTGTGT 6272.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.848;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.25;MQ0=0;MQRankSum=0.303;POSITIVE_TRAIN_SITE;QD=32.39;ReadPosRankSum=1.832;SB=-9.570e+02;SOR=1.609;VQSLOD=2.39;culprit=MQRankSum GT:AD:DP:GQ:PL 1/2:4,55,24:94:99:6310,1527,1353,3079,0,3781 2 88410102 rs2289497 C G 1502.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.66;SB=-8.297e+01;SOR=5.186;VQSLOD=4.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1531,117,0 2 88411605 rs2919865 A T 850.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=2.216;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=1.135;SB=-3.650e+02;SOR=1.238;VQSLOD=7.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,36:65:99:879,0,727 2 88411793 rs2970888 C A 681.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.47;SB=-8.097e+01;SOR=3.816;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:57:710,57,0 2 88424066 rs2241883 T C 1002.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.091;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=4.427;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=-0.516;SB=-4.370e+02;SOR=1.297;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 0/1:42,37:79:99:1031,0,1149 2 88472791 rs4129190 G A 937.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-4.870e+02;SOR=1.071;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:966,72,0 2 88474370 rs2139100 A G 7950.77 PASS AC=2;AF=1.00;AN=2;DB;DP=248;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9919;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.06;SB=-3.356e+03;SOR=1.348;VQSLOD=5.02;culprit=DP GT:AD:DP:GQ:PL 1/1:0,248:248:99:7979,587,0 2 88484808 rs2292869 C A 1600.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.346;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-0.597;SB=-7.400e+02;SOR=0.725;VQSLOD=9.05;culprit=FS GT:AD:DP:GQ:PL 0/1:70,66:136:99:1629,0,1776 2 88485392 rs1878810 G C 390.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-2.461e+02;SOR=0.836;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:419,30,0 2 88748390 rs4972212 A T 2936.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=-1.248e+03;SOR=1.659;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:2965,226,0 2 88825315 . G GT 384.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.772;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.12;RPA=14,15;RU=T;ReadPosRankSum=-0.235;SB=-1.020e+02;SOR=0.616;STR;VQSLOD=8.21;culprit=FS GT:AD:DP:GQ:PL 0/1:15,23:48:99:422,0,216 2 88825334 rs35903656 CAAG C 763.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.46;RPA=4,3;RU=AAG;ReadPosRankSum=-0.521;SB=-2.050e+02;SOR=0.560;STR;VQSLOD=8.12;culprit=FS GT:AD:DP:GQ:PL 0/1:14,16:34:99:801,0,695 2 88826219 rs56783496 G A 95.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9570;MLEAC=1;MLEAF=0.500;MQ=60.90;MQ0=0;MQRankSum=-0.473;POSITIVE_TRAIN_SITE;QD=8.71;ReadPosRankSum=-0.357;SB=0.00;SOR=0.330;VQSLOD=3.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,4:12:99:124,0,249 2 88870632 rs4972221 A T 614.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.36;SB=-1.513e+02;SOR=2.419;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:48:643,48,0 2 88874891 rs1805165 C A 3488.77 PASS AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5771;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;SB=-1.814e+03;SOR=1.061;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,112:112:99:3517,256,0 2 88879131 rs1805164 T C 2570.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.286;DB;DP=171;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.737;SB=-9.460e+02;SOR=0.719;VQSLOD=7.57;culprit=DP GT:AD:DP:GQ:PL 0/1:78,93:171:99:2599,0,2060 2 88882942 rs6750998 T A 300.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.112;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.13;ReadPosRankSum=0.940;SB=-8.900e+01;SOR=0.641;VQSLOD=8.85;culprit=QD GT:AD:DP:GQ:PL 0/1:23,14:37:99:329,0,657 2 88895123 rs13045 T C 1994.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-1.164e+03;SOR=0.723;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2023,150,0 2 88895351 rs7571971 T C 1282.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.89;SB=-8.290e+02;SOR=0.780;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:96:1311,96,0 2 88997878 rs908277 C T 331.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.52;ReadPosRankSum=-0.085;SB=0.00;SOR=2.147;VQSLOD=8.65;culprit=FS GT:AD:DP:GQ:PL 0/1:3,10:13:71:360,0,71 2 88999476 rs1158603 G A 1312.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.793;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=2.586;HaplotypeScore=1.6120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=-0.221;SB=-6.250e+02;SOR=0.981;VQSLOD=8.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,49:102:99:1341,0,1315 2 89033872 rs2306676 C T 184.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.593;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=0.511;SB=0.00;SOR=1.085;VQSLOD=10.20;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:213,0,119 2 89082503 rs74599148 C T 256.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.8772;MLEAC=1;MLEAF=0.500;MQ=50.88;MQ0=1;MQRankSum=-6.257;QD=5.71;ReadPosRankSum=-1.099;SB=-1.760e+02;SOR=0.610;VQSLOD=0.080;culprit=QD GT:AD:DP:GQ:PL 0/1:26,19:45:99:285,0,676 2 89082520 rs72930612 G A 208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.97;MQ0=2;MQRankSum=-5.823;QD=5.22;ReadPosRankSum=-2.017;SB=-1.070e+02;SOR=0.498;VQSLOD=0.076;culprit=QD GT:AD:DP:GQ:PL 0/1:23,17:40:99:237,0,624 2 89082536 rs201698437 T G 101.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.628;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.51;MQ0=2;MQRankSum=-5.515;QD=2.91;ReadPosRankSum=-0.804;SB=-5.100e+01;SOR=0.483;VQSLOD=0.676;culprit=QD GT:AD:DP:GQ:PL 0/1:23,12:35:99:130,0,598 2 89100759 rs73956140 A C 387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1309;MLEAC=1;MLEAF=0.500;MQ=51.43;MQ0=0;MQRankSum=-4.061;QD=10.20;ReadPosRankSum=1.931;SB=-8.900e+01;SOR=0.818;VQSLOD=1.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,20:38:99:416,0,485 2 89100764 rs74666751 A G 425.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.271;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.1722;MLEAC=1;MLEAF=0.500;MQ=52.11;MQ0=0;MQRankSum=-4.054;QD=11.83;ReadPosRankSum=3.030;SB=-5.400e+01;SOR=1.270;VQSLOD=0.155;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:17,19:36:99:454,0,475 2 89100816 rs200993950 A G 227.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.291;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8721;MLEAC=1;MLEAF=0.500;MQ=47.95;MQ0=0;MQRankSum=-2.009;QD=14.24;ReadPosRankSum=-0.425;SB=-6.997e+01;SOR=0.430;VQSLOD=2.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,12:16:99:256,0,101 2 89102251 . C T 1911.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.903;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9125;MLEAC=1;MLEAF=0.500;MQ=54.14;MQ0=0;MQRankSum=-4.047;QD=20.78;ReadPosRankSum=0.598;SB=-7.350e+02;SOR=0.598;VQSLOD=0.615;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,73:92:99:1940,0,382 2 89102252 . A G 1970.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.141;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9127;MLEAC=1;MLEAF=0.500;MQ=54.14;MQ0=0;MQRankSum=-4.047;QD=21.42;ReadPosRankSum=0.618;SB=-7.560e+02;SOR=0.598;VQSLOD=0.596;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,73:92:99:1999,0,376 2 89102392 rs77689030 C A 1788.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.192;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=53.14;MQ0=0;MQRankSum=-4.489;QD=20.10;ReadPosRankSum=0.537;SB=-6.200e+02;SOR=0.828;VQSLOD=0.274;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,71:89:99:1817,0,400 2 89102416 rs200090944 A C 229.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.180;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.39;MQ0=0;MQRankSum=-1.692;QD=3.43;ReadPosRankSum=0.539;SB=-4.900e+01;SOR=0.563;VQSLOD=1.45;culprit=QD GT:AD:DP:GQ:PL 0/1:54,13:67:99:258,0,1505 2 89102429 . T C 239.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.570;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.8914;MLEAC=1;MLEAF=0.500;MQ=50.56;MQ0=0;MQRankSum=-1.294;QD=4.36;ReadPosRankSum=0.705;SB=-2.901e+01;SOR=0.242;VQSLOD=1.81;culprit=QD GT:AD:DP:GQ:PL 0/1:44,11:55:99:268,0,1364 2 89102464 rs113574892 A G 353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.391;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=50.89;MQ0=0;MQRankSum=-0.081;QD=9.56;ReadPosRankSum=-0.430;SB=0.00;SOR=0.273;VQSLOD=1.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,13:37:99:382,0,781 2 89105008 . T C 65.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.396;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.81;MQ0=0;MQRankSum=-4.124;QD=3.46;ReadPosRankSum=1.068;SB=-2.004e+01;SOR=0.829;VQSLOD=0.760;culprit=QD GT:AD:DP:GQ:PL 0/1:14,5:19:94:94,0,369 2 89105019 . A C 71.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.511;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.57;MQ0=0;MQRankSum=-3.723;QD=4.49;ReadPosRankSum=0.341;SB=-2.302e+01;SOR=0.804;VQSLOD=1.60;culprit=QD GT:AD:DP:GQ:PL 0/1:11,5:16:99:100,0,298 2 89185056 rs145064364 C G 1694.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=-2.562;SB=-9.400e+02;SOR=0.722;VQSLOD=8.06;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:58,66:124:99:1723,0,1571 2 89185654 rs111711225 A G 896.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.108;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=4.351;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=0.510;SB=-3.590e+02;SOR=1.267;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 0/1:51,35:86:99:925,0,1374 2 89196757 rs3843805 G A 615.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.943;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-1.694;SB=-3.270e+02;SOR=0.649;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 0/1:28,25:53:99:644,0,694 2 89196906 rs4588191 A C 892.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.931;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=0.000;SB=-4.020e+02;SOR=0.830;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:30,30:60:99:921,0,782 2 89197190 rs55661410 C T 1084.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.147;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=2.014;HaplotypeScore=1.8808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=-0.525;SB=-3.310e+02;SOR=0.963;VQSLOD=7.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,38:79:99:1113,0,1176 2 89231382 rs12614252 G A 348.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.687;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=5.391;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-1.107;SB=-1.800e+02;SOR=0.894;VQSLOD=5.22;culprit=FS GT:AD:DP:GQ:PL 0/1:16,15:31:99:377,0,458 2 89247224 . T A 515.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.824;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.359;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.33;ReadPosRankSum=0.398;SB=-2.700e+02;SOR=0.420;VQSLOD=8.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,20:36:99:544,0,410 2 89247310 rs112599788 G A 60.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.947;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.34;ReadPosRankSum=1.012;SB=-5.150e-01;SOR=1.426;VQSLOD=7.36;culprit=QD GT:AD:DP:GQ:PL 0/1:11,3:14:89:89,0,292 2 89278489 rs6712880 A C 574.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5105;MLEAC=1;MLEAF=0.500;MQ=55.44;MQ0=0;MQRankSum=-3.341;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=1.543;SB=-3.140e+02;SOR=0.648;VQSLOD=2.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,23:39:99:603,0,366 2 89291813 . T C 138.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.88;ReadPosRankSum=-1.221;SB=0.00;SOR=0.693;VQSLOD=8.53;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:167,0,152 2 89292182 rs59175543 A G 1917.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.991;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=5.771;HaplotypeScore=3.4618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=-0.601;SB=-1.069e+03;SOR=0.670;VQSLOD=4.44;culprit=FS GT:AD:DP:GQ:PL 0/1:55,66:121:99:1946,0,1270 2 89292401 rs143871003 T C 283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.953;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=-1.531;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=0.342;SB=-3.400e+01;SOR=0.512;VQSLOD=3.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,9:20:99:312,0,324 2 89309424 rs10205742 G A 450.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.475;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=-1.097;SB=-6.400e+01;SOR=0.990;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:11,14:25:99:479,0,272 2 89309735 rs80322626 A G 1292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.426;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5475;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=-2.132;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-0.021;SB=-7.860e+02;SOR=0.635;VQSLOD=1.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,52:110:99:1321,0,1493 2 89309762 rs77800356 T G 1215.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.907;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=3.793;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=-2.103;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-0.645;SB=-5.220e+02;SOR=1.106;VQSLOD=0.028;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,48:101:99:1244,0,1297 2 89416689 rs148838792 C T 60.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.90;MQ0=0;MQRankSum=-0.431;POSITIVE_TRAIN_SITE;QD=6.08;ReadPosRankSum=-0.105;SB=0.00;SOR=0.223;VQSLOD=3.29;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:89:89,0,236 2 89416764 rs142994313 A T 250.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.241;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.50;MQ0=0;MQRankSum=-1.948;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=-0.870;SB=-3.100e+01;SOR=1.329;VQSLOD=3.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,10:20:99:279,0,304 2 89417346 rs111610161 T C 245.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.177;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.25;MQ0=0;MQRankSum=-0.669;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=-0.151;SB=-7.897e+01;SOR=0.072;VQSLOD=0.101;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,10:20:99:274,0,341 2 89428423 rs28409615 A G 871.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.319;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQ0=0;MQRankSum=-2.458;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=1.839;SB=-4.310e+02;SOR=0.798;VQSLOD=2.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,32:62:99:900,0,748 2 89459173 rs7606884 C T 557.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.234;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-2.218;SB=-9.500e+01;SOR=0.495;VQSLOD=9.43;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:20,21:41:99:586,0,638 2 89472415 rs7426367 A G 478.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.673;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.13;MQ0=0;MQRankSum=1.406;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=0.000;SB=-3.030e+02;SOR=0.793;VQSLOD=3.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,19:37:99:507,0,392 2 89472419 rs7424726 T C 462.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.08;MQ0=0;MQRankSum=1.342;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=1.029;SB=-2.790e+02;SOR=0.693;VQSLOD=2.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,18:36:99:491,0,393 2 89512775 rs145409842 T G 438.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.482;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=53.38;MQ0=0;MQRankSum=-1.433;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=0.889;SB=-5.500e+01;SOR=0.446;VQSLOD=3.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,16:37:99:467,0,615 2 90007670 rs2847917 G A 1027.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-2.850e+02;SOR=2.448;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:78:1056,78,0 2 90008208 rs138920656 T G 2588.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-1.120e+03;SOR=1.501;VQSLOD=5.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2617,190,0 2 90008287 rs147071425 A C 620.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.101;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=52.89;MQ0=0;MQRankSum=-1.294;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=0.383;SB=0.00;SOR=1.022;VQSLOD=3.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,19:33:99:649,0,410 2 90108416 rs859744 G A 2424.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-1.205e+03;SOR=1.207;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2453,181,0 2 90108778 rs859745 G T 3942.77 PASS AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;SB=-1.506e+03;SOR=1.772;VQSLOD=5.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,136:136:99:3971,301,0 2 90414152 rs374207862 A G 377.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5310;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;QD=23.61;SB=-2.221e+02;SOR=0.941;VQSLOD=3.04;culprit=QD GT:AD:DP:GQ:PL 1/1:0,16:18:30:406,30,0 2 90414224 rs368215182 C G 68.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.327;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.8277;MLEAC=1;MLEAF=0.500;MQ=41.97;MQ0=0;MQRankSum=-3.277;QD=3.82;ReadPosRankSum=-0.757;SB=-5.900e+01;SOR=0.446;VQSLOD=1.80;culprit=QD GT:AD:DP:GQ:PL 0/1:10,8:20:97:97,0,304 2 90414282 . A C 32.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.593;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9980;MLEAC=1;MLEAF=0.500;MQ=40.55;MQ0=0;MQRankSum=-2.823;QD=3.28;ReadPosRankSum=1.255;SB=-3.101e+01;SOR=0.368;VQSLOD=1.17;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:61:61,0,179 2 91678879 rs75128484 T C 1140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.075;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.2800;MLEAC=1;MLEAF=0.500;MQ=40.23;MQ0=1;MQRankSum=1.611;QD=22.37;ReadPosRankSum=-1.165;SB=-2.001e+02;SOR=0.544;VQSLOD=2.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,41:51:86:1169,0,86 2 91766685 rs2258279 G T 253.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9432;MLEAC=1;MLEAF=0.500;MQ=45.47;MQ0=3;MQRankSum=-3.717;QD=12.08;ReadPosRankSum=0.134;SB=-2.004e+01;SOR=0.976;VQSLOD=1.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,13:21:99:282,0,193 2 91766686 . A G 260.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.047;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9432;MLEAC=1;MLEAF=0.500;MQ=45.47;MQ0=3;MQRankSum=-3.717;QD=12.42;ReadPosRankSum=0.044;SB=-2.005e+01;SOR=0.976;VQSLOD=1.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,13:21:99:289,0,198 2 91767507 rs2580541 T A 341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.852;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=4.416;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.56;ReadPosRankSum=0.951;SB=-4.600e+01;SOR=1.476;VQSLOD=3.05;culprit=QD GT:AD:DP:GQ:PL 0/1:59,16:75:99:370,0,1551 2 91777983 . T C 211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.395;DP=16;Dels=0.00;ExcessHet=3.0103;FS=9.249;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.24;ReadPosRankSum=-0.681;SB=-1.030e+02;SOR=1.653;VQSLOD=4.21;culprit=FS GT:AD:DP:GQ:PL 0/1:5,11:16:99:240,0,131 2 91777987 . T C 237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;DP=16;Dels=0.00;ExcessHet=3.0103;FS=9.756;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.86;ReadPosRankSum=-0.850;SB=-9.900e+01;SOR=1.653;VQSLOD=4.10;culprit=FS GT:AD:DP:GQ:PL 0/1:5,11:16:99:266,0,115 2 91790759 rs11335938 GA G 49.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;DB;DP=19;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.62;RPA=7,6;RU=A;ReadPosRankSum=-0.371;SB=-3.177e+01;SOR=0.027;STR;VQSLOD=6.18;culprit=QD GT:AD:DP:GQ:PL 0/1:14,5:19:87:87,0,370 2 91790793 rs2647780 C A 219.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.367;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.87;ReadPosRankSum=-0.482;SB=-2.501e+01;SOR=0.818;VQSLOD=7.61;culprit=QD GT:AD:DP:GQ:PL 0/1:23,9:32:99:248,0,745 2 91791058 rs2557974 G A 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.001;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.527;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.65;ReadPosRankSum=-0.400;SB=-7.000e+01;SOR=0.197;VQSLOD=8.21;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,8:18:99:202,0,320 2 91795325 rs1640026 A G 503.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.205;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.62;ReadPosRankSum=-0.184;SB=0.00;SOR=0.468;VQSLOD=8.72;culprit=FS GT:AD:DP:GQ:PL 0/1:21,16:37:99:532,0,651 2 91795381 rs4244683 A C 2900.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=2.439;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.17;ReadPosRankSum=-0.120;SB=-5.990e+02;SOR=1.212;VQSLOD=2.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,97:120:99:2929,0,414 2 91795675 rs4337515 A G 3228.29 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.494;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4972;MLEAC=1;MLEAF=0.500;MQ=60.16;MQ0=0;MQRankSum=0.717;QD=24.46;ReadPosRankSum=0.913;SB=-1.001e+03;SOR=0.783;VQSLOD=0.704;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,106:132:99:3256,0,495 2 91795739 rs4637168 T C 2416.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;QD=30.88;SB=-1.195e+02;SOR=5.421;VQSLOD=3.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2445,181,0 2 91799977 rs2531388 C G 208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-0.256;SB=-3.500e+01;SOR=0.693;VQSLOD=8.52;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:237,0,239 2 91800035 rs2537108 T C 463.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.706;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.31;ReadPosRankSum=0.552;SB=-9.500e+01;SOR=0.693;VQSLOD=8.37;culprit=FS GT:AD:DP:GQ:PL 0/1:23,18:41:99:492,0,678 2 91800106 . T C 981.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.354;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-1.096;SB=-5.120e+02;SOR=0.767;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 0/1:55,42:97:99:1010,0,1356 2 91800155 rs2537118 G A 1094.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.757;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=2.496;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.14;ReadPosRankSum=1.299;SB=-7.160e+02;SOR=0.488;VQSLOD=7.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,46:109:99:1123,0,1743 2 91800211 rs2531389 A T 1331.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.719;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-1.942;SB=-8.300e+02;SOR=0.593;VQSLOD=7.60;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:55,52:107:99:1360,0,1410 2 91800347 rs6708765 G A 1839.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.541;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=1.274;HaplotypeScore=2.8933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.15;ReadPosRankSum=-1.519;SB=-8.190e+02;SOR=0.826;VQSLOD=5.83;culprit=DP GT:AD:DP:GQ:PL 0/1:94,71:165:99:1868,0,2570 2 91800380 . T C 1858.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.684;DP=186;Dels=0.00;ExcessHet=3.0103;FS=0.555;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.99;ReadPosRankSum=0.024;SB=-9.960e+02;SOR=0.603;VQSLOD=5.49;culprit=DP GT:AD:DP:GQ:PL 0/1:109,77:186:99:1887,0,2865 2 91800409 rs2430013 T C 2075.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=12.508;DB;DP=203;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.23;ReadPosRankSum=-0.585;SB=-1.449e+03;SOR=0.632;VQSLOD=5.09;culprit=DP GT:AD:DP:GQ:PL 0/1:114,89:203:99:2104,0,2840 2 91800445 rs2430014 G A 1920.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.406;DB;DP=184;Dels=0.00;ExcessHet=3.0103;FS=1.861;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.44;ReadPosRankSum=0.360;SB=-1.082e+03;SOR=0.534;VQSLOD=5.24;culprit=DP GT:AD:DP:GQ:PL 0/1:106,78:184:99:1949,0,2791 2 91800491 rs2429350 T A 1762.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.085;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=4.276;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.77;ReadPosRankSum=-0.609;SB=-7.810e+02;SOR=0.422;VQSLOD=7.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:75,63:138:99:1791,0,2145 2 91800863 rs1640042 T G 1884.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.907;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=1.291;QD=18.48;ReadPosRankSum=0.520;SB=-4.270e+02;SOR=0.503;VQSLOD=1.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,63:102:99:1913,0,1077 2 91800890 rs9749947 G A 515.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.238;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=4.851;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.61;ReadPosRankSum=-1.172;SB=-4.000e+01;SOR=1.627;VQSLOD=3.34;culprit=QD GT:AD:DP:GQ:PL 0/1:56,22:78:99:544,0,1783 2 91800939 rs1640043 T C 877.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.101;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.51;ReadPosRankSum=1.910;SB=-2.230e+02;SOR=0.673;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 0/1:16,29:45:99:906,0,452 2 91800960 rs1640044 G C 595.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.343;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQ0=0;MQRankSum=-0.782;QD=15.28;ReadPosRankSum=1.800;SB=-2.140e+02;SOR=0.682;VQSLOD=1.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,23:39:99:624,0,524 2 91809472 . G GTGACTAACAA 726.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.51;MQ0=0;MQRankSum=-4.580;QD=9.48;ReadPosRankSum=2.381;SB=-2.590e+02;SOR=0.465;VQSLOD=0.599;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,6:23:99:764,0,2144 2 91924782 rs28380329 C A 123.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.380;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.48;MQ0=0;MQRankSum=-3.067;QD=11.25;ReadPosRankSum=-0.880;SB=-1.765e+00;SOR=1.609;VQSLOD=1.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,5:11:99:152,0,180 2 91924804 . T C 184.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.657;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=56.49;MQ0=0;MQRankSum=-2.610;QD=10.87;ReadPosRankSum=-0.375;SB=-5.600e+01;SOR=0.569;VQSLOD=2.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,8:17:99:213,0,246 2 91926883 . T G 95.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.58;ReadPosRankSum=-0.108;SB=0.00;SOR=0.412;VQSLOD=8.48;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:124,0,189 2 91926926 . C T 193.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.788;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.76;ReadPosRankSum=0.345;SB=-7.102e+01;SOR=0.301;VQSLOD=7.96;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:222,0,310 2 91927088 . G A 1109.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.625;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8133;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=-1.989;QD=9.57;ReadPosRankSum=0.211;SB=-4.380e+02;SOR=0.770;VQSLOD=0.432;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:72,44:116:99:1138,0,1988 2 91936365 rs62145882 A G 1195.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.035;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.48;MQ0=0;MQRankSum=-2.603;QD=16.61;ReadPosRankSum=1.896;SB=-1.130e+02;SOR=0.822;VQSLOD=1.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,38:72:99:1224,0,1053 2 91936455 rs75723463 T G 477.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.170;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=13.104;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.91;ReadPosRankSum=-1.525;SB=-1.220e+02;SOR=2.119;VQSLOD=3.64;culprit=FS GT:AD:DP:GQ:PL 0/1:20,17:37:99:506,0,564 2 91936481 rs112641629 TAA T 377.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;DB;DP=31;ExcessHet=3.0103;FS=6.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.59;ReadPosRankSum=-0.476;SB=-1.240e+02;SOR=1.246;VQSLOD=4.48;culprit=FS GT:AD:DP:GQ:PL 0/1:21,9:31:99:415,0,1137 2 91936489 rs79567124 T C 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.768;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.76;ReadPosRankSum=0.638;SB=-7.200e+01;SOR=0.697;VQSLOD=3.11;culprit=QD GT:AD:DP:GQ:PL 0/1:23,7:30:99:171,0,583 2 91936500 rs79050754 T C 94.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.020;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.51;ReadPosRankSum=1.344;SB=-3.700e+01;SOR=0.828;VQSLOD=2.82;culprit=QD GT:AD:DP:GQ:PL 0/1:22,5:27:99:123,0,558 2 91936529 rs79229309 C G 76.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.64;MQ0=0;MQRankSum=0.795;QD=2.74;ReadPosRankSum=-0.230;SB=-3.500e+01;SOR=0.551;VQSLOD=0.613;culprit=QD GT:AD:DP:GQ:PL 0/1:24,4:28:99:105,0,583 2 91936560 rs79835708 T C 92.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.43;MQ0=0;MQRankSum=-0.699;QD=2.73;ReadPosRankSum=-1.921;SB=-6.400e+01;SOR=0.569;VQSLOD=0.690;culprit=QD GT:AD:DP:GQ:PL 0/1:28,6:34:99:121,0,757 2 91936561 rs76581622 T G 92.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.35;MQ0=0;MQRankSum=-0.652;QD=2.81;ReadPosRankSum=-2.196;SB=-6.200e+01;SOR=0.627;VQSLOD=1.44;culprit=QD GT:AD:DP:GQ:PL 0/1:27,6:33:99:121,0,749 2 91936661 rs78274409 C G 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.199;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.78;MQ0=0;MQRankSum=-1.839;QD=6.63;ReadPosRankSum=-0.586;SB=-5.400e+01;SOR=1.096;VQSLOD=1.50;culprit=QD GT:AD:DP:GQ:PL 0/1:24,9:33:99:247,0,744 2 91936724 rs75252532 T C 378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.431;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6797;MLEAC=1;MLEAF=0.500;MQ=57.95;MQ0=0;MQRankSum=-3.535;QD=7.28;ReadPosRankSum=0.706;SB=-2.960e+02;SOR=0.760;VQSLOD=1.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,20:52:99:407,0,800 2 91936758 rs75195235 G A 143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.021;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.93;MQ0=0;MQRankSum=-1.764;POSITIVE_TRAIN_SITE;QD=2.48;ReadPosRankSum=1.390;SB=-1.150e+02;SOR=0.616;VQSLOD=2.49;culprit=QD GT:AD:DP:GQ:PL 0/1:48,10:58:99:172,0,1233 2 91936800 rs112029897 C T 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.056;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.58;MQ0=0;MQRankSum=-3.674;QD=5.51;ReadPosRankSum=-1.308;SB=-1.420e+02;SOR=0.861;VQSLOD=1.13;culprit=QD GT:AD:DP:GQ:PL 0/1:35,17:52:99:315,0,937 2 91936888 rs77258496 C T 48.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.972;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.97;MQ0=0;MQRankSum=-2.424;QD=3.05;ReadPosRankSum=-0.243;SB=0.00;SOR=0.138;VQSLOD=1.94;culprit=QD GT:AD:DP:GQ:PL 0/1:12,4:16:77:77,0,412 2 91936896 rs78258129 A G 43.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.97;MQ0=0;MQRankSum=-2.424;QD=2.74;ReadPosRankSum=-0.546;SB=0.00;SOR=0.138;VQSLOD=1.67;culprit=QD GT:AD:DP:GQ:PL 0/1:12,4:16:72:72,0,402 2 91937490 rs78736708 T C 283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.352;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.41;MQ0=0;MQRankSum=-4.039;QD=10.13;ReadPosRankSum=-0.534;SB=-3.300e+01;SOR=0.648;VQSLOD=1.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,16:28:99:312,0,337 2 91937699 rs2659394 C T 657.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.644;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.04;MQ0=0;MQRankSum=-3.628;QD=11.75;ReadPosRankSum=0.148;SB=-3.120e+02;SOR=0.693;VQSLOD=1.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,28:56:99:686,0,730 2 91937761 . C T 247.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.126;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=-2.481;QD=10.32;ReadPosRankSum=-1.201;SB=-2.901e+01;SOR=0.412;VQSLOD=1.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,10:24:99:276,0,457 2 91937775 . G A 149.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.426;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.30;MQ0=0;MQRankSum=-3.025;QD=8.32;ReadPosRankSum=-0.609;SB=0.00;SOR=0.255;VQSLOD=1.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,6:18:99:178,0,438 2 91940702 rs116820320 C T 503.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.895;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=59.98;MQ0=0;MQRankSum=-1.081;QD=12.29;ReadPosRankSum=0.696;SB=-3.300e+01;SOR=0.478;VQSLOD=2.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,18:41:99:532,0,740 2 91944312 rs115171467 T C 771.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.026;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.74;MQ0=0;MQRankSum=-2.635;QD=22.70;ReadPosRankSum=-1.816;SB=-7.897e+01;SOR=0.396;VQSLOD=0.668;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,24:34:99:800,0,281 2 91954857 rs2659347 T C 83.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.06;MQ0=0;MQRankSum=-3.481;QD=5.98;ReadPosRankSum=0.908;SB=0.00;SOR=0.307;VQSLOD=1.52;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:14:99:112,0,319 2 91954862 rs71422500 G A 118.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.73;MQ0=0;MQRankSum=-3.719;QD=7.92;ReadPosRankSum=0.056;SB=0.00;SOR=0.399;VQSLOD=1.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,6:15:99:147,0,287 2 91954890 . A G 334.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.689;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8914;MLEAC=1;MLEAF=0.500;MQ=52.98;MQ0=0;MQRankSum=-4.965;QD=11.96;ReadPosRankSum=-0.488;SB=0.00;SOR=0.460;VQSLOD=0.989;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,12:28:99:363,0,478 2 91955582 rs145692591 G T 56.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=0.385;QD=5.68;ReadPosRankSum=-0.105;SB=-1.765e+00;SOR=0.836;VQSLOD=1.92;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:85:85,0,220 2 91955583 rs140736875 T A 65.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.893;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=0.385;QD=6.58;ReadPosRankSum=0.000;SB=-1.765e+00;SOR=0.836;VQSLOD=1.99;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:94:94,0,218 2 91962942 rs62144313 G A 179.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.39;MQ0=0;MQRankSum=-1.546;QD=9.99;ReadPosRankSum=-0.301;SB=-6.400e+01;SOR=1.201;VQSLOD=2.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,9:18:99:208,0,245 2 91962954 rs74613653 C A 184.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.187;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.74;MQ0=0;MQRankSum=-2.327;QD=10.87;ReadPosRankSum=-0.094;SB=-6.400e+01;SOR=1.426;VQSLOD=1.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,9:17:99:213,0,218 2 91964044 rs4496366 A G 627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.926;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.50;MQ0=0;MQRankSum=-4.877;QD=12.56;ReadPosRankSum=-0.223;SB=-1.250e+02;SOR=0.948;VQSLOD=0.999;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,25:50:99:656,0,777 2 92030234 rs73955720 T C 257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.181;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.09;MQ0=0;MQRankSum=-3.753;QD=13.57;ReadPosRankSum=-0.869;SB=-3.200e+01;SOR=0.527;VQSLOD=1.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,11:19:99:286,0,233 2 92030374 rs74944794 G A 621.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9328;MLEAC=1;MLEAF=0.500;MQ=57.65;MQ0=0;MQRankSum=-2.566;QD=14.46;ReadPosRankSum=-0.076;SB=-4.120e+02;SOR=0.855;VQSLOD=2.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,28:43:99:650,0,397 2 92030378 rs76780773 T G 522.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.140;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9328;MLEAC=1;MLEAF=0.500;MQ=58.42;MQ0=0;MQRankSum=-2.402;QD=12.45;ReadPosRankSum=0.479;SB=-3.510e+02;SOR=0.677;VQSLOD=0.660;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,26:42:99:551,0,412 2 92030400 rs66674010 C G 593.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.454;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=-1.841;QD=15.22;ReadPosRankSum=1.660;SB=-2.200e+02;SOR=0.919;VQSLOD=0.193;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,24:39:99:622,0,327 2 92031253 rs72936134 G T 291.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.377;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.33;MQ0=0;MQRankSum=-4.192;QD=11.22;ReadPosRankSum=-0.493;SB=-2.060e+02;SOR=0.916;VQSLOD=1.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,15:26:99:320,0,287 2 92031352 . C T 170.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.845;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.50;MQ0=0;MQRankSum=-4.286;QD=8.13;ReadPosRankSum=-0.544;SB=-6.100e+01;SOR=0.542;VQSLOD=1.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,8:21:99:199,0,375 2 92031353 . T C 176.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.834;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.50;MQ0=0;MQRankSum=-4.286;QD=8.42;ReadPosRankSum=-0.580;SB=-6.700e+01;SOR=0.542;VQSLOD=1.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,8:21:99:205,0,363 2 92031354 . G A 170.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.700;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.50;MQ0=0;MQRankSum=-4.286;QD=8.13;ReadPosRankSum=-0.616;SB=-6.400e+01;SOR=0.542;VQSLOD=1.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,8:21:99:199,0,368 2 92031365 rs78311618 C T 157.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.50;MQ0=0;MQRankSum=-4.286;QD=7.51;ReadPosRankSum=-1.776;SB=-6.400e+01;SOR=0.542;VQSLOD=0.864;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,8:21:99:186,0,342 2 92031373 rs74775836 G T 127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.130;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.77;MQ0=0;MQRankSum=-4.206;QD=6.39;ReadPosRankSum=-1.667;SB=-5.500e+01;SOR=0.425;VQSLOD=0.411;culprit=QD GT:AD:DP:GQ:PL 0/1:13,7:20:99:156,0,369 2 92047432 rs199967157 G C 216.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.465;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.85;MQ0=0;MQRankSum=-3.138;QD=13.55;ReadPosRankSum=2.322;SB=-7.900e+01;SOR=0.892;VQSLOD=1.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,11:16:99:245,0,99 2 92047438 rs77712042 T C 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.105;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.85;MQ0=0;MQRankSum=-3.138;QD=10.92;ReadPosRankSum=2.154;SB=-5.800e+01;SOR=0.892;VQSLOD=1.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,11:16:99:203,0,99 2 92047442 rs2873765 C T 233.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.235;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.34;MQ0=0;MQRankSum=-3.223;QD=12.99;ReadPosRankSum=1.331;SB=-1.390e+02;SOR=0.551;VQSLOD=1.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,13:18:99:262,0,99 2 92102168 rs4927413 C T 619.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.525;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=42.25;MQ0=8;MQRankSum=-4.353;QD=9.84;ReadPosRankSum=-0.372;SB=-2.030e+02;SOR=0.252;VQSLOD=0.691;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,36:63:99:648,0,475 2 92102211 . A G 345.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.966;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7323;MLEAC=1;MLEAF=0.500;MQ=40.60;MQ0=0;MQRankSum=-4.220;QD=11.15;ReadPosRankSum=-0.407;SB=-1.765e+00;SOR=0.693;VQSLOD=1.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,23:31:99:374,0,261 2 92129006 rs28415795 T C 115.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.382;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.89;MQ0=0;MQRankSum=-1.778;QD=8.91;ReadPosRankSum=0.423;SB=-9.900e+01;SOR=0.627;VQSLOD=2.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,10:13:62:144,0,62 2 95513820 rs376155492 C T 99.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=26.5592;MLEAC=1;MLEAF=0.500;MQ=45.86;MQ0=5;MQRankSum=-4.329;QD=2.04;ReadPosRankSum=-0.231;SB=-8.100e+01;SOR=0.473;VQSLOD=0.999;culprit=QD GT:AD:DP:GQ:PL 0/1:33,16:49:99:128,0,806 2 95513877 rs75617483 A G 251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.252;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.3483;MLEAC=1;MLEAF=0.500;MQ=47.13;MQ0=5;MQRankSum=-5.187;QD=5.86;ReadPosRankSum=-0.314;SB=-1.610e+02;SOR=0.815;VQSLOD=0.716;culprit=QD GT:AD:DP:GQ:PL 0/1:23,20:43:99:280,0,539 2 95513880 rs113232879 C T 245.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.784;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.8913;MLEAC=1;MLEAF=0.500;MQ=46.78;MQ0=5;MQRankSum=-5.086;QD=5.85;ReadPosRankSum=-0.619;SB=-1.550e+02;SOR=0.714;VQSLOD=0.652;culprit=QD GT:AD:DP:GQ:PL 0/1:22,20:42:99:274,0,600 2 95513893 rs80295192 A G 251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=14.0658;MLEAC=1;MLEAF=0.500;MQ=45.34;MQ0=5;MQRankSum=-4.819;QD=5.99;ReadPosRankSum=-1.089;SB=-1.360e+02;SOR=0.976;VQSLOD=0.852;culprit=QD GT:AD:DP:GQ:PL 0/1:21,21:42:99:280,0,553 2 95513964 rs112377302 T C 49.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.131;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=41.87;MQ0=3;MQRankSum=-0.599;QD=3.11;ReadPosRankSum=-0.849;SB=-1.765e+00;SOR=0.495;VQSLOD=1.03;culprit=QD GT:AD:DP:GQ:PL 0/1:13,3:16:78:78,0,270 2 95527944 rs13384683 A G 135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.06;MQ0=0;MQRankSum=-1.876;QD=12.34;ReadPosRankSum=-1.501;SB=-7.200e+01;SOR=0.693;VQSLOD=1.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,8:11:64:164,0,64 2 95528005 . G T 78.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8726;MLEAC=1;MLEAF=0.500;MQ=50.07;MQ0=0;MQRankSum=-1.242;QD=9.85;ReadPosRankSum=1.415;SB=-6.300e+01;SOR=0.693;VQSLOD=1.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,4:12:74:107,0,74 2 95528009 . G A 139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8726;MLEAC=1;MLEAF=0.500;MQ=50.07;MQ0=0;MQRankSum=-2.166;QD=11.65;ReadPosRankSum=1.074;SB=-1.030e+02;SOR=0.693;VQSLOD=1.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,8:12:68:168,0,68 2 95537179 rs33986535 TAC T 231.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.83;RPA=2,1;RU=AC;ReadPosRankSum=0.622;SB=0.00;SOR=0.836;STR;VQSLOD=10.04;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:269,0,266 2 95537245 rs4854234 C G 703.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.277;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=4.082;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=-0.446;SB=-2.071e+02;SOR=0.176;VQSLOD=9.65;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,28:43:99:732,0,443 2 95537572 rs4854235 C T 908.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-0.635;SB=-4.880e+02;SOR=0.693;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 0/1:33,33:66:99:937,0,962 2 95537622 rs11164112 A G 849.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.885;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.038;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=0.198;SB=-4.320e+02;SOR=0.436;VQSLOD=9.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,30:68:99:878,0,1024 2 95542112 rs10191464 C T 278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.609;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.44;ReadPosRankSum=2.284;SB=0.00;SOR=1.609;VQSLOD=8.60;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,9:13:99:307,0,118 2 95715367 . C T 1064.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.086;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.75;ReadPosRankSum=1.299;SB=-7.000e+02;SOR=0.625;VQSLOD=6.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,42:60:99:1093,0,400 2 95719170 rs139621459 G A 661.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.595;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.856;HaplotypeScore=3.5347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.07;ReadPosRankSum=0.290;SB=-3.840e+02;SOR=0.753;VQSLOD=5.17;culprit=QD GT:AD:DP:GQ:PL 0/1:50,32:82:99:690,0,1271 2 95775761 rs113259652 G A 614.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.070;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=10.418;HaplotypeScore=2.5584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-0.330;SB=-3.520e+02;SOR=0.431;VQSLOD=5.49;culprit=FS GT:AD:DP:GQ:PL 0/1:25,24:49:99:643,0,652 2 95787605 . C T 400.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.713;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.45;ReadPosRankSum=0.215;SB=-2.660e+02;SOR=0.804;VQSLOD=8.46;culprit=FS GT:AD:DP:GQ:PL 0/1:18,17:35:99:429,0,475 2 95816017 rs55921067 T TA 291.74 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.16;RPA=19,20;RU=A;ReadPosRankSum=-0.511;SB=0.00;SOR=4.294;STR;VQSLOD=4.48;culprit=FS GT:AD:DP:GQ:PL 1/1:1,16:26:25:329,25,0 2 95830737 . C CA 1444.73 PASS AC=2;AF=1.00;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;RPA=5,6;RU=A;SB=-5.990e+02;SOR=1.203;STR;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1482,138,0 2 95843080 rs35376938 TC T 102.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.56;RPA=3,2;RU=C;ReadPosRankSum=0.233;SB=0.00;SOR=0.446;STR;VQSLOD=9.71;culprit=QD GT:AD:DP:GQ:PL 0/1:7,5:12:99:140,0,247 2 95847040 rs10578519 TGCG T 3903.73 PASS AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.30;RPA=3,2;RU=GCG;SB=-1.563e+03;SOR=1.179;STR;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:77:99:3941,205,0 2 95941792 . G A 775.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.702;DP=66;Dels=0.00;ExcessHet=3.0103;FS=6.540;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.75;ReadPosRankSum=0.741;SB=-3.140e+02;SOR=1.278;VQSLOD=4.46;culprit=FS GT:AD:DP:GQ:PL 0/1:36,30:66:99:804,0,890 2 95944902 . A AC 356.74 PASS AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.13;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.49;RPA=2,3;RU=C;SB=-7.797e+01;SOR=2.303;STR;VQSLOD=5.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:394,30,0 2 95945568 rs7585914 G A 799.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-3.070e+02;SOR=1.697;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:63:828,63,0 2 95945830 rs7586229 G T 1283.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;SB=-5.950e+02;SOR=1.414;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:96:1312,96,0 2 95947085 . A G 1257.77 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.44;SB=-5.170e+02;SOR=1.445;VQSLOD=5.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:96:1286,96,0 2 95952177 rs7602232 C G 2994.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-1.816e+03;SOR=0.778;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:3023,217,0 2 96012907 rs7602807 C G 2341.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8937;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-1.349e+03;SOR=0.850;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2370,175,0 2 96048862 rs58372613 C T 185.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.233;HaplotypeScore=1.8939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=-0.431;SB=-1.075e+02;SOR=0.093;VQSLOD=8.86;culprit=SOR GT:AD:DP:GQ:PL 0/1:3,7:10:92:214,0,92 2 96049917 . TAC T 133.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;RPA=18,17;RU=AC;ReadPosRankSum=-1.754;SB=0.00;SOR=0.892;STR;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:4,5:12:63:171,0,63 2 96076409 rs6577014 C T 1032.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.35;SB=-2.431e+02;SOR=2.468;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:81:1061,81,0 2 96185714 rs35256168 C T 328.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.462;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=-0.628;SB=-1.230e+02;SOR=0.616;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:17,13:30:99:357,0,500 2 96517783 rs113889919 CTAA C 341.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.55;MQ0=0;MQRankSum=-0.759;POSITIVE_TRAIN_SITE;QD=24.41;ReadPosRankSum=0.812;SB=-5.800e+01;SOR=0.693;VQSLOD=3.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,7:14:99:379,0,260 2 96517882 rs62156871 G A 337.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=21.2247;MLEAC=1;MLEAF=0.500;MQ=47.00;MQ0=3;MQRankSum=-2.656;QD=7.51;ReadPosRankSum=-0.392;SB=-2.510e+02;SOR=0.741;VQSLOD=1.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,19:46:99:366,0,520 2 96517885 . G A 399.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=22.7125;MLEAC=1;MLEAF=0.500;MQ=46.64;MQ0=3;MQRankSum=-4.271;QD=8.69;ReadPosRankSum=1.701;SB=-2.490e+02;SOR=0.990;VQSLOD=0.922;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,24:46:99:428,0,456 2 96517960 rs76809881 T A 366.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9894;MLEAC=1;MLEAF=0.500;MQ=47.97;MQ0=2;MQRankSum=-3.977;QD=13.10;ReadPosRankSum=-0.108;SB=-1.320e+02;SOR=0.673;VQSLOD=1.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,19:28:99:395,0,264 2 96517961 rs77337934 T A 344.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.415;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9707;MLEAC=1;MLEAF=0.500;MQ=48.12;MQ0=2;MQRankSum=-3.754;QD=13.26;ReadPosRankSum=-0.153;SB=-1.510e+02;SOR=0.374;VQSLOD=1.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,18:26:99:373,0,249 2 96518022 rs4907282 G A 152.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=40.17;MQ0=3;MQRankSum=-2.515;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.241;SB=0.00;SOR=1.402;VQSLOD=3.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,9:12:85:181,0,85 2 96521044 . G A 41.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.155;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4595;MLEAC=1;MLEAF=0.500;MQ=41.56;MQ0=2;MQRankSum=-2.733;QD=2.20;ReadPosRankSum=0.453;SB=0.00;SOR=0.293;VQSLOD=1.90;culprit=QD GT:AD:DP:GQ:PL 0/1:12,7:19:70:70,0,333 2 96521046 rs138370118 A G 69.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.032;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4595;MLEAC=1;MLEAF=0.500;MQ=41.56;MQ0=2;MQRankSum=-4.101;QD=3.67;ReadPosRankSum=-0.659;SB=0.00;SOR=0.593;VQSLOD=1.51;culprit=QD GT:AD:DP:GQ:PL 0/1:9,10:19:98:98,0,312 2 96521049 rs2950724 T C 44.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.883;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4595;MLEAC=1;MLEAF=0.500;MQ=41.56;MQ0=2;MQRankSum=-4.101;QD=2.36;ReadPosRankSum=-0.517;SB=0.00;SOR=0.593;VQSLOD=1.27;culprit=QD GT:AD:DP:GQ:PL 0/1:9,10:19:73:73,0,313 2 96523006 rs12717776 A C 321.78 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.99;MQ0=0;MQRankSum=2.490;POSITIVE_TRAIN_SITE;QD=21.45;ReadPosRankSum=2.125;SB=-1.393e+02;SOR=0.368;VQSLOD=2.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,13:15:0:347,0,0 2 96523009 rs12717777 A C 355.53 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;MQRankSum=2.366;POSITIVE_TRAIN_SITE;QD=20.91;ReadPosRankSum=1.566;SB=-2.011e+02;SOR=0.317;VQSLOD=3.07;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,15:17:3:382,3,0 2 96523047 rs12717778 A G 462.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.050;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.94;MQ0=0;MQRankSum=0.770;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=1.593;SB=-2.601e+02;SOR=0.257;VQSLOD=0.096;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,19:25:99:491,0,100 2 96523096 rs10211258 T C 513.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.819;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.696;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.36;MQ0=0;MQRankSum=0.375;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=0.235;SB=-2.990e+02;SOR=0.626;VQSLOD=0.163;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,23:33:99:542,0,192 2 96604420 rs74931694 A T 520.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.919;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.70;MQ0=0;MQRankSum=-3.322;QD=23.67;ReadPosRankSum=-0.903;SB=0.00;SOR=2.303;VQSLOD=0.124;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,17:22:99:549,0,132 2 96604446 . C T 124.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9033;MLEAC=1;MLEAF=0.500;MQ=52.50;MQ0=0;MQRankSum=1.197;QD=3.20;ReadPosRankSum=-0.440;SB=0.00;SOR=0.057;VQSLOD=0.873;culprit=QD GT:AD:DP:GQ:PL 0/1:32,7:39:99:153,0,1128 2 96604452 rs371118313 C A 308.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.344;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9033;MLEAC=1;MLEAF=0.500;MQ=53.56;MQ0=0;MQRankSum=0.943;QD=6.86;ReadPosRankSum=-0.835;SB=0.00;SOR=0.136;VQSLOD=1.69;culprit=QD GT:AD:DP:GQ:PL 0/1:33,12:45:99:337,0,1147 2 96610787 . C CA 144.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.12;MQ0=0;MQRankSum=-2.638;QD=14.47;RPA=6,7;RU=A;ReadPosRankSum=-2.037;SB=0.00;SOR=1.609;STR;VQSLOD=1.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,7:10:54:182,0,54 2 96610899 . T C 1071.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=57.50;MQ0=0;MQRankSum=-2.128;QD=19.49;ReadPosRankSum=0.535;SB=-6.010e+02;SOR=0.859;VQSLOD=2.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,46:55:99:1100,0,152 2 96610952 rs62154595 T C 936.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.004;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=58.78;MQ0=0;MQRankSum=-1.235;QD=22.30;ReadPosRankSum=0.450;SB=-4.830e+02;SOR=0.613;VQSLOD=2.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,36:42:92:965,0,92 2 96611018 rs62154596 G A 548.78 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=54.75;MQ0=0;MQRankSum=0.290;QD=30.49;ReadPosRankSum=-1.335;SB=-3.976e+01;SOR=2.093;VQSLOD=0.737;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,16:18:25:577,0,25 2 96617194 rs75924615 A G 249.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.044;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.8920;MLEAC=1;MLEAF=0.500;MQ=49.19;MQ0=2;MQRankSum=-3.812;QD=6.75;ReadPosRankSum=-1.415;SB=-1.580e+02;SOR=0.582;VQSLOD=1.44;culprit=QD GT:AD:DP:GQ:PL 0/1:21,16:37:99:278,0,507 2 96617209 rs74343816 G T 279.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.00;MQ0=2;MQRankSum=-4.139;QD=8.23;ReadPosRankSum=-0.156;SB=-8.600e+01;SOR=0.859;VQSLOD=1.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,14:34:99:308,0,472 2 96617231 rs2443879 G A 258.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.877;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9989;MLEAC=1;MLEAF=0.500;MQ=48.33;MQ0=2;MQRankSum=-4.757;QD=9.24;ReadPosRankSum=1.570;SB=-2.501e+01;SOR=0.914;VQSLOD=0.938;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,14:28:99:287,0,388 2 96619612 rs143611798 C T 39.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=43.94;MQ0=1;MQRankSum=-3.067;QD=3.31;ReadPosRankSum=-1.434;SB=0.00;SOR=0.551;VQSLOD=1.72;culprit=QD GT:AD:DP:GQ:PL 0/1:6,6:12:68:68,0,213 2 96619641 rs200910276 A C 182.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.313;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.61;MQ0=1;MQRankSum=-4.101;QD=10.15;ReadPosRankSum=0.281;SB=-1.765e+00;SOR=1.981;VQSLOD=0.325;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,10:18:99:211,0,199 2 96619642 rs201891130 A T 179.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.331;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.61;MQ0=1;MQRankSum=-4.101;QD=9.99;ReadPosRankSum=0.187;SB=-1.765e+00;SOR=1.981;VQSLOD=0.338;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,10:18:99:208,0,228 2 96619896 rs78145567 A G 136.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.780;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=48.88;MQ0=0;MQRankSum=-3.382;QD=4.14;ReadPosRankSum=-1.274;SB=-2.657e-01;SOR=0.941;VQSLOD=1.24;culprit=QD GT:AD:DP:GQ:PL 0/1:23,10:33:99:165,0,635 2 96619966 rs76258649 A C 94.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.26;MQ0=0;MQRankSum=-3.224;QD=7.90;ReadPosRankSum=0.469;SB=0.00;SOR=0.446;VQSLOD=1.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,5:12:99:123,0,226 2 96619973 rs77716709 T C 84.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=50.57;MQ0=0;MQRankSum=-2.881;QD=8.48;ReadPosRankSum=-0.398;SB=0.00;SOR=0.693;VQSLOD=2.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,5:10:99:113,0,107 2 96684876 rs2579516 A G 556.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.21;SB=-3.940e+02;SOR=0.963;VQSLOD=4.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:42:585,42,0 2 96687426 rs200675258 CTG C 2312.73 PASS AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;QD=24.69;SB=-2.861e+02;SOR=3.611;VQSLOD=2.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:56:99:2350,141,0 2 96780716 rs2229169 T G 3765.77 PASS AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-2.323e+03;SOR=0.916;VQSLOD=4.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,127:127:99:3794,283,0 2 96780986 rs67393864 C CTCCTCCTCT 3806.73 PASS AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.14;MQ0=0;QD=30.89;RPA=1,2;RU=TCCTCCTCT;SB=-1.675e+03;SOR=1.002;STR;VQSLOD=5.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:47:99:3844,105,0 2 96795857 rs749458 T C 2058.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.28;SB=-1.228e+03;SOR=0.880;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2087,157,0 2 96934504 rs62153033 T C 356.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.005;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.763;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=-0.835;SB=-9.900e+01;SOR=0.306;VQSLOD=9.25;culprit=QD GT:AD:DP:GQ:PL 0/1:26,13:39:99:385,0,744 2 96934891 rs114072902 G A 581.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.592;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.272;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-1.276;SB=-1.600e+02;SOR=1.022;VQSLOD=7.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,22:46:99:610,0,625 2 96943473 rs3214063 T C 1392.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.876;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.557;SB=-7.500e+02;SOR=0.637;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:55,51:106:99:1421,0,1443 2 96950487 . C CT 363.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.66;RPA=12,13;RU=T;ReadPosRankSum=0.744;SB=-2.004e+01;SOR=1.112;STR;VQSLOD=8.52;culprit=QD GT:AD:DP:GQ:PL 0/1:22,20:57:99:401,0,406 2 96952833 rs3171927 A G 2506.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.569;DB;DP=207;Dels=0.00;ExcessHet=3.0103;FS=1.090;HaplotypeScore=1.9456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-1.775;SB=-1.341e+03;SOR=0.806;VQSLOD=6.81;culprit=DP GT:AD:DP:GQ:PL 0/1:119,88:207:99:2535,0,2853 2 96955480 rs3214058 T C 1024.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.893;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-0.672;SB=-3.370e+02;SOR=0.936;VQSLOD=8.43;culprit=FS GT:AD:DP:GQ:PL 0/1:51,38:89:99:1053,0,1365 2 96956315 rs772176 T G 2458.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.35;SB=-1.408e+03;SOR=0.693;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2487,184,0 2 96962859 rs17479466 A G 548.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.373;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.217;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=0.853;SB=-2.350e+02;SOR=1.061;VQSLOD=7.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,20:43:99:577,0,563 2 96966661 rs3731930 G C 701.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=0.979;SB=-1.750e+02;SOR=0.765;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:18,26:44:99:730,0,469 2 96970815 . A G 211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.990;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.29;ReadPosRankSum=0.763;SB=-3.500e+01;SOR=0.859;VQSLOD=8.36;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:240,0,188 2 96991492 rs772174 A G 5094.77 PASS AC=2;AF=1.00;AN=2;DB;DP=166;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-2.337e+03;SOR=1.405;VQSLOD=5.61;culprit=DP GT:AD:DP:GQ:PL 1/1:0,166:166:99:5123,367,0 2 96992723 rs145411973 T A 1122.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.523;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.81;ReadPosRankSum=-1.025;SB=-5.470e+02;SOR=0.676;VQSLOD=7.74;culprit=FS GT:AD:DP:GQ:PL 0/1:30,41:71:99:1151,0,802 2 96993757 rs2279105 C T 1027.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=13.441;HaplotypeScore=8.1663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-0.258;SB=-4.170e+02;SOR=1.297;VQSLOD=5.59;culprit=FS GT:AD:DP:GQ:PL 0/1:60,42:102:99:1056,0,1639 2 96993884 rs1048675 A G 775.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.734;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=20.454;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.62;ReadPosRankSum=0.137;SB=-2.980e+02;SOR=1.476;VQSLOD=3.73;culprit=FS GT:AD:DP:GQ:PL 0/1:56,34:90:99:804,0,1544 2 97020049 rs3731935 T C 1226.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.368;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=6.503;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-0.095;SB=-4.530e+02;SOR=1.329;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 0/1:57,47:104:99:1255,0,1420 2 97020170 rs3731936 A C 492.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.516;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.144;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=-0.379;SB=-4.176e+01;SOR=0.180;VQSLOD=9.66;culprit=SOR GT:AD:DP:GQ:PL 0/1:17,16:33:99:521,0,551 2 97026576 rs62153915 C T 268.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.353;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.92;ReadPosRankSum=0.803;SB=-4.276e+01;SOR=0.346;VQSLOD=8.97;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:297,0,200 2 97030247 rs2305935 T C 645.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.331;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=1.420;SB=-2.750e+02;SOR=0.793;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:25,24:49:99:674,0,632 2 97166204 rs3731938 A G 898.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=4.929;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.40;ReadPosRankSum=1.528;SB=-4.900e+02;SOR=1.060;VQSLOD=5.29;culprit=QD GT:AD:DP:GQ:PL 0/1:68,39:107:99:927,0,1838 2 97267260 rs6759099 G C 1552.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.51;SB=-5.290e+02;SOR=1.880;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1581,114,0 2 97267293 rs6749159 T C 1881.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.01;SB=-6.580e+02;SOR=1.692;VQSLOD=7.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1910,141,0 2 97267644 rs62154845 G A 1279.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.47;SB=-5.060e+02;SOR=1.556;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1308,102,0 2 97313450 rs60959055 C G 2658.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.90;SB=-1.143e+03;SOR=1.796;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,92:92:99:2687,205,0 2 97326286 rs4907246 T C 590.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.47;SB=0.00;SOR=5.549;VQSLOD=8.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:619,45,0 2 97529360 rs59271006 T A 2872.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;SB=-1.586e+03;SOR=0.959;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:92:99:2901,214,0 2 97530931 rs371058461 G A 1796.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.420;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=4.403;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.15;ReadPosRankSum=-0.288;SB=-9.850e+02;SOR=0.399;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 0/1:59,68:127:99:1825,0,1602 2 97544089 rs6750988 G C 690.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.54;SB=-8.097e+01;SOR=3.716;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:719,54,0 2 97559759 rs11677797 G A 2349.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-1.305e+03;SOR=0.798;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2378,181,0 2 97560629 rs13421275 C T 310.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.90;SB=-3.976e+01;SOR=3.611;VQSLOD=5.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:339,27,0 2 97560913 rs4907206 C T 1719.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=-6.720e+02;SOR=1.609;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1748,132,0 2 97595035 . G A 966.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.322;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.834;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.65;ReadPosRankSum=0.442;SB=-6.110e+02;SOR=0.768;VQSLOD=6.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,41:83:99:995,0,1152 2 97817429 rs113099198 A C 190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.810;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9400;MLEAC=1;MLEAF=0.500;MQ=42.76;MQ0=0;MQRankSum=-2.708;QD=6.58;ReadPosRankSum=0.877;SB=-9.515e+00;SOR=1.473;VQSLOD=1.32;culprit=QD GT:AD:DP:GQ:PL 0/1:18,11:29:99:219,0,505 2 97817450 rs146686632 C G 285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.620;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=40.67;MQ0=0;MQRankSum=-1.878;QD=8.40;ReadPosRankSum=0.937;SB=-1.120e+02;SOR=1.051;VQSLOD=0.615;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,19:34:99:314,0,425 2 97817469 rs62153866 T A 366.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.626;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5733;MLEAC=1;MLEAF=0.500;MQ=40.20;MQ0=0;MQRankSum=-0.954;QD=8.34;ReadPosRankSum=0.764;SB=-2.130e+02;SOR=0.641;VQSLOD=1.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,23:44:99:395,0,563 2 97833159 rs80186109 T A 126.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=45.28;MQ0=1;MQRankSum=-2.711;QD=8.45;ReadPosRankSum=-2.792;SB=0.00;SOR=0.693;VQSLOD=0.975;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,8:15:99:155,0,237 2 97833193 rs75122869 G A 122.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.496;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7337;MLEAC=1;MLEAF=0.500;MQ=42.69;MQ0=1;MQRankSum=-2.684;QD=6.14;ReadPosRankSum=-1.595;SB=-4.176e+01;SOR=0.223;VQSLOD=1.72;culprit=QD GT:AD:DP:GQ:PL 0/1:9,11:20:99:151,0,306 2 97833553 rs76811792 C T 185.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6624;MLEAC=1;MLEAF=0.500;MQ=47.15;MQ0=0;MQRankSum=0.653;QD=15.48;ReadPosRankSum=1.960;SB=-7.697e+01;SOR=0.368;VQSLOD=1.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,9:12:74:214,0,74 2 97833567 rs76160111 A G 63.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=49.34;MQ0=0;MQRankSum=-0.906;QD=6.38;ReadPosRankSum=-0.298;SB=-3.777e+01;SOR=0.160;VQSLOD=1.99;culprit=QD GT:AD:DP:GQ:PL 0/1:5,5:10:92:92,0,170 2 97871662 . A C 226.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.34;ReadPosRankSum=0.195;SB=-1.050e+02;SOR=0.693;VQSLOD=8.68;culprit=FS GT:AD:DP:GQ:PL 0/1:7,10:17:99:255,0,203 2 97882648 rs28404646 G A 554.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.67;SB=-7.397e+01;SOR=3.258;VQSLOD=5.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:45:583,45,0 2 97884763 rs4328671 T C 854.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=3;POSITIVE_TRAIN_SITE;QD=24.42;SB=-5.640e+02;SOR=0.957;VQSLOD=3.39;culprit=FS GT:AD:DP:GQ:PL 1/1:3,32:35:63:883,63,0 2 98795792 rs4851884 C G 3718.77 PASS AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7880;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.05;SB=-2.363e+03;SOR=0.895;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,128:128:99:3747,265,0 2 98795873 . T TG 4140.73 PASS AC=2;AF=1.00;AN=2;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.14;RPA=2,3;RU=G;SB=-1.511e+03;SOR=1.431;STR;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:105:99:4178,304,0 2 98796028 rs4241221 T A 538.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.29;SB=0.00;SOR=5.421;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:567,42,0 2 98797744 rs4851890 C T 1722.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;SB=-1.105e+02;SOR=4.804;VQSLOD=5.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1751,132,0 2 98804314 rs1466156 G A 1140.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;SB=-1.931e+02;SOR=3.321;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:90:1169,90,0 2 98811075 rs7579916 A G 1763.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;SB=-4.580e+02;SOR=2.670;VQSLOD=7.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1792,129,0 2 98833445 . A ACCC 414.74 PASS AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.65;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.46;RPA=3,6;RU=C;SB=-1.120e+02;SOR=2.303;STR;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:12:30:452,30,0 2 98844575 rs7606220 A G 1787.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.38;SB=-4.276e+01;SOR=6.229;VQSLOD=4.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1816,132,0 2 98844674 rs7601049 C G 4603.77 PASS AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-2.308e+03;SOR=1.288;VQSLOD=4.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,150:150:99:4632,331,0 2 98853173 rs11889349 G A 2604.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.56;SB=-1.024e+03;SOR=1.639;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2633,196,0 2 98853364 rs13033263 C A 451.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.06;SB=-4.076e+01;SOR=3.611;VQSLOD=7.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:480,36,0 2 98853373 rs13013876 G T 387.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.49;SB=-4.276e+01;SOR=3.442;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:416,33,0 2 98862097 rs4851121 A G 1994.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.19;SB=-2.860e+02;SOR=3.422;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:2023,150,0 2 98872662 . C CT 327.75 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;DP=21;ExcessHet=3.0103;FS=5.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.21;RPA=11,12;RU=T;ReadPosRankSum=0.771;SB=-2.405e+01;SOR=3.258;STR;VQSLOD=5.72;culprit=FS GT:AD:DP:GQ:PL 0/1:3,15:21:23:365,0,23 2 98928494 rs7587534 G A 3727.77 PASS AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=-1.618e+03;SOR=1.241;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,111:111:99:3756,280,0 2 98994134 rs2279859 A G 1127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=0.541;SB=-6.480e+02;SOR=0.730;VQSLOD=8.73;culprit=FS GT:AD:DP:GQ:PL 0/1:37,44:81:99:1156,0,929 2 98994414 rs937725 T C 503.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.158;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.335;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=0.777;SB=-1.020e+02;SOR=1.038;VQSLOD=7.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,18:45:99:532,0,764 2 99169207 . G T 1144.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.967;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.16;ReadPosRankSum=-0.906;SB=-7.120e+02;SOR=0.648;VQSLOD=7.85;culprit=FS GT:AD:DP:GQ:PL 0/1:41,46:87:99:1173,0,1068 2 99170722 . G A 409.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.382;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.81;ReadPosRankSum=-0.378;SB=-1.000e+02;SOR=0.560;VQSLOD=8.61;culprit=FS GT:AD:DP:GQ:PL 0/1:17,15:32:99:438,0,495 2 99170727 rs61748141 C T 505.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.672;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.693;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=0.265;SB=-9.700e+01;SOR=1.301;VQSLOD=7.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,19:35:99:534,0,482 2 99232873 rs6711099 T C 3133.77 PASS AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-1.533e+03;SOR=1.051;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:102:99:3162,235,0 2 99234586 . A AT 994.87 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=0.507;POSITIVE_TRAIN_SITE;QD=17.45;RPA=15,16;RU=T;ReadPosRankSum=0.556;SB=-1.941e+02;SOR=0.582;STR;VQSLOD=3.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,47:58:15:1032,0,15 2 99272802 rs11679648 G A 1356.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.949;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.738;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-1.166;SB=-6.730e+02;SOR=0.821;VQSLOD=7.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,53:107:99:1385,0,1362 2 99274653 rs2271670 T C 595.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.767;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.177;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.951;SB=-2.720e+02;SOR=1.085;VQSLOD=7.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,22:44:99:624,0,582 2 99295003 rs17021875 C A 167.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=-0.225;SB=-3.400e+01;SOR=0.569;VQSLOD=10.12;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:196,0,256 2 99725223 rs6542864 A G 1233.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.78;SB=0.00;SOR=7.054;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:93:1262,93,0 2 99725479 . A AT 2749.73 PASS AC=2;AF=1.00;AN=2;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;RPA=1,2;RU=T;SB=-6.790e+02;SOR=2.303;STR;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:63:99:2787,187,0 2 99725575 rs6733285 T C 383.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.11;SB=0.00;SOR=4.804;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:412,30,0 2 99726043 rs6733624 A G 986.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.48;SB=0.00;SOR=6.736;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:75:1015,75,0 2 99743419 rs13008171 G A 1098.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.32;SB=-2.740e+02;SOR=2.584;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:87:1127,87,0 2 99757696 rs76474684 T C 235.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.260;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.07;ReadPosRankSum=0.026;SB=-9.200e+01;SOR=0.963;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:16,10:26:99:264,0,392 2 99766927 . CT C 72.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.31;RPA=15,14;RU=T;ReadPosRankSum=0.917;SB=-3.500e+01;SOR=0.321;STR;VQSLOD=7.67;culprit=QD GT:AD:DP:GQ:PL 0/1:15,7:22:99:110,0,305 2 99771268 rs2516832 G C 383.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.52;SB=-1.851e+02;SOR=1.179;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:412,30,0 2 99771272 rs2632261 C T 378.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.14;SB=-1.971e+02;SOR=1.179;VQSLOD=5.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:407,30,0 2 99771533 rs2516834 C T 950.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.896;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.71;ReadPosRankSum=1.192;SB=-3.400e+02;SOR=0.843;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 1/1:1,31:32:36:979,36,0 2 99771590 rs2632260 G T 682.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-2.341e+02;SOR=1.828;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:711,54,0 2 99778985 rs2632277 T C 2713.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=-1.638e+03;SOR=0.716;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2742,202,0 2 99779131 rs2516835 T C 870.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.153;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-0.358;SB=-5.030e+02;SOR=0.774;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:29,35:64:99:899,0,859 2 99802820 rs6757661 A G 710.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.42;SB=-7.997e+01;SOR=3.716;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:739,54,0 2 99804642 rs10865030 T C 529.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.16;SB=-2.950e+02;SOR=0.804;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:558,42,0 2 99811894 rs7605843 C T 2980.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-1.004e+03;SOR=2.093;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:3009,223,0 2 99812070 rs1044575 G A 3939.77 PASS AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4543;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.18;SB=-1.738e+03;SOR=1.645;VQSLOD=5.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,135:135:99:3968,298,0 2 99859863 rs17760953 G A 509.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.037;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQ0=0;MQRankSum=1.081;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=0.476;SB=-3.590e+02;SOR=0.576;VQSLOD=0.185;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,24:50:99:538,0,715 2 99923088 rs13003899 T C 920.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.10;SB=-1.373e+02;SOR=3.180;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:69:949,69,0 2 99938942 rs12464785 A G 373.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.114;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=0.028;SB=-1.480e+02;SOR=0.207;VQSLOD=9.99;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,15:25:99:402,0,280 2 99939031 rs17022564 A G 548.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.464;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=2.499;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=-0.128;SB=-2.630e+02;SOR=0.330;VQSLOD=10.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,23:55:99:577,0,886 2 99954608 rs11893359 A G 411.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.675;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.817;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=0.363;SB=-1.060e+02;SOR=0.363;VQSLOD=9.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,17:35:99:440,0,542 2 99988453 rs11320097 CA C 480.73 PASS AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;RPA=4,3;RU=A;SB=0.00;SOR=5.549;STR;VQSLOD=8.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:19:45:518,45,0 2 99993176 rs10179343 G A 191.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.323;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=-2.204;SB=-3.300e+01;SOR=0.211;VQSLOD=9.53;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:11,9:20:99:220,0,358 2 99995458 rs200706463 AT A 226.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;DB;DP=21;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.80;RPA=15,14;RU=T;ReadPosRankSum=0.652;SB=-8.427e+01;SOR=0.223;STR;VQSLOD=8.26;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,13:21:99:264,0,157 2 99995517 rs11896520 C T 317.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.011;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=0.614;SB=-1.510e+02;SOR=0.784;VQSLOD=8.82;culprit=FS GT:AD:DP:GQ:PL 0/1:18,12:30:99:346,0,398 2 99995804 rs1376443 T C 2425.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.54;SB=-1.319e+03;SOR=0.979;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2454,178,0 2 99998561 rs2290256 C T 780.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-2.301e+02;SOR=2.215;VQSLOD=7.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:809,60,0 2 100006620 rs10187843 G T 1507.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-2.361e+02;SOR=3.611;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1536,120,0 2 100006890 . G GT 682.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;DP=115;ExcessHet=3.0103;FS=4.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.69;RPA=14,15;RU=T;ReadPosRankSum=0.467;SB=-3.000e+02;SOR=0.351;STR;VQSLOD=7.92;culprit=QD GT:AD:DP:GQ:PL 0/1:60,42:115:99:720,0,476 2 100006904 . T TA 1336.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.262;DP=109;ExcessHet=3.0103;FS=1.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.73;RPA=5,6;RU=A;ReadPosRankSum=-1.049;SB=-4.490e+02;SOR=0.898;STR;VQSLOD=3.43;culprit=QD GT:AD:DP:GQ:PL 0/1:48,57:109:99:1374,0,564 2 100017906 . C CAA 128.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.05;RPA=14,16;RU=A;ReadPosRankSum=-0.822;SB=-1.765e+00;SOR=1.802;STR;VQSLOD=6.14;culprit=QD GT:AD:DP:GQ:PL 0/1:8,8:21:99:166,0,217 2 100019496 rs2305354 A G 1385.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.48;SB=-7.660e+02;SOR=0.919;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1414,105,0 2 100019612 rs3087397 TG T 428.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.64;RPA=2,1;RU=G;ReadPosRankSum=1.387;SB=-1.550e+02;SOR=0.818;STR;VQSLOD=8.29;culprit=FS GT:AD:DP:GQ:PL 0/1:11,12:24:99:466,0,430 2 100021184 rs2290261 A G 849.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.476;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=2.162;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-1.107;SB=-2.260e+02;SOR=1.029;VQSLOD=7.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,32:73:99:878,0,1107 2 100022270 rs1053544 G A 426.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.260;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.56;ReadPosRankSum=-0.032;SB=-7.697e+01;SOR=0.238;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:8,15:23:99:455,0,183 2 100022617 rs13394927 G A 144.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.868;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.04;ReadPosRankSum=-0.188;SB=-3.300e+01;SOR=0.223;VQSLOD=9.73;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:173,0,433 2 100022772 rs717454 T C 1244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.897;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=1.989;HaplotypeScore=4.7339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=-1.032;SB=-4.230e+02;SOR=1.081;VQSLOD=7.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,46:85:99:1273,0,915 2 100029106 rs2242037 T C 813.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=0.00;SOR=6.184;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:842,63,0 2 100050740 rs13409359 A C 774.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.127;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=0.433;SB=-3.830e+02;SOR=0.665;VQSLOD=9.98;culprit=FS GT:AD:DP:GQ:PL 0/1:26,31:57:99:803,0,646 2 100055033 rs10175852 C A 113.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=-0.312;SB=-1.765e+00;SOR=1.371;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:142,0,251 2 100055158 rs3087399 T C 1102.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.514;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=3.328;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=1.699;SB=-3.450e+02;SOR=1.239;VQSLOD=6.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,40:80:99:1131,0,1024 2 100055506 rs3087386 A G 2395.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.27;SB=-1.410e+03;SOR=0.749;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2424,175,0 2 100058870 rs3087403 C T 1213.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.890;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=-0.392;SB=-7.590e+02;SOR=0.647;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:48,51:99:99:1242,0,1216 2 100068069 rs4851206 T C 503.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.329;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.210;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=0.172;SB=-2.901e+01;SOR=1.814;VQSLOD=6.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,17:34:99:532,0,468 2 100081323 rs28369943 C T 852.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-1.891e+02;SOR=2.753;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:28:66:881,66,0 2 100081561 rs66768903 A AAAGTC 1824.73 PASS AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.44;SB=-1.560e+02;SOR=4.003;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:1862,69,0 2 100210074 rs1047281 G C 2782.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.29;SB=-1.690e+03;SOR=0.714;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:2811,214,0 2 100210642 rs1047265 T C 5611.77 PASS AC=2;AF=1.00;AN=2;DB;DP=182;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6492;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=-3.363e+03;SOR=0.857;VQSLOD=5.04;culprit=DP GT:AD:DP:GQ:PL 1/1:0,182:182:99:5640,403,0 2 100288931 rs4851222 G A 937.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.930;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=5.068;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.756;SB=-4.090e+02;SOR=1.385;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 0/1:29,35:64:99:966,0,798 2 100343557 rs4851223 C T 2828.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-1.733e+03;SOR=0.736;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:2857,214,0 2 100454072 rs33922639 C CT 1352.73 PASS AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.86;SB=-3.041e+02;SOR=2.468;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:84:1390,84,0 2 100917054 rs58421146 C A 1966.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;SB=-5.600e+02;SOR=2.226;VQSLOD=4.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1995,150,0 2 100986859 rs58876304 A G 1898.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.21;SB=-1.172e+03;SOR=0.723;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:1927,141,0 2 100986964 rs1437971 A C 1020.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;SB=-3.240e+02;SOR=2.235;VQSLOD=7.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:75:1049,75,0 2 100986966 rs60131548 C G 1006.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-3.260e+02;SOR=2.235;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:75:1035,75,0 2 101010082 rs3748930 G C 5359.77 PASS AC=2;AF=1.00;AN=2;DB;DP=180;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-3.183e+03;SOR=0.993;VQSLOD=3.83;culprit=DP GT:AD:DP:GQ:PL 1/1:0,180:180:99:5388,403,0 2 101011724 rs2241811 C T 653.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.72;SB=-1.513e+02;SOR=2.737;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:51:682,51,0 2 101014247 rs4149517 C A 757.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-3.976e+01;SOR=4.712;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:786,60,0 2 101022963 rs7571659 A G 1345.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.82;SB=-5.060e+02;SOR=1.666;VQSLOD=7.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1374,99,0 2 101041163 rs2118466 T C 1114.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=-5.610e+02;SOR=1.002;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:84:1143,84,0 2 101086799 rs6755846 T C 418.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=0.00;SOR=4.977;VQSLOD=7.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:447,33,0 2 101086894 rs13385681 G A 592.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.067;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=4.790;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=0.168;SB=-8.100e+01;SOR=1.639;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 0/1:36,22:58:99:621,0,941 2 101086966 rs13411940 C T 1421.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.549;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.692;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-1.191;SB=-6.780e+02;SOR=0.817;VQSLOD=7.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:65,59:124:99:1450,0,1847 2 101087104 rs13414632 C T 1531.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.567;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=2.470;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-0.472;SB=-7.290e+02;SOR=0.486;VQSLOD=9.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:57,59:116:99:1560,0,1723 2 101087191 rs13388529 G C 1022.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.466;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=0.931;SB=-4.280e+02;SOR=0.712;VQSLOD=8.53;culprit=FS GT:AD:DP:GQ:PL 0/1:46,38:84:99:1051,0,1277 2 101087295 rs13430695 T C 347.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.077;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.725;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=1.367;SB=-5.900e+01;SOR=1.402;VQSLOD=6.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,15:35:99:376,0,540 2 101087303 rs13427972 A G 424.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.471;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.773;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=1.085;SB=-6.500e+01;SOR=1.230;VQSLOD=7.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,15:33:99:453,0,485 2 101087335 rs13414838 C A 181.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.429;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-1.047;SB=0.00;SOR=0.836;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:210,0,195 2 101087338 rs7604140 A G 149.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=0.906;SB=0.00;SOR=0.693;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:178,0,118 2 101095733 rs7561811 A G 1559.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.19;SB=-6.550e+02;SOR=1.514;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1588,117,0 2 101096802 rs7565675 A G 1765.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.43;SB=-6.610e+02;SOR=1.942;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:61:99:1794,138,0 2 101096834 rs13428749 C A 1389.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.502;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.836;HaplotypeScore=6.3001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=1.079;SB=-5.370e+02;SOR=0.861;VQSLOD=7.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,54:92:99:1418,0,894 2 101096860 rs7568519 T C 3018.77 PASS AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=-1.631e+03;SOR=1.103;VQSLOD=6.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:102:99:3047,220,0 2 101096872 rs7577785 G A 966.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=1.621;HaplotypeScore=5.0415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.04;ReadPosRankSum=-1.151;SB=-6.120e+02;SOR=0.500;VQSLOD=9.07;culprit=QD GT:AD:DP:GQ:PL 0/1:66,41:107:99:995,0,1763 2 101096903 rs13393776 T C 1725.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.150;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=1.546;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=0.134;SB=-1.137e+03;SOR=0.802;VQSLOD=7.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,71:114:99:1754,0,1139 2 101096960 rs1519654 C T 2830.77 PASS AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.59;SB=-1.385e+03;SOR=1.321;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,99:99:99:2859,208,0 2 101097343 rs12623984 C G 199.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=-0.549;SB=0.00;SOR=1.609;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:89:228,0,89 2 101125602 rs59673582 C T 574.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.635;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.544;HaplotypeScore=3.7401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=-1.075;SB=-1.370e+02;SOR=0.425;VQSLOD=9.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,23:47:99:603,0,731 2 101126124 rs1829479 T A 2267.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.85;SB=-2.271e+02;SOR=4.080;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2296,178,0 2 101179341 rs2970988 A G 1096.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.42;SB=-6.540e+02;SOR=0.902;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:81:1125,81,0 2 101179342 rs2309848 G A 519.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.715;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.247;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-1.224;SB=-3.000e+02;SOR=1.085;VQSLOD=7.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,22:40:99:548,0,396 2 101186088 rs1052117 C T 1283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.806;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.808;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=0.792;SB=-6.100e+02;SOR=0.559;VQSLOD=9.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,47:93:99:1312,0,1279 2 101437561 rs6542989 G A 968.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.958;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=0.051;SB=-6.360e+02;SOR=0.791;VQSLOD=8.38;culprit=FS GT:AD:DP:GQ:PL 0/1:41,41:82:99:997,0,946 2 101437601 rs6542990 C G 1090.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.177;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-0.739;SB=-6.870e+02;SOR=0.705;VQSLOD=8.82;culprit=FS GT:AD:DP:GQ:PL 0/1:36,43:79:99:1119,0,890 2 101437762 rs13390078 A G 96.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.299;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.84;ReadPosRankSum=0.044;SB=-1.611e+01;SOR=1.402;VQSLOD=4.86;culprit=QD GT:AD:DP:GQ:PL 0/1:15,5:20:99:125,0,375 2 101521173 rs57350721 ATT AT,A 365.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.187;DB;DP=26;ExcessHet=3.0103;FS=2.430;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.62;RPA=17,16,15;RU=T;ReadPosRankSum=-0.718;SB=-1.430e+02;SOR=0.799;STR;VQSLOD=4.34;culprit=MQRankSum GT:AD:DP:GQ:PL 1/2:3,9,10:26:99:403,148,167,122,0,210 2 101541270 rs13026599 A G 84.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=-0.930;SB=0.00;SOR=0.412;VQSLOD=9.74;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:99:113,0,203 2 101541798 rs356651 C T 646.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.352;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.168;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=0.683;SB=-1.970e+02;SOR=0.919;VQSLOD=7.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,26:55:99:675,0,765 2 101541872 rs34705978 C T 208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.573;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-0.640;SB=-6.900e+01;SOR=0.425;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:12,9:21:99:237,0,321 2 101564628 rs10207725 A G 1617.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-6.050e+02;SOR=1.893;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1646,117,0 2 101566070 rs3739005 C T 1275.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-4.350e+02;SOR=1.923;VQSLOD=7.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:96:1304,96,0 2 101580575 rs41280595 G A 2559.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.12;SB=-1.722e+03;SOR=0.820;VQSLOD=5.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:2588,190,0 2 101581246 rs7581886 C T 1425.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.0324;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-5.400e+02;SOR=1.562;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1454,108,0 2 101581976 rs4851392 A G 2149.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4083;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.52;SB=-2.391e+02;SOR=3.877;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:2178,166,0 2 101591304 rs2305160 A G 4773.77 PASS AC=2;AF=1.00;AN=2;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=-2.781e+03;SOR=0.706;VQSLOD=7.35;culprit=DP GT:AD:DP:GQ:PL 1/1:0,155:155:99:4802,358,0 2 101591710 rs34509802 G A 1309.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=-7.097e+01;SOR=4.921;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:99:1338,102,0 2 101594191 rs11541353 C T 2440.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.74;SB=-1.276e+03;SOR=0.997;VQSLOD=5.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2469,181,0 2 101609827 rs9223 C T 1210.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.526;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=0.352;SB=-7.680e+02;SOR=0.693;VQSLOD=8.56;culprit=FS GT:AD:DP:GQ:PL 0/1:48,48:96:99:1239,0,1176 2 101619283 rs2278724 C G 3086.77 PASS AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=-1.850e+03;SOR=0.859;VQSLOD=5.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:102:99:3115,226,0 2 101619321 rs2278723 T C 3379.77 PASS AC=2;AF=1.00;AN=2;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3286;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.91;SB=-1.952e+03;SOR=1.035;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,113:113:99:3408,244,0 2 101619377 rs72821045 C T 776.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=4.554;HaplotypeScore=3.4964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=1.028;SB=-2.690e+02;SOR=1.314;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 0/1:52,32:84:99:805,0,1284 2 101622728 rs10934 C T 1055.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.659;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=-1.637;SB=-5.830e+02;SOR=0.722;VQSLOD=8.49;culprit=FS GT:AD:DP:GQ:PL 0/1:62,42:104:99:1084,0,1663 2 101624471 rs746924 T C 3093.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-1.763e+03;SOR=0.802;VQSLOD=7.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:3122,226,0 2 101627925 rs1062062 C T 472.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.769;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.456;SB=-1.960e+02;SOR=0.892;VQSLOD=10.27;culprit=FS GT:AD:DP:GQ:PL 0/1:14,19:33:99:501,0,331 2 101635369 rs56291532 G A 541.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.911;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=4.981;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=1.175;SB=-1.980e+02;SOR=1.655;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 0/1:17,21:38:99:570,0,424 2 101635538 rs13007048 C T 231.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.391;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.62;ReadPosRankSum=-0.296;SB=-1.610e+02;SOR=0.446;VQSLOD=8.16;culprit=QD GT:AD:DP:GQ:PL 0/1:23,12:35:99:260,0,636 2 101638828 rs34685616 C T 1583.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.423;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=2.142;HaplotypeScore=5.2740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=-0.067;SB=-9.120e+02;SOR=0.514;VQSLOD=7.77;culprit=DP GT:AD:DP:GQ:PL 0/1:84,60:145:99:1612,0,2204 2 101638888 rs3739014 A G 4799.77 PASS AC=2;AF=1.00;AN=2;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.4177;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.19;SB=-2.646e+03;SOR=0.897;VQSLOD=6.73;culprit=DP GT:AD:DP:GQ:PL 1/1:0,159:159:99:4828,358,0 2 101645031 rs76060163 G A 675.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.676;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-1.816;SB=-1.960e+02;SOR=0.648;VQSLOD=9.05;culprit=FS GT:AD:DP:GQ:PL 0/1:27,26:53:99:704,0,795 2 101646359 rs12472882 G C 637.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.399;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.629;SB=-6.200e+01;SOR=0.527;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:25,21:46:99:666,0,740 2 101652732 rs4850957 C T 339.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.513;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=9.709;HaplotypeScore=1.8279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.29;ReadPosRankSum=-1.403;SB=-1.070e+02;SOR=0.048;VQSLOD=5.32;culprit=QD GT:AD:DP:GQ:PL 0/1:27,14:41:99:368,0,844 2 101652797 rs6543005 T C 394.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=0.00;SOR=5.136;VQSLOD=8.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:423,36,0 2 101656726 rs2289953 T C 5512.77 PASS AC=2;AF=1.00;AN=2;DB;DP=189;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.17;SB=-3.537e+03;SOR=0.747;VQSLOD=6.24;culprit=DP GT:AD:DP:GQ:PL 1/1:0,189:189:99:5541,406,0 2 101675808 rs7572457 A G 383.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.905;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.977;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-0.677;SB=-1.010e+02;SOR=0.257;VQSLOD=9.49;culprit=SOR GT:AD:DP:GQ:PL 0/1:19,15:34:99:412,0,563 2 101881549 rs3768995 A T 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.684;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.04;ReadPosRankSum=0.379;SB=-5.700e+01;SOR=0.495;VQSLOD=9.22;culprit=QD GT:AD:DP:GQ:PL 0/1:28,13:41:99:317,0,861 2 101883046 rs1660694 A G 337.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.315;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=1.207;SB=-3.501e+01;SOR=1.473;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:6,11:17:99:366,0,141 2 101898412 rs13151 G C 1255.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.949;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.840;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=-0.364;SB=-6.370e+02;SOR=0.801;VQSLOD=7.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,43:79:99:1284,0,982 2 101898623 . G A 83.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.44;ReadPosRankSum=-0.893;SB=0.00;SOR=0.223;VQSLOD=8.07;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:99:112,0,326 2 101898624 rs190810325 T C 96.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.44;ReadPosRankSum=-0.822;SB=0.00;SOR=0.223;VQSLOD=9.28;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:99:125,0,300 2 101925026 rs11123868 T C 797.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.604;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=1.089;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=1.326;SB=-3.060e+02;SOR=0.465;VQSLOD=9.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,33:66:99:826,0,860 2 101967346 . C T 1968.77 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.83;SB=-6.360e+02;SOR=2.165;VQSLOD=4.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:1997,147,0 2 101971618 rs6753727 T C 238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.872;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=1.039;SB=-1.765e+00;SOR=1.609;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:267,0,298 2 102000210 rs11694978 G A 586.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.359;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=3.873;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=1.875;SB=-1.780e+02;SOR=0.169;VQSLOD=9.12;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:20,24:44:99:615,0,660 2 102003633 rs11554173 G T 292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.643;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=-2.056;SB=-3.976e+01;SOR=0.330;VQSLOD=8.66;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,10:17:99:321,0,209 2 102003962 rs116287156 T C 60.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.08;ReadPosRankSum=-0.210;SB=0.00;SOR=0.223;VQSLOD=9.29;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:89:89,0,182 2 102018878 rs11123876 G A 1276.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.559;SB=-6.170e+02;SOR=0.627;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:47,45:92:99:1305,0,1237 2 102018908 rs2175968 A G 1171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=0.261;SB=-6.710e+02;SOR=0.627;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:49,45:94:99:1200,0,1367 2 102026853 . T TCACA 386.74 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.01;RPA=13,15;RU=CA;ReadPosRankSum=-0.524;SB=0.00;SOR=3.258;STR;VQSLOD=5.17;culprit=FS GT:AD:DP:GQ:PL 0/1:1,9:11:0:421,0,0 2 102029273 rs11689348 T C 319.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.477;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=1.481;SB=-3.777e+01;SOR=0.223;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:10,11:21:99:348,0,313 2 102029548 rs1554070 G A 677.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.370;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=-0.263;SB=-2.310e+02;SOR=0.397;VQSLOD=10.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,25:45:99:706,0,556 2 102031176 rs4851434 A G 2099.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;SB=-2.231e+02;SOR=4.029;VQSLOD=5.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:2128,154,0 2 102031489 rs4851435 C G 1587.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SB=-6.660e+02;SOR=1.877;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1616,117,0 2 102035192 rs6709913 C T 2768.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-1.513e+03;SOR=0.887;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2797,208,0 2 102038849 rs4851436 T A 4215.77 PASS AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.28;SB=-2.721e+03;SOR=0.809;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,144:144:99:4244,304,0 2 102045328 rs6543047 C T 300.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=1.818;SB=-3.401e+01;SOR=0.610;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:12,11:23:99:329,0,400 2 102067083 rs7585228 T C 1395.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SB=-1.022e+03;SOR=0.732;VQSLOD=4.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1424,99,0 2 102068872 rs4851449 T A 287.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.324;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.377;HaplotypeScore=4.6406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.46;ReadPosRankSum=-1.295;SB=-1.840e+02;SOR=0.432;VQSLOD=8.59;culprit=QD GT:AD:DP:GQ:PL 0/1:20,14:34:99:316,0,579 2 102069002 rs4851450 T C 97.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.099;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.52;ReadPosRankSum=0.245;SB=-3.500e+01;SOR=0.223;VQSLOD=9.60;culprit=QD GT:AD:DP:GQ:PL 0/1:10,5:15:99:126,0,319 2 102083183 rs4851455 T C 459.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=0.207;SB=-2.140e+02;SOR=0.527;VQSLOD=10.17;culprit=FS GT:AD:DP:GQ:PL 0/1:23,20:43:99:488,0,662 2 102083393 rs11680478 T C 989.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.819;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=2.054;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=1.099;SB=-5.080e+02;SOR=1.002;VQSLOD=7.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,35:65:99:1018,0,802 2 102314437 rs13430711 T C 413.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=-3.677e+01;SOR=3.611;VQSLOD=8.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:442,33,0 2 102315057 rs1567385 A G 691.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;SB=-2.391e+02;SOR=2.030;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:51:720,51,0 2 102440723 rs7601576 G A 295.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.65;SB=-1.603e+02;SOR=1.022;VQSLOD=4.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:24:324,24,0 2 102501891 rs57584884 A G 1610.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-1.603e+02;SOR=3.564;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1639,120,0 2 102503486 . CA C 50.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;DP=25;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.500;MQ=59.96;MQ0=0;MQRankSum=0.000;QD=2.21;RPA=20,19;RU=A;ReadPosRankSum=-0.936;SB=-5.150e-01;SOR=1.828;STR;VQSLOD=3.40;culprit=QD GT:AD:DP:GQ:PL 0/1:16,7:25:88:88,0,264 2 102632582 rs3819369 T A 158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.537;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-0.632;SB=-3.400e+01;SOR=0.368;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:9,6:15:99:187,0,281 2 102640871 rs3218974 A G 298.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.773;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=1.080;SB=0.00;SOR=0.317;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:17,10:27:99:327,0,503 2 102773999 rs2287048 C T 841.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.06;SB=-3.790e+02;SOR=1.536;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:63:870,63,0 2 102774054 rs2287047 G A 1328.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.53;SB=-6.800e+02;SOR=1.154;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1357,99,0 2 102782433 rs997049 T A 869.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.853;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=2.052;HaplotypeScore=2.7460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=-1.170;SB=-2.770e+02;SOR=1.176;VQSLOD=6.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,37:82:99:898,0,1176 2 102785158 rs3213735 G T 521.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.9177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.05;ReadPosRankSum=1.133;SB=-3.210e+02;SOR=0.512;VQSLOD=8.44;culprit=QD GT:AD:DP:GQ:PL 0/1:48,26:74:99:550,0,1189 2 102788125 rs3917304 G T 237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.481;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=-0.132;SB=0.00;SOR=0.540;VQSLOD=10.24;culprit=FS GT:AD:DP:GQ:PL 0/1:12,10:22:99:266,0,409 2 102788409 rs2041747 G A 3162.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.4079;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;SB=-7.740e+02;SOR=2.646;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:96:99:3191,244,0 2 102792760 rs3917318 A G 343.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.643;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=0.616;SB=-1.765e+00;SOR=1.609;VQSLOD=9.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,11:23:99:372,0,369 2 102804538 rs3835036 A AACC 855.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;DB;DP=29;ExcessHet=3.0103;FS=3.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.69;RPA=1,2;RU=ACC;ReadPosRankSum=-1.162;SB=-1.764e+00;SOR=2.356;STR;VQSLOD=4.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,16:29:99:893,0,582 2 102817954 rs2302623 A T 652.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.893;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=3.574;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.244;SB=-5.500e+01;SOR=1.712;VQSLOD=5.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,22:50:99:681,0,668 2 102957716 rs1420101 C T 455.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.777;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=4.156;HaplotypeScore=12.0263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.86;ReadPosRankSum=-0.008;SB=-1.320e+02;SOR=1.402;VQSLOD=6.50;culprit=QD GT:AD:DP:GQ:PL 0/1:40,18:60:99:484,0,1032 2 102960007 rs12905 G A 276.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.616;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.192;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=0.155;SB=-2.801e+01;SOR=1.460;VQSLOD=7.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,10:23:99:305,0,395 2 102979028 rs2287037 C T 282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=0.139;SB=-9.400e+01;SOR=0.941;VQSLOD=9.90;culprit=FS GT:AD:DP:GQ:PL 0/1:16,12:29:99:311,0,390 2 102984279 rs1420098 T C 1032.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.652;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.144;SB=-3.560e+02;SOR=0.575;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:41,41:82:99:1061,0,1151 2 103039584 rs3817465 A T 403.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.001;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=0.610;SB=-5.800e+01;SOR=0.963;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 0/1:12,15:27:99:432,0,327 2 103039873 rs2272127 C G 556.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.958;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=0.362;SB=-2.502e+01;SOR=0.892;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:15,18:34:99:585,0,486 2 103039929 rs2272128 G A 316.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.375;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.60;ReadPosRankSum=-0.800;SB=0.00;SOR=0.914;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:345,0,260 2 103040247 . T TG 391.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.67;RPA=1,2;RU=G;ReadPosRankSum=0.302;SB=-3.677e+01;SOR=0.293;STR;VQSLOD=9.76;culprit=FS GT:AD:DP:GQ:PL 0/1:11,14:25:99:429,0,381 2 103040249 rs2272129 C T 356.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.299;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.27;ReadPosRankSum=0.274;SB=-4.176e+01;SOR=0.293;VQSLOD=8.44;culprit=FS GT:AD:DP:GQ:PL 0/1:11,14:25:99:385,0,380 2 103049074 rs2310300 A G 95.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.968;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.84;ReadPosRankSum=0.908;SB=-3.101e+01;SOR=0.269;VQSLOD=9.52;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:14:99:124,0,325 2 103057892 rs11465702 A G 829.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.539;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-0.851;SB=-2.400e+02;SOR=0.728;VQSLOD=8.79;culprit=FS GT:AD:DP:GQ:PL 0/1:37,30:67:99:858,0,1064 2 103059613 rs1558651 A G 2285.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-1.328e+03;SOR=0.955;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2314,166,0 2 103063369 rs6708413 G A 271.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.931;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-1.280;SB=-1.050e+02;SOR=0.631;VQSLOD=10.01;culprit=FS GT:AD:DP:GQ:PL 0/1:9,12:21:99:300,0,247 2 103063520 rs11465723 G A 1027.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.664;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=1.030;HaplotypeScore=3.5536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-0.548;SB=-2.410e+02;SOR=0.892;VQSLOD=7.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,38:71:99:1056,0,1007 2 103095404 rs11692304 G A 611.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=0.457;SB=-3.900e+02;SOR=0.634;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:31,26:57:99:640,0,740 2 103095494 rs61731285 C T 1031.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.121;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=-0.510;SB=-5.460e+02;SOR=0.560;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:31,40:71:99:1060,0,916 2 103095531 rs61731286 T C 1320.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.985;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=-0.703;SB=-7.580e+02;SOR=0.642;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:37,47:84:99:1349,0,894 2 103120232 rs2075188 G A 585.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.874;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=4.427;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.396;SB=-2.290e+02;SOR=1.531;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 0/1:22,24:46:99:614,0,574 2 103120311 rs2075187 G A 575.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-1.513e+02;SOR=2.303;VQSLOD=7.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:604,45,0 2 103125457 rs6739301 A G 556.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.147;SB=-3.800e+02;SOR=0.770;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:16,25:41:99:585,0,434 2 103125466 rs6742381 T C 550.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=1.244;SB=-4.060e+02;SOR=0.662;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:17,25:42:99:579,0,436 2 103128866 rs4851609 T C 1078.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.31;SB=-6.570e+02;SOR=1.206;VQSLOD=4.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:81:1107,81,0 2 103130597 rs60883579 G A 678.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.828;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=-1.314;SB=-2.000e+02;SOR=0.616;VQSLOD=8.66;culprit=FS GT:AD:DP:GQ:PL 0/1:32,26:58:99:707,0,958 2 103136309 rs1403550 T C 2921.77 PASS AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6147;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.64;SB=-1.750e+03;SOR=0.773;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:102:99:2950,220,0 2 103136446 rs1403551 T G 1701.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SB=-5.660e+02;SOR=2.093;VQSLOD=7.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1730,126,0 2 103141447 rs2015478 A G 953.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.81;SB=-4.330e+02;SOR=1.473;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:72:982,72,0 2 103141651 rs1024798 G C 460.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.86;SB=-4.276e+01;SOR=3.611;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:489,36,0 2 103149100 rs1014286 G A 1512.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.38;SB=-6.790e+02;SOR=1.230;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1541,114,0 2 103149162 rs2008159 A G 1037.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-5.350e+02;SOR=1.244;VQSLOD=7.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:78:1066,78,0 2 103149182 rs2008157 A G 955.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.96;SB=-5.020e+02;SOR=1.022;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:72:984,72,0 2 103281417 rs11123944 A C 602.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.189;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=-1.160;SB=-1.060e+02;SOR=0.957;VQSLOD=10.23;culprit=FS GT:AD:DP:GQ:PL 0/1:17,21:38:99:631,0,510 2 103281960 rs6543176 A G 502.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.66;SB=0.00;SOR=5.283;VQSLOD=8.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:531,39,0 2 103300506 rs6757258 A G 2187.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-8.840e+02;SOR=1.745;VQSLOD=4.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2216,172,0 2 103311338 rs10589861 AGTTT A 854.73 PASS AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;RPA=2,1;RU=GTTT;SB=0.00;SOR=5.421;STR;VQSLOD=8.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:892,42,0 2 103334969 rs1052431 G A 1144.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=5.429;HaplotypeScore=3.8263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.34;ReadPosRankSum=0.637;SB=-3.430e+02;SOR=1.508;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 0/1:26,40:66:99:1173,0,599 2 103375056 rs2732838 T G 1296.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.446;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-2.001;SB=-8.100e+02;SOR=0.693;VQSLOD=9.02;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:54,50:104:99:1325,0,1316 2 103378581 rs5833037 CT C 111.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.32;RPA=16,15;RU=T;ReadPosRankSum=-1.796;SB=0.00;SOR=0.784;STR;VQSLOD=7.28;culprit=QD GT:AD:DP:GQ:PL 0/1:10,11:21:99:149,0,176 2 103378857 rs2540298 C G 1064.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.366;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=2.096;HaplotypeScore=2.8735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=1.514;SB=-2.260e+02;SOR=0.990;VQSLOD=7.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,37:77:99:1093,0,1168 2 103380998 rs2540296 C G 546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=8.921;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=0.629;SB=-2.901e+01;SOR=2.948;VQSLOD=5.38;culprit=FS GT:AD:DP:GQ:PL 0/1:10,17:27:99:575,0,259 2 103431404 rs887987 T C 1579.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.24;SB=-8.420e+02;SOR=1.382;VQSLOD=5.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1608,120,0 2 105489000 rs13392356 G C 149.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-0.204;SB=0.00;SOR=0.307;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:178,0,135 2 105489001 rs13418568 C A 131.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-0.700;SB=-1.765e+00;SOR=1.911;VQSLOD=7.97;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:160,0,132 2 105654716 rs3739160 C T 868.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.885;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=0.882;SB=-5.130e+02;SOR=0.786;VQSLOD=8.01;culprit=FS GT:AD:DP:GQ:PL 0/1:45,38:83:99:897,0,1261 2 105654830 rs3739159 G T 362.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=-0.670;SB=-1.765e+00;SOR=1.493;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 0/1:14,12:26:99:391,0,449 2 105665808 rs11538197 C T 323.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.979;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.378;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.52;ReadPosRankSum=-0.076;SB=-1.560e+02;SOR=0.437;VQSLOD=9.37;culprit=QD GT:AD:DP:GQ:PL 0/1:24,14:38:99:352,0,618 2 105696591 rs68154520 C T 283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.749;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=-0.980;SB=-4.076e+01;SOR=0.269;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:312,0,243 2 105705507 rs11538198 C T 464.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.327;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.45;ReadPosRankSum=-0.509;SB=-3.460e+02;SOR=0.527;VQSLOD=9.00;culprit=QD GT:AD:DP:GQ:PL 0/1:31,24:55:99:493,0,812 2 105706584 rs147318136 AAAAAC A 655.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=1.765;POSITIVE_TRAIN_SITE;QD=13.57;RPA=4,3;RU=AAAAC;ReadPosRankSum=1.130;SB=-1.160e+02;SOR=0.671;STR;VQSLOD=3.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,12:32:99:693,0,1055 2 105707766 rs12620254 G A 947.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.271;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.708;HaplotypeScore=1.6120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.77;ReadPosRankSum=-0.555;SB=-5.980e+02;SOR=0.573;VQSLOD=7.94;culprit=QD GT:AD:DP:GQ:PL 0/1:79,43:122:99:976,0,2172 2 105709023 rs6543282 T C 1732.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=-4.310e+02;SOR=2.794;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1761,138,0 2 105713697 . A G 1514.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.786;DP=142;Dels=0.00;ExcessHet=3.0103;FS=2.124;HaplotypeScore=2.9195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-1.127;SB=-1.039e+03;SOR=0.519;VQSLOD=6.59;culprit=DP GT:AD:DP:GQ:PL 0/1:76,66:142:99:1543,0,2020 2 105713868 rs10206662 A G 921.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.252;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=1.014;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=0.318;SB=-2.970e+02;SOR=0.939;VQSLOD=8.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,34:69:99:950,0,993 2 105713877 rs57214748 T C 819.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.472;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=4.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=1.697;SB=-1.880e+02;SOR=1.438;VQSLOD=6.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,28:60:99:848,0,828 2 105716266 rs9066 A G 760.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.711;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.899;HaplotypeScore=1.9971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=0.053;SB=-4.570e+02;SOR=0.839;VQSLOD=7.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,32:71:99:789,0,956 2 105885961 rs2241797 T C 1856.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.01;SB=-9.070e+02;SOR=0.914;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1885,141,0 2 105897003 rs2241799 G A 7321.77 PASS AC=2;AF=1.00;AN=2;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5131;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.29;SB=-3.750e+03;SOR=1.129;VQSLOD=4.37;culprit=DP GT:AD:DP:GQ:PL 1/1:0,250:250:99:7350,542,0 2 105897261 rs2679833 C T 556.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SB=-1.503e+02;SOR=2.179;VQSLOD=4.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:45:585,45,0 2 105924510 rs2241801 A G 4466.77 PASS AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8561;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-2.628e+03;SOR=0.721;VQSLOD=5.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,144:144:99:4495,337,0 2 105953909 rs2033727 G C 1135.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-4.780e+02;SOR=1.670;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:84:1164,84,0 2 105953938 rs33924571 G GC 2043.73 PASS AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.31;SB=-8.260e+02;SOR=1.179;VQSLOD=4.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:2081,129,0 2 105961703 rs2679842 G A 621.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.72;SB=-1.205e+02;SOR=2.948;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:51:650,51,0 2 105979730 rs2278502 C A 5149.77 PASS AC=2;AF=1.00;AN=2;DB;DP=161;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-1.946e+03;SOR=1.810;VQSLOD=5.74;culprit=DP GT:AD:DP:GQ:PL 1/1:0,161:161:99:5178,382,0 2 105994564 rs375669367 C CATCAA 2149.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;DB;DP=53;ExcessHet=3.0103;FS=3.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.80;ReadPosRankSum=0.806;SB=-1.090e+03;SOR=0.307;VQSLOD=5.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,30:53:99:2187,0,1619 2 106013147 rs34179780 C T 633.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.606;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.133;HaplotypeScore=1.9971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=-1.688;SB=-3.200e+02;SOR=1.013;VQSLOD=6.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,27:63:99:662,0,867 2 106013216 rs11891016 T C 458.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.231;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.390;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-0.734;SB=-2.330e+02;SOR=0.255;VQSLOD=10.42;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,20:35:99:487,0,415 2 106471327 rs7580718 C A 368.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=-1.382;SB=-3.000e+01;SOR=0.910;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:17,13:30:99:397,0,489 2 106471393 rs6543345 T C 1681.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.03;SB=-6.020e+02;SOR=1.942;VQSLOD=4.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1710,123,0 2 106471825 . C CA 409.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;DP=50;ExcessHet=3.0103;FS=7.322;MLEAC=1;MLEAF=0.500;MQ=60.22;MQ0=0;MQRankSum=1.070;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=9.53;RPA=12,13;RU=A;ReadPosRankSum=-0.146;SB=-1.004e+02;SOR=0.102;STR;VQSLOD=0.230;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,21:50:99:447,0,407 2 106509409 . G T 454.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.207;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.97;ReadPosRankSum=1.975;SB=-1.690e+02;SOR=0.582;VQSLOD=7.72;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:18,20:38:99:483,0,491 2 106682226 rs4271786 T C 293.94 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.60;ReadPosRankSum=-1.044;SB=-2.111e+02;SOR=0.346;VQSLOD=8.31;culprit=FS GT:AD:DP:GQ:PL 0/1:1,14:15:14:322,0,14 2 106682235 rs4266035 C G 321.18 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=-1.086;SB=-2.401e+02;SOR=0.412;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 0/1:1,15:16:10:349,0,10 2 106682317 rs17032271 A G 51.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.968;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=5.614;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.88;ReadPosRankSum=1.116;SB=-1.041e+01;SOR=1.472;VQSLOD=4.59;culprit=QD GT:AD:DP:GQ:PL 0/1:14,4:18:80:80,0,378 2 106682365 rs4477942 T G 228.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.888;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.60;ReadPosRankSum=0.569;SB=-1.100e+02;SOR=0.818;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:257,0,99 2 106688138 rs147962627 T C 430.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.633;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.755;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=1.350;SB=-1.980e+02;SOR=0.965;VQSLOD=6.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,17:41:99:459,0,648 2 106690137 rs4851111 G A 163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=0.437;SB=0.00;SOR=0.859;VQSLOD=10.29;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:192,0,171 2 106690557 rs41280611 G A 330.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.743;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.44;ReadPosRankSum=-0.592;SB=0.00;SOR=2.147;VQSLOD=8.17;culprit=FS GT:AD:DP:GQ:PL 0/1:3,10:13:80:359,0,80 2 106713480 rs17032319 C G 2137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.927;DB;DP=171;Dels=0.00;ExcessHet=3.0103;FS=1.252;HaplotypeScore=4.3973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=-0.473;SB=-1.006e+03;SOR=0.585;VQSLOD=7.24;culprit=DP GT:AD:DP:GQ:PL 0/1:91,79:171:99:2166,0,2717 2 106713834 rs10206639 C T 264.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.06;ReadPosRankSum=0.980;SB=0.00;SOR=1.981;VQSLOD=8.45;culprit=FS GT:AD:DP:GQ:PL 0/1:3,9:12:77:293,0,77 2 106715092 rs377014127 C A 552.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.338;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=8.338;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.16;ReadPosRankSum=-0.140;SB=-2.720e+02;SOR=0.105;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 0/1:18,24:42:99:581,0,532 2 106715342 rs3820891 G A 739.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-1.205e+02;SOR=3.352;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:768,60,0 2 106717274 rs3739136 A G 740.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.186;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.283;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=1.025;SB=-3.570e+02;SOR=0.521;VQSLOD=8.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,29:43:99:769,0,343 2 106717656 rs10177888 G A 486.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.011;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8477;MLEAC=1;MLEAF=0.500;MQ=59.66;MQ0=0;MQRankSum=-0.820;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=1.098;SB=0.00;SOR=0.922;VQSLOD=3.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,15:27:99:515,0,400 2 106742139 rs4851925 C T 2769.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-1.432e+03;SOR=1.046;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2798,214,0 2 106742177 rs3739137 T A 665.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.851;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.76;ReadPosRankSum=1.147;SB=-3.080e+02;SOR=0.665;VQSLOD=8.84;culprit=QD GT:AD:DP:GQ:PL 0/1:48,28:76:99:694,0,1217 2 106780055 rs33940045 C CTG 914.73 PASS AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.10;SB=-3.641e+02;SOR=1.244;VQSLOD=4.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:952,48,0 2 106782398 rs4851115 C G 839.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-8.197e+01;SOR=4.003;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:63:868,63,0 2 106810727 rs7604916 A G 646.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5546;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.04;SB=-3.240e+02;SOR=1.022;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:20:51:675,51,0 2 106810767 rs78870678 G T 299.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.624;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=-1.521;SB=-1.010e+02;SOR=1.329;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:3,12:15:53:328,0,53 2 106961664 . T TC 590.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;DP=39;ExcessHet=3.0103;FS=2.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.15;RPA=3,4;RU=C;ReadPosRankSum=0.422;SB=-2.750e+02;SOR=0.327;STR;VQSLOD=8.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,19:39:99:628,0,683 2 106961674 rs111559558 A G 446.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.202;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.886;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=0.639;SB=-3.260e+02;SOR=0.243;VQSLOD=9.58;culprit=SOR GT:AD:DP:GQ:PL 0/1:21,20:41:99:475,0,560 2 106992952 rs4641931 A G 835.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-4.220e+02;SOR=1.101;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:63:864,63,0 2 106992963 rs67031119 A AG 1202.73 PASS AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-5.200e+02;SOR=1.022;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:27:78:1240,78,0 2 107007576 rs60043380 A T 373.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.85;MQ0=0;MQRankSum=-0.734;POSITIVE_TRAIN_SITE;QD=23.36;ReadPosRankSum=0.159;SB=-1.115e+02;SOR=0.693;VQSLOD=3.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,14:16:38:402,0,38 2 107032130 . CA C 57.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.62;MQ0=0;MQRankSum=-1.210;POSITIVE_TRAIN_SITE;QD=2.62;RPA=23,22;RU=A;ReadPosRankSum=-0.444;SB=-1.772e+00;SOR=0.976;STR;VQSLOD=3.15;culprit=QD GT:AD:DP:GQ:PL 0/1:14,8:25:95:95,0,236 2 107032455 rs185034930 G A 1116.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.90;SB=-1.135e+02;SOR=4.047;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:90:1145,90,0 2 107107567 rs2228021 G C 5572.77 PASS AC=2;AF=1.00;AN=2;DB;DP=193;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6688;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=1;QD=28.87;SB=-3.293e+03;SOR=0.896;VQSLOD=4.12;culprit=DP GT:AD:DP:GQ:PL 1/1:0,193:193:99:5601,424,0 2 107107694 rs6543414 A G 2074.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.64;MQ0=2;POSITIVE_TRAIN_SITE;QD=33.46;SB=-3.800e+02;SOR=3.113;VQSLOD=7.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2103,160,0 2 107107765 rs6543415 C A 692.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=1;POSITIVE_TRAIN_SITE;QD=32.99;SB=-4.076e+01;SOR=4.615;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:57:721,57,0 2 107118896 rs4340514 T C 647.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-2.151e+02;SOR=1.828;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:51:676,51,0 2 107119136 rs4365459 G C 338.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=-4.276e+01;SOR=3.258;VQSLOD=7.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:367,27,0 2 107315030 . C T 211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.674;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.21;ReadPosRankSum=-1.703;SB=-1.240e+02;SOR=0.715;VQSLOD=3.69;culprit=QD GT:AD:DP:GQ:PL 0/1:14,9:23:99:240,0,336 2 107423188 rs1470591 G A 987.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.921;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.765;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=0.117;SB=-5.870e+02;SOR=0.544;VQSLOD=9.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:67,38:105:99:1016,0,1753 2 107423395 rs1470590 T G 733.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.297;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=0.252;SB=-4.670e+02;SOR=0.760;VQSLOD=9.20;culprit=FS GT:AD:DP:GQ:PL 0/1:42,29:71:99:762,0,1112 2 107429801 rs6739022 C T 422.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.363;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=1.485;SB=-3.301e+01;SOR=0.765;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:14,15:29:99:451,0,451 2 107446396 rs877693 T C 417.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.14;SB=-7.797e+01;SOR=2.833;VQSLOD=7.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:446,33,0 2 107446430 rs935565 T C 800.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.82;SB=-2.071e+02;SOR=2.400;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:829,60,0 2 107448988 rs12623034 C T 387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.133;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.824;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=-0.415;SB=-2.350e+02;SOR=0.269;VQSLOD=9.43;culprit=QD GT:AD:DP:GQ:PL 0/1:26,16:42:99:416,0,646 2 107450525 rs12615112 T C 886.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=-1.335;SB=-4.620e+02;SOR=0.595;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:39,39:78:99:915,0,1014 2 107450589 rs3796111 C T 867.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.789;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=2.987;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQ0=0;MQRankSum=1.207;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=-0.023;SB=-4.190e+02;SOR=1.142;VQSLOD=0.175;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,35:84:99:896,0,1231 2 107450727 rs149295926 TGC T 234.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=0.842;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=-0.805;SB=0.00;SOR=0.399;VQSLOD=3.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,6:15:99:272,0,482 2 107460474 rs12473361 T G 613.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.562;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=4.151;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-1.218;SB=-3.720e+02;SOR=0.310;VQSLOD=9.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,27:51:99:642,0,698 2 108443511 rs7576738 C G 211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.348;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.28;MQ0=0;MQRankSum=-1.111;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=1.020;SB=-9.300e+01;SOR=0.446;VQSLOD=2.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,8:15:99:240,0,164 2 108443567 rs62159106 G A 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.88;MQ0=0;MQRankSum=-0.728;POSITIVE_TRAIN_SITE;QD=21.88;ReadPosRankSum=-0.105;SB=-7.497e+01;SOR=0.223;VQSLOD=2.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,7:10:83:247,0,83 2 108475958 rs142985549 A G 2285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.791;DB;DP=164;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.53;MQ0=0;MQRankSum=0.513;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=1.142;SB=-1.172e+03;SOR=0.660;VQSLOD=6.400e-03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:79,85:164:99:2314,0,2011 2 108496435 rs832352 T A 580.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.511;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.670;HaplotypeScore=1.7326;MLEAC=1;MLEAF=0.500;MQ=51.26;MQ0=0;MQRankSum=-0.527;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=-0.230;SB=-3.200e+02;SOR=0.190;VQSLOD=0.087;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,24:49:99:609,0,680 2 108507268 rs148942086 T C 546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.278;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.64;MQ0=0;MQRankSum=-0.046;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=-0.545;SB=-3.580e+02;SOR=0.596;VQSLOD=3.75;culprit=FS GT:AD:DP:GQ:PL 0/1:9,23:32:99:575,0,207 2 108618540 rs3731683 G A 877.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.401;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=7.985;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=0.238;SB=-5.250e+02;SOR=0.157;VQSLOD=7.82;culprit=FS GT:AD:DP:GQ:PL 0/1:22,32:54:99:906,0,567 2 108622812 rs35097745 TTA T 996.73 PASS AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.80;RPA=3,2;RU=TA;SB=-1.863e+02;SOR=2.737;STR;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:25:66:1034,66,0 2 108863544 . A G 264.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.48;ReadPosRankSum=0.728;SB=0.00;SOR=2.303;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 0/1:2,8:10:45:293,0,45 2 108863767 rs9308806 A C 3460.77 PASS AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.84;SB=-2.339e+03;SOR=0.796;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,120:120:99:3489,247,0 2 108863898 rs10209928 C T 1191.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-2.151e+02;SOR=3.145;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:96:1220,96,0 2 108875093 rs2198463 T A 1253.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.89;SB=-2.750e+02;SOR=2.774;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:96:1282,96,0 2 108875198 rs2219078 G A 3244.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-1.564e+03;SOR=1.314;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3273,238,0 2 108875244 rs6722745 T C 3614.77 PASS AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-2.116e+03;SOR=0.795;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,122:122:99:3643,271,0 2 108875471 rs13385082 G T 3369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.63;SB=-1.887e+03;SOR=0.931;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,110:110:99:3398,250,0 2 108877062 rs4141932 T A 1231.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-3.870e+02;SOR=2.133;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:96:1260,96,0 2 108877316 rs4141933 T C 240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.805;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=-1.190;SB=0.00;SOR=0.693;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:269,0,253 2 108910868 . C T 163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.70;ReadPosRankSum=0.882;SB=0.00;SOR=0.473;VQSLOD=8.32;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:192,0,264 2 108915136 rs7590599 T C 419.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.086;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.46;ReadPosRankSum=-1.606;SB=-1.930e+02;SOR=0.774;VQSLOD=8.34;culprit=QD GT:AD:DP:GQ:PL 0/1:47,18:65:99:448,0,1073 2 108915263 rs4149422 C T 207.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.561;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=0.249;SB=-9.900e+01;SOR=0.399;VQSLOD=10.27;culprit=FS GT:AD:DP:GQ:PL 0/1:12,9:21:99:236,0,357 2 108938552 rs1879495 T G 465.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.27;SB=-7.597e+01;SOR=2.985;VQSLOD=7.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:494,36,0 2 108945764 rs13383219 A G 138.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.106;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.16;ReadPosRankSum=-0.201;SB=0.00;SOR=0.293;VQSLOD=8.95;culprit=QD GT:AD:DP:GQ:PL 0/1:11,6:17:99:167,0,368 2 108945782 rs13408865 C T 198.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.568;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=-0.341;SB=-2.901e+01;SOR=0.283;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:14,8:22:99:227,0,454 2 108946033 rs17036144 C T 911.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.238;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=14.306;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=-0.607;SB=-5.500e+02;SOR=0.100;VQSLOD=4.92;culprit=FS GT:AD:DP:GQ:PL 0/1:29,36:65:99:940,0,856 2 108946069 rs17036146 G A 787.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.323;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=15.894;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=1.110;SB=-4.370e+02;SOR=0.045;VQSLOD=4.54;culprit=FS GT:AD:DP:GQ:PL 0/1:20,31:51:99:816,0,612 2 108946131 rs72941177 A T 521.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=-1.121;SB=-2.511e+02;SOR=0.368;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 0/1:6,22:28:99:550,0,99 2 108946156 rs6753034 T C 661.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;SB=-1.931e+02;SOR=2.303;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:51:690,51,0 2 108946178 rs6709159 A G 506.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=-1.095e+02;SOR=2.584;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:39:535,39,0 2 108968944 . G GA 629 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;DP=40;ExcessHet=3.0103;FS=4.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.66;RPA=10,11;RU=A;ReadPosRankSum=0.799;SB=-5.109e+01;SOR=3.056;STR;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 0/1:4,28:40:12:666,0,12 2 108994808 rs1402467 C G 2058.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=-4.800e+02;SOR=2.494;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2087,150,0 2 108998797 rs374478497 A AG 1599.73 PASS AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.57;SB=-3.810e+02;SOR=2.387;VQSLOD=5.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1637,165,0 2 108998798 rs4149434 T A 1734.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=55.6975;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.73;SB=-5.200e+02;SOR=2.259;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:55:99:1763,132,0 2 108999483 . C CA 58.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;DP=14;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.20;RPA=18,19;RU=A;ReadPosRankSum=-0.375;SB=-9.733e-01;SOR=2.303;STR;VQSLOD=3.97;culprit=QD GT:AD:DP:GQ:PL 0/1:8,6:14:96:96,0,118 2 108999786 rs4149436 T C 1862.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=-7.750e+02;SOR=1.412;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1891,138,0 2 109065858 rs2460947 T C 1229.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-7.240e+02;SOR=0.693;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:96:1258,96,0 2 109066234 rs377365761 AT A 147.75 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.47;RPA=13,12;RU=T;SB=-2.777e+01;SOR=2.833;STR;VQSLOD=4.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,8:10:24:185,24,0 2 109067428 rs372242912 G A 631.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.955;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.466;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.92;ReadPosRankSum=-1.104;SB=-3.980e+02;SOR=0.293;VQSLOD=8.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,27:53:99:660,0,650 2 109069008 rs2683797 T C 1950.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.12;SB=-9.740e+02;SOR=1.410;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:1979,138,0 2 109085212 rs2718707 C T 455.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;SB=0.00;SOR=5.283;VQSLOD=8.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:484,39,0 2 109089404 rs2243888 C G 509.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.32;SB=-2.471e+02;SOR=1.493;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:39:538,39,0 2 109098998 rs2577615 A G 370.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.71;SB=-3.876e+01;SOR=3.442;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:399,30,0 2 109099477 rs2577613 A G 732.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-3.160e+02;SOR=1.519;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:54:761,54,0 2 109099572 rs2718698 C G 768.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-2.720e+02;SOR=1.802;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:57:797,57,0 2 109104356 . AT A 341.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=0.842;QD=11.02;RPA=23,22;RU=T;ReadPosRankSum=0.516;SB=-4.301e+01;SOR=1.270;STR;VQSLOD=1.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,25:52:50:269,0,50 2 109109325 rs143344405 TAAGA T 950.73 PASS AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.33;RPA=2,1;RU=AAGA;SB=-6.676e+01;SOR=4.174;STR;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:22:48:988,48,0 2 109116613 rs201760694 CAT C 742.73 PASS AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.70;RPA=3,2;RU=AT;SB=-2.931e+02;SOR=1.244;STR;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:19:48:780,48,0 2 109123996 rs2577596 T G 898.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;SB=-3.530e+02;SOR=1.839;VQSLOD=5.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:66:927,66,0 2 109292280 rs7584953 T C 4084.77 PASS AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-1.477e+03;SOR=1.721;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,130:130:99:4113,301,0 2 109294588 rs145969561 A T 2716.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9198;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-9.720e+02;SOR=1.954;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2745,205,0 2 109297017 rs59337195 AAAAG A 789.73 PASS AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=-6.097e+01;SOR=3.500;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:827,54,0 2 109328961 rs369417796 C T 141.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.682;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.13;ReadPosRankSum=-0.500;SB=-6.500e+01;SOR=0.804;VQSLOD=8.45;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:170,0,220 2 109347947 rs826526 T G 321.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.656;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=2.491;SB=-3.600e+01;SOR=1.244;VQSLOD=7.73;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,11:18:99:350,0,183 2 109352503 rs826578 A G 386.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.803;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.269;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.16;MQ0=0;MQRankSum=-2.213;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-0.077;SB=-2.302e+01;SOR=1.536;VQSLOD=0.021;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,14:26:99:415,0,357 2 109352542 rs826577 G A 395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.324;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.31;MQ0=1;MQRankSum=-2.669;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=-0.747;SB=-6.400e+01;SOR=0.877;VQSLOD=3.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,18:38:99:424,0,649 2 109352744 rs826576 C T 375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.188;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQ0=0;MQRankSum=-1.615;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=-0.017;SB=-8.700e+01;SOR=0.649;VQSLOD=3.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,15:35:99:404,0,583 2 109357252 rs4012070 T TTAAAA 459.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.72;MQ0=0;MQRankSum=-3.923;POSITIVE_TRAIN_SITE;QD=17.24;ReadPosRankSum=-0.984;SB=0.00;SOR=0.495;VQSLOD=2.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,7:16:99:497,0,697 2 109388846 rs700876 G A 202.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.355;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=1.777;SB=-1.020e+02;SOR=0.446;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:10,8:18:99:231,0,294 2 109389124 rs700875 A T 100.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.20;ReadPosRankSum=0.386;SB=-3.401e+01;SOR=0.269;VQSLOD=8.96;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:14:99:129,0,284 2 109389463 rs826580 G A 3002.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SB=-1.796e+03;SOR=0.813;VQSLOD=5.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3031,220,0 2 109393522 rs58272304 TG T 1617.73 PASS AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.82;RPA=4,3;RU=G;SB=-2.051e+02;SOR=3.716;STR;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1655,126,0 2 109393774 rs371189636 A T 62.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.41;ReadPosRankSum=2.279;SB=-5.150e-01;SOR=0.954;VQSLOD=6.20;culprit=QD GT:AD:DP:GQ:PL 0/1:21,5:26:91:91,0,582 2 109393779 rs375449172 A T 71.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.26;ReadPosRankSum=2.769;SB=-9.732e-01;SOR=0.576;VQSLOD=6.57;culprit=QD GT:AD:DP:GQ:PL 0/1:18,4:22:99:100,0,586 2 109393780 rs367803624 G T 71.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.448;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.26;ReadPosRankSum=2.770;SB=-9.732e-01;SOR=0.576;VQSLOD=6.55;culprit=QD GT:AD:DP:GQ:PL 0/1:18,4:22:99:100,0,591 2 109393781 rs371705935 A T 65.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.818;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.13;ReadPosRankSum=2.734;SB=-9.732e-01;SOR=0.631;VQSLOD=6.26;culprit=QD GT:AD:DP:GQ:PL 0/1:17,4:21:94:94,0,543 2 109393787 . C T 83.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.685;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.65;ReadPosRankSum=2.392;SB=-9.732e-01;SOR=0.846;VQSLOD=6.78;culprit=QD GT:AD:DP:GQ:PL 0/1:14,4:18:99:112,0,453 2 109393806 . T A 94.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.29;ReadPosRankSum=0.741;SB=0.00;SOR=0.223;VQSLOD=7.91;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:99:123,0,318 2 109404474 . C CT 380.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.29;RPA=11,12;RU=T;ReadPosRankSum=1.140;SB=-1.820e+02;SOR=0.582;STR;VQSLOD=8.11;culprit=FS GT:AD:DP:GQ:PL 0/1:18,19:37:99:418,0,326 2 109408208 rs6740879 G A 110.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.801;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=4.925;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.26;ReadPosRankSum=1.139;SB=-3.539e+00;SOR=1.923;VQSLOD=5.46;culprit=QD GT:AD:DP:GQ:PL 0/1:21,5:26:99:139,0,578 2 109411248 rs111234702 GAATAT G 778.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.713;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQ0=0;MQRankSum=0.873;POSITIVE_TRAIN_SITE;QD=24.59;RPA=2,1;RU=AATAT;ReadPosRankSum=0.719;SB=0.00;SOR=1.292;STR;VQSLOD=3.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,12:24:99:816,0,491 2 109414977 . A G 380.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.989;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.31;ReadPosRankSum=0.991;SB=-1.490e+02;SOR=0.636;VQSLOD=8.37;culprit=FS GT:AD:DP:GQ:PL 0/1:8,14:22:99:409,0,221 2 109429146 rs975597 T A 539.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.275;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=10.786;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.00;ReadPosRankSum=-0.176;SB=-2.890e+02;SOR=0.122;VQSLOD=5.40;culprit=FS GT:AD:DP:GQ:PL 0/1:32,22:54:99:568,0,941 2 109489753 rs71383811 AATG A 485.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.08;RPA=2,1;RU=ATG;ReadPosRankSum=-0.197;SB=0.00;SOR=0.693;STR;VQSLOD=8.78;culprit=FS GT:AD:DP:GQ:PL 0/1:11,11:22:99:523,0,554 2 109490104 rs6737810 A G 814.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.57;SB=0.00;SOR=6.184;VQSLOD=7.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:843,63,0 2 109513321 rs7607563 C A 3286.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-1.251e+03;SOR=1.774;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3315,247,0 2 109513654 rs12623957 G A 4800.77 PASS AC=2;AF=1.00;AN=2;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5726;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-1.987e+03;SOR=1.670;VQSLOD=5.97;culprit=DP GT:AD:DP:GQ:PL 1/1:0,158:158:99:4829,367,0 2 109513786 rs3789738 A T 638.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.26;ReadPosRankSum=0.604;SB=-1.720e+02;SOR=0.616;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:15,22:37:99:667,0,474 2 109522720 rs260639 G A 545.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.523;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=0.425;SB=-1.460e+02;SOR=0.350;VQSLOD=9.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,22:39:99:574,0,445 2 109522747 rs3833574 CT C 528.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801;DB;DP=51;ExcessHet=3.0103;FS=2.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;RPA=8,7;RU=T;ReadPosRankSum=-0.792;SB=-1.280e+02;SOR=1.258;STR;VQSLOD=7.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,25:51:99:566,0,654 2 109523038 rs260638 G T 184.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.80;ReadPosRankSum=0.542;SB=-4.276e+01;SOR=0.399;VQSLOD=8.89;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:213,0,132 2 109524105 rs11306434 CA C 366.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;DB;DP=24;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.500;MQ=60.45;MQ0=0;MQRankSum=0.559;POSITIVE_TRAIN_SITE;QD=15.28;RPA=12,11;RU=A;ReadPosRankSum=-0.698;SB=-7.009e+01;SOR=1.802;STR;VQSLOD=0.347;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,20:24:41:404,0,41 2 109526969 rs260632 G A 5983.77 PASS AC=2;AF=1.00;AN=2;DB;DP=196;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-3.384e+03;SOR=0.992;VQSLOD=6.05;culprit=DP GT:AD:DP:GQ:PL 1/1:0,196:196:99:6012,439,0 2 109527087 rs260631 G A 1755.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.047;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=1.307;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=1.194;SB=-7.590e+02;SOR=0.826;VQSLOD=7.17;culprit=DP GT:AD:DP:GQ:PL 0/1:91,64:155:99:1784,0,2200 2 109527373 rs260630 A G 4387.77 PASS AC=2;AF=1.00;AN=2;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.24;SB=-1.619e+03;SOR=1.758;VQSLOD=5.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,132:132:99:4416,316,0 2 109539653 rs260643 A G 628.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.358;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.218;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=2.083;SB=-1.950e+02;SOR=1.168;VQSLOD=6.67;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:26,27:53:99:657,0,746 2 109745782 rs200435574 TGGCCGGTCCCCGCCACGCA T 2510.73 PASS AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.04;RPA=2,1;RU=GGCCGGTCCCCGCCACGCA;SB=-6.385e+02;SOR=1.981;STR;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:23:36:2548,36,0 2 109745929 rs1367274 C G 282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=1.952;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=1.037;SB=-1.860e+02;SOR=0.307;VQSLOD=9.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,12:18:99:311,0,149 2 109929855 rs7584669 T C 206.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.569;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=-0.810;SB=0.00;SOR=0.693;VQSLOD=8.30;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:235,0,232 2 109929861 rs10200501 A C 216.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=-0.056;SB=0.00;SOR=0.582;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:245,0,215 2 109929958 rs6748434 A G 1117.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.365;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=1.193;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=0.700;SB=-2.010e+02;SOR=1.042;VQSLOD=7.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,37:70:99:1146,0,940 2 109930323 rs4494781 G A 653.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.915;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=6.537;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQ0=0;MQRankSum=1.530;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=0.270;SB=-7.497e+01;SOR=0.074;VQSLOD=0.179;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,21:44:99:682,0,778 2 109930355 . T TG 554.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=1.483;POSITIVE_TRAIN_SITE;QD=17.34;RPA=1,2;RU=G;ReadPosRankSum=0.981;SB=0.00;SOR=0.693;STR;VQSLOD=3.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,16:34:99:592,0,583 2 109964431 rs6725756 C T 1169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.836;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=1.106;HaplotypeScore=2.9327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=0.123;SB=-3.400e+02;SOR=0.954;VQSLOD=6.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,42:67:99:1198,0,587 2 109988215 rs11680644 C G 140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=-0.973;SB=0.00;SOR=1.022;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:9,5:14:99:169,0,252 2 110015309 rs10181644 T C 1823.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.580;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=-1.629;SB=-8.650e+02;SOR=0.756;VQSLOD=8.88;culprit=FS GT:AD:DP:GQ:PL 0/1:61,66:127:99:1852,0,1434 2 110053209 rs7370446 T G 795.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.697;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=0.490;SB=-3.670e+02;SOR=0.801;VQSLOD=8.82;culprit=FS GT:AD:DP:GQ:PL 0/1:34,29:63:99:824,0,868 2 110053248 rs7369523 C T 830.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.330;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=4.651;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=-0.464;SB=-4.760e+02;SOR=0.426;VQSLOD=8.47;culprit=FS GT:AD:DP:GQ:PL 0/1:39,33:72:99:859,0,1017 2 110372192 rs6594048 A G 1091.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.12;SB=-2.391e+02;SOR=2.765;VQSLOD=7.18;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,32:32:81:1120,81,0 2 110373197 rs1560884 G A 3037.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.08;SB=-9.530e+02;SOR=1.809;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:3066,229,0 2 110855123 rs2004273 G T 2878.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-1.438e+03;SOR=1.190;VQSLOD=5.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:2907,214,0 2 110873470 . G GA 342.76 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.31;MQ0=0;MQRankSum=1.321;POSITIVE_TRAIN_SITE;QD=17.14;RPA=14,15;RU=A;ReadPosRankSum=1.892;SB=-8.151e+01;SOR=0.399;STR;VQSLOD=3.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,16:23:22:380,0,22 2 110882699 rs2048243 A G 2126.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-8.160e+02;SOR=1.852;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2155,154,0 2 110886686 rs35963554 A AGACCAGAT 5370.73 PASS AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.73;SB=-1.814e+03;SOR=1.562;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:49:99:5408,144,0 2 110889108 rs11240790 C T 369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;SB=0.00;SOR=4.804;VQSLOD=8.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:398,30,0 2 110902262 rs3752863 G A 355.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=0.00;SOR=4.804;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:384,30,0 2 110905664 rs1509417 G A 741.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.72;SB=-1.005e+02;SOR=3.258;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:770,60,0 2 110919321 rs2271244 C T 1314.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.87;SB=-1.941e+02;SOR=3.611;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1343,105,0 2 110922703 rs11675767 C T 1535.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.48;SB=-1.076e+03;SOR=0.762;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1564,111,0 2 110935867 rs2271245 A G 988.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.11;SB=0.00;SOR=6.518;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:75:1017,75,0 2 110942150 rs881302 G A 727.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.99;SB=-4.470e+02;SOR=0.997;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:54:756,54,0 2 110942656 rs2018711 A G 308.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.73;SB=-1.941e+02;SOR=1.022;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:24:337,24,0 2 110942694 rs1810097 T C 379.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.13;SB=-2.540e+02;SOR=0.693;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:30:408,30,0 2 110959898 rs11240794 C G 3794.77 PASS AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-1.125e+03;SOR=2.344;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,116:116:99:3823,277,0 2 111406724 . T TCA 205.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.078;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;RPA=11,12;RU=CA;ReadPosRankSum=-0.409;SB=-1.765e+00;SOR=1.136;STR;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:11,7:19:99:243,0,401 2 111556245 rs191965268 T C 1869.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;DB;DP=201;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.30;ReadPosRankSum=-1.003;SB=-1.202e+03;SOR=0.736;VQSLOD=5.59;culprit=DP GT:AD:DP:GQ:PL 0/1:122,79:201:99:1898,0,3150 2 111598958 rs1554005 C T 564.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=3.797;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.61;ReadPosRankSum=0.469;SB=-9.600e+01;SOR=1.852;VQSLOD=6.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,19:34:99:593,0,373 2 111721142 rs139200296 ATGTGTGTGTGTGTGTGTGTG A,ATGTGTGTGTGTG 9914.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.83;RPA=19,9,15;RU=TG;SB=-3.714e+03;SOR=1.197;STR;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/2:0,36,25:77:99:9952,2121,3021,5042,0,4858 2 111721180 . G T 858.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.841;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.809;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.04;ReadPosRankSum=0.217;SB=-5.320e+02;SOR=0.432;VQSLOD=6.91;culprit=QD GT:AD:DP:GQ:PL 0/1:57,38:95:99:887,0,1554 2 111744435 rs12993549 A C 292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.246;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=1.074;SB=-3.677e+01;SOR=0.129;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:19:99:321,0,247 2 111753449 rs3761707 G C 1394.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.089;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=2.780;HaplotypeScore=4.5953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=1.573;SB=-6.710e+02;SOR=0.442;VQSLOD=9.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,57:103:99:1423,0,1214 2 111789092 rs3789090 G A 1214.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.595;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=6.693;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=-0.993;SB=-5.120e+02;SOR=0.211;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:40,47:87:99:1243,0,1216 2 111850427 rs77311714 T G 211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.753;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.908;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.23;ReadPosRankSum=-0.976;SB=-2.004e+01;SOR=1.247;VQSLOD=5.55;culprit=QD GT:AD:DP:GQ:PL 0/1:25,9:34:99:240,0,762 2 111851198 rs67248863 A T 89.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.91;ReadPosRankSum=0.000;SB=0.00;SOR=0.223;VQSLOD=8.59;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:99:118,0,225 2 111851212 rs13025330 C T 236.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.73;ReadPosRankSum=-0.243;SB=0.00;SOR=1.445;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:99:265,0,111 2 111871897 rs1439287 G A 296.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.780;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=1.259;SB=-8.097e+01;SOR=0.204;VQSLOD=9.84;culprit=SOR GT:AD:DP:GQ:PL 0/1:6,11:17:99:325,0,181 2 111886332 rs13429049 C T 647.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.975;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.652;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=0.120;SB=-3.940e+02;SOR=0.246;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:18,29:47:99:676,0,497 2 111887703 rs4849417 T A 294.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=-0.850;SB=-5.600e+01;SOR=0.804;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:14,11:25:99:323,0,416 2 111907691 rs724710 T C 569.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.301;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.65;ReadPosRankSum=-1.863;SB=-1.991e+02;SOR=0.141;VQSLOD=9.27;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,20:29:99:598,0,248 2 111909247 rs3789068 A G 997.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.985;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.710;HaplotypeScore=1.8533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=-0.561;SB=-3.000e+02;SOR=1.215;VQSLOD=7.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,36:65:99:1026,0,669 2 111921438 rs10547953 CT C 115.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.72;RPA=22,21;RU=T;ReadPosRankSum=-1.372;SB=-2.478e+01;SOR=1.179;STR;VQSLOD=8.89;culprit=QD GT:AD:DP:GQ:PL 0/1:3,12:15:35:153,0,35 2 112142170 rs148027270 G C 153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.951;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.74;MQ0=0;MQRankSum=-0.999;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=-0.409;SB=-1.070e+02;SOR=0.693;VQSLOD=2.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,8:16:99:182,0,184 2 112605465 rs4848800 T C 429.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-1.225e+02;SOR=2.303;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:33:458,33,0 2 112641256 rs2037198 G A 415.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-1.223e+02;SOR=1.765;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:33:444,33,0 2 112687157 . A ATATTTATTTATT 1818.73 PASS AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=63.51;MQ0=0;QD=26.75;RPA=4,7;RU=TATT;SB=-7.476e+01;SOR=4.294;STR;VQSLOD=2.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:27:51:1856,51,0 2 112704862 rs7601798 A C,G 522.77 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4258;MLEAC=1,1;MLEAF=0.500,0.500;MQ=55.44;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.76;SB=-2.411e+02;SOR=1.609;VQSLOD=3.54;culprit=FS GT:AD:DP:GQ:PL 1/2:0,8,14:22:89:551,368,350,128,0,89 2 112705157 rs3761701 T C 1409.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;SB=-2.770e+02;SOR=3.209;VQSLOD=7.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1438,114,0 2 112705185 rs3761700 G T 1021.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.96;SB=-7.897e+01;SOR=4.407;VQSLOD=5.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:81:1050,81,0 2 112725684 rs67884136 A ATGTGTG 5991.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.455;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.56;MQ0=0;MQRankSum=0.489;POSITIVE_TRAIN_SITE;QD=31.22;RPA=7,10;RU=TG;ReadPosRankSum=0.561;SB=-7.860e+02;SOR=2.362;STR;VQSLOD=1.89;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,77:82:99:5933,138,0 2 112732716 rs2138568 A G 419.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=-4.176e+01;SOR=3.611;VQSLOD=8.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:448,33,0 2 112740373 rs1996323 G A 762.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.16;SB=-7.997e+01;SOR=4.003;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:63:791,63,0 2 112740596 rs57740008 GA G 3382.73 PASS AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.67;SB=-1.619e+03;SOR=0.821;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:86:99:3420,244,0 2 112740598 rs57297275 T G 2610.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.84;SB=-1.569e+03;SOR=0.793;VQSLOD=3.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2639,193,0 2 112751928 rs7604639 G A 4080.77 PASS AC=2;AF=1.00;AN=2;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.74;SB=-2.374e+03;SOR=0.750;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,142:142:99:4109,304,0 2 112752142 rs7592909 A C 1245.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.60;SB=-1.613e+02;SOR=3.797;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:96:1274,96,0 2 112752880 rs6739294 G A 2298.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=-1.240e+03;SOR=0.869;VQSLOD=7.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2327,175,0 2 112753020 rs77702371 A G 3223.52 PASS AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.55;SB=-2.280e+03;SOR=0.818;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,117:117:99:3252,229,0 2 112753097 rs6726639 A C 2304.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.57;SB=-7.100e+02;SOR=2.271;VQSLOD=5.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2333,172,0 2 112753781 rs34346510 TA T 3403.73 PASS AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.93;RPA=3,2;RU=A;SB=-1.445e+03;SOR=1.065;STR;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:87:99:3441,259,0 2 112753883 rs10173553 C T 2183.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.91;SB=-1.342e+03;SOR=0.776;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2212,169,0 2 112754828 rs3811632 G T 1383.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.75;SB=-3.140e+02;SOR=2.726;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1412,105,0 2 112755001 rs2230515 A G 1719.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.71;SB=-7.140e+02;SOR=1.651;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1748,126,0 2 112758559 rs79058693 T A 952.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=0.00;SOR=6.666;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:81:981,81,0 2 112761310 rs4278932 G A 443.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.07;SB=0.00;SOR=5.136;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:472,36,0 2 112761653 rs4848933 C G 1566.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-1.603e+02;SOR=4.174;VQSLOD=5.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1595,117,0 2 112765973 rs1131244 A G 2453.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.06;SB=-1.143e+03;SOR=1.439;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2482,190,0 2 112766262 rs10210692 A G 997.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=-4.340e+02;SOR=1.329;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:75:1026,75,0 2 112766304 rs55766181 G C 1249.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;SB=-4.930e+02;SOR=1.670;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:39:93:1278,93,0 2 112766319 rs55799805 T C 1297.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.49;SB=-6.490e+02;SOR=1.230;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:96:1326,96,0 2 112767406 rs11884641 A G 849.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-1.891e+02;SOR=2.753;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:66:878,66,0 2 112767483 rs11884693 A G 1879.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=-7.000e+02;SOR=1.823;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1908,138,0 2 112767739 rs75313362 A G 3376.77 PASS AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-1.960e+03;SOR=0.830;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,107:107:99:3405,247,0 2 112767824 rs77781750 A G 2367.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-1.260e+03;SOR=0.941;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:80:99:2396,181,0 2 112767941 rs77306155 A G 1598.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-5.540e+02;SOR=1.755;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1627,120,0 2 112770770 rs4374383 A G 1578.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.79;SB=-8.540e+02;SOR=1.077;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1607,114,0 2 112770798 rs4500955 T C 1536.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5456;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.55;SB=-9.950e+02;SOR=0.770;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1565,114,0 2 112770799 rs57116599 G A 816.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=1.017;SB=-5.110e+02;SOR=0.667;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:21,31:52:99:845,0,489 2 112770821 rs10179948 T C 439.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.559;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.33;ReadPosRankSum=0.292;SB=-2.850e+02;SOR=0.838;VQSLOD=8.90;culprit=QD GT:AD:DP:GQ:PL 0/1:38,22:60:99:468,0,1001 2 112773500 rs6710733 A G 321.78 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.45;SB=-2.441e+02;SOR=0.818;VQSLOD=4.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:24:350,24,0 2 112773528 rs111619827 TCTTGTAC T 1228.73 PASS AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.89;SB=-6.091e+02;SOR=0.836;VQSLOD=4.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:1266,39,0 2 112776913 . T TC 408.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.303;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;MQRankSum=0.555;QD=29.20;RPA=8,9;RU=C;ReadPosRankSum=-1.364;SB=-3.876e+01;SOR=2.448;STR;VQSLOD=0.667;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,13:14:37:446,37,0 2 112776979 rs3811640 C A 1422.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5147;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.36;SB=-6.890e+02;SOR=1.480;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:53:99:1451,108,0 2 112779286 rs35446050 A ATC 1364.73 PASS AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.01;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.02;RPA=2,3;RU=TC;SB=-1.455e+02;SOR=3.841;STR;VQSLOD=3.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:32:87:1402,87,0 2 112785770 rs6738237 A G 802.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.45;SB=-1.225e+02;SOR=2.925;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:831,60,0 2 112786523 . A AT 1518.73 PASS AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;QD=33.75;RPA=3,4;RU=T;SB=-2.890e+02;SOR=2.935;STR;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:50:99:1556,135,0 2 112865517 rs7562848 G C 1442.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.86;SB=-7.950e+02;SOR=1.051;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1471,105,0 2 112945188 rs4848281 T A 1579.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-2.391e+02;SOR=3.171;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1608,126,0 2 113074775 . C CT 289.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.28;RPA=14,15;RU=T;ReadPosRankSum=1.234;SB=-1.146e+02;SOR=0.582;STR;VQSLOD=9.35;culprit=QD GT:AD:DP:GQ:PL 0/1:19,16:36:99:327,0,244 2 113089267 rs7601200 T C 1311.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.175;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.852;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=-0.801;SB=-7.920e+02;SOR=0.869;VQSLOD=7.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,52:83:99:1340,0,825 2 113090047 rs4578863 T C 404.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.679;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.691;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=1.454;SB=-1.390e+02;SOR=0.298;VQSLOD=9.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,17:38:99:433,0,649 2 113243321 rs3961919 G A 169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.757;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.978;SB=0.00;SOR=0.569;VQSLOD=10.11;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:198,0,169 2 113258671 . G A 387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.179;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.88;MQ0=0;MQRankSum=-3.351;QD=18.47;ReadPosRankSum=-0.363;SB=-4.276e+01;SOR=0.420;VQSLOD=1.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,13:21:99:416,0,201 2 113258916 . C T 494.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=47.65;MQ0=2;MQRankSum=-4.816;QD=12.69;ReadPosRankSum=0.305;SB=-9.600e+01;SOR=0.283;VQSLOD=0.824;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,22:39:99:523,0,492 2 113277707 rs34238996 CA C 201.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=1.316;QD=7.20;RPA=20,19;RU=A;ReadPosRankSum=0.707;SB=-2.407e+01;SOR=0.663;STR;VQSLOD=1.88;culprit=QD GT:AD:DP:GQ:PL 0/1:11,17:29:99:239,0,165 2 113277949 rs62157538 T C 2047.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;DB;DP=161;Dels=0.00;ExcessHet=3.0103;FS=0.579;HaplotypeScore=3.8267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.315;SB=-1.104e+03;SOR=0.770;VQSLOD=8.10;culprit=DP GT:AD:DP:GQ:PL 0/1:82,79:161:99:2076,0,2203 2 113278191 rs62157539 A T 478.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.570;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=9.660;HaplotypeScore=15.9935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.51;ReadPosRankSum=1.990;SB=-1.543e+02;SOR=0.035;VQSLOD=4.05;culprit=FS GT:AD:DP:GQ:PL 0/1:15,18:33:99:507,0,503 2 113278192 rs74355047 G GTA 682.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.962;DB;DP=33;ExcessHet=3.0103;FS=6.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.02;ReadPosRankSum=2.512;SB=-1.535e+02;SOR=0.047;VQSLOD=5.67;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:15,16:33:99:720,0,732 2 113278193 rs62157540 G A 418.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.156;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.163;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.51;ReadPosRankSum=2.769;SB=-8.097e+01;SOR=0.047;VQSLOD=5.38;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:15,16:31:99:447,0,511 2 113300330 rs4849071 G A 519.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.050;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.79;ReadPosRankSum=-0.087;SB=0.00;SOR=1.609;VQSLOD=9.34;culprit=FS GT:AD:DP:GQ:PL 0/1:8,17:25:99:548,0,256 2 113305150 rs11123139 G C 593.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=0.359;SB=-2.630e+02;SOR=0.709;VQSLOD=9.29;culprit=FS GT:AD:DP:GQ:PL 0/1:31,23:54:99:622,0,869 2 113308516 rs2304555 T A 1273.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=2.749;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-0.642;SB=-7.400e+02;SOR=0.439;VQSLOD=9.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,53:97:99:1302,0,1261 2 113308622 rs3816140 C T 446.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.714;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.55;ReadPosRankSum=-0.219;SB=0.00;SOR=0.765;VQSLOD=10.42;culprit=FS GT:AD:DP:GQ:PL 0/1:13,14:27:99:475,0,438 2 113309473 rs1545133 C T 1590.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=-0.411;SB=-9.820e+02;SOR=0.693;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:50,63:114:99:1619,0,1261 2 113310197 rs11351307 CT C 626.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.704;DB;DP=82;ExcessHet=3.0103;FS=3.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.74;RPA=12,11;RU=T;ReadPosRankSum=0.599;SB=-1.050e+02;SOR=1.196;STR;VQSLOD=6.30;culprit=QD GT:AD:DP:GQ:PL 0/1:45,36:82:99:664,0,988 2 113315735 rs57858974 CT C 243.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQ0=0;MQRankSum=1.387;POSITIVE_TRAIN_SITE;QD=12.19;RPA=5,4;RU=T;ReadPosRankSum=-2.473;SB=0.00;SOR=0.892;STR;VQSLOD=3.20;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,11:22:99:281,0,234 2 113321900 rs41280572 T C 1443.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=3.088;HaplotypeScore=2.8316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=1.373;SB=-6.770e+02;SOR=0.482;VQSLOD=7.23;culprit=DP GT:AD:DP:GQ:PL 0/1:91,58:149:99:1472,0,2613 2 113326281 rs6746874 C G 1014.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.590;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=0.206;SB=-2.470e+02;SOR=0.639;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:27,35:62:99:1043,0,711 2 113326502 rs13010814 C T 777.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.946;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=3.965;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=-1.254;SB=-1.450e+02;SOR=1.421;VQSLOD=6.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,31:75:99:806,0,1277 2 113343488 rs3789722 A T 574.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=4.8806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.42;ReadPosRankSum=-1.683;SB=-1.765e+00;SOR=2.004;VQSLOD=5.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,18:33:99:603,0,375 2 113344047 rs752992 T C 1333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.808;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=0.381;SB=-7.320e+02;SOR=0.669;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 0/1:81,55:137:99:1362,0,1884 2 113346413 rs3748024 C G 435.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.055;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=0.374;SB=-1.910e+02;SOR=0.706;VQSLOD=9.35;culprit=QD GT:AD:DP:GQ:PL 0/1:32,18:51:99:464,0,893 2 113346512 rs1047652 A C 548.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.713;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=3.703;HaplotypeScore=7.3003;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=-1.315;POSITIVE_TRAIN_SITE;QD=8.85;ReadPosRankSum=-1.155;SB=-2.510e+02;SOR=0.972;VQSLOD=0.274;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,22:62:99:577,0,1073 2 113404708 rs4849091 G A 1187.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.361;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=4.467;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=1.240;SB=-4.810e+02;SOR=0.305;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:48,51:99:99:1216,0,1428 2 113478889 rs2063918 A G 797.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=21.13;SB=0.00;SOR=6.091;VQSLOD=3.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:826,60,0 2 113478912 . C T 442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.068;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.81;ReadPosRankSum=-0.138;SB=-2.203e+01;SOR=0.846;VQSLOD=8.75;culprit=FS GT:AD:DP:GQ:PL 0/1:13,15:28:99:471,0,407 2 113479614 rs13386452 G A 1900.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=1.349;HaplotypeScore=2.6492;MLEAC=1;MLEAF=0.500;MQ=60.08;MQ0=0;MQRankSum=0.945;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-1.482;SB=-1.106e+03;SOR=0.752;VQSLOD=0.253;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,74:139:99:1929,0,1680 2 113479745 rs34781106 AC A 3051.73 PASS AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.78;RPA=6,5;RU=C;SB=-1.114e+03;SOR=1.329;STR;VQSLOD=4.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:91:99:3089,259,0 2 113480468 rs28517807 G T 200.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.762;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-0.281;SB=-6.400e+01;SOR=1.022;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:229,0,242 2 113480472 rs35340961 GA G 177.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.567;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.67;RPA=2,1;RU=A;ReadPosRankSum=0.138;SB=-6.700e+01;SOR=1.022;STR;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:215,0,279 2 113480556 rs34912983 GC G 886.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;DB;DP=68;ExcessHet=3.0103;FS=2.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.23;RPA=4,3;RU=C;ReadPosRankSum=0.723;SB=-1.600e+02;SOR=1.148;STR;VQSLOD=7.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,28:68:99:924,0,1358 2 113481547 rs2063919 A G 2003.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-7.870e+02;SOR=1.445;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:2032,150,0 2 113482779 rs4849116 A C 5210.77 PASS AC=2;AF=1.00;AN=2;DB;DP=169;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8273;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=-2.692e+03;SOR=1.126;VQSLOD=5.79;culprit=DP GT:AD:DP:GQ:PL 1/1:0,169:169:99:5239,376,0 2 113484319 rs2138604 G A 4922.77 PASS AC=2;AF=1.00;AN=2;DB;DP=160;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-2.410e+03;SOR=1.244;VQSLOD=6.36;culprit=DP GT:AD:DP:GQ:PL 1/1:0,160:160:99:4951,358,0 2 113484353 rs2138605 A G 3673.77 PASS AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=-1.277e+03;SOR=1.823;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,116:116:99:3702,274,0 2 113484441 rs2138606 T G 487.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.677;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.153;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=-0.474;SB=-9.732e-01;SOR=2.419;VQSLOD=6.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,15:31:99:516,0,468 2 113498566 rs3811040 A G 803.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.031;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.2183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=-0.728;SB=-4.380e+02;SOR=0.555;VQSLOD=10.19;culprit=FS GT:AD:DP:GQ:PL 0/1:21,32:53:99:832,0,476 2 113513504 rs4848298 A G 362.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.200;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.14;ReadPosRankSum=-1.026;SB=0.00;SOR=0.892;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:9,11:20:99:391,0,297 2 113513825 rs6731822 T C 2141.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=2.768;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-0.820;SB=-1.030e+03;SOR=0.820;VQSLOD=7.69;culprit=DP GT:AD:DP:GQ:PL 0/1:82,76:158:99:2170,0,2040 2 113514159 rs17042341 T A 1146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.904;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.750;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=0.880;SB=-6.980e+02;SOR=0.556;VQSLOD=9.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,48:100:99:1175,0,1503 2 113514180 rs17042342 T C 1390.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.615;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=6.303;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.927;SB=-7.820e+02;SOR=0.623;VQSLOD=4.97;culprit=FS GT:AD:DP:GQ:PL 0/1:51,50:101:99:1419,0,1360 2 113514763 rs17042344 T C 682.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.681;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.281;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=-0.448;SB=-2.110e+02;SOR=1.038;VQSLOD=7.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,24:62:99:711,0,1085 2 113532885 rs3783550 G T 1441.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.464;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.811;HaplotypeScore=2.5802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-0.659;SB=-5.120e+02;SOR=0.580;VQSLOD=9.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,57:108:99:1470,0,1395 2 113535395 rs2071376 G T 593.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.578;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-0.718;SB=-2.801e+01;SOR=1.179;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 0/1:21,20:41:99:622,0,692 2 113540084 rs2071373 G A 551.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=5.845;HaplotypeScore=3.6019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=1.910;SB=-3.670e+02;SOR=0.110;VQSLOD=8.95;culprit=FS GT:AD:DP:GQ:PL 0/1:13,24:37:99:580,0,359 2 113540205 rs1609682 G T 771.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.326;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=3.308;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=-2.180;SB=-4.020e+02;SOR=0.365;VQSLOD=9.39;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:45,30:75:99:800,0,1315 2 113588302 rs1143643 C T 199.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=-1.074;SB=0.00;SOR=1.445;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:99:228,0,105 2 113590467 rs1143633 C T 496.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.626;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=1.713;SB=-2.302e+01;SOR=1.532;VQSLOD=6.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,16:40:99:525,0,642 2 113671303 rs3811045 T C 1802.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-8.700e+02;SOR=1.421;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1831,132,0 2 113671378 rs3811046 G T 2340.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.147;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.54;ReadPosRankSum=0.856;SB=-1.421e+03;SOR=0.263;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:1,84:86:99:2369,178,0 2 113671410 rs3811047 A G 2223.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.4213;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;SB=-1.052e+03;SOR=1.209;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2252,166,0 2 113671518 rs3811048 G A 731.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=0.00;SOR=5.994;VQSLOD=7.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:760,57,0 2 113691060 rs12467810 T C 33.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.81;ReadPosRankSum=-0.447;SB=-2.901e+01;SOR=0.551;VQSLOD=9.10;culprit=QD GT:AD:DP:GQ:PL 0/1:9,3:12:62:62,0,230 2 113742734 rs7584409 G A 162.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.330;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.75;ReadPosRankSum=-0.560;SB=-2.701e+01;SOR=0.859;VQSLOD=9.41;culprit=QD GT:AD:DP:GQ:PL 0/1:14,7:21:99:191,0,402 2 113763463 rs2305152 A C 781.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=3.687;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=0.568;SB=-3.130e+02;SOR=0.348;VQSLOD=10.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,31:71:99:810,0,1206 2 113763575 rs895497 A G 1029.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.381;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.1235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=1.115;SB=-5.910e+02;SOR=0.640;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:62,43:107:99:1058,0,1574 2 113783570 rs13030063 C T 199.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.192;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.69;ReadPosRankSum=1.551;SB=0.00;SOR=0.275;VQSLOD=9.70;culprit=QD GT:AD:DP:GQ:PL 0/1:15,8:23:99:228,0,547 2 113783909 rs6744874 A T 1103.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.942;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.721;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=0.059;SB=-3.220e+02;SOR=0.349;VQSLOD=9.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,39:66:99:1132,0,803 2 113785020 rs12711747 A G 163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=0.352;SB=0.00;SOR=0.859;VQSLOD=10.45;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:192,0,162 2 113785202 rs11673918 G A 841.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.307;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=-0.470;SB=-5.470e+02;SOR=0.685;VQSLOD=8.58;culprit=FS GT:AD:DP:GQ:PL 0/1:51,36:88:99:870,0,1335 2 113785727 rs1562304 A G 985.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=-1.553e+02;SOR=3.407;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:75:1014,75,0 2 113786833 rs3948121 C G 57.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.44;ReadPosRankSum=-1.782;SB=-1.765e+00;SOR=0.495;VQSLOD=8.66;culprit=QD GT:AD:DP:GQ:PL 0/1:10,3:13:86:86,0,337 2 113789316 rs2305150 C T 476.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.565;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.418;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=-0.343;SB=-2.740e+02;SOR=1.043;VQSLOD=7.38;culprit=QD GT:AD:DP:GQ:PL 0/1:29,22:51:99:505,0,776 2 113816940 rs2278716 C G 396.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.45;ReadPosRankSum=0.080;SB=-1.260e+02;SOR=0.793;VQSLOD=8.38;culprit=FS GT:AD:DP:GQ:PL 0/1:28,14:42:99:425,0,779 2 113816942 rs2278717 A C 392.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.724;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=0.067;SB=-1.260e+02;SOR=0.793;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:28,14:42:99:421,0,786 2 113818632 rs2251872 G A 1158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=13.651;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-0.028;SB=-5.420e+02;SOR=0.101;VQSLOD=5.21;culprit=FS GT:AD:DP:GQ:PL 0/1:34,48:82:99:1187,0,1011 2 113818702 rs2515395 G C 406.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.983;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=0.668;SB=-3.400e+01;SOR=0.846;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:13,15:28:99:435,0,391 2 113818727 rs2251876 A G 317.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.555;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=1.157;SB=0.00;SOR=1.022;VQSLOD=9.29;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:19:99:346,0,251 2 113818738 rs1374285 G A 324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.397;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.30;ReadPosRankSum=1.086;SB=0.00;SOR=1.244;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:6,10:16:99:353,0,183 2 113819536 rs2472187 A G 180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.345;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=0.712;SB=0.00;SOR=1.085;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:209,0,126 2 113819614 rs2252007 T C 452.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.346;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.225;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-1.177;SB=-2.930e+02;SOR=0.233;VQSLOD=9.79;culprit=SOR GT:AD:DP:GQ:PL 0/1:16,19:35:99:481,0,419 2 113830201 rs3811051 T G 1016.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.942;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=2.218;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=-1.069;SB=-3.790e+02;SOR=0.402;VQSLOD=9.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,40:79:99:1045,0,1089 2 113830563 rs12469822 G A 683.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.718;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=3.043;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=0.100;SB=-1.190e+02;SOR=1.289;VQSLOD=7.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,25:49:99:712,0,629 2 113830582 rs4849150 A C 486.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.403;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=-1.465;SB=-1.020e+02;SOR=0.616;VQSLOD=9.34;culprit=FS GT:AD:DP:GQ:PL 0/1:14,18:32:99:515,0,376 2 113832312 rs6761276 T C 653.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.407;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=-0.484;SB=-3.250e+02;SOR=0.784;VQSLOD=8.65;culprit=QD GT:AD:DP:GQ:PL 0/1:46,29:75:99:682,0,1172 2 113832333 rs6743376 C A 553.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.982;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=-1.846;SB=-2.490e+02;SOR=0.638;VQSLOD=8.90;culprit=FS GT:AD:DP:GQ:PL 0/1:37,24:61:99:582,0,1026 2 113832981 rs13005572 C T 1151.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.873;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=1.746;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.572;SB=-5.820e+02;SOR=0.521;VQSLOD=9.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,44:91:99:1180,0,1282 2 113875509 rs2234677 G A 309.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.638;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-1.074;SB=-9.701e+01;SOR=0.420;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:9,15:24:99:338,0,274 2 113875565 rs2234678 A G 580.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.590;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.319;HaplotypeScore=1.6483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.659;SB=-2.410e+02;SOR=0.407;VQSLOD=9.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,23:45:99:609,0,617 2 113875584 rs2234679 G C 832.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.095;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.327;SB=-3.570e+02;SOR=0.474;VQSLOD=9.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,29:57:99:861,0,770 2 113875631 rs16065 T C 1153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.713;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=-1.188;SB=-7.500e+02;SOR=0.666;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 0/1:34,46:80:99:1182,0,760 2 113875753 rs4251969 C G 766.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.789;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.330;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.83;ReadPosRankSum=-0.246;SB=-2.430e+02;SOR=0.487;VQSLOD=8.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,25:43:99:795,0,482 2 113875773 rs4251970 A G 531.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.709;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.527;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=0.931;SB=-1.230e+02;SOR=1.051;VQSLOD=7.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,18:32:99:560,0,330 2 113877413 rs4251985 G T 132.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-1.333;SB=0.00;SOR=0.693;VQSLOD=10.17;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:161,0,177 2 113877495 rs928940 G T 875.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-3.200e+02;SOR=1.697;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:66:904,66,0 2 113877538 rs4251986 G C 524.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.725;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=-0.044;SB=-2.400e+02;SOR=0.608;VQSLOD=9.20;culprit=FS GT:AD:DP:GQ:PL 0/1:25,21:46:99:553,0,695 2 113877713 rs878972 A C 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.83;ReadPosRankSum=-1.056;SB=-2.004e+01;SOR=1.048;VQSLOD=8.28;culprit=QD GT:AD:DP:GQ:PL 0/1:23,7:30:99:203,0,650 2 113887207 rs419598 T C 1211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.132;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=1.707;HaplotypeScore=7.7013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=0.452;SB=-6.290e+02;SOR=0.960;VQSLOD=8.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,51:95:99:1240,0,1156 2 113887262 rs423904 C T 738.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.429;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.125;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-1.029;SB=-2.540e+02;SOR=1.045;VQSLOD=7.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,29:56:99:767,0,694 2 113887273 rs446433 G A 748.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-0.959;SB=-2.120e+02;SOR=0.871;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:28,28:56:99:777,0,740 2 113887294 rs495282 G C 566.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.329;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.370;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-0.982;SB=-1.270e+02;SOR=1.115;VQSLOD=7.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,20:45:99:595,0,684 2 113887335 rs2232354 T G 357.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.291;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=1.547;SB=-4.176e+01;SOR=0.368;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:8,12:20:99:386,0,256 2 113887338 rs495410 A C 236.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.038;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=-1.506;SB=-1.765e+00;SOR=1.179;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:12,8:20:99:265,0,387 2 113888465 rs448341 A G 256.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.884;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.340;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.11;ReadPosRankSum=0.299;SB=-1.670e+02;SOR=0.241;VQSLOD=8.70;culprit=QD GT:AD:DP:GQ:PL 0/1:29,13:42:99:285,0,775 2 113888470 rs434792 C G 261.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.430;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=3.206;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.95;ReadPosRankSum=0.734;SB=-1.670e+02;SOR=0.275;VQSLOD=8.58;culprit=QD GT:AD:DP:GQ:PL 0/1:31,13:44:99:290,0,863 2 113888557 rs451578 G A 861.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.732;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=3.076;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-1.168;SB=-3.110e+02;SOR=1.051;VQSLOD=7.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,33:83:99:890,0,1284 2 113888579 rs432014 T C 912.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.344;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=2.880;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=1.753;SB=-3.880e+02;SOR=1.218;VQSLOD=6.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,37:97:99:941,0,1567 2 113888793 rs454078 A T 983.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.715;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.809;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=1.525;SB=-5.910e+02;SOR=0.813;VQSLOD=7.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,45:87:99:1012,0,1107 2 113888900 rs380092 T A 1486.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.59;SB=-6.340e+02;SOR=1.747;VQSLOD=4.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1515,108,0 2 113940681 rs3748914 T C 1367.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.794;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=-0.214;SB=-6.800e+02;SOR=0.735;VQSLOD=7.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,48:89:99:1396,0,1153 2 113940839 rs4849167 G C 2262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;DB;DP=212;Dels=0.00;ExcessHet=3.0103;FS=1.074;HaplotypeScore=13.2890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-0.040;SB=-1.013e+03;SOR=0.596;VQSLOD=7.09;culprit=DP GT:AD:DP:GQ:PL 0/1:120,92:212:99:2291,0,2937 2 113942903 rs1975535 A C 753.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.761;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.902;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.56;ReadPosRankSum=0.818;SB=-2.150e+02;SOR=1.721;VQSLOD=5.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,23:32:99:782,0,194 2 113943063 rs45592842 T G 1624.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.202;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=9.763;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=1.611;SB=-7.580e+02;SOR=1.372;VQSLOD=4.25;culprit=FS GT:AD:DP:GQ:PL 0/1:62,64:126:99:1653,0,1625 2 113953401 rs923693 A G 1927.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-1.219e+03;SOR=0.790;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1956,141,0 2 113977454 rs2289897 G A 545.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-1.205e+02;SOR=2.712;VQSLOD=5.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:574,42,0 2 113996440 rs78983530 C T 864.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.92;SB=0.00;SOR=6.358;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:893,69,0 2 113996458 rs368218913 C CAT 1555.73 PASS AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.62;SB=0.00;SOR=6.666;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:81:1593,81,0 2 113996555 rs150615913 CAA C 4380.73 PASS AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.36;SB=-2.010e+03;SOR=0.914;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:4418,235,0 2 113996565 rs117024597 A G 2470.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4034;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-1.310e+03;SOR=0.846;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2499,181,0 2 113996772 rs143833481 G A 509.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=0.00;SOR=5.421;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:538,42,0 2 113999023 rs4322837 T C 4197.77 PASS AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-2.586e+03;SOR=0.883;VQSLOD=5.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,136:136:99:4226,301,0 2 113999775 rs116441771 G A 327.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SB=-7.897e+01;SOR=2.093;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,9:10:27:356,27,0 2 114000132 rs115905562 C T 3509.77 PASS AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.25;SB=-1.239e+03;SOR=1.903;VQSLOD=5.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,120:120:99:3538,265,0 2 114000458 rs902691 C A 1110.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-2.660e+02;SOR=2.649;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:84:1139,84,0 2 114001903 rs74370449 C T 453.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.09;SB=-4.176e+01;SOR=3.611;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:482,36,0 2 114017005 rs75788139 C T 1415.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.50;SB=-8.340e+02;SOR=0.963;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1444,108,0 2 114017029 rs6734610 A G 1546.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-9.080e+02;SOR=0.693;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1575,117,0 2 114020828 rs2305131 G T 1074.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.928;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.85;ReadPosRankSum=-1.541;SB=-3.080e+02;SOR=1.230;VQSLOD=7.76;culprit=FS GT:AD:DP:GQ:PL 1/1:1,35:36:81:1103,81,0 2 114196813 rs200274994 C T 81.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.691;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=46.58;MQ0=0;MQRankSum=-2.738;QD=4.54;ReadPosRankSum=1.031;SB=0.00;SOR=0.255;VQSLOD=1.60;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:110,0,399 2 114201171 rs141309871 C A 65.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.245;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.10;MQ0=1;MQRankSum=-3.469;POSITIVE_TRAIN_SITE;QD=3.29;ReadPosRankSum=0.527;SB=0.00;SOR=0.223;VQSLOD=2.69;culprit=QD GT:AD:DP:GQ:PL 0/1:13,7:20:94:94,0,450 2 114210817 rs199514655 GT G 654.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.99;MQ0=0;MQRankSum=-0.306;QD=11.49;RPA=11,10;RU=T;ReadPosRankSum=1.221;SB=-1.320e+02;SOR=0.892;STR;VQSLOD=1.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,33:70:99:692,0,442 2 114210921 rs1212279 C T 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.50;MQ0=0;MQRankSum=-0.473;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=-1.097;SB=0.00;SOR=1.270;VQSLOD=3.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,7:11:99:241,0,133 2 114213299 rs200577346 AT A 50.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.50;MQ0=0;MQRankSum=-0.693;QD=5.07;RPA=16,15;RU=T;ReadPosRankSum=-0.601;SB=0.00;SOR=0.693;STR;VQSLOD=0.987;culprit=QD GT:AD:DP:GQ:PL 0/1:5,5:11:84:88,0,84 2 114220055 rs1210133 T C 420.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.683;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8213;MLEAC=1;MLEAF=0.500;MQ=54.03;MQ0=1;MQRankSum=-0.161;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=-0.239;SB=-2.660e+02;SOR=0.535;VQSLOD=3.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,19:48:99:449,0,730 2 114426115 rs80314553 T C 4547.77 PASS AC=2;AF=1.00;AN=2;DB;DP=171;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5690;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=11;QD=26.75;SB=-2.075e+03;SOR=1.305;VQSLOD=3.37;culprit=DP GT:AD:DP:GQ:PL 1/1:0,170:171:99:4576,331,0 2 114429573 rs17017000 C T 2005.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=-1.076e+03;SOR=1.054;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2034,150,0 2 114513787 rs4538208 C G 658.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.45;SB=-3.910e+02;SOR=1.051;VQSLOD=5.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:51:687,51,0 2 114709476 rs13418557 A T 663.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.528;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.579;SB=-3.250e+02;SOR=0.357;VQSLOD=9.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,27:53:99:692,0,808 2 116066984 rs975453 G A 496.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.614;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=7.144;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=0.990;SB=-3.140e+02;SOR=0.148;VQSLOD=8.65;culprit=FS GT:AD:DP:GQ:PL 0/1:23,24:47:99:525,0,677 2 116099725 rs843403 A T 766.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.221;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.495;HaplotypeScore=2.6421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=-0.884;SB=-2.090e+02;SOR=1.279;VQSLOD=7.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,31:79:99:795,0,1252 2 116226309 rs843440 G A 305.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.80;SB=-2.031e+02;SOR=0.859;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:334,24,0 2 116497479 rs1550854 A G 3035.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-8.320e+02;SOR=2.254;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:3064,223,0 2 116497528 rs1550853 A G 1601.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.72;SB=-9.551e+01;SOR=4.271;VQSLOD=4.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1630,123,0 2 116510817 rs2053724 G C 1836.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.67;SB=-8.400e+02;SOR=1.382;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1865,135,0 2 116525960 rs1446495 G A 4189.77 PASS AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-2.397e+03;SOR=0.949;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,138:138:99:4218,310,0 2 116548526 rs6735355 A G 593.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=0.00;SOR=5.549;VQSLOD=8.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:622,45,0 2 116548820 rs3738879 C T 1184.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.55;SB=-7.160e+02;SOR=0.941;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:90:1213,90,0 2 116593691 . GTGAGAT G 1654.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.112;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.034;QD=15.32;ReadPosRankSum=1.003;SB=-5.400e+02;SOR=0.960;VQSLOD=2.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,44:60:99:1692,0,102 2 116598546 rs272011 G A 556.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.77;SB=0.00;SOR=5.549;VQSLOD=8.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:585,45,0 2 116599659 rs272010 A T 989.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.11;SB=-3.730e+02;SOR=1.819;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:75:1018,75,0 2 116599927 rs272009 T C 2523.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.35;SB=-1.214e+03;SOR=1.329;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2552,196,0 2 118572471 rs3755492 A C 1333.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=-5.240e+02;SOR=1.721;VQSLOD=7.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1362,99,0 2 118578691 rs3214497 TA T 501.73 PASS AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.02;MQ0=0;QD=25.09;RPA=9,8;RU=A;SB=-1.970e+02;SOR=1.402;STR;VQSLOD=2.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:21:60:539,60,0 2 118582936 rs148977188 A ATAAAG 5016.73 PASS AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=32.39;SB=-2.034e+03;SOR=1.127;VQSLOD=5.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:65:99:5054,193,0 2 118583940 rs2303348 C T 1488.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.09;SB=-5.940e+02;SOR=1.938;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1517,114,0 2 118688754 rs971754 T C 1648.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.95;SB=-7.430e+02;SOR=1.649;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1677,126,0 2 118694477 rs55918624 T C 176.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.42;ReadPosRankSum=-1.124;SB=-2.901e+01;SOR=1.136;VQSLOD=8.91;culprit=QD GT:AD:DP:GQ:PL 0/1:13,8:21:99:205,0,389 2 118701764 rs3732320 C T 428.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.153;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=-0.988;SB=-1.720e+02;SOR=0.754;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:14,18:32:99:457,0,355 2 118704478 rs7580124 T G 1318.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-3.210e+02;SOR=2.247;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1347,99,0 2 118704503 rs2303329 A G 946.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;SB=-1.653e+02;SOR=3.258;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:975,72,0 2 118705570 rs10186396 A G 1312.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.53;SB=-4.120e+02;SOR=2.356;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1341,105,0 2 118706879 rs1035598 A G 2491.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.64;SB=-1.500e+03;SOR=1.030;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2520,187,0 2 118731573 rs748767 G A 1538.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.539;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=2.578;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=-1.492;SB=-9.350e+02;SOR=0.475;VQSLOD=9.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,60:103:99:1567,0,1151 2 118732975 rs6722547 T C 1836.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.80;SB=-4.860e+02;SOR=2.564;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1865,138,0 2 118733051 rs74549216 G A 241.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.922;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=0.505;SB=0.00;SOR=0.368;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:14,9:23:99:270,0,495 2 118735395 rs889899 G A 705.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.41;SB=-2.191e+02;SOR=2.124;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:54:734,54,0 2 118753148 rs10649670 A ATC 1634.73 PASS AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.62;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.11;SB=-5.776e+01;SOR=5.486;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:35:93:1672,93,0 2 118753944 . G GTC 1356.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.678;DP=59;ExcessHet=3.0103;FS=5.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.00;ReadPosRankSum=2.078;SB=-6.290e+02;SOR=0.574;VQSLOD=3.76;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:33,26:59:99:1394,0,1642 2 118764242 . C CA 924.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;DP=47;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.68;RPA=1,2;RU=A;ReadPosRankSum=0.437;SB=-3.180e+02;SOR=0.892;STR;VQSLOD=4.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,25:47:99:962,0,810 2 118766024 rs10864966 A G 1697.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;SB=-1.115e+02;SOR=4.712;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1726,126,0 2 118771663 rs12477588 A G 1457.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6112;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-5.720e+02;SOR=1.714;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1486,108,0 2 118850469 rs61691937 G A 424.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.073;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5846;MLEAC=1;MLEAF=0.500;MQ=58.85;MQ0=0;MQRankSum=-0.250;QD=10.11;ReadPosRankSum=-1.246;SB=-1.920e+02;SOR=0.489;VQSLOD=2.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,18:42:99:453,0,643 2 118851167 rs368681269 T TGAG 260.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.499;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.77;MQ0=0;MQRankSum=0.807;QD=17.38;RPA=8,9;RU=GAG;ReadPosRankSum=-0.449;SB=-9.500e+01;SOR=0.551;STR;VQSLOD=1.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,7:16:99:298,0,250 2 118851227 rs202142266 AGAT A 609.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.70;MQ0=0;MQRankSum=0.305;POSITIVE_TRAIN_SITE;QD=23.45;RPA=4,3;RU=GAT;ReadPosRankSum=-0.208;SB=-2.480e+02;SOR=0.916;STR;VQSLOD=3.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,15:29:77:647,0,77 2 118851317 rs5833733 TGAA T 1097.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;DB;DP=41;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=57.57;MQ0=0;MQRankSum=-0.222;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.44;ReadPosRankSum=-1.029;SB=-5.070e+02;SOR=0.512;VQSLOD=0.180;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,21:41:99:1135,0,1071 2 118851439 rs200509699 T G 175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.243;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.6662;MLEAC=1;MLEAF=0.500;MQ=52.44;MQ0=1;MQRankSum=-3.723;QD=4.29;ReadPosRankSum=0.797;SB=-5.800e+01;SOR=0.782;VQSLOD=1.37;culprit=QD GT:AD:DP:GQ:PL 0/1:31,10:41:99:204,0,684 2 118851586 rs372485945 AGAT A 787.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.42;MQ0=0;MQRankSum=2.120;QD=34.25;RPA=13,12;RU=GAT;ReadPosRankSum=1.903;SB=-2.725e+02;SOR=0.439;STR;VQSLOD=1.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,18:36:81:825,0,81 2 118851680 rs4849678 T G 486.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.640;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3970;MLEAC=1;MLEAF=0.500;MQ=45.98;MQ0=0;MQRankSum=-0.340;QD=15.21;ReadPosRankSum=-0.292;SB=-2.120e+02;SOR=0.593;VQSLOD=2.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,20:32:99:515,0,271 2 118851809 . A AGATGAT,AGAT 916.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.444;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=54.14;MQ0=0;MQRankSum=2.110;QD=24.38;RPA=11,13,12;RU=GAT;ReadPosRankSum=0.543;SB=-3.810e+02;SOR=0.412;STR;VQSLOD=2.27;culprit=MQRankSum GT:AD:DP:GQ:PL 1/2:1,7,8:24:99:954,372,399,335,0,314 2 118851943 . A AGATGATGATGAT 1123.75 PASS AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.21;RPA=7,11;RU=GAT;SB=-5.763e+02;SOR=0.693;STR;VQSLOD=3.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,8:13:24:1161,24,0 2 118854094 . A AT 943.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;DP=109;ExcessHet=3.0103;FS=2.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.53;RPA=13,14;RU=T;ReadPosRankSum=1.668;SB=-3.190e+02;SOR=1.047;STR;VQSLOD=5.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,49:109:99:981,0,823 2 119604255 rs79126103 C T 370.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.550;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-0.436;SB=-2.080e+02;SOR=0.303;VQSLOD=9.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,15:30:99:399,0,452 2 119700090 rs17009280 A G 542.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=4.972;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=1.819;SB=-9.307e+01;SOR=0.136;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:21,18:39:99:571,0,642 2 119700096 rs2077344 T C 1344.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.39;SB=-1.115e+02;SOR=4.351;VQSLOD=5.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1373,105,0 2 119732042 rs11693199 T C 1130.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.250;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.855;HaplotypeScore=2.6527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-2.447;SB=-5.240e+02;SOR=0.518;VQSLOD=9.32;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:46,43:89:99:1159,0,1256 2 119734894 rs60485337 AAGAGAG A 2362.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;DB;DP=82;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.53;MQ0=0;MQRankSum=2.175;POSITIVE_TRAIN_SITE;QD=14.95;RPA=9,6;RU=AG;ReadPosRankSum=0.858;SB=-7.040e+02;SOR=0.560;STR;VQSLOD=0.296;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,34:82:99:2400,0,3152 2 119735251 rs2278590 C T 271.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.042;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.123;SB=-6.400e+01;SOR=1.022;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:12,11:23:99:300,0,319 2 119739063 rs6761637 T C 622.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.199;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=1.073;SB=-2.590e+02;SOR=0.772;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:20,24:44:99:651,0,609 2 119739182 rs10211503 T C 1082.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=3.159;HaplotypeScore=25.3639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=-1.161;SB=-5.570e+02;SOR=0.410;VQSLOD=9.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,42:74:99:1111,0,777 2 119739269 rs56216274 C T 588.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.361;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.92;ReadPosRankSum=1.953;SB=-1.650e+02;SOR=1.225;VQSLOD=6.13;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:42,24:66:99:617,0,1164 2 119748135 rs3835093 TC T 363.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;DB;DP=19;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.40;RPA=10,9;RU=C;ReadPosRankSum=0.170;SB=-1.830e+02;SOR=0.442;STR;VQSLOD=6.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,13:19:88:401,0,88 2 119748143 rs116412702 C G 364.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.392;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.46;ReadPosRankSum=-0.113;SB=-2.200e+02;SOR=0.442;VQSLOD=6.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,13:17:99:393,0,115 2 119749477 rs2304708 T G 1624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-8.210e+02;SOR=1.262;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1653,120,0 2 119749611 rs4848530 C T 204.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=4.393;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.62;ReadPosRankSum=-0.179;SB=-1.765e+00;SOR=2.833;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:98:233,0,98 2 119749858 rs3765035 A G 402.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.56;SB=0.00;SOR=5.136;VQSLOD=8.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:431,36,0 2 119751769 rs139356455 AAAC A 611.73 PASS AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.98;RPA=9,8;RU=AAC;SB=-5.076e+01;SOR=3.912;STR;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:649,42,0 2 119751867 rs11678719 C T 732.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.23;MQ0=0;MQRankSum=-1.001;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=-0.496;SB=-1.870e+02;SOR=0.596;VQSLOD=3.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,25:48:99:761,0,604 2 119915132 rs11308896 CG C 511.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;MQ0=0;MQRankSum=1.161;POSITIVE_TRAIN_SITE;QD=18.95;RPA=5,4;RU=G;ReadPosRankSum=0.578;SB=-3.976e+01;SOR=0.468;STR;VQSLOD=3.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,17:27:99:549,0,296 2 119988565 rs838100 G A 2807.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-12.815;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=3.524;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=-1.291;SB=-1.448e+03;SOR=0.746;VQSLOD=6.05;culprit=DP GT:AD:DP:GQ:PL 0/1:141,109:250:99:2836,0,4117 2 120003642 rs838083 C T 1310.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.396;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=4.282;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=-0.269;SB=-7.970e+02;SOR=0.361;VQSLOD=9.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,50:84:99:1339,0,1041 2 120012171 rs12711924 G A 836.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=5.436;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-1.459;SB=-3.490e+02;SOR=1.542;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 0/1:26,33:59:99:865,0,690 2 120014985 rs838072 A G 1298.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.23;SB=-3.777e+01;SOR=5.610;VQSLOD=3.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:96:1327,96,0 2 120015376 rs838071 C T 755.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.462;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=4.969;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-1.026;SB=-4.900e+01;SOR=1.545;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 0/1:31,26:57:99:784,0,877 2 120059895 rs67060344 G GGAAA 817.73 PASS AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.42;RPA=1,2;RU=GAAA;SB=0.00;SOR=5.283;STR;VQSLOD=8.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:855,39,0 2 120059921 rs8600 C A 889.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-7.697e+01;SOR=4.174;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:918,69,0 2 120059988 rs1890 T C 1608.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.52;SB=-6.220e+02;SOR=1.708;VQSLOD=7.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1637,120,0 2 120060082 rs1052500 T C 1644.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.03;SB=-6.870e+02;SOR=0.981;VQSLOD=7.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:55:99:1673,123,0 2 120078689 rs6719102 T C 1236.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-2.770e+02;SOR=2.833;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:96:1265,96,0 2 120078778 rs1132267 T C 1535.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.53;SB=-9.710e+02;SOR=0.853;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1564,111,0 2 120125029 rs2084202 A G 856.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.27;SB=-1.991e+02;SOR=2.584;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:66:885,66,0 2 120125936 rs2244135 T C 1616.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.40;SB=-9.130e+02;SOR=1.217;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1645,117,0 2 120125973 rs3091407 G C 1304.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.36;SB=-6.400e+02;SOR=1.464;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:96:1333,96,0 2 120128009 rs3835892 AT A 312.73 PASS AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.06;RPA=10,9;RU=T;SB=0.00;SOR=5.283;STR;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:350,39,0 2 120187344 rs11123523 A G 416.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.765;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.15;ReadPosRankSum=1.549;SB=-1.765e+00;SOR=2.985;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 0/1:6,12:18:99:445,0,109 2 120194651 rs33980232 A AGTGTGC 3330.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.892;DB;DP=82;ExcessHet=3.0103;FS=4.232;MLEAC=1;MLEAF=0.500;MQ=60.13;MQ0=0;MQRankSum=1.088;POSITIVE_TRAIN_SITE;QD=20.56;ReadPosRankSum=-0.241;SB=-1.630e+03;SOR=0.368;VQSLOD=0.602;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,38:82:99:3368,0,3812 2 120195182 rs2278565 C G 120.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.022;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.71;ReadPosRankSum=0.515;SB=-2.801e+01;SOR=0.512;VQSLOD=9.28;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:149,0,347 2 120197670 rs1042656 G A 596.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.384;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=-0.027;SB=-1.550e+02;SOR=1.101;VQSLOD=7.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,21:40:99:625,0,490 2 120199140 rs1126839 A G 918.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.070;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=2.174;SB=-5.400e+02;SOR=0.752;VQSLOD=8.19;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:43,40:84:99:947,0,906 2 120209689 rs2587692 A G 2079.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.111;DB;DP=228;Dels=0.00;ExcessHet=3.0103;FS=1.135;HaplotypeScore=3.8046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.12;ReadPosRankSum=0.160;SB=-7.220e+02;SOR=0.834;VQSLOD=5.08;culprit=DP GT:AD:DP:GQ:PL 0/1:145,83:228:99:2108,0,3787 2 120219287 . CA C 65.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQ0=0;MQRankSum=1.121;POSITIVE_TRAIN_SITE;QD=4.11;RPA=21,20;RU=A;ReadPosRankSum=-0.360;SB=-1.204e+01;SOR=0.275;STR;VQSLOD=3.21;culprit=QD GT:AD:DP:GQ:PL 0/1:7,9:17:99:103,0,117 2 120221585 rs2253870 G A 259.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.259;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-2.356;SB=-1.765e+00;SOR=1.781;VQSLOD=8.44;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,9:18:99:288,0,320 2 120221984 rs2579647 A C 256.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=2.776;SB=-9.400e+01;SOR=0.976;VQSLOD=8.69;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,11:20:99:285,0,250 2 120230901 rs2579640 C T 209.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.117;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-0.579;SB=0.00;SOR=0.446;VQSLOD=9.76;culprit=FS GT:AD:DP:GQ:PL 0/1:11,8:19:99:238,0,389 2 120230998 rs2579641 G A 1380.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.217;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=3.174;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=-1.082;SB=-3.100e+02;SOR=1.227;VQSLOD=7.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,50:99:99:1409,0,1227 2 120231165 rs2587701 T C 2466.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.999;DB;DP=181;Dels=0.00;ExcessHet=3.0103;FS=1.881;HaplotypeScore=13.6764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=1.147;SB=-1.287e+03;SOR=0.973;VQSLOD=7.02;culprit=DP GT:AD:DP:GQ:PL 0/1:87,93:181:99:2495,0,2183 2 120231303 rs2587702 T C 792.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.872;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=1.153;SB=-1.990e+02;SOR=0.801;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:36,30:67:99:821,0,1012 2 120303820 rs2579624 A T 233.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=4.228;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.25;ReadPosRankSum=-0.689;SB=-2.901e+01;SOR=3.056;VQSLOD=5.47;culprit=QD GT:AD:DP:GQ:PL 0/1:2,9:11:49:262,0,49 2 120344873 rs6726971 T A 457.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.661;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=5.246;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=0.381;SB=-8.000e+01;SOR=1.702;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 0/1:24,18:42:99:486,0,603 2 120362407 rs1568540 C T 2524.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.8686;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-1.516e+03;SOR=0.765;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:86:99:2553,196,0 2 120362897 rs1521914 T A 1026.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-1.135e+02;SOR=3.981;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:84:1055,84,0 2 120366057 rs368769180 G GT 533.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.056;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQ0=0;MQRankSum=0.560;POSITIVE_TRAIN_SITE;QD=19.77;RPA=12,13;RU=T;ReadPosRankSum=0.212;SB=-1.670e+02;SOR=1.127;STR;VQSLOD=4.08;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:3,24:28:2:473,2,0 2 120369105 rs17660087 A G 125.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.906;SB=0.00;SOR=0.693;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:154,0,169 2 120369300 rs10864986 T C 1605.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.76;SB=-1.018e+03;SOR=1.071;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1634,120,0 2 120383138 rs77292092 CATT C 945.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;DB;DP=30;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.52;ReadPosRankSum=0.586;SB=-2.370e+02;SOR=0.399;VQSLOD=4.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,17:30:99:983,0,734 2 120385094 rs200629080 GATATATAT GAT,G 2656.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.58;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;RPA=13,10,9;RU=AT;SB=-4.020e+02;SOR=2.964;STR;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/2:0,27,8:37:99:2694,267,162,1146,0,1097 2 120388412 rs2272058 G A 2825.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.26;SB=-1.730e+03;SOR=0.957;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:2854,211,0 2 120404629 . AT A 1158.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.400;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.69;RPA=14,13;RU=T;ReadPosRankSum=-0.076;SB=-5.060e+02;SOR=1.022;STR;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 1/1:2,54:66:99:1186,111,0 2 120409351 rs1521911 C T 169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=-0.709;SB=0.00;SOR=0.859;VQSLOD=10.17;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:198,0,169 2 120409430 rs1521912 A G 1452.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.02;SB=-2.341e+02;SOR=3.467;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1481,111,0 2 120409616 rs11686014 G T 1757.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.324;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-1.221;SB=-1.047e+03;SOR=0.637;VQSLOD=8.84;culprit=FS GT:AD:DP:GQ:PL 0/1:64,71:135:99:1786,0,1674 2 120438515 rs11684353 G C 1710.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.370;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=0.437;SB=-1.063e+03;SOR=0.700;VQSLOD=8.15;culprit=FS GT:AD:DP:GQ:PL 0/1:82,69:151:99:1739,0,2298 2 120438523 rs13011768 A G 2258.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.654;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=0.187;SB=-1.311e+03;SOR=0.699;VQSLOD=8.43;culprit=FS GT:AD:DP:GQ:PL 0/1:68,81:149:99:2287,0,1738 2 120438696 rs939777 A G 5508.77 PASS AC=2;AF=1.00;AN=2;DB;DP=172;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-3.405e+03;SOR=0.716;VQSLOD=6.96;culprit=DP GT:AD:DP:GQ:PL 1/1:0,172:172:99:5537,397,0 2 120439230 rs1983406 C G 1252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.494;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-1.018;SB=-7.190e+02;SOR=0.710;VQSLOD=8.61;culprit=FS GT:AD:DP:GQ:PL 0/1:58,46:104:99:1281,0,1482 2 120439459 rs4849797 C A 465.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.698;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.278;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-0.745;SB=-2.700e+02;SOR=0.409;VQSLOD=10.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,19:40:99:494,0,513 2 120443443 rs939778 A G 617.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.299;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=-1.543;SB=-2.450e+02;SOR=0.544;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:19,23:42:99:646,0,517 2 120643280 . G GT 68.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.04;RPA=6,7;RU=T;ReadPosRankSum=0.211;SB=-1.767e+00;SOR=0.693;STR;VQSLOD=9.05;culprit=QD GT:AD:DP:GQ:PL 0/1:12,5:17:99:106,0,304 2 120689905 rs2292361 A G 157.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.515;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.851;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.15;ReadPosRankSum=-0.466;SB=-3.100e+01;SOR=0.158;VQSLOD=7.94;culprit=QD GT:AD:DP:GQ:PL 0/1:30,8:38:99:186,0,917 2 120692399 . A G 969.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.213;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.793;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.80;ReadPosRankSum=1.392;SB=-5.130e+02;SOR=0.591;VQSLOD=7.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:57,42:99:99:998,0,1498 2 120704166 . G T 904.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.044;DP=75;Dels=0.00;ExcessHet=3.0103;FS=3.269;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.06;ReadPosRankSum=2.106;SB=-3.180e+02;SOR=1.204;VQSLOD=5.48;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:43,32:75:99:933,0,1058 2 120714401 . CT C 160.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.92;RPA=16,15;RU=T;ReadPosRankSum=0.623;SB=-6.700e+01;SOR=0.712;STR;VQSLOD=6.59;culprit=QD GT:AD:DP:GQ:PL 0/1:26,15:41:99:198,0,565 2 120718322 rs12618050 A G 377.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.526;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=5.959;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.17;ReadPosRankSum=-0.444;SB=-1.573e+02;SOR=0.058;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:8,14:22:99:406,0,236 2 120734737 . C CA 113.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;DP=19;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.32;RPA=10,11;RU=A;ReadPosRankSum=1.223;SB=-6.800e+01;SOR=0.269;STR;VQSLOD=7.28;culprit=QD GT:AD:DP:GQ:PL 0/1:11,7:19:99:151,0,223 2 120776972 rs3216703 TG T 289.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=-0.478;SB=0.00;SOR=0.330;VQSLOD=9.91;culprit=FS GT:AD:DP:GQ:PL 0/1:15,9:27:99:327,0,643 2 120776988 rs17669093 A G 199.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.759;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=-1.482;SB=0.00;SOR=0.321;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:12,7:19:99:228,0,372 2 120830815 rs3738970 A G 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.23;ReadPosRankSum=0.611;SB=-4.276e+01;SOR=0.818;VQSLOD=9.91;culprit=FS GT:AD:DP:GQ:PL 0/1:3,9:12:83:295,0,83 2 120885310 rs1034489 G A 1319.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.635;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=16.232;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=1.029;SB=-4.530e+02;SOR=1.674;VQSLOD=3.96;culprit=FS GT:AD:DP:GQ:PL 0/1:89,54:143:99:1348,0,2342 2 120900736 rs75582263 T C 1072.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.811;HaplotypeScore=9.2552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-0.165;SB=-5.580e+02;SOR=0.532;VQSLOD=9.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,42:95:99:1101,0,1345 2 120918585 rs12617570 A C 614.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.082;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.178;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=1.231;SB=-2.850e+02;SOR=0.490;VQSLOD=9.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,24:49:99:643,0,625 2 120932177 rs79646689 T G 215.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=-0.872;SB=0.00;SOR=1.609;VQSLOD=7.83;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:89:244,0,89 2 120980428 rs11550347 G C 1839.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.359;DB;DP=174;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=-0.301;SB=-8.790e+02;SOR=0.738;VQSLOD=7.17;culprit=DP GT:AD:DP:GQ:PL 0/1:102,72:174:99:1868,0,2829 2 120997869 rs6746072 A T 552.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.544;DB;DP=37;Dels=0.03;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9134;MLEAC=1;MLEAF=0.500;MQ=59.55;MQ0=0;MQRankSum=1.174;QD=15.35;ReadPosRankSum=0.781;SB=-9.900e+01;SOR=0.593;VQSLOD=1.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,20:36:99:581,0,432 2 121036385 rs12711939 T G 1169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.268;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=4.235;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=1.256;SB=-2.450e+02;SOR=1.207;VQSLOD=6.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:67,43:110:99:1198,0,1644 2 121036386 rs12711940 T A 1037.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.298;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=3.004;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=1.299;SB=-2.700e+02;SOR=1.101;VQSLOD=6.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,42:108:99:1066,0,1753 2 121038350 rs34186672 CAA C 302.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQ0=0;MQRankSum=1.230;POSITIVE_TRAIN_SITE;QD=16.82;RPA=4,2;RU=A;ReadPosRankSum=-1.067;SB=-7.700e+01;SOR=0.473;STR;VQSLOD=3.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,8:18:99:340,0,414 2 121043403 rs4091515 G A 292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.098;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=1.078;SB=-3.300e+01;SOR=0.610;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:12,11:23:99:321,0,310 2 121043429 rs74540542 C T 442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.579;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=1.556;SB=-3.100e+01;SOR=1.012;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:18,15:33:99:471,0,560 2 121050989 rs1065518 T A 201.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.685;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.41;ReadPosRankSum=0.762;SB=-8.700e+01;SOR=1.230;VQSLOD=6.47;culprit=QD GT:AD:DP:GQ:PL 0/1:14,10:24:99:230,0,367 2 121106850 rs4328642 C T 1097.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.300;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.30;ReadPosRankSum=-0.225;SB=-5.770e+02;SOR=0.659;VQSLOD=5.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,39:61:99:1126,0,554 2 121684663 rs6745937 C G 293.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.71;SB=-1.245e+02;SOR=1.802;VQSLOD=5.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:322,24,0 2 121709091 rs11681136 G A 394.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SB=0.00;SOR=5.283;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:423,36,0 2 121713022 rs6718382 C G 1123.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.05;SB=-2.101e+02;SOR=2.833;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:84:1152,84,0 2 121713030 rs12614482 G A 858.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.35;SB=-7.597e+01;SOR=4.174;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:887,69,0 2 121713041 rs12617878 T C 743.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.52;SB=-4.176e+01;SOR=4.615;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:57:772,57,0 2 121726447 rs2592595 G A 2423.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=-1.228e+03;SOR=1.347;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2452,178,0 2 121729323 rs2677507 A G 930.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.24;SB=-1.095e+02;SOR=3.767;VQSLOD=7.38;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,28:28:78:959,78,0 2 121729360 rs2592592 T C 1430.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.27;SB=-3.270e+02;SOR=2.584;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1459,108,0 2 121729490 rs2592591 C T 5002.77 PASS AC=2;AF=1.00;AN=2;DB;DP=174;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5802;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.92;SB=-2.445e+03;SOR=1.114;VQSLOD=5.67;culprit=DP GT:AD:DP:GQ:PL 1/1:0,173:174:99:5031,376,0 2 121729686 rs2592590 T C 2740.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.44;SB=-4.360e+02;SOR=3.471;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:78:99:2769,202,0 2 121730138 rs3106962 C G 3840.77 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.69;SB=-9.800e+02;SOR=2.564;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,114:114:99:3869,280,0 2 121730478 rs280201 G T 803.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.75;SB=0.00;SOR=6.184;VQSLOD=7.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:832,63,0 2 121740190 rs1968619 C T 1232.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.24;SB=-4.176e+01;SOR=5.784;VQSLOD=5.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:99:1261,99,0 2 121740194 rs1530580 T G 1368.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.41;SB=-7.797e+01;SOR=4.977;VQSLOD=1.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1397,105,0 2 121740505 rs280196 C T 2176.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.82;SB=-1.961e+02;SOR=4.548;VQSLOD=5.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2205,172,0 2 121981950 rs11890430 A G 1655.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.55;SB=-8.910e+02;SOR=1.278;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1684,126,0 2 121995151 rs2260394 T C 791.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.145;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.052;HaplotypeScore=5.1296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=-0.808;SB=-2.330e+02;SOR=0.968;VQSLOD=8.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,30:65:99:820,0,858 2 121996976 rs60243991 A C 388.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.741;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=7.104;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.67;ReadPosRankSum=-0.066;SB=-9.732e-01;SOR=2.985;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 0/1:10,12:22:99:417,0,292 2 122004596 rs2252862 C G 1516.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.97;SB=-3.840e+02;SOR=2.511;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1545,111,0 2 122005928 rs1530124 C T 1579.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.25;SB=-6.390e+02;SOR=1.835;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1608,120,0 2 122006851 rs17006283 A C 860.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.90;SB=-4.750e+02;SOR=1.284;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:66:889,66,0 2 122042750 rs13415738 A T 213.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.259;SB=-1.230e+02;SOR=0.693;VQSLOD=9.76;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:242,0,210 2 122042759 rs140736460 C T 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=0.235;SB=-8.800e+01;SOR=0.941;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:202,0,240 2 122273475 rs79295629 T C 317.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.188;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.875;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-1.177;SB=-5.900e+01;SOR=1.609;VQSLOD=5.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,11:25:99:346,0,325 2 122518836 rs370589113 T A 298.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.400;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.67;ReadPosRankSum=-0.109;SB=0.00;SOR=1.244;VQSLOD=8.47;culprit=FS GT:AD:DP:GQ:PL 0/1:6,10:16:99:327,0,174 2 125192068 rs1425745 T C 1284.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=1.609;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-0.090;SB=-8.170e+02;SOR=0.482;VQSLOD=9.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,53:102:99:1313,0,1323 2 125204192 rs61231472 A G 153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.935;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.69;ReadPosRankSum=-0.884;SB=-5.400e+01;SOR=0.743;VQSLOD=9.11;culprit=QD GT:AD:DP:GQ:PL 0/1:14,9:23:99:182,0,333 2 125204264 rs6715476 A G 667.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=-0.657;SB=-3.150e+02;SOR=0.882;VQSLOD=10.17;culprit=FS GT:AD:DP:GQ:PL 0/1:15,25:40:99:696,0,367 2 125204769 rs78640610 AT A 234.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;DB;DP=21;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=60.51;MQ0=0;MQRankSum=0.000;QD=13.81;RPA=11,10;RU=T;ReadPosRankSum=0.624;SB=-6.700e+01;SOR=2.147;STR;VQSLOD=4.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,13:21:68:272,0,68 2 125232609 rs4411700 G T 937.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.035;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=13.914;HaplotypeScore=4.2940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-1.489;SB=-2.090e+02;SOR=2.242;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 0/1:34,35:69:99:966,0,866 2 125671885 . T C 171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.157;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.27;ReadPosRankSum=0.501;SB=0.00;SOR=0.473;VQSLOD=8.37;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:200,0,257 2 127130299 rs112204418 C CCA 809.73 PASS AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.71;RPA=1,2;RU=CA;SB=-4.170e+02;SOR=0.693;STR;VQSLOD=5.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:17:48:847,48,0 2 127130431 rs6757298 A T 422.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;SB=-2.031e+02;SOR=1.329;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:33:451,33,0 2 127447763 rs6709803 G A 637.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.986;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.945;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=0.238;SB=-1.520e+02;SOR=1.260;VQSLOD=6.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,26:67:99:666,0,1118 2 127453479 rs4538146 G A 278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.737;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=-0.661;SB=-2.901e+01;SOR=0.562;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:20,11:31:99:307,0,671 2 127453664 rs1050967 A C 1196.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=1.529;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=1.627;SB=-7.020e+02;SOR=0.505;VQSLOD=8.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:65,48:113:99:1225,0,1603 2 127657221 rs3795873 C T 752.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.11;SB=-3.180e+02;SOR=1.609;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:781,60,0 2 127808116 rs12466912 C G 1627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.801;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.714;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-1.227;SB=-9.870e+02;SOR=0.566;VQSLOD=9.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,61:111:99:1656,0,1365 2 127808127 rs12466914 C G 1671.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.708;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=1.544;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=-2.296;SB=-1.140e+03;SOR=0.509;VQSLOD=8.62;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:47,64:111:99:1700,0,1301 2 127808226 rs2071270 A T 2358.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.839;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=4.901;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=34.69;ReadPosRankSum=0.663;SB=-7.890e+02;SOR=1.572;VQSLOD=4.47;culprit=FS GT:AD:DP:GQ:PL 1/1:1,67:68:99:2387,147,0 2 127808532 rs2043798 G A 421.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.405;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-0.075;SB=-9.800e+01;SOR=1.034;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:16,16:32:99:450,0,485 2 127808909 rs6745677 G A 1068.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-3.550e+02;SOR=2.049;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:81:1097,81,0 2 127811712 rs371888487 G GCA 874.73 PASS AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.71;RPA=1,2;RU=CA;SB=-1.110e+02;SOR=3.383;STR;VQSLOD=5.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:18:51:912,51,0 2 127816695 rs2228955 C T 655.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.302;HaplotypeScore=2.5655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=0.054;SB=-3.810e+02;SOR=0.807;VQSLOD=6.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,29:42:99:684,0,260 2 127816846 rs140171337 CTG C 250.75 PASS AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.34;RPA=11,10;RU=TG;SB=-6.397e+01;SOR=1.863;STR;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,8:11:24:288,24,0 2 127821085 rs2071268 C T 1763.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.07;SB=-4.590e+02;SOR=2.345;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1792,135,0 2 127821207 rs1137845 G A 1505.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-0.207;SB=-8.450e+02;SOR=0.735;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:64,61:125:99:1534,0,1561 2 127821452 rs2071267 C T 651.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.243;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=-1.209;SB=-3.250e+02;SOR=0.760;VQSLOD=8.88;culprit=FS GT:AD:DP:GQ:PL 0/1:34,26:60:99:680,0,913 2 127821499 rs72481904 T C 2101.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.30;SB=-1.248e+03;SOR=0.887;VQSLOD=3.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2130,157,0 2 127825706 . G A 1241.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.961;DP=104;Dels=0.00;ExcessHet=3.0103;FS=3.848;HaplotypeScore=5.2076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.94;ReadPosRankSum=0.730;SB=-7.130e+02;SOR=0.376;VQSLOD=7.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,55:104:99:1270,0,1246 2 127825968 rs934826 G A 129.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.7136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.27;ReadPosRankSum=-1.535;SB=-3.400e+01;SOR=0.446;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:16:99:158,0,277 2 127826533 rs1060743 A G 2897.77 PASS AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-1.581e+03;SOR=1.145;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,99:99:99:2926,220,0 2 127834136 rs2276575 T C 1234.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.894;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=5.364;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=1.230;SB=-3.790e+02;SOR=1.262;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 0/1:52,47:99:99:1263,0,1242 2 127834182 . C T 1598.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.602;DP=134;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.93;ReadPosRankSum=-0.283;SB=-9.990e+02;SOR=0.678;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 0/1:64,70:134:99:1627,0,1603 2 127834369 rs62157856 C T 588.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.956;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=7.911;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-0.122;SB=-4.500e+01;SOR=2.312;VQSLOD=5.65;culprit=FS GT:AD:DP:GQ:PL 0/1:29,20:49:99:617,0,747 2 127834384 rs13387613 T C 454.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.685;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-0.976;SB=-6.400e+01;SOR=1.005;VQSLOD=9.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,16:38:99:483,0,657 2 127834459 rs7562227 T C 378.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.44;SB=0.00;SOR=4.804;VQSLOD=5.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:407,30,0 2 127839434 rs4663093 C T 503.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.967;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.289;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.00;ReadPosRankSum=-0.708;SB=-3.360e+02;SOR=0.420;VQSLOD=9.57;culprit=QD GT:AD:DP:GQ:PL 0/1:33,23:56:99:532,0,919 2 127839474 rs11682128 G A 743.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=0.690;SB=-2.550e+02;SOR=0.741;VQSLOD=9.05;culprit=FS GT:AD:DP:GQ:PL 0/1:18,29:47:99:772,0,461 2 127839513 rs61525314 G A 535.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.389;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.763;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=0.422;SB=-1.000e+02;SOR=1.220;VQSLOD=6.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,19:32:99:564,0,343 2 127927814 rs113630934 C G 254.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.786;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.103;SB=-4.276e+01;SOR=0.275;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:283,0,231 2 127927936 rs905657 T A 551.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.969;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.24;ReadPosRankSum=0.233;SB=-2.880e+02;SOR=0.904;VQSLOD=6.59;culprit=QD GT:AD:DP:GQ:PL 0/1:42,25:67:99:580,0,938 2 127927943 rs6431230 G A 528.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.223;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.961;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.01;ReadPosRankSum=-0.397;SB=-3.410e+02;SOR=0.885;VQSLOD=6.49;culprit=QD GT:AD:DP:GQ:PL 0/1:41,25:66:99:557,0,952 2 127927990 rs6431231 G A 481.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.043;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.03;ReadPosRankSum=-0.867;SB=-2.380e+02;SOR=0.923;VQSLOD=6.98;culprit=QD GT:AD:DP:GQ:PL 0/1:38,22:60:99:510,0,944 2 127944781 rs34169835 A AC 2045.73 PASS AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.72;SB=-8.210e+02;SOR=1.179;VQSLOD=4.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:44:99:2083,129,0 2 127945023 rs75876537 C G 383.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.257;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=0.592;SB=-6.700e+01;SOR=0.914;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:14,12:26:99:412,0,376 2 127950904 rs885276 A T 509.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.389;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=0.398;SB=-6.100e+01;SOR=0.892;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:16,19:35:99:538,0,466 2 127951458 rs2089109 G A 759.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.346;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=-0.844;SB=-4.730e+02;SOR=0.593;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 0/1:48,35:83:99:788,0,1266 2 127951459 rs12476709 C T 724.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.73;ReadPosRankSum=-0.871;SB=-4.940e+02;SOR=0.611;VQSLOD=8.68;culprit=QD GT:AD:DP:GQ:PL 0/1:49,34:84:99:753,0,1260 2 127953054 rs7568070 A C 1562.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.072;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=2.046;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.980;SB=-3.360e+02;SOR=1.100;VQSLOD=7.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,57:104:99:1591,0,1325 2 128007686 rs6430936 A C 353.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.48;SB=-2.001e+02;SOR=1.022;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:382,27,0 2 128015367 rs4662718 C T 1124.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.12;SB=-4.190e+02;SOR=1.981;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:84:1153,84,0 2 128028792 rs4150499 T C 1927.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=-7.490e+02;SOR=1.765;VQSLOD=7.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1956,144,0 2 128029065 rs11345447 GA G 522.73 PASS AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.89;RPA=11,10;RU=A;SB=-8.151e+01;SOR=3.160;STR;VQSLOD=3.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:25:63:560,63,0 2 128030377 rs4150487 T C 1532.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;SB=-3.200e+02;SOR=2.935;VQSLOD=7.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1561,114,0 2 128046548 rs4150416 C A 427.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.53;SB=0.00;SOR=5.136;VQSLOD=7.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:456,36,0 2 128050000 rs4150404 A G 449.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SB=-3.677e+01;SOR=3.912;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:478,39,0 2 128050134 rs4150402 T C 2603.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.00;SB=-1.092e+03;SOR=1.666;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2632,193,0 2 128050483 rs2271026 T C 1542.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.14;SB=-3.510e+02;SOR=2.833;VQSLOD=7.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1571,117,0 2 128075624 . C CT 194.06 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.17;RPA=14,15;RU=T;ReadPosRankSum=2.260;SB=0.00;SOR=2.670;STR;VQSLOD=5.33;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:2,10:13:11:231,0,11 2 128083212 rs10439214 C T 693.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.89;SB=-4.176e+01;SOR=4.514;VQSLOD=7.90;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,19:19:54:722,54,0 2 128096695 rs140338489 T G 674.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.151;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=-0.405;SB=-2.091e+02;SOR=0.105;VQSLOD=8.72;culprit=FS GT:AD:DP:GQ:PL 0/1:9,24:33:99:703,0,222 2 128176040 rs1799810 A T 5188.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DB;DP=177;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.0951;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.32;ReadPosRankSum=-0.558;SB=-2.418e+03;SOR=1.141;VQSLOD=1.15;culprit=DP GT:AD:DP:GQ:PL 1/1:1,176:177:99:5217,394,0 2 128176195 rs2854700 G A 852.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.41;SB=-7.697e+01;SOR=4.091;VQSLOD=5.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:881,66,0 2 128181028 rs1878844 A G 1518.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.02;SB=-8.530e+02;SOR=0.780;VQSLOD=4.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1547,120,0 2 128247640 rs334156 T C 597.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=0.00;SOR=5.670;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:626,48,0 2 128249441 rs334152 C T 371.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.27;SB=0.00;SOR=4.804;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:400,30,0 2 128253773 . C T 546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.277;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.89;ReadPosRankSum=0.473;SB=-2.320e+02;SOR=0.693;VQSLOD=8.30;culprit=FS GT:AD:DP:GQ:PL 0/1:23,23:46:99:575,0,640 2 128253784 rs334150 T C 1129.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-3.630e+02;SOR=2.179;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:87:1158,87,0 2 128261245 rs145490186 AAAATAAAT A 808.74 PASS AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;RPA=9,7;RU=AAAT;SB=0.00;SOR=4.615;STR;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,9:15:27:846,27,0 2 128263410 . A AT 948.73 PASS AC=2;AF=1.00;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.75;RPA=7,8;RU=T;SB=-6.697e+01;SOR=4.743;STR;VQSLOD=3.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:39:99:986,99,0 2 128263476 rs334143 C T 462.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.05;SB=0.00;SOR=5.421;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:491,42,0 2 128264246 rs2078028 T C 2868.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.40;SB=-1.494e+03;SOR=0.979;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:2897,211,0 2 128264431 rs334162 C T 519.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.65;SB=0.00;SOR=5.549;VQSLOD=7.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:548,42,0 2 128272020 rs334139 C T 3467.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.34;SB=-9.070e+02;SOR=2.442;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3496,265,0 2 128283652 rs2249646 T C 944.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.15;SB=-4.376e+01;SOR=4.977;VQSLOD=4.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:72:973,72,0 2 128284073 rs17522960 A G 1852.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.31;SB=-6.140e+02;SOR=1.835;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1881,138,0 2 128331645 rs76746601 C A 1949.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;SB=-3.090e+02;SOR=3.258;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1978,150,0 2 128339758 rs17015424 C G 1476.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-2.920e+02;SOR=2.613;VQSLOD=7.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1505,114,0 2 128342547 rs4662741 G A 1629.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.34;SB=-4.140e+02;SOR=2.584;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1658,126,0 2 128346228 rs11673952 A C 1031.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.936;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.61;ReadPosRankSum=0.000;SB=0.00;SOR=5.283;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:1,27:28:81:1060,81,0 2 128350551 rs11678239 G A 3535.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.33;SB=-6.260e+02;SOR=3.067;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:3564,265,0 2 128350578 . T TG 2415.73 PASS AC=2;AF=1.00;AN=2;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;RPA=2,3;RU=G;SB=-2.591e+02;SOR=4.103;STR;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:66:99:2453,178,0 2 128351346 rs7558838 T C 877.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.35;SB=-1.613e+02;SOR=3.258;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:906,72,0 2 128363530 . G GC 1984.73 PASS AC=2;AF=1.00;AN=2;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.16;RPA=2,3;RU=C;SB=-3.440e+02;SOR=3.126;STR;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:52:99:2022,147,0 2 128369896 rs777435 A G 1497.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.287;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-0.126;SB=-7.540e+02;SOR=0.633;VQSLOD=8.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:72,57:129:99:1526,0,1900 2 128377833 rs2248519 C G 803.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.588;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.599;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=1.549;SB=-1.960e+02;SOR=1.238;VQSLOD=7.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,28:57:99:832,0,754 2 128378136 rs2245727 A C 166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-0.185;SB=0.00;SOR=0.399;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:9,6:15:99:195,0,293 2 128381808 rs13422424 C T 1086.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.663;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.376;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=-0.039;SB=-5.270e+02;SOR=0.336;VQSLOD=10.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,44:79:99:1115,0,1005 2 128382837 rs76175605 T C 139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=1.778;SB=0.00;SOR=0.693;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:168,0,167 2 128382859 rs2245297 C T 245.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.830;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=1.135;SB=0.00;SOR=0.693;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:274,0,259 2 128385224 rs10164978 C G 1905.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.667;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-0.132;SB=-8.190e+02;SOR=0.692;VQSLOD=8.26;culprit=FS GT:AD:DP:GQ:PL 0/1:83,67:150:99:1934,0,2339 2 128385244 rs58961411 T C 1563.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.134;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=2.247;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=-0.936;SB=-8.060e+02;SOR=0.522;VQSLOD=8.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:73,62:135:99:1592,0,2165 2 128389343 rs10208043 C T 421.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.802;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.408;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.79;ReadPosRankSum=-0.734;SB=-8.000e+01;SOR=1.091;VQSLOD=6.77;culprit=QD GT:AD:DP:GQ:PL 0/1:31,17:48:99:450,0,848 2 128389422 rs10183797 G C 67.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.392;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.24;ReadPosRankSum=0.912;SB=-9.732e-01;SOR=1.051;VQSLOD=8.04;culprit=QD GT:AD:DP:GQ:PL 0/1:12,4:16:96:96,0,394 2 128392547 rs4662750 A C 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=-0.277;SB=-1.765e+00;SOR=2.093;VQSLOD=6.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,7:13:99:247,0,186 2 128392647 rs60245561 G T 675.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.307;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=4.702;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=1.324;SB=-2.830e+02;SOR=0.249;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:26,29:55:99:704,0,766 2 128393261 rs2255178 T C 477.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.104;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-0.122;SB=-1.210e+02;SOR=0.693;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:22,18:40:99:506,0,668 2 128393289 rs2255177 T C 565.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.879;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.0132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=0.621;SB=-2.630e+02;SOR=0.848;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:31,23:54:99:594,0,767 2 128395138 rs75591580 G A 570.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.904;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.653;SB=0.00;SOR=0.428;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:25,18:43:99:599,0,852 2 128400608 rs4662751 C T 410.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-1.409;SB=-2.320e+02;SOR=0.610;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:24,16:40:99:439,0,699 2 128400783 rs2244612 G A 246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.511;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=-0.489;SB=-1.670e+02;SOR=0.693;VQSLOD=9.88;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:275,0,241 2 128400992 rs2244513 A G 1597.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.102;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.80;ReadPosRankSum=-1.012;SB=-4.830e+02;SOR=0.789;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:30,55:85:99:1626,0,789 2 128401091 rs2244507 A G 2141.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.761;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=0.079;SB=-1.346e+03;SOR=0.717;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:46,83:129:99:2170,0,1167 2 128407499 rs2243805 G A 305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.465;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=-0.947;SB=-1.720e+02;SOR=0.804;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:13,14:27:99:334,0,388 2 128408121 rs33922766 G GC 1217.73 PASS AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=-1.495e+02;SOR=3.611;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:78:1255,78,0 2 128409127 rs77699206 G A 3309.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.410;DB;DP=236;Dels=0.00;ExcessHet=3.0103;FS=0.497;HaplotypeScore=1.4972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=1.114;SB=-1.563e+03;SOR=0.638;VQSLOD=6.17;culprit=DP GT:AD:DP:GQ:PL 0/1:109,127:236:99:3338,0,3059 2 128409419 rs13021001 A G 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=1.025;SB=-1.765e+00;SOR=1.371;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:166,0,205 2 128411934 rs6707277 A G 1443.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.50;SB=-8.097e+01;SOR=5.136;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1472,111,0 2 128411950 rs6707282 A G 1639.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-3.710e+02;SOR=2.833;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1668,132,0 2 128431188 rs6430942 A G 253.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.282;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=0.378;SB=-2.701e+01;SOR=1.329;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:282,0,259 2 128431397 rs7591197 A G 825.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.277;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=5.266;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-0.484;SB=-3.020e+02;SOR=1.524;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 0/1:32,32:64:99:854,0,842 2 128431494 rs7591310 A G 262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.376;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.067;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-1.438;SB=-9.732e-01;SOR=1.981;VQSLOD=5.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,9:22:99:291,0,388 2 128459039 rs1048211 A G 116.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-0.816;SB=-5.150e-01;SOR=3.258;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:145,0,113 2 128459214 rs10206957 C G 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=11.181;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=1.465;SB=-5.600e+01;SOR=1.036;VQSLOD=4.38;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:203,0,129 2 128495645 rs6754215 G A 1388.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.208;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.187;SB=-5.830e+02;SOR=0.752;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 0/1:61,52:113:99:1417,0,1653 2 128520547 rs6731093 G A 352.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=2.282;SB=-4.076e+01;SOR=0.446;VQSLOD=9.22;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,12:19:99:381,0,211 2 128522203 rs117753184 A T 572.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.623;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.216;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=-1.383;SB=-2.640e+02;SOR=0.986;VQSLOD=7.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,21:41:99:601,0,576 2 128526579 . T TTAAA 1183.87 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.489;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.92;RPA=8,9;RU=TAAA;ReadPosRankSum=0.151;SB=-1.170e+02;SOR=2.584;STR;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:1,22:43:15:1221,15,0 2 128608271 rs34858843 GA G 91.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQ0=0;MQRankSum=0.431;POSITIVE_TRAIN_SITE;QD=10.19;RPA=12,11;RU=A;ReadPosRankSum=-0.751;SB=-6.200e+01;SOR=0.368;STR;VQSLOD=3.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,6:10:61:129,0,61 2 128608290 rs6713679 T C 148.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.90;MQ0=0;MQRankSum=0.549;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=0.000;SB=-3.100e+01;SOR=1.179;VQSLOD=3.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,7:12:99:177,0,103 2 128610719 rs35614229 T C 1537.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.971;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.946;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=0.734;SB=-7.880e+02;SOR=0.597;VQSLOD=7.81;culprit=QD GT:AD:DP:GQ:PL 0/1:24,49:73:99:1566,0,596 2 128615390 rs13031513 G T 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.101;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=1.835;SB=0.00;SOR=0.804;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:8,9:17:99:315,0,229 2 128699833 rs1370229 C T 874.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=-3.130e+02;SOR=1.519;VQSLOD=7.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:72:903,72,0 2 128708063 rs2461463 T C 1611.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-7.490e+02;SOR=1.314;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1640,126,0 2 128744580 rs2948068 A G 462.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.92;SB=-1.673e+02;SOR=2.049;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:36:491,36,0 2 128753854 rs1550174 T C 3116.77 PASS AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8136;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.51;SB=-7.240e+02;SOR=2.597;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:93:99:3145,232,0 2 128757658 rs2276681 G C 1082.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=2.742;HaplotypeScore=4.4100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-0.160;SB=-6.150e+02;SOR=0.592;VQSLOD=7.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,44:92:99:1111,0,1244 2 128757804 rs10928793 C T 2659.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=-1.222e+03;SOR=1.096;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2688,202,0 2 128849114 rs4476299 T C 1198.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.24;SB=-5.540e+02;SOR=1.501;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:87:1227,87,0 2 128860835 rs7355336 A G 1764.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.16;SB=-1.621e+02;SOR=4.047;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1793,132,0 2 128865835 rs66489005 T TAAGA 830.73 PASS AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.64;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.28;SB=0.00;SOR=5.283;VQSLOD=7.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:868,39,0 2 128865842 rs67915902 ATATC A 615.74 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.89;SB=0.00;SOR=4.804;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:653,30,0 2 128870808 rs4662775 T C 1084.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.81;SB=-5.940e+02;SOR=1.236;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:78:1113,78,0 2 128874061 rs10210598 G A 1153.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.93;SB=-1.493e+02;SOR=3.675;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:90:1182,90,0 2 128877837 rs4662593 G C 526.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.04;SB=-3.577e+01;SOR=4.047;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:555,42,0 2 128878014 rs4662594 G A 1881.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.09;SB=-1.201e+03;SOR=0.784;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:1910,138,0 2 128878667 rs6430990 T C 729.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.41;SB=0.00;SOR=5.994;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:758,57,0 2 128878979 rs34014763 C CTT 306.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.378;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.00;RPA=17,19;RU=T;ReadPosRankSum=-0.921;SB=0.00;SOR=4.294;STR;VQSLOD=4.37;culprit=FS GT:AD:DP:GQ:PL 1/1:1,16:27:11:343,11,0 2 128879022 rs6430991 G C 423.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.23;SB=0.00;SOR=5.136;VQSLOD=7.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:452,33,0 2 128880899 rs4480941 T A 1510.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-2.740e+02;SOR=3.258;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1539,117,0 2 128890878 . T TG 3954.73 PASS AC=2;AF=1.00;AN=2;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;RPA=1,2;RU=G;SB=-1.273e+03;SOR=1.691;STR;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:93:99:3992,265,0 2 129276720 rs841094 T C 574.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=-2.151e+02;SOR=1.493;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:603,45,0 2 129625669 . C T 944.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.741;DP=73;Dels=0.00;ExcessHet=3.0103;FS=4.667;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.94;ReadPosRankSum=0.006;SB=-4.500e+02;SOR=1.387;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 0/1:34,39:73:99:973,0,1050 2 130253977 rs34242261 T G 451.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.314;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.21;ReadPosRankSum=0.888;SB=-2.400e+02;SOR=0.854;VQSLOD=8.50;culprit=QD GT:AD:DP:GQ:PL 0/1:37,18:55:99:480,0,995 2 130254292 rs12475274 A G 464.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.05;SB=-1.851e+02;SOR=1.609;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:36:493,36,0 2 130681210 rs74331317 G C 927.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=-1.989;SB=-4.020e+02;SOR=0.720;VQSLOD=8.05;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:37,35:72:99:956,0,1036 2 130681407 rs7591781 G C 1456.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.68;SB=-2.341e+02;SOR=3.365;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1485,111,0 2 130681447 rs11897873 G A 579.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.42;SB=0.00;SOR=5.549;VQSLOD=7.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:608,45,0 2 130683344 rs10928942 G A 1624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.01;SB=-8.640e+02;SOR=1.199;VQSLOD=7.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1653,120,0 2 130737541 rs4347768 C T 477.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.735;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=3.275;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.86;ReadPosRankSum=2.703;SB=0.00;SOR=2.584;VQSLOD=0.371;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 1/1:3,13:16:39:506,39,0 2 130751121 rs4362508 A T 677.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.89;SB=-1.881e+02;SOR=1.721;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:706,54,0 2 130751141 rs4493197 C A 709.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.80;SB=-4.010e+02;SOR=0.784;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:57:738,57,0 2 130832531 rs2122977 A G 1067.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.23;MQ0=3;QD=24.27;SB=-5.780e+02;SOR=1.075;VQSLOD=2.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:81:1096,81,0 2 130895314 rs7556966 A G 340.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.21;SB=-2.061e+02;SOR=1.179;VQSLOD=5.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:27:369,27,0 2 130897055 rs28751929 G A 2354.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.19;SB=-7.730e+02;SOR=2.073;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2383,187,0 2 130897234 rs3177472 C T 1403.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.648;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=3.684;HaplotypeScore=3.8308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-0.797;SB=-6.670e+02;SOR=0.363;VQSLOD=8.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,52:114:99:1432,0,1702 2 130941065 rs6737226 T C 2099.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-9.440e+02;SOR=1.195;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2128,160,0 2 130941087 . A G 951.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.22;MQ0=0;MQRankSum=-0.567;QD=11.47;ReadPosRankSum=0.032;SB=-5.490e+02;SOR=0.786;VQSLOD=0.819;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,38:83:99:980,0,1092 2 130948314 rs142246044 G GT 406.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.43;RPA=12,13;RU=T;ReadPosRankSum=0.964;SB=-1.440e+02;SOR=0.859;STR;VQSLOD=7.98;culprit=FS GT:AD:DP:GQ:PL 0/1:17,22:44:99:444,0,315 2 130949411 rs10208844 G T 1499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.8501;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.60;SB=-5.050e+02;SOR=1.931;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1528,114,0 2 130951548 rs1052319 G A 4498.77 PASS AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5926;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=-1.284e+03;SOR=2.194;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,128:128:99:4527,337,0 2 130951566 rs7340193 G A 3566.77 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4923;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.30;SB=-1.009e+03;SOR=2.170;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:105:99:3595,280,0 2 130971115 rs7586630 T C 285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5929;MLEAC=1;MLEAF=0.500;MQ=56.54;MQ0=0;MQRankSum=-5.190;POSITIVE_TRAIN_SITE;QD=8.16;ReadPosRankSum=-0.036;SB=-9.732e-01;SOR=1.238;VQSLOD=1.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,11:35:99:314,0,766 2 130971177 . A AG 357.74 PASS AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=35.23;RPA=2,3;RU=G;SB=0.00;SOR=4.804;STR;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:11:30:395,30,0 2 131104049 rs11542414 C T 467.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.349;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.316;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-0.552;SB=-2.740e+02;SOR=0.473;VQSLOD=9.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,21:37:99:496,0,464 2 131127651 rs3739124 A G 1174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.644;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=1.622;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-0.629;SB=-5.660e+02;SOR=0.922;VQSLOD=7.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,47:105:99:1203,0,1532 2 131266530 rs10737928 C A 2158.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=2;POSITIVE_TRAIN_SITE;QD=28.78;SB=-1.325e+03;SOR=0.836;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2187,163,0 2 131390400 rs150691196 A G 165.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=55.29;MQ0=0;MQRankSum=-1.226;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=0.000;SB=0.00;SOR=0.569;VQSLOD=3.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,6:14:99:194,0,224 2 131414176 rs62165276 C T 294.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.864;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.41;MQ0=0;MQRankSum=-2.006;QD=9.21;ReadPosRankSum=0.461;SB=-9.900e+01;SOR=0.553;VQSLOD=1.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,13:32:99:323,0,553 2 131487673 rs272128 A C 5917.77 PASS AC=2;AF=1.00;AN=2;DB;DP=192;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-3.357e+03;SOR=0.896;VQSLOD=6.09;culprit=DP GT:AD:DP:GQ:PL 1/1:0,192:192:99:5946,433,0 2 131520663 rs1905235 T C 7054.77 PASS AC=2;AF=1.00;AN=2;DB;DP=222;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.78;SB=-4.296e+03;SOR=0.730;VQSLOD=4.70;culprit=DP GT:AD:DP:GQ:PL 1/1:0,222:222:99:7083,518,0 2 131672950 rs12464119 A G 1777.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.820;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=3.159;HaplotypeScore=4.1792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=-2.131;SB=-1.065e+03;SOR=0.443;VQSLOD=7.99;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:67,65:132:99:1806,0,1761 2 131673316 rs3739129 C T 2483.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.340;DB;DP=196;Dels=0.00;ExcessHet=3.0103;FS=1.120;HaplotypeScore=4.7213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.276;SB=-1.366e+03;SOR=0.880;VQSLOD=6.79;culprit=DP GT:AD:DP:GQ:PL 0/1:101,95:196:99:2512,0,2761 2 131673577 rs34513288 T C 1916.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.658;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=4.791;HaplotypeScore=6.1950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-0.096;SB=-8.620e+02;SOR=1.114;VQSLOD=6.47;culprit=DP GT:AD:DP:GQ:PL 0/1:90,69:159:99:1945,0,2245 2 131674285 rs3739127 A G 976.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.942;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-0.536;SB=-3.460e+02;SOR=0.832;VQSLOD=7.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,36:75:99:1005,0,1090 2 131703968 rs67022442 G C 444.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.191;HaplotypeScore=3.7069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.18;ReadPosRankSum=0.181;SB=-1.765e+00;SOR=2.584;VQSLOD=5.71;culprit=QD GT:AD:DP:GQ:PL 0/1:8,13:21:99:473,0,225 2 131769237 rs13023338 G A 1003.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.992;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=3.483;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-0.977;SB=-4.200e+02;SOR=0.348;VQSLOD=9.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,37:76:99:1032,0,1038 2 131935190 rs9679061 C T 335.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.98;SB=-1.105e+02;SOR=1.981;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:364,30,0 2 131985688 . A G 37.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.52;MQ0=0;MQRankSum=-1.173;QD=3.15;ReadPosRankSum=-0.086;SB=0.00;SOR=0.148;VQSLOD=1.96;culprit=QD GT:AD:DP:GQ:PL 0/1:9,3:12:66:66,0,288 2 132059813 rs4850099 G A 387.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.85;SB=-2.391e+02;SOR=1.112;VQSLOD=5.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:30:416,30,0 2 132110123 rs34283659 G A 353.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-1.951e+02;SOR=0.859;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:382,30,0 2 132110463 rs12477219 G C 943.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.71;SB=-4.530e+02;SOR=1.179;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:75:972,75,0 2 132111121 rs11895354 G A 284.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.89;SB=-1.523e+02;SOR=0.859;VQSLOD=4.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:313,24,0 2 132111123 rs370814343 T C 336.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=30.62;SB=-1.921e+02;SOR=0.859;VQSLOD=5.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:365,27,0 2 132111127 rs13410274 G T 330.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.07;SB=-1.941e+02;SOR=0.859;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:359,27,0 2 132120501 . C CT 1471.73 PASS AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=30.04;RPA=7,8;RU=T;SB=-9.451e+01;SOR=4.935;STR;VQSLOD=2.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1509,147,0 2 132121350 rs371054387 G C 449.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=34.60;SB=-1.135e+02;SOR=2.147;VQSLOD=4.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:478,36,0 2 132181483 . G T 777.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.596;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=-0.504;SB=-4.150e+02;SOR=0.682;VQSLOD=10.13;culprit=FS GT:AD:DP:GQ:PL 0/1:21,31:52:99:806,0,491 2 132181872 rs3729567 C T 341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.603;HaplotypeScore=1.8874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=-0.536;SB=-1.620e+02;SOR=1.075;VQSLOD=7.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,14:23:99:370,0,199 2 132182138 rs3730150 G T 131.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.78;ReadPosRankSum=0.057;SB=-3.100e+01;SOR=0.330;VQSLOD=9.27;culprit=QD GT:AD:DP:GQ:PL 0/1:9,6:15:99:160,0,284 2 132182159 rs3730148 T C 124.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.187;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.31;MQ0=0;MQRankSum=-1.076;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=7.34;ReadPosRankSum=-0.244;SB=-7.000e+01;SOR=0.160;VQSLOD=0.371;culprit=QD GT:AD:DP:GQ:PL 0/1:10,7:17:99:153,0,291 2 132200529 rs71345555 A G 1134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.348;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=53.39;MQ0=1;MQRankSum=-2.822;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=0.736;SB=-4.690e+02;SOR=0.602;VQSLOD=2.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,44:95:99:1163,0,1396 2 132201468 rs4522649 G A 2703.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.446;DB;DP=208;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-1.476;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=-1.085;SB=-1.602e+03;SOR=0.657;VQSLOD=0.181;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:105,103:208:99:2732,0,2638 2 132201582 rs1806886 A G 2323.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=11.574;DB;DP=195;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=0.468;SB=-1.292e+03;SOR=0.682;VQSLOD=6.66;culprit=DP GT:AD:DP:GQ:PL 0/1:112,83:195:99:2352,0,2782 2 132201663 rs1317139 T C 2029.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.025;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=1.204;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=0.125;SB=-1.166e+03;SOR=0.670;VQSLOD=7.67;culprit=DP GT:AD:DP:GQ:PL 0/1:94,76:170:99:2058,0,2729 2 132202050 rs13413908 T C 892.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.613;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=6.752;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=0.772;SB=-1.210e+02;SOR=1.874;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 0/1:31,30:61:99:921,0,853 2 132202449 rs35221568 T C 95.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.346;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.84;ReadPosRankSum=1.114;SB=-2.701e+01;SOR=1.112;VQSLOD=8.56;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:14:99:124,0,220 2 132202453 rs76757413 G C 101.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.27;ReadPosRankSum=1.114;SB=-2.901e+01;SOR=1.112;VQSLOD=7.51;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:14:99:130,0,263 2 132229720 rs3101998 T C 613.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.415;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.62;MQ0=0;MQRankSum=-5.693;QD=12.03;ReadPosRankSum=-0.956;SB=-1.730e+02;SOR=0.657;VQSLOD=0.448;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,23:51:99:642,0,820 2 132240509 rs3817560 C A 171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.145;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.59;ReadPosRankSum=1.784;SB=0.00;SOR=0.283;VQSLOD=8.97;culprit=QD GT:AD:DP:GQ:PL 0/1:13,7:20:99:200,0,442 2 132241502 . TA T 305.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;DP=40;ExcessHet=3.0103;FS=8.272;MLEAC=1;MLEAF=0.500;MQ=59.88;MQ0=0;MQRankSum=0.000;QD=8.05;RPA=16,15;RU=A;ReadPosRankSum=0.356;SB=-8.800e+01;SOR=2.022;STR;VQSLOD=4.37;culprit=QD GT:AD:DP:GQ:PL 0/1:15,23:40:99:343,0,266 2 132248379 rs12469517 T G 580.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.022;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.343;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=0.179;SB=-3.440e+02;SOR=0.363;VQSLOD=9.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,23:59:99:609,0,987 2 132248584 rs10182785 T C 2118.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.60;SB=-1.256e+03;SOR=0.723;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2147,157,0 2 132248876 rs6709245 A G 471.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.686;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.48;MQ0=0;MQRankSum=-2.104;POSITIVE_TRAIN_SITE;QD=19.66;ReadPosRankSum=-0.644;SB=-4.276e+01;SOR=0.582;VQSLOD=3.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,16:24:99:500,0,248 2 132249372 rs6706952 C T 621.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=13;POSITIVE_TRAIN_SITE;QD=18.29;SB=-2.710e+02;SOR=1.508;VQSLOD=3.23;culprit=FS GT:AD:DP:GQ:PL 1/1:6,28:34:48:650,48,0 2 132250578 rs2272359 G C 380.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-0.033;SB=-1.800e+02;SOR=0.871;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:19,16:35:99:409,0,506 2 132250656 rs2272360 C G 318.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.093;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=-0.766;SB=-1.210e+02;SOR=1.609;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 0/1:19,14:33:99:347,0,499 2 132254985 rs12469530 A T 501.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.943;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.30;ReadPosRankSum=0.089;SB=-1.590e+02;SOR=0.560;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:12,17:29:99:530,0,292 2 132256410 rs3817567 G A 237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.373;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.20;ReadPosRankSum=1.417;SB=-6.000e+01;SOR=0.804;VQSLOD=8.87;culprit=QD GT:AD:DP:GQ:PL 0/1:18,11:29:99:266,0,509 2 132256414 rs3817568 C T 263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.792;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.51;ReadPosRankSum=1.177;SB=-9.000e+01;SOR=0.693;VQSLOD=9.12;culprit=QD GT:AD:DP:GQ:PL 0/1:19,12:31:99:292,0,536 2 132256420 rs3817569 C T 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=0.700;SB=-9.600e+01;SOR=1.085;VQSLOD=8.34;culprit=FS GT:AD:DP:GQ:PL 0/1:20,14:34:99:375,0,542 2 132256505 rs3817572 A C 392.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.750;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=-1.156;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=2.011;SB=-1.950e+02;SOR=0.901;VQSLOD=3.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,15:37:99:421,0,568 2 132256559 rs3817574 T C 322.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.169;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQ0=0;MQRankSum=-0.968;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=-1.641;SB=-1.330e+02;SOR=0.616;VQSLOD=3.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,15:31:99:351,0,511 2 132257689 rs60175199 A G 285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.808;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=-0.096;SB=-9.732e-01;SOR=1.562;VQSLOD=6.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,10:28:99:314,0,560 2 132258593 rs13415770 A G 386.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.777;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.77;MQ0=0;MQRankSum=-0.446;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=-0.806;SB=-3.200e+01;SOR=0.976;VQSLOD=2.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,12:27:99:415,0,481 2 132258815 rs12691986 G A 1296.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.099;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.778;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=54.80;MQ0=0;MQRankSum=0.085;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.799;SB=-7.760e+02;SOR=0.593;VQSLOD=0.084;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,49:92:99:1325,0,1201 2 132263793 rs10190283 C G 104.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.73;ReadPosRankSum=-0.084;SB=-3.200e+01;SOR=0.551;VQSLOD=9.57;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:99:133,0,224 2 132265862 rs12477023 T C 372.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.002;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=-0.558;SB=0.00;SOR=0.460;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:16,12:28:99:401,0,496 2 132266301 rs13011045 C T 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=-1.408;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.705;SB=-4.076e+01;SOR=0.293;VQSLOD=2.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,7:12:99:207,0,167 2 132266303 rs13011046 C A 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.223;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQ0=0;MQRankSum=-1.545;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=1.116;SB=-3.976e+01;SOR=0.223;VQSLOD=3.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,7:13:99:207,0,206 2 132266315 rs13020752 A T 164.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.076;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=-1.691;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=1.254;SB=0.00;SOR=0.693;VQSLOD=3.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,6:12:99:193,0,201 2 132269230 rs4145988 G C 122.78 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.6747;MLEAC=1;MLEAF=0.500;MQ=54.53;MQ0=0;MQRankSum=-1.383;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=1.368;SB=-7.300e+01;SOR=0.527;VQSLOD=2.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,6:10:24:151,0,24 2 132269231 rs4145987 G A 58.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.0104;MLEAC=1;MLEAF=0.500;MQ=54.53;MQ0=0;MQRankSum=-1.085;POSITIVE_TRAIN_SITE;QD=6.53;ReadPosRankSum=1.068;SB=-1.807e+01;SOR=0.368;VQSLOD=3.23;culprit=QD GT:AD:DP:GQ:PL 0/1:4,5:10:87:87,0,107 2 132272326 rs12477742 A G 736.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=54.46;MQ0=0;MQRankSum=-3.482;POSITIVE_TRAIN_SITE;QD=17.97;ReadPosRankSum=1.346;SB=-4.400e+02;SOR=0.837;VQSLOD=2.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,28:41:99:765,0,253 2 132273621 rs1815205 G A 108.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=0.298;SB=-3.200e+01;SOR=1.508;VQSLOD=8.55;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:137,0,103 2 132273796 . G GCA 1003.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;DP=65;ExcessHet=3.0103;FS=14.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.44;ReadPosRankSum=0.360;SB=-3.750e+02;SOR=0.080;VQSLOD=3.65;culprit=FS GT:AD:DP:GQ:PL 0/1:38,27:65:99:1041,0,1881 2 132273798 . C T 630.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;DP=61;Dels=0.00;ExcessHet=3.0103;FS=9.568;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.34;ReadPosRankSum=2.103;SB=-2.600e+02;SOR=0.111;VQSLOD=3.95;culprit=FS GT:AD:DP:GQ:PL 0/1:39,22:61:99:659,0,1240 2 132273801 . C T 627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.622;DP=62;Dels=0.00;ExcessHet=3.0103;FS=8.841;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.13;ReadPosRankSum=2.230;SB=-2.690e+02;SOR=0.143;VQSLOD=4.40;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:40,22:62:99:656,0,1229 2 132273802 . C CATTAG 1677.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.271;DP=62;ExcessHet=3.0103;FS=9.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.24;ReadPosRankSum=1.678;SB=-6.250e+02;SOR=0.143;VQSLOD=4.58;culprit=FS GT:AD:DP:GQ:PL 0/1:40,22:62:99:1715,0,3288 2 132274077 rs4309618 A G 920.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.576;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=3.632;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=40.55;MQ0=4;MQRankSum=-0.693;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.166;SB=-4.100e+01;SOR=1.928;VQSLOD=0.578;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,31:74:99:949,0,1025 2 132274113 rs4493309 A G 370.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.181;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.83;MQ0=2;MQRankSum=-0.358;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-0.120;SB=-1.766e+00;SOR=1.230;VQSLOD=3.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,13:33:99:399,0,559 2 132274474 rs13010688 G A 602.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.389;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-0.846;SB=-3.320e+02;SOR=0.542;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:17,25:42:99:631,0,471 2 132275343 rs12691998 G T 1826.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.789;DB;DP=196;Dels=0.00;ExcessHet=3.0103;FS=5.139;HaplotypeScore=2.8134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.32;ReadPosRankSum=0.171;SB=-1.181e+03;SOR=0.421;VQSLOD=4.33;culprit=DP GT:AD:DP:GQ:PL 0/1:113,83:196:99:1855,0,2877 2 132275396 rs2277878 T C 1904.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765;DB;DP=192;Dels=0.00;ExcessHet=3.0103;FS=7.368;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=-0.797;SB=-9.270e+02;SOR=1.183;VQSLOD=4.12;culprit=DP GT:AD:DP:GQ:PL 0/1:110,82:192:99:1933,0,2758 2 132275579 rs12691999 G A 53.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.366;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.84;ReadPosRankSum=-0.078;SB=-1.765e+00;SOR=0.425;VQSLOD=8.97;culprit=QD GT:AD:DP:GQ:PL 0/1:11,3:14:82:82,0,364 2 132276254 rs28621583 A G 364.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.141;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.48;MQ0=3;MQRankSum=-3.706;POSITIVE_TRAIN_SITE;QD=8.29;ReadPosRankSum=1.070;SB=-1.150e+02;SOR=0.788;VQSLOD=2.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,19:44:99:393,0,711 2 132276530 rs12052334 C T 79.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.267;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=5.798;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.20;ReadPosRankSum=1.992;SB=-4.176e+01;SOR=0.027;VQSLOD=7.35;culprit=QD GT:AD:DP:GQ:PL 0/1:14,5:19:99:108,0,503 2 132277465 rs9287519 G A 290.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-1.371;SB=-1.700e+02;SOR=0.693;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:16,12:28:99:319,0,424 2 132286155 rs10174409 G C 577.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.28;MQ0=0;MQRankSum=-4.038;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=-1.122;SB=-1.930e+02;SOR=0.612;VQSLOD=2.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,23:40:99:606,0,444 2 132288583 . T C 40.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.1362;MLEAC=1;MLEAF=0.500;MQ=45.05;MQ0=0;MQRankSum=-1.434;QD=3.71;ReadPosRankSum=1.004;SB=0.00;SOR=1.270;VQSLOD=1.21;culprit=QD GT:AD:DP:GQ:PL 0/1:4,7:13:69:69,0,79 2 132292791 . T C 487.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.721;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.08;MQ0=0;MQRankSum=-1.699;QD=18.07;ReadPosRankSum=0.058;SB=-2.420e+02;SOR=0.818;VQSLOD=2.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,21:27:99:516,0,177 2 132349222 rs6711357 A C 825.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-2.550e+02;SOR=2.066;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:63:854,63,0 2 132349224 rs6751575 G C 878.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-2.810e+02;SOR=1.863;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:66:907,66,0 2 132349413 rs6751827 G A 1107.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-5.580e+02;SOR=1.061;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:37:87:1136,87,0 2 132354365 rs2136463 G C 2003.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=-9.530e+02;SOR=1.437;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2032,147,0 2 132354479 rs6704592 C A 3177.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6214;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-1.828e+03;SOR=0.900;VQSLOD=7.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3206,247,0 2 132354586 rs6710546 A G 3768.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7876;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=6;MQRankSum=-1.394;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.99;ReadPosRankSum=1.523;SB=-2.109e+03;SOR=0.272;VQSLOD=0.226;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:3,127:130:99:3797,245,0 2 132354807 rs6705059 C T 1606.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.51;SB=-4.040e+02;SOR=2.746;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1635,126,0 2 132354853 rs6705083 C G 910.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.81;SB=-7.197e+01;SOR=4.174;VQSLOD=3.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:939,69,0 2 132357667 rs4107587 A G 431.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.21;SB=-5.997e+01;SOR=2.833;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:460,33,0 2 132359034 rs6430896 A G 863.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-4.450e+02;SOR=1.179;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:63:892,63,0 2 132359063 rs60230063 A G 827.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.59;SB=-6.050e+02;SOR=0.693;VQSLOD=4.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:60:856,60,0 2 132359089 rs60809087 C A 684.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;SB=-4.750e+02;SOR=0.693;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:51:713,51,0 2 132359185 rs62176601 T C 187.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=-0.524;POSITIVE_TRAIN_SITE;QD=18.78;ReadPosRankSum=-1.940;SB=0.00;SOR=1.085;VQSLOD=3.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,6:10:99:216,0,111 2 132366923 rs1979998 G T 407.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.283;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.17;MQ0=0;MQRankSum=-1.337;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=0.060;SB=-9.800e+01;SOR=0.910;VQSLOD=3.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,15:24:99:436,0,237 2 132366994 rs1979997 A G 969.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.94;SB=-6.120e+02;SOR=0.693;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:72:998,72,0 2 132367062 . G GT 386.74 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQ0=0;MQRankSum=-0.597;QD=17.58;RPA=11,12;RU=T;ReadPosRankSum=-1.577;SB=-7.814e+01;SOR=1.609;STR;VQSLOD=1.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,18:27:30:424,0,30 2 132369178 rs6752868 T C 2049.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=-1.254e+03;SOR=0.722;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2078,154,0 2 132369332 rs6743830 C T 691.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-8.197e+01;SOR=3.816;VQSLOD=7.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:57:720,57,0 2 132384137 rs9287537 A C 604.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.553;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=2.090;SB=-3.460e+02;SOR=0.711;VQSLOD=8.96;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:27,21:48:99:633,0,737 2 132384339 . C T 525.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.211;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-1.598;SB=-2.620e+02;SOR=0.488;VQSLOD=4.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,19:45:99:554,0,644 2 132384381 rs12991373 G A 616.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.129;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-0.447;SB=-2.600e+02;SOR=0.955;VQSLOD=7.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,21:48:99:645,0,690 2 132384588 rs13011674 C G 962.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.562;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=4.972;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=-0.148;SB=-3.890e+02;SOR=1.178;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 0/1:30,34:64:99:991,0,797 2 132384682 rs12692060 T C 1230.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-5.690e+02;SOR=1.445;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:96:1259,96,0 2 132384683 rs12692061 T G 1206.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=-5.150e+02;SOR=1.329;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:90:1235,90,0 2 132491544 rs7599401 C G 811.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;SB=-4.870e+02;SOR=0.997;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:60:840,60,0 2 132494171 rs4850247 G A 616.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.82;SB=-3.870e+02;SOR=0.776;VQSLOD=4.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:48:645,48,0 2 132494272 rs4850248 A G 467.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-1.653e+02;SOR=1.911;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:496,36,0 2 132517068 rs4850122 A G 196.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.277;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.49;MQ0=0;MQRankSum=-1.036;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=1.093;SB=-1.390e+02;SOR=0.653;VQSLOD=3.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,9:16:99:225,0,143 2 132517294 rs10184807 A G 561.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=2;POSITIVE_TRAIN_SITE;QD=25.53;SB=-2.670e+02;SOR=0.693;VQSLOD=4.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:45:590,45,0 2 132558335 rs12992187 G T 314.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.801;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=-1.120;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=0.089;SB=-3.100e+01;SOR=0.818;VQSLOD=3.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,12:29:99:343,0,530 2 132586670 rs2314388 T C 165.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.422;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.218;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=0.101;SB=-2.501e+01;SOR=1.508;VQSLOD=6.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,6:17:99:194,0,311 2 132586674 rs9282966 C G 529.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.11;SB=-1.821e+02;SOR=1.609;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:558,42,0 2 132586836 . A AG 139.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=-0.748;QD=12.70;RPA=2,3;RU=G;ReadPosRankSum=0.000;SB=-7.300e+01;SOR=0.495;STR;VQSLOD=2.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,5:11:99:177,0,225 2 132586854 rs4558626 C T 115.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQ0=0;MQRankSum=-0.674;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=-0.700;SB=-6.900e+01;SOR=0.693;VQSLOD=3.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,5:10:99:144,0,105 2 132591808 rs55998054 T G 1290.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=4.026;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.58;MQ0=0;MQRankSum=-0.149;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=-0.962;SB=-8.770e+02;SOR=0.389;VQSLOD=0.080;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,55:93:99:1319,0,1007 2 132592178 rs9751367 T C 2513.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-1.555e+03;SOR=0.796;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2542,181,0 2 132592403 rs9711401 T C 1106.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.91;SB=-4.650e+02;SOR=1.609;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:87:1135,87,0 2 132592459 rs56168567 G A 372.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.97;MQ0=0;MQRankSum=-0.951;POSITIVE_TRAIN_SITE;QD=19.62;ReadPosRankSum=0.278;SB=-1.031e+02;SOR=0.892;VQSLOD=3.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,14:19:99:401,0,118 2 132592477 rs55947559 AGGTGCTGTGT A 898.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.16;MQ0=0;MQRankSum=-0.674;QD=26.96;ReadPosRankSum=0.000;SB=-1.398e+02;SOR=0.569;VQSLOD=1.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,7:13:99:936,0,382 2 132593178 . C T 267.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.09;ReadPosRankSum=-0.579;SB=-8.500e+01;SOR=1.179;VQSLOD=8.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,11:19:99:296,0,174 2 132593402 rs61555136 C T 345.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-0.556;SB=-2.210e+02;SOR=0.593;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 0/1:17,14:31:99:374,0,417 2 132593445 rs13417272 G A 292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.644;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-0.899;SB=-1.700e+02;SOR=0.976;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:11,13:24:99:321,0,356 2 132593519 rs9751462 A G 661.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.83;SB=-3.230e+02;SOR=1.022;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:51:690,51,0 2 132593636 rs59199382 C T 643.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=-3.660e+02;SOR=0.693;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:23:51:672,51,0 2 132905626 rs200465566 A G 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=41.94;MQ0=0;MQRankSum=-2.261;QD=8.98;ReadPosRankSum=1.038;SB=-1.766e+00;SOR=1.230;VQSLOD=1.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,6:15:99:163,0,283 2 132905664 rs201427646 G T 328.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.835;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=44.79;MQ0=0;MQRankSum=-2.800;QD=8.89;ReadPosRankSum=-1.037;SB=-1.210e+02;SOR=0.996;VQSLOD=1.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,17:37:99:357,0,533 2 132905682 rs199535616 T C 327.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.028;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=45.90;MQ0=0;MQRankSum=-3.422;QD=7.45;ReadPosRankSum=-0.167;SB=-1.650e+02;SOR=0.573;VQSLOD=1.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,18:44:99:356,0,677 2 132905693 rs150889759 T C 341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.418;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=46.30;MQ0=0;MQRankSum=-4.102;QD=6.84;ReadPosRankSum=-0.305;SB=-2.490e+02;SOR=0.676;VQSLOD=0.340;culprit=QD GT:AD:DP:GQ:PL 0/1:29,21:50:99:370,0,713 2 132905758 rs62165773 C T 528.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.970;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=49.74;MQ0=0;MQRankSum=1.121;POSITIVE_TRAIN_SITE;QD=8.01;ReadPosRankSum=-0.429;SB=-3.390e+02;SOR=0.693;VQSLOD=2.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,22:66:99:557,0,862 2 133011947 rs62164985 C G 215.84 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=21.58;SB=-1.573e+02;SOR=1.085;VQSLOD=4.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:18:244,18,0 2 133014476 rs62165008 A G 41.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.43;MQ0=0;MQRankSum=0.660;QD=3.80;ReadPosRankSum=-0.099;SB=-1.765e+00;SOR=0.693;VQSLOD=1.72;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:70:70,0,280 2 133014510 rs9287404 T C 241.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.773;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9953;MLEAC=1;MLEAF=0.500;MQ=57.36;MQ0=0;MQRankSum=-2.337;QD=12.09;ReadPosRankSum=-0.875;SB=-6.200e+01;SOR=0.495;VQSLOD=2.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,9:20:99:270,0,320 2 133014602 rs75245503 G C 718.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.163;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.2613;MLEAC=1;MLEAF=0.500;MQ=59.68;MQ0=0;MQRankSum=-0.881;QD=12.61;ReadPosRankSum=-1.491;SB=-3.370e+02;SOR=0.665;VQSLOD=2.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,31:57:99:747,0,790 2 133014612 rs74853538 A C 727.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.715;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.9282;MLEAC=1;MLEAF=0.500;MQ=59.69;MQ0=0;MQRankSum=-0.966;QD=12.55;ReadPosRankSum=-0.599;SB=-3.700e+02;SOR=0.836;VQSLOD=2.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,29:58:99:756,0,723 2 133014640 rs78867621 C T 139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.226;SB=-7.600e+01;SOR=0.946;VQSLOD=5.75;culprit=QD GT:AD:DP:GQ:PL 0/1:53,10:63:99:168,0,1310 2 133014651 rs147164632 A AC 1114.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;DB;DP=63;ExcessHet=3.0103;FS=0.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.98;RPA=2,3;RU=C;ReadPosRankSum=-0.085;SB=-5.720e+02;SOR=0.576;STR;VQSLOD=7.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,32:63:99:1152,0,1074 2 133014657 rs113237573 G A 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=1.262;HaplotypeScore=20.9199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.56;ReadPosRankSum=1.424;SB=-9.800e+01;SOR=0.931;VQSLOD=2.25;culprit=QD GT:AD:DP:GQ:PL 0/1:56,12:68:99:202,0,1388 2 133014678 rs72869462 A G 773.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.776;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.55;ReadPosRankSum=0.339;SB=-4.870e+02;SOR=0.641;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 0/1:34,33:67:99:802,0,771 2 133014701 rs144811970 G A 214.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.217;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=1.248;HaplotypeScore=12.6612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-1.557;SB=-1.280e+02;SOR=0.439;VQSLOD=6.13;culprit=QD GT:AD:DP:GQ:PL 0/1:52,12:64:99:243,0,1320 2 133014703 rs72869464 T C 790.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.073;HaplotypeScore=13.6599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.36;ReadPosRankSum=-0.343;SB=-5.180e+02;SOR=0.460;VQSLOD=8.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,34:64:99:819,0,679 2 133014721 rs72869465 T C 809.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.779;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.053;HaplotypeScore=5.4112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.21;ReadPosRankSum=-0.748;SB=-4.470e+02;SOR=0.442;VQSLOD=8.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,32:57:99:838,0,611 2 133014751 rs75204936 T C 234.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.766;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=9.353;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.18;ReadPosRankSum=-0.050;SB=-1.180e+02;SOR=0.089;VQSLOD=4.10;culprit=QD GT:AD:DP:GQ:PL 0/1:28,10:38:99:263,0,863 2 133014776 rs72869466 C T 268.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.617;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.491;HaplotypeScore=7.9963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.90;ReadPosRankSum=-1.153;SB=-1.690e+02;SOR=0.358;VQSLOD=7.73;culprit=QD GT:AD:DP:GQ:PL 0/1:21,13:34:99:297,0,659 2 133014777 . A G 263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.491;HaplotypeScore=7.9963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.76;ReadPosRankSum=-1.029;SB=-1.660e+02;SOR=0.358;VQSLOD=7.73;culprit=QD GT:AD:DP:GQ:PL 0/1:21,13:34:99:292,0,650 2 133014786 rs72869468 G A 141.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.053;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.927;SB=-8.800e+01;SOR=0.404;VQSLOD=7.75;culprit=QD GT:AD:DP:GQ:PL 0/1:23,8:31:99:170,0,667 2 133014805 . C T 132.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.68;MQ0=0;MQRankSum=-1.278;QD=5.77;ReadPosRankSum=-1.260;SB=-5.000e+01;SOR=0.512;VQSLOD=2.02;culprit=QD GT:AD:DP:GQ:PL 0/1:15,8:23:99:161,0,389 2 133014822 rs75678647 C T 121.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.9976;MLEAC=1;MLEAF=0.500;MQ=58.62;MQ0=0;MQRankSum=-1.366;QD=5.53;ReadPosRankSum=-1.058;SB=-2.004e+01;SOR=0.784;VQSLOD=1.99;culprit=QD GT:AD:DP:GQ:PL 0/1:15,7:22:99:150,0,385 2 133014827 rs138609152 C CA 248.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.56;MQ0=0;MQRankSum=0.000;QD=12.44;RPA=2,3;RU=A;ReadPosRankSum=0.951;SB=-9.800e+01;SOR=0.473;STR;VQSLOD=8.51;culprit=FS GT:AD:DP:GQ:PL 0/1:11,9:20:99:286,0,397 2 133014832 rs76727711 C T 87.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.9959;MLEAC=1;MLEAF=0.500;MQ=58.56;MQ0=0;MQRankSum=0.671;QD=4.18;ReadPosRankSum=-0.455;SB=-2.302e+01;SOR=1.262;VQSLOD=1.59;culprit=QD GT:AD:DP:GQ:PL 0/1:16,5:21:99:116,0,401 2 133014841 rs76832220 G A 171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9977;MLEAC=1;MLEAF=0.500;MQ=58.31;MQ0=0;MQRankSum=1.006;QD=9.54;ReadPosRankSum=0.979;SB=-6.500e+01;SOR=1.329;VQSLOD=1.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,8:18:99:200,0,244 2 133014856 rs79113146 G T 147.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.542;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9991;MLEAC=1;MLEAF=0.500;MQ=56.13;MQ0=0;MQRankSum=1.036;QD=9.24;ReadPosRankSum=0.412;SB=-7.201e+01;SOR=0.446;VQSLOD=2.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,7:16:99:176,0,210 2 133015204 rs6755836 A C 626.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=29.85;SB=-2.021e+02;SOR=2.200;VQSLOD=5.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:48:655,48,0 2 133015212 rs62165013 A G 599.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=28.56;SB=-2.021e+02;SOR=2.200;VQSLOD=5.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:48:628,48,0 2 133015235 . C CT 779.73 PASS AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=33.90;RPA=3,4;RU=T;SB=-2.111e+02;SOR=2.030;STR;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:24:69:817,69,0 2 133015260 . T TCC 992.73 PASS AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=29.27;RPA=4,6;RU=C;SB=-3.710e+02;SOR=1.329;STR;VQSLOD=5.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:24:66:1030,66,0 2 133015267 rs76483000 A C 707.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=30.77;SB=-3.590e+02;SOR=1.179;VQSLOD=5.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:54:736,54,0 2 133015274 . T C 721.77 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=30.07;SB=-3.950e+02;SOR=1.051;VQSLOD=5.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:54:750,54,0 2 133015278 . C T 717.77 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=28.71;SB=-4.270e+02;SOR=0.941;VQSLOD=4.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:54:746,54,0 2 133015283 . G C 703.78 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.874;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.544;QD=25.13;ReadPosRankSum=1.742;SB=-5.211e+02;SOR=0.252;VQSLOD=1.46;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,27:28:27:732,27,0 2 133016335 rs2315221 T C 587.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=2;QD=26.72;SB=-1.641e+02;SOR=2.093;VQSLOD=4.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:48:616,48,0 2 133016344 rs113885144 T C 636.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=2;QD=26.53;SB=-2.201e+02;SOR=1.931;VQSLOD=3.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:51:665,51,0 2 133016365 rs112484182 A G 681.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=2;QD=26.22;SB=-3.000e+02;SOR=1.519;VQSLOD=3.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:54:710,54,0 2 133016368 rs112857050 T C 688.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=2;QD=26.49;SB=-2.730e+02;SOR=1.519;VQSLOD=4.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:54:717,54,0 2 133016378 . A C 661.77 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=27.57;SB=-3.080e+02;SOR=1.270;VQSLOD=4.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:51:690,51,0 2 133016379 . C A 653.77 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=27.24;SB=-2.490e+02;SOR=1.270;VQSLOD=4.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:51:682,51,0 2 133016383 rs112080228 A G 665.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=26.63;SB=-3.350e+02;SOR=1.136;VQSLOD=4.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:51:694,51,0 2 133016387 rs112327829 G C 670.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=26.83;SB=-3.190e+02;SOR=1.136;VQSLOD=3.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:51:699,51,0 2 133016402 rs79422997 C A 741.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=26.49;SB=-3.950e+02;SOR=0.997;VQSLOD=3.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:57:770,57,0 2 133016464 rs199960963 A G 745.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=33.90;SB=-3.110e+02;SOR=1.329;VQSLOD=4.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:57:774,57,0 2 133016466 rs201305763 A T 692.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=32.99;SB=-2.830e+02;SOR=1.508;VQSLOD=4.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:721,54,0 2 133016468 rs113740533 A C 717.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=34.18;SB=-2.790e+02;SOR=1.508;VQSLOD=5.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:746,54,0 2 133016470 rs200162842 G C 695.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=33.13;SB=-2.860e+02;SOR=1.508;VQSLOD=5.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:724,54,0 2 133016495 rs4518013 T G 581.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=27.70;SB=-2.391e+02;SOR=1.828;VQSLOD=4.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:45:610,45,0 2 133016520 rs74645575 A G 544.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=25.94;SB=-2.211e+02;SOR=1.508;VQSLOD=2.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:42:573,42,0 2 133016558 rs111427438 T C 470.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=27.69;SB=-2.031e+02;SOR=1.371;VQSLOD=4.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:36:499,36,0 2 133016570 rs141448448 A G 405.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=31.21;SB=-1.115e+02;SOR=1.609;VQSLOD=4.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:14:33:434,33,0 2 133016577 rs369625907 A C 403.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;MQRankSum=1.493;QD=28.84;ReadPosRankSum=-0.248;SB=-1.225e+02;SOR=0.693;VQSLOD=2.12;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,13:14:33:432,33,0 2 133016581 rs146334724 C G 405.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=31.21;SB=-1.215e+02;SOR=1.609;VQSLOD=4.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:14:33:434,33,0 2 133016614 rs200414721 A T 180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.989;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9541;MLEAC=1;MLEAF=0.500;MQ=40.42;MQ0=0;MQRankSum=1.211;QD=15.06;ReadPosRankSum=1.935;SB=-1.000e+02;SOR=0.631;VQSLOD=2.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,7:12:84:209,0,84 2 133016615 rs201589139 A T 216.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9541;MLEAC=1;MLEAF=0.500;MQ=40.42;MQ0=0;MQRankSum=2.193;QD=18.06;ReadPosRankSum=1.154;SB=-1.135e+02;SOR=1.179;VQSLOD=2.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,8:12:44:245,0,44 2 133016623 rs199795252 C T 209.85 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=42.04;MQ0=0;MQRankSum=-1.286;QD=19.08;ReadPosRankSum=1.439;SB=-7.997e+01;SOR=0.399;VQSLOD=1.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:1,10:11:17:238,0,17 2 133016624 rs74547095 A G 302.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=42.04;MQ0=0;QD=30.28;SB=-1.235e+02;SOR=1.085;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:11:24:318,24,0 2 133016663 rs79385463 T C 658.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;QD=28.64;SB=-1.195e+02;SOR=2.400;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:54:687,54,0 2 133016672 rs370796065 A G 651.85 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.772;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=18.9395;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;MQRankSum=-1.601;QD=29.63;ReadPosRankSum=-0.947;SB=-1.245e+02;SOR=1.101;VQSLOD=2.00;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,21:22:17:680,17,0 2 133016678 . G GTCTT 1170.73 PASS AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;QD=30.99;SB=-1.545e+02;SOR=3.056;VQSLOD=5.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:59:1208,59,0 2 133016679 . T TCTTTCTGC 834.74 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.813;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;MQRankSum=-0.241;QD=13.61;ReadPosRankSum=1.587;SB=-2.196e+02;SOR=1.981;VQSLOD=1.13;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,22:23:29:872,29,0 2 133016709 rs4392315 A G 1076.84 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;MQRankSum=-0.569;QD=29.10;ReadPosRankSum=0.269;SB=-1.653e+02;SOR=0.900;VQSLOD=2.24;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,35:37:18:1105,18,0 2 133016720 rs28653146 C T 1231.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.675;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;MQRankSum=-0.351;QD=29.33;ReadPosRankSum=0.325;SB=-1.991e+02;SOR=1.101;VQSLOD=2.25;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,40:42:30:1260,30,0 2 133016731 rs477475 T G 1426.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=31.02;SB=-3.190e+02;SOR=2.737;VQSLOD=4.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:48:99:1455,117,0 2 133016774 rs4306759 T C 1973.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8085;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=28.20;SB=-1.067e+03;SOR=1.244;VQSLOD=4.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2002,141,0 2 133016808 rs62165019 A G 2129.79 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.017;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9976;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=2.738;QD=26.29;ReadPosRankSum=-0.461;SB=-1.179e+03;SOR=0.771;VQSLOD=2.07;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:5,76:81:23:2158,23,0 2 133016819 rs62165020 T C 2750.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=32.75;SB=-1.239e+03;SOR=1.139;VQSLOD=5.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:85:99:2779,211,0 2 133016826 rs7426220 A G 2758.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6647;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=31.35;SB=-1.416e+03;SOR=1.116;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2787,217,0 2 133016853 rs7419481 T C 3382.77 PASS AC=2;AF=1.00;AN=2;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=33.16;SB=-1.567e+03;SOR=1.051;VQSLOD=5.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,102:102:99:3411,256,0 2 133016859 rs62165021 A C 3550.77 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9980;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=33.82;SB=-1.738e+03;SOR=1.064;VQSLOD=5.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:105:99:3579,262,0 2 133016872 rs62165022 A G 3818.77 PASS AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9975;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=34.10;SB=-1.986e+03;SOR=0.970;VQSLOD=4.98;culprit=DP GT:AD:DP:GQ:PL 1/1:0,112:112:99:3847,286,0 2 133016912 rs62165023 A G 3201.82 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.927;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9290;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=1.657;QD=26.03;ReadPosRankSum=0.333;SB=-1.665e+03;SOR=0.473;VQSLOD=0.805;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:10,113:124:29:3231,29,0 2 133016953 rs62165026 G A 3845.77 PASS AC=2;AF=1.00;AN=2;DB;DP=129;Dels=0.05;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.8640;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=31.27;SB=-1.971e+03;SOR=1.004;VQSLOD=5.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,123:123:99:3874,295,0 2 133016978 rs200960179 AGTGAGGTGGATGGCGGC A 16105.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.424;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.34;MQ0=0;MQRankSum=1.669;QD=30.24;ReadPosRankSum=1.930;SB=-7.639e+03;SOR=0.657;VQSLOD=0.836;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,83:113:99:16143,0,1737 2 133016996 rs113408139 T C 2956.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.202;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=802.2018;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=3.034;QD=30.48;ReadPosRankSum=-0.127;SB=-1.570e+03;SOR=0.760;VQSLOD=1.42;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:6,91:97:94:2985,94,0 2 133017021 rs62165027 T C 4986.77 PASS AC=2;AF=1.00;AN=2;DB;DP=154;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=27.1005;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=32.38;SB=-3.110e+03;SOR=0.693;VQSLOD=5.35;culprit=DP GT:AD:DP:GQ:PL 1/1:0,154:154:99:5015,358,0 2 133017034 rs56125207 A G 4448.77 PASS AC=2;AF=1.00;AN=2;DB;DP=150;Dels=0.03;ExcessHet=3.0103;FS=0.000;HaplotypeScore=77.1651;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=30.47;SB=-2.487e+03;SOR=0.838;VQSLOD=4.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,146:146:99:4477,334,0 2 133017060 rs62165031 A G 3300.74 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.867;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8305;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=2.385;QD=25.20;ReadPosRankSum=-0.445;SB=-1.660e+03;SOR=0.846;VQSLOD=0.093;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:9,122:131:6:3328,6,0 2 133017065 rs78035153 T G 3822.77 PASS AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=30.83;SB=-2.163e+03;SOR=1.064;VQSLOD=5.46;culprit=DP GT:AD:DP:GQ:PL 1/1:0,124:124:99:3851,277,0 2 133017067 rs75734619 C T 3505.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.352;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.949;QD=28.27;ReadPosRankSum=-0.087;SB=-1.750e+03;SOR=1.123;VQSLOD=0.658;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:4,120:124:99:3534,154,0 2 133017081 rs6430141 T A 3522.77 PASS AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=29.36;SB=-1.716e+03;SOR=1.421;VQSLOD=4.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,120:120:99:3551,265,0 2 133017082 rs150910679 T C 3298.78 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.376;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.873;QD=27.04;ReadPosRankSum=1.252;SB=-1.585e+03;SOR=0.586;VQSLOD=0.457;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:7,115:122:27:3327,27,0 2 133017097 rs74727834 T C 3357.77 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8939;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=30.81;SB=-1.647e+03;SOR=1.365;VQSLOD=5.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,109:110:99:3386,241,0 2 133017098 rs35521175 G A 3296.77 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8937;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=30.25;SB=-1.574e+03;SOR=1.365;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,109:110:99:3325,244,0 2 133017119 rs62165032 T C 2617.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9656;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=30.44;SB=-9.060e+02;SOR=2.196;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2646,205,0 2 133017158 . C CG 2270.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.470;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.145;QD=29.99;RPA=1,2;RU=G;ReadPosRankSum=-0.459;SB=-3.440e+02;SOR=0.693;STR;VQSLOD=2.24;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:4,58:62:20:2308,20,0 2 133017160 rs62165034 T C 1444.03 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9969;MLEAC=1;MLEAF=0.500;MQ=58.33;MQ0=0;MQRankSum=1.256;QD=27.77;ReadPosRankSum=-0.069;SB=-2.471e+02;SOR=0.920;VQSLOD=0.914;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,48:54:12:1472,0,12 2 133017163 rs62165035 C T 1560.82 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.139;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9993;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.335;QD=30.60;ReadPosRankSum=-1.242;SB=-2.391e+02;SOR=1.211;VQSLOD=2.08;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:3,48:51:19:1589,19,0 2 133017179 rs62165036 T G 1605.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.440;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9994;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.687;QD=32.12;ReadPosRankSum=-0.555;SB=-2.920e+02;SOR=1.863;VQSLOD=1.70;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,49:52:89:1634,89,0 2 133017210 rs62165037 A G 940.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=33.60;SB=-1.483e+02;SOR=2.833;VQSLOD=5.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:969,72,0 2 133017214 rs62165038 A G 807.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=32.31;SB=-1.483e+02;SOR=2.584;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:63:836,63,0 2 133017230 rs62165039 T C 624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=34.71;SB=-1.145e+02;SOR=2.303;VQSLOD=5.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:48:653,48,0 2 133017235 rs80192462 A C 610.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=33.93;SB=-1.235e+02;SOR=2.303;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:48:639,48,0 2 133017260 rs62165040 T G 427.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.77;MQ0=0;QD=30.55;SB=-1.771e+02;SOR=0.976;VQSLOD=5.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:15:36:452,36,0 2 133018747 rs76472477 T C 1357.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.911;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.8101;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=2;MQRankSum=-1.195;QD=24.69;ReadPosRankSum=1.499;SB=-5.910e+02;SOR=0.481;VQSLOD=1.79;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,54:55:74:1386,74,0 2 133018764 rs78645236 A G 1634.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=15.7118;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=2;MQRankSum=-1.149;QD=26.37;ReadPosRankSum=1.011;SB=-9.030e+02;SOR=0.334;VQSLOD=1.66;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,61:62:90:1663,90,0 2 133018770 . T C 1535.77 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.3946;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=1;QD=26.03;SB=-9.120e+02;SOR=0.836;VQSLOD=4.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:63:99:1564,114,0 2 133018777 rs79219152 A G 1606.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.3066;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=1;MQRankSum=-1.192;QD=24.34;ReadPosRankSum=0.761;SB=-1.030e+03;SOR=0.277;VQSLOD=1.72;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,65:66:87:1635,87,0 2 133018785 . T C 1701.77 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.1099;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=1;QD=25.03;SB=-1.065e+03;SOR=0.784;VQSLOD=3.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:1730,126,0 2 133018820 rs63749412 T C 1658.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.478;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.6712;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-1.334;QD=27.65;ReadPosRankSum=0.394;SB=-8.120e+02;SOR=1.179;VQSLOD=1.46;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,58:61:85:1687,85,0 2 133018824 rs62165053 T C 1544.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.5033;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=28.09;SB=-8.330e+02;SOR=1.159;VQSLOD=3.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1573,120,0 2 133018831 rs62165054 G C 1586.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.855;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4870;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=-1.156;QD=27.36;ReadPosRankSum=0.578;SB=-7.360e+02;SOR=1.412;VQSLOD=1.88;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,56:58:85:1615,85,0 2 133018837 rs62165055 T C 1644.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.259;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4250;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-1.121;QD=28.36;ReadPosRankSum=0.726;SB=-7.001e+02;SOR=1.412;VQSLOD=2.00;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,56:58:85:1673,85,0 2 133018840 . T C 1633.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.483;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3191;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-1.107;QD=27.69;ReadPosRankSum=0.273;SB=-6.751e+02;SOR=1.453;VQSLOD=1.74;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,57:59:85:1662,85,0 2 133018886 rs1058145 T C 1614.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.781;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.744;QD=32.30;ReadPosRankSum=-1.664;SB=-6.160e+02;SOR=0.787;VQSLOD=1.35;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,49:50:83:1643,83,0 2 133018891 . A T 1600.77 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=32.02;SB=-5.680e+02;SOR=1.958;VQSLOD=5.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1629,120,0 2 133018911 rs62165058 C T 1315.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.214;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.772;QD=29.24;ReadPosRankSum=-0.193;SB=-5.260e+02;SOR=0.836;VQSLOD=2.27;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,44:45:66:1344,66,0 2 133018959 rs76179303 C A 725.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-0.674;QD=25.92;ReadPosRankSum=1.735;SB=-2.860e+02;SOR=0.804;VQSLOD=1.36;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,27:28:29:754,29,0 2 133018964 rs78898857 A C 741.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=29.67;SB=-2.640e+02;SOR=1.893;VQSLOD=5.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:57:770,57,0 2 133018967 rs75244748 A G 608.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=27.67;SB=-2.221e+02;SOR=1.931;VQSLOD=4.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:45:637,45,0 2 133018978 rs77772472 A G 632.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=28.76;SB=-2.371e+02;SOR=1.931;VQSLOD=4.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:48:661,48,0 2 133018988 rs74935609 A G 473.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=29.61;SB=-1.473e+02;SOR=2.049;VQSLOD=5.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:36:502,36,0 2 133019006 . T C 379.77 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=31.65;SB=-4.076e+01;SOR=3.611;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:408,30,0 2 133019636 rs77304763 T C 1264.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.872;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=53.42;MQ0=0;MQRankSum=-2.297;QD=20.40;ReadPosRankSum=1.523;SB=-8.360e+02;SOR=0.521;VQSLOD=0.693;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,54:62:99:1293,0,191 2 133019646 rs112618513 T C 1230.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.540;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=55.40;MQ0=0;MQRankSum=-1.827;QD=21.22;ReadPosRankSum=2.770;SB=-7.990e+02;SOR=0.866;VQSLOD=1.15;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:10,48:58:99:1259,0,234 2 133019703 . T G 1407.77 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9983;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=35.36;SB=-6.470e+02;SOR=0.859;VQSLOD=4.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1436,105,0 2 133019710 rs79080455 A C 1332.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.9953;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=31.97;SB=-6.430e+02;SOR=0.749;VQSLOD=5.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:99:1361,99,0 2 133019766 rs79671028 G A 963.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8657;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;QD=28.35;SB=-5.530e+02;SOR=1.085;VQSLOD=4.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:72:992,72,0 2 133019781 rs112877637 G A 606.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.721;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.9967;MLEAC=1;MLEAF=0.500;MQ=45.53;MQ0=0;MQRankSum=-1.833;QD=17.85;ReadPosRankSum=2.122;SB=-4.080e+02;SOR=0.465;VQSLOD=1.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,26:34:99:635,0,151 2 133019793 rs201153258 A G 577.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.141;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.68;MQ0=0;MQRankSum=-1.047;QD=18.06;ReadPosRankSum=1.814;SB=-3.860e+02;SOR=0.859;VQSLOD=2.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,24:32:99:606,0,182 2 133019795 rs199750508 T C 566.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.070;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.39;MQ0=0;MQRankSum=-0.663;QD=18.28;ReadPosRankSum=1.303;SB=-3.740e+02;SOR=0.694;VQSLOD=2.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,24:31:99:595,0,169 2 133019802 rs200693325 C A 566.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.143;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=44.17;MQ0=0;MQRankSum=-0.759;QD=18.28;ReadPosRankSum=0.260;SB=-3.770e+02;SOR=0.694;VQSLOD=2.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,24:31:99:595,0,184 2 133019822 rs376996232 A G 460.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8315;MLEAC=1;MLEAF=0.500;MQ=46.05;MQ0=0;MQRankSum=-0.031;QD=19.20;ReadPosRankSum=1.135;SB=-1.880e+02;SOR=0.527;VQSLOD=2.37;culprit=FS GT:AD:DP:GQ:PL 0/1:8,16:24:99:489,0,212 2 133019823 rs113093815 T C 438.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.075;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8315;MLEAC=1;MLEAF=0.500;MQ=46.01;MQ0=0;MQRankSum=-0.097;QD=19.08;ReadPosRankSum=1.293;SB=-1.790e+02;SOR=0.646;VQSLOD=2.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,15:23:99:467,0,172 2 133019824 rs370088473 A C 410.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=46.01;MQ0=0;MQRankSum=-0.097;QD=17.86;ReadPosRankSum=1.358;SB=-1.740e+02;SOR=0.646;VQSLOD=2.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,15:23:99:439,0,182 2 133019825 rs375322252 A G 432.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=46.01;MQ0=0;MQRankSum=-0.097;QD=18.82;ReadPosRankSum=1.390;SB=-1.590e+02;SOR=0.646;VQSLOD=1.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,15:23:99:461,0,223 2 133019827 rs377588429 T C 443.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.087;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=46.01;MQ0=0;MQRankSum=-0.097;QD=19.29;ReadPosRankSum=0.972;SB=-1.740e+02;SOR=0.646;VQSLOD=2.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,15:23:99:472,0,214 2 133019831 rs79463135 T G 394.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.594;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=46.01;MQ0=0;MQRankSum=-0.097;QD=17.16;ReadPosRankSum=1.002;SB=-1.340e+02;SOR=0.646;VQSLOD=2.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,15:23:99:423,0,213 2 133019832 rs79611534 T A,G 625.77 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.746;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=46.01;MQ0=0;MQRankSum=-2.251;QD=27.21;ReadPosRankSum=0.765;SB=-2.090e+02;SOR=1.230;VQSLOD=1.76;culprit=MQRankSum GT:AD:DP:GQ:PL 1/2:2,6,15:23:99:654,449,473,166,0,169 2 133019878 rs79135039 T C 377.28 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.548;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.8049;MLEAC=1;MLEAF=0.500;MQ=40.03;MQ0=0;MQRankSum=-1.796;QD=17.15;ReadPosRankSum=-0.293;SB=-1.843e+02;SOR=0.693;VQSLOD=2.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,20:22:9:405,0,9 2 133019879 rs142946666 G A 314.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.8049;MLEAC=1;MLEAF=0.500;MQ=40.03;MQ0=0;MQRankSum=-1.425;QD=14.31;ReadPosRankSum=0.917;SB=-1.640e+02;SOR=0.693;VQSLOD=1.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,18:22:84:343,0,84 2 133019881 rs370583468 T C 239.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.9813;MLEAC=1;MLEAF=0.500;MQ=40.03;MQ0=0;MQRankSum=-1.309;QD=10.90;ReadPosRankSum=-0.378;SB=-1.280e+02;SOR=0.693;VQSLOD=1.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,16:22:99:268,0,127 2 133019884 rs149765934 A C 320.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9821;MLEAC=1;MLEAF=0.500;MQ=40.03;MQ0=0;MQRankSum=-1.425;QD=14.58;ReadPosRankSum=1.136;SB=-1.680e+02;SOR=0.693;VQSLOD=1.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,18:22:85:349,0,85 2 133019886 rs2311279 T C 337.85 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.9773;MLEAC=1;MLEAF=0.500;MQ=40.03;MQ0=0;MQRankSum=-1.730;QD=16.89;ReadPosRankSum=0.065;SB=-1.310e+02;SOR=0.693;VQSLOD=2.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,18:22:12:349,0,12 2 133019901 rs71997229 T TTG 920.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.19;MQ0=0;MQRankSum=-1.384;QD=22.59;ReadPosRankSum=-0.689;SB=-3.860e+02;SOR=1.127;VQSLOD=2.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,20:22:52:958,0,52 2 133019913 rs111896746 T C 403.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.954;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9992;MLEAC=1;MLEAF=0.500;MQ=43.61;MQ0=0;MQRankSum=-0.851;QD=13.46;ReadPosRankSum=2.008;SB=-2.080e+02;SOR=0.892;VQSLOD=0.842;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,23:30:99:432,0,174 2 133019978 rs78210434 A G 326.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.06;MQ0=0;MQRankSum=0.670;QD=16.34;ReadPosRankSum=-0.307;SB=-1.710e+02;SOR=0.430;VQSLOD=2.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,15:20:99:355,0,154 2 133019982 rs76548138 A C 312.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=47.19;MQ0=0;MQRankSum=0.755;QD=17.38;ReadPosRankSum=0.198;SB=-1.070e+02;SOR=0.793;VQSLOD=2.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,13:18:99:341,0,154 2 133020005 rs80278536 G C 292.78 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=50.74;MQ0=0;MQRankSum=0.940;QD=22.52;ReadPosRankSum=-2.102;SB=-8.297e+01;SOR=0.804;VQSLOD=2.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,11:16:49:318,0,49 2 133020018 rs113413176 T G 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.848;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9997;MLEAC=1;MLEAF=0.500;MQ=51.97;MQ0=0;MQRankSum=0.571;QD=14.52;ReadPosRankSum=-0.688;SB=-6.000e+01;SOR=1.270;VQSLOD=2.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,9:15:99:246,0,127 2 133020026 rs112650155 A G 155.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9953;MLEAC=1;MLEAF=0.500;MQ=52.97;MQ0=0;MQRankSum=0.842;QD=11.98;ReadPosRankSum=-0.911;SB=-7.100e+01;SOR=0.892;VQSLOD=2.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,7:13:99:184,0,126 2 133020040 rs192325340 A G 76.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9982;MLEAC=1;MLEAF=0.500;MQ=50.78;MQ0=0;MQRankSum=0.096;QD=7.68;ReadPosRankSum=0.405;SB=-3.300e+01;SOR=0.892;VQSLOD=2.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,4:10:99:105,0,146 2 133020061 rs77748634 A G 76.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=50.78;MQ0=0;MQRankSum=0.096;QD=7.68;ReadPosRankSum=0.825;SB=-2.801e+01;SOR=0.892;VQSLOD=1.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,4:10:99:105,0,146 2 133020082 rs35316167 T G 77.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=53.06;MQ0=0;MQRankSum=-0.431;QD=7.07;ReadPosRankSum=1.200;SB=-3.000e+01;SOR=1.270;VQSLOD=1.71;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:99:106,0,146 2 133020286 rs367751370 G A 193.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=54.74;MQ0=0;MQRankSum=-1.834;QD=19.38;ReadPosRankSum=-1.501;SB=0.00;SOR=2.303;VQSLOD=0.102;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,8:10:55:222,0,55 2 133020299 rs113929469 A C 234.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=54.01;MQ0=0;MQRankSum=-1.922;QD=21.34;ReadPosRankSum=-0.498;SB=-4.176e+01;SOR=1.179;VQSLOD=1.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,9:11:49:263,0,49 2 133020302 . T C 231.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=54.01;MQ0=0;MQRankSum=-1.922;QD=21.07;ReadPosRankSum=0.023;SB=-3.876e+01;SOR=1.179;VQSLOD=1.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,9:11:52:260,0,52 2 133020316 rs79805392 A C 234.88 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.37;MQ0=0;MQRankSum=-1.282;QD=23.49;ReadPosRankSum=-1.645;SB=-4.276e+01;SOR=1.802;VQSLOD=1.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:1,9:10:16:263,0,16 2 133020317 rs376670237 T A 231.90 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.37;MQ0=0;MQRankSum=-1.282;QD=23.19;ReadPosRankSum=-1.645;SB=-4.176e+01;SOR=1.802;VQSLOD=1.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:1,9:10:15:260,0,15 2 133020333 rs78313527 A G 292.28 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.672;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.46;MQ0=1;MQRankSum=-1.310;QD=22.48;ReadPosRankSum=-0.146;SB=-4.276e+01;SOR=2.147;VQSLOD=1.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:1,12:13:9:320,0,9 2 133020348 rs79906334 T C 284.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.843;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8947;MLEAC=1;MLEAF=0.500;MQ=44.11;MQ0=1;MQRankSum=-1.268;QD=15.82;ReadPosRankSum=1.200;SB=-4.276e+01;SOR=2.235;VQSLOD=0.737;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,15:18:32:313,0,32 2 133020392 rs112700211 T C 300.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=41.64;MQ0=3;MQRankSum=-1.785;QD=11.14;ReadPosRankSum=-0.200;SB=-2.230e+02;SOR=1.179;VQSLOD=1.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,20:27:99:329,0,162 2 133020395 rs374698747 A C 287.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9992;MLEAC=1;MLEAF=0.500;MQ=41.93;MQ0=3;MQRankSum=-1.802;QD=10.28;ReadPosRankSum=0.030;SB=-1.610e+02;SOR=0.892;VQSLOD=2.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,20:28:99:316,0,192 2 133020396 rs369337333 A G 291.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9992;MLEAC=1;MLEAF=0.500;MQ=41.93;MQ0=3;MQRankSum=-1.802;QD=10.42;ReadPosRankSum=-0.030;SB=-2.200e+02;SOR=0.892;VQSLOD=2.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,20:28:99:320,0,193 2 133020402 rs112221181 T G 299.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.253;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9992;MLEAC=1;MLEAF=0.500;MQ=41.93;MQ0=3;MQRankSum=-1.802;QD=10.71;ReadPosRankSum=-0.515;SB=-2.120e+02;SOR=0.892;VQSLOD=2.30;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,20:28:99:328,0,196 2 133020724 . C T 132.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.08;MQ0=1;MQRankSum=-1.471;QD=10.21;ReadPosRankSum=-0.817;SB=-1.390e+02;SOR=0.693;VQSLOD=2.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,9:13:71:161,0,71 2 133023143 rs2315362 T C 281.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=25.62;SB=-1.333e+02;SOR=1.270;VQSLOD=3.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:310,24,0 2 133023157 rs62166007 A G 272.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=27.28;SB=-1.463e+02;SOR=1.085;VQSLOD=4.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:301,24,0 2 133023159 rs62166008 A C 269.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=26.98;SB=-1.233e+02;SOR=1.085;VQSLOD=4.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:298,24,0 2 133023213 rs9711678 G C 301.78 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.56;SB=-2.111e+02;SOR=0.693;VQSLOD=1.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:24:330,24,0 2 133023245 rs77916488 T G 353.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=27.21;SB=-2.471e+02;SOR=0.836;VQSLOD=3.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:27:382,27,0 2 133023246 rs74728908 T C 348.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=26.83;SB=-2.211e+02;SOR=0.836;VQSLOD=4.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:27:377,27,0 2 133023283 . A ACGGT 982.73 PASS AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=28.65;SB=-3.961e+02;SOR=1.179;VQSLOD=5.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:1020,39,0 2 133023288 . C G 300.78 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=27.34;SB=-1.195e+02;SOR=1.270;VQSLOD=5.22;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,11:11:24:329,24,0 2 133023291 rs370975012 A G 297.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=27.07;SB=-1.115e+02;SOR=1.270;VQSLOD=3.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:326,24,0 2 133023300 rs373794455 A C 309.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=28.16;SB=-1.225e+02;SOR=1.270;VQSLOD=4.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:338,24,0 2 133023301 rs201668736 G T 301.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=27.43;SB=-1.225e+02;SOR=1.270;VQSLOD=3.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:330,24,0 2 133023303 rs76871822 T C 285.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=25.98;SB=-1.245e+02;SOR=1.270;VQSLOD=3.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:314,24,0 2 133023313 rs4341990 T G 296.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=24.73;SB=-1.115e+02;SOR=1.445;VQSLOD=3.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:24:325,24,0 2 133025551 rs78040156 A C 224.84 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=22.48;SB=-8.497e+01;SOR=1.609;VQSLOD=3.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:18:253,18,0 2 133025554 rs75349994 T C 225.84 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=22.58;SB=-8.497e+01;SOR=1.609;VQSLOD=2.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:18:254,18,0 2 133025566 . A C 266.80 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=24.25;SB=-7.497e+01;SOR=1.802;VQSLOD=3.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:21:295,21,0 2 133025584 rs28729781 A G 245.80 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=22.35;SB=-8.197e+01;SOR=1.802;VQSLOD=3.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:21:274,21,0 2 133025598 rs74463961 T C 349.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=26.91;SB=-1.205e+02;SOR=1.609;VQSLOD=4.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:27:378,27,0 2 133025599 rs78310556 T C 344.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=26.52;SB=-1.115e+02;SOR=1.609;VQSLOD=4.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:27:373,27,0 2 133025613 . A G 379.77 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=27.13;SB=-1.603e+02;SOR=1.329;VQSLOD=4.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:30:408,30,0 2 133025645 rs62166688 A C 424.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.9983;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=28.32;SB=-1.831e+02;SOR=1.112;VQSLOD=4.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:33:453,33,0 2 133025652 . C CAGCG 963.73 PASS AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=28.67;SB=-3.243e+02;SOR=1.609;VQSLOD=5.32;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,13:13:39:1001,39,0 2 133025732 rs4381828 T C 690.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=25.58;SB=-4.950e+02;SOR=0.765;VQSLOD=2.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:54:719,54,0 2 133025752 rs4245833 A G 632.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=26.37;SB=-3.930e+02;SOR=0.859;VQSLOD=2.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:48:661,48,0 2 133025774 . A G 595.77 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=27.08;SB=-3.430e+02;SOR=1.085;VQSLOD=4.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:45:624,45,0 2 133025777 rs62166691 A C 587.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=26.72;SB=-3.430e+02;SOR=1.085;VQSLOD=4.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:45:616,45,0 2 133025779 rs62166692 T C 569.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=25.90;SB=-3.440e+02;SOR=1.085;VQSLOD=3.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:45:598,45,0 2 133026757 rs62166711 T C 292.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.62;SB=-1.751e+02;SOR=0.859;VQSLOD=4.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:321,24,0 2 133026767 rs62166712 T C 300.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7337;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=27.34;SB=-1.841e+02;SOR=0.859;VQSLOD=4.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:329,24,0 2 133027465 rs62166753 A G 157.90 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=40.66;MQ0=2;QD=12.15;SB=-1.185e+02;SOR=0.859;VQSLOD=2.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:15:186,15,0 2 133028456 rs201533411 G A 92.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.8840;MLEAC=1;MLEAF=0.500;MQ=42.08;MQ0=4;MQRankSum=1.427;QD=4.42;ReadPosRankSum=-0.528;SB=-2.402e+01;SOR=1.075;VQSLOD=1.58;culprit=QD GT:AD:DP:GQ:PL 0/1:13,8:21:99:121,0,281 2 133028995 . A AAGAG 588.74 PASS AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=42.37;MQ0=0;QD=31.95;RPA=1,3;RU=AG;SB=-2.165e+02;SOR=1.402;STR;VQSLOD=5.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,9:9:27:626,27,0 2 133029207 rs62640104 G C 298.90 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=42.89;MQ0=4;MQRankSum=1.451;QD=15.73;ReadPosRankSum=0.362;SB=-1.010e+02;SOR=0.892;VQSLOD=2.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,13:19:15:327,0,15 2 133029218 rs62640105 A G 274.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=29.8578;MLEAC=1;MLEAF=0.500;MQ=44.80;MQ0=4;MQRankSum=0.515;QD=13.08;ReadPosRankSum=1.902;SB=-2.502e+01;SOR=0.418;VQSLOD=0.457;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,13:21:80:303,0,80 2 133029223 . GAGAC G 762.73 PASS AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=30.12;SB=-1.885e+02;SOR=2.147;VQSLOD=4.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:14:39:800,39,0 2 133029235 . CAG C 533.73 PASS AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=29.42;RPA=3,2;RU=AG;SB=-1.365e+02;SOR=2.147;STR;VQSLOD=5.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:571,39,0 2 133029339 rs112743763 A C 604.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=52.1914;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=1;QD=28.80;SB=-2.810e+02;SOR=1.402;VQSLOD=5.37;culprit=FS GT:AD:DP:GQ:PL 1/1:1,20:21:45:633,45,0 2 133029350 rs62167468 T C 627.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=28.53;SB=-2.780e+02;SOR=1.329;VQSLOD=5.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:48:656,48,0 2 133029365 rs62167469 G A 666.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=30.31;SB=-3.170e+02;SOR=1.329;VQSLOD=4.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:51:695,51,0 2 133029620 rs200538156 C CG 222.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.42;MQ0=0;MQRankSum=-1.221;QD=22.27;ReadPosRankSum=1.111;SB=-1.280e+02;SOR=0.693;VQSLOD=1.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,8:10:31:260,0,31 2 133029621 rs78595531 A G 245.03 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9704;MLEAC=1;MLEAF=0.500;MQ=50.42;MQ0=0;MQRankSum=-0.674;QD=24.50;ReadPosRankSum=1.645;SB=-1.260e+02;SOR=0.525;VQSLOD=1.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:1,9:10:12:273,0,12 2 133029652 rs62167472 C G 274.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=27.48;SB=-1.801e+02;SOR=0.693;VQSLOD=4.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:303,24,0 2 133030451 rs77388364 G C 255.80 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=25.58;SB=-8.097e+01;SOR=1.085;VQSLOD=4.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:21:284,21,0 2 133030455 rs76893917 A G 291.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=26.53;SB=-8.197e+01;SOR=1.270;VQSLOD=4.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:320,24,0 2 133030458 rs75553718 C G 309.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=25.82;SB=-1.175e+02;SOR=1.022;VQSLOD=2.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:24:338,24,0 2 133030463 rs62167511 C T 288.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=24.07;SB=-1.205e+02;SOR=1.022;VQSLOD=3.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:24:317,24,0 2 133030479 rs62167512 T A 288.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=28.88;SB=-1.185e+02;SOR=1.609;VQSLOD=3.96;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,10:10:24:317,24,0 2 133030494 . T TC 426.73 PASS AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=29.63;SB=-1.833e+02;SOR=1.270;VQSLOD=4.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:464,33,0 2 133030496 rs62167513 C T 299.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=29.98;SB=-1.573e+02;SOR=1.085;VQSLOD=4.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:328,24,0 2 133030518 rs151155269 A ACCC 715.73 PASS AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=26.64;RPA=1,4;RU=C;SB=-3.681e+02;SOR=0.693;STR;VQSLOD=4.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:753,36,0 2 133030532 rs201110497 T C 435.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=31.13;SB=-2.880e+02;SOR=0.693;VQSLOD=4.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:33:464,33,0 2 133030535 rs371742918 G A 98.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.175;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.07;MQ0=0;MQRankSum=0.922;QD=7.05;ReadPosRankSum=-1.378;SB=-5.400e+01;SOR=0.905;VQSLOD=1.80;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:14:99:127,0,260 2 133030538 rs75519934 C T 422.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=30.20;SB=-2.740e+02;SOR=0.693;VQSLOD=4.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:33:451,33,0 2 133030546 rs78591446 T C 381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=29.37;SB=-2.401e+02;SOR=0.836;VQSLOD=4.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:410,30,0 2 133030548 rs75346338 T C 365.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=28.14;SB=-2.211e+02;SOR=0.836;VQSLOD=4.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:394,30,0 2 133030579 rs62167514 C G 347.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=31.62;SB=-2.031e+02;SOR=0.859;VQSLOD=5.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:376,27,0 2 133030586 rs62167515 A G 337.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=33.78;SB=-2.001e+02;SOR=0.693;VQSLOD=5.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:366,27,0 2 133030600 rs77611192 G C 342.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=34.28;SB=-1.653e+02;SOR=1.085;VQSLOD=4.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:371,27,0 2 133030626 rs62167516 T C 289.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=26.34;SB=-1.593e+02;SOR=1.270;VQSLOD=4.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:318,24,0 2 133030630 rs75610372 T C 226.84 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.68;SB=-1.235e+02;SOR=1.085;VQSLOD=3.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:18:255,18,0 2 133030631 . G C 247.77 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.28;MQ0=0;QD=27.53;SB=-1.603e+02;SOR=0.892;VQSLOD=4.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,9:10:18:258,18,0 2 133030637 rs113631335 T G 207.03 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9911;MLEAC=1;MLEAF=0.500;MQ=58.28;MQ0=0;MQRankSum=1.036;QD=20.70;ReadPosRankSum=1.645;SB=-1.653e+02;SOR=0.307;VQSLOD=1.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:1,9:10:12:235,0,12 2 133030956 rs2315360 C G 351.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=29.31;SB=-2.061e+02;SOR=1.022;VQSLOD=4.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:380,30,0 2 133030971 rs62167526 T C 319.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=29.07;SB=-1.483e+02;SOR=1.270;VQSLOD=4.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:348,27,0 2 133030995 rs62167527 T C 375.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=25.05;SB=-2.380e+02;SOR=0.818;VQSLOD=2.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:30:404,30,0 2 133031030 . G A 399.77 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=24.99;SB=-2.510e+02;SOR=0.941;VQSLOD=3.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:30:428,30,0 2 133031035 rs62167529 T C 404.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=25.30;SB=-2.580e+02;SOR=0.941;VQSLOD=3.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:30:433,30,0 2 133031041 . T A 395.77 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=24.74;SB=-2.510e+02;SOR=0.941;VQSLOD=3.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:30:424,30,0 2 133031044 rs78840208 T C 315.94 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.42;MQ0=0;MQRankSum=1.697;QD=19.75;ReadPosRankSum=-0.875;SB=-2.082e+02;SOR=0.976;VQSLOD=2.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,14:16:14:344,0,14 2 133031057 rs75805785 A G 317.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=24.44;SB=-2.161e+02;SOR=0.836;VQSLOD=2.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:24:346,24,0 2 133031058 rs79922639 C A 294.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=24.57;SB=-1.831e+02;SOR=1.022;VQSLOD=3.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:24:323,24,0 2 133031065 . G T 286.78 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=23.90;SB=-1.771e+02;SOR=1.022;VQSLOD=3.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:24:315,24,0 2 133031071 . T C 287.78 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=23.98;SB=-1.911e+02;SOR=1.022;VQSLOD=3.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:24:316,24,0 2 133031179 . C A 238.78 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=23.88;SB=-1.065e+02;SOR=1.609;VQSLOD=4.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:267,24,0 2 133031181 rs79092614 A G 219.80 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=21.98;SB=-1.175e+02;SOR=1.609;VQSLOD=3.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:21:248,21,0 2 133031189 rs77636252 C G 338.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.14;MQ0=0;QD=28.23;SB=-1.235e+02;SOR=1.981;VQSLOD=4.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:367,30,0 2 133031194 rs78465009 G A 328.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.14;MQ0=0;QD=27.40;SB=-1.115e+02;SOR=1.981;VQSLOD=4.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:357,30,0 2 133031196 . A G 377.77 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=29.06;SB=-1.205e+02;SOR=2.147;VQSLOD=5.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:406,33,0 2 133031207 rs62167530 A G 728.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-0.705;QD=29.15;ReadPosRankSum=1.823;SB=-1.533e+02;SOR=1.688;VQSLOD=1.71;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,24:25:30:757,30,0 2 133031214 rs62167531 T C 739.78 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.595;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-0.705;QD=29.59;ReadPosRankSum=1.823;SB=-1.603e+02;SOR=1.688;VQSLOD=1.69;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,24:25:26:768,26,0 2 133031216 rs2315357 T C 791.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.779;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-0.667;QD=29.32;ReadPosRankSum=1.536;SB=-1.791e+02;SOR=1.473;VQSLOD=0.841;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,26:27:32:820,32,0 2 133031229 rs62167532 T C 826.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.747;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-0.581;QD=25.05;ReadPosRankSum=0.912;SB=-4.380e+02;SOR=0.610;VQSLOD=2.24;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,32:33:32:855,32,0 2 133031270 rs76450402 GT G 1898.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.248;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.441;QD=25.39;ReadPosRankSum=-0.736;SB=-8.190e+02;SOR=0.473;VQSLOD=2.23;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,44:45:85:1936,85,0 2 133031286 rs80089146 C A 1181.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.242;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.240;QD=27.48;ReadPosRankSum=-1.415;SB=-6.420e+02;SOR=0.420;VQSLOD=1.98;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,42:43:59:1210,59,0 2 133031287 rs78178387 A G 1265.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.240;QD=29.44;ReadPosRankSum=-1.294;SB=-6.850e+02;SOR=0.420;VQSLOD=1.51;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,42:43:59:1294,59,0 2 133031302 rs62167533 T C 1476.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.789;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9928;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.160;QD=26.85;ReadPosRankSum=-0.600;SB=-8.810e+02;SOR=0.287;VQSLOD=1.74;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,54:55:77:1505,77,0 2 133031311 rs62163760 A G 1509.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9928;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.208;QD=26.96;ReadPosRankSum=-0.372;SB=-9.690e+02;SOR=0.343;VQSLOD=2.11;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,55:57:78:1538,78,0 2 133031340 rs62163761 A G 1505.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.992;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.593;QD=27.38;ReadPosRankSum=1.732;SB=-8.710e+02;SOR=0.808;VQSLOD=1.86;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,53:55:76:1534,76,0 2 133031370 rs72987834 G C 1286.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.145;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-0.472;QD=25.23;ReadPosRankSum=-0.238;SB=-7.940e+02;SOR=0.435;VQSLOD=2.21;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,50:51:65:1315,65,0 2 133031388 rs76601725 A G 1028.41 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.464;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.839;QD=23.92;ReadPosRankSum=-1.010;SB=-6.371e+02;SOR=1.075;VQSLOD=2.28;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,41:43:8:1056,8,0 2 133031393 rs79060741 T C 1097.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.420;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-0.579;QD=26.77;ReadPosRankSum=-1.479;SB=-6.410e+02;SOR=0.432;VQSLOD=1.70;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,40:41:48:1126,48,0 2 133031409 rs112102523 A C 926.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.687;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.632;QD=25.74;ReadPosRankSum=-0.771;SB=-4.530e+02;SOR=0.735;VQSLOD=2.35;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,35:36:38:955,38,0 2 133031412 rs111685066 G A 959.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.723;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.632;QD=26.66;ReadPosRankSum=-0.578;SB=-4.400e+02;SOR=0.735;VQSLOD=2.36;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,35:36:37:988,37,0 2 133031420 rs111702339 T C 903.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.341;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-0.657;QD=26.58;ReadPosRankSum=-0.510;SB=-3.590e+02;SOR=0.941;VQSLOD=2.35;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,33:34:38:932,38,0 2 133031423 rs113010400 C T 903.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.031;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.671;QD=27.39;ReadPosRankSum=-0.368;SB=-3.460e+02;SOR=0.892;VQSLOD=2.19;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,32:33:42:932,42,0 2 133031425 rs113205740 A G 929.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.873;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.671;QD=28.17;ReadPosRankSum=-0.368;SB=-3.330e+02;SOR=0.892;VQSLOD=2.27;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,32:33:35:958,35,0 2 133031440 rs28595615 G C 812.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-0.718;QD=27.09;ReadPosRankSum=0.116;SB=-2.770e+02;SOR=1.121;VQSLOD=2.38;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,29:30:40:841,40,0 2 133031458 rs78839649 A G 557.41 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.092;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.792;QD=29.34;ReadPosRankSum=1.371;SB=-1.065e+02;SOR=1.609;VQSLOD=1.75;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,18:19:8:585,8,0 2 133031476 rs78361810 T C 463.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=33.80;SB=-4.276e+01;SOR=3.611;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:492,36,0 2 133031477 rs77257584 G A 455.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=30.61;SB=-4.076e+01;SOR=3.611;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:484,36,0 2 133031487 rs182036214 T C 415.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=34.65;SB=-7.997e+01;SOR=2.670;VQSLOD=5.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:444,36,0 2 133031704 rs76623179 C G 489.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=28.81;SB=-3.230e+02;SOR=0.804;VQSLOD=4.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:39:518,39,0 2 133031707 rs79752276 G C 494.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=29.10;SB=-2.870e+02;SOR=0.804;VQSLOD=4.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:39:523,39,0 2 133031718 rs77600405 A G 551.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=32.46;SB=-3.240e+02;SOR=0.804;VQSLOD=4.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:580,42,0 2 133031733 rs77486388 T G 544.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=32.05;SB=-3.190e+02;SOR=0.804;VQSLOD=5.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:573,42,0 2 133031747 rs75074651 T C 510.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=34.05;SB=-2.840e+02;SOR=0.818;VQSLOD=5.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:539,42,0 2 133031768 rs78152028 A G 396.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=30.52;SB=-2.311e+02;SOR=0.836;VQSLOD=4.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:425,33,0 2 133031772 rs74538995 T C 404.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=33.73;SB=-2.191e+02;SOR=0.693;VQSLOD=4.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:433,33,0 2 133031779 rs79559158 T C 376.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=29.38;SB=-1.991e+02;SOR=0.693;VQSLOD=4.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:405,30,0 2 133031780 rs142511315 T C 354.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=34.40;SB=-1.831e+02;SOR=0.693;VQSLOD=5.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:383,30,0 2 133031783 rs113613811 G C 385.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=29.34;SB=-2.061e+02;SOR=0.693;VQSLOD=4.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:414,30,0 2 133031799 rs76125916 C G 354.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=27.29;SB=-1.653e+02;SOR=1.609;VQSLOD=3.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:27:383,27,0 2 133031813 rs77767586 T G 273.80 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=24.89;SB=-1.553e+02;SOR=1.270;VQSLOD=4.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:21:302,21,0 2 133032176 rs80337092 T C 295.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=1;QD=29.58;SB=0.00;SOR=4.615;VQSLOD=5.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:324,27,0 2 133032177 rs75245573 G T 296.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=1;QD=29.68;SB=0.00;SOR=4.615;VQSLOD=5.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:325,27,0 2 133032202 rs79742005 T C 378.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=1;QD=29.14;SB=-6.997e+01;SOR=2.670;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:407,33,0 2 133032203 rs77252855 T G 320.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=1;QD=24.67;SB=-7.297e+01;SOR=2.670;VQSLOD=5.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:349,30,0 2 133032332 rs79602047 A G 533.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.00;MQ=40.44;MQ0=0;QD=29.65;SB=-2.131e+02;SOR=1.493;VQSLOD=3.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:562,45,0 2 133032344 rs77832488 T C 802.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.13;MQ0=0;QD=29.73;SB=-4.330e+02;SOR=0.922;VQSLOD=4.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:69:831,69,0 2 133032356 rs78666315 T C 764.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=31.87;SB=-3.940e+02;SOR=0.859;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:793,66,0 2 133032358 rs79500599 G C 818.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=34.12;SB=-4.030e+02;SOR=0.859;VQSLOD=2.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:847,66,0 2 133032361 rs75490569 T C 775.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=32.32;SB=-4.030e+02;SOR=0.859;VQSLOD=4.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:804,66,0 2 133032365 . C A 777.77 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=32.41;SB=-3.940e+02;SOR=0.859;VQSLOD=4.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:806,66,0 2 133032366 rs79835094 T C 805.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;QD=32.23;SB=-4.330e+02;SOR=0.770;VQSLOD=5.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:834,69,0 2 133032371 rs77170149 T C 881.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=32.66;SB=-4.670e+02;SOR=0.765;VQSLOD=4.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:75:910,75,0 2 133032385 rs78932547 T C 998.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;QD=32.22;SB=-5.390e+02;SOR=0.756;VQSLOD=4.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:81:1027,81,0 2 133032394 rs76917410 A G 982.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=31.70;SB=-5.370e+02;SOR=0.892;VQSLOD=4.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:81:1011,81,0 2 133032402 rs373746742 T C 926.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=33.10;SB=-4.350e+02;SOR=0.997;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:75:955,75,0 2 133032410 rs376164608 G A 817.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=32.71;SB=-3.390e+02;SOR=1.358;VQSLOD=5.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:66:846,66,0 2 133032414 rs370895296 C G 771.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=32.16;SB=-3.960e+02;SOR=1.051;VQSLOD=2.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:800,60,0 2 133032421 rs373939649 A G 660.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=30.03;SB=-3.300e+02;SOR=1.329;VQSLOD=5.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:54:689,54,0 2 133032422 rs72873958 T C 697.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=31.72;SB=-3.200e+02;SOR=1.329;VQSLOD=5.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:54:726,54,0 2 133032433 rs368613340 T C 758.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=31.62;SB=-3.680e+02;SOR=1.051;VQSLOD=5.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:787,60,0 2 133032438 rs150808190 A G 749.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=31.24;SB=-3.900e+02;SOR=1.051;VQSLOD=4.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:778,60,0 2 133032441 rs201148911 T C 768.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=32.03;SB=-3.680e+02;SOR=1.051;VQSLOD=4.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:797,60,0 2 133032443 rs77785958 G T 782.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=31.31;SB=-3.990e+02;SOR=1.136;VQSLOD=5.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:63:811,63,0 2 133032448 rs78619504 A C 829.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=33.19;SB=-3.990e+02;SOR=1.136;VQSLOD=4.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:63:858,63,0 2 133032469 rs79263765 T C 806.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=31.03;SB=-4.420e+02;SOR=0.846;VQSLOD=4.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:63:835,63,0 2 133032477 rs80235889 T C 746.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=31.12;SB=-4.050e+02;SOR=0.859;VQSLOD=4.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:57:775,57,0 2 133032481 rs77490993 T C 772.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=33.60;SB=-4.580e+02;SOR=0.776;VQSLOD=4.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:801,57,0 2 133032505 rs77049974 T C 836.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=29.88;SB=-5.130e+02;SOR=0.693;VQSLOD=5.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:66:865,66,0 2 133032510 rs111821905 T C 829.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=29.63;SB=-5.030e+02;SOR=0.836;VQSLOD=4.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:66:858,66,0 2 133032513 rs112749017 T C 793.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=29.40;SB=-5.050e+02;SOR=0.765;VQSLOD=5.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:63:822,63,0 2 133032528 . T C 887.77 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=30.61;SB=-4.210e+02;SOR=1.255;VQSLOD=4.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:916,72,0 2 133032536 rs112718918 T C 852.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=29.41;SB=-4.110e+02;SOR=1.255;VQSLOD=5.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:69:881,69,0 2 133032541 rs113118700 T C 850.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=30.38;SB=-4.020e+02;SOR=1.179;VQSLOD=4.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:66:879,66,0 2 133032546 rs74636615 T C 805.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=30.99;SB=-3.390e+02;SOR=1.445;VQSLOD=4.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:66:834,66,0 2 133032576 rs112114718 T C 678.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=29.51;SB=-2.920e+02;SOR=1.426;VQSLOD=5.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:707,57,0 2 133032580 rs192231100 A G 725.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=32.99;SB=-3.000e+02;SOR=1.329;VQSLOD=4.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:57:754,57,0 2 133032589 rs148570696 A G 635.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=30.27;SB=-2.710e+02;SOR=1.230;VQSLOD=5.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:51:664,51,0 2 133032597 rs144632610 C G 602.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=32.72;SB=-2.171e+02;SOR=1.371;VQSLOD=5.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:631,48,0 2 133032598 rs138582211 A C 539.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=31.75;SB=-2.151e+02;SOR=1.371;VQSLOD=5.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:568,48,0 2 133032605 rs74973723 A G 582.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=32.38;SB=-1.931e+02;SOR=1.493;VQSLOD=5.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:48:611,48,0 2 133032614 rs78511634 A C 602.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=33.49;SB=-2.151e+02;SOR=1.493;VQSLOD=5.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:48:631,48,0 2 133032623 rs80160257 A C 500.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=32.36;SB=-1.175e+02;SOR=2.303;VQSLOD=5.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:529,39,0 2 133032654 rs62163762 G A 412.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=34.40;SB=-7.497e+01;SOR=2.670;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:441,36,0 2 133033252 rs79504793 T C 256.80 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=23.35;SB=-3.876e+01;SOR=1.270;VQSLOD=3.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:21:285,21,0 2 133033254 rs76273957 T G 326.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=29.71;SB=-1.463e+02;SOR=1.270;VQSLOD=4.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:355,27,0 2 133033275 rs77861865 T C 256.80 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=25.68;SB=0.00;SOR=1.609;VQSLOD=3.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:11:21:285,21,0 2 133033279 . G GGGGTGGGGGTC 1492.73 PASS AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=26.74;SB=-5.703e+02;SOR=1.270;VQSLOD=4.79;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,11:11:33:1530,33,0 2 133033282 rs78779388 T A 286.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=26.07;SB=-1.443e+02;SOR=1.270;VQSLOD=2.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:315,24,0 2 133033302 rs72987836 A G 503.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=26.51;SB=-3.110e+02;SOR=1.022;VQSLOD=4.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:39:532,39,0 2 133033315 rs78501675 G A 443.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=27.74;SB=-2.680e+02;SOR=0.941;VQSLOD=4.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:36:472,36,0 2 133033319 rs80249606 A G 434.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=27.17;SB=-2.550e+02;SOR=0.941;VQSLOD=4.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:36:463,36,0 2 133033326 rs146736791 G C 463.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=28.99;SB=-3.030e+02;SOR=0.693;VQSLOD=4.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:36:492,36,0 2 133033331 rs370499786 T C 436.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=27.30;SB=-2.830e+02;SOR=0.693;VQSLOD=4.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:36:465,36,0 2 133033335 rs375671675 G C 455.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=30.38;SB=-2.890e+02;SOR=0.818;VQSLOD=5.70;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,15:15:36:484,36,0 2 133033346 rs62163774 T C 368.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=26.34;SB=-1.821e+02;SOR=0.976;VQSLOD=4.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:30:397,30,0 2 133033349 rs62163775 A C 419.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=29.98;SB=-1.941e+02;SOR=0.976;VQSLOD=4.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:33:448,33,0 2 133033368 rs62163776 C G 376.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=34.25;SB=-2.021e+02;SOR=0.859;VQSLOD=5.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:405,30,0 2 133033371 rs62163777 C T 363.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=33.07;SB=-1.991e+02;SOR=0.859;VQSLOD=4.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:392,30,0 2 133033410 rs62163778 T G 341.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=31.07;SB=-1.673e+02;SOR=1.270;VQSLOD=4.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:370,27,0 2 133033414 rs62163779 C G 327.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=29.80;SB=-1.483e+02;SOR=1.270;VQSLOD=3.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:356,27,0 2 133033416 rs62163785 T C 289.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=28.98;SB=-1.643e+02;SOR=1.085;VQSLOD=5.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:318,24,0 2 133033428 rs62163786 T C 266.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=26.68;SB=-8.297e+01;SOR=2.303;VQSLOD=5.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:295,24,0 2 133033445 rs74414029 A G 265.80 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=26.58;SB=-1.195e+02;SOR=1.609;VQSLOD=4.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:21:294,21,0 2 133033475 rs78547614 A G 261.80 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=26.18;SB=-1.453e+02;SOR=1.085;VQSLOD=4.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:21:290,21,0 2 133033515 rs73958507 G T 292.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=1;QD=29.28;SB=-8.197e+01;SOR=2.093;VQSLOD=3.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:321,24,0 2 133033517 rs73958508 T C 276.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=1;QD=27.68;SB=-8.097e+01;SOR=2.093;VQSLOD=3.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:305,24,0 2 133033520 rs111413680 C G 300.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=1;QD=30.08;SB=-8.297e+01;SOR=2.093;VQSLOD=4.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:329,24,0 2 133033524 rs75402234 T C 296.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=1;QD=29.68;SB=-8.297e+01;SOR=2.093;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:325,24,0 2 133033525 rs78377595 T C 236.80 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=1;QD=23.68;SB=-4.176e+01;SOR=2.093;VQSLOD=4.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:21:265,21,0 2 133033543 rs74778681 T C 242.80 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=1;QD=24.28;SB=-1.155e+02;SOR=1.402;VQSLOD=2.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:21:271,21,0 2 133033820 rs74787008 A G 177.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.609;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7247;MLEAC=1;MLEAF=0.500;MQ=45.79;MQ0=0;MQRankSum=-0.365;QD=16.16;ReadPosRankSum=1.434;SB=-1.020e+02;SOR=0.595;VQSLOD=1.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,7:11:68:206,0,68 2 133033851 rs77670704 A G 733.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=33.35;SB=-2.361e+02;SOR=1.329;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:57:762,57,0 2 133033861 rs76206743 T C 681.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=30.99;SB=-2.341e+02;SOR=1.329;VQSLOD=4.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:57:710,57,0 2 133033866 rs78501278 A G 794.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=31.79;SB=-2.810e+02;SOR=1.136;VQSLOD=5.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:66:823,66,0 2 133033873 rs76881758 C G 856.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=27.34;SB=-3.200e+02;SOR=1.270;VQSLOD=3.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:885,66,0 2 133033912 rs79793127 C G 567.82 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=54.15;MQ0=0;MQRankSum=-1.280;QD=28.39;ReadPosRankSum=1.200;SB=-2.294e+02;SOR=1.493;VQSLOD=1.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,18:20:19:596,0,19 2 133033933 rs111361724 A G 406.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=29.05;SB=-2.211e+02;SOR=0.976;VQSLOD=4.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:33:435,33,0 2 133033938 rs113487981 T C 366.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=28.21;SB=-2.391e+02;SOR=0.836;VQSLOD=4.63;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,13:13:30:395,30,0 2 133033945 rs112414132 A T 362.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=30.23;SB=-1.871e+02;SOR=1.022;VQSLOD=4.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:391,30,0 2 133033949 . T C 388.77 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=32.40;SB=-2.061e+02;SOR=1.022;VQSLOD=4.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:417,30,0 2 133033950 . G T 378.77 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=31.56;SB=-2.031e+02;SOR=1.022;VQSLOD=5.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:407,30,0 2 133033951 rs77287188 T C 347.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=28.98;SB=-1.653e+02;SOR=1.022;VQSLOD=5.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:376,27,0 2 133033968 rs75729544 T C 500.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=26.36;SB=-2.880e+02;SOR=1.292;VQSLOD=4.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:39:529,39,0 2 133033983 rs77431881 T A 525.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=26.29;SB=-2.740e+02;SOR=1.402;VQSLOD=3.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:39:554,39,0 2 133034014 rs112937225 T G 389.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=29.98;SB=-1.205e+02;SOR=2.147;VQSLOD=5.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:418,30,0 2 133034018 rs112652377 A G 375.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=28.91;SB=-1.115e+02;SOR=2.147;VQSLOD=5.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:404,30,0 2 133034025 rs7582384 T C 288.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.25;SB=-1.145e+02;SOR=1.802;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:317,24,0 2 133034030 rs141404422 T G 307.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=30.78;SB=-8.497e+01;SOR=2.303;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:336,24,0 2 133034031 rs146675194 CG C 392.74 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=28.93;SB=-8.997e+01;SOR=2.303;VQSLOD=3.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:430,30,0 2 133034033 rs148930188 T C 245.80 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=24.58;SB=-7.997e+01;SOR=2.303;VQSLOD=5.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:21:274,21,0 2 133034039 rs113345264 T C 282.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=28.28;SB=-8.297e+01;SOR=2.303;VQSLOD=5.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:311,24,0 2 133034200 rs36158413 A G 294.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=26.80;SB=-1.533e+02;SOR=1.270;VQSLOD=5.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:323,24,0 2 133034204 rs139329147 T C 301.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=27.43;SB=-1.483e+02;SOR=1.270;VQSLOD=4.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:330,24,0 2 133034212 rs75812324 A C 345.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=28.81;SB=-1.483e+02;SOR=1.445;VQSLOD=3.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:374,27,0 2 133034214 rs75629792 A C 373.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=28.75;SB=-1.383e+02;SOR=1.609;VQSLOD=5.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:402,30,0 2 133034232 rs75986417 T C 382.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=29.44;SB=-1.483e+02;SOR=1.609;VQSLOD=4.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:411,30,0 2 133034245 rs77208296 T C 436.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.69;SB=-2.880e+02;SOR=0.804;VQSLOD=4.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:33:465,33,0 2 133034255 rs75220162 G T 423.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=30.27;SB=-2.411e+02;SOR=0.976;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:33:452,33,0 2 133034265 rs78196596 T A 430.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=33.14;SB=-1.821e+02;SOR=1.179;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:459,36,0 2 133034272 rs77362682 T C 413.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=31.83;SB=-1.991e+02;SOR=1.179;VQSLOD=4.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:442,36,0 2 133034275 rs78222386 C G 502.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=33.52;SB=-2.441e+02;SOR=1.112;VQSLOD=4.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:531,39,0 2 133034288 rs79061961 T C 479.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=31.98;SB=-2.580e+02;SOR=0.818;VQSLOD=5.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:508,39,0 2 133034299 rs77725901 A G 492.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=1;QD=30.80;SB=-2.580e+02;SOR=0.818;VQSLOD=4.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:39:521,39,0 2 133034303 rs76020462 G A 472.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=1;QD=29.55;SB=-2.640e+02;SOR=0.818;VQSLOD=5.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:39:501,39,0 2 133034328 rs80095816 A G 344.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=1;QD=31.34;SB=-2.051e+02;SOR=0.693;VQSLOD=4.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:373,27,0 2 133034333 rs75104249 T G 342.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=1;QD=31.16;SB=-2.031e+02;SOR=0.693;VQSLOD=5.24;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,11:11:27:371,27,0 2 133034337 rs75310218 T C 338.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=1;QD=30.80;SB=-2.001e+02;SOR=0.693;VQSLOD=5.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:367,27,0 2 133034338 rs76321865 T C 334.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=1;QD=30.43;SB=-2.001e+02;SOR=0.693;VQSLOD=4.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:363,27,0 2 133034340 rs74601070 T C 316.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=1;QD=28.80;SB=-1.761e+02;SOR=0.693;VQSLOD=4.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:345,27,0 2 133034345 . G GC 391.74 PASS AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=30.66;SB=-2.081e+02;SOR=0.693;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:429,30,0 2 133034346 rs75558235 A C 333.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=1;QD=30.34;SB=-1.991e+02;SOR=0.693;VQSLOD=4.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:362,27,0 2 133034358 rs77321755 A C 381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=1;QD=31.81;SB=-2.051e+02;SOR=0.859;VQSLOD=4.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:410,30,0 2 133034361 rs78285768 C T 355.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=1;QD=27.37;SB=-1.781e+02;SOR=0.693;VQSLOD=3.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:384,30,0 2 133034372 rs76448997 T C 387.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=1;QD=29.83;SB=-2.461e+02;SOR=0.693;VQSLOD=4.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:416,30,0 2 133034373 rs80279330 G A 369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=1;QD=28.44;SB=-2.251e+02;SOR=0.693;VQSLOD=4.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:398,30,0 2 133034389 rs78050119 C G 257.80 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=1;QD=28.64;SB=-1.573e+02;SOR=0.693;VQSLOD=3.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,9:10:21:286,21,0 2 133034481 rs62163790 T C 314.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.48;SB=-1.195e+02;SOR=1.609;VQSLOD=5.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:343,27,0 2 133034697 rs79458802 G A 293.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.38;SB=-7.497e+01;SOR=2.303;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:322,24,0 2 133034700 rs62163793 A G 280.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.08;SB=-8.297e+01;SOR=2.303;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:309,24,0 2 133034703 rs76024319 T C 294.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.48;SB=-3.777e+01;SOR=2.303;VQSLOD=4.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:323,24,0 2 133034705 rs78138921 C T 284.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.48;SB=-7.997e+01;SOR=2.303;VQSLOD=5.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:313,24,0 2 133034729 rs62163794 C T 312.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.43;SB=-1.135e+02;SOR=1.802;VQSLOD=5.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:341,27,0 2 133034747 rs62163795 A G 343.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.44;SB=-1.185e+02;SOR=1.609;VQSLOD=4.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:27:372,27,0 2 133034781 . GAAA G 627.73 PASS AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=36.16;SB=-2.211e+02;SOR=1.022;VQSLOD=4.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:665,36,0 2 133034847 . A AACAG 845.73 PASS AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.73;MQ0=0;QD=26.31;SB=-2.713e+02;SOR=1.445;VQSLOD=4.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:883,36,0 2 133034855 . A G 308.10 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9287;MLEAC=1;MLEAF=0.500;MQ=60.73;MQ0=0;MQRankSum=0.223;QD=25.67;ReadPosRankSum=1.741;SB=-1.613e+02;SOR=0.495;VQSLOD=1.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:1,11:12:11:336,0,11 2 133034865 rs200215228 T C 317.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.80;MQ0=0;QD=28.89;SB=-1.583e+02;SOR=1.270;VQSLOD=5.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:346,27,0 2 133034873 . A G 334.78 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.88;MQ0=0;QD=33.48;SB=-1.115e+02;SOR=1.609;VQSLOD=5.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:363,27,0 2 133034885 rs113650391 T C 338.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.88;MQ0=0;QD=33.88;SB=-1.225e+02;SOR=1.609;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:367,27,0 2 133036029 rs73958512 T G 910.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=27.60;SB=-4.810e+02;SOR=1.022;VQSLOD=4.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:72:939,72,0 2 133036033 rs77362164 A G 875.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=27.37;SB=-4.870e+02;SOR=0.957;VQSLOD=4.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:69:904,69,0 2 133036041 rs75026118 A G 886.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=27.71;SB=-5.110e+02;SOR=0.957;VQSLOD=4.55;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,32:32:69:915,69,0 2 133036049 . T C 848.77 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=27.38;SB=-4.740e+02;SOR=1.044;VQSLOD=4.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:69:877,69,0 2 133036056 . T G 842.77 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=29.06;SB=-4.430e+02;SOR=1.071;VQSLOD=5.19;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,29:29:66:871,66,0 2 133036062 rs72873976 T C 331.78 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.70;SB=-2.560e+02;SOR=0.693;VQSLOD=3.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:27:360,27,0 2 133036067 . T C 288.78 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=24.07;SB=-1.851e+02;SOR=1.022;VQSLOD=3.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:24:317,24,0 2 133036069 . C G 288.78 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=26.25;SB=-1.483e+02;SOR=1.270;VQSLOD=3.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:317,24,0 2 133038150 rs79166427 A C 360.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.763;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7309;MLEAC=1;MLEAF=0.500;MQ=52.61;MQ0=0;MQRankSum=-1.173;QD=18.04;ReadPosRankSum=0.000;SB=-2.502e+02;SOR=0.914;VQSLOD=2.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,18:20:29:389,0,29 2 133038179 rs9677171 A C 474.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9989;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=24.99;SB=-2.191e+02;SOR=1.292;VQSLOD=3.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:39:503,39,0 2 133038225 rs112148265 T C 303.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.383;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9981;MLEAC=1;MLEAF=0.500;MQ=48.12;MQ0=0;MQRankSum=-1.827;QD=18.99;ReadPosRankSum=1.027;SB=-4.500e+01;SOR=2.093;VQSLOD=0.265;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,13:16:48:332,0,48 2 133039048 rs75574130 A G 321.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=24.75;SB=-8.097e+01;SOR=2.833;VQSLOD=4.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:27:350,27,0 2 133039061 rs80266636 A G 319.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=24.60;SB=-8.197e+01;SOR=2.833;VQSLOD=3.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:27:348,27,0 2 133039063 rs78592454 T C 349.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=26.91;SB=-7.497e+01;SOR=2.833;VQSLOD=5.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:27:378,27,0 2 133039074 . A G 327.78 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=23.41;SB=-1.245e+02;SOR=2.303;VQSLOD=3.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:27:356,27,0 2 133039075 . T C 386.77 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=25.78;SB=-1.205e+02;SOR=2.448;VQSLOD=4.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:30:415,30,0 2 133039087 . A G 379.77 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=21.10;SB=-2.031e+02;SOR=1.493;VQSLOD=2.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:30:408,30,0 2 133039090 rs79338524 T C 393.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=21.88;SB=-1.851e+02;SOR=1.493;VQSLOD=2.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:30:422,30,0 2 133039101 rs78718860 A G 379.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=22.34;SB=-2.061e+02;SOR=1.371;VQSLOD=2.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:30:408,30,0 2 133039105 rs76120830 T C 404.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=22.49;SB=-2.151e+02;SOR=1.179;VQSLOD=2.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:30:433,30,0 2 133039128 rs6752688 A G 364.78 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=21.46;SB=-2.890e+02;SOR=1.061;VQSLOD=2.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:27:393,27,0 2 133039132 . T C 367.78 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=21.63;SB=-2.750e+02;SOR=1.061;VQSLOD=2.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:27:396,27,0 2 133039135 . G T 317.78 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.13;MQ0=0;MQRankSum=1.005;QD=19.86;ReadPosRankSum=1.739;SB=-2.091e+02;SOR=0.412;VQSLOD=2.01;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,15:16:27:346,27,0 2 133039137 . A G 359.78 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.13;MQ0=0;QD=22.49;SB=-2.511e+02;SOR=1.244;VQSLOD=2.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:27:388,27,0 2 133039156 rs80158271 T C 371.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=0;QD=23.24;SB=-1.603e+02;SOR=2.049;VQSLOD=3.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:30:400,30,0 2 133039166 rs113604015 T C 389.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=0;QD=24.36;SB=-1.613e+02;SOR=2.049;VQSLOD=2.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:30:418,30,0 2 133039171 rs190886293 C G 392.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=0;QD=26.18;SB=-1.085e+02;SOR=2.448;VQSLOD=4.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:30:421,30,0 2 133039176 rs113308206 A G 377.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=26.98;SB=-7.497e+01;SOR=2.985;VQSLOD=5.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:30:406,30,0 2 133066879 rs2677610 G A 618.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.979;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=-0.526;QD=22.92;ReadPosRankSum=-1.230;SB=-3.590e+02;SOR=0.963;VQSLOD=2.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,23:28:62:647,0,62 2 133070245 rs2459645 A G 673.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.839;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.73;ReadPosRankSum=-0.539;SB=-2.940e+02;SOR=0.544;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 0/1:13,25:38:99:702,0,284 2 133070318 rs2459646 A C 911.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.718;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.064;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.58;ReadPosRankSum=0.301;SB=-5.660e+02;SOR=0.452;VQSLOD=8.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,33:55:99:940,0,513 2 133070449 rs2459647 T C 503.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.679;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=8.042;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.26;ReadPosRankSum=-1.525;SB=-1.260e+02;SOR=2.189;VQSLOD=4.25;culprit=FS GT:AD:DP:GQ:PL 0/1:15,23:38:99:532,0,397 2 133070508 rs7340197 G T 316.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.251;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.20;ReadPosRankSum=1.328;SB=-5.700e+01;SOR=1.148;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 0/1:12,12:24:99:345,0,323 2 133070531 . C T 252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.543;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.30;ReadPosRankSum=-1.061;SB=-6.300e+01;SOR=1.371;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:281,0,196 2 133070556 . T C 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.282;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.90;ReadPosRankSum=-2.257;SB=-9.732e-01;SOR=2.303;VQSLOD=3.86;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,5:12:99:171,0,179 2 133074683 . T C 567.77 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=29.88;SB=-2.570e+02;SOR=1.022;VQSLOD=5.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:45:596,45,0 2 133074718 rs4953961 A C 665.84 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.367;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.764;QD=26.63;ReadPosRankSum=1.457;SB=-4.270e+02;SOR=0.223;VQSLOD=1.35;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,24:25:18:694,18,0 2 133075207 rs7349365 C T 1136.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-0.740;SB=-6.350e+02;SOR=0.731;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 0/1:71,44:115:99:1165,0,1847 2 133075365 rs7349215 G A 1471.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.568;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=-1.810;QD=14.72;ReadPosRankSum=0.880;SB=-7.270e+02;SOR=0.866;VQSLOD=0.714;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,48:100:99:1500,0,1385 2 133075386 . G A 1817.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.131;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.718;HaplotypeScore=1.9318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.09;ReadPosRankSum=0.751;SB=-7.780e+02;SOR=0.831;VQSLOD=6.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,60:113:99:1846,0,1512 2 133075409 rs7349448 T C 1850.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.958;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=1.477;HaplotypeScore=3.4596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.05;ReadPosRankSum=0.986;SB=-7.140e+02;SOR=0.892;VQSLOD=6.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,65:123:99:1879,0,1590 2 133075726 rs2598810 A G 702.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=-1.628;QD=9.90;ReadPosRankSum=-1.086;SB=-3.750e+02;SOR=0.625;VQSLOD=1.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,26:71:99:731,0,1380 2 133076032 rs2598809 T G 945.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.873;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.197;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.25;ReadPosRankSum=1.106;SB=-4.590e+02;SOR=0.400;VQSLOD=8.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,30:62:99:974,0,1043 2 133076048 rs2598808 A G 718.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.007;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.61;ReadPosRankSum=1.607;SB=-3.990e+02;SOR=0.656;VQSLOD=5.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,27:57:99:747,0,973 2 133076117 rs111405036 CA C 1115.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;DB;DP=61;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.60;RPA=2,1;RU=A;ReadPosRankSum=0.791;SB=-5.100e+02;SOR=0.976;STR;VQSLOD=4.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,30:61:99:1153,0,1166 2 133076155 rs2677622 G A 943.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.863;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=3.248;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.29;ReadPosRankSum=0.926;SB=-5.080e+02;SOR=0.649;VQSLOD=3.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,35:71:99:972,0,889 2 133076206 rs2598807 C T 882.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.496;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.371;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.61;ReadPosRankSum=-0.873;SB=-5.240e+02;SOR=0.350;VQSLOD=8.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,38:70:99:911,0,759 2 133076221 rs7340213 G A 801.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=9.110;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.93;ReadPosRankSum=-1.172;SB=-5.540e+02;SOR=0.183;VQSLOD=4.41;culprit=FS GT:AD:DP:GQ:PL 0/1:27,35:62:99:830,0,701 2 133076229 rs2598806 A G 784.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.254;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=5.580;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.08;ReadPosRankSum=-0.149;SB=-5.090e+02;SOR=0.230;VQSLOD=8.17;culprit=FS GT:AD:DP:GQ:PL 0/1:27,33:60:99:813,0,702 2 133076311 rs7340138 T C 403.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.244;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.19;ReadPosRankSum=1.816;SB=-8.197e+01;SOR=0.324;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 0/1:6,14:20:99:432,0,176 2 133095159 rs2443258 A G 342.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.411;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=53.48;MQ0=0;MQRankSum=-4.969;QD=11.06;ReadPosRankSum=-0.020;SB=-1.765e+00;SOR=1.055;VQSLOD=0.998;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,12:31:99:371,0,626 2 133095185 rs2459680 A C 246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.417;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7552;MLEAC=1;MLEAF=0.500;MQ=53.52;MQ0=0;MQRankSum=-4.126;QD=10.73;ReadPosRankSum=0.347;SB=0.00;SOR=0.368;VQSLOD=1.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,9:23:99:275,0,469 2 133174764 rs2241764 C T 2977.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-11.539;DB;DP=222;Dels=0.00;ExcessHet=3.0103;FS=3.784;HaplotypeScore=6.4765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-0.688;SB=-1.571e+03;SOR=0.951;VQSLOD=6.57;culprit=DP GT:AD:DP:GQ:PL 0/1:106,116:222:99:3006,0,2744 2 133174999 rs2241763 A G 2489.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;DB;DP=202;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-0.022;SB=-1.323e+03;SOR=0.746;VQSLOD=6.92;culprit=DP GT:AD:DP:GQ:PL 0/1:105,97:202:99:2518,0,2843 2 133175524 rs34879126 G A 415.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.521;HaplotypeScore=2.8112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=-0.416;SB=-3.070e+02;SOR=0.368;VQSLOD=9.16;culprit=QD GT:AD:DP:GQ:PL 0/1:27,21:48:99:444,0,812 2 133403433 rs10179785 G A 69.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.34;ReadPosRankSum=0.179;SB=-3.500e+01;SOR=0.283;VQSLOD=9.33;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:98:98,0,225 2 133425786 rs140741 TTAACTC T 373.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=-0.888;SB=0.00;SOR=0.551;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:411,0,511 2 133425912 rs2709533 C T 1023.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.448;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.902;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-1.234;SB=-3.580e+02;SOR=0.821;VQSLOD=7.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,39:81:99:1052,0,1166 2 133426183 rs2709532 G C 554.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.252;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=9.887;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.81;ReadPosRankSum=2.018;SB=-5.150e-01;SOR=3.312;VQSLOD=4.77;culprit=FS GT:AD:DP:GQ:PL 0/1:16,17:33:99:583,0,469 2 133539460 rs6717116 A T 84.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.672;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.99;ReadPosRankSum=1.134;SB=-9.732e-01;SOR=0.941;VQSLOD=8.50;culprit=QD GT:AD:DP:GQ:PL 0/1:13,4:17:99:113,0,381 2 133539566 rs6730282 G A 407.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.624;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.32;ReadPosRankSum=-0.585;SB=-2.480e+02;SOR=0.869;VQSLOD=9.23;culprit=QD GT:AD:DP:GQ:PL 0/1:30,19:49:99:436,0,690 2 133540176 rs2278752 A G 1247.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.565;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=3.161;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.20;ReadPosRankSum=0.843;SB=-7.520e+02;SOR=0.349;VQSLOD=10.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,45:77:99:1276,0,836 2 133541444 rs12691829 T C 2339.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.62;SB=-1.187e+03;SOR=1.207;VQSLOD=4.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:80:99:2368,181,0 2 133541454 rs12691830 A G 2412.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-1.272e+03;SOR=1.068;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2441,178,0 2 133541575 rs12611515 C T 1171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.062;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=-0.694;SB=-6.080e+02;SOR=0.834;VQSLOD=6.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,42:67:99:1200,0,624 2 133542014 rs12616282 T C 3441.77 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.29;SB=-1.684e+03;SOR=1.069;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,110:110:99:3470,256,0 2 133542545 rs10191147 G A 1733.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.113;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=11.195;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=1.442;SB=-5.200e+02;SOR=1.609;VQSLOD=4.24;culprit=FS GT:AD:DP:GQ:PL 0/1:79,61:140:99:1762,0,2024 2 133554054 rs4953993 A T 265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.15;ReadPosRankSum=0.611;SB=0.00;SOR=1.981;VQSLOD=8.53;culprit=FS GT:AD:DP:GQ:PL 0/1:3,9:12:81:294,0,81 2 133554288 rs1868076 A G 1455.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.047;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=5.582;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.97;ReadPosRankSum=0.959;SB=-4.180e+02;SOR=2.015;VQSLOD=5.54;culprit=FS GT:AD:DP:GQ:PL 1/1:1,46:47:75:1484,75,0 2 133618220 rs1447549 A G 754.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.024;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.061;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=-1.968;SB=-1.120e+02;SOR=0.312;VQSLOD=9.75;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:19,25:44:99:783,0,597 2 133618246 rs16842652 A G 423.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.440;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=-0.194;SB=0.00;SOR=0.627;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:14,13:27:99:452,0,472 2 133626706 rs17326258 T C 251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.044;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=1.294;SB=0.00;SOR=1.179;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:280,0,142 2 133636186 . TACACACACAC T 854.74 PASS AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.64;RPA=21,16;RU=AC;SB=0.00;SOR=4.804;STR;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:892,30,0 2 133683658 rs2577634 G T 624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.40;SB=-4.190e+02;SOR=0.693;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:48:653,48,0 2 133971448 rs13393624 T A 983.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.284;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.804;HaplotypeScore=5.1310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.19;ReadPosRankSum=1.154;SB=-3.910e+02;SOR=0.588;VQSLOD=8.55;culprit=QD GT:AD:DP:GQ:PL 0/1:64,43:107:99:1012,0,1711 2 134884700 rs6430498 G A 520.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.493;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-0.248;SB=-2.900e+02;SOR=0.451;VQSLOD=9.88;culprit=FS GT:AD:DP:GQ:PL 0/1:20,21:41:99:549,0,480 2 135075378 rs3791280 G A 197.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.020;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=0.078;SB=-4.176e+01;SOR=0.293;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:226,0,166 2 135076090 rs4954133 C T 612.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.99;SB=0.00;SOR=5.670;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:641,48,0 2 135076111 rs4954134 C G 673.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.06;SB=0.00;SOR=5.892;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:702,54,0 2 135096097 rs7598410 T C 874.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.72;SB=-4.176e+01;SOR=4.977;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:69:903,69,0 2 135102453 rs3214771 TA T 114.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.04;RPA=3,2;RU=A;ReadPosRankSum=-0.556;SB=-9.732e-01;SOR=1.071;STR;VQSLOD=8.43;culprit=QD GT:AD:DP:GQ:PL 0/1:14,5:19:99:152,0,461 2 135102742 rs2290048 A G 326.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.852;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.246;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=1.015;SB=-1.120e+02;SOR=0.223;VQSLOD=9.53;culprit=SOR GT:AD:DP:GQ:PL 0/1:11,13:24:99:355,0,334 2 135160755 rs3748900 G A 2804.77 PASS AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.16;SB=-1.523e+03;SOR=0.901;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:93:99:2833,214,0 2 135180526 rs2289466 A G 774.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.888;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.530;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=0.509;SB=-1.040e+02;SOR=1.051;VQSLOD=7.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,26:51:99:803,0,727 2 135223497 rs2289471 C A 106.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.63;ReadPosRankSum=-0.434;SB=-6.800e+01;SOR=0.412;VQSLOD=9.65;culprit=QD GT:AD:DP:GQ:PL 0/1:8,6:14:99:135,0,258 2 135308431 rs59357769 A G 495.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.00;SB=-4.276e+01;SOR=3.912;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:524,39,0 2 135602601 rs6430545 T A 1877.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.14;SB=-3.870e+02;SOR=2.917;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1906,144,0 2 135629907 rs79434847 T C 1098.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-4.930e+02;SOR=1.609;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:38:81:1127,81,0 2 135629927 rs12469941 C T 1253.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7236;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-5.460e+02;SOR=1.387;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:96:1282,96,0 2 135655719 . G GA 244.74 PASS AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;QD=24.47;RPA=9,10;RU=A;SB=0.00;SOR=4.804;STR;VQSLOD=4.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:282,30,0 2 135677268 rs3769024 G A 1200.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.29;SB=-6.500e+02;SOR=1.364;VQSLOD=5.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:90:1229,90,0 2 135677471 rs67897534 A AGTTT 1488.73 PASS AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.42;SB=-2.065e+02;SOR=3.352;VQSLOD=5.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:24:69:1526,69,0 2 135694354 rs1823118 G C 507.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.39;SB=-2.061e+02;SOR=2.093;VQSLOD=4.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:39:536,39,0 2 135694379 rs1374289 C T 697.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.72;SB=-2.401e+02;SOR=1.931;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:54:726,54,0 2 135700151 rs3816339 A T 2920.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.92;SB=-1.446e+03;SOR=1.368;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:2949,220,0 2 135703338 rs57267734 CT C 2416.73 PASS AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=26.56;RPA=10,9;RU=T;SB=-5.710e+02;SOR=2.435;STR;VQSLOD=4.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:92:99:2454,272,0 2 135705558 rs1979033 G A 1048.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.96;SB=-2.391e+02;SOR=2.621;VQSLOD=5.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:81:1077,81,0 2 135710322 rs10166142 A G 1399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.57;SB=-9.220e+02;SOR=0.733;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1428,102,0 2 135711516 rs3814355 C T 1548.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SB=-7.160e+02;SOR=1.201;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1577,120,0 2 135711657 rs3814354 G A 3323.77 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.01;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.96;SB=-1.700e+03;SOR=1.094;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3352,250,0 2 135740863 rs79960383 C A 1869.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.77;SB=-9.920e+02;SOR=1.162;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:1898,138,0 2 135741061 rs12623713 G A 827.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.11;SB=-2.740e+02;SOR=1.893;VQSLOD=7.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:63:856,63,0 2 135741425 rs16831223 C A 1175.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.13;SB=-7.080e+02;SOR=1.154;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:87:1204,87,0 2 135744007 rs3905317 T C 3774.77 PASS AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-2.082e+03;SOR=0.856;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,117:117:99:3803,280,0 2 135744416 rs1112542 C G 2482.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-1.258e+03;SOR=1.179;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2511,181,0 2 135745545 rs11899779 C T 1703.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.41;SB=-5.810e+02;SOR=1.848;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1732,135,0 2 135745722 rs10928526 A G 2857.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.40;SB=-1.336e+03;SOR=1.321;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:2886,208,0 2 135748872 . A AAAAAC 920.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.493;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.56;RPA=7,8;RU=AAAAC;ReadPosRankSum=1.761;SB=-4.600e+01;SOR=1.047;STR;VQSLOD=7.67;culprit=FS GT:AD:DP:GQ:PL 0/1:27,17:45:99:958,0,1493 2 135762980 rs7606415 C T 1235.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.557;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-0.058;SB=-5.240e+02;SOR=0.671;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:44,49:93:99:1264,0,1123 2 135893372 rs10445686 A G 1135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.178;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=3.740;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=1.001;SB=-5.360e+02;SOR=0.358;VQSLOD=9.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,41:64:99:1164,0,644 2 135911422 rs17261772 T C 2057.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-9.300e+02;SOR=1.473;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2086,160,0 2 136148394 rs201179629 GAA G 130.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;DB;DP=17;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.34;RPA=19,17;RU=A;ReadPosRankSum=0.433;SB=-1.321e+01;SOR=1.402;STR;VQSLOD=5.35;culprit=QD GT:AD:DP:GQ:PL 0/1:7,7:17:99:168,0,133 2 136393658 rs961360 A G 1618.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-7.930e+02;SOR=1.244;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1647,120,0 2 136396300 rs2278731 T C 1282.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.18;SB=-7.030e+02;SOR=1.225;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:93:1311,93,0 2 136407445 rs1446586 A G 1476.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.40;SB=-5.240e+02;SOR=2.215;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1505,117,0 2 136407479 rs1446585 A G 2150.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-8.330e+02;SOR=1.885;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2179,169,0 2 136467119 rs2304366 C T 1011.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-2.001e+02;SOR=3.126;VQSLOD=7.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:81:1040,81,0 2 136467164 rs2304367 C A 401.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.70;SB=-7.997e+01;SOR=2.985;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:33:430,33,0 2 136511817 rs1050115 A G 2345.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.32;SB=-1.138e+03;SOR=1.310;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2374,169,0 2 136548192 rs1808756 G A 403.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.06;SB=-7.597e+01;SOR=2.833;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:432,33,0 2 136552188 rs3213890 G A 1385.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SB=-6.410e+02;SOR=1.562;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1414,102,0 2 136552371 rs3213891 A G 2119.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.28;SB=-8.850e+02;SOR=1.418;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2148,160,0 2 136555525 rs2015532 T G 3095.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.43;SB=-8.330e+02;SOR=2.356;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:3124,226,0 2 136561735 rs2304370 G A 893.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=0.00;SOR=6.518;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:75:922,75,0 2 136565028 rs10928549 C G 1499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=-1.673e+02;SOR=4.073;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1528,111,0 2 136575534 rs4954449 T C 2285.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=-1.414e+03;SOR=0.776;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2314,166,0 2 136575748 rs78427873 A C 285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.791;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=0.861;SB=-1.640e+02;SOR=0.502;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:18,13:31:99:314,0,503 2 136590746 rs3754689 C T 1673.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-8.500e+02;SOR=1.061;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1702,129,0 2 136622825 rs309177 A G 619.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2177;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.62;SB=-1.641e+02;SOR=1.981;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:20:51:648,51,0 2 136626078 rs3769001 A G 413.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=0.00;SOR=5.136;VQSLOD=8.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:442,36,0 2 136628121 rs4988163 G T 409.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.15;SB=-3.677e+01;SOR=3.611;VQSLOD=8.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:438,33,0 2 136633771 rs191079 T C 770.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.79;SB=-6.897e+01;SOR=3.912;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:799,60,0 2 136633962 rs1057031 G A 1506.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.14;SB=-5.950e+02;SOR=1.519;VQSLOD=5.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1535,117,0 2 136674028 rs309172 A G 1028.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=0.00;SOR=6.736;VQSLOD=8.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:29:81:1057,81,0 2 136680534 rs309158 A G 2234.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.95;SB=-3.190e+02;SOR=3.647;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2263,166,0 2 136690414 rs34744196 TA T 1202.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.114;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;MQRankSum=0.309;POSITIVE_TRAIN_SITE;QD=24.55;RPA=15,14;RU=A;ReadPosRankSum=-1.380;SB=-2.840e+02;SOR=1.255;STR;VQSLOD=3.35;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,48:63:99:1240,141,0 2 136719173 rs6430594 A G 704.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.89;SB=-4.276e+01;SOR=4.514;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:733,54,0 2 136740900 rs687670 T C 556.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;SB=-2.091e+02;SOR=1.863;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:42:585,42,0 2 136743143 rs2278682 G C 1393.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9025;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;SB=-6.530e+02;SOR=1.464;VQSLOD=4.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:47:99:1422,108,0 2 136957352 rs116238221 C G 62.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.702;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.18;ReadPosRankSum=1.517;SB=-2.402e+01;SOR=0.818;VQSLOD=8.42;culprit=QD GT:AD:DP:GQ:PL 0/1:12,3:15:91:91,0,287 2 137086987 rs60016855 C A 969.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.847;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.889;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=0.164;SB=-6.190e+02;SOR=0.583;VQSLOD=9.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,43:74:99:998,0,779 2 137087324 rs13003740 A G 526.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.220;SB=-2.760e+02;SOR=0.862;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:17,21:38:99:555,0,410 2 137639616 rs1465612 C T 481.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.41;SB=-4.076e+01;SOR=3.912;VQSLOD=7.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:510,39,0 2 137640006 rs11298935 CT C 485.73 PASS AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.56;RPA=8,7;RU=T;SB=-3.077e+01;SOR=4.514;STR;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:22:57:523,57,0 2 137999979 rs10490735 G C 537.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.214;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=4.506;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=-0.885;SB=-1.030e+02;SOR=1.595;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 0/1:33,22:55:99:566,0,761 2 138000226 rs7605259 T C 1228.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.4311;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-3.240e+02;SOR=2.726;VQSLOD=4.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1257,99,0 2 138030271 rs10182152 G A 1694.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=-3.430e+02;SOR=2.480;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1723,129,0 2 138033412 rs72617060 T A 920.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.714;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=12.824;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=1.329;SB=-8.400e+01;SOR=2.621;VQSLOD=4.92;culprit=FS GT:AD:DP:GQ:PL 0/1:29,32:61:99:949,0,728 2 138033428 rs67227746 G A 1011.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.661;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=13.764;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=1.278;SB=-1.060e+02;SOR=2.531;VQSLOD=4.77;culprit=FS GT:AD:DP:GQ:PL 0/1:34,37:71:99:1040,0,947 2 138163391 rs1551281 T C 793.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.097;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.513;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=1.698;SB=-1.000e+02;SOR=1.179;VQSLOD=7.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,26:54:99:822,0,756 2 138169158 rs1463285 T C 1384.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.62;SB=-3.700e+02;SOR=2.419;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1413,105,0 2 138208631 rs1453302 G T 888.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.893;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.413;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=-0.882;SB=-6.400e+01;SOR=0.196;VQSLOD=7.78;culprit=SOR GT:AD:DP:GQ:PL 0/1:43,31:74:99:917,0,1422 2 138237038 rs1584435 C T 1248.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=-1.603e+02;SOR=3.675;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:96:1277,96,0 2 138295924 rs1023829 C T 262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.702;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-0.835;SB=0.00;SOR=0.412;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:13,9:22:99:291,0,396 2 138375896 rs7574994 G A 2310.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.231;DB;DP=204;Dels=0.00;ExcessHet=3.0103;FS=6.091;HaplotypeScore=1.8910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-0.148;SB=-9.850e+02;SOR=1.091;VQSLOD=5.77;culprit=DP GT:AD:DP:GQ:PL 0/1:106,98:204:99:2339,0,2802 2 138376210 rs16839162 G A 722.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.761;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.043;SB=-1.610e+02;SOR=0.714;VQSLOD=10.02;culprit=FS GT:AD:DP:GQ:PL 0/1:29,25:54:99:751,0,832 2 138376301 . T TA 91.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.17;RPA=6,7;RU=A;ReadPosRankSum=-0.700;SB=-1.769e+00;SOR=1.911;STR;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:12:99:129,0,115 2 138378351 rs58339575 AG A 1101.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.029;DB;DP=63;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.77;ReadPosRankSum=0.388;SB=-2.520e+02;SOR=0.408;VQSLOD=9.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,29:63:99:1139,0,1371 2 138378388 rs1448922 A G 681.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.192;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=-0.196;SB=-1.730e+02;SOR=0.479;VQSLOD=10.36;culprit=FS GT:AD:DP:GQ:PL 0/1:19,24:43:99:710,0,504 2 138378463 rs2100049 G A 244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.40;ReadPosRankSum=0.738;SB=0.00;SOR=1.445;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:88:273,0,88 2 138721942 . AT A 168.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DP=23;ExcessHet=3.0103;FS=3.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.67;RPA=17,16;RU=T;ReadPosRankSum=0.871;SB=-1.770e+00;SOR=2.368;STR;VQSLOD=5.60;culprit=QD GT:AD:DP:GQ:PL 0/1:9,13:23:99:206,0,174 2 138727607 rs3100702 G A 284.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.91;ReadPosRankSum=2.034;SB=0.00;SOR=1.609;VQSLOD=8.98;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,9:13:99:313,0,114 2 138762873 . C CTT 961.73 PASS AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=63.51;MQ0=0;QD=29.10;RPA=2,4;RU=T;SB=-1.245e+02;SOR=3.352;STR;VQSLOD=1.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:24:69:999,69,0 2 138771219 rs12475006 G A 1129.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.33;SB=0.00;SOR=6.932;VQSLOD=7.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:93:1158,93,0 2 138771760 rs1050891 A G 409.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.12;SB=0.00;SOR=4.977;VQSLOD=8.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:438,33,0 2 139036688 rs6757587 C G 839.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.24;SB=-5.570e+02;SOR=0.957;VQSLOD=5.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:63:868,63,0 2 139036797 rs6728323 G A 450.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.67;SB=-1.991e+02;SOR=1.179;VQSLOD=4.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:14:36:479,36,0 2 139045855 rs35998722 C T 1175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=2.843;HaplotypeScore=2.8767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=0.420;SB=-4.520e+02;SOR=1.096;VQSLOD=7.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,43:93:99:1204,0,1350 2 139045929 rs13033464 C T 889.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.378;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=5.680;HaplotypeScore=4.4557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=-1.086;SB=-5.330e+02;SOR=0.395;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 0/1:48,37:85:99:918,0,1358 2 139045972 rs6733578 T C 2627.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;SB=-1.558e+03;SOR=0.917;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:88:99:2656,190,0 2 139045987 rs13033503 C T 844.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.688;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=0.730;SB=-4.970e+02;SOR=0.667;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 0/1:50,37:87:99:873,0,1356 2 139046301 rs12691943 A G 4005.77 PASS AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.82;SB=-2.606e+03;SOR=0.904;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,144:144:99:4034,295,0 2 139046385 rs13382964 G A 3369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8399;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.49;SB=-1.050e+03;SOR=2.237;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,107:108:99:3398,253,0 2 139308397 . T TTCTCTC 1804.73 PASS AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;QD=31.82;RPA=11,14;RU=TC;SB=-6.530e+02;SOR=1.426;STR;VQSLOD=4.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:26:69:1842,69,0 2 139429068 rs10803570 G A 2181.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;DB;DP=191;Dels=0.00;ExcessHet=3.0103;FS=0.533;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=2.304;SB=-1.253e+03;SOR=0.784;VQSLOD=6.87;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:101,90:191:99:2210,0,2440 2 140992337 rs13387241 C A 3077.77 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7044;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.98;SB=-1.811e+03;SOR=1.118;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,110:110:99:3106,226,0 2 140997197 rs3748864 T G 417.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=1.013;SB=-3.876e+01;SOR=0.330;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:11,15:26:99:446,0,358 2 141004513 rs11895946 C T 552.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.66;SB=0.00;SOR=5.549;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:581,45,0 2 141004529 rs2129483 A G 662.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.14;SB=0.00;SOR=6.091;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:57:691,57,0 2 141027926 rs3748865 A G 809.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.111;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=0.178;SB=-2.030e+02;SOR=0.420;VQSLOD=9.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,33:76:99:838,0,1245 2 141032088 rs1386356 C T 2459.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-1.388e+03;SOR=0.824;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2488,187,0 2 141032220 rs76176617 C T 363.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.505;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=0.403;SB=-9.900e+01;SOR=0.507;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:23,15:38:99:392,0,703 2 141113798 rs13017246 G A 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-1.221;SB=-1.765e+00;SOR=1.911;VQSLOD=8.71;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:171,0,142 2 141201763 rs4992954 T C 351.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.60;SB=0.00;SOR=4.804;VQSLOD=7.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:380,30,0 2 141202412 rs2380793 C T 223.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.087;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-0.232;SB=0.00;SOR=0.392;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:12,8:20:99:252,0,422 2 141260668 rs4444457 A G 735.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.455;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-0.108;SB=-2.580e+02;SOR=0.741;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 0/1:38,29:67:99:764,0,1029 2 141267744 rs1948051 T C 744.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.85;SB=-8.297e+01;SOR=3.912;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:63:773,63,0 2 141272057 rs6430906 T A 362.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;SB=0.00;SOR=4.804;VQSLOD=8.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:391,30,0 2 141274576 rs4954672 T C 2969.77 PASS AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=-1.117e+03;SOR=1.821;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:93:99:2998,214,0 2 141283603 rs1352047 T G 1329.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.10;SB=-2.381e+02;SOR=3.202;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1358,99,0 2 141284041 rs7562323 A G 457.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=-8.497e+01;SOR=2.985;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:486,36,0 2 141298467 rs6729619 A C 444.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=0.000;SB=-7.101e+01;SOR=0.627;VQSLOD=10.16;culprit=FS GT:AD:DP:GQ:PL 0/1:10,15:25:99:473,0,283 2 141298674 rs13013854 T C 867.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.411;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.920;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=1.335;SB=-4.050e+02;SOR=1.015;VQSLOD=7.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,34:74:99:896,0,877 2 141298682 rs11694934 G C 760.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.684;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=1.588;SB=-3.690e+02;SOR=0.804;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 0/1:38,30:68:99:789,0,957 2 141298749 rs11694970 G C 366.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=-1.675;SB=-3.500e+01;SOR=0.460;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:17,13:30:99:395,0,540 2 141299317 rs9287535 A G 585.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.379;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=1.496;SB=-9.800e+01;SOR=0.593;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 0/1:28,20:48:99:614,0,868 2 141344200 rs56148568 T C 3284.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;SB=-1.710e+03;SOR=1.072;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:3313,238,0 2 141358876 rs34284556 TA T 157.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQ0=0;MQRankSum=0.464;POSITIVE_TRAIN_SITE;QD=11.27;RPA=10,9;RU=A;ReadPosRankSum=0.193;SB=0.00;SOR=1.329;STR;VQSLOD=3.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,9:14:99:195,0,100 2 141359287 rs1441465 C T 368.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.487;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=0.211;SB=0.00;SOR=1.739;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 0/1:5,12:17:99:397,0,151 2 141441072 rs1966748 C T 371.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=-1.513e+02;SOR=1.445;VQSLOD=4.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:400,30,0 2 141441298 rs10208923 G A 266.80 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.68;SB=-1.603e+02;SOR=1.085;VQSLOD=5.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:21:295,21,0 2 141458273 rs78366782 T G 232.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=0.267;SB=-1.765e+00;SOR=0.512;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:11,9:20:99:261,0,326 2 141473505 rs4954852 A T 406.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.907;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=5.301;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-1.670;SB=-8.700e+01;SOR=1.680;VQSLOD=5.77;culprit=FS GT:AD:DP:GQ:PL 0/1:21,15:36:99:435,0,542 2 141474402 . G GA 279.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;DP=26;ExcessHet=3.0103;FS=2.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;RPA=8,9;RU=A;ReadPosRankSum=2.148;SB=-6.297e+01;SOR=0.172;STR;VQSLOD=9.16;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,14:26:99:317,0,180 2 141474456 rs1372255 C T 345.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=0.00;SOR=4.804;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:374,30,0 2 141527013 rs13002947 A G 1496.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=-2.451e+02;SOR=3.209;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1525,114,0 2 141528435 rs13382825 T C 1190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.077;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=3.163;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-0.869;SB=-2.960e+02;SOR=1.115;VQSLOD=7.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,40:93:99:1219,0,1422 2 141528592 rs7599219 T C 3039.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-1.187e+03;SOR=1.808;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,99:100:99:3068,241,0 2 141533573 rs13009144 A G 364.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.782;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.37;ReadPosRankSum=0.071;SB=0.00;SOR=0.990;VQSLOD=10.28;culprit=FS GT:AD:DP:GQ:PL 0/1:9,12:21:99:393,0,239 2 141533662 rs996361 T C 1583.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.00;SB=-4.050e+02;SOR=2.608;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1612,120,0 2 141571329 rs3749010 T C 3079.77 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.33;SB=-1.898e+03;SOR=0.833;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:105:99:3108,235,0 2 141598473 rs61163231 A AT 3939.73 PASS AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.76;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.57;SB=-1.500e+03;SOR=1.275;VQSLOD=5.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:85:99:3977,253,0 2 141607972 rs140906089 CTTGAT C 880.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQ0=0;MQRankSum=1.041;POSITIVE_TRAIN_SITE;QD=21.14;ReadPosRankSum=0.544;SB=0.00;SOR=0.770;VQSLOD=3.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,13:26:99:918,0,873 2 141641717 rs16844912 C T 227.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.52;ReadPosRankSum=0.141;SB=-3.976e+01;SOR=0.368;VQSLOD=10.04;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:256,0,167 2 141707711 rs113914598 TTC T 192.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=0.552;SB=0.00;SOR=0.569;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:230,0,299 2 141707868 rs6748626 G T 698.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.128;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=3.514;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=-0.642;SB=-4.020e+02;SOR=0.711;VQSLOD=5.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,29:62:99:727,0,952 2 141708021 rs6706503 T A 253.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.68;ReadPosRankSum=0.077;SB=-1.270e+02;SOR=0.536;VQSLOD=9.11;culprit=QD GT:AD:DP:GQ:PL 0/1:25,13:38:99:282,0,712 2 141709406 rs1991540 T G 953.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.491;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=2.433;HaplotypeScore=3.4296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.15;ReadPosRankSum=0.549;SB=-7.260e+02;SOR=0.490;VQSLOD=8.81;culprit=QD GT:AD:DP:GQ:PL 0/1:72,45:117:99:982,0,1807 2 141747249 rs1429365 A T 2349.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.092;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=5.119;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.37;ReadPosRankSum=1.213;SB=-8.060e+02;SOR=1.773;VQSLOD=4.82;culprit=FS GT:AD:DP:GQ:PL 1/1:1,79:80:99:2378,144,0 2 141747293 rs1429366 T C 1615.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.27;SB=-2.800e+02;SOR=3.209;VQSLOD=7.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1644,120,0 2 141751592 rs13007735 G A 1024.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.70;SB=-6.210e+02;SOR=0.984;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:75:1053,75,0 2 141816621 rs1525579 A G 714.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-2.041e+02;SOR=2.303;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:23:54:743,54,0 2 141945949 rs1249434 C T 1224.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.10;SB=-1.951e+02;SOR=3.442;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:96:1253,96,0 2 142567737 rs4996425 G A 210.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.955;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.623;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.11;ReadPosRankSum=-1.362;SB=-9.732e-01;SOR=1.802;VQSLOD=5.09;culprit=QD GT:AD:DP:GQ:PL 0/1:18,8:26:99:239,0,542 2 142567738 rs28529494 G T 482.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.282;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.764;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=1.558;SB=-1.045e+02;SOR=0.180;VQSLOD=8.67;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,18:26:99:511,0,257 2 142567910 rs12990449 T C 693.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.671;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=1.939;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=-1.093;SB=-4.190e+02;SOR=0.493;VQSLOD=8.84;culprit=QD GT:AD:DP:GQ:PL 0/1:45,30:75:99:722,0,1305 2 143692388 rs76614188 T C 534.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-2.480e+02;SOR=1.061;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:563,42,0 2 143713700 rs351674 T A 830.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=0.00;SOR=6.358;VQSLOD=7.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:66:859,66,0 2 143718459 . T TAAAA 758.73 PASS AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.47;RPA=11,15;RU=A;SB=-3.577e+01;SOR=4.294;STR;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:25:51:796,51,0 2 143746494 rs10496935 C G 1858.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-8.130e+02;SOR=1.382;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1887,135,0 2 143787274 rs6430000 C T 1865.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.62;SB=-7.810e+02;SOR=1.573;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1894,141,0 2 143791014 rs2304700 G T 541.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.09;SB=-2.211e+02;SOR=1.721;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:42:570,42,0 2 143798189 rs9013 A G 905.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=0.827;SB=-3.220e+02;SOR=0.792;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:42,36:79:99:934,0,1174 2 143913004 rs2580857 T G 839.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.45;SB=-7.797e+01;SOR=4.003;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:63:868,63,0 2 143973860 rs1451805 G A 855.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.70;SB=-2.690e+02;SOR=2.066;VQSLOD=7.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:66:884,66,0 2 144193151 . C CTT 399.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;DP=24;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.99;RPA=14,16;RU=T;ReadPosRankSum=0.568;SB=-1.480e+02;SOR=1.609;STR;VQSLOD=5.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,16:24:83:437,0,83 2 144899559 rs3731958 C A 3300.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7605;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.14;ReadPosRankSum=0.523;SB=-1.358e+03;SOR=0.722;VQSLOD=5.77;culprit=FS GT:AD:DP:GQ:PL 1/1:1,105:106:99:3329,244,0 2 144934655 . A AG 1055.73 PASS AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.48;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;RPA=4,5;RU=G;SB=-7.297e+01;SOR=4.479;STR;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:87:1093,87,0 2 144934819 . T TAA,TA 773.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.392;DP=48;ExcessHet=3.0103;FS=2.496;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.45;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.84;RPA=14,16,15;RU=A;ReadPosRankSum=1.346;SB=-2.290e+02;SOR=0.293;STR;VQSLOD=8.99;culprit=MQRankSum GT:AD:DP:GQ:PL 1/2:5,12,22:48:99:811,383,476,171,0,181 2 145155731 rs10185359 T C 503.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=-2.101e+02;SOR=1.112;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:532,42,0 2 145255210 rs12691693 T C 2892.77 PASS AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.22;SB=-1.312e+03;SOR=1.657;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,99:99:99:2921,211,0 2 146583809 rs6760390 A C 113.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.75;ReadPosRankSum=-0.069;SB=-6.100e+01;SOR=1.022;VQSLOD=9.32;culprit=QD GT:AD:DP:GQ:PL 0/1:7,6:13:99:142,0,150 2 146584312 rs6735536 G A 181.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=-0.374;SB=-1.280e+02;SOR=0.693;VQSLOD=10.22;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:210,0,169 2 147596973 rs4411641 A G 517.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.244;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=-0.544;SB=-2.260e+02;SOR=0.805;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:30,19:49:99:546,0,787 2 148602544 . C CT 346.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.830;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.196;POSITIVE_TRAIN_SITE;QD=23.12;RPA=12,13;RU=T;ReadPosRankSum=-1.510;SB=-5.597e+01;SOR=1.739;STR;VQSLOD=3.17;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,14:15:35:384,35,0 2 148657589 rs2288190 A G 166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.438;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-0.058;SB=0.00;SOR=0.399;VQSLOD=10.02;culprit=FS GT:AD:DP:GQ:PL 0/1:9,6:15:99:195,0,308 2 148680427 rs2303392 G C 422.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=-0.779;SB=0.00;SOR=0.354;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:22,14:36:99:451,0,783 2 148680762 rs2303391 A G 624.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.176;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=0.595;SB=-3.200e+01;SOR=1.251;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:20,20:40:99:653,0,562 2 148680802 rs118048734 G A 299.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.101;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=-0.297;SB=0.00;SOR=0.540;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:12,10:22:99:328,0,401 2 148701099 rs66919703 GA G 170.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.54;RPA=15,14;RU=A;ReadPosRankSum=-1.230;SB=-5.300e+01;SOR=0.693;STR;VQSLOD=9.54;culprit=QD GT:AD:DP:GQ:PL 0/1:7,13:22:99:208,0,136 2 148733548 . T TA 352.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.80;RPA=7,8;RU=A;ReadPosRankSum=-1.322;SB=-1.190e+02;SOR=0.836;STR;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:20,16:37:99:390,0,466 2 149219983 rs13402768 T G 149.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=0.437;SB=0.00;SOR=0.551;VQSLOD=10.04;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:178,0,164 2 149240657 rs5835195 GT G 1365.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.375;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.24;RPA=13,12;RU=T;ReadPosRankSum=-1.331;SB=-3.510e+02;SOR=1.022;STR;VQSLOD=8.95;culprit=FS GT:AD:DP:GQ:PL 1/1:7,64:73:31:1403,31,0 2 149243260 rs2121344 G A 171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.658;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-0.695;SB=-3.577e+01;SOR=0.223;VQSLOD=9.88;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:200,0,180 2 149449185 rs6724787 G A 1145.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.699;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=4.499;HaplotypeScore=6.2130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=0.692;SB=-5.720e+02;SOR=0.948;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 0/1:33,43:76:99:1174,0,784 2 149520214 rs10193313 C A 404.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.027;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.40;ReadPosRankSum=1.605;SB=-4.076e+01;SOR=0.473;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 0/1:8,14:22:99:433,0,265 2 149853960 rs6738277 A G 679.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.932;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=1.536;SB=-1.340e+02;SOR=1.445;VQSLOD=6.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,25:54:99:708,0,811 2 150016809 rs16826652 T C 171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.414;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=0.112;SB=0.00;SOR=0.582;VQSLOD=9.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,7:15:99:200,0,259 2 150177878 rs2216126 T C 238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.645;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.84;ReadPosRankSum=0.402;SB=-9.200e+01;SOR=0.859;VQSLOD=9.71;culprit=QD GT:AD:DP:GQ:PL 0/1:17,10:27:99:267,0,428 2 150432976 rs11545261 C T 1110.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-4.710e+02;SOR=1.547;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:84:1139,84,0 2 150443689 rs4667420 C G 1745.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=-9.450e+02;SOR=1.179;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1774,129,0 2 150443813 rs4667419 C T 575.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.17;SB=-2.940e+02;SOR=1.329;VQSLOD=5.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:45:604,45,0 2 151326862 rs13000209 T C 360.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.80;SB=0.00;SOR=4.977;VQSLOD=8.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:389,33,0 2 151328284 . GA G 1224.76 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.428;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;MQRankSum=0.396;POSITIVE_TRAIN_SITE;QD=18.84;RPA=12,11;RU=A;ReadPosRankSum=0.089;SB=-3.610e+02;SOR=0.560;STR;VQSLOD=3.58;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:6,59:79:22:1262,22,0 2 151343988 rs66463062 A AT 729.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;DB;DP=38;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=61.13;MQ0=0;MQRankSum=1.754;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.72;ReadPosRankSum=0.944;SB=-2.150e+02;SOR=1.013;VQSLOD=0.481;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,22:38:99:767,0,196 2 151817160 rs2341928 G A 66.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.07;ReadPosRankSum=-0.099;SB=-2.402e+01;SOR=1.179;VQSLOD=8.64;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:95:95,0,187 2 151817179 rs2341929 A C 100.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.20;ReadPosRankSum=-0.850;SB=-5.800e+01;SOR=0.693;VQSLOD=9.30;culprit=QD GT:AD:DP:GQ:PL 0/1:10,4:14:99:129,0,226 2 151817189 rs2341930 A T 94.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.991;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.32;ReadPosRankSum=-0.916;SB=-5.200e+01;SOR=0.551;VQSLOD=9.20;culprit=QD GT:AD:DP:GQ:PL 0/1:11,4:15:99:123,0,234 2 151817207 rs2341931 T C 97.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.52;ReadPosRankSum=-0.853;SB=-5.000e+01;SOR=0.551;VQSLOD=9.27;culprit=QD GT:AD:DP:GQ:PL 0/1:11,4:15:99:126,0,229 2 151900223 rs7589036 T C 2776.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4699;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-1.425e+03;SOR=1.029;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:95:99:2805,205,0 2 151900390 rs150701043 TAAAAACAAAAAC TAAAAAC,T 1248.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;RPA=6,5,4;RU=AAAAAC;SB=-7.894e+00;SOR=5.421;STR;VQSLOD=4.39;culprit=FS GT:AD:DP:GQ:PL 1/2:0,9,5:30:99:1286,370,328,644,0,646 2 152108261 rs4665119 T G 670.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.94;SB=-2.471e+02;SOR=1.828;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:51:699,51,0 2 152109159 rs289885 C T 1211.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.81;SB=-7.597e+01;SOR=4.743;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:93:1240,93,0 2 152117780 rs2271811 T C 929.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.853;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.302;HaplotypeScore=2.6000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.271;SB=-4.670e+02;SOR=0.395;VQSLOD=10.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,33:72:99:958,0,1168 2 152118275 rs56376752 A G 1581.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.899;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=0.226;SB=-7.710e+02;SOR=0.722;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 0/1:58,59:117:99:1610,0,1574 2 152118338 . G GT 1022.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116;DP=101;ExcessHet=3.0103;FS=6.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;RPA=6,7;RU=T;ReadPosRankSum=0.711;SB=-5.050e+02;SOR=0.272;STR;VQSLOD=8.08;culprit=FS GT:AD:DP:GQ:PL 0/1:53,43:101:99:1060,0,1250 2 152127902 rs12987765 T C 247.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=0.113;SB=0.00;SOR=0.818;VQSLOD=9.96;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:276,0,223 2 152135415 rs11551174 C T 839.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=2.729;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.57;ReadPosRankSum=1.179;SB=-3.300e+02;SOR=0.982;VQSLOD=6.51;culprit=QD GT:AD:DP:GQ:PL 0/1:79,32:111:99:868,0,2130 2 152138522 rs3771886 T C 347.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.537;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=-0.409;SB=-1.610e+02;SOR=0.914;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:24,14:38:99:376,0,620 2 152139271 rs10169816 C T 428.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.230;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.325;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=-0.169;SB=-2.880e+02;SOR=0.269;VQSLOD=9.88;culprit=SOR GT:AD:DP:GQ:PL 0/1:12,18:30:99:457,0,302 2 152139416 rs1048135 G A 180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.123;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.61;ReadPosRankSum=0.569;SB=-8.500e+01;SOR=1.288;VQSLOD=6.70;culprit=QD GT:AD:DP:GQ:PL 0/1:12,9:21:99:209,0,318 2 152139493 rs10182245 A G 57.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.706;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.13;ReadPosRankSum=-1.479;SB=-5.150e-01;SOR=1.426;VQSLOD=7.28;culprit=QD GT:AD:DP:GQ:PL 0/1:11,3:14:86:86,0,297 2 152214424 rs3821322 C T 553.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.49;SB=0.00;SOR=5.549;VQSLOD=8.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:582,45,0 2 152230258 . C CA 82.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.19;RPA=16,17;RU=A;ReadPosRankSum=1.510;SB=0.00;SOR=1.402;STR;VQSLOD=8.74;culprit=FS GT:AD:DP:GQ:PL 0/1:3,6:10:31:120,0,31 2 152236045 rs71403164 TA T 477.74 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.41;RPA=14,13;RU=A;ReadPosRankSum=0.560;SB=-3.597e+01;SOR=1.387;STR;VQSLOD=7.88;culprit=FS GT:AD:DP:GQ:PL 0/1:4,27:40:0:512,0,0 2 152267672 rs7585604 G A 511.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=0.00;SOR=5.421;VQSLOD=7.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:540,42,0 2 152273503 rs6735771 G A 1163.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=19.3884;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-2.800e+02;SOR=2.712;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:90:1192,90,0 2 152293620 rs2444272 C T 345.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.126;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.61;ReadPosRankSum=0.510;SB=-1.630e+02;SOR=0.654;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 0/1:5,11:16:99:374,0,155 2 152295141 rs16830036 A G 491.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.363;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-1.536;SB=-1.710e+02;SOR=0.458;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:18,21:39:99:520,0,517 2 152303171 rs2432941 G A 511.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.583;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-1.553;SB=-5.100e+01;SOR=1.220;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:26,18:44:99:540,0,783 2 152311570 rs2444263 G A 1148.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.216;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.3413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=-0.272;SB=-7.320e+02;SOR=0.724;VQSLOD=8.95;culprit=FS GT:AD:DP:GQ:PL 0/1:63,47:110:99:1177,0,1698 2 152314385 rs16830047 G A 1452.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.780;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=1.604;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=-0.106;SB=-9.110e+02;SOR=0.502;VQSLOD=9.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,58:103:99:1481,0,1120 2 152314547 . C CA 291.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.35;RPA=3,4;RU=A;ReadPosRankSum=-0.331;SB=0.00;SOR=1.022;STR;VQSLOD=10.15;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:20:99:329,0,222 2 152315549 rs2444260 G T 385.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=1.186;SB=-1.765e+00;SOR=0.909;VQSLOD=8.73;culprit=FS GT:AD:DP:GQ:PL 0/1:23,13:36:99:414,0,705 2 152318713 rs59316798 TATC T 525.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.88;RPA=2,1;RU=ATC;ReadPosRankSum=0.679;SB=-1.720e+02;SOR=1.022;STR;VQSLOD=8.62;culprit=FS GT:AD:DP:GQ:PL 0/1:3,10:13:99:563,0,149 2 152320118 rs2123465 G A 939.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.655;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=0.103;SB=-4.460e+02;SOR=1.022;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:30,36:66:99:968,0,763 2 152322095 rs2444257 A T 1064.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=6.813;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=-0.595;SB=-6.840e+02;SOR=0.219;VQSLOD=8.43;culprit=FS GT:AD:DP:GQ:PL 0/1:26,43:69:99:1093,0,729 2 152331418 rs1065177 C G 630.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=3.703;HaplotypeScore=5.4043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=-0.695;SB=-1.850e+02;SOR=1.207;VQSLOD=7.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,27:63:99:659,0,880 2 152342481 rs16830090 A G 994.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.758;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=1.862;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=0.959;SB=-5.280e+02;SOR=0.454;VQSLOD=9.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,39:86:99:1023,0,1204 2 152348159 . G T 810.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.913;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.91;ReadPosRankSum=-0.369;SB=-3.850e+02;SOR=0.655;VQSLOD=7.32;culprit=QD GT:AD:DP:GQ:PL 0/1:55,36:91:99:839,0,1482 2 152349026 rs2288195 G A 653.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.225;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.880;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=1.149;SB=-8.500e+01;SOR=1.201;VQSLOD=7.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,23:50:99:682,0,729 2 152350462 rs4664455 T C 441.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.518;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=1.821;SB=-6.300e+01;SOR=0.859;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 0/1:13,15:28:99:470,0,376 2 152352843 rs7575451 C G 925.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.681;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.930;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-0.943;SB=-5.630e+02;SOR=0.742;VQSLOD=6.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,38:67:99:954,0,755 2 152369117 rs13023600 T C 897.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.06;SB=-1.971e+02;SOR=2.468;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:69:926,69,0 2 152374800 rs16830136 G A 1496.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.624;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=1.410;HaplotypeScore=5.5713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-0.061;SB=-8.490e+02;SOR=0.551;VQSLOD=8.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:68,62:131:99:1525,0,1470 2 152382329 rs7597735 G A 433.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.168;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=-0.809;SB=-2.801e+01;SOR=0.693;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:15,15:30:99:462,0,463 2 152382454 rs6721666 C G 1795.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.526;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=-0.465;SB=-7.780e+02;SOR=0.651;VQSLOD=8.58;culprit=FS GT:AD:DP:GQ:PL 0/1:65,69:135:99:1824,0,1732 2 152383913 rs2288198 T C 590.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.075;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.223;HaplotypeScore=1.7860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=-0.326;SB=-2.230e+02;SOR=0.314;VQSLOD=10.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,22:40:99:619,0,424 2 152387553 rs4664475 T C 1283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=1.610;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=-0.417;SB=-8.510e+02;SOR=0.530;VQSLOD=9.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,56:103:99:1312,0,1135 2 152388228 rs60806638 G C 655.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.408;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.861;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=-0.181;SB=-1.920e+02;SOR=1.385;VQSLOD=6.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,26:65:99:684,0,1099 2 152388415 rs56026241 AT A 776.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;DB;DP=49;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.53;RPA=2,1;RU=T;ReadPosRankSum=0.937;SB=-1.500e+02;SOR=0.450;STR;VQSLOD=9.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,23:49:99:814,0,884 2 152394534 rs3732310 T G 710.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.289;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=0.294;SB=-2.540e+02;SOR=0.645;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:37,25:63:99:739,0,979 2 152396726 . T TA 290.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=-0.859;POSITIVE_TRAIN_SITE;QD=10.38;RPA=7,8;RU=A;ReadPosRankSum=0.484;SB=-3.377e+01;SOR=0.252;STR;VQSLOD=3.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,15:28:99:328,0,264 2 152402171 rs4664055 C A 269.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=1.331;SB=0.00;SOR=0.527;VQSLOD=10.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,9:20:99:298,0,372 2 152403014 rs4664486 C T 585.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.665;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.138;SB=-1.630e+02;SOR=0.859;VQSLOD=9.99;culprit=FS GT:AD:DP:GQ:PL 0/1:24,23:48:99:614,0,664 2 152403071 rs34524403 C CT 63.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;DB;DP=20;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.90;RPA=18,19;RU=T;ReadPosRankSum=0.832;SB=-2.977e+01;SOR=0.132;STR;VQSLOD=8.29;culprit=QD GT:AD:DP:GQ:PL 0/1:7,6:20:94:101,0,94 2 152404294 rs2288201 C T 534.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.166;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=-0.315;SB=-1.240e+02;SOR=0.558;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:29,21:52:99:563,0,811 2 152409416 rs2288203 C T 966.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.960;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.816;SB=-1.410e+02;SOR=0.846;VQSLOD=9.11;culprit=FS GT:AD:DP:GQ:PL 0/1:31,35:68:99:995,0,778 2 152409809 rs4575719 C A 234.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.38;ReadPosRankSum=1.176;SB=-6.200e+01;SOR=0.883;VQSLOD=8.74;culprit=QD GT:AD:DP:GQ:PL 0/1:17,11:28:99:263,0,507 2 152417064 rs2288206 G A 962.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.236;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=10.265;HaplotypeScore=9.8791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.48;ReadPosRankSum=-0.012;SB=-4.910e+02;SOR=0.093;VQSLOD=5.02;culprit=FS GT:AD:DP:GQ:PL 0/1:13,34:48:99:991,0,387 2 152422076 rs2288210 C G 2003.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.722;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=1.324;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-0.374;SB=-1.069e+03;SOR=0.882;VQSLOD=7.43;culprit=DP GT:AD:DP:GQ:PL 0/1:70,75:145:99:2032,0,1947 2 152422087 rs2288211 A G 1939.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.407;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-0.040;SB=-1.066e+03;SOR=0.768;VQSLOD=8.49;culprit=FS GT:AD:DP:GQ:PL 0/1:71,74:145:99:1968,0,1905 2 152424933 . T TA 93.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.81;RPA=13,14;RU=A;ReadPosRankSum=2.316;SB=-4.100e+01;SOR=1.329;STR;VQSLOD=8.17;culprit=QD GT:AD:DP:GQ:PL 0/1:6,6:13:85:131,0,85 2 152425692 rs3732312 T C 719.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.368;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.516;SB=-2.000e+02;SOR=0.948;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:26,27:53:99:748,0,682 2 152427249 rs7568873 A G 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.393;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.576;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=0.714;SB=-9.600e+01;SOR=1.179;VQSLOD=7.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,13:28:99:309,0,424 2 152431888 rs35389145 C T 49.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.511;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.93;ReadPosRankSum=-0.843;SB=-3.400e+01;SOR=0.160;VQSLOD=7.47;culprit=QD GT:AD:DP:GQ:PL 0/1:12,5:18:78:78,0,403 2 152432311 rs33988153 T C 510.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.948;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.446;HaplotypeScore=1.8519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.64;ReadPosRankSum=-1.269;SB=-1.580e+02;SOR=1.105;VQSLOD=6.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,24:53:99:539,0,750 2 152432886 NEB G A 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=0.627;SB=0.00;SOR=0.874;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:10,12:22:99:375,0,280 2 152466728 rs58909595 T C 584.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.926;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.478;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=-2.832;SB=-1.280e+02;SOR=1.123;VQSLOD=6.35;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:19,21:40:99:613,0,521 2 152472417 rs62174707 C T 406.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.127;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.823;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=-0.318;SB=-9.732e-01;SOR=1.574;VQSLOD=6.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,14:38:99:435,0,764 2 152474001 rs4303716 A G 190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.868;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.95;ReadPosRankSum=1.838;SB=-2.501e+01;SOR=0.836;VQSLOD=8.80;culprit=QD GT:AD:DP:GQ:PL 0/1:16,8:24:99:219,0,438 2 152481977 rs10186482 A G 292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.075;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=4.260;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.30;ReadPosRankSum=-0.597;SB=-1.765e+00;SOR=2.670;VQSLOD=6.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,10:16:99:321,0,160 2 152487574 rs4233653 T C 942.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.357;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=8.330;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=-0.756;SB=-2.470e+02;SOR=1.697;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 0/1:44,34:78:99:971,0,1121 2 152490219 rs6709886 A G 1919.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.294;DB;DP=166;Dels=0.00;ExcessHet=3.0103;FS=1.983;HaplotypeScore=2.8316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-0.036;SB=-8.100e+02;SOR=0.887;VQSLOD=7.05;culprit=DP GT:AD:DP:GQ:PL 0/1:91,75:166:99:1948,0,2235 2 152490458 rs6710212 A G 2042.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.60;SB=-1.206e+03;SOR=0.927;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2071,153,0 2 152500449 rs13013209 C G 2748.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.52;SB=-1.423e+03;SOR=1.022;VQSLOD=5.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2777,202,0 2 152500961 . C A 783.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.177;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.85;ReadPosRankSum=-0.700;SB=-3.330e+02;SOR=0.648;VQSLOD=7.59;culprit=FS GT:AD:DP:GQ:PL 0/1:31,30:61:99:812,0,718 2 152527572 rs7426114 C T 2981.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.43;SB=-1.557e+03;SOR=1.122;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:3010,223,0 2 152531077 rs6711382 A G 3228.29 PASS AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.62;SB=-1.991e+03;SOR=0.912;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,109:109:99:3257,232,0 2 152536498 rs6735208 T A 3579.77 PASS AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-1.582e+03;SOR=1.629;VQSLOD=4.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,122:124:99:3608,265,0 2 152552062 rs6433569 A C 2599.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-1.432e+03;SOR=1.179;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2628,190,0 2 152566433 rs12464543 A G 1296.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=-2.840e+02;SOR=2.891;VQSLOD=7.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:96:1325,96,0 2 152573902 rs376503933 A AGGC 7719.73 PASS AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.27;RPA=1,2;RU=GGC;SB=-2.639e+03;SOR=1.572;STR;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,125:127:99:7757,376,0 2 152573981 rs4611637 A G 4624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=-2.278e+03;SOR=1.164;VQSLOD=5.28;culprit=DP GT:AD:DP:GQ:PL 1/1:0,157:157:99:4653,343,0 2 152581866 rs4300824 T C 2013.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.96;SB=-5.690e+02;SOR=2.494;VQSLOD=7.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2042,150,0 2 152584153 rs4664499 A C 3430.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.36;ReadPosRankSum=0.613;SB=-1.293e+03;SOR=0.869;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:1,112:113:99:3459,247,0 2 152827973 rs7567588 A G 1061.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.850;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.6873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=0.093;SB=-4.310e+02;SOR=0.691;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 0/1:45,42:87:99:1090,0,1107 2 152828281 rs7607341 C G 388.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.213;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=1.541;SB=-3.200e+01;SOR=1.284;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:14,14:28:99:417,0,423 2 152988610 . C CT 1264.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;DP=78;ExcessHet=3.0103;FS=0.859;MLEAC=1;MLEAF=0.500;MQ=60.14;MQ0=0;MQRankSum=1.151;POSITIVE_TRAIN_SITE;QD=16.43;RPA=1,2;RU=T;ReadPosRankSum=0.698;SB=-5.390e+02;SOR=0.813;STR;VQSLOD=0.451;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,34:78:99:1302,0,1721 2 152992237 rs12612031 G A 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=-1.072;SB=0.00;SOR=0.859;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:203,0,168 2 153000337 rs12617139 T A 250.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.458;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-1.544;SB=-1.010e+02;SOR=0.346;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:279,0,200 2 153001359 rs142275525 GAT G 1595.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQ0=0;MQRankSum=0.851;POSITIVE_TRAIN_SITE;QD=26.60;RPA=2,1;RU=AT;ReadPosRankSum=0.845;SB=-2.830e+02;SOR=0.818;STR;VQSLOD=3.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,36:60:99:1633,0,1103 2 153006452 rs13003423 G C 502.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.387;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.62;ReadPosRankSum=-0.791;SB=0.00;SOR=1.101;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:11,16:27:99:531,0,323 2 153034908 rs35872589 G GGT 328.27 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.287;DB;DP=10;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=32.83;ReadPosRankSum=1.501;SB=-1.852e+02;SOR=0.105;VQSLOD=1.91;culprit=SOR GT:AD:DP:GQ:PL 0/1:2,8:10:1:363,0,1 2 153192242 rs147562333 C A 1575.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.917;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=5.208;HaplotypeScore=4.5670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=0.883;SB=-5.560e+02;SOR=1.221;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 0/1:45,57:102:99:1604,0,1064 2 153192324 rs2003332 C T 699.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.486;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=-0.154;SB=-2.005e+01;SOR=0.693;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:23,23:47:99:728,0,696 2 153246147 rs13419000 A G 94.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=0.816;SB=-9.732e-01;SOR=2.303;VQSLOD=5.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,4:10:99:123,0,145 2 153247069 rs3890370 G A 110.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.52;ReadPosRankSum=1.864;SB=-6.800e+01;SOR=0.527;VQSLOD=9.44;culprit=QD GT:AD:DP:GQ:PL 0/1:7,6:13:99:139,0,215 2 153378459 rs4664114 T C 913.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-0.397;SB=-5.380e+02;SOR=0.704;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:25,41:66:99:942,0,647 2 153378574 rs4664592 A G 429.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.634;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=0.038;SB=-9.800e+01;SOR=1.785;VQSLOD=6.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,16:32:99:458,0,402 2 153378652 rs4664593 G A 63.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.38;ReadPosRankSum=-0.903;SB=-9.732e-01;SOR=1.609;VQSLOD=8.24;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:92:92,0,213 2 153399497 rs12614414 A C 208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.866;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=2.045;SB=-3.500e+01;SOR=0.368;VQSLOD=9.14;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:12,8:20:99:237,0,385 2 153405594 rs1155779 G A 755.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.653;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=0.736;SB=-4.670e+02;SOR=0.653;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:34,31:65:99:784,0,941 2 153405770 . G GC 124.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;RPA=3,4;RU=C;ReadPosRankSum=0.000;SB=0.00;SOR=0.551;STR;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:162,0,198 2 153415229 . A AT 195.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;DP=52;ExcessHet=3.0103;FS=7.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.84;RPA=15,16;RU=T;ReadPosRankSum=0.078;SB=-1.417e+01;SOR=1.981;STR;VQSLOD=5.40;culprit=QD GT:AD:DP:GQ:PL 0/1:32,19:52:99:233,0,237 2 153415244 . T C 231.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.982;DP=56;Dels=0.00;ExcessHet=3.0103;FS=7.569;HaplotypeScore=28.3185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-1.305;SB=-1.930e+02;SOR=0.134;VQSLOD=5.21;culprit=QD GT:AD:DP:GQ:PL 0/1:41,15:56:99:260,0,1122 2 153415244 . T TC 1057.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;DP=56;ExcessHet=3.0103;FS=2.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.23;RPA=4,5;RU=C;ReadPosRankSum=-0.374;SB=-3.080e+02;SOR=0.327;STR;VQSLOD=5.21;culprit=QD GT:AD:DP:GQ:PL 0/1:17,38:56:99:1095,0,239 2 153415376 rs6434098 T G 1596.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.408;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=2.358;HaplotypeScore=2.6797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-0.926;SB=-8.670e+02;SOR=0.871;VQSLOD=7.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,62:117:99:1625,0,1388 2 153415588 rs6434099 T C 333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.813;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.54;ReadPosRankSum=1.423;SB=0.00;SOR=0.914;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:362,0,252 2 153417325 rs6713836 A G 45.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.86;ReadPosRankSum=-1.481;SB=-5.150e-01;SOR=1.136;VQSLOD=8.33;culprit=QD GT:AD:DP:GQ:PL 0/1:13,3:16:74:74,0,374 2 153435499 rs80057561 G A 401.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.290;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=-1.664;SB=-1.240e+02;SOR=1.580;VQSLOD=6.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,15:33:99:430,0,463 2 153463984 rs72210499 TACAC T,TAC 577.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.37;MQ0=0;POSITIVE_TRAIN_SITE;QD=20.72;RPA=18,16,17;RU=AC;SB=-7.894e+00;SOR=5.283;STR;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 1/2:0,8,5:22:99:615,189,173,297,0,258 2 153464021 rs2118376 A G 216.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.639;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=-0.944;SB=0.00;SOR=0.976;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:245,0,190 2 153468187 rs2304558 C T 276.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.689;HaplotypeScore=5.4290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.77;ReadPosRankSum=-1.168;SB=-2.120e+02;SOR=0.366;VQSLOD=8.76;culprit=QD GT:AD:DP:GQ:PL 0/1:33,15:48:99:305,0,936 2 153471255 rs373661748 T TCAAAA 566.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.89;RPA=5,6;RU=CAAAA;ReadPosRankSum=-0.178;SB=0.00;SOR=0.914;STR;VQSLOD=8.70;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:19:99:604,0,450 2 153473435 rs7596408 G A 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=5.497;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-0.393;SB=-2.004e+01;SOR=2.419;VQSLOD=5.74;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:247,0,173 2 153473492 rs13417781 G A 442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.386;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.386;HaplotypeScore=1.8216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=1.380;SB=-1.640e+02;SOR=0.460;VQSLOD=8.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,17:39:99:471,0,608 2 153473521 rs12693415 A C 659.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.285;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=0.578;SB=-2.030e+02;SOR=0.628;VQSLOD=9.92;culprit=FS GT:AD:DP:GQ:PL 0/1:28,23:51:99:688,0,838 2 153473794 rs2304556 T G 160.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.258;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.43;ReadPosRankSum=-0.496;SB=-5.900e+01;SOR=0.527;VQSLOD=9.81;culprit=QD GT:AD:DP:GQ:PL 0/1:17,8:25:99:189,0,465 2 153478931 rs7609122 T C 1062.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.91;SB=0.00;SOR=6.666;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:81:1091,81,0 2 153481943 rs2346532 T C 1531.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-5.130e+02;SOR=1.863;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1560,114,0 2 153483257 rs7604573 T C 261.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.719;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=0.000;SB=-1.765e+00;SOR=2.215;VQSLOD=6.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,9:16:99:290,0,194 2 153483281 rs9989874 A C 139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.962;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-0.528;SB=0.00;SOR=0.551;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:168,0,200 2 153484685 rs3811570 G A 271.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=0.000;SB=-3.477e+01;SOR=0.527;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:5,10:15:99:300,0,135 2 153492910 rs1561267 G T 2340.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=-8.630e+02;SOR=2.026;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2369,175,0 2 153497168 rs1465818 C T 1003.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-3.270e+02;SOR=1.911;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:78:1032,78,0 2 153504552 rs12693429 G A 881.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.450;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=1.142;HaplotypeScore=2.7858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=2.957;SB=-1.870e+02;SOR=0.931;VQSLOD=6.79;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:35,32:67:99:910,0,999 2 153514583 rs6713779 G C 292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=0.909;SB=-1.660e+02;SOR=0.511;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:15,11:26:99:321,0,356 2 153514689 rs6746079 C T 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=2.017;SB=0.00;SOR=0.693;VQSLOD=9.25;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,5:10:99:166,0,168 2 153519524 rs1036526 A G 506.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.280;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=7.971;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-0.703;SB=-8.600e+01;SOR=2.268;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 0/1:20,19:39:99:535,0,504 2 153520782 rs3762507 A G 336.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.955;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.203;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=-1.447;SB=-9.732e-01;SOR=2.461;VQSLOD=5.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,11:23:99:365,0,340 2 153520819 rs3762506 C A 95.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.160;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.37;ReadPosRankSum=0.075;SB=-1.765e+00;SOR=0.804;VQSLOD=9.26;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:99:124,0,221 2 153529361 rs2304559 T C 210.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=-0.409;SB=0.00;SOR=1.445;VQSLOD=7.95;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:99:239,0,118 2 153533260 . G A 337.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.238;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.68;ReadPosRankSum=1.461;SB=-2.060e+02;SOR=0.665;VQSLOD=3.66;culprit=QD GT:AD:DP:GQ:PL 0/1:29,15:44:99:366,0,742 2 153535670 rs10166987 C T 1022.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.41;SB=-5.680e+02;SOR=1.061;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:78:1051,78,0 2 153549814 rs10172024 G C 306.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=1.998;SB=-1.070e+02;SOR=0.655;VQSLOD=9.15;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:16,12:28:99:335,0,488 2 153572438 rs2346548 C T 866.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-1.901e+02;SOR=2.753;VQSLOD=5.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:66:895,66,0 2 153572773 rs111754305 T C 219.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=-1.121;SB=0.00;SOR=0.836;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:248,0,181 2 153573528 rs4664605 C T 221.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=0.082;SB=-1.390e+02;SOR=0.495;VQSLOD=10.30;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:250,0,246 2 153576264 rs11328553 GA G 121.74 PASS AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.07;RPA=24,23;RU=A;SB=0.00;SOR=4.977;STR;VQSLOD=1.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:29:159,29,0 2 153576279 . A C 251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.838;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.37;ReadPosRankSum=-1.679;SB=0.00;SOR=1.179;VQSLOD=8.00;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:280,0,160 2 153576580 rs67014385 A ATTTC 1209.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;DB;DP=55;ExcessHet=3.0103;FS=3.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=-1.944;SB=-1.710e+02;SOR=1.494;VQSLOD=5.62;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:30,21:55:99:1247,0,1775 2 153576599 rs13418460 A C 423.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.544;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.384;HaplotypeScore=2.8133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.02;ReadPosRankSum=-1.362;SB=-8.100e+01;SOR=0.941;VQSLOD=5.37;culprit=QD GT:AD:DP:GQ:PL 0/1:30,17:47:99:452,0,727 2 153576607 rs13430085 G A 348.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.059;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.579;HaplotypeScore=2.8133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-1.078;SB=-1.709e+01;SOR=1.291;VQSLOD=4.78;culprit=QD GT:AD:DP:GQ:PL 0/1:29,15:44:99:377,0,855 2 153577013 rs9646744 G A 565.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.834;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=3.953;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-2.415;SB=-2.930e+02;SOR=0.761;VQSLOD=4.54;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:29,23:52:99:594,0,767 2 154800999 rs1401518 T C 3075.77 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.02;SB=-1.430e+03;SOR=1.418;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:108:99:3104,226,0 2 155265623 rs1405936 G A 1868.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.66;SB=-6.310e+02;SOR=2.056;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1897,141,0 2 155306885 rs697648 C T 1130.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-2.401e+02;SOR=3.026;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:87:1159,87,0 2 157182629 rs7562656 G A 550.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.247;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=4.773;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=0.422;SB=-1.920e+02;SOR=1.568;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 0/1:19,20:39:99:579,0,579 2 157183211 rs35479735 TC T 2490.73 PASS AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;RPA=3,2;RU=C;SB=-4.780e+02;SOR=2.910;STR;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:2528,181,0 2 157183635 rs834834 C T 147.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=6.892;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.864;SB=-1.085e+02;SOR=0.042;VQSLOD=9.29;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:176,0,167 2 157189011 rs834836 G C 1357.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.12;SB=-5.720e+02;SOR=1.501;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1386,99,0 2 157358052 rs297588 A G 258.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.863;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=0.980;SB=-4.276e+01;SOR=0.593;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:4,9:13:99:287,0,113 2 157406249 rs2116665 G A 1838.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=0.583;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=0.576;SB=-1.086e+03;SOR=0.621;VQSLOD=7.30;culprit=DP GT:AD:DP:GQ:PL 0/1:90,73:163:99:1867,0,2401 2 157406296 rs2116664 A C 1626.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.697;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=0.341;SB=-8.210e+02;SOR=0.640;VQSLOD=8.72;culprit=FS GT:AD:DP:GQ:PL 0/1:76,63:139:99:1655,0,1832 2 157425502 . C CT 178.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQ0=0;MQRankSum=1.226;POSITIVE_TRAIN_SITE;QD=5.42;RPA=16,17;RU=T;ReadPosRankSum=0.747;SB=-2.302e+01;SOR=0.713;STR;VQSLOD=2.71;culprit=QD GT:AD:DP:GQ:PL 0/1:19,14:40:99:216,0,320 2 157427593 rs1469652 T C 1013.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.79;SB=-2.371e+02;SOR=2.621;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:78:1042,78,0 2 157427837 rs1469651 C A 401.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.289;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.376;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=0.698;SB=-2.070e+02;SOR=0.368;VQSLOD=9.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,17:40:99:430,0,726 2 157427850 rs1469650 G A 397.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.048;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.500;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-1.135;SB=-2.050e+02;SOR=0.361;VQSLOD=10.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,17:33:99:426,0,494 2 157467040 rs11892929 A G 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.938;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=-0.178;SB=-6.900e+01;SOR=0.473;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:10,8:18:99:207,0,270 2 157467106 rs11894134 T C 298.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.060;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=-0.483;SB=-2.030e+02;SOR=0.608;VQSLOD=8.33;culprit=FS GT:AD:DP:GQ:PL 0/1:16,13:29:99:327,0,364 2 158157361 rs3214040 C T 4765.77 PASS AC=2;AF=1.00;AN=2;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-2.550e+03;SOR=0.931;VQSLOD=6.81;culprit=DP GT:AD:DP:GQ:PL 1/1:0,157:158:99:4794,355,0 2 158162475 rs3214039 C T 834.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.78;SB=-7.497e+01;SOR=4.091;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:863,66,0 2 158162521 rs3816595 T G 356.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.81;SB=0.00;SOR=4.804;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:385,30,0 2 158165004 rs6728956 C T 381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=0.00;SOR=4.977;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:410,33,0 2 158275111 . T TA 323.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=0.057;POSITIVE_TRAIN_SITE;QD=11.56;RPA=17,18;RU=A;ReadPosRankSum=-0.280;SB=-9.251e+01;SOR=0.544;STR;VQSLOD=3.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,20:35:94:361,0,94 2 158291188 rs11904180 A C 715.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.63;SB=-4.860e+02;SOR=0.770;VQSLOD=5.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:54:744,54,0 2 158295508 rs150314444 C T 621.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.322;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=-0.014;SB=-2.150e+02;SOR=1.136;VQSLOD=7.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,22:39:99:650,0,378 2 158395079 rs7576514 C G 2486.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=-1.289e+03;SOR=1.302;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2515,184,0 2 158400908 rs6728987 C T 1449.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;SB=-2.151e+02;SOR=3.365;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1478,108,0 2 158401137 rs10432556 T C 1609.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.20;SB=-1.573e+02;SOR=4.493;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1638,135,0 2 158593905 rs2228948 C T 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.191;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.801;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.23;ReadPosRankSum=-1.315;SB=-1.420e+02;SOR=0.102;VQSLOD=9.04;culprit=QD GT:AD:DP:GQ:PL 0/1:12,9:21:99:201,0,364 2 158626980 rs1146031 C T 3209.76 PASS AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7876;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.92;SB=-1.837e+03;SOR=0.995;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,111:111:99:3238,235,0 2 158636910 rs2227861 G A 3194.83 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.14;SB=-1.509e+03;SOR=1.418;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3223,235,0 2 158655883 . C CAA 567.73 PASS AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.69;RPA=11,13;RU=A;SB=-1.563e+02;SOR=2.049;STR;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:605,48,0 2 158958461 rs6757689 T G 257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.295;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=0.283;SB=0.00;SOR=0.297;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:16,9:25:99:286,0,487 2 158958471 rs6710348 G A 257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.135;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=0.551;SB=-1.765e+00;SOR=0.850;VQSLOD=9.14;culprit=QD GT:AD:DP:GQ:PL 0/1:19,10:29:99:286,0,651 2 158958551 rs67998287 G GA 1239.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.791;DB;DP=93;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-0.142;SB=-4.990e+02;SOR=0.560;VQSLOD=9.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,32:93:99:1277,0,2548 2 158958767 rs6713525 G A 371.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.562;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.340;SB=0.00;SOR=0.627;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:14,13:27:99:400,0,492 2 158977794 rs2074955 A G 100.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.16;ReadPosRankSum=-1.004;SB=0.00;SOR=0.330;VQSLOD=10.06;culprit=FS GT:AD:DP:GQ:PL 0/1:7,4:11:99:129,0,222 2 159028800 rs2222390 A G 1088.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-4.450e+02;SOR=1.418;VQSLOD=4.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:81:1117,81,0 2 159166069 rs7559772 T C 1430.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-5.860e+02;SOR=1.508;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1459,105,0 2 159312733 rs1111212 C T 2941.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-1.648e+03;SOR=0.848;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:2970,217,0 2 159434492 rs2356188 G A 725.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.22;SB=-4.076e+01;SOR=4.615;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:57:754,57,0 2 159434500 rs2356189 A G 763.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.72;SB=-1.185e+02;SOR=3.258;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:57:792,57,0 2 159487785 rs10933495 A C 473.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-2.890e+02;SOR=0.941;VQSLOD=5.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:36:502,36,0 2 159487836 . T G 116.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.722;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.62;ReadPosRankSum=0.349;SB=-7.300e+01;SOR=0.368;VQSLOD=8.54;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:145,0,127 2 159498940 rs2253537 A T 450.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.71;SB=0.00;SOR=5.136;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:479,36,0 2 159520085 rs3771679 G C 851.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.76;SB=-2.371e+02;SOR=2.303;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:63:880,63,0 2 159522879 rs2248854 C G 510.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=-8.197e+01;SOR=2.985;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:539,39,0 2 159530651 rs2711034 A T 1337.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SB=-1.523e+02;SOR=4.021;VQSLOD=7.03;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,40:40:99:1366,102,0 2 159534863 rs2356505 A G 468.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=0.00;SOR=5.421;VQSLOD=7.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:497,42,0 2 159534874 rs2356506 C T 571.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.92;SB=-8.097e+01;SOR=3.258;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:45:600,45,0 2 159534889 rs2711040 C T 656.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.55;SB=-7.697e+01;SOR=3.500;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:685,51,0 2 159651973 rs1356173 G A 1302.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.317;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=-0.443;SB=-8.410e+02;SOR=0.760;VQSLOD=8.25;culprit=FS GT:AD:DP:GQ:PL 0/1:47,55:103:99:1331,0,1164 2 159663616 rs12535 G A 431.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.719;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.64;ReadPosRankSum=0.393;SB=-2.550e+02;SOR=0.816;VQSLOD=8.80;culprit=QD GT:AD:DP:GQ:PL 0/1:29,21:50:99:460,0,830 2 159731466 rs10186922 A G 550.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=1.377;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.20;ReadPosRankSum=-0.595;SB=-2.740e+02;SOR=1.127;VQSLOD=7.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,20:34:99:579,0,367 2 159731728 rs62185466 A G 291.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.777;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.84;ReadPosRankSum=-0.711;SB=-3.500e+01;SOR=1.445;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:14:99:320,0,124 2 159731808 rs13420835 G A 145.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.608;SB=-7.001e+01;SOR=0.527;VQSLOD=10.22;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:174,0,129 2 159954420 rs13414916 C T 518.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.648;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=1.802;SB=-2.200e+02;SOR=0.602;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:14,22:36:99:547,0,371 2 160019863 rs12466551 A G 2227.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-1.171e+03;SOR=1.103;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2256,163,0 2 160028588 rs184386000 G C 1175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.431;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=18.379;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=-1.428;SB=-1.830e+02;SOR=2.720;VQSLOD=3.51;culprit=FS GT:AD:DP:GQ:PL 0/1:29,37:66:99:1204,0,819 2 160033174 rs759034 A G 530.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.78;SB=0.00;SOR=5.421;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:559,42,0 2 160034919 rs4665031 A G 376.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.94;SB=0.00;SOR=4.804;VQSLOD=7.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:405,30,0 2 160035207 rs6748288 T C 4411.77 PASS AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-2.564e+03;SOR=0.978;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,149:149:99:4440,334,0 2 160042430 rs13389867 G A 1954.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.593;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=2.093;HaplotypeScore=2.9552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=-1.062;SB=-8.550e+02;SOR=0.903;VQSLOD=7.76;culprit=DP GT:AD:DP:GQ:PL 0/1:74,78:152:99:1983,0,1814 2 160055448 rs13430891 T A 692.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=0.303;SB=-2.380e+02;SOR=0.693;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:29,29:58:99:721,0,874 2 160073895 rs4665042 G C 976.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.51;SB=-2.940e+02;SOR=2.093;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:72:1005,72,0 2 160075886 . G GC 5778.73 PASS AC=2;AF=1.00;AN=2;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=30.53;RPA=3,4;RU=C;SB=-2.131e+03;SOR=1.394;STR;VQSLOD=5.39;culprit=DP GT:AD:DP:GQ:PL 1/1:0,146:155:99:5816,439,0 2 160076026 rs2303334 C G 1937.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.41;SB=-1.047e+03;SOR=0.693;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1966,150,0 2 160076077 rs2303335 T A 1955.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.72;SB=-9.240e+02;SOR=1.179;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1984,147,0 2 160082354 rs12692544 C T 2186.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.55;SB=-9.000e+02;SOR=1.739;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2215,169,0 2 160082364 rs34344829 A G 2114.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.57;SB=-6.170e+02;SOR=2.194;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2143,157,0 2 160082384 rs13419975 T A 1686.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=-4.270e+02;SOR=2.753;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1715,132,0 2 160084263 rs2042495 A G 827.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-1.205e+02;SOR=3.611;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:69:856,69,0 2 160084534 rs2288111 A G 576.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.36;SB=-1.671e+02;SOR=1.981;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:45:605,45,0 2 160085506 rs72955954 A G 744.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.284;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=1.016;SB=-8.400e+01;SOR=0.582;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:30,27:57:99:773,0,891 2 160087535 rs3821301 T G 1594.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-5.360e+02;SOR=2.170;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1623,117,0 2 160112881 rs7591849 G T 1587.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6515;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SB=-7.160e+02;SOR=1.609;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1616,117,0 2 160114437 rs3213715 G A 1919.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-3.600e+02;SOR=3.098;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1948,144,0 2 160116281 rs4665052 A G 833.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.06;SB=-3.380e+02;SOR=1.681;VQSLOD=5.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:33:66:862,66,0 2 160132196 . A AC 576.73 PASS AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.93;RPA=7,8;RU=C;SB=-1.483e+02;SOR=2.179;STR;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:19:51:614,51,0 2 160136337 rs174264 G A 392.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.06;SB=-2.341e+02;SOR=0.976;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:30:421,30,0 2 160176943 rs174229 A C 1215.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.74;SB=-4.290e+02;SOR=1.675;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:93:1244,93,0 2 160182074 rs440241 T A 409.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=0.00;SOR=4.977;VQSLOD=8.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:438,33,0 2 160182302 rs415793 C T 1157.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-6.780e+02;SOR=0.693;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:90:1186,90,0 2 160203934 rs965163 A C,T 488.77 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.55;SB=-6.800e+01;SOR=3.258;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/2:0,9,7:16:99:517,217,193,300,0,282 2 160239378 rs2302927 A G 224.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=9.863;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-1.751;SB=-1.393e+02;SOR=0.025;VQSLOD=5.28;culprit=FS GT:AD:DP:GQ:PL 0/1:9,11:20:99:253,0,270 2 160241936 rs1469015 A G 182.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=-0.546;SB=0.00;SOR=1.270;VQSLOD=10.30;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:211,0,119 2 160243183 rs918351 T A 55.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.07;ReadPosRankSum=-0.183;SB=0.00;SOR=0.180;VQSLOD=9.11;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:84:84,0,267 2 160243184 rs918350 A T 57.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.25;ReadPosRankSum=-0.183;SB=0.00;SOR=0.180;VQSLOD=9.19;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:86:86,0,279 2 160261387 rs11551108 T C 383.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=1.718;SB=-1.330e+02;SOR=0.813;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 0/1:20,15:35:99:412,0,527 2 160261729 rs74694096 AC A 435.73 PASS AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.37;SB=0.00;SOR=5.136;VQSLOD=7.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:473,36,0 2 160285060 rs57144725 C T 192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=1.252;SB=0.00;SOR=0.582;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:221,0,238 2 160285575 rs12473781 C T 131.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-0.233;SB=-3.577e+01;SOR=0.093;VQSLOD=9.53;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,5:12:99:160,0,243 2 160285660 rs10754963 T A 284.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.429;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=-0.775;SB=-1.200e+02;SOR=0.743;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:17,12:29:99:313,0,403 2 160295297 rs2302923 C A 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.780;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=0.281;SB=-3.200e+01;SOR=0.569;VQSLOD=10.31;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:207,0,214 2 160304741 rs12470533 A T 506.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.507;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-0.141;SB=-1.880e+02;SOR=0.673;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 0/1:18,21:39:99:535,0,439 2 160335315 rs72947590 T C 477.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.232;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=-0.389;SB=-3.300e+01;SOR=1.051;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:11,15:26:99:506,0,316 2 160585740 rs3821299 C A 395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.123;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.000;SB=-7.997e+01;SOR=0.121;VQSLOD=9.72;culprit=SOR GT:AD:DP:GQ:PL 0/1:12,15:27:99:424,0,381 2 160602258 rs59109898 A G 500.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.311;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=-0.300;SB=-9.300e+01;SOR=0.717;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 0/1:31,19:50:99:529,0,857 2 160604452 rs11555185 C T 715.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.581;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=5.329;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=0.775;SB=-2.480e+02;SOR=1.596;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 0/1:35,28:63:99:744,0,839 2 160604812 rs1427329 C T 1374.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.169;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=1.923;SB=-8.090e+02;SOR=0.640;VQSLOD=9.11;culprit=FS GT:AD:DP:GQ:PL 0/1:60,52:112:99:1403,0,1513 2 160605268 rs1365803 T C 2537.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-1.477e+03;SOR=0.798;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2566,190,0 2 160621354 . G GT 247.73 PASS AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.52;RPA=11,12;RU=T;SB=0.00;SOR=4.977;STR;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:13:33:285,33,0 2 160623680 rs115325232 A G 331.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.132;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=-1.179;SB=-6.797e+01;SOR=0.124;VQSLOD=9.25;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,13:23:99:360,0,305 2 160637267 rs2303552 C A 302.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.556;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=0.383;SB=0.00;SOR=0.126;VQSLOD=9.96;culprit=FS GT:AD:DP:GQ:PL 0/1:14,11:25:99:331,0,456 2 160637324 rs2303551 A G 1450.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-4.870e+02;SOR=2.208;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1479,108,0 2 160639970 rs2114626 T C 820.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.020;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-1.268;SB=-3.720e+02;SOR=0.758;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:26,33:59:99:849,0,749 2 160663435 rs12463589 T C 795.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.491;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.547;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=-1.185;SB=-2.160e+02;SOR=1.244;VQSLOD=6.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,27:40:99:824,0,317 2 160663678 rs7566887 T C 925.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.45;SB=-4.010e+02;SOR=1.675;VQSLOD=5.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:72:954,72,0 2 160673526 rs2059696 A G 465.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.453;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.921;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.96;ReadPosRankSum=0.818;SB=-2.110e+02;SOR=0.301;VQSLOD=9.80;culprit=QD GT:AD:DP:GQ:PL 0/1:33,19:52:99:494,0,964 2 160676427 rs12692566 C A 782.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.846;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=5.490;HaplotypeScore=2.7043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-0.076;SB=-1.800e+02;SOR=1.432;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 0/1:37,30:67:99:811,0,923 2 160676445 rs60586916 A AT 439.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;DB;DP=54;ExcessHet=3.0103;FS=1.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.56;RPA=6,7;RU=T;ReadPosRankSum=0.488;SB=-4.700e+01;SOR=1.063;STR;VQSLOD=7.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,20:54:99:477,0,614 2 160688351 rs6755783 C T 354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.257;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=1.824;SB=-3.400e+01;SOR=0.914;VQSLOD=9.90;culprit=FS GT:AD:DP:GQ:PL 0/1:9,11:20:99:383,0,266 2 160691978 rs2303548 G A 461.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.447;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.304;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=-0.634;SB=-1.980e+02;SOR=0.425;VQSLOD=9.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,21:48:99:490,0,805 2 160698700 rs41265133 A C 1414.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.238;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.15;ReadPosRankSum=1.182;SB=-2.371e+02;SOR=2.124;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:1,43:44:74:1443,74,0 2 160707075 rs41264207 C T 305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.609;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=0.660;SB=-2.901e+01;SOR=0.527;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:12,10:22:99:334,0,302 2 160708609 rs2162499 C T 539.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.242;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-0.890;SB=-1.270e+02;SOR=0.730;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:26,22:48:99:568,0,830 2 160708645 rs2162500 C G 811.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.440;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=-0.048;SB=-2.970e+02;SOR=0.833;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:39,30:69:99:840,0,1032 2 160708931 rs202164612 TTG T 63.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.03;ReadPosRankSum=2.065;SB=-6.590e+00;SOR=0.693;VQSLOD=5.55;culprit=QD GT:AD:DP:GQ:PL 0/1:13,8:22:99:101,0,365 2 160710922 rs2729705 T C 1442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-0.893;SB=-7.350e+02;SOR=0.649;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:43,58:101:99:1471,0,1110 2 160711045 rs3951216 G C 724.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.785;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-0.821;SB=-2.000e+02;SOR=0.646;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:34,25:59:99:753,0,904 2 160711248 rs975491 T C 707.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-1.991e+02;SOR=2.093;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:736,54,0 2 160711556 rs975490 T G 1858.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-5.600e+02;SOR=2.303;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1887,135,0 2 160714990 rs41264213 A G 719.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.215;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=6.233;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-0.402;SB=-3.230e+02;SOR=0.223;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 0/1:28,28:56:99:748,0,775 2 160729005 rs1397706 C T 640.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.634;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=4.551;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.81;ReadPosRankSum=0.054;SB=-2.790e+02;SOR=1.277;VQSLOD=6.45;culprit=QD GT:AD:DP:GQ:PL 0/1:54,28:82:99:669,0,1320 2 160729134 rs1397705 A C 1617.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-5.120e+02;SOR=2.049;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1646,117,0 2 160729186 rs10168271 T C 274.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.005;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=0.529;SB=0.00;SOR=0.693;VQSLOD=10.36;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:303,0,338 2 160737495 rs2729712 A C 498.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.35;SB=-8.397e+01;SOR=2.985;VQSLOD=5.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:527,39,0 2 160737560 rs2729711 G T 1113.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.75;SB=-2.231e+02;SOR=2.833;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:90:1142,90,0 2 160738803 rs35675007 G A 1222.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.087;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.769;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-0.889;SB=-5.610e+02;SOR=0.606;VQSLOD=9.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,48:102:99:1251,0,1381 2 160742771 rs2666986 A G 571.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.66;SB=0.00;SOR=5.549;VQSLOD=7.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:600,45,0 2 160743040 rs2271381 T A 1520.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.42;SB=-4.900e+02;SOR=2.124;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1549,117,0 2 160805993 rs6726923 C G 477.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.86;SB=-3.876e+01;SOR=4.174;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:506,42,0 2 160807742 rs952184 A T 1527.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-4.650e+02;SOR=2.208;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1556,117,0 2 160825812 . C T 1210.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.655;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.771;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.53;ReadPosRankSum=-1.005;SB=-5.350e+02;SOR=0.587;VQSLOD=7.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,49:105:99:1239,0,1403 2 160885418 rs35771982 G C 1162.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.290;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=1.531;HaplotypeScore=4.8061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=0.178;SB=-5.150e+02;SOR=0.876;VQSLOD=7.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,48:114:99:1191,0,1742 2 160885442 rs3749117 T C 1257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.609;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=-0.652;SB=-7.790e+02;SOR=0.689;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:66,51:117:99:1286,0,1748 2 160889673 rs2203053 G A 923.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.789;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.844;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=-0.072;SB=-2.870e+02;SOR=0.288;VQSLOD=10.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,33:61:99:952,0,800 2 160901517 rs4665143 A G 1501.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.787;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=-1.328;SB=-6.830e+02;SOR=0.806;VQSLOD=6.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,52:92:99:1530,0,1044 2 160919040 rs11285500 AC A 420.73 PASS AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;RPA=5,4;RU=C;SB=-4.076e+01;SOR=3.611;STR;VQSLOD=7.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:13:36:458,36,0 2 160938202 rs4399677 T A 190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-0.847;SB=-6.800e+01;SOR=0.859;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:219,0,176 2 160958349 rs34330288 GA G 546.27 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.109;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.84;RPA=12,11;RU=A;ReadPosRankSum=0.860;SB=-1.422e+02;SOR=1.329;STR;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 1/1:3,26:37:1:581,1,0 2 160964057 rs13009231 G T 232.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.096;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.70;ReadPosRankSum=-0.147;SB=-3.400e+01;SOR=0.412;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:14,10:24:99:261,0,475 2 160964059 rs13008664 A G 269.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.843;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-0.469;SB=-2.502e+01;SOR=0.412;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:14,10:24:99:298,0,448 2 160968743 rs66470452 CA C 418.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.51;RPA=2,1;RU=A;ReadPosRankSum=0.782;SB=-3.700e+01;SOR=0.495;STR;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:15,12:27:99:456,0,583 2 161028992 rs1037694 T C 562.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.304;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-0.449;SB=-4.050e+02;SOR=0.433;VQSLOD=9.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,27:52:99:591,0,741 2 161169956 rs10929978 G C 542.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=-1.245e+02;SOR=2.712;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:571,42,0 2 161174485 rs148076191 G A 206.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.80;ReadPosRankSum=-1.184;SB=-4.076e+01;SOR=0.693;VQSLOD=8.78;culprit=FS GT:AD:DP:GQ:PL 0/1:3,8:11:94:235,0,94 2 162059969 rs11884495 A T 896.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.871;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.931;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.858;SB=-4.320e+02;SOR=0.509;VQSLOD=9.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,34:73:99:925,0,1024 2 162091836 rs3754970 T C 864.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.847;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=6.610;HaplotypeScore=1.7834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=1.799;SB=-8.200e+01;SOR=1.739;VQSLOD=5.23;culprit=FS GT:AD:DP:GQ:PL 0/1:42,28:71:99:893,0,1166 2 162175290 rs1116165 T C 2275.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.94;SB=-8.690e+02;SOR=1.905;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2304,169,0 2 162224193 . G GT 286.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.83;RPA=5,6;RU=T;ReadPosRankSum=0.547;SB=-1.400e+02;SOR=0.551;STR;VQSLOD=9.21;culprit=QD GT:AD:DP:GQ:PL 0/1:28,14:45:99:324,0,726 2 162226336 rs10497214 G T 284.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.812;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.906;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=0.027;SB=-1.040e+02;SOR=0.330;VQSLOD=9.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,12:25:99:313,0,393 2 162247772 rs1921674 C T 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=-0.376;SB=-1.765e+00;SOR=1.402;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:202,0,187 2 162280748 rs890076 G A 1156.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.510;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=4.035;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=1.203;SB=-3.060e+02;SOR=0.303;VQSLOD=9.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,45:82:99:1185,0,1101 2 162361899 rs17243975 A G 993.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.248;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.769;HaplotypeScore=3.5707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=-0.352;SB=-5.950e+02;SOR=0.813;VQSLOD=7.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,39:98:99:1022,0,1388 2 162730312 rs35292746 T C 438.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.75;SB=-3.876e+01;SOR=3.767;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:467,36,0 2 162738781 rs41267443 T C 588.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.829;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.63;ReadPosRankSum=0.108;SB=-1.020e+02;SOR=0.468;VQSLOD=9.21;culprit=FS GT:AD:DP:GQ:PL 0/1:11,19:30:99:617,0,310 2 162757381 rs142912867 TAAAAC T 608.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.74;RPA=3,2;RU=AAAAC;ReadPosRankSum=0.755;SB=-1.210e+02;SOR=0.527;STR;VQSLOD=8.18;culprit=FS GT:AD:DP:GQ:PL 0/1:23,11:35:99:646,0,1520 2 162757676 rs6754546 A G 188.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.347;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=0.159;SB=-3.876e+01;SOR=0.293;VQSLOD=9.92;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:217,0,154 2 162807073 rs12614520 T C 204.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-0.393;SB=0.00;SOR=0.818;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:233,0,229 2 162815262 rs12466127 C A 211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=-0.375;SB=-4.176e+01;SOR=0.283;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:240,0,211 2 162821515 rs4233647 G A 1200.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.805;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-0.242;SB=-3.260e+02;SOR=0.814;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:42,46:88:99:1229,0,1070 2 162821644 rs61748243 C T 1477.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.957;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=4.509;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=-1.898;SB=-6.160e+02;SOR=1.119;VQSLOD=6.38;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:65,58:123:99:1506,0,1702 2 162873188 rs2970931 T C 437.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.371;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-0.590;SB=0.00;SOR=0.631;VQSLOD=10.25;culprit=FS GT:AD:DP:GQ:PL 0/1:15,14:29:99:466,0,490 2 162876813 . G GTT 667.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;DP=52;ExcessHet=3.0103;FS=2.931;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-0.854;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.52;RPA=14,16;RU=T;ReadPosRankSum=1.999;SB=-2.010e+02;SOR=1.287;STR;VQSLOD=0.022;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,28:52:99:705,0,396 2 162877028 rs12692646 T A 1236.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.698;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=3.072;HaplotypeScore=4.6635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-0.742;SB=-6.010e+02;SOR=0.324;VQSLOD=9.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,47:86:99:1265,0,1013 2 162879452 rs2302873 T C 265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.44;ReadPosRankSum=1.604;SB=0.00;SOR=1.179;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:294,0,153 2 162890175 rs1558957 T C 389.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=58.80;MQ0=0;MQRankSum=-0.735;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=-0.306;SB=-7.697e+01;SOR=0.165;VQSLOD=0.200;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,15:25:99:418,0,308 2 162890196 . C CA 129.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;DP=16;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=58.11;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.27;RPA=12,13;RU=A;ReadPosRankSum=0.313;SB=-1.773e+00;SOR=2.303;STR;VQSLOD=5.80;culprit=QD GT:AD:DP:GQ:PL 0/1:6,8:15:98:167,0,98 2 162890217 rs7608798 G A 257.98 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.45;ReadPosRankSum=-0.473;SB=-4.176e+01;SOR=1.179;VQSLOD=10.02;culprit=FS GT:AD:DP:GQ:PL 0/1:2,9:11:13:286,0,13 2 162891848 rs6432708 C T 495.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.605;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.654;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=1.200;SB=-2.220e+02;SOR=0.340;VQSLOD=9.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,21:50:99:524,0,800 2 163005674 rs5645 G A 3800.77 PASS AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.9276;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.58;SB=-2.123e+03;SOR=0.708;VQSLOD=5.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,133:133:99:3829,286,0 2 163051415 rs1468916 C T 873.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.95;SB=-8.097e+01;SOR=4.174;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:902,69,0 2 163124051 rs1990760 C T 1570.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.09;SB=-7.450e+02;SOR=1.220;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1599,117,0 2 163128824 rs3747517 T C 1597.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;SB=-8.610e+02;SOR=1.009;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1626,117,0 2 163369083 rs191243509 G C 926.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.563;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=4.187;HaplotypeScore=3.5926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=-0.457;SB=-6.210e+02;SOR=0.534;VQSLOD=6.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,40:85:99:955,0,1230 2 163694878 rs4667768 C G 842.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.440;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.032;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-0.683;SB=-4.190e+02;SOR=0.908;VQSLOD=7.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,34:59:99:871,0,569 2 163694886 rs4667769 G A 771.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.586;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.153;SB=-4.210e+02;SOR=0.675;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:25,32:58:99:800,0,580 2 164466039 rs3833554 AT A 778.73 PASS AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.96;RPA=10,9;RU=T;SB=-1.631e+02;SOR=2.621;STR;VQSLOD=5.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:90:816,90,0 2 164468414 rs2231898 T C 659.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.72;SB=-4.276e+01;SOR=4.514;VQSLOD=8.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:51:688,51,0 2 165349459 rs1051160 G A 240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.162;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=-0.033;SB=0.00;SOR=0.412;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:13,9:22:99:269,0,409 2 165353712 rs8192673 C T 1105.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.346;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=2.749;HaplotypeScore=1.9336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-0.577;SB=-6.170e+02;SOR=0.438;VQSLOD=9.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,42:95:99:1134,0,1513 2 165358655 rs7584035 T A 265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.301;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=-0.870;SB=0.00;SOR=0.350;VQSLOD=10.11;culprit=FS GT:AD:DP:GQ:PL 0/1:16,10:26:99:294,0,548 2 165358672 rs4667463 A G 1328.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;SB=-4.276e+01;SOR=5.136;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1357,114,0 2 165364887 rs8192674 G A 352.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.177;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=0.386;SB=-2.701e+01;SOR=1.096;VQSLOD=8.50;culprit=FS GT:AD:DP:GQ:PL 0/1:19,12:31:99:381,0,515 2 165383661 rs34831964 C T 43.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.57;ReadPosRankSum=-0.948;SB=-6.829e-02;SOR=2.368;VQSLOD=4.88;culprit=QD GT:AD:DP:GQ:PL 0/1:14,3:17:72:72,0,375 2 165424994 rs16849597 T C 839.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.738;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-0.174;SB=-1.670e+02;SOR=0.859;VQSLOD=9.96;culprit=FS GT:AD:DP:GQ:PL 0/1:30,29:59:99:868,0,844 2 165476253 rs61748245 A T 1071.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=3.905;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=1.020;SB=-6.090e+02;SOR=0.384;VQSLOD=9.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,40:98:99:1100,0,1451 2 165544071 rs6753142 T C 300.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.125;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.320;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=-0.124;SB=-1.400e+02;SOR=1.100;VQSLOD=5.79;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:19:99:329,0,215 2 165548569 rs10490694 G A 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.394;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=0.319;SB=0.00;SOR=1.609;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:75:246,0,75 2 165551201 rs7607980 T C 1407.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.870;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=-1.218;SB=-6.200e+02;SOR=0.627;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:38,46:84:99:1436,0,864 2 165557318 rs6712203 C T 127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.685;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.99;ReadPosRankSum=0.217;SB=-3.000e+01;SOR=0.693;VQSLOD=9.86;culprit=QD GT:AD:DP:GQ:PL 0/1:10,6:16:99:156,0,291 2 165793968 rs17353624 G A 903.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.310;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=8.155;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=-0.594;SB=-2.240e+02;SOR=1.938;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 0/1:26,32:58:99:932,0,596 2 165809138 . A ATG 150.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;RPA=9,10;RU=TG;ReadPosRankSum=-0.547;SB=-1.764e+00;SOR=1.371;STR;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:13:99:188,0,259 2 165956938 . C T 528.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.288;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.02;ReadPosRankSum=-0.287;SB=-2.300e+02;SOR=0.735;VQSLOD=8.59;culprit=FS GT:AD:DP:GQ:PL 0/1:11,22:33:99:557,0,266 2 166152185 rs2075704 A G 361.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.41;SB=0.00;SOR=4.804;VQSLOD=7.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:390,30,0 2 166152389 rs17183814 G A 1175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.023;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=8.803;HaplotypeScore=2.5929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-1.395;SB=-4.840e+02;SOR=1.425;VQSLOD=5.77;culprit=FS GT:AD:DP:GQ:PL 0/1:42,46:88:99:1204,0,1178 2 166164215 rs3214603 CA C 417.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.40;RPA=8,7;RU=A;ReadPosRankSum=-0.298;SB=-1.320e+02;SOR=0.527;STR;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:10,19:29:99:455,0,219 2 166170073 rs13025009 A G 777.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.489;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=4.029;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.94;ReadPosRankSum=0.867;SB=-1.030e+02;SOR=1.833;VQSLOD=6.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,24:39:99:806,0,345 2 166170127 rs2121371 T C 2416.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=-1.167e+03;SOR=1.416;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2445,178,0 2 166172317 rs1838846 A G 808.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-3.230e+02;SOR=1.519;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:837,60,0 2 166179650 rs1867864 C T 4265.77 PASS AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-1.762e+03;SOR=1.540;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,135:135:99:4294,322,0 2 166221569 rs3835933 TG T 1498.73 PASS AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.31;RPA=10,9;RU=G;SB=-3.780e+02;SOR=2.252;STR;VQSLOD=5.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:46:99:1536,135,0 2 166229922 rs6432821 T C 2290.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=-8.370e+02;SOR=2.043;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2319,181,0 2 166514165 rs12620509 C G 695.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.677;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.31;ReadPosRankSum=-0.926;SB=-1.090e+02;SOR=0.818;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:15,23:38:99:724,0,459 2 166514594 rs10803800 A G 270.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.134;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=5.969;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=0.032;SB=-5.150e-01;SOR=2.494;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 0/1:14,9:23:99:299,0,380 2 166613841 rs181865244 T C 199.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.575;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.706;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.32;ReadPosRankSum=-0.368;SB=-9.732e-01;SOR=1.445;VQSLOD=6.16;culprit=QD GT:AD:DP:GQ:PL 0/1:16,8:24:99:228,0,496 2 166618127 . G GA 572.75 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.464;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.53;MQ0=0;MQRankSum=0.796;POSITIVE_TRAIN_SITE;QD=20.46;RPA=12,13;RU=A;ReadPosRankSum=-0.483;SB=-8.751e+01;SOR=1.121;STR;VQSLOD=4.04;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:3,25:28:24:610,24,0 2 166621354 rs2113840 T C 2240.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-1.851e+02;SOR=4.514;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:2269,169,0 2 166626606 rs4667836 G A 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=0.464;SB=-1.765e+00;SOR=1.863;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:203,0,204 2 166740578 rs34701755 C T 541.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.492;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.492;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.84;ReadPosRankSum=0.222;SB=-6.900e+01;SOR=1.931;VQSLOD=5.74;culprit=QD GT:AD:DP:GQ:PL 0/1:8,18:26:99:570,0,216 2 166747445 rs146496725 G C 696.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.932;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=-0.721;SB=-4.800e+02;SOR=0.529;VQSLOD=9.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,31:68:99:725,0,955 2 166780911 rs2163648 A G 105.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=0.712;SB=0.00;SOR=0.412;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:134,0,194 2 166788336 rs7592429 T C 5104.77 PASS AC=2;AF=1.00;AN=2;DB;DP=169;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.39;SB=-2.594e+03;SOR=1.213;VQSLOD=6.07;culprit=DP GT:AD:DP:GQ:PL 1/1:0,168:169:99:5133,367,0 2 166797450 rs7592392 C A 348.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.88;SB=0.00;SOR=4.804;VQSLOD=9.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:377,30,0 2 166797646 rs1432273 C T 2740.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.16;SB=-1.458e+03;SOR=1.085;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:2769,205,0 2 166799596 rs13000534 T C 530.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.80;SB=0.00;SOR=5.421;VQSLOD=8.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:559,42,0 2 166799893 rs10930190 G A 794.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=0.00;SOR=6.184;VQSLOD=8.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:823,63,0 2 166810161 rs71892567 G GCCCGCTCA 748.75 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;RPA=4,5;RU=CCCGCTCA;SB=-2.050e+02;SOR=1.863;STR;VQSLOD=4.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,8:10:24:786,24,0 2 166810373 rs1347041 A G 404.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.00;SB=0.00;SOR=4.977;VQSLOD=8.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:433,33,0 2 166866492 rs190366016 A T 167.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-0.944;SB=0.00;SOR=0.473;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:196,0,272 2 166892444 rs34673057 TAAA T 166.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.306;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.26;RPA=15,12;RU=A;ReadPosRankSum=1.220;SB=-4.000e+01;SOR=0.223;STR;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:12,6:18:99:204,0,377 2 166892448 rs114707732 A T 118.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.145;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.096;HaplotypeScore=5.8978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.60;ReadPosRankSum=1.481;SB=-3.200e+01;SOR=0.138;VQSLOD=7.11;culprit=QD GT:AD:DP:GQ:PL 0/1:13,5:18:99:147,0,412 2 166892788 rs2298771 C T 578.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.539;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.90;ReadPosRankSum=-1.440;SB=-3.660e+02;SOR=0.596;VQSLOD=8.51;culprit=QD GT:AD:DP:GQ:PL 0/1:39,26:65:99:607,0,1013 2 166893081 rs7601520 G A 232.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.922;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-0.152;SB=-5.800e+01;SOR=1.329;VQSLOD=7.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,9:20:99:261,0,255 2 166894120 rs66463257 AGTTT A 219.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQ0=0;MQRankSum=0.812;POSITIVE_TRAIN_SITE;QD=13.73;RPA=2,1;RU=GTTT;ReadPosRankSum=1.217;SB=0.00;SOR=0.446;STR;VQSLOD=3.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,5:12:99:257,0,423 2 166894230 rs2020318 T C 1302.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.345;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQ0=0;MQRankSum=1.053;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=0.901;SB=-3.080e+02;SOR=0.620;VQSLOD=2.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,46:95:99:1331,0,1289 2 166896143 rs2126152 T G 567.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.206;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=0.120;SB=-2.870e+02;SOR=0.936;VQSLOD=10.36;culprit=FS GT:AD:DP:GQ:PL 0/1:15,23:38:99:596,0,323 2 166896178 rs490317 C T 226.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.236;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=4.312;HaplotypeScore=1.8910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.40;ReadPosRankSum=0.864;SB=-1.020e+02;SOR=0.184;VQSLOD=9.14;culprit=QD GT:AD:DP:GQ:PL 0/1:16,11:27:99:255,0,480 2 166897864 rs6432860 A G 1004.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7724;MLEAC=1;MLEAF=0.500;MQ=60.12;MQ0=0;MQRankSum=1.116;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=0.223;SB=-5.820e+02;SOR=0.638;VQSLOD=3.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,41:90:99:1033,0,1286 2 166900606 rs6753355 A C 425.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.784;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=5.525;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-0.715;SB=-2.657e-01;SOR=2.376;VQSLOD=5.54;culprit=FS GT:AD:DP:GQ:PL 0/1:27,14:41:99:454,0,798 2 166901717 rs141188608 G A 1131.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.000;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=11.388;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.21;ReadPosRankSum=-0.354;SB=-7.520e+02;SOR=0.212;VQSLOD=4.20;culprit=FS GT:AD:DP:GQ:PL 0/1:53,48:101:99:1160,0,1452 2 166903188 rs538921 A C 1347.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-4.480e+02;SOR=2.059;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1376,102,0 2 166903445 rs7580482 T C 377.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.217;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.203;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=0.272;SB=-1.850e+02;SOR=0.941;VQSLOD=6.72;culprit=QD GT:AD:DP:GQ:PL 0/1:26,16:42:99:406,0,639 2 166904346 rs1461193 G A 779.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.546;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.074;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.378;SB=-3.140e+02;SOR=0.921;VQSLOD=7.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,32:57:99:808,0,511 2 166905480 rs994399 G A 461.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.140;SB=-1.340e+02;SOR=0.784;VQSLOD=9.90;culprit=FS GT:AD:DP:GQ:PL 0/1:13,18:31:99:490,0,369 2 166909559 rs3812719 C A 191.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.881;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=0.651;SB=-8.097e+01;SOR=0.197;VQSLOD=10.20;culprit=SOR GT:AD:DP:GQ:PL 0/1:4,8:12:99:220,0,108 2 166915014 rs8191987 A G 334.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.598;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.92;ReadPosRankSum=0.652;SB=0.00;SOR=1.244;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:6,10:16:99:363,0,175 2 166930214 rs566839 T A 785.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.74;SB=-1.971e+02;SOR=2.494;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:814,60,0 2 167060449 rs10180721 A T 618.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.47;SB=-1.861e+02;SOR=2.200;VQSLOD=5.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:48:647,48,0 2 167060980 rs77944059 GAAAC G 564.74 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.62;RPA=2,1;RU=AAAC;SB=-1.865e+02;SOR=1.609;STR;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:602,30,0 2 167085079 rs58595486 GTT G 471.74 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;RPA=4,2;RU=T;SB=0.00;SOR=4.804;STR;VQSLOD=8.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:509,30,0 2 167085124 rs10199799 T G 714.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-8.297e+01;SOR=3.716;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:743,54,0 2 167085141 rs58519838 CTT C 1376.73 PASS AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.53;SB=-2.423e+02;SOR=3.014;VQSLOD=4.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:75:1414,75,0 2 167090042 rs722204 G A 1197.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.74;SB=-1.085e+02;SOR=4.174;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:93:1226,93,0 2 167099158 rs6746030 A G 1156.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.44;SB=-4.340e+02;SOR=1.670;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:87:1185,87,0 2 167137119 rs6432893 G A 3090.77 PASS AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.60;SB=-1.813e+03;SOR=0.970;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,112:112:99:3119,229,0 2 167144974 rs6747673 A T 463.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-4.076e+01;SOR=3.912;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:492,39,0 2 167144995 rs13402180 T C 803.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.95;SB=-1.255e+02;SOR=3.352;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:63:832,63,0 2 167145142 rs13414203 A G 1596.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.01;SB=-8.040e+02;SOR=1.238;VQSLOD=5.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1625,117,0 2 167149693 rs7588632 G A 1057.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-3.040e+02;SOR=2.303;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:81:1086,81,0 2 167162119 rs140380560 T C 66.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=4.393;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.07;ReadPosRankSum=-1.489;SB=-4.276e+01;SOR=0.061;VQSLOD=8.37;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:95:95,0,237 2 167162277 rs4429487 G A 2201.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.23;SB=-1.327e+03;SOR=0.976;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2230,160,0 2 167163043 rs9646771 T C 3081.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=-1.842e+03;SOR=0.693;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3110,229,0 2 167163199 rs9646772 A T 865.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;SB=0.00;SOR=6.439;VQSLOD=7.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:72:894,72,0 2 167163372 . T C 625.77 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=0.00;SOR=5.670;VQSLOD=5.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:654,48,0 2 167163373 . C A 640.77 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.31;SB=0.00;SOR=5.784;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:669,51,0 2 167163663 rs4447616 C T 1101.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.43;SB=-4.000e+02;SOR=1.681;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:84:1130,84,0 2 167168093 rs6432901 C T 3195.80 PASS AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4034;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.03;SB=-1.383e+03;SOR=1.781;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,114:115:99:3224,247,0 2 167279922 rs6738031 C A 223.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.119;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=4.619;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.73;ReadPosRankSum=-0.743;SB=-1.321e+01;SOR=2.179;VQSLOD=6.10;culprit=FS GT:AD:DP:GQ:PL 0/1:15,8:23:99:252,0,403 2 167322522 rs7593452 G A 552.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.708;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.06;ReadPosRankSum=-1.492;SB=-1.680e+02;SOR=1.432;VQSLOD=5.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,19:29:99:581,0,225 2 167327064 rs12992062 A G 185.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.488;SB=-1.765e+00;SOR=1.609;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:214,0,207 2 167328750 rs2293567 C T 328.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.857;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.26;ReadPosRankSum=0.046;SB=-3.101e+01;SOR=1.244;VQSLOD=10.36;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:357,0,196 2 167334085 rs7565062 G T 699.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.609;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=-1.388;SB=-3.410e+02;SOR=0.925;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:22,28:50:99:728,0,639 2 167759948 rs7599152 C T 1789.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.34;SB=-6.650e+02;SOR=1.903;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1818,135,0 2 167760451 rs5836125 AG A 2338.73 PASS AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-1.435e+02;SOR=5.018;VQSLOD=5.20;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,51:52:99:2376,154,0 2 168096254 rs79788542 T C 219.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.31;ReadPosRankSum=1.025;SB=0.00;SOR=1.022;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:248,0,158 2 168570749 rs12987185 G A 950.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.494;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.926;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=1.606;SB=-5.510e+02;SOR=0.534;VQSLOD=8.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,37:74:99:979,0,1000 2 168570776 rs7577697 T C 862.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.130;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.853;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=1.608;SB=-5.210e+02;SOR=0.927;VQSLOD=6.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,36:76:99:891,0,1014 2 168571564 rs34416992 A G 167.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.790;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=-1.200;POSITIVE_TRAIN_SITE;QD=8.83;ReadPosRankSum=-1.185;SB=-6.700e+01;SOR=0.495;VQSLOD=3.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,7:19:99:196,0,300 2 168572093 rs10168562 G T 761.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.30;SB=-2.740e+02;SOR=1.981;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:57:790,57,0 2 168572098 rs10192010 A G 824.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=-3.190e+02;SOR=1.863;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:60:853,60,0 2 168572438 rs4667969 G A 1384.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.70;SB=-9.570e+02;SOR=0.773;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1413,102,0 2 168986154 rs925846 A G 428.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.568;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.252;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=-0.490;SB=-2.410e+02;SOR=0.446;VQSLOD=9.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,18:40:99:457,0,583 2 168996775 rs2278785 T C 494.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.494;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.783;SB=-1.490e+02;SOR=0.804;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:24,19:43:99:523,0,598 2 168997097 rs2278784 A G 421.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.408;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.660;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=-0.164;SB=-2.100e+02;SOR=0.977;VQSLOD=6.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,17:45:99:450,0,752 2 169024141 rs13403999 A G 312.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.776;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=-0.159;SB=-1.710e+02;SOR=0.892;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:7,13:20:99:341,0,133 2 169088635 rs10177444 G A 186.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=-0.285;SB=-1.300e+02;SOR=0.892;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:215,0,177 2 169418006 rs6433073 C A 325.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.15;SB=-1.185e+02;SOR=1.981;VQSLOD=5.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:354,27,0 2 169487610 rs11347055 GT G 344.19 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;DB;DP=25;ExcessHet=3.0103;FS=6.889;MLEAC=1;MLEAF=0.500;MQ=60.43;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.12;RPA=11,10;RU=T;ReadPosRankSum=1.397;SB=-2.105e+01;SOR=4.294;STR;VQSLOD=4.83;culprit=FS GT:AD:DP:GQ:PL 0/1:2,17:25:4:380,0,4 2 169571414 rs13014488 G T 1154.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-4.176e+01;SOR=5.486;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:90:1183,90,0 2 169674655 rs830026 T C 741.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;SB=-3.520e+02;SOR=1.445;VQSLOD=6.53;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,26:26:57:770,57,0 2 169674663 rs830025 A T 737.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.51;SB=-3.540e+02;SOR=1.358;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:57:766,57,0 2 169674764 rs830024 C G 409.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.565;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=0.197;SB=-1.680e+02;SOR=0.582;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:11,16:27:99:438,0,259 2 169674806 rs2461389 G C 154.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.568;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=0.196;SB=-3.500e+01;SOR=0.399;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:183,0,318 2 169690729 rs522893 T C 1479.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=-5.720e+02;SOR=1.863;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1508,108,0 2 169707428 rs540652 C T 1845.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.84;SB=-8.620e+02;SOR=1.402;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:1874,138,0 2 169707552 rs488621 A G 3490.77 PASS AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-2.052e+03;SOR=0.884;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,112:112:99:3519,265,0 2 169712115 . C CA 612.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;DP=54;ExcessHet=3.0103;FS=2.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.94;RPA=13,14;RU=A;ReadPosRankSum=0.428;SB=-8.617e+01;SOR=0.253;STR;VQSLOD=1.22;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:8,33:54:59:650,0,59 2 169713084 rs11385898 T TA 1968.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.446;DB;DP=82;ExcessHet=3.0103;FS=2.916;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.57;RPA=11,12;RU=A;ReadPosRankSum=0.192;SB=-6.040e+02;SOR=1.874;STR;VQSLOD=5.13;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,75:82:99:2006,176,0 2 169717541 rs2632372 T C 1963.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.68;SB=-6.360e+02;SOR=2.231;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:1992,156,0 2 169717624 rs2685800 C T 684.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;SB=0.00;SOR=5.892;VQSLOD=8.79;culprit=DP GT:AD:DP:GQ:PL 1/1:0,18:18:54:713,54,0 2 169721377 rs479661 G A 1686.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.44;SB=-5.950e+02;SOR=1.893;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1715,129,0 2 169728069 rs5836210 GAAA G 670.73 PASS AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.12;RPA=14,11;RU=A;SB=-1.912e+02;SOR=1.739;STR;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:21:50:708,50,0 2 169746032 . T G 700.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.74;ReadPosRankSum=0.506;SB=-2.110e+02;SOR=0.843;VQSLOD=8.18;culprit=FS GT:AD:DP:GQ:PL 0/1:26,29:55:99:729,0,672 2 169763148 rs560887 T C 1678.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-7.610e+02;SOR=1.262;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1707,129,0 2 169780366 rs579275 T C 1129.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.23;SB=-8.197e+01;SOR=4.804;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:35:96:1158,96,0 2 169789016 rs497692 T C 1871.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.53;SB=-1.089e+03;SOR=1.179;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:1900,141,0 2 169801488 rs853789 A G 1353.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=-2.431e+02;SOR=3.202;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:40:99:1382,102,0 2 169814347 rs853773 A G 544.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=0.00;SOR=4.407;VQSLOD=7.63;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,18:18:48:573,48,0 2 169814655 rs853772 G T 3124.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-1.147e+03;SOR=1.659;VQSLOD=7.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:3153,241,0 2 169820618 rs4148796 A G 177.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.117;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.538;HaplotypeScore=1.8910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.13;ReadPosRankSum=0.051;SB=-5.150e-01;SOR=1.270;VQSLOD=6.16;culprit=QD GT:AD:DP:GQ:PL 0/1:22,7:29:99:206,0,686 2 169820619 rs4148795 T C 180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.201;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=2.615;HaplotypeScore=1.8910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.03;ReadPosRankSum=0.221;SB=-2.657e-01;SOR=1.609;VQSLOD=4.95;culprit=QD GT:AD:DP:GQ:PL 0/1:23,7:30:99:209,0,675 2 169824739 . T TA 162.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.652;DP=20;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.14;RPA=2,3;RU=A;ReadPosRankSum=-0.190;SB=-3.177e+01;SOR=0.132;STR;VQSLOD=7.89;culprit=QD GT:AD:DP:GQ:PL 0/1:11,9:20:99:200,0,393 2 169824743 . C A 213.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.72;ReadPosRankSum=0.368;SB=-3.401e+01;SOR=0.392;VQSLOD=8.08;culprit=FS GT:AD:DP:GQ:PL 0/1:13,9:22:99:242,0,416 2 169824749 . C A 263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.622;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.47;ReadPosRankSum=-0.062;SB=-3.200e+01;SOR=0.465;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 0/1:13,10:23:99:292,0,425 2 169826877 rs2193831 C T 703.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.578;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=1.743;SB=-2.540e+02;SOR=0.553;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:29,29:58:99:732,0,701 2 169828228 rs55868238 AT A 165.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DB;DP=14;ExcessHet=3.0103;FS=5.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=2.103;SB=-5.150e-01;SOR=2.546;VQSLOD=5.14;culprit=FS GT:AD:DP:GQ:PL 0/1:9,5:14:99:203,0,409 2 169828277 rs2241341 G A 411.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.852;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.810;HaplotypeScore=4.3102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=0.639;SB=-1.730e+02;SOR=0.317;VQSLOD=9.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,15:25:99:440,0,272 2 169828325 rs2241340 A G 489.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.977;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.931;HaplotypeScore=2.6732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=2.299;SB=-2.400e+02;SOR=0.323;VQSLOD=9.58;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:22,18:41:99:518,0,604 2 169830051 rs2389605 C T 199.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=-0.281;SB=0.00;SOR=0.582;VQSLOD=10.18;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:228,0,274 2 169830155 rs2287623 G A 860.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.744;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.943;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=-2.484;SB=-2.820e+02;SOR=1.002;VQSLOD=7.04;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:44,38:82:99:889,0,1309 2 169830328 rs2287622 A G 1389.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.094;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=1.798;HaplotypeScore=4.4831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-1.371;SB=-4.640e+02;SOR=0.965;VQSLOD=7.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,49:96:99:1418,0,1229 2 169830515 rs2287621 G A 500.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=-3.070e+02;SOR=0.804;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:39:529,39,0 2 169832752 rs4148785 C T 236.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.053;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=2.317;SB=-1.765e+00;SOR=2.030;VQSLOD=5.18;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,8:15:99:265,0,189 2 169832761 rs4148784 G C 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.350;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=1.553;SB=-2.801e+01;SOR=1.508;VQSLOD=6.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,10:19:99:317,0,246 2 169832965 rs77540371 C T 716.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.956;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.05;ReadPosRankSum=-0.134;SB=-3.350e+02;SOR=0.650;VQSLOD=8.32;culprit=QD GT:AD:DP:GQ:PL 0/1:62,27:89:99:745,0,1840 2 169842809 rs2287618 T C 659.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.72;SB=0.00;SOR=5.994;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:688,57,0 2 169842824 . C T 189.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.985;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-0.586;SB=0.00;SOR=0.425;VQSLOD=8.45;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:218,0,307 2 169847203 rs4148780 T C 228.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-0.223;SB=0.00;SOR=0.512;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:10,8:18:99:257,0,338 2 169869901 rs4148777 A G 1504.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.482;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.30;ReadPosRankSum=-0.332;SB=-8.980e+02;SOR=0.650;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:31,56:87:99:1533,0,794 2 169870882 rs4148776 A G 1363.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.781;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-1.260;SB=-8.190e+02;SOR=0.521;VQSLOD=9.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,54:97:99:1392,0,1121 2 169873205 rs10199694 G A 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.843;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=-0.492;SB=-6.400e+01;SOR=1.179;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:241,0,327 2 169874712 rs4148772 C T 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.23;ReadPosRankSum=1.524;SB=0.00;SOR=1.022;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:247,0,126 2 169995581 rs35472707 C T 700.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.434;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=0.387;SB=-3.700e+02;SOR=0.776;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:28,27:55:99:729,0,752 2 169997051 rs990626 G A 1375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=0.638;SB=-5.180e+02;SOR=0.737;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 0/1:43,51:95:99:1404,0,1197 2 170003432 rs4667591 T G 3608.77 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=-2.024e+03;SOR=1.009;VQSLOD=7.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,114:114:99:3637,262,0 2 170003638 rs4667592 G A 377.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=0.00;SOR=4.977;VQSLOD=8.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:406,33,0 2 170010985 rs2075252 T C 2108.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-1.164e+03;SOR=0.844;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2137,157,0 2 170032989 rs2229265 C T 5794.77 PASS AC=2;AF=1.00;AN=2;DB;DP=203;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2936;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.69;SB=-3.459e+03;SOR=1.007;VQSLOD=3.57;culprit=DP GT:AD:DP:GQ:PL 1/1:0,202:203:99:5823,430,0 2 170038235 rs67061649 CAGACTGCATTCTGAATTCTTTTCTG C 1936.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.20;SB=0.00;SOR=4.174;VQSLOD=7.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,7:13:21:1974,21,0 2 170038571 rs17848180 C T 263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.062;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=-1.087;SB=0.00;SOR=0.693;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:292,0,303 2 170055264 rs72876208 C T 779.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.341;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=0.301;SB=-4.910e+02;SOR=0.350;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 0/1:18,31:49:99:808,0,532 2 170059516 rs111811756 C G 711.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.891;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=0.577;SB=-3.876e+01;SOR=0.540;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:12,22:34:99:740,0,338 2 170059537 rs6709670 A G 154.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.439;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.74;ReadPosRankSum=-0.495;SB=0.00;SOR=0.197;VQSLOD=8.79;culprit=QD GT:AD:DP:GQ:PL 0/1:14,6:20:99:183,0,496 2 170077165 rs3815572 C T 369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;SB=0.00;SOR=4.977;VQSLOD=8.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:398,33,0 2 170082013 rs2075246 A G 1732.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.50;SB=-7.070e+02;SOR=1.609;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1761,126,0 2 170088046 rs4668128 G A 731.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.26;SB=-1.513e+02;SOR=2.737;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:760,60,0 2 170088351 rs2302694 G A 1204.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.324;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.190;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=0.354;SB=-6.890e+02;SOR=0.407;VQSLOD=10.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,46:68:99:1233,0,566 2 170088477 rs2302693 T C 1237.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.51;SB=-5.930e+02;SOR=1.559;VQSLOD=6.86;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,45:45:90:1266,90,0 2 170088506 rs2302692 T C 180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.095;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.48;ReadPosRankSum=-1.666;SB=-8.400e+01;SOR=0.473;VQSLOD=9.29;culprit=QD GT:AD:DP:GQ:PL 0/1:23,10:33:99:209,0,619 2 170089824 rs2239596 T C 259.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.833;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=0.000;SB=-6.800e+01;SOR=0.818;VQSLOD=10.46;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:288,0,258 2 170092395 rs2229267 A G 1498.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.8918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-0.930;SB=-8.920e+02;SOR=0.659;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:55,60:116:99:1527,0,1356 2 170096018 rs830973 G A 274.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.001;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=1.081;SB=-6.300e+01;SOR=0.829;VQSLOD=9.95;culprit=FS GT:AD:DP:GQ:PL 0/1:14,12:26:99:303,0,364 2 170099446 rs831041 T G 2528.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.01;SB=-9.880e+02;SOR=1.700;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2557,184,0 2 170099473 rs831042 T C 2699.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=-1.292e+03;SOR=1.105;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2728,202,0 2 170099895 rs2075255 A C 1415.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.763;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.89;ReadPosRankSum=0.000;SB=-4.680e+02;SOR=0.859;VQSLOD=8.40;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,48:49:99:1444,105,0 2 170099899 rs2075254 G A 1539.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.05;SB=-5.860e+02;SOR=1.938;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1568,114,0 2 170103336 rs831043 T C 4317.77 PASS AC=2;AF=1.00;AN=2;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-2.373e+03;SOR=1.058;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,145:145:99:4346,331,0 2 170103351 rs2075249 G T 1731.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.421;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=4.365;HaplotypeScore=2.9988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=-0.961;SB=-1.021e+03;SOR=0.394;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:61,64:125:99:1760,0,1614 2 170112478 . T TA 695.73 PASS AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;RPA=1,2;RU=A;SB=0.00;SOR=5.784;STR;VQSLOD=7.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:733,51,0 2 170115588 rs2241190 T C 3125.77 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.42;SB=-1.723e+03;SOR=0.931;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,110:110:99:3154,232,0 2 170115672 rs33954745 A G 1240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.919;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=0.445;SB=-6.200e+02;SOR=0.638;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 0/1:62,45:107:99:1269,0,1533 2 170129528 rs830994 G A 1194.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.302;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=0.426;SB=-7.850e+02;SOR=0.662;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:33,53:86:99:1223,0,963 2 170129636 rs830995 A G 439.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.753;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-1.947;SB=-1.080e+02;SOR=0.770;VQSLOD=9.94;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:16,17:33:99:468,0,403 2 170134191 rs831003 G C 484.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.142;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=-0.323;SB=0.00;SOR=0.836;VQSLOD=9.34;culprit=FS GT:AD:DP:GQ:PL 0/1:13,15:28:99:513,0,450 2 170139346 rs831010 C T 1059.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.131;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=-1.083;SB=-3.520e+02;SOR=0.606;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:29,40:70:99:1088,0,748 2 170139629 rs72878449 A G 105.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-0.906;SB=-3.377e+01;SOR=0.160;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:92:134,0,92 2 170145426 rs831017 G A 622.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.31;SB=-2.291e+02;SOR=1.931;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:51:651,51,0 2 170150671 rs2229266 G A 591.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.90;SB=-4.270e+02;SOR=0.693;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:45:620,45,0 2 170177446 rs72880427 C T 416.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.771;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.895;SB=-3.500e+01;SOR=0.765;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:14,15:29:99:445,0,387 2 170218816 rs1559013 T C 539.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-1.373e+02;SOR=2.179;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:568,42,0 2 170218847 rs1559014 C G 584.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-2.790e+02;SOR=1.292;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:45:613,45,0 2 170336024 rs1879466 G C 1679.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.274;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=3.145;HaplotypeScore=1.9865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-0.488;SB=-8.530e+02;SOR=1.002;VQSLOD=7.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:67,66:133:99:1708,0,1848 2 170336286 rs73971618 G A 64.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.093;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.60;ReadPosRankSum=-1.331;SB=-1.765e+00;SOR=0.412;VQSLOD=8.87;culprit=QD GT:AD:DP:GQ:PL 0/1:14,4:18:93:93,0,516 2 170386239 . C A 58.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.90;ReadPosRankSum=1.349;SB=-1.766e+00;SOR=0.582;VQSLOD=7.62;culprit=QD GT:AD:DP:GQ:PL 0/1:9,3:12:87:87,0,296 2 170403030 rs2253680 T C 690.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.343;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=1.870;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.85;ReadPosRankSum=0.223;SB=-3.170e+02;SOR=0.977;VQSLOD=7.00;culprit=QD GT:AD:DP:GQ:PL 0/1:57,31:88:99:719,0,1488 2 170403106 rs16857030 G A 383.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.039;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.255;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.00;ReadPosRankSum=-0.634;SB=-1.880e+02;SOR=0.442;VQSLOD=8.87;culprit=QD GT:AD:DP:GQ:PL 0/1:33,15:48:99:412,0,957 2 170411693 rs2683455 T C 183.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.174;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.19;ReadPosRankSum=0.723;SB=-1.030e+02;SOR=0.446;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:11,9:20:99:212,0,289 2 170441001 rs2276611 G A 1374.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.627;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=4.298;HaplotypeScore=9.5463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=-0.152;SB=-6.380e+02;SOR=1.077;VQSLOD=7.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:74,54:129:99:1403,0,1998 2 170463547 rs72623200 T C 1792.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.265;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=2.330;HaplotypeScore=12.3064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=-1.232;SB=-1.139e+03;SOR=0.474;VQSLOD=8.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,69:124:99:1821,0,1437 2 170488454 rs3754921 A G 1114.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-4.830e+02;SOR=1.670;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:81:1143,81,0 2 170489970 rs2305177 A G 964.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.491;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=2.019;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=0.466;SB=-4.440e+02;SOR=1.037;VQSLOD=7.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,41:71:99:993,0,730 2 170492567 rs2290007 A G 581.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.22;SB=-4.276e+01;SOR=4.294;VQSLOD=7.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:610,48,0 2 170492584 rs2290008 T C 733.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-1.245e+02;SOR=3.352;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:762,57,0 2 170493863 rs8207 A G 42.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.38;ReadPosRankSum=0.178;SB=-1.321e+01;SOR=1.022;VQSLOD=7.84;culprit=QD GT:AD:DP:GQ:PL 0/1:15,3:18:71:71,0,473 2 170502401 rs17544587 G A 748.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.793;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=3.796;HaplotypeScore=3.4618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.519;SB=-4.310e+02;SOR=0.314;VQSLOD=10.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,29:57:99:777,0,723 2 170502415 rs114609276 T C 881.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.361;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=8.261;HaplotypeScore=3.4916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=0.448;SB=-5.680e+02;SOR=0.327;VQSLOD=5.65;culprit=FS GT:AD:DP:GQ:PL 0/1:33,35:68:99:910,0,866 2 170505684 rs3213946 G A 614.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.699;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.341;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=1.942;SB=-3.080e+02;SOR=0.495;VQSLOD=8.66;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:13,24:37:99:643,0,301 2 170550839 . A G 1497.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.879;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.709;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.14;ReadPosRankSum=-0.091;SB=-8.110e+02;SOR=0.573;VQSLOD=7.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,56:114:99:1526,0,1550 2 170550956 rs1446901 A C 1307.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.41;SB=-8.297e+01;SOR=5.031;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1336,108,0 2 170558293 rs200739872 AAAAAG A 283.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;DB;DP=17;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.63;MQ0=0;MQRankSum=1.678;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=-1.635;SB=-5.150e-01;SOR=1.911;VQSLOD=0.022;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,5:17:99:321,0,839 2 170605981 rs4667607 C T 1563.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.51;SB=-6.310e+02;SOR=1.654;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1592,120,0 2 170606293 . T TA 744.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;DP=80;ExcessHet=3.0103;FS=0.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.80;RPA=7,8;RU=A;ReadPosRankSum=-1.866;SB=-2.770e+02;SOR=0.821;STR;VQSLOD=5.46;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:43,33:80:99:782,0,1004 2 170606440 . TAC T 290.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=1.230;QD=16.15;RPA=5,4;RU=AC;ReadPosRankSum=0.267;SB=-5.664e+01;SOR=0.976;STR;VQSLOD=2.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,10:24:99:328,0,176 2 170606450 rs79825047 C T 315.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.587;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=25.1292;MLEAC=1;MLEAF=0.500;MQ=59.31;MQ0=0;MQRankSum=-0.655;QD=16.62;ReadPosRankSum=-0.465;SB=-1.185e+02;SOR=0.412;VQSLOD=2.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,12:19:99:344,0,199 2 170606467 rs28590155 A G 143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.79;MQ0=0;MQRankSum=-0.748;QD=13.07;ReadPosRankSum=2.260;SB=0.00;SOR=0.551;VQSLOD=1.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,5:11:99:172,0,165 2 170606472 . T C 112.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.139;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.79;MQ0=0;MQRankSum=-0.748;QD=10.25;ReadPosRankSum=2.260;SB=0.00;SOR=0.551;VQSLOD=1.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,5:11:99:141,0,191 2 170606473 . A G 140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.79;MQ0=0;MQRankSum=-0.748;QD=12.80;ReadPosRankSum=2.260;SB=0.00;SOR=0.551;VQSLOD=1.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,5:11:99:169,0,195 2 170606475 . A T 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.79;MQ0=0;MQRankSum=-0.748;QD=12.25;ReadPosRankSum=2.260;SB=0.00;SOR=0.551;VQSLOD=1.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,5:11:99:163,0,186 2 170629766 rs78386341 A C 670.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=1.582;SB=-1.700e+02;SOR=0.490;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:25,25:50:99:699,0,729 2 170632896 rs10930376 T C 274.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.808;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=-0.131;SB=-1.005e+02;SOR=0.184;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 0/1:4,11:15:85:303,0,85 2 170633023 . T TA 645.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;DP=54;ExcessHet=3.0103;FS=3.966;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=-0.708;POSITIVE_TRAIN_SITE;QD=12.18;RPA=1,2;RU=A;ReadPosRankSum=0.789;SB=-2.480e+02;SOR=1.292;STR;VQSLOD=0.160;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,19:54:99:683,0,1324 2 170633067 rs6745191 G T 392.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.283;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.22;MQ0=0;MQRankSum=-0.676;POSITIVE_TRAIN_SITE;QD=7.86;ReadPosRankSum=0.871;SB=-2.390e+02;SOR=0.629;VQSLOD=3.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,17:50:99:421,0,829 2 170633103 rs11325477 GA G 1619.73 PASS AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;RPA=2,1;RU=A;SB=-5.350e+02;SOR=1.609;STR;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:38:99:1657,111,0 2 170665108 rs2556352 G A 136.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.464;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.20;ReadPosRankSum=-0.834;SB=0.00;SOR=0.223;VQSLOD=9.64;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:165,0,450 2 170668813 rs3731674 C T 217.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.666;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=-0.356;SB=0.00;SOR=0.512;VQSLOD=8.97;culprit=FS GT:AD:DP:GQ:PL 0/1:10,8:18:99:246,0,355 2 170677492 rs2162516 A G 114.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=-2.260;SB=0.00;SOR=0.551;VQSLOD=9.05;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:6,5:11:99:143,0,206 2 170684224 rs2303555 C T 95.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=4.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.84;ReadPosRankSum=-1.048;SB=-4.176e+01;SOR=0.061;VQSLOD=8.67;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:14:99:124,0,318 2 170684689 . A T 60.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.668;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.7396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.124;SB=0.00;SOR=0.117;VQSLOD=7.86;culprit=QD GT:AD:DP:GQ:PL 0/1:16,5:21:89:89,0,529 2 170762487 rs10171268 C T 1493.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.79;SB=-1.135e+02;SOR=4.565;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1522,117,0 2 170762566 rs10194785 A T 1121.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=1.847;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-0.056;SB=-5.030e+02;SOR=0.979;VQSLOD=8.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,43:82:99:1150,0,1010 2 170782037 rs1461958 C T 840.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.83;SB=0.00;SOR=6.273;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:869,66,0 2 170782338 rs13016918 C T 424.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.686;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=-0.851;SB=-3.200e+01;SOR=1.230;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:9,14:23:99:453,0,239 2 170784004 rs6723655 T C 781.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.202;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=9.494;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=1.193;SB=-2.657e-01;SOR=3.340;VQSLOD=5.00;culprit=FS GT:AD:DP:GQ:PL 0/1:26,23:49:99:810,0,715 2 170784049 rs898851 G A 737.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.22;SB=0.00;SOR=6.091;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:766,60,0 2 170785484 rs10165565 G A 374.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.194;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=-0.674;SB=-3.000e+01;SOR=0.648;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:23,14:37:99:403,0,737 2 170821010 rs10197085 A G 1028.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.315;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.857;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.289;SB=-5.940e+02;SOR=0.829;VQSLOD=7.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,40:80:99:1057,0,1020 2 170850738 rs1461959 T C 1237.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.50;SB=0.00;SOR=6.994;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:93:1266,93,0 2 170870595 rs10497357 T C 1036.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.813;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=2.577;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=0.807;SB=-3.240e+02;SOR=0.326;VQSLOD=10.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,38:71:99:1065,0,860 2 170871950 rs16857446 T G 645.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.015;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.421;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-0.680;SB=-1.790e+02;SOR=0.422;VQSLOD=9.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,24:50:99:674,0,777 2 170871976 rs13028230 A G 1012.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.26;SB=-4.276e+01;SOR=5.211;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:78:1041,78,0 2 170911950 rs6741614 T C 369.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.025;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.491;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=-0.547;SB=-8.100e+01;SOR=1.061;VQSLOD=7.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,13:35:99:398,0,556 2 170917648 rs10203212 A G 589.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.339;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.380;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=-0.402;SB=-2.100e+02;SOR=1.013;VQSLOD=7.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,22:37:99:618,0,381 2 170917983 rs35032863 CT C 889.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.734;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.22;RPA=12,11;RU=T;ReadPosRankSum=-1.002;SB=-1.191e+02;SOR=1.217;STR;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 1/1:3,41:51:49:927,49,0 2 170929880 rs10202446 G A 557.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.254;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=5.659;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=-0.124;SB=-2.310e+02;SOR=0.184;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:16,24:40:99:586,0,479 2 171055942 rs35521414 T A 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.632;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=4.821;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-1.142;SB=-1.280e+02;SOR=0.097;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:15,15:30:99:375,0,453 2 171070810 rs67994603 G T 465.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.512;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=0.345;SB=-9.900e+01;SOR=0.527;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:24,16:40:99:494,0,671 2 171070850 rs13423313 G T 857.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.599;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.146;HaplotypeScore=3.5124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.729;SB=-1.730e+02;SOR=0.929;VQSLOD=7.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,31:65:99:886,0,997 2 171070912 rs13385825 T C 1608.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.648;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=2.474;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-1.329;SB=-7.800e+02;SOR=0.481;VQSLOD=8.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,66:119:99:1637,0,1432 2 171071369 rs4667626 C T 3385.77 PASS AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=-1.627e+03;SOR=1.290;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,116:116:99:3414,250,0 2 171073843 . C A 828.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.482;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.37;ReadPosRankSum=1.487;SB=-4.620e+02;SOR=0.643;VQSLOD=7.74;culprit=FS GT:AD:DP:GQ:PL 0/1:34,33:67:99:857,0,902 2 171073887 rs2161916 G A 956.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=1.986;HaplotypeScore=2.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=0.066;SB=-5.270e+02;SOR=0.883;VQSLOD=7.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,36:69:99:985,0,741 2 171074008 rs6713360 G C 508.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=0.365;SB=-1.720e+02;SOR=0.627;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:19,18:37:99:537,0,494 2 171092445 rs1035625 A G 343.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.492;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.173;SB=-1.765e+00;SOR=1.179;VQSLOD=9.00;culprit=FS GT:AD:DP:GQ:PL 0/1:16,11:27:99:372,0,473 2 171092632 . CTT C 1453.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;DP=84;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.95;RPA=3,1;RU=T;ReadPosRankSum=-0.231;SB=-7.420e+02;SOR=0.462;STR;VQSLOD=8.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,33:84:99:1491,0,2151 2 171192084 rs12466203 G A 831.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.906;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=5.082;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-0.196;SB=-2.000e+02;SOR=1.342;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 0/1:42,32:74:99:860,0,1066 2 171225841 rs4668246 A G 1213.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=0.743;SB=-6.310e+02;SOR=0.713;VQSLOD=9.00;culprit=FS GT:AD:DP:GQ:PL 0/1:69,48:117:99:1242,0,1676 2 171256597 rs7561268 A C 858.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.488;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.397;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=-0.528;SB=-1.390e+02;SOR=1.093;VQSLOD=7.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,30:57:99:887,0,751 2 171257687 rs7608448 T C 225.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=0.210;SB=0.00;SOR=1.609;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:86:254,0,86 2 171260708 rs10930425 C A 1458.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.71;SB=-2.970e+02;SOR=2.985;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1487,117,0 2 171260787 rs6736609 G A 3322.77 PASS AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7655;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-1.435e+03;SOR=1.546;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,109:109:99:3351,259,0 2 171260797 rs33962844 A G 1371.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.058;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=3.671;HaplotypeScore=2.6640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-0.341;SB=-7.400e+02;SOR=0.392;VQSLOD=8.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,52:112:99:1400,0,1624 2 171260820 rs6751520 T C 3871.77 PASS AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-1.993e+03;SOR=1.207;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,122:122:99:3900,283,0 2 171261021 rs6751781 T G 1696.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-4.280e+02;SOR=2.794;VQSLOD=5.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1725,126,0 2 171264482 rs1561393 G C 162.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=0.930;SB=0.00;SOR=1.085;VQSLOD=10.23;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:191,0,115 2 171300648 rs4667639 T A 957.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.468;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-1.926;SB=-3.220e+02;SOR=0.652;VQSLOD=8.49;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:43,38:81:99:986,0,1209 2 171319997 rs12477518 A C 1202.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=0.552;SB=-7.210e+02;SOR=0.682;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:54,49:103:99:1231,0,1431 2 171323116 . G T 1454.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=0.814;SB=-9.470e+02;SOR=0.762;VQSLOD=8.33;culprit=FS GT:AD:DP:GQ:PL 0/1:62,58:120:99:1483,0,1457 2 171323117 . A C 1449.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.18;ReadPosRankSum=0.346;SB=-9.180e+02;SOR=0.726;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 0/1:60,59:119:99:1478,0,1444 2 171323280 rs67549561 CTGTGTCCTAAGAT C 2606.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQ0=0;MQRankSum=1.107;QD=15.83;ReadPosRankSum=0.263;SB=-6.160e+02;SOR=0.576;VQSLOD=2.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,18:42:99:2644,0,3050 2 171323328 rs4359605 T C 389.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.172;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=2.218;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-3.320;SB=-1.100e+02;SOR=0.195;VQSLOD=8.13;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:14,15:29:99:418,0,397 2 171355198 rs6761297 A G 2929.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-1.299e+03;SOR=1.356;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2958,214,0 2 171355329 rs6733198 G C 4123.77 PASS AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=-2.353e+03;SOR=0.945;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,140:140:99:4152,295,0 2 171355426 rs6748052 T C 2186.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.64;SB=-4.100e+02;SOR=2.904;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2215,163,0 2 171356274 rs10185178 G A 3097.77 PASS AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.70;SB=-1.908e+03;SOR=0.877;VQSLOD=5.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,116:116:99:3126,223,0 2 171358029 . T C 62.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.920;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-1.142;SB=-6.400e+01;SOR=0.105;VQSLOD=6.54;culprit=QD GT:AD:DP:GQ:PL 0/1:8,5:13:91:91,0,250 2 171358044 rs10191689 G A 329.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.811;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=6.117;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=-0.606;SB=-6.800e+01;SOR=2.670;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 0/1:4,12:16:87:358,0,87 2 171358211 rs7593940 G A 1676.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-6.990e+02;SOR=1.358;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1705,129,0 2 171371469 rs34546065 G A 1742.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=0.235;SB=-9.320e+02;SOR=0.753;VQSLOD=8.62;culprit=FS GT:AD:DP:GQ:PL 0/1:61,72:133:99:1771,0,1444 2 171375968 rs56052422 C T 969.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-1.181;SB=-5.350e+02;SOR=0.741;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 0/1:36,37:73:99:998,0,820 2 171400275 rs12623840 T C 355.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.602;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=-0.297;SB=-3.101e+01;SOR=0.892;VQSLOD=10.35;culprit=FS GT:AD:DP:GQ:PL 0/1:10,12:22:99:384,0,296 2 171400720 rs75945929 T C 237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.669;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-0.611;SB=0.00;SOR=0.593;VQSLOD=9.05;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:266,0,294 2 171458370 rs6743969 G A 331.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=1.748;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=0.030;SB=-1.620e+02;SOR=0.387;VQSLOD=9.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,15:24:99:360,0,217 2 171508490 rs10718459 CA C 408.73 PASS AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.55;RPA=8,7;RU=A;SB=-8.151e+01;SOR=2.584;STR;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:446,48,0 2 171570488 rs7563812 C G 705.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.260;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=1.123;SB=-3.370e+02;SOR=1.136;VQSLOD=6.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,25:41:99:734,0,447 2 171572940 rs3749036 G A 701.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.897;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.725;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.274;SB=-1.470e+02;SOR=1.179;VQSLOD=7.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,24:51:99:730,0,699 2 171627676 rs1861462 T G 1111.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.12;SB=-6.450e+02;SOR=0.741;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:84:1140,84,0 2 171632225 rs17694506 C T 1354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.749;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=0.127;SB=-8.180e+02;SOR=0.681;VQSLOD=8.88;culprit=FS GT:AD:DP:GQ:PL 0/1:30,51:81:99:1383,0,769 2 171632385 rs34759682 C CTT 3577.73 PASS AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=-1.659e+03;SOR=0.933;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:64:99:3615,190,0 2 171634347 rs11334749 TA T 821.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.860;DB;DP=42;ExcessHet=3.0103;FS=3.827;MLEAC=1;MLEAF=0.500;MQ=60.26;MQ0=0;MQRankSum=1.001;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=-0.920;SB=-2.220e+02;SOR=0.202;VQSLOD=0.504;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,22:42:99:859,0,827 2 171649402 rs3764916 C T 239.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.086;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.322;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.45;ReadPosRankSum=0.719;SB=-1.400e+02;SOR=0.473;VQSLOD=8.28;culprit=QD GT:AD:DP:GQ:PL 0/1:33,11:44:99:268,0,862 2 171654663 rs2287111 A C 1611.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-4.540e+02;SOR=2.303;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1640,117,0 2 171678625 rs769404 T C 2327.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.71;SB=-1.571e+03;SOR=0.741;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2356,172,0 2 171705157 rs35403424 AT A 333.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=1.342;POSITIVE_TRAIN_SITE;QD=6.18;RPA=11,10;RU=T;ReadPosRankSum=0.878;SB=-3.300e+01;SOR=0.957;STR;VQSLOD=2.77;culprit=QD GT:AD:DP:GQ:PL 0/1:34,20:54:99:371,0,819 2 171806619 rs3770437 A G 631.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.938;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=2.609;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=2.072;SB=-8.197e+01;SOR=0.313;VQSLOD=8.27;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:10,21:31:99:660,0,304 2 171818289 rs2557804 G A 1903.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.29;SB=-9.910e+02;SOR=1.078;VQSLOD=5.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:1932,141,0 2 171822466 rs4668356 C T 4601.77 PASS AC=2;AF=1.00;AN=2;DB;DP=162;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=21.7925;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.27;SB=-2.437e+03;SOR=1.022;VQSLOD=6.04;culprit=DP GT:AD:DP:GQ:PL 1/1:0,152:162:99:4630,352,0 2 171822576 rs3770436 C T 1590.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.746;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=3.910;HaplotypeScore=3.5725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-0.261;SB=-7.490e+02;SOR=1.066;VQSLOD=7.24;culprit=DP GT:AD:DP:GQ:PL 0/1:80,67:147:99:1619,0,2196 2 171850329 rs3731993 T G 447.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.086;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.571;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.96;ReadPosRankSum=-0.270;SB=-2.950e+02;SOR=0.333;VQSLOD=9.36;culprit=QD GT:AD:DP:GQ:PL 0/1:31,19:50:99:476,0,837 2 171851048 . C CA 158.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQ0=0;MQRankSum=1.526;POSITIVE_TRAIN_SITE;QD=7.94;RPA=14,15;RU=A;ReadPosRankSum=-0.265;SB=-4.700e+01;SOR=0.693;STR;VQSLOD=3.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,10:22:99:196,0,157 2 171913207 rs200719254 CAA C 365.73 PASS AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.25;RPA=12,10;RU=A;SB=-3.876e+01;SOR=3.442;STR;VQSLOD=8.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:403,33,0 2 171916664 rs2676130 A T 403.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.65;SB=-3.377e+01;SOR=3.611;VQSLOD=8.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:432,33,0 2 172180771 rs10205459 A G 1732.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.50;SB=-9.050e+02;SOR=1.366;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1761,132,0 2 172378818 rs868106 A G 2810.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-1.358e+03;SOR=1.364;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2839,205,0 2 172378889 rs2356782 C G 1603.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.51;SB=-2.810e+02;SOR=2.885;VQSLOD=4.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1632,120,0 2 172378893 rs3731976 G A 1483.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.51;SB=-2.570e+02;SOR=3.109;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1512,114,0 2 172379686 rs960750 G A 1918.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-7.220e+02;SOR=1.765;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1947,144,0 2 172379781 rs960749 G A 4188.77 PASS AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.22;SB=-2.373e+03;SOR=0.892;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,130:130:99:4217,310,0 2 172379936 rs960748 G A 2157.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;SB=-6.250e+02;SOR=2.406;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2186,172,0 2 172398311 rs7586144 T C 1208.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6265;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-1.891e+02;SOR=3.611;VQSLOD=5.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:90:1237,90,0 2 172398371 rs57998592 CT C 82.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQ0=0;MQRankSum=1.624;POSITIVE_TRAIN_SITE;QD=5.91;RPA=21,20;RU=T;ReadPosRankSum=-0.142;SB=0.00;SOR=1.765;STR;VQSLOD=2.61;culprit=QD GT:AD:DP:GQ:PL 0/1:4,10:15:43:120,0,43 2 172409721 rs2542941 C T 191.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=-0.123;SB=0.00;SOR=0.693;VQSLOD=10.06;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:220,0,243 2 172411273 rs10455 G A 522.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.649;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=3.138;HaplotypeScore=2.5658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=0.194;SB=-1.640e+02;SOR=0.315;VQSLOD=10.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,23:52:99:551,0,885 2 172549248 rs6433311 A G 453.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.36;SB=-3.876e+01;SOR=4.174;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:36:482,36,0 2 172549630 rs6757773 T A 427.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.30;SB=0.00;SOR=5.136;VQSLOD=7.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:456,36,0 2 172582281 rs148511744 A ATTAC 673.74 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.92;SB=-2.155e+02;SOR=1.609;VQSLOD=5.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:711,30,0 2 172586567 rs2292814 G A 45.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.52;ReadPosRankSum=0.762;SB=0.00;SOR=0.124;VQSLOD=9.50;culprit=QD GT:AD:DP:GQ:PL 0/1:10,3:13:74:74,0,372 2 172644229 rs2292813 T C 1592.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.902;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=6.157;HaplotypeScore=3.6200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-1.732;SB=-6.370e+02;SOR=1.292;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 0/1:53,57:110:99:1621,0,1378 2 172709215 rs3770444 G C 324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=0.830;SB=-2.070e+02;SOR=0.693;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:15,15:30:99:353,0,412 2 172712480 rs2056202 T C 203.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.691;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.909;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.84;ReadPosRankSum=1.003;SB=-1.050e+02;SOR=0.283;VQSLOD=9.46;culprit=QD GT:AD:DP:GQ:PL 0/1:16,10:26:99:232,0,460 2 172725301 rs1878583 A G 2269.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.669;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=4.026;HaplotypeScore=3.7210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=1.201;SB=-1.258e+03;SOR=0.403;VQSLOD=7.70;culprit=DP GT:AD:DP:GQ:PL 0/1:66,87:153:99:2298,0,1570 2 172779122 rs28372952 C T 534.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.584;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=16.239;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=0.667;SB=-2.952e+02;SOR=0.030;VQSLOD=4.36;culprit=FS GT:AD:DP:GQ:PL 0/1:19,22:41:99:563,0,641 2 172821739 rs1982288 G T 211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=-0.632;SB=0.00;SOR=1.270;VQSLOD=10.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,7:11:99:240,0,112 2 172864845 rs6730085 C A 824.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.622;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.332;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=-1.813;SB=-1.700e+02;SOR=1.097;VQSLOD=7.21;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:24,27:51:99:853,0,716 2 172865009 rs62183782 T A 1563.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.759;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=2.570;HaplotypeScore=5.6981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=-0.638;SB=-7.310e+02;SOR=0.969;VQSLOD=7.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,60:105:99:1592,0,1160 2 172926211 rs62183852 T G 919.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.556;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.377;HaplotypeScore=3.6202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=-0.688;SB=-2.060e+02;SOR=0.300;VQSLOD=9.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,34:56:99:948,0,662 2 172942448 rs3796058 A C 636.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.710;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=1.826;SB=0.00;SOR=2.833;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 0/1:4,19:23:77:665,0,77 2 172952532 rs705868 A C 440.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.07;SB=-1.483e+02;SOR=1.445;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:469,36,0 2 172966609 rs367836349 G T 158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.247;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.21;ReadPosRankSum=0.069;SB=-6.300e+01;SOR=1.022;VQSLOD=8.54;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:187,0,243 2 173292709 rs6744873 A G 1342.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.451;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=1.788;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.186;SB=-4.650e+02;SOR=0.476;VQSLOD=9.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,49:104:99:1371,0,1453 2 173292713 rs6716540 C T 1288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.822;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=1.849;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.297;SB=-4.790e+02;SOR=0.469;VQSLOD=9.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,47:100:99:1317,0,1435 2 173292728 rs6731763 T C 1074.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.568;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=3.627;HaplotypeScore=4.5574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=-0.473;SB=-3.720e+02;SOR=0.283;VQSLOD=9.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,40:82:99:1103,0,1034 2 173330049 rs148714143 G A 209.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.416;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=-0.396;SB=-1.010e+02;SOR=0.804;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:12,10:22:99:238,0,298 2 173331974 rs2272498 A T 618.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.03;SB=0.00;SOR=5.784;VQSLOD=8.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:647,51,0 2 173332015 rs6433360 G T 1250.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-1.025e+02;SOR=4.235;VQSLOD=5.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:96:1279,96,0 2 173332115 rs2272499 G A 4139.77 PASS AC=2;AF=1.00;AN=2;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-1.898e+03;SOR=1.512;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,142:142:99:4168,307,0 2 173333720 rs17676773 G A 714.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=0.00;SOR=5.994;VQSLOD=8.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:743,57,0 2 173334161 rs72390328 T TATGATTTAGTACC 1424.74 PASS AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-1.488e+02;SOR=3.258;VQSLOD=7.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:11:30:1462,30,0 2 173338660 . T TGG 951.73 PASS AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.83;RPA=3,5;RU=G;SB=-1.465e+02;SOR=3.056;STR;VQSLOD=5.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:21:60:989,60,0 2 173339808 rs11895564 G A 1472.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-2.900e+02;SOR=2.985;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1501,117,0 2 173340200 . C CA 399.73 PASS AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.98;RPA=9,10;RU=A;SB=0.00;SOR=5.670;STR;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:437,48,0 2 173344474 rs1920979 A G 1479.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-6.210e+02;SOR=1.230;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1508,114,0 2 173352103 rs2293649 C T 2721.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8139;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;SB=-1.571e+03;SOR=0.836;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2750,205,0 2 173353060 rs1319059 G A 893.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.99;SB=-3.976e+01;SOR=5.058;VQSLOD=6.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:72:922,72,0 2 173435658 rs141130222 CAG C 868.73 PASS AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.35;SB=-5.676e+01;SOR=4.294;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:906,51,0 2 173600783 . C CG 1366.73 PASS AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;RPA=1,2;RU=G;SB=-5.890e+02;SOR=1.044;STR;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:93:1404,93,0 2 173659913 rs7585729 T C 579.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-1.215e+02;SOR=2.948;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:48:608,48,0 2 173662354 rs6433382 A G 812.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.846;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=-1.173;SB=-4.010e+02;SOR=0.616;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 0/1:49,33:82:99:841,0,1202 2 173686465 rs11446027 T TA 85.87 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.06;MQ0=0;MQRankSum=-0.396;POSITIVE_TRAIN_SITE;QD=6.61;RPA=24,25;RU=A;ReadPosRankSum=-1.870;SB=0.00;SOR=1.609;STR;VQSLOD=2.65;culprit=QD GT:AD:DP:GQ:PL 0/1:4,9:18:15:123,0,15 2 173686663 rs2258180 G T 752.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.878;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=0.445;SB=-3.990e+02;SOR=0.614;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:49,29:78:99:781,0,1486 2 173686798 rs2258175 A G 997.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=0.854;SB=-6.100e+02;SOR=0.689;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:39,43:82:99:1026,0,971 2 173782975 rs11332643 CT C 145.92 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=-0.189;POSITIVE_TRAIN_SITE;QD=9.12;RPA=22,21;RU=T;ReadPosRankSum=-0.557;SB=-6.733e+01;SOR=0.430;STR;VQSLOD=3.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:2,14:23:5:182,0,5 2 173861340 rs2290374 G A 1305.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.78;SB=-8.260e+02;SOR=0.919;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:96:1334,96,0 2 173861450 rs2290375 A T 374.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-7.397e+01;SOR=2.670;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:403,30,0 2 173861456 rs5010643 G C 390.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-3.677e+01;SOR=3.442;VQSLOD=7.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:419,30,0 2 173879534 rs1992808 C A 957.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.93;SB=-1.931e+02;SOR=2.985;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:75:986,75,0 2 173898719 rs2290376 G A 1204.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.005;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=1.642;HaplotypeScore=2.5986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=-0.407;SB=-6.500e+02;SOR=0.512;VQSLOD=9.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,54:104:99:1233,0,1191 2 173913258 rs2290378 G A 390.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.720;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.960;HaplotypeScore=3.6787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=1.179;SB=-9.732e-01;SOR=1.802;VQSLOD=5.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,14:35:99:419,0,674 2 174068513 rs11899707 G C 2609.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.66;SB=-1.234e+03;SOR=1.531;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2638,187,0 2 174082076 rs141141920 CCCT C 226.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.67;RPA=2,1;RU=CCT;ReadPosRankSum=0.298;SB=-1.020e+02;SOR=0.693;STR;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:12:99:264,0,272 2 174086285 rs74417392 C T 278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.130;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=-0.447;SB=-2.004e+01;SOR=1.148;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:17,11:28:99:307,0,512 2 174094129 rs10169914 G C 208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=0.942;SB=-2.302e+01;SOR=0.693;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:13,8:21:99:237,0,394 2 174094345 rs10193498 A T 751.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=0.733;SB=-3.800e+02;SOR=0.799;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:22,28:50:99:780,0,585 2 174097106 rs16861406 A G 541.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.232;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=4.591;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-0.779;SB=-1.760e+02;SOR=1.502;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 0/1:21,22:43:99:570,0,539 2 174103160 rs3739103 T C 665.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.492;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=4.541;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.43;ReadPosRankSum=-0.172;SB=-4.850e+02;SOR=0.302;VQSLOD=9.42;culprit=QD GT:AD:DP:GQ:PL 0/1:49,30:79:99:694,0,1263 2 174104358 rs77541672 T C 237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.045;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.172;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=-0.073;SB=-2.601e+01;SOR=1.609;VQSLOD=5.90;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,8:21:99:266,0,335 2 174123399 rs820008 A G 448.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=6.463;HaplotypeScore=3.2601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=-1.301;SB=-1.780e+02;SOR=0.132;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 0/1:21,19:40:99:477,0,668 2 174123408 rs150855284 ATTTTGT A 1314.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;DB;DP=45;ExcessHet=3.0103;FS=2.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.94;ReadPosRankSum=0.275;SB=-4.570e+02;SOR=0.324;VQSLOD=8.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,18:45:99:1352,0,2022 2 174131392 rs35608243 T C 818.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.404;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=-0.338;SB=-4.290e+02;SOR=0.573;VQSLOD=9.10;culprit=FS GT:AD:DP:GQ:PL 0/1:20,31:51:99:847,0,544 2 174131511 . TA T 44.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;DP=19;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.44;RPA=17,16;RU=A;ReadPosRankSum=-0.071;SB=-3.907e+01;SOR=0.105;STR;VQSLOD=7.43;culprit=QD GT:AD:DP:GQ:PL 0/1:8,5:19:82:82,0,144 2 174227876 rs767074 A G 1948.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.53;SB=-7.670e+02;SOR=1.793;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:1977,153,0 2 174229731 rs13382180 A G 2568.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SB=-7.540e+02;SOR=2.133;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2597,190,0 2 174230153 rs2288993 C G 1999.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.85;SB=-9.710e+02;SOR=1.410;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2028,144,0 2 174230983 . G GT 971.73 PASS AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.58;RPA=8,9;RU=T;SB=-1.243e+02;SOR=3.675;STR;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:35:99:1009,102,0 2 174232076 rs3816061 G A 1340.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.52;SB=-3.500e+02;SOR=2.419;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1369,102,0 2 174943876 rs3754812 C T 153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.495;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.52;ReadPosRankSum=1.853;SB=-1.140e+02;SOR=0.720;VQSLOD=8.71;culprit=QD GT:AD:DP:GQ:PL 0/1:24,10:34:99:182,0,687 2 174946985 rs10930635 T C 254.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=0.062;SB=0.00;SOR=0.481;VQSLOD=10.29;culprit=FS GT:AD:DP:GQ:PL 0/1:13,10:23:99:283,0,427 2 174987794 rs34684057 A G 540.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.440;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-0.078;SB=-1.970e+02;SOR=0.412;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:28,22:50:99:569,0,707 2 175174922 rs7582402 T C 394.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SB=-1.115e+02;SOR=2.147;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:423,30,0 2 175199691 rs72915559 C T 897.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.220;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=-0.240;SB=-2.901e+01;SOR=1.179;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:29,28:57:99:926,0,877 2 175199869 rs56000618 G T 2426.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.497;DB;DP=186;Dels=0.00;ExcessHet=3.0103;FS=5.160;HaplotypeScore=3.9039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.635;SB=-1.350e+03;SOR=0.635;VQSLOD=6.07;culprit=DP GT:AD:DP:GQ:PL 0/1:97,89:186:99:2455,0,2503 2 175200014 rs34372833 G A 1092.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.708;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=4.451;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=2.357;SB=-6.400e+01;SOR=1.850;VQSLOD=5.11;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:21,34:56:99:1121,0,621 2 175201299 rs62174227 C G 666.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.265;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=1.814;SB=-4.150e+02;SOR=0.846;VQSLOD=9.16;culprit=FS GT:AD:DP:GQ:PL 0/1:16,26:42:99:695,0,442 2 175263218 rs10930660 A G 782.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.115;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=3.120;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-0.093;SB=-1.790e+02;SOR=0.326;VQSLOD=9.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,30:55:99:811,0,764 2 175289314 rs17255817 T C 143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.788;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.64;ReadPosRankSum=0.260;SB=-7.100e+01;SOR=0.610;VQSLOD=9.21;culprit=QD GT:AD:DP:GQ:PL 0/1:24,7:31:99:172,0,604 2 175300997 rs6757461 G A 1407.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=1.443;HaplotypeScore=2.6766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-0.803;SB=-7.960e+02;SOR=0.833;VQSLOD=7.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,60:120:99:1436,0,1620 2 175306645 rs34371550 AT A 89.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.309;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.97;RPA=11,10;RU=T;ReadPosRankSum=1.242;SB=0.00;SOR=1.085;STR;VQSLOD=7.76;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:87:127,0,87 2 175306691 rs35594437 G A 304.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.245;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=-0.850;SB=-1.420e+02;SOR=0.693;VQSLOD=9.76;culprit=FS GT:AD:DP:GQ:PL 0/1:4,13:17:89:333,0,89 2 175306804 rs7574442 C G 392.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.665;SB=-2.070e+02;SOR=0.512;VQSLOD=10.22;culprit=FS GT:AD:DP:GQ:PL 0/1:16,14:30:99:421,0,469 2 175309792 rs34291465 T C 289.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.265;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=0.228;SB=-1.740e+02;SOR=0.721;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:9,11:20:99:318,0,220 2 175318590 rs12468711 G T 958.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.521;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=2.486;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-0.248;SB=-2.800e+02;SOR=0.403;VQSLOD=10.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,36:73:99:987,0,1097 2 175324882 . AT A 86.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.29;MQ0=0;MQRankSum=1.093;QD=6.20;RPA=24,23;RU=T;ReadPosRankSum=0.078;SB=-1.461e+01;SOR=0.527;STR;VQSLOD=1.54;culprit=QD GT:AD:DP:GQ:PL 0/1:3,11:25:19:124,0,19 2 175335076 rs2358637 G T 848.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-3.976e+01;SOR=4.892;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:66:877,66,0 2 175431707 rs2163236 C G 513.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.926;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=0.863;SB=-2.400e+02;SOR=0.330;VQSLOD=9.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,21:43:99:542,0,614 2 175431990 rs143689509 AAGAG A 709.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.27;RPA=5,3;RU=AG;ReadPosRankSum=-0.730;SB=-1.300e+02;SOR=0.430;STR;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 0/1:4,12:24:99:747,0,219 2 175436940 rs4972450 G A 3326.77 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8184;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.99;SB=-1.646e+03;SOR=1.201;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:105:99:3355,247,0 2 175439512 rs1367218 T C 1064.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.02;SB=-5.530e+02;SOR=1.179;VQSLOD=5.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:78:1093,78,0 2 175439536 rs12624277 G A 332.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.935;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.795;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.39;ReadPosRankSum=1.043;SB=-1.420e+02;SOR=1.241;VQSLOD=6.02;culprit=QD GT:AD:DP:GQ:PL 0/1:31,14:45:99:361,0,724 2 175439681 . T TA 146.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;DP=23;ExcessHet=3.0103;FS=3.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.67;RPA=13,14;RU=A;ReadPosRankSum=-0.402;SB=-5.400e+01;SOR=1.342;STR;VQSLOD=5.91;culprit=QD GT:AD:DP:GQ:PL 0/1:13,9:23:99:184,0,197 2 175613115 rs2255918 G A 408.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.316;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=1.212;SB=-1.570e+02;SOR=0.976;VQSLOD=6.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,16:37:99:437,0,490 2 175613169 rs2305414 A C 1603.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.45;SB=-7.220e+02;SOR=1.201;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1632,120,0 2 175613273 rs2305415 A T 1198.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=-0.912;SB=-5.330e+02;SOR=0.644;VQSLOD=9.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,48:112:99:1227,0,1694 2 175613600 rs2646159 T C 416.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=0.00;SOR=4.977;VQSLOD=8.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:445,33,0 2 175614908 . CAA C 523.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;DP=65;ExcessHet=3.0103;FS=3.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;RPA=17,15;RU=A;ReadPosRankSum=0.396;SB=-1.692e+02;SOR=0.213;STR;VQSLOD=9.46;culprit=SOR GT:AD:DP:GQ:PL 0/1:26,23:65:99:561,0,486 2 175622178 rs11327107 TG T 436.73 PASS AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;RPA=3,2;RU=G;SB=0.00;SOR=4.977;STR;VQSLOD=7.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:474,33,0 2 175622788 rs2646164 G A 815.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-2.401e+02;SOR=2.215;VQSLOD=5.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:63:844,63,0 2 175624107 rs34695580 GA G 776.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.161;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQ0=0;MQRankSum=0.898;POSITIVE_TRAIN_SITE;QD=12.33;RPA=9,8;RU=A;ReadPosRankSum=-0.292;SB=-4.060e+02;SOR=0.627;STR;VQSLOD=3.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,36:69:99:814,0,580 2 175628864 rs35012039 A G 159.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.679;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=3.067;SB=0.00;SOR=0.859;VQSLOD=8.38;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,6:11:99:188,0,159 2 175629021 rs7560774 C A 947.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.501;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=-0.042;SB=-6.170e+02;SOR=0.673;VQSLOD=9.20;culprit=FS GT:AD:DP:GQ:PL 0/1:50,43:93:99:976,0,1283 2 175666656 rs2646153 G A 237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=-0.353;SB=0.00;SOR=1.179;VQSLOD=10.39;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:266,0,163 2 175677022 rs12613075 C T 563.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.561;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-0.426;SB=-1.270e+02;SOR=0.632;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:27,21:48:99:592,0,771 2 175711942 rs14228 C T 455.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.146;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-0.330;SB=-1.010e+02;SOR=0.941;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:18,17:35:99:484,0,503 2 176032376 rs79402775 G A 1443.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.343;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=1.529;HaplotypeScore=1.9321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.548;SB=-1.020e+03;SOR=0.507;VQSLOD=8.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,64:114:99:1472,0,1230 2 176045832 rs268226 C A 1777.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.57;SB=0.00;SOR=7.784;VQSLOD=1.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1806,141,0 2 176046257 rs268227 C T 426.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=0.00;SOR=5.136;VQSLOD=8.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:455,36,0 2 176190259 rs6729868 T C 535.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;SB=-1.293e+02;SOR=1.739;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:564,42,0 2 176866806 . G A 913.77 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.48;SB=-3.350e+02;SOR=1.839;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:69:942,69,0 2 176866967 rs935492 C T 739.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.59;SB=-2.610e+02;SOR=1.893;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:768,60,0 2 176947237 rs6758117 C T 1589.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.90;SB=-7.760e+02;SOR=1.262;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1618,117,0 2 176958701 rs847194 A C 409.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.07;SB=-4.276e+01;SOR=3.442;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:438,33,0 2 176959113 . GCACACA GCA,G 1783.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.65;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;RPA=16,14,13;RU=CA;SB=-1.480e+02;SOR=3.981;STR;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/2:0,20,11:33:99:1821,318,226,826,0,815 2 176964904 rs847151 G A 2589.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-1.175e+03;SOR=1.179;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2618,196,0 2 176981343 rs7601234 G T 418.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.90;SB=-3.577e+01;SOR=3.611;VQSLOD=7.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:447,33,0 2 176988290 rs35578003 C CGCA 2887.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.514;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;MQRankSum=0.300;QD=30.85;RPA=4,5;RU=GCA;ReadPosRankSum=-0.966;SB=-1.112e+03;SOR=0.519;STR;VQSLOD=1.97;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,51:56:99:2925,99,0 2 176989023 rs711822 C T 349.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-4.076e+01;SOR=3.442;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:378,30,0 2 176996023 rs4972804 C T 870.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.03;SB=-2.750e+02;SOR=2.226;VQSLOD=7.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:66:899,66,0 2 177014970 rs1867863 G T 1161.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.19;SB=-3.040e+02;SOR=2.368;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:90:1190,90,0 2 177036211 rs2857535 G A 1627.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;SB=-7.000e+02;SOR=1.528;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1656,120,0 2 177036754 rs1051929 T C 6580.77 PASS AC=2;AF=1.00;AN=2;DB;DP=197;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.40;SB=-3.825e+03;SOR=0.724;VQSLOD=5.34;culprit=DP GT:AD:DP:GQ:PL 1/1:0,197:197:99:6609,482,0 2 177054472 rs368324761 C T 3155.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.34;SB=-1.894e+03;SOR=0.732;VQSLOD=5.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3184,238,0 2 177107092 rs1851790 G C 472.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.81;SB=-2.341e+02;SOR=1.061;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:36:501,36,0 2 177107273 rs10930724 T C 1211.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.54;SB=-8.700e+02;SOR=0.784;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:87:1240,87,0 2 177107356 rs10208410 A G 933.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=-3.330e+02;SOR=1.839;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:69:962,69,0 2 177193439 rs72925142 G A 594.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.16;SB=0.00;SOR=5.670;VQSLOD=7.86;culprit=DP GT:AD:DP:GQ:PL 1/1:0,16:16:48:623,48,0 2 177497614 rs2922313 A G 977.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=-2.700e+02;SOR=2.376;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:75:1006,75,0 2 177497751 rs2922314 G A 1605.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.22;SB=-8.090e+02;SOR=1.316;VQSLOD=5.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1634,120,0 2 177497817 rs2969361 A C 951.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.74;SB=-3.590e+02;SOR=1.911;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:69:980,69,0 2 178062900 rs3109084 G A 921.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-5.570e+02;SOR=0.760;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:69:950,69,0 2 178092502 rs67973222 A G 1094.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.818;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=2.135;SB=-7.320e+02;SOR=0.583;VQSLOD=8.73;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:39,45:84:99:1123,0,964 2 178178466 rs1453376 T C 1802.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.62;SB=-1.142e+03;SOR=0.933;VQSLOD=7.12;culprit=DP GT:AD:DP:GQ:PL 1/1:0,63:63:99:1831,129,0 2 178301428 rs3754989 C T 945.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.61;SB=-2.001e+02;SOR=2.910;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:974,72,0 2 178307330 rs4893951 C T 681.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.57;SB=0.00;SOR=5.892;VQSLOD=8.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:710,54,0 2 178326838 rs1979059 C G 787.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.47;SB=-7.997e+01;SOR=3.912;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:816,60,0 2 178326847 rs1979058 G A 662.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.99;SB=-4.076e+01;SOR=4.407;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:691,51,0 2 178358072 rs1348849 C T 1452.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-5.070e+02;SOR=1.931;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1481,114,0 2 178378452 rs2364854 T A 357.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;SB=0.00;SOR=4.804;VQSLOD=8.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:386,30,0 2 178415698 . T C 1833.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;DP=142;Dels=0.00;ExcessHet=3.0103;FS=5.014;HaplotypeScore=5.6730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.91;ReadPosRankSum=0.664;SB=-1.099e+03;SOR=1.060;VQSLOD=5.21;culprit=FS GT:AD:DP:GQ:PL 0/1:65,77:142:99:1862,0,1705 2 178417142 rs11694988 C T 3117.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.82;SB=-1.116e+03;SOR=1.634;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:3146,238,0 2 178417225 rs11695035 C T 3615.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.11;SB=-1.212e+03;SOR=1.609;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3644,286,0 2 178481818 rs10497497 G T 3729.77 PASS AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6936;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-1.981e+03;SOR=0.916;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,127:127:99:3758,298,0 2 178494173 rs67772336 G GGGA 1830.73 PASS AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;RPA=2,3;RU=GGA;SB=-4.730e+02;SOR=2.165;STR;VQSLOD=6.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:96:1868,96,0 2 178528351 rs3770003 T C 409.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SB=0.00;SOR=4.977;VQSLOD=8.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:438,33,0 2 178528360 rs1544003 A G 423.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=0.00;SOR=4.977;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:452,33,0 2 178528703 rs13025391 C T 2506.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.98;SB=-1.146e+03;SOR=1.270;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2535,187,0 2 178528789 rs13025904 G A 1120.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.74;SB=-3.850e+02;SOR=2.133;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:87:1149,87,0 2 178528874 rs3770005 T C 381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.82;SB=0.00;SOR=4.804;VQSLOD=8.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:410,30,0 2 178534324 rs6433687 A G 1225.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.86;SB=-7.990e+02;SOR=0.883;VQSLOD=4.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:90:1254,90,0 2 178540293 rs3770016 A G 2294.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;SB=-1.239e+03;SOR=1.031;VQSLOD=5.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2323,169,0 2 178545713 rs4538242 C T 646.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-1.911e+02;SOR=2.093;VQSLOD=6.37;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,20:20:51:675,51,0 2 178561865 rs2365623 T C 452.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.31;SB=0.00;SOR=5.136;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:481,36,0 2 178561947 rs2886424 G C 1768.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.68;SB=-3.140e+02;SOR=2.970;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1797,132,0 2 178565815 rs10201180 T C 3480.77 PASS AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4490;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.01;SB=-1.963e+03;SOR=0.871;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,120:120:99:3509,265,0 2 178592831 rs143303102 C T 777.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=6.580;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.65;ReadPosRankSum=-1.579;SB=-1.920e+02;SOR=1.512;VQSLOD=4.29;culprit=FS GT:AD:DP:GQ:PL 0/1:44,29:73:99:806,0,1212 2 178681716 rs1438059 G C 598.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.086;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=2.788;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-0.828;SB=-2.810e+02;SOR=0.368;VQSLOD=9.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,23:43:99:627,0,620 2 178704882 rs3770054 A G 811.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.034;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=4.062;HaplotypeScore=2.3913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-0.384;SB=-3.120e+02;SOR=0.250;VQSLOD=9.61;culprit=SOR GT:AD:DP:GQ:PL 0/1:36,31:67:99:840,0,1044 2 178762824 rs71423514 T C 564.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.843;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=0.990;SB=-3.930e+02;SOR=0.760;VQSLOD=9.20;culprit=FS GT:AD:DP:GQ:PL 0/1:25,26:51:99:593,0,621 2 178769917 rs13012088 G A 454.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.337;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=1.008;SB=-1.900e+02;SOR=0.399;VQSLOD=9.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,19:44:99:483,0,685 2 178769992 rs2695096 T C 531.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.24;SB=-3.677e+01;SOR=4.174;VQSLOD=8.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:560,42,0 2 178862673 rs1836672 C T 234.80 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.48;SB=0.00;SOR=3.258;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:21:263,21,0 2 178863260 rs2117738 G A 162.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.40;ReadPosRankSum=-0.423;SB=-9.000e+01;SOR=0.569;VQSLOD=9.72;culprit=QD GT:AD:DP:GQ:PL 0/1:15,7:22:99:191,0,334 2 178883209 rs71423544 C A 115.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.378;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=0.728;POSITIVE_TRAIN_SITE;QD=7.72;ReadPosRankSum=0.225;SB=-1.020e+02;SOR=0.527;VQSLOD=2.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,7:15:99:144,0,187 2 178936373 rs1435573 T G 1810.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.986;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.651;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=1.058;SB=-9.060e+02;SOR=0.820;VQSLOD=8.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,66:132:99:1839,0,1762 2 178936614 rs6433711 C T 3693.77 PASS AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-2.283e+03;SOR=0.796;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,120:120:99:3722,271,0 2 178977620 rs2276622 C G 3466.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.45;SB=-4.100e+02;SOR=4.035;VQSLOD=3.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:3495,262,0 2 178986130 . TACACACACAC T 796.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.008;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.31;MQ0=0;MQRankSum=2.822;POSITIVE_TRAIN_SITE;QD=18.39;RPA=20,15;RU=AC;ReadPosRankSum=0.592;SB=0.00;SOR=2.147;STR;VQSLOD=2.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,10:17:97:834,0,97 2 179189026 rs376361550 C T 581.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.171;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=3.161;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.19;ReadPosRankSum=0.432;SB=-1.970e+02;SOR=0.258;VQSLOD=8.44;culprit=SOR GT:AD:DP:GQ:PL 0/1:28,24:52:99:610,0,910 2 179203797 rs1434087 G A 1621.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.45;SB=-9.480e+02;SOR=1.047;VQSLOD=7.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1650,117,0 2 179226290 rs1560871 T C 360.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7477;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.48;SB=0.00;SOR=4.804;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:389,30,0 2 179236831 rs6433724 A G 741.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.49;SB=-4.060e+02;SOR=1.382;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:54:770,54,0 2 179238507 rs7595571 T C 2201.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.36;SB=-9.100e+02;SOR=1.284;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2230,172,0 2 179238841 rs10190530 A G 3067.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-7.170e+02;SOR=2.646;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:3096,229,0 2 179258923 rs919177 C T 240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=0.674;SB=-6.500e+01;SOR=0.693;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:14,10:24:99:269,0,426 2 179260382 rs2304340 A G 1054.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.23;SB=-2.151e+02;SOR=2.546;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:81:1083,81,0 2 179260653 rs34253857 A G 679.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.245;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.094;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=-0.139;SB=-2.170e+02;SOR=1.314;VQSLOD=7.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,26:47:99:708,0,571 2 179306614 . CT C 46.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQ0=0;MQRankSum=0.674;POSITIVE_TRAIN_SITE;QD=4.67;RPA=17,16;RU=T;ReadPosRankSum=-0.298;SB=0.00;SOR=0.693;STR;VQSLOD=2.88;culprit=QD GT:AD:DP:GQ:PL 0/1:5,5:13:84:84,0,96 2 179319677 rs79690262 C T 135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.219;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.398;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=1.283;SB=-2.801e+01;SOR=1.609;VQSLOD=5.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,5:12:99:164,0,228 2 179366093 rs2303537 C T 608.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.114;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=0.745;SB=0.00;SOR=0.804;VQSLOD=10.24;culprit=FS GT:AD:DP:GQ:PL 0/1:17,19:36:99:637,0,584 2 179395958 rs3813250 T C 2407.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.118;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=2.215;SB=-1.339e+03;SOR=0.654;VQSLOD=7.85;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:62,87:150:99:2436,0,1750 2 179403750 rs4894028 C T 3572.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.212;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=2.148;HaplotypeScore=7.3473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=0.873;SB=-1.857e+03;SOR=0.862;VQSLOD=5.41;culprit=DP GT:AD:DP:GQ:PL 0/1:119,130:250:99:3601,0,3300 2 179406003 rs3731750 C A 1341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.214;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=2.539;HaplotypeScore=4.5740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=1.825;SB=-7.400e+02;SOR=0.487;VQSLOD=9.40;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:51,56:107:99:1370,0,1509 2 179408713 rs62621236 A G 689.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.066;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.869;HaplotypeScore=5.0459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.42;ReadPosRankSum=-0.204;SB=-3.670e+02;SOR=1.044;VQSLOD=5.99;culprit=QD GT:AD:DP:GQ:PL 0/1:62,31:93:99:718,0,1671 2 179414318 rs747122 C T 1084.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.239;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=5.046;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=-1.880;SB=-6.250e+02;SOR=0.854;VQSLOD=5.71;culprit=FS GT:AD:DP:GQ:PL 0/1:23,42:65:99:1113,0,714 2 179416556 rs11897366 A C 905.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.888;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=7.213;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=-1.664;SB=-4.930e+02;SOR=0.462;VQSLOD=5.63;culprit=FS GT:AD:DP:GQ:PL 0/1:49,36:85:99:934,0,1357 2 179421609 rs9808036 C T 888.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=5.968;HaplotypeScore=2.6812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=0.799;SB=-3.430e+02;SOR=1.418;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 0/1:47,34:81:99:917,0,1184 2 179421694 rs9808377 A G 1546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.703;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=3.406;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-0.801;SB=-7.140e+02;SOR=1.077;VQSLOD=7.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:63,54:117:99:1575,0,1748 2 179427186 rs2366751 A G 878.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.471;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=1.916;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-0.040;SB=-3.350e+02;SOR=1.005;VQSLOD=7.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,33:79:99:907,0,1343 2 179427536 rs3829746 T C 1368.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=0.090;SB=-8.610e+02;SOR=0.661;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:59,56:115:99:1397,0,1435 2 179432185 rs12463674 A G 1782.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.170;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=4.674;HaplotypeScore=6.6658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=0.536;SB=-7.080e+02;SOR=1.166;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 0/1:55,59:116:99:1811,0,1393 2 179435337 rs6732060 T G 1404.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.196;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=2.505;HaplotypeScore=1.9463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=-1.328;SB=-8.310e+02;SOR=0.480;VQSLOD=9.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,57:106:99:1433,0,1365 2 179438866 rs10164753 C T 1102.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=-0.335;SB=-7.090e+02;SOR=0.783;VQSLOD=8.27;culprit=FS GT:AD:DP:GQ:PL 0/1:53,47:100:99:1131,0,1422 2 179439890 . C T 783.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.729;DP=112;Dels=0.00;ExcessHet=3.0103;FS=2.692;HaplotypeScore=8.2053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.00;ReadPosRankSum=0.617;SB=-4.060e+02;SOR=1.054;VQSLOD=4.65;culprit=QD GT:AD:DP:GQ:PL 0/1:73,39:112:99:812,0,2059 2 179440029 rs12464787 G A 2055.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=1.317;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-0.614;SB=-1.038e+03;SOR=0.541;VQSLOD=8.23;culprit=DP GT:AD:DP:GQ:PL 0/1:73,75:148:99:2084,0,1875 2 179440163 rs55801134 C G 3162.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.108;DB;DP=237;Dels=0.00;ExcessHet=3.0103;FS=2.188;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-0.888;SB=-1.982e+03;SOR=0.813;VQSLOD=6.03;culprit=DP GT:AD:DP:GQ:PL 0/1:113,124:237:99:3191,0,2837 2 179443217 rs3769864 T G 542.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.311;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=2.200;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-2.124;SB=-1.120e+02;SOR=0.180;VQSLOD=8.93;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:18,18:36:99:571,0,566 2 179443540 rs10497517 A G 2182.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.063;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=3.893;HaplotypeScore=5.4806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=-0.386;SB=-1.022e+03;SOR=1.045;VQSLOD=7.45;culprit=DP GT:AD:DP:GQ:PL 0/1:71,80:152:99:2211,0,1921 2 179444768 rs4145333 C G 3064.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.60;SB=-1.800e+03;SOR=0.736;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:3093,229,0 2 179447848 rs4894029 T C 1158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.833;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-0.353;SB=-7.080e+02;SOR=0.738;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 0/1:59,50:109:99:1187,0,1690 2 179448967 rs375215121 A AAAC 717.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.43;RPA=4,5;RU=AAC;ReadPosRankSum=-0.622;SB=-2.530e+02;SOR=0.693;STR;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 0/1:16,16:35:99:755,0,699 2 179451420 rs2042996 G A 1527.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.479;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.681;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-0.038;SB=-7.900e+02;SOR=0.770;VQSLOD=8.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,58:118:99:1556,0,1677 2 179454394 rs1560221 A G 1551.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.294;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.676;HaplotypeScore=2.6639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=1.266;SB=-9.600e+02;SOR=0.818;VQSLOD=7.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,63:122:99:1580,0,1451 2 179455207 rs2163009 T C 1362.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.958;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=-0.653;SB=-6.510e+02;SOR=0.630;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:61,54:115:99:1391,0,1640 2 179462142 rs6712785 A G 259.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=0.592;SB=0.00;SOR=1.609;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:4,9:13:99:288,0,115 2 179462494 rs35833641 A G 965.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.814;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=-0.332;SB=-5.010e+02;SOR=0.532;VQSLOD=9.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,37:90:99:994,0,1417 2 179464527 rs1001238 T C 1332.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.043;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=8.177;HaplotypeScore=1.7987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=0.076;SB=-5.440e+02;SOR=1.515;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 0/1:49,54:103:99:1361,0,1338 2 179477332 rs34928195 AT A 233.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.74;RPA=11,10;RU=T;ReadPosRankSum=0.351;SB=-1.080e+02;SOR=0.527;STR;VQSLOD=8.40;culprit=FS GT:AD:DP:GQ:PL 0/1:10,14:28:99:271,0,208 2 179479741 rs16866416 G A 559.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.672;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.631;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=0.368;SB=-2.380e+02;SOR=0.380;VQSLOD=9.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,23:54:99:588,0,982 2 179486166 . TTAGAAATAAA T 4257.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.168;DP=82;ExcessHet=3.0103;FS=9.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.81;ReadPosRankSum=1.343;SB=-1.210e+03;SOR=1.819;VQSLOD=4.12;culprit=FS GT:AD:DP:GQ:PL 0/1:42,34:82:99:4295,0,5442 2 179486178 . G GT 763.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;DP=80;ExcessHet=3.0103;FS=11.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.55;ReadPosRankSum=2.643;SB=-1.760e+02;SOR=1.794;VQSLOD=3.21;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:46,34:80:99:801,0,1966 2 179486179 . A T 987.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.710;DP=80;Dels=0.00;ExcessHet=3.0103;FS=11.735;HaplotypeScore=1.9463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.35;ReadPosRankSum=2.755;SB=-3.010e+02;SOR=1.794;VQSLOD=3.26;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:46,34:80:99:1016,0,1280 2 179486223 rs17354992 C T 1370.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=3.517;HaplotypeScore=3.9990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=1.074;SB=-7.750e+02;SOR=0.438;VQSLOD=9.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,48:110:99:1399,0,1612 2 179497223 . T TG 1474.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQ0=0;MQRankSum=0.761;QD=21.37;RPA=4,5;RU=G;ReadPosRankSum=1.399;SB=-5.700e+02;SOR=0.700;STR;VQSLOD=2.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,45:72:99:1512,0,644 2 179498303 rs16866425 T C 776.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.842;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.728;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=-1.212;SB=-4.000e+02;SOR=0.459;VQSLOD=7.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,25:56:99:805,0,800 2 179499038 rs7590037 A G 930.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.397;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=4.578;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-0.175;SB=-2.790e+02;SOR=1.273;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 0/1:45,35:80:99:959,0,1117 2 179511767 . GTA G 925.82 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.72;RPA=11,10;RU=TA;ReadPosRankSum=-1.354;SB=-3.820e+02;SOR=0.813;STR;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 0/1:7,29:39:99:963,0,205 2 179513923 rs7606485 A T 1084.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.759;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.198;HaplotypeScore=4.4977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-0.151;SB=-2.210e+02;SOR=0.492;VQSLOD=9.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,40:76:99:1113,0,1010 2 179528378 rs2163008 C T 333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.013;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-0.762;SB=-6.800e+01;SOR=1.270;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:12,13:26:99:362,0,317 2 179528989 rs2562848 C T 214.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=5.229;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.48;ReadPosRankSum=-0.319;SB=-1.765e+00;SOR=3.383;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:82:243,0,82 2 179531856 rs10221760 G A 220.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.982;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=7.659;HaplotypeScore=1.9142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=-1.992;SB=-7.297e+01;SOR=0.041;VQSLOD=7.73;culprit=FS GT:AD:DP:GQ:PL 0/1:12,9:21:99:249,0,439 2 179539903 rs2472751 C A 965.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.170;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.915;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=0.643;SB=-4.830e+02;SOR=0.555;VQSLOD=9.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,41:77:99:994,0,842 2 179539963 rs13398590 T C 383.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.857;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-0.596;SB=-2.701e+01;SOR=1.002;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:17,14:31:99:412,0,519 2 179541899 rs2742351 C G 2839.77 PASS AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;SB=-1.719e+03;SOR=1.037;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,99:99:99:2868,202,0 2 179542233 rs2742349 G A 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.527;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=0.616;SB=0.00;SOR=0.346;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:13,8:21:99:241,0,447 2 179545859 rs36051007 C T 1505.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.739;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=1.141;SB=-8.670e+02;SOR=0.779;VQSLOD=7.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,57:101:99:1534,0,1087 2 179547293 rs4894034 G A 273.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.678;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-0.123;SB=-1.765e+00;SOR=1.609;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:10,9:19:99:302,0,273 2 179548695 rs372078760 AT A 205.50 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.806;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;MQRankSum=0.612;QD=14.68;RPA=16,15;RU=T;ReadPosRankSum=-1.281;SB=-4.997e+01;SOR=0.914;STR;VQSLOD=1.84;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,12:15:3:241,3,0 2 179553917 rs2627038 G A 905.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.965;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.990;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.772;SB=-3.820e+02;SOR=0.974;VQSLOD=7.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,35:72:99:934,0,933 2 179554305 rs2244492 C T 1321.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;SB=-5.960e+02;SOR=1.508;VQSLOD=7.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1350,99,0 2 179558366 rs2042995 T C 533.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=2.280;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.34;ReadPosRankSum=-0.581;SB=-2.890e+02;SOR=0.382;VQSLOD=9.64;culprit=QD GT:AD:DP:GQ:PL 0/1:41,23:64:99:562,0,1035 2 179566146 rs2251987 T G 1335.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=-3.250e+02;SOR=2.494;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1364,102,0 2 179566802 . T TA 1003.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;DP=107;ExcessHet=3.0103;FS=9.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;RPA=10,11;RU=A;ReadPosRankSum=1.038;SB=-3.050e+02;SOR=1.581;STR;VQSLOD=4.77;culprit=FS GT:AD:DP:GQ:PL 0/1:54,47:107:99:1041,0,1080 2 179571448 rs4893852 A G 988.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.849;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.378;SB=-4.820e+02;SOR=0.599;VQSLOD=9.95;culprit=FS GT:AD:DP:GQ:PL 0/1:33,36:69:99:1017,0,981 2 179571697 rs10203085 C T 1342.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.225;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=1.976;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=-0.103;SB=-5.400e+02;SOR=0.452;VQSLOD=9.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,51:87:99:1371,0,997 2 179576596 rs2742331 A T 650.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=3.276;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=2.509;SB=-9.300e+01;SOR=1.476;VQSLOD=5.86;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:25,23:48:99:679,0,651 2 179578704 rs13398235 G A 1413.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.825;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=4.824;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=-0.093;SB=-6.790e+02;SOR=1.114;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 0/1:53,52:105:99:1442,0,1209 2 179578730 rs2562839 G A 1501.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.591;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=2.517;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=-0.770;SB=-8.490e+02;SOR=0.755;VQSLOD=7.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,54:105:99:1530,0,1219 2 179579212 rs2562838 T C 645.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.468;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.50;ReadPosRankSum=0.069;SB=-3.970e+02;SOR=0.655;VQSLOD=8.96;culprit=FS GT:AD:DP:GQ:PL 0/1:42,26:68:99:674,0,1113 2 179579822 rs2562836 T A 1545.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.937;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=3.079;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=0.146;SB=-8.280e+02;SOR=0.452;VQSLOD=7.62;culprit=DP GT:AD:DP:GQ:PL 0/1:84,60:144:99:1574,0,2074 2 179580210 rs10183237 G A 876.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.086;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.371;HaplotypeScore=3.6820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=-0.596;SB=-2.440e+02;SOR=0.470;VQSLOD=10.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,37:61:99:905,0,655 2 179580525 rs10183361 C T 618.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.169;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=-0.664;SB=-1.840e+02;SOR=0.593;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:37,26:63:99:647,0,1143 2 179582537 rs2627043 G T 994.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=0.101;SB=-6.540e+02;SOR=0.582;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:45,40:85:99:1023,0,1235 2 179585266 rs2562831 C T 2962.77 PASS AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.86;SB=-1.750e+03;SOR=0.804;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:93:99:2991,223,0 2 179585312 rs17452588 G A 811.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.901;HaplotypeScore=6.4905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-2.082;SB=-5.240e+02;SOR=0.428;VQSLOD=8.72;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:41,34:75:99:840,0,1089 2 179585393 rs2562830 A G 675.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.029;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=6.190;HaplotypeScore=3.4184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=-1.832;SB=-5.200e+01;SOR=2.231;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 0/1:22,22:44:99:704,0,495 2 179586901 . G GT 776.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQ0=0;MQRankSum=1.085;POSITIVE_TRAIN_SITE;QD=10.79;RPA=7,8;RU=T;ReadPosRankSum=-1.241;SB=-3.750e+02;SOR=0.704;STR;VQSLOD=2.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,34:76:99:814,0,856 2 179587546 rs16866473 A G 898.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.889;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=3.097;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=1.138;SB=-4.450e+02;SOR=0.768;VQSLOD=5.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,31:77:99:927,0,1137 2 179587687 rs2742327 T C 926.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.620;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=5.057;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=-1.080;SB=-4.970e+02;SOR=0.424;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 0/1:29,31:60:99:955,0,808 2 179589241 rs17355446 G A 926.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.908;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=5.045;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=0.897;SB=-5.730e+02;SOR=0.297;VQSLOD=9.20;culprit=FS GT:AD:DP:GQ:PL 0/1:25,40:65:99:955,0,699 2 179592724 rs2627042 A G 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.268;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=-0.462;SB=-3.500e+01;SOR=0.693;VQSLOD=10.07;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:207,0,197 2 179593352 rs11888217 C T 1801.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.644;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=3.610;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=-0.470;SB=-1.041e+03;SOR=0.428;VQSLOD=9.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,64:107:99:1830,0,1171 2 179595577 . G GT 640.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.05;RPA=11,12;RU=T;ReadPosRankSum=-0.771;SB=-2.620e+02;SOR=0.811;STR;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:28,30:64:99:678,0,559 2 179600563 rs2742348 G A 3031.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-1.776e+03;SOR=0.693;VQSLOD=7.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:3060,229,0 2 179606538 rs2627037 G A 1471.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.030;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=3.570;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-0.085;SB=-8.420e+02;SOR=0.409;VQSLOD=9.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,59:112:99:1500,0,1508 2 179614952 rs10803917 A G 3840.77 PASS AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-2.163e+03;SOR=0.986;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,122:122:99:3869,277,0 2 179615887 rs922984 T C 780.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.507;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=2.132;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-0.264;SB=-3.450e+02;SOR=1.022;VQSLOD=8.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,26:62:99:809,0,908 2 179615931 rs922985 C G 2100.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.44;SB=-9.730e+02;SOR=1.197;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:2129,154,0 2 179615994 rs922986 T C 1819.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.43;SB=-1.012e+03;SOR=0.966;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:65:99:1848,138,0 2 179620951 rs7585334 C T 398.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.404;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.212;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.31;ReadPosRankSum=0.669;SB=-1.480e+02;SOR=0.929;VQSLOD=6.99;culprit=QD GT:AD:DP:GQ:PL 0/1:31,17:48:99:427,0,811 2 179621477 rs6433728 C T 2282.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.44;SB=-1.082e+03;SOR=1.240;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2311,172,0 2 179623758 rs2291310 C T 966.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.386;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.973;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=0.578;SB=-4.790e+02;SOR=0.843;VQSLOD=7.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,36:62:99:995,0,689 2 179623939 rs6705594 T C 1120.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.74;SB=-3.200e+02;SOR=2.613;VQSLOD=5.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:90:1149,90,0 2 179629363 rs4894043 T C 5940.77 PASS AC=2;AF=1.00;AN=2;DB;DP=186;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SB=-3.233e+03;SOR=0.998;VQSLOD=6.13;culprit=DP GT:AD:DP:GQ:PL 1/1:0,185:186:99:5969,427,0 2 179629461 rs2291311 C T 1368.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.159;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=3.886;HaplotypeScore=5.2841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-0.541;SB=-6.330e+02;SOR=0.383;VQSLOD=9.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,53:108:99:1397,0,1467 2 179631214 rs2291312 T C 2311.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.784;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=6.885;HaplotypeScore=3.5249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=-1.213;SB=-1.333e+03;SOR=0.716;VQSLOD=3.10;culprit=FS GT:AD:DP:GQ:PL 0/1:78,87:165:99:2340,0,1948 2 179631364 rs140501763 AC A 1165.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.967;DB;DP=59;ExcessHet=3.0103;FS=1.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.76;ReadPosRankSum=0.097;SB=-2.350e+02;SOR=1.148;VQSLOD=5.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,40:59:99:1203,0,686 2 179632496 rs4893853 T C 642.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=4.045;HaplotypeScore=3.5553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=2.086;SB=-2.670e+02;SOR=1.413;VQSLOD=6.88;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:27,24:51:99:671,0,643 2 179632710 rs2291313 T C 1241.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.494;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.704;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=1.668;SB=-7.820e+02;SOR=0.584;VQSLOD=9.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:65,50:115:99:1270,0,1658 2 179633277 rs72647887 C T 367.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.321;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.63;ReadPosRankSum=0.264;SB=0.00;SOR=1.739;VQSLOD=8.37;culprit=FS GT:AD:DP:GQ:PL 0/1:5,12:17:99:396,0,150 2 179633298 rs4471922 G T 224.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.430;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=-1.124;SB=0.00;SOR=0.346;VQSLOD=10.17;culprit=FS GT:AD:DP:GQ:PL 0/1:13,8:21:99:253,0,468 2 179633644 rs4894045 G C 561.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.929;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=-0.603;SB=-1.630e+02;SOR=1.179;VQSLOD=7.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,21:45:99:590,0,770 2 179634376 rs72125115 GTA G 1543.73 PASS AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.84;RPA=8,7;RU=TA;SB=-3.490e+02;SOR=2.191;STR;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:42:99:1581,121,0 2 179634392 rs13388274 A T 715.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.108;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=61.03;MQ0=0;MQRankSum=0.394;QD=13.76;ReadPosRankSum=-0.357;SB=-2.380e+02;SOR=0.798;VQSLOD=2.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,27:52:99:744,0,712 2 179635882 rs4894047 C T 1381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.70;SB=-1.543e+02;SOR=4.073;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1410,108,0 2 179638721 rs4894048 C T 1890.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.955;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.683;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=-0.440;SB=-9.520e+02;SOR=0.792;VQSLOD=8.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,65:120:99:1919,0,1444 2 179639297 rs3816781 C T 347.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.78;SB=0.00;SOR=4.804;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:376,30,0 2 179642425 rs719201 G A 2123.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.94;SB=-1.009e+03;SOR=1.270;VQSLOD=4.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2152,157,0 2 179643886 rs2291302 A G 2411.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.242;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=3.318;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.59;ReadPosRankSum=-1.241;SB=-1.160e+03;SOR=0.533;VQSLOD=4.62;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,73:74:99:2440,153,0 2 179643934 rs2291301 A G 2431.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.00;SB=-1.322e+03;SOR=0.920;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2460,181,0 2 179644035 rs1552280 G A 2197.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.11;SB=-1.079e+03;SOR=1.179;VQSLOD=7.25;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,73:73:99:2226,166,0 2 179644855 rs10497520 T C 1025.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.203;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.874;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-1.225;SB=-6.240e+02;SOR=0.548;VQSLOD=9.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,38:75:99:1054,0,952 2 179650701 rs6715406 C T 1967.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.634;DB;DP=177;Dels=0.00;ExcessHet=3.0103;FS=11.803;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-0.037;SB=-7.130e+02;SOR=1.426;VQSLOD=2.79;culprit=FS GT:AD:DP:GQ:PL 0/1:104,73:177:99:1996,0,2953 2 179650954 rs6715901 G A 1135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.034;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-0.907;SB=-3.220e+02;SOR=0.724;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 0/1:41,42:83:99:1164,0,1128 2 179654313 rs13421990 A G 1219.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.935;HaplotypeScore=1.8519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=0.303;SB=-5.150e+02;SOR=0.544;VQSLOD=9.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,42:76:99:1248,0,895 2 179667090 rs3816849 C T 2032.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.79;SB=-7.620e+02;SOR=1.647;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2061,157,0 2 179682445 rs67494185 CAT C 1593.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.168;DB;DP=62;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=-0.902;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.56;ReadPosRankSum=-1.690;SB=-3.090e+02;SOR=0.467;VQSLOD=0.076;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,32:62:99:1631,0,1436 2 179682468 rs67301150 T TTTTC 599.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQ0=0;MQRankSum=-1.157;POSITIVE_TRAIN_SITE;QD=14.99;RPA=1,2;RU=TTTC;ReadPosRankSum=0.466;SB=-1.764e+00;SOR=1.127;STR;VQSLOD=3.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,12:43:99:637,0,908 2 179702268 rs1032283 A G 4186.77 PASS AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.71;SB=-2.370e+03;SOR=0.824;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,128:128:99:4215,313,0 2 179702577 . A AGG 600.73 PASS AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.22;RPA=2,4;RU=G;SB=-1.080e+02;SOR=2.833;STR;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:638,39,0 2 179714675 rs4894055 C T 489.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.98;SB=0.00;SOR=5.283;VQSLOD=8.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:518,39,0 2 179719966 rs1872203 A T 126.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.714;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=0.374;SB=-4.076e+01;SOR=0.105;VQSLOD=9.22;culprit=QD GT:AD:DP:GQ:PL 0/1:8,6:14:99:155,0,267 2 179732979 rs71928651 A AG 398.74 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.328;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.94;ReadPosRankSum=-2.208;SB=-6.297e+01;SOR=1.022;VQSLOD=9.03;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 1/1:2,18:31:30:436,30,0 2 179732980 rs10165177 A G 430.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.111;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.723;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=-1.697;SB=-1.490e+02;SOR=0.399;VQSLOD=9.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,17:30:99:459,0,363 2 179732981 . A T 315.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.081;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.786;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.53;ReadPosRankSum=1.124;SB=-6.100e+01;SOR=1.329;VQSLOD=5.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,14:30:99:344,0,410 2 179732997 rs10165253 A T 297.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.935;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=-1.060;SB=-8.097e+01;SOR=0.191;VQSLOD=9.69;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,12:19:99:326,0,217 2 179749501 rs1016800 A G 200.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=-1.866;SB=0.00;SOR=0.693;VQSLOD=9.16;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:229,0,222 2 179753245 rs7573293 C T 2019.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-8.770e+02;SOR=1.678;VQSLOD=5.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2048,150,0 2 179753549 rs1873164 G A 727.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-1.971e+02;SOR=2.400;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:756,57,0 2 179783696 rs12467323 C A 304.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.845;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=-1.930;SB=-2.901e+01;SOR=1.071;VQSLOD=9.04;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:14,12:26:99:333,0,410 2 179825838 rs11303440 TG T 1169.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQ0=0;MQRankSum=0.930;POSITIVE_TRAIN_SITE;QD=17.46;RPA=2,1;RU=G;ReadPosRankSum=0.000;SB=-3.930e+02;SOR=0.689;STR;VQSLOD=3.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,37:68:99:1207,0,1160 2 179826241 rs6725028 A G 522.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.662;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.43;ReadPosRankSum=-0.167;SB=-1.765e+00;SOR=1.931;VQSLOD=5.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,16:30:99:551,0,353 2 179839962 rs75704987 T C 330.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.710;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=-1.438;SB=-3.677e+01;SOR=0.446;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:7,12:19:99:359,0,220 2 179914649 rs115554157 G A 689.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=4.257;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=1.648;SB=-3.880e+02;SOR=0.293;VQSLOD=9.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,26:47:99:718,0,607 2 179974761 rs2305170 A C 1136.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.180;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=-1.249;SB=-1.930e+02;SOR=0.741;VQSLOD=8.71;culprit=FS GT:AD:DP:GQ:PL 0/1:43,40:83:99:1165,0,1187 2 179980070 rs2044479 G A 127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.777;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=-0.452;SB=-1.765e+00;SOR=1.022;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:9,5:14:99:156,0,284 2 179982125 rs3217565 AAGAT A 260.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.04;RPA=2,1;RU=AGAT;ReadPosRankSum=1.760;SB=-1.764e+00;SOR=1.179;STR;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:8,5:13:99:298,0,523 2 179988395 . T TA 272.70 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.815;DP=22;ExcessHet=3.0103;FS=10.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.64;RPA=13,14;RU=A;ReadPosRankSum=1.008;SB=-1.772e+00;SOR=5.892;STR;VQSLOD=2.60;culprit=FS GT:AD:DP:GQ:PL 1/1:2,18:22:6:309,6,0 2 179989039 rs2289992 G A 530.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.970;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=4.357;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=0.080;SB=-1.730e+02;SOR=0.133;VQSLOD=10.23;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,21:36:99:559,0,435 2 179996977 rs17363323 T C 312.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=6.163;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=1.195;SB=-1.780e+02;SOR=0.148;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:17,13:30:99:341,0,493 2 179997177 rs3214766 AT A 203.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.780;DB;DP=22;ExcessHet=3.0103;FS=6.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.19;RPA=6,5;RU=T;ReadPosRankSum=1.288;SB=-9.451e+01;SOR=0.033;STR;VQSLOD=8.93;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:22:99:241,0,252 2 180015941 rs148589684 TA T 175.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.98;RPA=3,2;RU=A;ReadPosRankSum=-0.355;SB=-3.500e+01;SOR=0.892;STR;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:213,0,154 2 180016141 rs17363449 G C 334.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=-1.082;SB=-1.350e+02;SOR=1.085;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:16,14:30:99:363,0,387 2 180036775 rs10497534 G A 558.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.136;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=-0.760;SB=-4.276e+01;SOR=0.203;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:19,19:38:99:587,0,583 2 180039068 rs13013868 C T 1826.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.50;SB=-4.310e+02;SOR=2.644;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:59:99:1855,144,0 2 180047746 rs1446673 G C 1334.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.125;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=2.305;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=-0.538;SB=-3.860e+02;SOR=0.370;VQSLOD=9.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,49:88:99:1363,0,1185 2 180047908 rs6757681 T C 4420.77 PASS AC=2;AF=1.00;AN=2;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.08;SB=-1.827e+03;SOR=1.673;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,152:152:99:4449,316,0 2 180308335 rs10171283 C G 356.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-0.462;SB=-1.060e+02;SOR=0.610;VQSLOD=10.18;culprit=FS GT:AD:DP:GQ:PL 0/1:14,13:27:99:385,0,391 2 180309762 rs3828332 G A 1118.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.261;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=3.902;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=-0.334;SB=-2.630e+02;SOR=1.450;VQSLOD=7.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,41:73:99:1147,0,794 2 180311207 rs2271760 G A 303.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=-0.922;SB=-1.481e+02;SOR=0.368;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:6,13:19:99:332,0,155 2 180348245 rs2271759 T G 230.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.114;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=-0.496;SB=0.00;SOR=0.446;VQSLOD=10.33;culprit=FS GT:AD:DP:GQ:PL 0/1:11,8:19:99:259,0,351 2 180383498 rs4567894 C A 186.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.923;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-0.933;SB=0.00;SOR=0.495;VQSLOD=10.26;culprit=FS GT:AD:DP:GQ:PL 0/1:9,7:16:99:215,0,328 2 180448403 rs73039384 T G 143.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=0.707;SB=0.00;SOR=0.446;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:172,0,236 2 180810264 rs6433818 A T 672.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.931;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=0.451;SB=-4.140e+02;SOR=0.577;VQSLOD=8.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,28:65:99:701,0,997 2 180810358 rs71425650 C T 393.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=6.778;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.56;ReadPosRankSum=-0.194;SB=-1.110e+02;SOR=1.843;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 0/1:29,17:46:99:422,0,775 2 180830958 rs6733426 A G 290.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-0.165;SB=0.00;SOR=0.540;VQSLOD=10.38;culprit=FS GT:AD:DP:GQ:PL 0/1:12,10:22:99:319,0,411 2 180835589 rs4894140 A G 2568.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.71;SB=-1.415e+03;SOR=0.768;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2597,190,0 2 180835792 rs3768837 T A 982.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.916;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.791;HaplotypeScore=1.9203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=2.463;SB=-4.460e+02;SOR=0.833;VQSLOD=6.25;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:61,39:100:99:1011,0,1508 2 180835822 rs3768838 A T 867.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.604;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=2.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.824;SB=-3.730e+02;SOR=0.354;VQSLOD=9.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,35:79:99:896,0,1147 2 180837722 rs6433820 T C 271.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.049;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=1.470;SB=0.00;SOR=0.412;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 0/1:13,9:22:99:300,0,417 2 180837806 rs6433821 T A 1421.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.295;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=2.091;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=-0.283;SB=-2.850e+02;SOR=1.075;VQSLOD=7.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,52:100:99:1450,0,1336 2 180843126 rs2367990 C T 529.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.361;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.764;HaplotypeScore=2.7041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=0.378;SB=-7.697e+01;SOR=0.250;VQSLOD=9.48;culprit=SOR GT:AD:DP:GQ:PL 0/1:9,17:26:99:558,0,300 2 180846743 rs3738943 G T 420.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.798;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=-2.329;SB=-9.000e+01;SOR=0.892;VQSLOD=8.37;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:31,17:48:99:449,0,908 2 181927310 rs56270937 AT A 139.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;RPA=11,10;RU=T;ReadPosRankSum=0.285;SB=0.00;SOR=1.802;STR;VQSLOD=8.69;culprit=FS GT:AD:DP:GQ:PL 0/1:3,8:11:52:177,0,52 2 182340714 rs34682740 A ACT 544.73 PASS AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.27;RPA=1,2;RU=CT;SB=-5.476e+01;SOR=3.442;STR;VQSLOD=7.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:14:33:582,33,0 2 182344846 . G GT 366.73 PASS AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.45;RPA=10,11;RU=T;SB=-6.851e+01;SOR=2.448;STR;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:44:404,44,0 2 182346544 rs2305590 T C 538.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.67;SB=0.00;SOR=5.670;VQSLOD=8.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:567,48,0 2 182347072 rs2305588 T C 1770.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7404;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.22;SB=-4.176e+01;SOR=6.399;VQSLOD=2.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1799,141,0 2 182350489 rs17290693 T C 912.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.60;SB=-1.383e+02;SOR=3.258;VQSLOD=7.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:72:941,72,0 2 182350743 rs155103 A G 1870.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-5.270e+02;SOR=2.468;VQSLOD=7.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1899,138,0 2 182359613 rs165419 G A 843.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.75;SB=-1.155e+02;SOR=3.528;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:66:872,66,0 2 182360182 rs2305586 T C 752.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.880;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=8.747;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.551;SB=-5.070e+02;SOR=0.113;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 0/1:20,35:55:99:781,0,625 2 182374328 rs3816521 T A 1086.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.126;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.713;HaplotypeScore=2.6884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=-0.340;SB=-5.620e+02;SOR=0.314;VQSLOD=9.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,46:72:99:1115,0,725 2 182374534 rs1143674 A G 756.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.229;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=1.206;SB=-8.100e+01;SOR=0.655;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:29,28:57:99:785,0,869 2 182374553 rs2305584 A T 676.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.989;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.169;HaplotypeScore=3.6041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=-1.985;SB=-2.801e+01;SOR=1.765;VQSLOD=5.13;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:22,22:44:99:705,0,653 2 182374567 rs2305583 A G 464.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.295;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.110;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-0.634;SB=-9.732e-01;SOR=2.613;VQSLOD=6.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,15:35:99:493,0,543 2 182376546 rs1466109 T G 1975.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-1.011e+03;SOR=1.092;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2004,147,0 2 182387133 rs7602504 A G 614.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.535;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-1.007;SB=-1.380e+02;SOR=0.675;VQSLOD=9.88;culprit=FS GT:AD:DP:GQ:PL 0/1:26,21:47:99:643,0,723 2 182392143 rs56095368 G C 1763.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.603;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=6.913;HaplotypeScore=1.7987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=1.283;SB=-9.350e+02;SOR=0.997;VQSLOD=4.33;culprit=FS GT:AD:DP:GQ:PL 0/1:58,66:124:99:1792,0,1663 2 182395345 rs1143676 G A 1400.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.187;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=5.289;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=0.422;SB=-7.020e+02;SOR=0.900;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 0/1:83,53:136:99:1429,0,2067 2 182399097 rs7562325 T C 515.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.996;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.46;ReadPosRankSum=-0.880;SB=-2.730e+02;SOR=0.941;VQSLOD=7.16;culprit=QD GT:AD:DP:GQ:PL 0/1:36,25:61:99:544,0,879 2 182399497 rs5836796 A ATT 268.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;DB;DP=37;ExcessHet=3.0103;FS=1.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.46;RPA=11,13;RU=T;ReadPosRankSum=-0.661;SB=-1.250e+02;SOR=0.355;STR;VQSLOD=9.15;culprit=QD GT:AD:DP:GQ:PL 0/1:20,16:37:99:306,0,625 2 182399638 rs2124443 A G 1352.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-5.770e+02;SOR=1.714;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:46:99:1381,99,0 2 182399685 rs41265949 C T 340.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.738;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=-1.489;SB=-1.270e+02;SOR=1.022;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:12,15:27:99:369,0,280 2 182402790 rs6747500 G A 471.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.079;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.576;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=-0.912;SB=-1.670e+02;SOR=1.863;VQSLOD=5.77;culprit=FS GT:AD:DP:GQ:PL 0/1:14,18:32:99:500,0,290 2 182403222 rs138386485 TGCCTCTAGAACA T 1299.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.459;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-1.015;SB=-1.470e+02;SOR=0.657;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:15,9:26:99:1337,0,2311 2 182403792 rs67616793 A AT 5102.73 PASS AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.56;SB=-1.490e+03;SOR=1.848;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:5140,313,0 2 182403851 rs10180793 G A 4542.77 PASS AC=2;AF=1.00;AN=2;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.12;SB=-2.674e+03;SOR=0.948;VQSLOD=5.33;culprit=DP GT:AD:DP:GQ:PL 1/1:0,156:156:99:4571,331,0 2 182413259 rs12997453 A G 461.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.389;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=-0.088;SB=-5.000e+01;SOR=1.981;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 0/1:13,16:29:99:490,0,330 2 182413602 rs13003064 A T 1291.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.642;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.942;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-0.146;SB=-3.630e+02;SOR=0.517;VQSLOD=9.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,45:93:99:1320,0,1381 2 182521578 rs1473295 G A 556.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.048;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.19;ReadPosRankSum=1.346;SB=-3.630e+02;SOR=0.446;VQSLOD=9.24;culprit=QD GT:AD:DP:GQ:PL 0/1:40,28:68:99:585,0,977 2 182543455 rs1801262 T C 442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.181;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.780;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=-0.070;SB=-2.680e+02;SOR=0.735;VQSLOD=5.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,18:39:99:471,0,497 2 182763586 rs3731693 G A 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=1.913;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.40;ReadPosRankSum=-0.049;SB=-1.000e+02;SOR=0.330;VQSLOD=9.51;culprit=QD GT:AD:DP:GQ:PL 0/1:10,7:17:99:171,0,231 2 182765375 rs79209485 A G 622.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.470;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=2.026;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.30;ReadPosRankSum=2.533;SB=-1.381e+02;SOR=0.169;VQSLOD=7.17;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:14,22:36:99:651,0,409 2 182775287 rs79765809 T C 671.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.329;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=2.205;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=1.161;SB=-3.300e+02;SOR=0.376;VQSLOD=9.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,26:70:99:700,0,1091 2 182780307 rs75716247 G A 1375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.916;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=2.871;HaplotypeScore=1.9153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=1.233;SB=-7.290e+02;SOR=1.077;VQSLOD=7.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,53:90:99:1404,0,1064 2 182783848 rs3815877 G A 344.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=3.757;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.15;ReadPosRankSum=-0.496;SB=-1.765e+00;SOR=2.303;VQSLOD=5.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,11:19:99:373,0,268 2 182783994 rs2288330 C A 1387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=1.408;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=1.524;SB=-7.880e+02;SOR=0.539;VQSLOD=8.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:80,56:136:99:1416,0,1921 2 182792984 rs2303554 T A 968.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=0.657;SB=-4.970e+02;SOR=0.607;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:23,40:63:99:997,0,495 2 182794534 rs1051085 G A 305.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-3.677e+01;SOR=3.258;VQSLOD=7.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:334,27,0 2 182928408 . G A 990.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.611;DP=76;Dels=0.00;ExcessHet=3.0103;FS=8.341;HaplotypeScore=2.6949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.04;ReadPosRankSum=0.427;SB=-5.550e+02;SOR=0.216;VQSLOD=5.37;culprit=FS GT:AD:DP:GQ:PL 0/1:35,41:76:99:1019,0,970 2 182928555 rs1196161 G C 3197.84 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-1.759e+03;SOR=1.072;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:3226,229,0 2 182981846 rs1882211 G C 370.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.29;SB=0.00;SOR=4.804;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:399,30,0 2 182981968 rs1882212 A G 1422.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.27;SB=-4.730e+02;SOR=2.160;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1451,114,0 2 183051421 . A T 248.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.885;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=-1.815;SB=0.00;SOR=0.693;VQSLOD=9.29;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:277,0,341 2 183051449 rs10930991 T C 59.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.98;ReadPosRankSum=-0.259;SB=0.00;SOR=0.148;VQSLOD=9.18;culprit=QD GT:AD:DP:GQ:PL 0/1:9,3:12:88:88,0,295 2 183066377 rs72168532 C CAA,CA 949.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.557;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.70;MQ0=0;MQRankSum=0.429;POSITIVE_TRAIN_SITE;QD=24.35;RPA=13,15,14;RU=A;ReadPosRankSum=-0.651;SB=-2.830e+02;SOR=0.843;STR;VQSLOD=3.39;culprit=MQRankSum GT:AD:DP:GQ:PL 1/2:1,21,17:46:99:987,355,300,419,0,337 2 183088584 rs3754929 G A 3434.77 PASS AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-1.395e+03;SOR=1.757;VQSLOD=7.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,116:116:99:3463,253,0 2 183106758 rs2568667 T G 506.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.15;SB=-2.381e+02;SOR=1.493;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:39:535,39,0 2 183129242 rs10930999 A G 433.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.409;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=1.644;SB=0.00;SOR=0.963;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:10,13:23:99:462,0,279 2 183584755 rs6729801 G A 920.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.644;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.41;ReadPosRankSum=1.937;SB=-2.160e+02;SOR=0.706;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:12,31:43:99:949,0,261 2 183593697 rs288280 C T 1009.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.796;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=0.902;SB=-4.640e+02;SOR=0.818;VQSLOD=8.55;culprit=FS GT:AD:DP:GQ:PL 0/1:48,41:89:99:1038,0,1161 2 183597063 rs288282 T G 263.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=1.074;SB=0.00;SOR=1.445;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:99:292,0,112 2 183597318 rs825660 A G 546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.856;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=3.819;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.19;ReadPosRankSum=0.298;SB=-1.020e+02;SOR=1.445;VQSLOD=5.86;culprit=QD GT:AD:DP:GQ:PL 0/1:54,22:76:99:575,0,1306 2 183616592 rs3098359 C T 2196.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-6.290e+02;SOR=2.165;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2225,166,0 2 183616748 rs3115425 G C 989.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.726;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=20.243;HaplotypeScore=5.7018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=-0.187;SB=-9.300e+01;SOR=2.633;VQSLOD=3.30;culprit=FS GT:AD:DP:GQ:PL 0/1:53,34:87:99:1018,0,1398 2 183622319 rs141152570 AATAAT A 604.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=0.849;POSITIVE_TRAIN_SITE;QD=24.19;RPA=2,1;RU=ATAAT;ReadPosRankSum=-1.044;SB=-3.577e+01;SOR=0.527;STR;VQSLOD=3.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,10:15:99:642,0,326 2 183622547 rs288334 T G 605.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.112;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=5.519;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.023;SB=-9.200e+01;SOR=1.981;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 0/1:22,22:44:99:634,0,565 2 183627504 rs192618 A G 377.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.966;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=1.055;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.56;ReadPosRankSum=-0.243;SB=-2.560e+02;SOR=0.488;VQSLOD=8.74;culprit=QD GT:AD:DP:GQ:PL 0/1:50,18:68:99:406,0,1270 2 183627619 rs190830 C G 184.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.586;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.60;ReadPosRankSum=-0.425;SB=-5.150e-01;SOR=1.345;VQSLOD=5.72;culprit=QD GT:AD:DP:GQ:PL 0/1:21,7:28:99:213,0,675 2 183793383 rs9333279 T C 335.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.332;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.791;SB=0.00;SOR=0.404;VQSLOD=9.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,11:27:99:364,0,533 2 183793398 rs9333280 A G 389.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.819;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.802;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=-0.096;SB=-4.176e+01;SOR=0.110;VQSLOD=9.63;culprit=SOR GT:AD:DP:GQ:PL 0/1:21,15:36:99:418,0,713 2 183794728 rs13009031 C T 247.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.977;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-0.492;SB=-6.900e+01;SOR=0.307;VQSLOD=10.21;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:276,0,317 2 183799558 rs9288088 G C 208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.891;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.583;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.46;ReadPosRankSum=0.745;SB=-1.220e+02;SOR=0.967;VQSLOD=6.46;culprit=QD GT:AD:DP:GQ:PL 0/1:18,10:28:99:237,0,455 2 183800060 rs144374101 A G 221.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.028;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.53;ReadPosRankSum=-0.416;SB=-1.560e+02;SOR=0.730;VQSLOD=9.32;culprit=QD GT:AD:DP:GQ:PL 0/1:15,11:26:99:250,0,405 2 183817724 rs35971883 A G 316.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=2.917;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=1.128;SB=-1.750e+02;SOR=0.346;VQSLOD=8.85;culprit=QD GT:AD:DP:GQ:PL 0/1:21,14:35:99:345,0,569 2 183817957 rs66829551 T A 676.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=3.775;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=0.312;SB=-4.010e+02;SOR=0.612;VQSLOD=5.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,28:52:99:705,0,607 2 183827018 rs2271671 G A 733.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.793;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.426;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=0.576;SB=-4.710e+02;SOR=0.343;VQSLOD=10.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,29:67:99:762,0,1034 2 183829635 rs12994001 C T 128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.20;ReadPosRankSum=-0.321;SB=0.00;SOR=0.307;VQSLOD=10.13;culprit=FS GT:AD:DP:GQ:PL 0/1:9,5:14:99:157,0,332 2 183848114 rs1400130 T C 798.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=-0.968;SB=-4.100e+02;SOR=0.821;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:33,33:66:99:827,0,744 2 183851058 rs10185562 C T 637.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.57;SB=-3.677e+01;SOR=4.514;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:666,54,0 2 183859473 rs16823914 T C 497.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=1.700;SB=-1.550e+02;SOR=0.760;VQSLOD=8.82;culprit=FS GT:AD:DP:GQ:PL 0/1:19,20:39:99:526,0,483 2 183860298 rs10497617 G A 416.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.738;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=0.838;SB=0.00;SOR=0.963;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:10,13:23:99:445,0,336 2 183960522 rs13399265 T C 386.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=0.00;SOR=4.804;VQSLOD=7.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:415,30,0 2 183988984 rs2705719 C G 707.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.84;SB=0.00;SOR=5.994;VQSLOD=7.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:736,57,0 2 183995115 rs370707374 CT C 314.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQ0=0;MQRankSum=1.979;QD=9.84;RPA=19,18;RU=T;ReadPosRankSum=1.142;SB=-2.478e+01;SOR=1.802;STR;VQSLOD=1.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,27:32:32:352,0,32 2 183995742 rs925803 A C 1413.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-6.400e+02;SOR=1.464;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1442,102,0 2 184022015 rs3791249 G C 632.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-1.175e+02;SOR=2.636;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:48:661,48,0 2 184125573 rs898946 A G 427.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.52;SB=-1.851e+02;SOR=1.473;VQSLOD=5.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:33:456,33,0 2 184125985 rs1979359 A G 1603.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-4.810e+02;SOR=1.958;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1632,120,0 2 185798504 rs4667000 A C 402.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.820;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=-0.489;SB=-1.410e+02;SOR=0.573;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:12,14:26:99:431,0,310 2 185800905 rs12476147 A T 599.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.177;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=-0.049;SB=-3.390e+02;SOR=0.625;VQSLOD=7.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,23:43:99:628,0,522 2 185801747 rs4667001 G A 797.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.729;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=6.265;HaplotypeScore=2.8926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-1.753;SB=-1.040e+02;SOR=1.786;VQSLOD=5.21;culprit=FS GT:AD:DP:GQ:PL 0/1:38,29:67:99:826,0,1183 2 185801755 rs4667002 A G 610.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.961;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=6.601;HaplotypeScore=2.8926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-0.398;SB=-6.900e+01;SOR=1.880;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 0/1:38,24:62:99:639,0,1104 2 185802211 . C CACA 888.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DP=46;ExcessHet=3.0103;FS=4.452;MLEAC=1;MLEAF=0.500;MQ=60.24;MQ0=0;MQRankSum=1.248;POSITIVE_TRAIN_SITE;QD=20.20;RPA=1,2;RU=ACA;ReadPosRankSum=-0.191;SB=-3.780e+02;SOR=0.648;STR;VQSLOD=0.561;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,18:46:99:926,0,1368 2 185802243 rs1366842 C A 645.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.363;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.039;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=0.305;SB=-3.270e+02;SOR=0.459;VQSLOD=9.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,23:61:99:674,0,1082 2 185802363 rs12477430 A G 696.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.50;ReadPosRankSum=0.713;SB=-3.730e+02;SOR=0.519;VQSLOD=9.26;culprit=QD GT:AD:DP:GQ:PL 0/1:50,32:82:99:725,0,1351 2 186156367 rs13408565 T C 57.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=13.424;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.81;ReadPosRankSum=-1.960;SB=-3.436e-02;SOR=2.781;VQSLOD=3.79;culprit=QD GT:AD:DP:GQ:PL 0/1:9,3:12:86:86,0,292 2 186156401 rs13408663 T C 58.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=14.564;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.52;ReadPosRankSum=1.859;SB=-1.726e-02;SOR=2.780;VQSLOD=3.49;culprit=QD GT:AD:DP:GQ:PL 0/1:10,3:13:87:87,0,295 2 186412410 rs61751900 A G 363.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.991;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQ0=0;MQRankSum=0.415;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=0.091;SB=0.00;SOR=1.179;VQSLOD=3.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,11:18:99:392,0,208 2 186610344 rs11884004 T G 436.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.942;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=0.250;SB=-2.060e+02;SOR=0.693;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:13,19:32:99:465,0,340 2 186610388 rs17813736 G A 260.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-0.222;SB=-5.800e+01;SOR=0.976;VQSLOD=9.91;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:289,0,197 2 186611566 rs6758484 C A 529.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.43;SB=-1.205e+02;SOR=2.833;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:42:558,42,0 2 186611938 rs12618129 G A 168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.788;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.44;ReadPosRankSum=0.684;SB=-5.600e+01;SOR=1.329;VQSLOD=6.31;culprit=QD GT:AD:DP:GQ:PL 0/1:11,9:20:99:197,0,297 2 186612161 rs77069614 C G 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.595;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.74;ReadPosRankSum=-0.753;SB=-5.900e+01;SOR=1.022;VQSLOD=9.19;culprit=QD GT:AD:DP:GQ:PL 0/1:13,7:20:99:203,0,298 2 186625670 rs10547921 TA T 165.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;DB;DP=40;ExcessHet=3.0103;FS=1.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=4.14;RPA=14,13;RU=A;ReadPosRankSum=0.823;SB=-2.601e+01;SOR=1.201;STR;VQSLOD=3.34;culprit=QD GT:AD:DP:GQ:PL 0/1:27,13:40:99:203,0,569 2 186625770 rs7562137 A G 732.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.564;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=1.875;SB=-3.330e+02;SOR=0.743;VQSLOD=8.80;culprit=FS GT:AD:DP:GQ:PL 0/1:32,28:60:99:761,0,764 2 186625880 rs10170781 C G 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.781;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=-1.467;SB=-3.577e+01;SOR=0.330;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:7,10:17:99:309,0,239 2 186627943 rs17228441 T C 623.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.944;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.893;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.00;ReadPosRankSum=0.228;SB=-4.640e+02;SOR=0.504;VQSLOD=8.82;culprit=QD GT:AD:DP:GQ:PL 0/1:49,29:78:99:652,0,1313 2 186653546 rs3752671 G A 1172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-1.017;SB=-7.610e+02;SOR=0.733;VQSLOD=8.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,49:113:99:1201,0,1611 2 186654592 rs992822 A G 596.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.174;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.134;HaplotypeScore=2.7295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=1.077;SB=-3.030e+02;SOR=0.791;VQSLOD=6.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,20:48:99:625,0,774 2 186654867 rs79762465 G C 1208.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=4.328;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=1.458;SB=-7.480e+02;SOR=0.332;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:38,43:81:99:1237,0,1225 2 186655726 rs10931199 G A 1587.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-8.340e+02;SOR=0.829;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1616,120,0 2 186656657 rs10173807 C T 2697.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5342;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-1.700e+03;SOR=0.807;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:92:99:2726,202,0 2 186656956 rs17229201 T C 912.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.142;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.810;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=-0.004;SB=-5.500e+02;SOR=0.798;VQSLOD=7.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,41:84:99:941,0,1281 2 186657089 rs17229222 C A 357.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.856;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.170;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.45;ReadPosRankSum=-1.602;SB=-1.760e+02;SOR=0.895;VQSLOD=6.38;culprit=QD GT:AD:DP:GQ:PL 0/1:33,15:48:99:386,0,965 2 186658056 rs60029104 G A 643.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.428;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=5.706;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.943;SB=-2.100e+02;SOR=1.508;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 0/1:30,23:53:99:672,0,855 2 186658438 rs10490391 C T 1142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.649;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=1.696;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-0.390;SB=-5.490e+02;SOR=0.925;VQSLOD=7.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,44:94:99:1171,0,1340 2 186658565 rs10490392 G T 431.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.073;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=-0.811;SB=-1.560e+02;SOR=0.610;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:25,15:40:99:460,0,716 2 186659359 rs2161036 G T 548.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.937;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=15.984;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=-1.378;SB=-2.090e+02;SOR=0.961;VQSLOD=5.06;culprit=FS GT:AD:DP:GQ:PL 0/1:34,21:55:99:577,0,1064 2 186661673 rs55938253 A G 1108.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.952;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=1.791;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-1.303;SB=-6.970e+02;SOR=0.487;VQSLOD=9.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,42:83:99:1137,0,1040 2 186664473 rs11686997 T C 195.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=11.129;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.16;ReadPosRankSum=-1.407;SB=-7.900e+01;SOR=1.414;VQSLOD=5.02;culprit=FS GT:AD:DP:GQ:PL 0/1:14,10:24:99:224,0,395 2 186664963 rs10931200 C A 737.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.225;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.900;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=-1.928;SB=-4.430e+02;SOR=0.558;VQSLOD=9.10;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:41,31:72:99:766,0,1194 2 186665432 rs36004074 G A 2185.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.263;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=7.185;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-1.183;SB=-1.362e+03;SOR=0.530;VQSLOD=5.10;culprit=FS GT:AD:DP:GQ:PL 0/1:63,88:151:99:2214,0,1751 2 186665824 rs11695215 A G 1438.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.270;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=1.594;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=-1.384;SB=-9.140e+02;SOR=0.509;VQSLOD=9.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,54:103:99:1467,0,1179 2 186667121 rs7605884 T C 1961.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.406;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=1.253;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-1.724;SB=-1.228e+03;SOR=0.571;VQSLOD=7.14;culprit=DP GT:AD:DP:GQ:PL 0/1:83,75:158:99:1990,0,2201 2 186667360 rs7565527 A C 1395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.235;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=1.407;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=1.375;SB=-7.150e+02;SOR=0.773;VQSLOD=7.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:84,51:135:99:1424,0,2156 2 186670104 rs7576532 A C 2476.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-1.371e+03;SOR=0.887;VQSLOD=7.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2505,184,0 2 186670780 rs16827154 T A 419.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.783;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=5.130;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=0.371;SB=-2.010e+02;SOR=0.220;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 0/1:23,16:39:99:448,0,695 2 186670979 rs4666689 T C 812.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.050;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=5.208;HaplotypeScore=2.9001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=-1.045;SB=-4.550e+02;SOR=0.965;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 0/1:28,32:60:99:841,0,894 2 186671357 rs17826534 G A 475.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.597;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=11.780;HaplotypeScore=3.7365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=-0.083;SB=-2.010e+02;SOR=0.826;VQSLOD=5.39;culprit=FS GT:AD:DP:GQ:PL 0/1:24,20:45:99:504,0,679 2 186671912 rs1862066 G A 756.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=4.494;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=1.715;SB=-3.910e+02;SOR=0.958;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 0/1:43,31:74:99:785,0,1097 2 186678241 . A AT 596.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.13;RPA=4,5;RU=T;ReadPosRankSum=0.139;SB=-1.470e+02;SOR=0.941;STR;VQSLOD=8.63;culprit=FS GT:AD:DP:GQ:PL 0/1:15,22:37:99:634,0,375 2 186678877 rs17230036 A G 973.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.201;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=1.162;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=2.039;SB=-1.730e+02;SOR=0.919;VQSLOD=7.33;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:33,34:67:99:1002,0,879 2 186678887 rs2161035 T C 728.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.046;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-2.675;SB=-1.950e+02;SOR=0.551;VQSLOD=8.67;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:28,29:57:99:757,0,845 2 186680041 rs2287606 G T 127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.831;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=1.248;SB=-1.765e+00;SOR=1.609;VQSLOD=8.56;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:156,0,167 2 186697876 rs1468999 A G 1523.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.75;SB=-6.100e+02;SOR=1.708;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1552,111,0 2 187364878 rs4144785 A G 152.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.757;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.632;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=0.767;SB=-2.901e+01;SOR=2.266;VQSLOD=6.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,6:13:99:181,0,142 2 187365421 rs13009640 G T 63.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.80;ReadPosRankSum=-1.532;SB=-4.176e+01;SOR=0.120;VQSLOD=8.30;culprit=QD GT:AD:DP:GQ:PL 0/1:6,5:11:92:92,0,219 2 187369013 . T TG 261.75 PASS AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.72;RPA=4,5;RU=G;SB=0.00;SOR=4.407;STR;VQSLOD=8.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,8:11:24:299,24,0 2 187455278 rs9333287 C T 606.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.338;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=-0.146;SB=-1.700e+02;SOR=0.880;VQSLOD=8.50;culprit=FS GT:AD:DP:GQ:PL 0/1:20,23:43:99:635,0,489 2 187487160 rs9333288 G A 841.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.637;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=0.933;SB=-3.600e+02;SOR=0.702;VQSLOD=9.11;culprit=FS GT:AD:DP:GQ:PL 0/1:34,37:71:99:870,0,927 2 187487269 rs6741369 G T 267.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=0.754;SB=0.00;SOR=0.804;VQSLOD=10.14;culprit=FS GT:AD:DP:GQ:PL 0/1:8,9:17:99:296,0,255 2 187490371 rs2197787 T G 144.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.24;ReadPosRankSum=-2.071;SB=-9.732e-01;SOR=1.284;VQSLOD=8.65;culprit=QD GT:AD:DP:GQ:PL 0/1:14,6:20:99:173,0,407 2 187490405 rs199552451 TGAGA T 389.84 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.34;RPA=6,4;RU=GA;ReadPosRankSum=0.157;SB=0.00;SOR=2.833;STR;VQSLOD=8.19;culprit=FS GT:AD:DP:GQ:PL 0/1:1,7:11:16:427,0,16 2 187498107 rs9333289 T C 2044.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.105;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=2.880;HaplotypeScore=2.8932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=0.633;SB=-1.287e+03;SOR=0.876;VQSLOD=7.69;culprit=DP GT:AD:DP:GQ:PL 0/1:72,84:156:99:2073,0,1718 2 187501682 rs56136540 G A 748.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.672;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-0.851;SB=-1.260e+02;SOR=0.653;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 0/1:28,27:55:99:777,0,851 2 187503226 rs4667108 T C 1353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.650;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.758;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-0.093;SB=-7.080e+02;SOR=0.836;VQSLOD=8.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,52:100:99:1382,0,1058 2 187519338 rs9333290 G T 1001.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.274;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=5.883;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=-0.147;SB=-3.170e+02;SOR=0.245;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:33,37:70:99:1030,0,907 2 187521260 rs3738919 C A 396.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.404;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=-1.307;SB=0.00;SOR=0.770;VQSLOD=10.28;culprit=FS GT:AD:DP:GQ:PL 0/1:12,13:25:99:425,0,424 2 187528635 rs3816386 A G 659.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.618;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=0.256;SB=-1.460e+02;SOR=0.643;VQSLOD=10.09;culprit=FS GT:AD:DP:GQ:PL 0/1:13,22:35:99:688,0,380 2 187528695 rs55767908 A G 135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-0.550;SB=0.00;SOR=0.446;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:164,0,243 2 187532010 rs41265951 G T 1666.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.977;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=1.429;HaplotypeScore=2.6732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.629;SB=-9.690e+02;SOR=0.549;VQSLOD=8.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,71:127:99:1695,0,1473 2 187532417 rs2230616 G A 3500.77 PASS AC=2;AF=1.00;AN=2;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.23;SB=-1.747e+03;SOR=1.342;VQSLOD=5.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,124:124:99:3529,262,0 2 187533368 rs11685758 C T 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.60;ReadPosRankSum=-0.669;SB=0.00;SOR=1.609;VQSLOD=9.86;culprit=FS GT:AD:DP:GQ:PL 0/1:4,9:13:99:309,0,123 2 187540732 rs3213964 G A 322.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.623;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=0.066;SB=-7.897e+01;SOR=0.430;VQSLOD=10.35;culprit=FS GT:AD:DP:GQ:PL 0/1:10,12:22:99:351,0,303 2 187543374 rs1839123 C T 2658.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.606;DB;DP=199;Dels=0.00;ExcessHet=3.0103;FS=2.482;HaplotypeScore=4.8911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=0.472;SB=-1.228e+03;SOR=0.890;VQSLOD=6.71;culprit=DP GT:AD:DP:GQ:PL 0/1:99,100:199:99:2687,0,2749 2 187559047 . G GCAA 883.73 PASS AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;RPA=5,6;RU=CAA;SB=-3.280e+02;SOR=0.976;STR;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:32:87:921,87,0 2 187611748 rs2247924 G A 970.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-2.800e+02;SOR=2.376;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:75:999,75,0 2 187626338 rs13026081 C T 265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.858;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=4.875;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.04;ReadPosRankSum=-2.162;SB=-1.200e+02;SOR=1.027;VQSLOD=4.93;culprit=QD GT:AD:DP:GQ:PL 0/1:31,13:44:99:294,0,865 2 187698037 rs7609183 G A 500.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.30;SB=-2.800e+02;SOR=0.941;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:39:529,39,0 2 187713396 rs3100021 C A 401.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.80;SB=0.00;SOR=4.977;VQSLOD=8.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:430,33,0 2 187713412 rs3114951 C T 664.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.23;SB=0.00;SOR=5.892;VQSLOD=8.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:693,54,0 2 188216783 rs858744 C T 1560.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.53;SB=-5.530e+02;SOR=1.662;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1589,126,0 2 188216807 rs858745 T C 1837.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.28;SB=-6.230e+02;SOR=1.802;VQSLOD=5.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1866,138,0 2 188245640 rs1511877 G A 944.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-6.997e+01;SOR=4.255;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:75:973,75,0 2 188250301 rs698577 T A 564.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.72;SB=-3.390e+02;SOR=0.793;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:45:593,45,0 2 188332692 rs8176592 A G 2092.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.88;SB=-3.250e+02;SOR=3.575;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:2121,157,0 2 188343497 rs7586970 T C 1951.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.50;SB=-9.640e+02;SOR=1.306;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:1980,141,0 2 189448896 rs2048138 A T 1179.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.05;SB=-1.553e+02;SOR=3.500;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:93:1208,93,0 2 189849330 rs16830973 A G 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=-1.362;SB=0.00;SOR=0.859;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:202,0,161 2 189849773 rs3106796 A G 322.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.786;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=6.023;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=0.397;SB=-1.480e+02;SOR=0.440;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 0/1:21,11:32:99:351,0,669 2 189855674 rs2203601 T A 493.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=-0.016;SB=-2.250e+02;SOR=0.807;VQSLOD=10.36;culprit=FS GT:AD:DP:GQ:PL 0/1:16,20:36:99:522,0,401 2 189857993 rs12693525 T C 897.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=4.441;HaplotypeScore=4.2541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=-0.247;SB=-3.640e+02;SOR=1.274;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 0/1:45,36:82:99:926,0,1089 2 189860996 rs62181728 G A 331.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.657;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=-0.026;SB=-9.200e+01;SOR=1.179;VQSLOD=7.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,15:26:99:360,0,299 2 189861029 . T TACAC 373.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;DP=21;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.75;ReadPosRankSum=1.446;SB=-1.130e+02;SOR=1.093;VQSLOD=5.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,8:21:99:411,0,467 2 189861031 rs62181730 T C 299.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.9892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.63;ReadPosRankSum=-0.234;SB=-1.590e+02;SOR=0.693;VQSLOD=8.62;culprit=FS GT:AD:DP:GQ:PL 0/1:9,13:22:99:328,0,286 2 189862203 rs3134654 C T 503.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.58;SB=-2.021e+02;SOR=1.473;VQSLOD=5.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:532,42,0 2 189863389 rs13306272 C T 603.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=-0.379;SB=-2.830e+02;SOR=0.582;VQSLOD=9.98;culprit=FS GT:AD:DP:GQ:PL 0/1:26,24:50:99:632,0,706 2 189864080 rs1800255 G A 419.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.396;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=-0.532;SB=-2.080e+02;SOR=0.776;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:26,20:46:99:448,0,705 2 189866199 rs2271682 T A 1623.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.64;SB=-9.800e+02;SOR=0.808;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1652,120,0 2 189867205 rs3106801 G A 252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.553;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-0.449;SB=-1.765e+00;SOR=1.609;VQSLOD=8.97;culprit=FS GT:AD:DP:GQ:PL 0/1:10,9:19:99:281,0,314 2 189867844 rs3736489 T A 378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.04;ReadPosRankSum=-0.394;SB=-1.270e+02;SOR=0.495;VQSLOD=9.55;culprit=FS GT:AD:DP:GQ:PL 0/1:5,13:18:99:407,0,104 2 189867882 rs3736490 C T 262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.77;ReadPosRankSum=0.424;SB=-1.710e+02;SOR=0.693;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:4,10:14:92:291,0,92 2 189875421 rs1516446 T G 3689.77 PASS AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.24;SB=-2.160e+03;SOR=0.945;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,122:122:99:3718,265,0 2 189875695 rs3768660 T G 425.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.723;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=-1.891;SB=-6.700e+01;SOR=0.656;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:9,14:23:99:454,0,235 2 189899541 rs4666770 T C 446.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.64;SB=0.00;SOR=5.136;VQSLOD=8.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:475,36,0 2 189899572 rs7420715 T C 845.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.29;SB=-3.876e+01;SOR=4.892;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:66:874,66,0 2 189901295 rs12693526 G A 2748.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.55;SB=-3.790e+02;SOR=3.698;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2777,211,0 2 189907937 rs6434312 A G 2704.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;SB=-1.428e+03;SOR=0.990;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2733,199,0 2 189910066 rs111268949 ATG A 165.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.05;RPA=12,11;RU=TG;ReadPosRankSum=-0.400;SB=-1.764e+00;SOR=1.230;STR;VQSLOD=7.75;culprit=FS GT:AD:DP:GQ:PL 0/1:9,6:16:99:203,0,342 2 189918337 rs6750027 T C 501.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.61;SB=0.00;SOR=5.421;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:530,42,0 2 189918787 rs6738371 C T 1994.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=-1.191e+03;SOR=0.790;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2023,153,0 2 189923104 rs7556733 A G 1887.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-7.420e+02;SOR=1.812;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1916,138,0 2 189923401 rs10178611 T C 1185.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.24;SB=-3.390e+02;SOR=1.765;VQSLOD=5.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:31:90:1214,90,0 2 189923434 rs12989558 A C 1044.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.19;SB=-4.880e+02;SOR=0.836;VQSLOD=4.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:81:1073,81,0 2 189923630 rs5837121 AT A 1046.87 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.680;DB;DP=56;ExcessHet=3.0103;FS=1.931;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;MQRankSum=0.391;POSITIVE_TRAIN_SITE;QD=20.13;RPA=12,11;RU=T;ReadPosRankSum=-0.342;SB=-4.540e+02;SOR=0.336;STR;VQSLOD=0.563;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:5,47:56:15:1084,15,0 2 189925548 rs6414122 T A 876.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-3.880e+02;SOR=1.460;VQSLOD=5.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:66:905,66,0 2 189927506 rs7424947 C G 794.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.44;SB=-1.235e+02;SOR=2.387;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:66:823,66,0 2 189932764 rs35830636 G A 2285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.120;DB;DP=188;Dels=0.00;ExcessHet=3.0103;FS=6.167;HaplotypeScore=3.7329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-0.015;SB=-1.428e+03;SOR=0.439;VQSLOD=5.89;culprit=DP GT:AD:DP:GQ:PL 0/1:99,89:188:99:2314,0,2741 2 189932831 rs2229495 T C 4458.77 PASS AC=2;AF=1.00;AN=2;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.40;SB=-2.186e+03;SOR=1.163;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,142:142:99:4487,349,0 2 189936687 rs6434317 T G 909.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-1.633e+02;SOR=2.833;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:69:938,69,0 2 189943121 rs67456396 GA G 173.70 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.567;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.79;RPA=12,11;RU=A;ReadPosRankSum=0.953;SB=0.00;SOR=3.442;STR;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:1,10:11:6:210,6,0 2 189974958 rs4128539 G T 2734.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=-5.480e+02;SOR=3.042;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2763,208,0 2 190176696 rs13004722 T C 424.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.32;SB=-2.441e+02;SOR=1.112;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:33:453,33,0 2 190313396 rs6738193 A G 497.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.20;SB=-3.250e+02;SOR=1.022;VQSLOD=4.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:39:526,39,0 2 190319966 . C CA 897.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.516;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.26;RPA=10,11;RU=A;ReadPosRankSum=-0.706;SB=-9.151e+01;SOR=2.147;STR;VQSLOD=7.87;culprit=FS GT:AD:DP:GQ:PL 1/1:2,35:38:74:935,74,0 2 190319990 rs1224958 A G 2006.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=-5.600e+02;SOR=2.419;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:62:99:2035,147,0 2 190322196 rs10497700 T C 584.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.46;SB=0.00;SOR=5.549;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:613,45,0 2 190323530 rs1157910 A G 2840.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-1.126e+03;SOR=1.744;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2869,226,0 2 190327076 rs2304703 C T 713.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.48;SB=0.00;SOR=5.994;VQSLOD=4.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:742,57,0 2 190327126 rs2304702 C G 1128.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-3.530e+02;SOR=2.242;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:84:1157,84,0 2 190331057 rs77852112 A G 795.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.415;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.53;ReadPosRankSum=0.798;SB=0.00;SOR=2.019;VQSLOD=8.24;culprit=FS GT:AD:DP:GQ:PL 0/1:8,22:30:99:824,0,221 2 190332997 rs6434343 T A 352.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=0.00;SOR=4.804;VQSLOD=8.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:381,30,0 2 190430177 rs2304704 A G 1373.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.328;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=1.032;SB=-9.020e+02;SOR=0.701;VQSLOD=8.84;culprit=FS GT:AD:DP:GQ:PL 0/1:75,57:132:99:1402,0,1892 2 190443304 rs1439815 C T 879.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-1.543e+02;SOR=3.180;VQSLOD=7.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:69:908,69,0 2 190444630 rs1439816 C G 2710.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.46;SB=-1.453e+03;SOR=1.204;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2739,196,0 2 190445076 rs4287798 T G 1079.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-3.840e+02;SOR=1.885;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:81:1108,81,0 2 190448047 rs987028 T C 1831.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.03;SB=-7.910e+02;SOR=1.498;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1860,135,0 2 190448548 rs368151678 CATAT C 1583.73 PASS AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=34.94;SB=-1.120e+02;SOR=4.977;VQSLOD=4.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:37:99:1621,100,0 2 190531426 rs1437880 G A 2441.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=-1.489e+03;SOR=0.824;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2470,181,0 2 190570001 rs11319823 TA T 727.73 PASS AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.99;RPA=10,9;RU=A;SB=-8.251e+01;SOR=3.767;STR;VQSLOD=4.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:33:84:765,84,0 2 190593311 rs1225087 C G 2794.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.27;SB=-9.830e+02;SOR=1.939;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2823,205,0 2 190595258 rs1225090 G T 2156.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.96;SB=-1.213e+03;SOR=1.002;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2185,160,0 2 190602513 rs1225099 T C 2211.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=-1.373e+03;SOR=0.719;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2240,169,0 2 190611084 rs13002216 T C 1381.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SB=-5.370e+02;SOR=1.775;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1410,102,0 2 190611414 rs2254166 T C 762.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-2.031e+02;SOR=2.215;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:57:791,57,0 2 190611459 rs2254167 A G 384.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.06;SB=-3.577e+01;SOR=3.611;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:413,30,0 2 190617643 rs2243876 A G 2739.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.96;SB=-1.446e+03;SOR=1.067;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:2768,202,0 2 190636411 rs6942 C G 796.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.29;SB=0.00;SOR=6.091;VQSLOD=8.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:825,60,0 2 190640475 rs3816196 A G 2371.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-8.570e+02;SOR=2.133;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2400,175,0 2 190643257 rs7591929 G A 1309.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.73;SB=-7.430e+02;SOR=1.112;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:96:1338,96,0 2 190647108 rs10168387 T C 367.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-3.677e+01;SOR=3.611;VQSLOD=7.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:396,30,0 2 190788824 . G T 62.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=43.40;MQ0=0;MQRankSum=-3.683;QD=2.85;ReadPosRankSum=0.468;SB=-6.800e+01;SOR=0.791;VQSLOD=0.392;culprit=QD GT:AD:DP:GQ:PL 0/1:13,9:22:91:91,0,386 2 190788825 . A G 62.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.038;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=43.40;MQ0=0;MQRankSum=-3.683;QD=2.85;ReadPosRankSum=0.669;SB=-7.100e+01;SOR=0.791;VQSLOD=1.43;culprit=QD GT:AD:DP:GQ:PL 0/1:13,9:22:91:91,0,377 2 190788844 rs372940917 T TC 661.73 PASS AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=40.16;MQ0=0;QD=27.03;SB=-3.240e+02;SOR=0.693;VQSLOD=4.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:699,48,0 2 190788852 . T C 52.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.726;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=43.46;MQ0=0;MQRankSum=-3.448;QD=2.64;ReadPosRankSum=2.776;SB=-8.639e+00;SOR=1.022;VQSLOD=0.723;culprit=QD GT:AD:DP:GQ:PL 0/1:13,7:20:81:81,0,299 2 190788853 . G A 44.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=42.66;MQ0=0;MQRankSum=-3.419;QD=2.03;ReadPosRankSum=2.962;SB=-8.639e+00;SOR=0.784;VQSLOD=0.174;culprit=QD GT:AD:DP:GQ:PL 0/1:15,7:22:73:73,0,406 2 190926859 MSTN GT G 574.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;DB;DP=35;ExcessHet=3.0103;FS=2.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.42;RPA=3,2;RU=T;ReadPosRankSum=1.337;SB=-1.321e+01;SOR=1.347;STR;VQSLOD=6.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,18:35:99:612,0,534 2 191064753 rs6753459 C T 985.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.747;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.785;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-0.537;SB=-6.030e+02;SOR=0.547;VQSLOD=9.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,39:95:99:1014,0,1416 2 191109448 rs7582209 G A 220.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=1.299;SB=0.00;SOR=1.270;VQSLOD=8.50;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:95:249,0,95 2 191109533 rs11883568 C T 353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.724;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.120;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=0.597;SB=-1.940e+02;SOR=0.318;VQSLOD=9.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,15:33:99:382,0,499 2 191114229 rs2244076 T C 94.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.57;ReadPosRankSum=0.369;SB=-2.801e+01;SOR=0.382;VQSLOD=9.17;culprit=QD GT:AD:DP:GQ:PL 0/1:12,5:17:99:123,0,367 2 191114235 rs2244075 G A 89.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.59;ReadPosRankSum=1.307;SB=-4.800e+01;SOR=0.719;VQSLOD=8.40;culprit=QD GT:AD:DP:GQ:PL 0/1:19,6:25:99:118,0,463 2 191116355 rs3791792 A G 324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.224;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=0.109;SB=-1.120e+02;SOR=0.387;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:8,13:21:99:353,0,203 2 191116401 . G GT 79.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.699;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.97;RPA=10,11;RU=T;ReadPosRankSum=-0.135;SB=0.00;SOR=1.179;STR;VQSLOD=8.16;culprit=FS GT:AD:DP:GQ:PL 0/1:3,5:13:50:117,0,50 2 191159232 rs188339 A G 590.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.045;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.507;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=-2.519;SB=-3.370e+02;SOR=0.340;VQSLOD=9.59;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:28,23:51:99:619,0,786 2 191161622 rs1058180 T C 890.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=9.014;HaplotypeScore=3.4093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.466;SB=-4.070e+02;SOR=1.220;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 0/1:29,33:62:99:919,0,739 2 191175639 rs36074132 GT G 1517.73 PASS AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.73;RPA=4,3;RU=T;SB=-4.800e+02;SOR=1.714;STR;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:46:99:1555,135,0 2 191184475 rs291466 A G 1538.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.148;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=-0.630;SB=-7.450e+02;SOR=0.749;VQSLOD=8.47;culprit=FS GT:AD:DP:GQ:PL 0/1:52,56:108:99:1567,0,1306 2 191184524 rs3749022 C T 2378.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-1.133e+03;SOR=1.387;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2407,175,0 2 191208795 rs760307 C T 170.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=3.949;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.12;ReadPosRankSum=0.985;SB=-1.140e+02;SOR=0.552;VQSLOD=5.13;culprit=QD GT:AD:DP:GQ:PL 0/1:15,9:24:99:199,0,435 2 191224981 rs4656 G T 719.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.916;HaplotypeScore=4.5630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=-0.746;SB=-3.690e+02;SOR=0.830;VQSLOD=7.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,28:69:99:748,0,1094 2 191225197 rs2067405 A G 377.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.019;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=0.463;SB=-1.766e+00;SOR=1.863;VQSLOD=7.95;culprit=FS GT:AD:DP:GQ:PL 0/1:12,13:25:99:406,0,356 2 191227235 rs2067421 T G 30.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.80;ReadPosRankSum=0.301;SB=-3.001e+01;SOR=0.132;VQSLOD=7.46;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:59:59,0,256 2 191231458 rs11544940 G A 1014.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.306;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=6.866;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=-0.604;SB=-2.900e+02;SOR=1.467;VQSLOD=5.55;culprit=FS GT:AD:DP:GQ:PL 0/1:68,41:109:99:1043,0,1814 2 191231503 rs10931450 G A 1258.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.174;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.673;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=-1.869;SB=-7.580e+02;SOR=0.826;VQSLOD=7.29;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:72,54:126:99:1287,0,1776 2 191235901 rs1882891 A C 3466.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.866;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8319;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.23;ReadPosRankSum=0.047;SB=-1.999e+03;SOR=0.223;VQSLOD=8.07;culprit=FS GT:AD:DP:GQ:PL 1/1:1,110:111:99:3495,262,0 2 191301368 rs9646748 A G 3073.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=-1.539e+03;SOR=1.085;VQSLOD=7.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:3102,226,0 2 191334424 rs10193212 G A 479.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-3.677e+01;SOR=4.047;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:508,39,0 2 191334459 rs67859388 A ATTTTTAT 1715.73 PASS AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.91;RPA=2,3;RU=TTTTTAT;SB=-1.760e+02;SOR=3.716;STR;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:22:60:1753,60,0 2 191354658 rs66462803 C CCT 2351.73 PASS AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-8.220e+02;SOR=1.402;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:43:99:2389,126,0 2 191364309 rs7594994 C T 362.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-7.497e+01;SOR=2.670;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:391,30,0 2 191365043 rs61742316 A G 374.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.59;SB=0.00;SOR=4.804;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:403,30,0 2 191373775 rs6707244 C T 3089.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.19;SB=-9.250e+02;SOR=2.254;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:97:99:3118,232,0 2 191374043 rs13429315 C T 2833.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.84;SB=-4.990e+02;SOR=3.284;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2862,226,0 2 191375375 rs6712426 G A 568.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.30;SB=-2.977e+01;SOR=4.174;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:45:597,45,0 2 191383924 rs13395233 C G 1133.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-2.860e+02;SOR=2.448;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:84:1162,84,0 2 191389853 rs74975456 T C 1874.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-9.460e+02;SOR=1.107;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1903,141,0 2 191390126 rs10931458 G A 1608.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-4.840e+02;SOR=2.215;VQSLOD=7.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1637,126,0 2 191399378 rs13412879 C G 437.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.75;SB=-2.960e+02;SOR=0.804;VQSLOD=4.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:33:466,33,0 2 191399433 rs12693579 T C 366.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.20;SB=-1.603e+02;SOR=1.765;VQSLOD=4.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:30:395,30,0 2 191523862 . C CT 129.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.303;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.71;RPA=16,17;RU=T;ReadPosRankSum=-1.334;SB=-8.000e+01;SOR=0.622;STR;VQSLOD=7.13;culprit=QD GT:AD:DP:GQ:PL 0/1:25,10:40:99:167,0,494 2 191545606 rs13382951 C A 168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=0.469;SB=0.00;SOR=1.022;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:197,0,161 2 191552148 rs6716415 C T 592.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.661;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=18.3413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=-0.566;SB=-1.135e+02;SOR=0.813;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:30,23:55:99:621,0,833 2 191765206 rs3771313 T C 360.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.60;SB=0.00;SOR=4.804;VQSLOD=7.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:389,30,0 2 191818065 rs6434430 T C 543.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.64;SB=0.00;SOR=5.421;VQSLOD=8.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:572,42,0 2 191818243 rs72239530 ATG A 1633.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQ0=0;MQRankSum=1.876;POSITIVE_TRAIN_SITE;QD=13.96;RPA=2,1;RU=TG;ReadPosRankSum=-0.933;SB=-7.240e+02;SOR=0.722;STR;VQSLOD=1.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:74,43:118:99:1671,0,3449 2 191839464 rs2066793 G A 51.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.781;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.98;ReadPosRankSum=-0.339;SB=0.00;SOR=0.124;VQSLOD=8.50;culprit=QD GT:AD:DP:GQ:PL 0/1:10,3:13:80:80,0,326 2 191848312 rs12477076 T C 1004.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.49;SB=-2.161e+02;SOR=2.621;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:75:1033,75,0 2 191873553 rs10199181 A T 176.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.68;ReadPosRankSum=0.816;SB=0.00;SOR=1.085;VQSLOD=10.30;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:205,0,128 2 191875035 rs36077929 C T 1047.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.923;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-0.413;SB=-6.150e+02;SOR=0.748;VQSLOD=8.24;culprit=FS GT:AD:DP:GQ:PL 0/1:48,43:91:99:1076,0,1165 2 191922307 rs56816363 CT C 178.90 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;RPA=14,13;RU=T;ReadPosRankSum=1.285;SB=-5.297e+01;SOR=0.804;STR;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:2,11:17:14:216,0,14 2 191922841 rs3024866 G A 496.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.881;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.796;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=1.096;SB=-2.650e+02;SOR=0.307;VQSLOD=10.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,20:39:99:525,0,532 2 191931464 rs1517352 A C 364.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.05;ReadPosRankSum=0.000;SB=0.00;SOR=2.303;VQSLOD=7.94;culprit=FS GT:AD:DP:GQ:PL 0/1:3,11:15:71:393,0,71 2 191996518 rs1551443 T C 1429.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.760;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=1.563;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=-0.055;SB=-5.950e+02;SOR=0.935;VQSLOD=8.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,56:112:99:1458,0,1523 2 192161058 . G GT 1503.73 PASS AC=2;AF=1.00;AN=2;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.04;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.92;RPA=8,9;RU=T;SB=-3.450e+02;SOR=2.584;STR;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:62:99:1541,156,0 2 192214833 rs67146186 A T 1420.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-4.600e+02;SOR=2.007;VQSLOD=4.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1449,105,0 2 192214966 rs59642822 T C 1326.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.36;SB=-4.480e+02;SOR=2.038;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1355,99,0 2 192225294 rs2138913 A G 1565.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-4.760e+02;SOR=2.078;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1594,114,0 2 192225477 rs112846753 G T 466.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.183;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.9981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-0.808;SB=-9.500e+01;SOR=0.446;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:22,17:39:99:495,0,665 2 192226908 rs2271769 G C 950.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-4.276e+01;SOR=5.058;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:75:979,75,0 2 192227230 rs12988758 T C 996.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.86;SB=-1.115e+02;SOR=3.767;VQSLOD=3.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:75:1025,75,0 2 192247808 rs34460997 A G 673.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;SB=0.00;SOR=5.784;VQSLOD=8.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:702,51,0 2 192247836 rs4641883 C T 838.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-1.493e+02;SOR=3.014;VQSLOD=5.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:867,69,0 2 192250543 rs13000398 A G 1217.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.70;SB=-1.225e+02;SOR=4.112;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:90:1246,90,0 2 192250568 rs13026888 T C 1570.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.42;SB=-2.840e+02;SOR=3.306;VQSLOD=7.59;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,47:47:99:1599,117,0 2 192250726 rs13018796 G A 3349.77 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=-1.936e+03;SOR=0.965;VQSLOD=7.33;culprit=DP GT:AD:DP:GQ:PL 1/1:0,114:114:99:3378,247,0 2 192279327 rs2271767 T C 3979.77 PASS AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-2.426e+03;SOR=0.892;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,130:130:99:4008,286,0 2 192701393 rs10167187 A G 1689.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-6.130e+02;SOR=1.739;VQSLOD=7.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1718,126,0 2 192701407 rs61735649 G C 1482.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;SB=-6.540e+02;SOR=1.464;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:47:99:1511,108,0 2 192701453 rs114763644 C T 517.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.655;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=7.425;HaplotypeScore=2.5540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=0.835;SB=-2.710e+02;SOR=0.149;VQSLOD=7.80;culprit=FS GT:AD:DP:GQ:PL 0/1:21,20:41:99:546,0,565 2 192701617 rs4461209 A C 734.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-4.120e+02;SOR=1.051;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:54:763,54,0 2 192711162 rs4471838 A C 4612.77 PASS AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.26;SB=-2.046e+03;SOR=1.435;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,143:143:99:4641,337,0 2 192746182 rs12693617 G A 1029.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.90;SB=-4.260e+02;SOR=1.255;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:81:1058,81,0 2 192746735 rs4416162 T C 1336.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.71;SB=-8.070e+02;SOR=1.136;VQSLOD=5.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1365,102,0 2 192820898 rs7606017 T G 1188.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.02;SB=-1.145e+02;SOR=4.294;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:99:1217,99,0 2 193056737 rs3768702 C A 794.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.634;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=3.619;HaplotypeScore=3.7567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=1.564;SB=-1.900e+02;SOR=1.179;VQSLOD=7.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,34:68:99:823,0,884 2 194141771 rs2118886 G A 377.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.18;SB=-1.503e+02;SOR=1.473;VQSLOD=4.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:30:406,30,0 2 195052314 rs9808251 T C 292.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.28;SB=-1.871e+02;SOR=0.693;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:321,24,0 2 195052367 rs9808060 C A 292.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.28;SB=-1.603e+02;SOR=1.085;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:321,24,0 2 196581295 rs148345473 T TGTCTAG 1275.73 PASS AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.81;SB=-9.576e+01;SOR=3.912;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:1313,42,0 2 196582816 rs842736 T C 605.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.65;SB=-3.677e+01;SOR=4.407;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:634,51,0 2 196602582 rs71015726 A AAAT 1941.73 PASS AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.72;RPA=1,2;RU=AAT;SB=-3.081e+02;SOR=3.383;STR;VQSLOD=4.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:99:1979,108,0 2 196619340 rs1866451 T G 578.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=0.00;SOR=5.549;VQSLOD=8.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:607,45,0 2 196636662 rs1145939 C G 1196.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=-2.511e+02;SOR=2.899;VQSLOD=5.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:90:1225,90,0 2 196663997 rs7567285 T C 1949.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-6.550e+02;SOR=2.194;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1978,147,0 2 196673533 rs13411834 A G 4160.77 PASS AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-2.643e+03;SOR=0.829;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,139:139:99:4189,301,0 2 196681284 rs2280452 A T 324.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.52;SB=0.00;SOR=4.977;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:353,30,0 2 196682630 rs975417 C A 895.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.22;SB=0.00;SOR=6.518;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:75:924,75,0 2 196749503 rs371128668 C T 359.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.906;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-1.047;SB=-3.300e+01;SOR=0.460;VQSLOD=8.50;culprit=FS GT:AD:DP:GQ:PL 0/1:17,13:30:99:388,0,513 2 196756535 rs11292337 GA G 1087.73 PASS AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.30;RPA=11,10;RU=A;SB=-1.870e+02;SOR=3.109;STR;VQSLOD=4.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:47:99:1125,129,0 2 196791276 rs1489802 T G 1567.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;SB=-7.250e+02;SOR=1.524;VQSLOD=7.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1596,117,0 2 196851911 rs10931715 G A 1049.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.16;SB=-5.770e+02;SOR=1.061;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:78:1078,78,0 2 196866420 rs6434811 C T 2909.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4892;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=-1.186e+03;SOR=1.760;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:2938,211,0 2 196891449 rs1072600 T C 1245.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.44;SB=-4.376e+01;SOR=5.610;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:96:1274,96,0 2 196892695 rs62203391 T C 1605.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.691;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.683;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-0.435;SB=-9.500e+02;SOR=0.792;VQSLOD=7.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,65:120:99:1634,0,1465 2 196912067 rs4850381 A G 1311.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.91;SB=-6.320e+02;SOR=1.251;VQSLOD=5.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:96:1340,96,0 2 196915991 rs10174065 A G 1422.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.632;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5224;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.36;ReadPosRankSum=1.467;SB=-7.030e+02;SOR=0.588;VQSLOD=8.31;culprit=FS GT:AD:DP:GQ:PL 1/1:1,51:52:71:1451,71,0 2 196933188 rs13028754 T C 669.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;SB=-1.613e+02;SOR=2.636;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:51:698,51,0 2 196935811 rs12693777 T C 1499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-6.530e+02;SOR=1.473;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1528,111,0 2 197004439 rs1054537 A G 867.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-5.300e+02;SOR=0.906;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:63:896,63,0 2 197008529 rs1568368 C T 349.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.98;SB=0.00;SOR=4.804;VQSLOD=7.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:378,30,0 2 197010823 rs2271888 C T 851.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.48;SB=-4.410e+02;SOR=1.402;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:63:880,63,0 2 197021141 rs6712829 G A 444.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=-7.397e+01;SOR=2.985;VQSLOD=7.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:36:473,36,0 2 197021276 rs10931726 T C 2051.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.11;SB=-1.290e+03;SOR=0.898;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2080,150,0 2 197021372 rs12478353 T A 1735.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.42;SB=-7.260e+02;SOR=1.532;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1764,135,0 2 197065889 rs3795921 A G 400.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=-3.777e+01;SOR=3.767;VQSLOD=8.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:429,36,0 2 197065964 rs3820908 C A 1116.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.24;SB=-5.270e+02;SOR=1.501;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:81:1145,81,0 2 197084595 rs1531114 T C 368.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.66;SB=-1.205e+02;SOR=1.609;VQSLOD=5.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:397,30,0 2 197087162 . A C 339.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.014;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.99;ReadPosRankSum=0.116;SB=0.00;SOR=1.127;VQSLOD=8.67;culprit=FS GT:AD:DP:GQ:PL 0/1:8,12:20:99:368,0,257 2 197092767 rs3748873 A G 336.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.371;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=0.116;SB=-1.050e+02;SOR=0.914;VQSLOD=10.26;culprit=FS GT:AD:DP:GQ:PL 0/1:11,13:24:99:365,0,291 2 197093005 rs3748874 A C 513.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.173;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=3.330;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=-0.857;SB=-2.580e+02;SOR=0.223;VQSLOD=10.34;culprit=SOR GT:AD:DP:GQ:PL 0/1:18,22:40:99:542,0,530 2 197105022 . T TA 79.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=1.420;QD=4.98;RPA=12,13;RU=A;ReadPosRankSum=0.760;SB=0.00;SOR=0.340;STR;VQSLOD=1.63;culprit=QD GT:AD:DP:GQ:PL 0/1:10,6:16:99:117,0,168 2 197106759 rs2045277 T C 442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.271;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-2.272;SB=-2.610e+02;SOR=0.990;VQSLOD=7.27;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:17,20:37:99:471,0,492 2 197118729 rs4850690 C T 1944.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.87;SB=-8.460e+02;SOR=1.467;VQSLOD=7.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1973,147,0 2 197122662 rs77751899 T C 695.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.510;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=-0.052;SB=-6.800e+01;SOR=0.569;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:12,23:35:99:724,0,318 2 197138653 rs72923327 G A 748.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.335;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=0.307;SB=-2.870e+02;SOR=0.699;VQSLOD=7.98;culprit=FS GT:AD:DP:GQ:PL 0/1:44,31:75:99:777,0,1224 2 197138654 rs72923330 C A 750.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.822;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=0.221;SB=-2.880e+02;SOR=0.699;VQSLOD=8.11;culprit=FS GT:AD:DP:GQ:PL 0/1:44,31:75:99:779,0,1211 2 197143469 rs79695855 C A 2363.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.83;SB=-5.660e+02;SOR=2.649;VQSLOD=5.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2392,178,0 2 197171175 rs4241189 C T 1977.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.86;SB=-8.610e+02;SOR=1.745;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:72:99:2006,150,0 2 197172538 rs2305566 G A 910.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=-2.970e+02;SOR=2.093;VQSLOD=5.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:69:939,69,0 2 197172816 rs2305567 G A 1312.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.17;SB=-5.120e+02;SOR=1.714;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:96:1341,96,0 2 197184321 rs1531111 C T 6323.77 PASS AC=2;AF=1.00;AN=2;DB;DP=200;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5975;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.78;SB=-3.618e+03;SOR=0.831;VQSLOD=6.12;culprit=DP GT:AD:DP:GQ:PL 1/1:0,199:200:99:6352,464,0 2 197298222 rs2204641 T C 1097.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.29;SB=-5.690e+02;SOR=1.085;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:81:1126,81,0 2 197298232 rs2204640 C T 998.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=-5.190e+02;SOR=1.244;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:78:1027,78,0 2 197504545 rs1879128 C G 1176.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.70;SB=-5.630e+02;SOR=1.347;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:87:1205,87,0 2 197504826 rs6434873 A G 806.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;SB=-2.041e+02;SOR=2.400;VQSLOD=7.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:63:835,63,0 2 197534692 rs7590083 C T 1803.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.18;SB=-8.090e+02;SOR=1.503;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:65:99:1832,132,0 2 197584504 rs2680970 C T 579.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.21;SB=-1.155e+02;SOR=2.833;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:48:608,48,0 2 197593787 rs2460436 C T 401.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.22;SB=0.00;SOR=4.977;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:430,33,0 2 197594203 rs2577580 G C 2952.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.44;SB=-1.701e+03;SOR=0.892;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:2981,217,0 2 197595762 rs2680967 G A 739.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-3.150e+02;SOR=1.519;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:57:768,57,0 2 197664521 rs6434886 A T 751.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.04;SB=0.00;SOR=6.184;VQSLOD=8.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:780,63,0 2 197777589 rs12693800 C T 2911.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.26;SB=-7.320e+02;SOR=2.387;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2940,220,0 2 197792152 . A C 408.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7845;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=1.701;QD=19.47;ReadPosRankSum=-0.909;SB=0.00;SOR=2.200;VQSLOD=0.051;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,16:21:99:437,0,107 2 197854233 rs71768472 T TAC 1625.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.923;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.02;MQ0=0;MQRankSum=0.530;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.04;RPA=7,8;RU=AC;ReadPosRankSum=0.969;SB=-9.497e+01;SOR=2.935;STR;VQSLOD=0.707;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,39:42:60:1663,60,0 2 197863214 rs1966703 C T 2788.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.33;SB=-6.950e+02;SOR=2.732;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2817,220,0 2 197863851 rs4850742 C T 897.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.96;SB=-2.201e+02;SOR=2.546;VQSLOD=7.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:926,72,0 2 197864996 rs6434897 A C 780.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.72;SB=-4.376e+01;SOR=4.712;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:809,60,0 2 197866470 rs12478175 T A 1615.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-8.790e+02;SOR=1.036;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1644,120,0 2 197872727 rs35995095 T TTCTC 1516.73 PASS AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;RPA=2,4;RU=TC;SB=-2.055e+02;SOR=3.352;STR;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:25:69:1554,69,0 2 197873563 rs7565685 T C 425.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SB=-4.076e+01;SOR=3.767;VQSLOD=7.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:454,36,0 2 197953372 rs146161383 TAAGTC T 3306.73 PASS AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.23;RPA=2,1;RU=AAGTC;SB=-7.010e+02;SOR=2.636;STR;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:47:99:3344,132,0 2 197954780 rs4300850 A G 1548.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.66;SB=-9.970e+02;SOR=1.009;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1577,111,0 2 197986048 rs2697270 T C 809.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-1.841e+02;SOR=2.584;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:838,60,0 2 197989945 rs2579395 T C 845.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-1.701e+02;SOR=2.670;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:63:874,63,0 2 197990509 rs2579394 G A 1726.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-5.920e+02;SOR=1.938;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1755,135,0 2 197990909 rs2918628 G A 981.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.20;SB=-4.076e+01;SOR=5.211;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:78:1010,78,0 2 198001443 rs2579387 C T 660.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-1.453e+02;SOR=2.636;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:51:689,51,0 2 198011904 rs2249470 G A 1498.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.82;SB=-5.790e+02;SOR=1.893;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1527,111,0 2 198257795 rs4685 T C 2054.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.40;SB=-1.224e+03;SOR=1.164;VQSLOD=6.86;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,75:75:99:2083,147,0 2 198265173 rs788017 T A 840.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.65;SB=-3.976e+01;SOR=4.892;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:66:869,66,0 2 198265526 rs788018 A G 1100.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-4.100e+02;SOR=1.949;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:37:81:1129,81,0 2 198266943 rs788019 C T 661.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SB=-8.097e+01;SOR=3.716;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:690,54,0 2 198267770 . G GAA 1630.73 PASS AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;RPA=4,6;RU=A;SB=-6.440e+02;SOR=1.236;STR;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:42:99:1668,117,0 2 198283305 rs788023 T C 2619.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.75;SB=-1.517e+03;SOR=0.850;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2648,190,0 2 198355135 rs35039119 T TTG 239.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;RPA=2,3;RU=TG;ReadPosRankSum=-0.621;SB=-1.250e+02;SOR=0.368;STR;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:11,8:20:99:277,0,405 2 198362018 rs8539 T C 604.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.160;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=6.647;HaplotypeScore=2.7041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.772;SB=-3.360e+02;SOR=0.365;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 0/1:19,21:40:99:633,0,536 2 198380635 rs75909202 C T 128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-1.016;SB=-1.765e+00;SOR=1.911;VQSLOD=8.00;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:157,0,171 2 198508951 rs10497806 G A 1813.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;DB;DP=184;Dels=0.00;ExcessHet=3.0103;FS=4.345;HaplotypeScore=2.8069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=-0.598;SB=-1.231e+03;SOR=0.541;VQSLOD=6.78;culprit=DP GT:AD:DP:GQ:PL 0/1:103,81:184:99:1842,0,2553 2 198511086 rs16866970 G A 901.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.001;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=1.000;HaplotypeScore=1.8936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-1.075;SB=-2.520e+02;SOR=0.842;VQSLOD=7.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,32:71:99:930,0,1140 2 198572076 rs371088030 A ATTC 1273.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.576;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.59;RPA=1,2;RU=TTC;ReadPosRankSum=0.841;SB=-5.430e+02;SOR=0.732;STR;VQSLOD=8.86;culprit=FS GT:AD:DP:GQ:PL 0/1:35,24:63:99:1311,0,1925 2 198643631 rs700655 G A 791.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.131;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=5.069;HaplotypeScore=1.9467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-1.047;SB=-4.640e+02;SOR=0.250;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:37,31:68:99:820,0,946 2 198643651 rs72918816 A G 885.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.485;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=6.055;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=-0.423;SB=-5.850e+02;SOR=0.269;VQSLOD=8.72;culprit=FS GT:AD:DP:GQ:PL 0/1:43,36:79:99:914,0,1176 2 198866620 rs72928581 G A 124.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=0.414;SB=-9.500e+01;SOR=0.941;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:153,0,113 2 198950240 rs1064213 G A 3943.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.571;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.65;ReadPosRankSum=0.730;SB=-2.234e+03;SOR=0.908;VQSLOD=5.49;culprit=FS GT:AD:DP:GQ:PL 1/1:2,131:133:99:3972,262,0 2 200173684 rs10153730 T G 3613.77 PASS AC=2;AF=1.00;AN=2;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;SB=-1.570e+03;SOR=1.512;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,119:119:99:3642,259,0 2 200245245 rs1348813 C G 1310.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-4.580e+02;SOR=2.147;VQSLOD=7.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:96:1339,96,0 2 200298313 rs7596597 A G 830.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.52;SB=-7.497e+01;SOR=4.003;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:63:859,63,0 2 200323452 rs114693875 A G 460.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=0.661;SB=-1.760e+02;SOR=0.542;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:13,18:31:99:489,0,370 2 200524744 rs72920213 G A 587.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.848;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=5.765;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.481;SB=-3.320e+02;SOR=0.245;VQSLOD=8.78;culprit=FS GT:AD:DP:GQ:PL 0/1:27,24:51:99:616,0,838 2 200525076 rs77443884 A G 327.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-0.500;SB=-2.150e+02;SOR=0.498;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:10,15:25:99:356,0,268 2 200677625 rs2030653 C T 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=1.169;SB=0.00;SOR=0.551;VQSLOD=10.14;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:166,0,214 2 200710706 rs769960 T G 106.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=-0.361;SB=-1.765e+00;SOR=1.112;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:7,4:11:99:135,0,211 2 200820505 rs281766 T G 219.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.957;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=0.424;SB=-3.976e+01;SOR=0.368;VQSLOD=10.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,8:13:99:248,0,150 2 200872942 rs6414157 C T 547.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.406;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=4.715;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=-2.476;SB=-2.801e+01;SOR=1.911;VQSLOD=5.58;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:17,18:35:99:576,0,479 2 200873144 rs113489455 AATACAAAAAAAACTTG A 3278.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;DB;DP=54;ExcessHet=3.0103;FS=1.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=0.798;SB=-7.340e+02;SOR=1.061;VQSLOD=7.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,18:54:99:3316,0,6136 2 201170989 . C T 747.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.797;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.020;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.67;ReadPosRankSum=0.418;SB=-2.940e+02;SOR=0.850;VQSLOD=6.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,31:59:99:776,0,751 2 201171014 rs3739121 G C 853.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=1.322;SB=-4.080e+02;SOR=0.599;VQSLOD=9.16;culprit=FS GT:AD:DP:GQ:PL 0/1:33,36:69:99:882,0,858 2 201171191 rs10931898 C G 1288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.643;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=1.498;HaplotypeScore=1.5983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=0.192;SB=-7.140e+02;SOR=1.036;VQSLOD=7.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,56:120:99:1317,0,1702 2 201171207 rs12614621 G C 1339.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.419;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=3.422;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=0.507;SB=-6.730e+02;SOR=1.037;VQSLOD=7.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,53:117:99:1368,0,1610 2 201171355 rs12618057 T C 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.697;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.6316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-0.207;SB=-1.765e+00;SOR=1.609;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:15:99:201,0,145 2 201173620 rs3769481 A G 285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.188;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=-0.323;SB=-2.901e+01;SOR=1.375;VQSLOD=8.58;culprit=FS GT:AD:DP:GQ:PL 0/1:19,11:30:99:314,0,482 2 201194279 rs3739119 C A 278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.507;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.262;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-1.509;SB=-9.701e+01;SOR=0.188;VQSLOD=9.73;culprit=SOR GT:AD:DP:GQ:PL 0/1:11,12:23:99:307,0,311 2 201253956 rs842823 A G 895.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.137;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=7.336;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.438;SB=-2.650e+02;SOR=1.651;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 0/1:30,34:64:99:924,0,756 2 201254049 rs3820881 G C 2502.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.77;SB=-1.638e+03;SOR=0.812;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2531,187,0 2 201254171 rs4674015 A G 1214.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.86;SB=-1.115e+02;SOR=4.174;VQSLOD=4.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:93:1243,93,0 2 201277181 rs6706953 T C 2217.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-9.350e+02;SOR=1.545;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2246,160,0 2 201280996 rs5837739 CA C 82.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.89;RPA=17,16;RU=A;ReadPosRankSum=-0.794;SB=-2.407e+01;SOR=1.426;STR;VQSLOD=8.46;culprit=QD GT:AD:DP:GQ:PL 0/1:3,9:13:47:120,0,47 2 201334852 rs17532294 A G 543.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.347;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=0.673;SB=-7.301e+01;SOR=0.407;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:16,18:34:99:572,0,509 2 201342238 . TAAAAAA T 546.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.24;MQ0=0;MQRankSum=1.049;POSITIVE_TRAIN_SITE;QD=13.02;RPA=23,17;RU=A;ReadPosRankSum=0.141;SB=-6.700e+01;SOR=1.179;STR;VQSLOD=3.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,10:22:99:584,0,532 2 201354935 rs3795969 C G 896.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.048;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.911;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-0.931;SB=-4.890e+02;SOR=1.061;VQSLOD=7.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,36:76:99:925,0,1056 2 201371768 rs3739116 G T 1602.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=5.413;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=-0.916;SB=-8.610e+02;SOR=0.997;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 0/1:63,62:125:99:1631,0,1590 2 201397569 rs842940 G A 823.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.70;SB=0.00;SOR=6.358;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:852,69,0 2 201397647 rs842939 A C 2625.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.18;SB=-1.016e+03;SOR=1.749;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2654,190,0 2 201437328 rs35987478 C A 716.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.203;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.188;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.07;ReadPosRankSum=-0.892;SB=-2.990e+02;SOR=1.113;VQSLOD=6.67;culprit=QD GT:AD:DP:GQ:PL 0/1:51,28:79:99:745,0,1447 2 201437334 rs12052989 T C 806.77 PASS 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1447.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.789;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.726;HaplotypeScore=2.8313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=1.165;SB=-7.320e+02;SOR=0.584;VQSLOD=9.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,58:110:99:1476,0,1453 2 201677454 rs2270281 C T 521.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.39;ReadPosRankSum=-1.145;SB=-7.100e+01;SOR=0.638;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:12,18:30:99:550,0,382 2 201677791 rs2270280 T C 623.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.034;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.172;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=1.703;SB=-3.460e+02;SOR=0.748;VQSLOD=6.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,22:44:99:652,0,534 2 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T TA 250.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.40;RPA=15,16;RU=A;ReadPosRankSum=0.776;SB=-7.027e+01;SOR=0.622;STR;VQSLOD=8.46;culprit=FS GT:AD:DP:GQ:PL 0/1:7,15:30:95:288,0,95 2 201800610 . T G 1361.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;DP=96;Dels=0.00;ExcessHet=3.0103;FS=2.722;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.19;ReadPosRankSum=-1.146;SB=-6.740e+02;SOR=0.463;VQSLOD=8.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,53:96:99:1390,0,1123 2 201857136 rs16836492 C T 879.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.950;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=8.259;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-0.888;SB=-1.890e+02;SOR=2.104;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 0/1:29,31:60:99:908,0,648 2 202025131 rs2518142 G A 4229.77 PASS AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.80;SB=-1.540e+03;SOR=1.719;VQSLOD=6.77;culprit=DP GT:AD:DP:GQ:PL 1/1:0,133:133:99:4258,322,0 2 202131587 rs2293554 T G 562.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.479;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=5.444;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.84;ReadPosRankSum=1.727;SB=-1.653e+02;SOR=0.119;VQSLOD=8.64;culprit=FS GT:AD:DP:GQ:PL 0/1:8,19:27:99:591,0,237 2 202134144 rs13401994 G T 329.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.633;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=0.927;SB=0.00;SOR=0.560;VQSLOD=10.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,12:26:99:358,0,458 2 202136547 rs34225877 CAG C 355.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.64;RPA=2,1;RU=AG;ReadPosRankSum=0.817;SB=0.00;SOR=1.445;STR;VQSLOD=8.63;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:99:393,0,171 2 202142425 . AT A 136.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;DP=24;ExcessHet=3.0103;FS=5.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.51;RPA=16,15;RU=T;ReadPosRankSum=1.516;SB=-1.417e+01;SOR=2.147;STR;VQSLOD=5.33;culprit=QD GT:AD:DP:GQ:PL 0/1:10,11:24:99:174,0,172 2 202149391 . CGGG C 489.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.091;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.81;MQ0=0;MQRankSum=1.865;QD=27.21;RPA=4,1;RU=G;ReadPosRankSum=0.298;SB=-5.900e+01;SOR=1.244;STR;VQSLOD=2.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,11:18:99:527,0,379 2 202151163 rs3769818 A G 894.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.263;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-0.840;SB=-4.720e+02;SOR=0.775;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 0/1:37,34:71:99:923,0,958 2 202151746 rs17860433 A G 421.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.722;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.79;ReadPosRankSum=-0.776;SB=-1.580e+02;SOR=0.776;VQSLOD=9.58;culprit=QD GT:AD:DP:GQ:PL 0/1:31,17:48:99:450,0,829 2 202154397 rs6715284 C G 1839.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.570;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=1.739;SB=-8.030e+02;SOR=0.607;VQSLOD=7.93;culprit=FS GT:AD:DP:GQ:PL 0/1:64,69:133:99:1868,0,1778 2 202195030 rs1406121 T C 230.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.359;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=2.050;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=-0.962;SB=-2.402e+01;SOR=1.483;VQSLOD=6.48;culprit=QD GT:AD:DP:GQ:PL 0/1:17,8:25:99:259,0,465 2 202211443 rs1406122 C T 724.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.453;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.143;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=1.356;SB=-2.640e+02;SOR=1.022;VQSLOD=7.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,28:66:99:753,0,1002 2 202213061 rs3731711 C G 535.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=2.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=-0.905;SB=-3.000e+01;SOR=1.828;VQSLOD=6.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,16:32:99:564,0,458 2 202215492 rs13014235 C G 610.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.76;SB=-3.700e+02;SOR=1.085;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:45:639,45,0 2 202215819 rs3817579 T C 381.89 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.982;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.82;ReadPosRankSum=0.875;SB=0.00;SOR=3.611;VQSLOD=5.15;culprit=FS GT:AD:DP:GQ:PL 0/1:1,11:12:2:408,0,2 2 202245244 rs3795966 A G 2107.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.94;SB=-1.063e+03;SOR=1.196;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2136,154,0 2 202245944 rs3832088 TAA T 1830.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.343;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.90;RPA=17,15;RU=A;ReadPosRankSum=-0.064;SB=-7.197e+01;SOR=4.332;STR;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:1,53:78:99:1868,158,0 2 202245953 . A G 203.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.392;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;QD=3.04;ReadPosRankSum=-5.259;SB=-2.601e+01;SOR=0.105;VQSLOD=0.835;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:55,12:67:99:232,0,1837 2 202245955 . A G 1765.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.902;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.644;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.17;ReadPosRankSum=4.735;SB=-2.901e+01;SOR=2.426;VQSLOD=1.46;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:11,54:65:99:1794,0,181 2 202246034 rs3731709 G C 477.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=0.00;SOR=5.549;VQSLOD=8.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:506,42,0 2 202248788 rs7579617 T C 2365.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.29;SB=-6.000e+02;SOR=2.551;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2394,175,0 2 202248979 rs7579853 T A 2004.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-7.460e+02;SOR=1.839;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2033,156,0 2 202257930 rs3815515 C A 766.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.69;SB=-4.076e+01;SOR=4.712;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:795,60,0 2 202260049 rs2256584 G A 2507.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.16;SB=-1.395e+03;SOR=1.005;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2536,190,0 2 202264156 rs13022344 C T 4721.77 PASS AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.27;SB=-3.039e+03;SOR=0.729;VQSLOD=5.79;culprit=DP GT:AD:DP:GQ:PL 1/1:0,167:167:99:4750,349,0 2 202264316 rs6732993 C T 1247.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=-7.597e+01;SOR=4.863;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:99:1276,99,0 2 202271991 rs11691859 T C 476.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.05;SB=0.00;SOR=5.421;VQSLOD=9.28;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,14:14:39:505,39,0 2 202272032 rs11691865 T A 1165.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.99;SB=-7.797e+01;SOR=4.743;VQSLOD=3.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:90:1194,90,0 2 202275309 rs143543299 A G 834.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.648;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-0.455;SB=-5.640e+02;SOR=0.681;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:25,36:61:99:863,0,611 2 202284236 rs138358635 C CTTAAT 5610.73 PASS AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.53;SB=-2.253e+03;SOR=1.103;VQSLOD=5.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:5648,220,0 2 202285100 rs4507084 A G 2779.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=-8.710e+02;SOR=2.223;VQSLOD=8.00;culprit=DP GT:AD:DP:GQ:PL 1/1:0,87:87:99:2808,202,0 2 202337730 rs1019299 A G 925.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.45;SB=-6.180e+02;SOR=0.869;VQSLOD=4.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:69:954,69,0 2 202342402 rs12990557 G T 4935.77 PASS AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-1.467e+03;SOR=2.224;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,149:149:99:4964,370,0 2 202342737 rs10460403 A G 689.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.85;SB=-3.570e+02;SOR=0.793;VQSLOD=4.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:718,57,0 2 202344179 rs34469362 GT G 424.74 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.891;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.35;RPA=10,9;RU=T;ReadPosRankSum=0.183;SB=-1.381e+02;SOR=0.859;STR;VQSLOD=8.33;culprit=FS GT:AD:DP:GQ:PL 1/1:1,18:19:28:462,28,0 2 202357196 rs184129762 A G 742.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.398;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.557;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.47;ReadPosRankSum=-0.117;SB=-4.850e+02;SOR=0.368;VQSLOD=8.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,30:48:99:771,0,498 2 202357949 rs2714482 A C 894.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.96;SB=-3.250e+02;SOR=1.863;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:69:923,69,0 2 202402250 rs3083390 AAC A 515.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.168;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQ0=0;MQRankSum=0.693;POSITIVE_TRAIN_SITE;QD=30.34;RPA=2,1;RU=AC;ReadPosRankSum=-1.305;SB=-2.040e+02;SOR=0.446;STR;VQSLOD=3.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,13:18:99:553,0,153 2 202468136 rs10205247 T A 99.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.308;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.67;ReadPosRankSum=0.594;SB=-1.765e+00;SOR=0.804;VQSLOD=9.12;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:99:128,0,250 2 202469361 rs12474206 C T 1517.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.60;SB=-8.630e+02;SOR=1.061;VQSLOD=4.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1546,111,0 2 202469472 rs7572583 A G 530.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.42;SB=-3.677e+01;SOR=4.047;VQSLOD=8.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:559,42,0 2 202484003 . G GC 462.73 PASS AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;RPA=1,2;RU=C;SB=0.00;SOR=4.977;STR;VQSLOD=8.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:12:33:500,33,0 2 202491995 rs2540450 G A 1644.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.828;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=3.734;HaplotypeScore=4.4305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-0.564;SB=-4.980e+02;SOR=1.102;VQSLOD=7.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:57,62:119:99:1673,0,1512 2 202499683 rs56162425 C G 759.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.619;HaplotypeScore=2.8437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=1.279;SB=-1.950e+02;SOR=1.308;VQSLOD=7.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,28:56:99:788,0,681 2 202501448 rs1208081 T C 618.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.68;ReadPosRankSum=-1.685;SB=-2.190e+02;SOR=0.732;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:14,21:35:99:647,0,404 2 202505719 . A AT 405.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.354;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.99;RPA=13,14;RU=T;ReadPosRankSum=-0.733;SB=-1.130e+02;SOR=0.673;STR;VQSLOD=8.12;culprit=FS GT:AD:DP:GQ:PL 0/1:8,21:35:99:443,0,114 2 202505740 rs2540424 T A 231.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.770;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.73;ReadPosRankSum=-1.474;SB=-1.611e+01;SOR=0.818;VQSLOD=9.00;culprit=QD GT:AD:DP:GQ:PL 0/1:20,10:30:99:260,0,541 2 202507982 rs6723016 T C 755.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.438;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.327;HaplotypeScore=2.7186;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=-1.016;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-0.283;SB=-5.090e+02;SOR=0.385;VQSLOD=0.030;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,32:67:99:784,0,920 2 202508115 rs6736435 A C 443.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.237;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.245;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=0.694;SB=-2.370e+02;SOR=0.395;VQSLOD=9.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,19:47:99:472,0,821 2 202509814 rs3754932 T C 693.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.233;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=1.700;SB=-3.601e+01;SOR=0.850;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:19,22:41:99:722,0,591 2 202512449 rs11894115 C T 673.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.609;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.849;HaplotypeScore=1.8315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.95;ReadPosRankSum=-0.079;SB=-3.570e+02;SOR=0.563;VQSLOD=8.86;culprit=QD GT:AD:DP:GQ:PL 0/1:68,29:97:99:702,0,1974 2 202514201 rs10194353 C T 421.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.636;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=-0.750;SB=-1.210e+02;SOR=0.798;VQSLOD=8.73;culprit=FS GT:AD:DP:GQ:PL 0/1:24,18:42:99:450,0,692 2 202519468 rs75408533 T A 362.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.486;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=5.226;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.841;SB=-2.701e+01;SOR=2.235;VQSLOD=5.77;culprit=FS GT:AD:DP:GQ:PL 0/1:11,13:24:99:391,0,272 2 202523347 rs2597900 C T 1089.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.14;SB=-3.870e+02;SOR=1.885;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:84:1118,84,0 2 202526353 rs12052740 T C 431.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.122;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=-0.753;SB=-3.577e+01;SOR=0.223;VQSLOD=8.18;culprit=FS GT:AD:DP:GQ:PL 0/1:13,14:27:99:460,0,398 2 202545374 rs16837990 G C 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.543;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=0.789;SB=-1.765e+00;SOR=1.112;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 0/1:14,9:23:99:295,0,375 2 202546113 rs1208073 T C 868.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.75;SB=-1.195e+02;SOR=3.528;VQSLOD=8.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:66:897,66,0 2 202547528 rs16838004 A T 685.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=2.002;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.14;ReadPosRankSum=-0.184;SB=-2.730e+02;SOR=0.985;VQSLOD=6.92;culprit=QD GT:AD:DP:GQ:PL 0/1:45,30:75:99:714,0,1087 2 202549684 rs71025250 GA G 410.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQ0=0;MQRankSum=0.043;QD=12.08;RPA=11,10;RU=A;ReadPosRankSum=-0.372;SB=-1.120e+02;SOR=0.723;STR;VQSLOD=2.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,21:34:99:448,0,265 2 202555132 rs2287050 T C 668.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.164;SB=-3.050e+02;SOR=1.029;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:27,27:54:99:697,0,635 2 202557702 rs6725443 C T 2833.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.52;SB=-1.351e+03;SOR=1.445;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:2862,208,0 2 202558415 rs7590550 T C 220.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.827;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=-1.742;SB=0.00;SOR=0.307;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:14,8:22:99:249,0,469 2 202566741 rs7603563 T C 684.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.33;SB=-7.197e+01;SOR=3.611;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:51:713,51,0 2 202566764 rs3731707 C T 391.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=0.00;SOR=4.977;VQSLOD=8.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:420,33,0 2 202569992 rs3219171 A T 1903.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.27;SB=-1.004e+03;SOR=0.871;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1932,147,0 2 202570232 rs3219170 A G 939.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-4.210e+02;SOR=1.473;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:69:968,69,0 2 202571562 rs3219169 C T 624.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.490;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.191;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.671;SB=-2.190e+02;SOR=0.956;VQSLOD=7.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,24:47:99:653,0,601 2 202575821 rs3219168 G A 3131.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8315;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.32;SB=-1.532e+03;SOR=1.085;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:3160,238,0 2 202575942 rs10200479 C T 572.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.582;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-0.590;SB=-1.240e+02;SOR=0.713;VQSLOD=10.20;culprit=FS GT:AD:DP:GQ:PL 0/1:24,20:44:99:601,0,642 2 202575965 rs16838095 C A 597.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.499;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=-0.383;SB=-1.300e+02;SOR=0.706;VQSLOD=10.30;culprit=FS GT:AD:DP:GQ:PL 0/1:17,22:39:99:626,0,525 2 202580370 rs3219167 G A 123.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.890;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.19;ReadPosRankSum=0.990;SB=-9.732e-01;SOR=1.284;VQSLOD=8.81;culprit=QD GT:AD:DP:GQ:PL 0/1:14,6:20:99:152,0,432 2 202589257 rs3219163 T C 331.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.930;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=-1.141;SB=-7.200e+01;SOR=0.741;VQSLOD=9.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,12:19:99:360,0,193 2 202593280 rs3219161 G A 1392.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.822;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=1.652;HaplotypeScore=1.9968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.814;SB=-7.750e+02;SOR=0.462;VQSLOD=9.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,52:100:99:1421,0,1225 2 202603273 . T C 568.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.967;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.582;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.22;ReadPosRankSum=-0.771;SB=-1.850e+02;SOR=0.301;VQSLOD=8.42;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,20:40:99:597,0,579 2 202622509 rs28729117 T C 238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.208;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=0.987;SB=-3.301e+01;SOR=0.976;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:267,0,183 2 202625615 rs3219156 C T 2746.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.91;SB=-1.480e+03;SOR=1.167;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:2775,205,0 2 202626625 rs2075194 A C 318.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.255;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.683;SB=0.00;SOR=0.481;VQSLOD=10.17;culprit=FS GT:AD:DP:GQ:PL 0/1:13,10:23:99:347,0,434 2 202633582 rs3219153 A G 1197.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.896;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.647;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.01;ReadPosRankSum=-0.483;SB=-8.570e+02;SOR=0.738;VQSLOD=8.36;culprit=QD GT:AD:DP:GQ:PL 0/1:75,58:133:99:1226,0,1957 2 202633725 rs11447821 T TA 242.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;DB;DP=35;ExcessHet=3.0103;FS=11.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.37;RPA=13,14;RU=A;ReadPosRankSum=-0.219;SB=-8.351e+01;SOR=0.026;STR;VQSLOD=5.21;culprit=FS GT:AD:DP:GQ:PL 0/1:16,13:35:99:280,0,289 2 202688293 rs4675229 A G 716.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.13;SB=-1.245e+02;SOR=3.160;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:745,54,0 2 202712095 rs917958 A C 1729.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4161;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.21;SB=-9.480e+02;SOR=1.376;VQSLOD=5.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:67:99:1758,129,0 2 202741064 rs2072504 G A 1651.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.94;SB=-1.961e+02;SOR=3.958;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1680,126,0 2 202741256 rs4675235 A T 4987.77 PASS AC=2;AF=1.00;AN=2;DB;DP=171;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.17;SB=-2.901e+03;SOR=0.882;VQSLOD=4.59;culprit=DP GT:AD:DP:GQ:PL 1/1:0,171:171:99:5016,373,0 2 202741269 rs4675236 G A 4666.77 PASS AC=2;AF=1.00;AN=2;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=-2.523e+03;SOR=0.974;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,151:151:99:4695,355,0 2 202939654 rs10221698 T C 1325.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.282;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.758;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.008;SB=-8.030e+02;SOR=0.613;VQSLOD=9.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,48:94:99:1354,0,1104 2 202939836 rs16838742 G C 913.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.635;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-1.092;SB=-4.530e+02;SOR=0.723;VQSLOD=8.66;culprit=FS GT:AD:DP:GQ:PL 0/1:39,37:76:99:942,0,1052 2 202955454 rs1568535 G C 1646.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.210;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.783;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.98;ReadPosRankSum=0.747;SB=-7.650e+02;SOR=0.602;VQSLOD=9.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,55:98:99:1675,0,1128 2 202974527 . AGT A 241.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.43;ReadPosRankSum=0.000;SB=-4.900e+01;SOR=0.223;VQSLOD=8.37;culprit=FS GT:AD:DP:GQ:PL 0/1:12,6:19:99:279,0,610 2 202989742 rs56243480 G A 177.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=0.702;SB=-4.176e+01;SOR=0.223;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:206,0,149 2 202990187 rs4675261 A G 1352.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-5.570e+02;SOR=1.559;VQSLOD=6.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1381,99,0 2 202990653 rs56293728 G A 386.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.680;HaplotypeScore=12.2580;MLEAC=1;MLEAF=0.500;MQ=58.70;MQ0=0;MQRankSum=1.121;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=-0.273;SB=-1.600e+02;SOR=0.307;VQSLOD=0.190;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,13:26:99:415,0,346 2 202990704 rs56046075 T C 386.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.72;SB=0.00;SOR=4.804;VQSLOD=7.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:415,30,0 2 203003066 rs71942632 G GGTGT 892.73 PASS AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.89;RPA=7,9;RU=GT;SB=-6.676e+01;SOR=4.174;STR;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:45:930,45,0 2 203003085 rs16838883 T C 302.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.258;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=4.434;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-1.103;SB=-1.460e+02;SOR=0.129;VQSLOD=10.28;culprit=SOR GT:AD:DP:GQ:PL 0/1:9,14:23:99:331,0,276 2 203029951 rs7582695 T A 312.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.109;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.865;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=-0.570;SB=-1.105e+02;SOR=0.144;VQSLOD=9.85;culprit=SOR GT:AD:DP:GQ:PL 0/1:6,13:19:99:341,0,191 2 203051886 rs6722588 C T 256.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.608;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=0.735;SB=-9.732e-01;SOR=2.712;VQSLOD=5.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,9:18:99:285,0,246 2 203066286 rs4673234 G T 457.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQ0=0;MQRankSum=-3.381;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=-1.007;SB=-3.060e+02;SOR=0.631;VQSLOD=2.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,20:49:99:486,0,730 2 203066419 rs10931992 C T 346.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.362;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQ0=0;MQRankSum=-0.836;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=0.029;SB=-1.290e+02;SOR=0.582;VQSLOD=4.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,13:24:99:375,0,317 2 203079307 rs3769817 T C 145.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.200;SB=0.00;SOR=0.693;VQSLOD=10.40;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:174,0,164 2 203139844 rs80282360 T C 204.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=-1.123;SB=-5.600e+01;SOR=0.859;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:13,8:21:99:233,0,358 2 203152355 rs7572505 G A 849.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.882;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=-0.026;SB=-3.260e+02;SOR=0.497;VQSLOD=10.13;culprit=FS GT:AD:DP:GQ:PL 0/1:21,34:55:99:878,0,549 2 203154953 rs1474001 G A 199.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.649;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=0.735;SB=0.00;SOR=0.582;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:228,0,246 2 203155015 rs11310035 GT G 342.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;DB;DP=50;ExcessHet=3.0103;FS=3.254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.99;RPA=4,3;RU=T;ReadPosRankSum=1.520;SB=-1.360e+02;SOR=0.242;STR;VQSLOD=8.74;culprit=QD GT:AD:DP:GQ:PL 0/1:34,15:50:99:380,0,1046 2 203155936 rs3731700 A C 829.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.120;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=-0.483;SB=-5.020e+02;SOR=0.645;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:46,32:78:99:858,0,1224 2 203384776 . C CT 236.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;RPA=12,13;RU=T;ReadPosRankSum=0.300;SB=-3.077e+01;SOR=1.179;STR;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:4,15:27:47:274,0,47 2 203421199 rs1061157 G A 991.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.271;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=-0.246;SB=-4.930e+02;SOR=0.776;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:43,40:83:99:1020,0,1092 2 203621756 rs59752321 C T 633.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.35;SB=-3.240e+02;SOR=1.136;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:48:662,48,0 2 203621800 rs16839308 A C 665.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.124;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.49;ReadPosRankSum=-1.367;SB=-2.850e+02;SOR=1.368;VQSLOD=6.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,23:36:99:694,0,277 2 203650558 rs145836386 TA T 225.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.592;SB=0.00;SOR=0.321;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:12,7:19:99:263,0,502 2 203651278 rs55689177 CA C 811.73 PASS AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.37;RPA=10,9;RU=A;SB=-1.671e+02;SOR=2.765;STR;VQSLOD=5.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:96:849,96,0 2 203651475 . A AT 840.92 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;DP=58;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.16;RPA=13,14;RU=T;ReadPosRankSum=-1.483;SB=-2.743e+02;SOR=0.299;STR;VQSLOD=9.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,41:58:23:877,0,23 2 203690387 rs1344959 G A 568.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.94;SB=-1.991e+02;SOR=1.981;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:45:597,45,0 2 203693559 rs4675296 C G 2136.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.49;SB=-1.304e+03;SOR=1.022;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2165,154,0 2 203705787 rs1971819 G C 464.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=-1.593e+02;SOR=1.911;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:493,36,0 2 203748544 . A AT 303.73 PASS AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;RPA=10,11;RU=T;SB=0.00;SOR=5.283;STR;VQSLOD=4.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:18:39:341,39,0 2 203749392 rs67419515 C CTTT 769.73 PASS AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.70;SB=0.00;SOR=5.421;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:15:42:807,42,0 2 203880992 rs2351524 T C 1140.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-2.401e+02;SOR=2.899;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:87:1169,87,0 2 203921270 rs4673241 A G 1989.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-7.010e+02;SOR=2.056;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2018,144,0 2 203996870 rs6748898 A G 1613.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-4.080e+02;SOR=2.746;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:52:99:1642,120,0 2 204002809 rs10180815 A C 524.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.80;SB=-7.597e+01;SOR=3.258;VQSLOD=7.37;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,16:16:42:553,42,0 2 204036545 . C CT 191.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;RPA=14,15;RU=T;ReadPosRankSum=-0.919;SB=-2.977e+01;SOR=0.527;STR;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:5,10:16:65:229,0,65 2 204054834 rs62182253 G A 1143.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.01;SB=-2.677e+01;SOR=5.549;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:96:1172,96,0 2 204054882 rs148174619 TACACACACACACACACACAC T 7967.73 PASS AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;RPA=25,15;RU=AC;SB=-1.577e+03;SOR=2.613;STR;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:48:99:8005,117,0 2 204062061 rs4675323 A G 2921.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6824;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.22;SB=-1.878e+03;SOR=0.818;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:2950,220,0 2 204090887 rs2351773 C G 1701.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.39;SB=-1.037e+03;SOR=0.841;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1730,123,0 2 204110748 rs56317341 G A 411.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.84;SB=0.00;SOR=4.977;VQSLOD=7.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:440,33,0 2 204111394 rs13015873 T C 1343.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=112.1149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.46;SB=-2.061e+02;SOR=3.556;VQSLOD=5.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1372,102,0 2 204111398 rs10586509 GTTAA G 2789.73 PASS AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-3.641e+02;SOR=3.556;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:2827,117,0 2 204111443 rs6435176 A G 2680.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.91;SB=-9.490e+02;SOR=1.939;VQSLOD=7.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2709,196,0 2 204111705 rs6751894 T C 730.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.80;SB=0.00;SOR=6.184;VQSLOD=8.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:759,63,0 2 204116660 rs3731694 A T 1726.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.912;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.78;ReadPosRankSum=0.896;SB=-5.850e+02;SOR=1.091;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:1,59:60:99:1755,132,0 2 204116690 rs2043449 C T 2115.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.84;SB=-9.030e+02;SOR=1.802;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2144,160,0 2 204116887 rs2351771 T G 1467.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.1321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=-4.800e+02;SOR=2.256;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1496,111,0 2 204154552 rs1048013 C T 1153.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.84;SB=-5.990e+02;SOR=1.022;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:87:1182,87,0 2 204154686 rs10170454 A G 441.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.58;SB=0.00;SOR=5.136;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:470,36,0 2 204157238 rs6727994 A G 408.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=0.00;SOR=4.977;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:437,33,0 2 204206977 rs4675333 C T 1620.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.94;SB=-9.520e+02;SOR=1.009;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1649,123,0 2 204216255 . G GT 165.37 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.81;RPA=15,16;RU=T;ReadPosRankSum=0.457;SB=0.00;SOR=2.985;STR;VQSLOD=4.07;culprit=FS GT:AD:DP:GQ:PL 0/1:2,12:14:8:202,0,8 2 204261723 rs3731652 G C 1751.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.25;SB=-1.079e+03;SOR=0.826;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1780,129,0 2 204305093 rs3814365 T C 1632.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.1055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.24;SB=-7.780e+02;SOR=0.931;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:56:99:1661,129,0 2 204322298 rs2469953 T C 2065.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=-1.308e+03;SOR=0.723;VQSLOD=7.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2094,150,0 2 204355822 rs2469962 G A 333.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-4.176e+01;SOR=3.258;VQSLOD=7.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:362,27,0 2 204360201 rs2305417 A G 700.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=0.00;SOR=5.994;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:729,57,0 2 204629421 . C T 522.77 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.51;SB=-3.200e+02;SOR=1.022;VQSLOD=4.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:39:551,39,0 2 204732850 rs231776 A G 2985.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=-1.268e+03;SOR=1.609;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:3014,220,0 2 204821494 rs4264550 C T 1043.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.545;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.944;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-1.251;SB=-3.400e+02;SOR=0.935;VQSLOD=7.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,41:79:99:1072,0,924 2 204824283 rs10172036 T G 860.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.299;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=4.508;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.12;MQ0=0;MQRankSum=1.265;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=0.471;SB=-4.890e+02;SOR=0.296;VQSLOD=0.230;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,35:89:99:889,0,1509 2 204824324 rs10183087 A C 1133.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.704;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=5.005;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQ0=0;MQRankSum=1.248;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=-0.480;SB=-6.950e+02;SOR=0.341;VQSLOD=0.286;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:65,43:108:99:1162,0,1771 2 205829991 rs236843 C T 1029.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.834;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=4.008;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=0.167;SB=-5.350e+02;SOR=0.763;VQSLOD=5.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,38:92:99:1058,0,1378 2 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0/1:34,25:59:99:732,0,999 2 205969220 rs2289025 G A 3388.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.97;SB=-1.345e+03;SOR=1.677;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3417,250,0 2 205978113 rs200294145 CAG C 828.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.061;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.40;ReadPosRankSum=0.028;SB=-7.297e+01;SOR=2.147;VQSLOD=8.16;culprit=FS GT:AD:DP:GQ:PL 1/1:3,34:37:93:866,93,0 2 205978117 rs3217407 GGTGT G 964.75 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;DB;DP=39;ExcessHet=3.0103;FS=2.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.67;RPA=15,13;RU=GT;ReadPosRankSum=0.133;SB=-3.402e+01;SOR=1.721;STR;VQSLOD=5.93;culprit=QD GT:AD:DP:GQ:PL 0/1:15,20:39:24:1002,0,24 2 205986321 rs2289023 A G 1034.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.528;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.717;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=-0.025;SB=-2.320e+02;SOR=1.259;VQSLOD=6.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,33:56:99:1063,0,569 2 205990353 rs2276676 C T 908.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.374;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=4.157;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=0.668;SB=-5.910e+02;SOR=0.348;VQSLOD=9.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,38:87:99:937,0,1238 2 206036918 rs736320 C T 952.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.053;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=5.015;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-1.170;SB=-3.120e+02;SOR=1.405;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 0/1:34,36:70:99:981,0,815 2 206041366 rs11329569 TA T 224.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;RPA=15,14;RU=A;ReadPosRankSum=0.448;SB=0.00;SOR=3.383;STR;VQSLOD=5.23;culprit=FS GT:AD:DP:GQ:PL 1/1:2,15:21:11:261,11,0 2 206050355 rs62172732 A G 126.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.539;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.67;ReadPosRankSum=0.044;SB=-6.500e+01;SOR=0.160;VQSLOD=8.50;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:155,0,367 2 206166580 rs11686273 G A 819.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=1.655;SB=-3.370e+02;SOR=0.628;VQSLOD=8.65;culprit=FS GT:AD:DP:GQ:PL 0/1:38,33:71:99:848,0,995 2 206364487 rs11687914 T C 1022.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.61;SB=-4.276e+01;SOR=5.211;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:78:1051,78,0 2 206364791 rs11683289 C G 1898.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.28;SB=-4.540e+02;SOR=2.670;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1927,144,0 2 206418032 rs6730102 G A 1663.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=-8.050e+02;SOR=1.238;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1692,129,0 2 206480393 rs17682782 C T 1053.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=20.8613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=-0.166;SB=-4.320e+02;SOR=0.680;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:33,42:77:99:1082,0,798 2 206481573 rs4673336 A G 407.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=0.00;SOR=5.283;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:436,36,0 2 206481612 rs35710107 TGA T 677.73 PASS AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;RPA=10,9;RU=GA;SB=0.00;SOR=5.784;STR;VQSLOD=8.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:715,51,0 2 206481804 rs10804149 T A 700.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.196;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.367;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=-1.977;SB=-2.270e+02;SOR=1.051;VQSLOD=6.25;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:15,26:41:99:729,0,347 2 206562036 . CTGTG C,CTG 814.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.40;RPA=16,14,15;RU=TG;SB=-7.894e+00;SOR=5.784;STR;VQSLOD=8.33;culprit=FS GT:AD:DP:GQ:PL 1/2:0,12,5:18:99:852,191,164,463,0,412 2 206562250 rs849558 C T 1810.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.21;SB=-1.074e+03;SOR=0.976;VQSLOD=7.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1839,135,0 2 206565500 rs3771051 C T 843.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.999;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=1.210;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=0.816;SB=-1.500e+02;SOR=1.078;VQSLOD=7.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,30:65:99:872,0,1014 2 206580714 rs849542 T G 250.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.453;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.778;SB=-4.276e+01;SOR=0.184;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:279,0,296 2 206581033 rs849541 G A 1696.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-4.280e+02;SOR=2.584;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1725,126,0 2 206592525 rs849527 A G 352.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.518;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=0.790;SB=0.00;SOR=1.609;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:6,13:19:99:381,0,178 2 206592695 rs849526 T C 1417.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=6.948;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=-0.422;SB=-8.600e+02;SOR=0.512;VQSLOD=5.24;culprit=FS GT:AD:DP:GQ:PL 0/1:66,55:121:99:1446,0,1627 2 206608039 rs849568 T C 2468.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=-9.850e+02;SOR=1.512;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2497,184,0 2 206608464 rs370820728 T TTTTG 229.87 PASS AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;QD=34.48;RPA=5,6;RU=TTTG;SB=0.00;SOR=3.611;STR;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,5:14:15:267,15,0 2 206614160 rs849560 A G 363.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=0.00;SOR=4.977;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:392,33,0 2 206614646 rs10932123 T G 746.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.321;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=-1.397;SB=-2.380e+02;SOR=1.071;VQSLOD=6.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,25:42:99:775,0,423 2 206630073 rs58931543 A AAC 322.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.07;RPA=9,10;RU=AC;ReadPosRankSum=1.576;SB=-7.000e+01;SOR=0.495;STR;VQSLOD=8.95;culprit=QD GT:AD:DP:GQ:PL 0/1:29,11:42:99:360,0,1099 2 206641239 TMP_ESP_2_206641239 TCGCA T 1099.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=24.26;ReadPosRankSum=1.620;SB=-2.720e+02;SOR=0.693;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 0/1:17,17:36:99:1137,0,1134 2 206641245 . T TA 695.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.354;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.74;ReadPosRankSum=1.379;SB=-1.710e+02;SOR=0.555;VQSLOD=7.75;culprit=FS GT:AD:DP:GQ:PL 0/1:15,17:32:99:733,0,638 2 206813906 rs75967462 A G 110.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.484;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.07;ReadPosRankSum=0.349;SB=-3.100e+01;SOR=1.179;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:139,0,203 2 206874339 rs817991 G A 486.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.268;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-0.819;SB=-1.990e+02;SOR=0.765;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:22,20:42:99:515,0,550 2 206911191 . C CA 1293.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.308;DP=60;ExcessHet=3.0103;FS=2.077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.93;RPA=10,11;RU=A;ReadPosRankSum=0.776;SB=-3.803e+02;SOR=1.508;STR;VQSLOD=5.61;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:5,54:60:75:1331,75,0 2 206911228 rs2909111 G A 1333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.184;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.12;MQ0=0;MQRankSum=0.828;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=0.752;SB=-6.430e+02;SOR=0.708;VQSLOD=3.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,54:89:99:1362,0,760 2 206921451 rs818009 G A 3454.77 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-1.794e+03;SOR=1.118;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,110:110:99:3483,256,0 2 206921763 rs17220727 C T 361.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.244;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.645;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=0.483;SB=-7.697e+01;SOR=0.283;VQSLOD=9.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,13:19:99:390,0,153 2 206927850 rs17286674 G A 440.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.371;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-0.670;SB=-3.400e+01;SOR=0.527;VQSLOD=10.17;culprit=FS GT:AD:DP:GQ:PL 0/1:18,15:33:99:469,0,566 2 207014657 rs148331378 TAA T 143.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQ0=0;MQRankSum=1.108;POSITIVE_TRAIN_SITE;QD=5.53;RPA=25,23;RU=A;ReadPosRankSum=1.406;SB=-2.506e+01;SOR=0.538;STR;VQSLOD=2.92;culprit=QD GT:AD:DP:GQ:PL 0/1:17,9:40:99:181,0,392 2 207024886 . G GC 971.73 PASS AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.80;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.19;RPA=3,4;RU=C;SB=-8.197e+01;SOR=4.255;STR;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:27:78:1009,78,0 2 207027821 rs34451626 A G 539.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.908;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=1.019;SB=0.00;SOR=0.643;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:19,18:37:99:568,0,645 2 207169433 . C T 1153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.570;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.30;ReadPosRankSum=-1.417;SB=-5.280e+02;SOR=0.631;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 0/1:63,49:112:99:1182,0,1665 2 207169731 rs10932150 G A 1485.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.489;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=5.072;HaplotypeScore=5.1296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=-0.840;SB=-5.460e+02;SOR=1.219;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 0/1:49,50:99:99:1514,0,1122 2 207172627 rs7582864 A G 2580.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.47;SB=-1.528e+03;SOR=0.846;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2609,187,0 2 207174316 rs3732084 T C 1806.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.83;SB=-9.130e+02;SOR=0.900;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1835,135,0 2 207395345 rs5838028 GA G 97.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.25;RPA=17,16;RU=A;ReadPosRankSum=0.000;SB=-4.141e+00;SOR=0.465;STR;VQSLOD=9.25;culprit=QD GT:AD:DP:GQ:PL 0/1:13,10:24:99:135,0,216 2 207452151 rs3832131 GT G 899.73 PASS AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.46;RPA=9,8;RU=T;SB=-2.030e+02;SOR=2.584;STR;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:36:99:937,102,0 2 207470884 rs4085933 T C 697.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;SB=0.00;SOR=5.892;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:726,54,0 2 207472573 rs1991537 A G 780.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.98;SB=0.00;SOR=6.091;VQSLOD=8.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:809,60,0 2 207472606 . G GT 885.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.863;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=25.31;RPA=10,11;RU=T;ReadPosRankSum=1.115;SB=-1.940e+02;SOR=1.244;STR;VQSLOD=7.88;culprit=FS GT:AD:DP:GQ:PL 1/1:1,34:37:77:852,77,0 2 207472683 rs10626869 C CTA 3576.73 PASS AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-1.619e+03;SOR=0.925;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:66:99:3614,196,0 2 207508741 rs4673360 C T 436.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=0.00;SOR=5.136;VQSLOD=8.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:465,36,0 2 207527840 rs2115591 G T 1943.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.167;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.174;SB=-1.061e+03;SOR=0.679;VQSLOD=8.37;culprit=DP GT:AD:DP:GQ:PL 0/1:90,67:157:99:1972,0,2459 2 207569715 rs16838626 T C 1246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.182;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=1.213;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=0.993;SB=-2.360e+02;SOR=1.122;VQSLOD=6.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,44:69:99:1275,0,589 2 207569803 rs16838630 A C 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=2.404;SB=0.00;SOR=1.765;VQSLOD=8.82;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,10:14:99:317,0,103 2 207570705 rs16838632 A G 378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.001;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.315;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.94;ReadPosRankSum=2.342;SB=-7.000e+01;SOR=1.609;VQSLOD=5.10;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,13:20:99:407,0,159 2 207572133 rs67248530 A C 2565.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.046;DB;DP=230;Dels=0.00;ExcessHet=3.0103;FS=3.726;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=0.015;SB=-1.117e+03;SOR=0.930;VQSLOD=5.68;culprit=DP GT:AD:DP:GQ:PL 0/1:129,101:230:99:2594,0,3487 2 207572341 rs16838641 T G 618.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.550;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=2.945;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.75;ReadPosRankSum=0.664;SB=-8.297e+01;SOR=0.186;VQSLOD=8.97;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,20:33:99:647,0,407 2 207604306 rs374989061 C G 482.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.743;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.62;ReadPosRankSum=0.563;SB=-3.330e+02;SOR=0.588;VQSLOD=7.87;culprit=QD GT:AD:DP:GQ:PL 0/1:34,22:56:99:511,0,872 2 207613980 rs13427620 G A 320.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.736;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-0.725;SB=-1.765e+00;SOR=1.483;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:13,11:24:99:349,0,428 2 207621759 rs1990849 A G 1755.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.43;SB=-4.570e+02;SOR=2.540;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1784,132,0 2 207636518 rs12620432 C T 264.77 PASS 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PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.095;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.27;ReadPosRankSum=-0.845;SB=0.00;SOR=1.609;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:8,17:25:99:560,0,232 2 207833848 rs7582092 A G 1260.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.363;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=1.846;HaplotypeScore=1.8997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=0.565;SB=-6.000e+02;SOR=0.487;VQSLOD=10.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,54:96:99:1289,0,1096 2 207945785 . A G 251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.455;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.804;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.95;ReadPosRankSum=0.776;SB=-5.300e+01;SOR=1.179;VQSLOD=5.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,10:23:99:280,0,328 2 207974818 rs2244923 C T 844.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.710;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-1.256;SB=-2.570e+02;SOR=0.829;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:37,30:67:99:873,0,992 2 207974875 rs2244918 A G 512.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.733;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=0.764;SB=-8.700e+01;SOR=0.836;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:25,18:43:99:541,0,724 2 207988613 rs2700166 C T 2076.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.45;SB=-1.064e+03;SOR=1.044;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2105,163,0 2 207989230 rs763865 G T 602.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.514;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.780;SB=-2.960e+02;SOR=0.704;VQSLOD=8.97;culprit=FS GT:AD:DP:GQ:PL 0/1:29,22:51:99:631,0,788 2 207998800 rs2284934 C T 709.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=0.675;SB=-3.900e+02;SOR=0.668;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:33,30:63:99:738,0,796 2 207999021 rs2284933 G C 367.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.356;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.412;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-0.356;SB=-2.480e+02;SOR=0.414;VQSLOD=9.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,15:31:99:396,0,425 2 208031796 rs2037893 C G 2878.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5173;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.63;SB=-7.520e+02;SOR=2.737;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:95:99:2907,232,0 2 208031992 rs1269424 T A 5085.77 PASS AC=2;AF=1.00;AN=2;DB;DP=172;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8684;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-2.619e+03;SOR=1.133;VQSLOD=5.64;culprit=DP GT:AD:DP:GQ:PL 1/1:0,172:172:99:5114,391,0 2 208447642 rs12478868 A T 273.80 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.82;SB=-1.891e+02;SOR=1.022;VQSLOD=3.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:21:302,21,0 2 208477852 rs2551949 G A 1617.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-5.400e+02;SOR=2.049;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1646,120,0 2 208477956 rs2709416 C T 2618.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.45;SB=-1.612e+03;SOR=0.788;VQSLOD=6.61;culprit=DP GT:AD:DP:GQ:PL 1/1:0,86:86:99:2647,193,0 2 208478055 rs17520056 A G 1139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.382;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=3.846;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=-1.165;SB=-4.010e+02;SOR=1.172;VQSLOD=6.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:65,39:104:99:1168,0,1866 2 208485737 rs2709415 T C 1115.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.61;SB=-4.400e+02;SOR=1.923;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:87:1144,87,0 2 208489101 rs4234080 C A 1277.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.332;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=4.420;HaplotypeScore=6.9395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=-0.454;SB=-5.520e+02;SOR=0.353;VQSLOD=9.95;culprit=FS GT:AD:DP:GQ:PL 0/1:40,49:90:99:1306,0,1055 2 208601840 rs7564254 C T 465.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.87;SB=0.00;SOR=5.283;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:494,39,0 2 208633413 rs4675711 T C 2025.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-9.140e+02;SOR=1.402;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2054,147,0 2 208973011 rs12624138 A G 724.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;SB=-3.660e+02;SOR=1.358;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:54:753,54,0 2 208977323 rs11679871 A G 142.77 PASS 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AC=1;AF=0.500;AN=2;BaseQRankSum=2.977;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=2.276;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.83;ReadPosRankSum=0.484;SB=-6.300e+01;SOR=1.229;VQSLOD=6.66;culprit=QD GT:AD:DP:GQ:PL 0/1:7,6:13:99:143,0,178 2 208986385 rs2305429 A G 2446.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.06;SB=-8.590e+02;SOR=1.842;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:75:99:2475,178,0 2 208986637 rs2305430 T C 3656.77 PASS AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.47;SB=-1.952e+03;SOR=1.078;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,120:120:99:3685,271,0 2 208989037 rs2242074 A G 385.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=0.686;SB=-2.250e+02;SOR=0.631;VQSLOD=10.33;culprit=FS GT:AD:DP:GQ:PL 0/1:9,15:24:99:414,0,281 2 208994045 rs2242073 T G 194.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=1.299;SB=-3.500e+01;SOR=1.402;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:98:223,0,98 2 209007559 rs796287 T G 1280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.792;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=1.579;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=2.478;SB=-7.500e+02;SOR=0.532;VQSLOD=8.96;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:57,51:108:99:1309,0,1386 2 209010558 rs2854723 A G 924.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.164;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=7.556;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=-0.893;SB=-3.260e+02;SOR=0.132;VQSLOD=8.29;culprit=FS GT:AD:DP:GQ:PL 0/1:25,38:64:99:953,0,679 2 209010891 rs2289917 G A 2171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.944;DB;DP=160;Dels=0.00;ExcessHet=3.0103;FS=2.943;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=-0.857;SB=-8.510e+02;SOR=0.957;VQSLOD=7.63;culprit=DP GT:AD:DP:GQ:PL 0/1:78,82:160:99:2200,0,2091 2 209025923 rs2441351 G T 126.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=-0.709;SB=-9.732e-01;SOR=1.802;VQSLOD=5.89;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:14:99:155,0,281 2 209027871 rs796279 A G 880.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.027;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.523;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=-0.395;SB=-2.760e+02;SOR=1.121;VQSLOD=7.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,30:53:99:909,0,505 2 209028191 rs796280 C T 1793.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.585;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=-0.755;SB=-1.016e+03;SOR=0.672;VQSLOD=7.83;culprit=DP GT:AD:DP:GQ:PL 0/1:93,70:163:99:1822,0,2568 2 209030330 . G GT 179.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;RPA=11,12;RU=T;ReadPosRankSum=1.693;SB=-3.077e+01;SOR=0.269;STR;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:20:99:217,0,139 2 209030572 rs6721025 A G 293.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.702;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.568;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.34;ReadPosRankSum=0.679;SB=-4.700e+01;SOR=1.022;VQSLOD=6.13;culprit=QD GT:AD:DP:GQ:PL 0/1:28,12:40:99:322,0,768 2 209030578 rs796281 A G 767.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.568;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=-0.886;SB=-2.570e+02;SOR=0.446;VQSLOD=8.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,28:40:99:796,0,302 2 209035485 rs6435420 T G 934.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=-4.076e+01;SOR=5.058;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:72:963,72,0 2 209035658 rs6748431 C T 3787.77 PASS AC=2;AF=1.00;AN=2;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.59;SB=-2.341e+03;SOR=0.790;VQSLOD=6.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,128:128:99:3816,280,0 2 209035849 rs4292037 A C 539.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.81;SB=-7.797e+01;SOR=3.126;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:568,42,0 2 209036457 rs72193355 G GCCACTCCAT 2045.73 PASS AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.68;SB=-3.715e+02;SOR=2.712;VQSLOD=5.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:51:2083,51,0 2 209036605 rs10932244 T C 2558.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;SB=-1.307e+03;SOR=1.193;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2587,187,0 2 209036712 rs10804166 T C 3122.77 PASS AC=2;AF=1.00;AN=2;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.65;SB=-1.911e+03;SOR=0.787;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,109:109:99:3151,232,0 2 209036778 rs6435421 A G 2400.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-1.078e+03;SOR=1.252;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2429,184,0 2 209037005 rs7564942 T C 526.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-8.097e+01;SOR=3.383;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:45:555,45,0 2 209045657 rs10208685 T C 504.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.77;SB=0.00;SOR=5.421;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:533,39,0 2 209045839 rs56342568 T C 319.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-1.140;SB=0.00;SOR=0.616;VQSLOD=8.64;culprit=FS GT:AD:DP:GQ:PL 0/1:12,11:23:99:348,0,358 2 209046100 rs6751157 G A 1091.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.329;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=0.288;SB=-2.450e+02;SOR=0.760;VQSLOD=9.16;culprit=FS GT:AD:DP:GQ:PL 0/1:42,40:83:99:1120,0,1145 2 209046162 rs6435425 G A 385.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.932;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.074;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=0.675;SB=-7.297e+01;SOR=0.141;VQSLOD=9.31;culprit=SOR GT:AD:DP:GQ:PL 0/1:11,15:26:99:414,0,330 2 209046164 rs6435426 A G 383.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.554;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=1.042;SB=-3.876e+01;SOR=0.293;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 0/1:11,14:25:99:412,0,353 2 209049830 . T TC 270.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.802;DP=25;ExcessHet=3.0103;FS=4.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;RPA=3,4;RU=C;ReadPosRankSum=0.561;SB=-3.600e+01;SOR=1.802;STR;VQSLOD=6.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,10:25:99:308,0,391 2 209049840 rs10804167 C T 182.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=5.180;HaplotypeScore=2.6195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=0.408;SB=-1.570e+02;SOR=0.092;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:211,0,269 2 209049899 rs10497896 G C 86.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.572;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.23;ReadPosRankSum=-0.817;SB=-1.765e+00;SOR=0.941;VQSLOD=9.08;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:99:115,0,251 2 209051586 rs7572263 A G 445.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=0.703;SB=-7.897e+01;SOR=0.527;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:5,16:21:99:474,0,125 2 209101905 rs57383668 GA G 1323.73 PASS AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.47;RPA=10,9;RU=A;SB=-5.140e+02;SOR=1.270;STR;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:56:99:1361,150,0 2 209104740 rs16840789 G C 1387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.161;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=3.083;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=0.393;SB=-7.620e+02;SOR=0.393;VQSLOD=9.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,44:78:99:1416,0,971 2 209120258 rs12478635 G T 348.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.651;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.36;ReadPosRankSum=0.973;SB=-3.976e+01;SOR=0.446;VQSLOD=9.92;culprit=FS GT:AD:DP:GQ:PL 0/1:7,12:19:99:377,0,226 2 209120640 rs1446325 C T 708.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.82;SB=-1.801e+02;SOR=2.400;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:737,57,0 2 209138946 rs6705163 C T 1270.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-2.640e+02;SOR=2.891;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:96:1299,96,0 2 209163556 rs7569723 C T 2518.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-8.590e+02;SOR=2.168;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:86:99:2547,196,0 2 209166830 rs10497897 T G 314.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.188;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=0.152;SB=0.00;SOR=0.693;VQSLOD=10.38;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:343,0,320 2 209168853 rs893256 C T 1549.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.00;SB=-6.430e+02;SOR=1.519;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1578,114,0 2 209176807 rs12624141 T G 456.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.28;SB=0.00;SOR=5.136;VQSLOD=7.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:485,36,0 2 209179811 rs16840911 C T 552.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.74;ReadPosRankSum=-1.649;SB=0.00;SOR=1.179;VQSLOD=9.96;culprit=FS GT:AD:DP:GQ:PL 0/1:11,17:28:99:581,0,340 2 209179939 rs16840913 A G 2417.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.180;DB;DP=182;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=0.568;SB=-1.109e+03;SOR=0.661;VQSLOD=7.62;culprit=DP GT:AD:DP:GQ:PL 0/1:86,96:182:99:2446,0,2264 2 209180234 rs67470395 C CTTTG 3862.73 PASS AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.50;RPA=1,2;RU=TTTG;SB=-1.143e+03;SOR=1.888;STR;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:71:99:3900,187,0 2 209182480 rs10174541 A G 215.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.522;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=1.790;SB=0.00;SOR=0.836;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:244,0,147 2 209182499 . T TA 224.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQ0=0;MQRankSum=1.049;POSITIVE_TRAIN_SITE;QD=10.70;RPA=8,9;RU=A;ReadPosRankSum=0.247;SB=-5.304e+01;SOR=0.368;STR;VQSLOD=3.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,11:21:99:262,0,200 2 209182548 rs10497898 A G 458.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.584;HaplotypeScore=1.8237;MLEAC=1;MLEAF=0.500;MQ=60.55;MQ0=0;MQRankSum=1.549;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=-1.550;SB=-1.790e+02;SOR=0.238;VQSLOD=0.250;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,18:39:99:487,0,591 2 209182677 rs112715599 CAGTTCAGCAGTGA C 3659.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQ0=0;MQRankSum=1.373;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=1.493;SB=-1.366e+03;SOR=0.759;VQSLOD=1.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:47,26:82:99:3697,0,7256 2 209184980 rs10932258 G A 348.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.83;SB=-2.361e+02;SOR=0.836;VQSLOD=5.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:27:377,27,0 2 209184999 rs10932259 C T 377.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.18;SB=-2.560e+02;SOR=0.818;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:30:406,30,0 2 209189442 rs7355562 T C 58.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.88;ReadPosRankSum=-0.755;SB=0.00;SOR=0.223;VQSLOD=9.25;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:87:87,0,233 2 209189912 rs893255 A G 1796.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.41;SB=-1.623e+02;SOR=4.317;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1825,135,0 2 209190330 rs2363468 T C 2465.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.88;SB=-9.130e+02;SOR=1.578;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:76:99:2494,184,0 2 209190519 rs893254 A T 4520.77 PASS AC=2;AF=1.00;AN=2;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.55;SB=-2.881e+03;SOR=0.816;VQSLOD=6.36;culprit=DP GT:AD:DP:GQ:PL 1/1:0,153:153:99:4549,331,0 2 209190528 rs893253 C G 4843.77 PASS AC=2;AF=1.00;AN=2;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.66;SB=-2.855e+03;SOR=0.906;VQSLOD=4.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,153:153:99:4872,349,0 2 209190632 rs999890 T G 1448.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=7.013;HaplotypeScore=1.8899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=-0.072;SB=-5.600e+02;SOR=1.212;VQSLOD=5.60;culprit=FS GT:AD:DP:GQ:PL 0/1:68,52:120:99:1477,0,1948 2 209190649 rs999891 A G 1418.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.628;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=11.944;HaplotypeScore=2.6946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-1.037;SB=-5.480e+02;SOR=1.364;VQSLOD=5.20;culprit=FS GT:AD:DP:GQ:PL 0/1:68,51:119:99:1447,0,1902 2 209191082 rs1529979 C A 2970.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9048;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.04;SB=-1.016e+03;SOR=1.754;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2999,226,0 2 209191099 rs1529978 T C 2624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;SB=-1.047e+03;SOR=1.609;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2653,208,0 2 209194696 rs1437414 G C 571.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.94;SB=-2.331e+02;SOR=1.244;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:45:600,45,0 2 209195099 rs1866045 G A 709.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.80;SB=0.00;SOR=5.994;VQSLOD=8.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:738,57,0 2 209195133 rs12694109 T C 1074.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.67;SB=-1.185e+02;SOR=3.981;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:84:1103,84,0 2 209195435 rs145042764 A C 791.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.153;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=7.198;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=-0.198;SB=-2.601e+01;SOR=2.275;VQSLOD=5.74;culprit=FS GT:AD:DP:GQ:PL 0/1:25,26:51:99:820,0,666 2 209199945 rs2363469 A G 682.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.14;SB=-8.297e+01;SOR=3.716;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:711,54,0 2 209201739 rs7596571 T C 1277.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.53;SB=-3.277e+01;SOR=5.838;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1306,108,0 2 209203122 rs4675756 C G 619.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.43;SB=0.00;SOR=5.892;VQSLOD=8.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:48:648,48,0 2 209204243 rs148994064 G A 1206.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.859;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=7.390;HaplotypeScore=4.3582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=-0.035;SB=-5.690e+02;SOR=1.388;VQSLOD=5.01;culprit=FS GT:AD:DP:GQ:PL 0/1:61,51:112:99:1235,0,1656 2 209204714 rs2289171 G A 677.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.104;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=-1.226;SB=-1.950e+02;SOR=0.680;VQSLOD=10.09;culprit=FS GT:AD:DP:GQ:PL 0/1:13,24:37:99:706,0,370 2 209209827 rs2304544 G A 1268.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3772;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.43;SB=-5.350e+02;SOR=1.426;VQSLOD=5.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:49:96:1297,96,0 2 209209997 rs2043718 C T 760.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.26;SB=-1.851e+02;SOR=2.670;VQSLOD=5.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:63:789,63,0 2 209212707 rs2304545 G A 1445.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.666;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=1.404;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-1.279;SB=-9.700e+02;SOR=0.540;VQSLOD=8.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:67,61:128:99:1474,0,1663 2 209214770 rs2118297 A G 1607.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.72;SB=-1.046e+03;SOR=0.836;VQSLOD=6.51;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,58:58:99:1636,120,0 2 209215448 rs994696 A G 1543.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.31;SB=-3.190e+02;SOR=2.935;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1572,114,0 2 209215571 rs13020468 T C 1825.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.017;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.605;HaplotypeScore=3.5133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=-0.751;SB=-9.390e+02;SOR=0.773;VQSLOD=8.06;culprit=DP GT:AD:DP:GQ:PL 0/1:79,73:152:99:1854,0,1941 2 209215586 rs994697 A G 4672.77 PASS AC=2;AF=1.00;AN=2;DB;DP=160;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.20;SB=-2.834e+03;SOR=0.911;VQSLOD=6.40;culprit=DP GT:AD:DP:GQ:PL 1/1:0,160:160:99:4701,334,0 2 209219190 rs6435453 A G 1286.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.97;SB=-1.175e+02;SOR=4.174;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:96:1315,96,0 2 209220157 rs10208191 G T 397.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=0.00;SOR=4.977;VQSLOD=7.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:426,33,0 2 209224874 rs11357589 CA C 1429.73 PASS AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;RPA=2,1;RU=A;SB=-5.290e+02;SOR=1.352;STR;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:34:99:1467,99,0 2 209293168 rs962595 C T 1138.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.78;SB=-3.090e+02;SOR=2.242;VQSLOD=5.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:90:1167,90,0 2 209315446 rs114981244 T C 583.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.309;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=5.243;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.11;ReadPosRankSum=2.336;SB=-3.620e+02;SOR=0.263;VQSLOD=6.83;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:48,24:72:99:612,0,1282 2 209315447 rs115325615 A T 591.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.499;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=5.243;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.22;ReadPosRankSum=2.360;SB=-3.530e+02;SOR=0.263;VQSLOD=6.84;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:48,24:72:99:620,0,1274 2 209315448 rs114260685 G T 543.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.502;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=5.330;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.45;ReadPosRankSum=2.000;SB=-3.380e+02;SOR=0.229;VQSLOD=6.91;culprit=QD GT:AD:DP:GQ:PL 0/1:48,25:73:99:572,0,1271 2 209315573 rs1370371 G A 1547.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.873;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=4.980;HaplotypeScore=3.5145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=-0.617;SB=-7.400e+02;SOR=1.069;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 0/1:44,59:103:99:1576,0,1081 2 209345944 rs34570534 CT C 63.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=-0.431;POSITIVE_TRAIN_SITE;QD=7.08;RPA=17,16;RU=T;ReadPosRankSum=1.242;SB=-2.677e+01;SOR=0.446;STR;VQSLOD=3.09;culprit=QD GT:AD:DP:GQ:PL 0/1:3,6:19:49:101,0,49 2 209353607 rs6726003 A G 222.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.623;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=0.309;SB=-1.765e+00;SOR=1.828;VQSLOD=8.33;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:251,0,197 2 209353656 rs11335842 GT G 333.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.77;RPA=10,9;RU=T;ReadPosRankSum=0.556;SB=-6.400e+01;SOR=0.941;STR;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:14,17:32:99:371,0,323 2 209353800 rs16841294 A G 1236.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.807;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=1.654;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=0.425;SB=-7.840e+02;SOR=0.641;VQSLOD=8.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,48:96:99:1265,0,1170 2 209357870 rs6717082 G A 363.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.764;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=0.128;SB=-2.203e+01;SOR=0.713;VQSLOD=10.11;culprit=FS GT:AD:DP:GQ:PL 0/1:19,14:33:99:392,0,518 2 209358027 rs3820900 C T 2729.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-1.654e+03;SOR=0.761;VQSLOD=5.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:90:99:2758,205,0 2 210010136 rs5017675 T C 348.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.71;SB=-7.497e+01;SOR=2.494;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:377,27,0 2 210044484 rs10198749 G T 632.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SB=-4.320e+02;SOR=0.859;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:48:661,48,0 2 210044610 rs6753340 C G 372.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.06;SB=-1.881e+02;SOR=1.022;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:401,30,0 2 210045748 rs1837432 C T 469.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-2.550e+02;SOR=0.693;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:498,39,0 2 210046561 rs10181524 A C 430.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.363;HaplotypeScore=3.1930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-1.037;SB=-1.450e+02;SOR=1.179;VQSLOD=7.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,17:37:99:459,0,469 2 210517785 rs2254169 C T 361.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.89;SB=0.00;SOR=4.977;VQSLOD=8.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:390,30,0 2 210561820 . A AT 388.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;DP=58;ExcessHet=3.0103;FS=1.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.33;RPA=10,11;RU=T;ReadPosRankSum=-0.118;SB=-1.190e+02;SOR=0.432;STR;VQSLOD=7.65;culprit=QD GT:AD:DP:GQ:PL 0/1:32,21:58:99:426,0,675 2 210594540 rs4673486 A G 2380.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.01;SB=-1.322e+03;SOR=1.101;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2409,175,0 2 210594717 . C CT 965.73 PASS AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;RPA=5,6;RU=T;SB=-3.670e+02;SOR=1.402;STR;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:37:93:1003,93,0 2 210594768 rs7594601 T C 1270.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.87;SB=-6.340e+02;SOR=0.749;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:96:1299,96,0 2 210642473 rs10932308 A T 214.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.90;ReadPosRankSum=0.089;SB=-3.300e+01;SOR=1.609;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:89:243,0,89 2 210659434 rs7603924 A G 63.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.80;ReadPosRankSum=-1.501;SB=-5.600e+01;SOR=0.495;VQSLOD=8.82;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:92:92,0,217 2 210674052 rs71420773 C T 149.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=-0.525;SB=-7.100e+01;SOR=0.368;VQSLOD=9.80;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:178,0,136 2 210704200 rs9288414 C A 458.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.457;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=0.850;SB=-1.330e+02;SOR=0.616;VQSLOD=10.22;culprit=FS GT:AD:DP:GQ:PL 0/1:15,18:33:99:487,0,425 2 210705348 rs10178675 C G 901.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.560;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.939;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=0.632;SB=-4.510e+02;SOR=0.948;VQSLOD=8.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,34:68:99:930,0,902 2 210714162 rs2191906 A G 640.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.997;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=1.127;SB=-3.150e+02;SOR=0.942;VQSLOD=7.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,26:62:99:669,0,922 2 210737363 rs16843880 T A 353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.943;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.251;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=1.385;SB=-9.301e+01;SOR=0.193;VQSLOD=9.08;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,14:27:99:382,0,417 2 210745681 rs2370838 C A 2258.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.22;SB=-8.200e+02;SOR=1.751;VQSLOD=7.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2287,172,0 2 210745855 rs17748818 C T 1793.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=1.336;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-0.924;SB=-9.530e+02;SOR=0.864;VQSLOD=7.91;culprit=DP GT:AD:DP:GQ:PL 0/1:75,66:141:99:1822,0,1940 2 210786137 rs9288415 G A 1051.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.87;SB=-2.361e+02;SOR=2.448;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:81:1080,81,0 2 210843383 rs2075117 G A 1737.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.846;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=1.373;HaplotypeScore=1.6647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=0.428;SB=-7.630e+02;SOR=0.906;VQSLOD=7.16;culprit=DP GT:AD:DP:GQ:PL 0/1:75,73:148:99:1766,0,2144 2 210846867 rs2723222 A G 872.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.863;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=-0.455;SB=-2.910e+02;SOR=0.588;VQSLOD=9.92;culprit=FS GT:AD:DP:GQ:PL 0/1:23,31:54:99:901,0,579 2 210849283 rs10804178 T C 465.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.522;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=1.222;SB=0.00;SOR=1.136;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:10,15:25:99:494,0,306 2 210856601 rs13017752 T G 428.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-0.741;SB=-1.900e+02;SOR=0.469;VQSLOD=9.76;culprit=FS GT:AD:DP:GQ:PL 0/1:15,18:33:99:457,0,349 2 210856658 rs7589926 G A 568.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.441;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=4.243;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=0.971;SB=-1.520e+02;SOR=1.421;VQSLOD=7.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,22:55:99:597,0,892 2 210880893 rs7570090 C T 123.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.42;ReadPosRankSum=-0.372;SB=-4.200e+01;SOR=1.473;VQSLOD=5.17;culprit=QD GT:AD:DP:GQ:PL 0/1:21,7:28:99:152,0,511 2 210889759 rs6435550 A G 278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.159;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=-0.146;SB=-3.500e+01;SOR=1.112;VQSLOD=10.05;culprit=FS GT:AD:DP:GQ:PL 0/1:7,10:17:99:307,0,199 2 210896097 rs13009890 T A 732.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.163;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=0.101;SB=-2.380e+02;SOR=0.871;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:18,28:46:99:761,0,467 2 211059792 rs35516848 A AT 488.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;DB;DP=43;ExcessHet=3.0103;FS=2.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.37;RPA=9,10;RU=T;ReadPosRankSum=-0.583;SB=-7.914e+01;SOR=0.204;STR;VQSLOD=9.05;culprit=SOR GT:AD:DP:GQ:PL 0/1:21,22:43:99:526,0,441 2 211069438 rs263677 G A 2279.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.40;SB=-8.020e+02;SOR=1.874;VQSLOD=4.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:76:99:2308,172,0 2 211082924 rs10572520 CTTAAT C 613.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=2.203;SB=-7.300e+01;SOR=0.693;VQSLOD=9.08;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,9:19:99:651,0,556 2 211158855 rs71350737 T C 570.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.529;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=0.643;SB=-6.800e+01;SOR=1.096;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:19,19:38:99:599,0,529 2 211162998 rs7592060 G A 140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.849;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.27;ReadPosRankSum=0.749;SB=0.00;SOR=0.321;VQSLOD=8.94;culprit=QD GT:AD:DP:GQ:PL 0/1:26,7:33:99:169,0,878 2 211168202 rs13025700 A G 820.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.639;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=3.086;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=-0.664;SB=-3.280e+02;SOR=0.307;VQSLOD=10.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,29:45:99:849,0,454 2 211168346 rs12469767 A C 1401.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.524;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.709;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=-0.664;SB=-7.930e+02;SOR=0.620;VQSLOD=9.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,49:109:99:1430,0,1551 2 211179952 rs115325195 A T 56.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.68;ReadPosRankSum=0.105;SB=-1.765e+00;SOR=0.836;VQSLOD=8.99;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:85:85,0,206 2 211319824 rs2287432 T C 768.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-0.418;SB=-2.940e+02;SOR=0.667;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:41,29:70:99:797,0,1046 2 211320041 rs10691255 G GAA 735.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQ0=0;MQRankSum=1.171;POSITIVE_TRAIN_SITE;QD=16.72;RPA=12,14;RU=A;ReadPosRankSum=-0.751;SB=-2.040e+02;SOR=0.824;STR;VQSLOD=3.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,29:51:99:773,0,379 2 211341156 rs2287418 C G 401.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQ0=0;MQRankSum=-1.052;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=-0.497;SB=-4.376e+01;SOR=0.299;VQSLOD=3.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,13:23:99:430,0,333 2 211342502 rs17552879 G A 1019.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.001;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=7.454;HaplotypeScore=4.4090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=1.302;SB=-3.890e+02;SOR=1.639;VQSLOD=5.12;culprit=FS GT:AD:DP:GQ:PL 0/1:46,43:89:99:1048,0,1096 2 211421452 rs34778124 A ATCT 1524.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=1.070;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=1.082;SB=-5.490e+02;SOR=0.730;VQSLOD=3.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,28:58:99:1562,0,1709 2 211456637 rs1047883 A G 721.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.93;ReadPosRankSum=1.181;SB=-3.830e+02;SOR=0.756;VQSLOD=7.35;culprit=QD GT:AD:DP:GQ:PL 0/1:60,31:91:99:750,0,1416 2 211456639 rs2229589 C T 742.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.16;ReadPosRankSum=1.143;SB=-4.490e+02;SOR=0.756;VQSLOD=7.39;culprit=QD GT:AD:DP:GQ:PL 0/1:60,31:91:99:771,0,1307 2 211481257 rs2287599 C G 1097.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.718;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=0.353;SB=-7.050e+02;SOR=0.794;VQSLOD=7.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,48:108:99:1126,0,1581 2 211503736 rs2302908 C T 113.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.198;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.75;ReadPosRankSum=-1.221;SB=0.00;SOR=0.368;VQSLOD=9.43;culprit=QD GT:AD:DP:GQ:PL 0/1:8,5:13:99:142,0,273 2 211504065 rs13409110 G A 628.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.446;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=2.409;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=59.05;MQ0=0;MQRankSum=-1.243;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=0.127;SB=-3.100e+01;SOR=1.609;VQSLOD=0.105;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,20:36:99:657,0,466 2 211504074 rs13408918 C T 573.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.387;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=58.93;MQ0=0;MQRankSum=-1.143;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=-0.326;SB=-3.300e+01;SOR=1.143;VQSLOD=3.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,19:32:99:602,0,347 2 211513118 rs4673540 C T 1661.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-3.910e+02;SOR=2.540;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1690,126,0 2 211515058 rs3213784 A T 1283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=3.375;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=0.329;SB=-6.990e+02;SOR=1.022;VQSLOD=7.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,54:116:99:1312,0,1607 2 211521227 rs58225253 CT C 269.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;DB;DP=28;ExcessHet=3.0103;FS=8.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.63;RPA=15,14;RU=T;ReadPosRankSum=0.246;SB=-1.361e+02;SOR=0.039;STR;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 0/1:9,19:28:99:307,0,157 2 211525420 rs41272671 A G 621.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=2.409;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.27;ReadPosRankSum=0.542;SB=-3.200e+01;SOR=1.609;VQSLOD=5.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,20:36:99:650,0,486 2 211527827 rs5838215 GT G 1531.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.388;DB;DP=66;ExcessHet=3.0103;FS=2.635;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;MQRankSum=0.317;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=23.57;RPA=12,11;RU=T;ReadPosRankSum=1.121;SB=-5.690e+02;SOR=0.315;STR;VQSLOD=0.397;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:2,63:66:99:1569,148,0 2 211533070 rs10932347 A G 1530.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.258;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-1.162;SB=-8.970e+02;SOR=0.691;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:56,58:114:99:1559,0,1406 2 211540507 rs1047891 C A 441.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.114;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.328;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.75;ReadPosRankSum=-0.894;SB=-3.180e+02;SOR=0.382;VQSLOD=9.46;culprit=QD GT:AD:DP:GQ:PL 0/1:35,22:57:99:470,0,957 2 212252809 rs934607 G A 341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=5.221;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=-1.585;SB=-1.960e+02;SOR=0.208;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 0/1:25,13:38:99:370,0,768 2 212285103 rs2289086 T C 625.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.288;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=6.112;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=-0.011;SB=-1.540e+02;SOR=0.158;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:24,23:47:99:654,0,749 2 212286934 rs3791709 A T 376.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.181;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.5924;MLEAC=1;MLEAF=0.500;MQ=59.35;MQ0=0;MQRankSum=-1.160;POSITIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=1.582;SB=0.00;SOR=1.051;VQSLOD=3.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,14:24:99:405,0,311 2 212295590 . G GT 94.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQ0=0;MQRankSum=0.869;QD=7.29;RPA=3,4;RU=T;ReadPosRankSum=0.565;SB=0.00;SOR=0.368;STR;VQSLOD=1.47;culprit=QD GT:AD:DP:GQ:PL 0/1:8,5:13:99:132,0,242 2 212295875 rs6710946 C T 921.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-1.931e+02;SOR=2.910;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:950,72,0 2 212488870 rs33915617 G GC 481.73 PASS AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=0.00;SOR=4.977;VQSLOD=7.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:519,33,0 2 212543924 rs4673628 A G 421.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.243;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.908;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=-0.969;SB=-2.490e+02;SOR=0.309;VQSLOD=10.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,17:38:99:450,0,556 2 212544024 rs10169970 G A 257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.48;ReadPosRankSum=0.725;SB=-1.765e+00;SOR=3.056;VQSLOD=5.53;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:94:286,0,94 2 212812097 rs839541 T C 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.042;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=0.822;SB=0.00;SOR=0.859;VQSLOD=8.19;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:203,0,153 2 212989410 rs6723461 G C 634.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.353;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.373;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=-1.855;SB=-2.090e+02;SOR=0.450;VQSLOD=9.19;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:21,24:45:99:663,0,585 2 213886454 rs2291241 A T 515.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.809;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.26;ReadPosRankSum=0.794;SB=-3.250e+02;SOR=0.709;VQSLOD=8.18;culprit=QD GT:AD:DP:GQ:PL 0/1:45,26:71:99:544,0,1244 2 213886647 rs3830257 A ATTTTATCT 3671.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;DB;DP=99;ExcessHet=3.0103;FS=4.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;RPA=1,2;RU=TTTTATCT;ReadPosRankSum=0.798;SB=-9.160e+02;SOR=1.223;STR;VQSLOD=7.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,39:99:99:3709,0,5312 2 213914343 rs2165444 C T 1438.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;SB=-3.890e+02;SOR=2.409;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1467,108,0 2 214012405 rs6738070 A C 3781.77 PASS AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.03;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-1.517e+03;SOR=1.733;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,118:118:99:3810,277,0 2 214228792 rs12469417 C T 849.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-1.603e+02;SOR=3.014;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:66:878,66,0 2 214228959 rs4146048 G A 1736.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.14;SB=-7.820e+02;SOR=0.976;VQSLOD=5.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1765,132,0 2 214233812 rs6752347 C A 590.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.13;SB=-3.940e+02;SOR=0.784;VQSLOD=4.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:45:619,45,0 2 214727150 rs2042790 T C 367.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.839;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.092;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=0.218;SB=-6.400e+01;SOR=1.371;VQSLOD=6.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,13:21:99:396,0,189 2 214727221 rs2042791 A C 723.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.900;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-0.647;SB=-1.970e+02;SOR=0.781;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:33,27:60:99:752,0,949 2 214727367 rs2042792 C G 1049.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.594;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.787;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=-0.219;SB=-4.640e+02;SOR=0.846;VQSLOD=7.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,40:102:99:1078,0,1614 2 215102884 rs9288491 T C 420.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=1.157;SB=-1.330e+02;SOR=0.813;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:19,17:36:99:449,0,491 2 215102929 rs1912207 T A 1466.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.34;SB=-8.120e+02;SOR=1.051;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:51:99:1495,108,0 2 215593261 . C CT 135.84 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.431;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.09;RPA=15,16;RU=T;ReadPosRankSum=0.765;SB=0.00;SOR=3.056;STR;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 1/1:1,8:10:16:173,16,0 2 215593851 rs2075623 G C 332.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=0.00;SOR=4.804;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:361,30,0 2 215595512 rs12614960 C T 312.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.077;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=0.608;SB=-4.076e+01;SOR=0.264;VQSLOD=9.96;culprit=FS GT:AD:DP:GQ:PL 0/1:9,11:20:99:341,0,309 2 215595645 rs16852600 C T 762.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.055;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=0.243;SB=-4.610e+02;SOR=0.756;VQSLOD=9.16;culprit=FS GT:AD:DP:GQ:PL 0/1:28,31:59:99:791,0,768 2 215595765 rs6435849 C G 1573.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.61;SB=-9.020e+02;SOR=0.970;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1602,114,0 2 215595872 rs28685662 G A 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.478;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.14;ReadPosRankSum=0.083;SB=-9.732e-01;SOR=1.284;VQSLOD=8.39;culprit=QD GT:AD:DP:GQ:PL 0/1:14,6:20:99:171,0,434 2 215610740 rs1838803 A T 51.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.71;ReadPosRankSum=-0.381;SB=0.00;SOR=0.180;VQSLOD=8.93;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:80:80,0,280 2 215632095 rs5031005 T G 319.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.443;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.84;ReadPosRankSum=2.194;SB=0.00;SOR=1.765;VQSLOD=8.81;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,10:14:99:348,0,101 2 215632155 rs5031009 T C 583.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.191;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=8.316;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQ0=0;MQRankSum=1.163;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=-0.011;SB=-5.200e+01;SOR=2.400;VQSLOD=0.390;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,20:45:99:612,0,668 2 215632192 rs5031011 G A 817.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=3.538;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.15;MQ0=0;MQRankSum=1.128;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=0.094;SB=-2.370e+02;SOR=1.274;VQSLOD=0.320;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,33:74:99:846,0,1031 2 215634055 rs6704780 C T 284.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.996;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=0.820;SB=-1.330e+02;SOR=0.525;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:17,12:29:99:313,0,373 2 215645135 rs3768707 A G 213.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=-0.056;SB=0.00;SOR=0.582;VQSLOD=10.34;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:242,0,242 2 215645177 rs141351703 GAAAGGTTA G 1804.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQ0=0;MQRankSum=1.156;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=0.939;SB=-2.180e+02;SOR=0.504;VQSLOD=3.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,18:40:99:1842,0,2412 2 215645464 rs2229571 C G 1826.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.847;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=2.343;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=1.687;SB=-7.580e+02;SOR=0.978;VQSLOD=7.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,66:127:99:1855,0,1831 2 215645502 rs28997575 GTGGTGAAGAACATTCAGGCAA G 7363.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;DB;DP=104;ExcessHet=3.0103;FS=5.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.82;ReadPosRankSum=2.104;SB=-3.445e+03;SOR=0.551;VQSLOD=3.45;culprit=FS GT:AD:DP:GQ:PL 0/1:57,32:104:99:7401,0,12864 2 215657182 . TA T 427.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.02;RPA=16,15;RU=A;ReadPosRankSum=-0.009;SB=-1.170e+02;SOR=0.699;STR;VQSLOD=6.03;culprit=QD GT:AD:DP:GQ:PL 0/1:37,34:83:99:465,0,705 2 215661680 rs11891694 G C 260.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.06;ReadPosRankSum=-0.140;SB=0.00;SOR=1.179;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:289,0,166 2 215661710 rs10498023 T C 396.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.084;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=5.226;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.53;ReadPosRankSum=0.811;SB=-2.901e+01;SOR=2.235;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 0/1:11,13:24:99:425,0,267 2 215674090 rs35933323 T G 1128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.881;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.783;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=-0.510;SB=-6.780e+02;SOR=0.579;VQSLOD=9.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,50:96:99:1157,0,1177 2 215674224 rs1048108 G A 708.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.189;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.255;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-0.158;SB=-3.530e+02;SOR=0.426;VQSLOD=9.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,31:63:99:737,0,904 2 215674323 rs1129804 C G 196.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.631;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=-0.733;SB=-6.200e+01;SOR=0.986;VQSLOD=8.93;culprit=FS GT:AD:DP:GQ:PL 0/1:12,8:20:99:225,0,366 2 215674341 rs17489363 A G 141.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.34;ReadPosRankSum=0.098;SB=-6.500e+01;SOR=1.112;VQSLOD=9.08;culprit=QD GT:AD:DP:GQ:PL 0/1:10,7:18:99:170,0,248 2 215674371 rs34732883 C T 100.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.16;ReadPosRankSum=0.349;SB=-6.000e+01;SOR=0.495;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:129,0,145 2 215711848 rs35044385 A G 553.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.560;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=3.396;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=59.97;MQ0=0;MQRankSum=1.174;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=-0.287;SB=-1.760e+02;SOR=2.093;VQSLOD=0.125;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,20:36:99:582,0,367 2 215797332 rs17426207 C T 1166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.376;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=2.974;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-0.585;SB=-5.360e+02;SOR=0.389;VQSLOD=9.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,46:95:99:1195,0,1353 2 215797527 rs10532785 AATTC A 439.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQ0=0;MQRankSum=1.373;POSITIVE_TRAIN_SITE;QD=15.70;RPA=2,1;RU=ATTC;ReadPosRankSum=-0.218;SB=-5.300e+01;SOR=0.321;STR;VQSLOD=3.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,8:27:99:477,0,837 2 215798724 rs943295 A C 168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.455;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=1.610;SB=0.00;SOR=0.293;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 0/1:11,6:17:99:197,0,325 2 215802112 rs3738884 G A 338.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.214;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=-0.431;SB=0.00;SOR=0.616;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:12,11:23:99:367,0,364 2 215807888 rs11679293 G T 247.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.65;ReadPosRankSum=-0.094;SB=0.00;SOR=1.445;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:99:276,0,120 2 215812297 rs2274412 G A 1297.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.008;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=1.582;HaplotypeScore=6.1235;MLEAC=1;MLEAF=0.500;MQ=60.09;MQ0=0;MQRankSum=-0.828;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=0.713;SB=-4.600e+02;SOR=0.889;VQSLOD=0.229;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:70,50:121:99:1326,0,2025 2 215820013 rs10498027 G A 179.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=4.196;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.20;ReadPosRankSum=-0.269;SB=-1.611e+01;SOR=1.714;VQSLOD=5.68;culprit=QD GT:AD:DP:GQ:PL 0/1:21,8:29:99:208,0,615 2 215821580 rs17492577 T C 128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.20;ReadPosRankSum=-0.709;SB=0.00;SOR=0.307;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:9,5:14:99:157,0,317 2 215833415 rs4673925 A G 769.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.245;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=2.151;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=-0.258;SB=-2.530e+02;SOR=1.095;VQSLOD=7.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,30:73:99:798,0,1066 2 215833622 rs6756540 G T 564.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=2.974;SB=-6.800e+01;SOR=1.179;VQSLOD=9.04;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:13,19:32:99:593,0,354 2 215840414 rs17493319 C A 175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.850;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.79;ReadPosRankSum=-1.349;SB=0.00;SOR=0.283;VQSLOD=9.90;culprit=QD GT:AD:DP:GQ:PL 0/1:13,7:20:99:204,0,459 2 215840829 rs7594021 A G 105.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.881;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.81;ReadPosRankSum=-0.409;SB=-9.732e-01;SOR=1.721;VQSLOD=5.94;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:99:134,0,211 2 215848034 rs7608150 T C 1064.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.35;SB=-2.411e+02;SOR=2.376;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:78:1093,78,0 2 215851246 rs7559069 A G 913.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.18;SB=-7.797e+01;SOR=4.174;VQSLOD=4.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:69:942,69,0 2 215862383 rs1980844 G A 578.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.15;SB=-1.633e+02;SOR=2.303;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:607,45,0 2 215862633 rs1326748 C G 401.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=-3.876e+01;SOR=3.442;VQSLOD=7.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:12:33:430,33,0 2 215865575 rs10498030 T C 6824.77 PASS AC=2;AF=1.00;AN=2;DB;DP=229;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6984;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=-3.888e+03;SOR=0.822;VQSLOD=5.34;culprit=DP GT:AD:DP:GQ:PL 1/1:0,228:229:99:6853,509,0 2 215872334 rs940279 G A 2773.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.51;SB=-1.482e+03;SOR=1.203;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:2802,208,0 2 215874965 rs6733264 G T 850.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.95;SB=0.00;SOR=6.358;VQSLOD=7.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:879,69,0 2 215875251 rs1409607 A T 1048.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.96;SB=-8.197e+01;SOR=4.548;VQSLOD=5.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:84:1077,84,0 2 215876166 rs7560008 A T 1453.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.61;SB=-3.377e+01;SOR=6.091;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1482,120,0 2 215876589 . G GT 610.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.614;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.51;RPA=13,14;RU=T;ReadPosRankSum=0.784;SB=-4.379e+01;SOR=1.402;STR;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 1/1:3,30:35:20:648,20,0 2 215878240 rs7594353 G A 1845.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-1.118e+03;SOR=0.726;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1874,141,0 2 215878246 rs10192100 C T 1785.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.79;SB=-1.105e+03;SOR=0.762;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1814,135,0 2 215880108 rs6753310 C T 511.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.99;SB=0.00;SOR=5.421;VQSLOD=7.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:540,42,0 2 215882529 rs6435868 G A 351.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.97;SB=0.00;SOR=4.804;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:380,30,0 2 215890312 rs2177423 A G 542.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.92;SB=0.00;SOR=4.174;VQSLOD=7.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:45:571,45,0 2 215890324 . G GT 528.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.744;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.99;RPA=10,11;RU=T;ReadPosRankSum=-0.529;SB=-4.397e+01;SOR=2.584;STR;VQSLOD=6.29;culprit=FS GT:AD:DP:GQ:PL 1/1:1,22:23:56:566,56,0 2 215890352 rs5838480 GTT G 1140.73 PASS AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.57;RPA=11,9;RU=T;SB=-2.500e+02;SOR=2.517;STR;VQSLOD=5.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:34:99:1178,99,0 2 215928677 rs12694351 G C 1356.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.79;SB=-1.613e+02;SOR=3.967;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1385,105,0 2 215928972 rs1523721 G C 2155.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;SB=-2.011e+02;SOR=4.370;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:2184,160,0 2 215929028 rs10707207 TA T 1068.73 PASS AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.23;RPA=2,1;RU=A;SB=0.00;SOR=6.518;STR;VQSLOD=7.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:75:1106,75,0 2 215929062 rs10186371 A G 418.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.62;SB=0.00;SOR=4.977;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:447,33,0 2 215976231 rs2948978 A T 475.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=0.00;SOR=5.283;VQSLOD=8.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:504,39,0 2 216176648 rs78631308 A G 354.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=-8.297e+01;SOR=2.670;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:383,30,0 2 216176807 rs4535042 T G 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=0.094;SB=-9.000e+01;SOR=0.941;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:201,0,310 2 216182769 rs4672766 A T 857.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=0.00;SOR=6.273;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:886,66,0 2 216182770 rs75285060 C T 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.298;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=-0.067;SB=0.00;SOR=0.412;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:13,9:22:99:241,0,464 2 216184482 rs16853782 A G 916.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=1.752;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=-0.343;SB=-5.680e+02;SOR=0.549;VQSLOD=9.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,39:89:99:945,0,1270 2 216189845 rs3772078 A G 132.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=0.132;SB=0.00;SOR=0.307;VQSLOD=10.12;culprit=FS GT:AD:DP:GQ:PL 0/1:9,5:14:99:161,0,278 2 216190020 rs2372536 C G 917.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=0.511;SB=-5.100e+02;SOR=0.811;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:31,33:65:99:946,0,713 2 216190691 rs2177737 A C 2291.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.21;SB=-5.850e+02;SOR=2.406;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2320,172,0 2 216191533 rs78562722 C T 569.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.692;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=8.098;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=0.835;SB=-1.941e+02;SOR=0.072;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 0/1:10,22:32:99:598,0,311 2 216191586 rs77239104 T G 1269.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.407;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=2.709;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=-0.006;SB=-3.260e+02;SOR=0.317;VQSLOD=9.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,41:71:99:1298,0,888 2 216197971 rs12995526 T C 610.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.25;SB=0.00;SOR=5.670;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:639,48,0 2 216199525 rs12466139 T C 244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.101;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=-2.375;SB=0.00;SOR=0.593;VQSLOD=9.18;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,8:17:99:273,0,300 2 216199551 rs10932608 T A 404.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.872;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=-2.547;SB=-7.597e+01;SOR=0.123;VQSLOD=8.46;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:11,14:25:99:433,0,340 2 216200907 rs13002576 C G 956.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.86;SB=-3.230e+02;SOR=1.839;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:72:985,72,0 2 216209472 rs13010249 A G 827.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.797;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-0.329;SB=-2.330e+02;SOR=0.862;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:32,32:64:99:856,0,846 2 216211712 rs10932609 A T 2998.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-8.870e+02;SOR=2.204;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:3027,229,0 2 216212089 rs4673991 C T 306.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.445;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=1.453;SB=0.00;SOR=0.540;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 0/1:12,10:22:99:335,0,387 2 216212279 rs4673992 G C 2653.77 PASS AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7884;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.54;SB=-1.537e+03;SOR=1.006;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:93:99:2682,196,0 2 216212339 rs4673993 T C 872.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.617;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.952;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.038;SB=-4.330e+02;SOR=0.542;VQSLOD=9.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,33:67:99:901,0,848 2 216214124 rs4672768 G A 132.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=7.471;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.77;ReadPosRankSum=0.911;SB=-9.515e+00;SOR=2.283;VQSLOD=5.80;culprit=QD GT:AD:DP:GQ:PL 0/1:17,6:23:99:161,0,615 2 216214492 rs10498036 T G 448.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.493;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=0.965;SB=-1.070e+02;SOR=0.569;VQSLOD=10.03;culprit=FS GT:AD:DP:GQ:PL 0/1:13,16:29:99:477,0,219 2 216229692 rs11651 A G 784.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.973;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.014;SB=-4.640e+02;SOR=0.957;VQSLOD=8.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,32:62:99:813,0,845 2 216230533 rs2372540 T A 285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.81;ReadPosRankSum=0.000;SB=0.00;SOR=1.981;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 0/1:3,9:12:80:314,0,80 2 216235089 rs1250209 C T 5430.77 PASS AC=2;AF=1.00;AN=2;DB;DP=181;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.00;SB=-3.101e+03;SOR=0.821;VQSLOD=6.15;culprit=DP GT:AD:DP:GQ:PL 1/1:0,181:181:99:5459,403,0 2 216235388 rs1313044 A G 147.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.174;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=-0.555;SB=-2.601e+01;SOR=1.179;VQSLOD=8.25;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:176,0,201 2 216236532 rs10804241 G A 1535.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.00;SB=-6.370e+02;SOR=1.562;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1564,114,0 2 216237929 rs2289199 A T 482.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.81;SB=0.00;SOR=5.283;VQSLOD=7.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:511,39,0 2 216240126 rs3214672 AAC A 1884.73 PASS AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.75;SB=-5.510e+02;SOR=1.880;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:49:99:1922,135,0 2 216242917 rs1132741 T A 2476.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.35;SB=-1.037e+03;SOR=1.358;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2505,187,0 2 216243832 rs1250204 T C 2318.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=-8.050e+02;SOR=1.874;VQSLOD=8.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2347,172,0 2 216245392 rs3732355 C T 533.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.03;SB=-3.976e+01;SOR=4.047;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:562,42,0 2 216248305 rs1250203 G T 978.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.96;SB=-8.197e+01;SOR=4.407;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:78:1007,78,0 2 216248707 rs35639338 TAA T 1754.73 PASS AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.71;RPA=4,2;RU=A;SB=-4.940e+02;SOR=1.885;STR;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:99:1792,105,0 2 216249587 rs13652 C T 1560.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.38;SB=-9.410e+02;SOR=0.970;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1589,114,0 2 216251697 rs35343655 G A 1256.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.22;SB=-2.600e+02;SOR=2.613;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:96:1285,96,0 2 216252756 rs2888354 T C 495.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.39;SB=0.00;SOR=5.283;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:524,39,0 2 216256615 rs6709607 T C 881.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.410;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.66;ReadPosRankSum=1.607;SB=-8.197e+01;SOR=2.910;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:1,26:27:38:910,38,0 2 216262621 rs6725958 A C 3683.77 PASS AC=2;AF=1.00;AN=2;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=-1.803e+03;SOR=1.290;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,116:116:99:3712,271,0 2 216262788 rs2577297 A G 1020.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;SB=-3.290e+02;SOR=1.751;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:75:1049,75,0 2 216263926 rs2692224 C A 1681.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.50;SB=-6.800e+02;SOR=1.692;VQSLOD=3.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1710,123,0 2 216263938 . C CT 2728.73 PASS AC=2;AF=1.00;AN=2;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.36;RPA=1,2;RU=T;SB=-9.780e+02;SOR=1.460;STR;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:62:99:2766,181,0 2 216269031 rs7575551 G T 1516.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.597;DB;DP=53;Dels=0.04;ExcessHet=3.0103;FS=14.071;HaplotypeScore=10.6981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;QD=29.74;ReadPosRankSum=2.784;SB=-1.420e+02;SOR=4.400;VQSLOD=1.33;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 1/1:3,48:51:77:1545,77,0 2 216272819 rs7570208 C G 565.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-1.553e+02;SOR=2.303;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:42:594,42,0 2 216272900 rs2577301 T G 1631.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-6.250e+02;SOR=1.697;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1660,123,0 2 216272907 rs7596677 A T 1783.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-7.530e+02;SOR=1.649;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1812,138,0 2 216274853 rs5838511 AAC A 2103.73 PASS AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.88;RPA=11,10;RU=AC;SB=-6.540e+02;SOR=1.791;STR;VQSLOD=5.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:69:99:2141,159,0 2 216283958 rs3796123 T A 2993.77 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.51;SB=-2.015e+03;SOR=0.751;VQSLOD=5.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:105:99:3022,217,0 2 216287093 rs1250248 A G 532.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=0.00;SOR=5.421;VQSLOD=8.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:561,42,0 2 216290147 rs2577289 T A 880.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.36;SB=-2.750e+02;SOR=2.303;VQSLOD=4.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:69:909,69,0 2 216295312 rs1250241 T A 402.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.72;SB=0.00;SOR=4.977;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:431,33,0 2 216299550 rs2577290 G A 1788.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.85;SB=-7.420e+02;SOR=1.536;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1817,132,0 2 216299551 rs2692234 C A 1761.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.36;SB=-7.870e+02;SOR=1.571;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1790,129,0 2 216299571 rs34196672 T TTAC 2930.73 PASS AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.37;RPA=1,2;RU=TAC;SB=-7.570e+02;SOR=2.160;STR;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:49:99:2968,141,0 2 216299629 rs1250247 C G 571.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.22;SB=-4.376e+01;SOR=4.047;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:600,45,0 2 216300185 rs1250258 C T 1188.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.96;SB=-1.593e+02;SOR=3.737;VQSLOD=7.48;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,35:35:93:1217,93,0 2 216300482 rs1250259 T A 1296.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.63;SB=-3.940e+02;SOR=2.038;VQSLOD=3.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:96:1325,96,0 2 216808152 rs6435927 C A 949.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.639;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=0.120;SB=-4.840e+02;SOR=0.596;VQSLOD=8.95;culprit=FS GT:AD:DP:GQ:PL 0/1:25,35:60:99:978,0,628 2 216810612 rs74371935 C T 366.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.943;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=-1.415;SB=-1.765e+00;SOR=1.493;VQSLOD=8.97;culprit=FS GT:AD:DP:GQ:PL 0/1:14,12:26:99:395,0,465 2 216811707 rs1344695 G T 186.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=0.563;SB=-5.700e+01;SOR=0.569;VQSLOD=10.19;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:215,0,194 2 216878008 rs1864253 C G 566.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-0.505;SB=-2.350e+02;SOR=0.836;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:21,23:44:99:595,0,508 2 216903894 rs10197542 A C 951.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.586;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.445;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=-0.846;SB=-3.980e+02;SOR=0.394;VQSLOD=9.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,35:61:99:980,0,684 2 216904019 rs9288513 A T 1628.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.656;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=-2.009;SB=-1.029e+03;SOR=0.787;VQSLOD=7.48;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:62,65:127:99:1657,0,1584 2 216904399 rs10498052 C T 177.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=0.352;SB=0.00;SOR=0.859;VQSLOD=10.44;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:206,0,149 2 216908910 rs1991533 T C 312.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.153;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.218;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=0.141;SB=-1.850e+02;SOR=0.180;VQSLOD=9.64;culprit=SOR GT:AD:DP:GQ:PL 0/1:6,12:18:99:341,0,162 2 216908923 rs2163015 C G 278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.240;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.42;ReadPosRankSum=-0.606;SB=-1.330e+02;SOR=0.593;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:4,12:16:95:307,0,95 2 216923679 rs1429148 C T 1190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.509;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=5.054;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.458;SB=-6.410e+02;SOR=0.901;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 0/1:48,49:97:99:1219,0,1174 2 216974290 rs41296894 A G 1019.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.327;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.057;HaplotypeScore=1.6120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=-1.300;SB=-4.860e+02;SOR=0.430;VQSLOD=9.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,39:74:99:1048,0,924 2 216981186 rs705649 G A 128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.044;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=-1.047;SB=-3.500e+01;SOR=0.551;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:157,0,217 2 216992093 rs4503989 T C 1282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.080;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=1.190;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=0.643;SB=-5.080e+02;SOR=0.446;VQSLOD=9.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,49:68:99:1311,0,454 2 217003152 rs2303400 T C 254.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.951;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=1.678;SB=0.00;SOR=0.693;VQSLOD=10.00;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:283,0,259 2 217012901 rs207906 A G 1470.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.29;SB=-8.020e+02;SOR=0.823;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1499,111,0 2 217024697 rs58550995 CT C 62.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.69;RPA=12,11;RU=T;ReadPosRankSum=-1.807;SB=-6.206e+00;SOR=0.399;STR;VQSLOD=8.92;culprit=QD GT:AD:DP:GQ:PL 0/1:10,7:17:99:100,0,220 2 217055171 rs12470053 A G 620.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.233;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.400;SB=-1.730e+02;SOR=0.598;VQSLOD=10.01;culprit=FS GT:AD:DP:GQ:PL 0/1:16,23:39:99:649,0,461 2 217069151 rs1438162 A G 973.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.842;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.977;HaplotypeScore=1.8737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=1.116;SB=-3.440e+02;SOR=0.921;VQSLOD=7.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,35:71:99:1002,0,878 2 217081526 rs34282516 C G 874.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.121;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=1.372;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=-0.154;SB=-2.140e+02;SOR=1.112;VQSLOD=6.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,30:49:99:903,0,496 2 217081557 rs207896 T C 748.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.172;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=-0.532;SB=-3.510e+02;SOR=0.664;VQSLOD=8.80;culprit=FS GT:AD:DP:GQ:PL 0/1:39,32:71:99:777,0,1052 2 217082026 rs207897 C T 136.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-0.263;SB=0.00;SOR=0.551;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:165,0,216 2 217123958 rs169616 T C 508.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.435;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=5.507;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-0.266;SB=-2.657e-01;SOR=2.494;VQSLOD=5.52;culprit=FS GT:AD:DP:GQ:PL 0/1:30,17:47:99:537,0,1029 2 217280261 rs5838583 GT G 348.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.874;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.62;RPA=15,14;RU=T;ReadPosRankSum=1.338;SB=-7.517e+01;SOR=0.643;STR;VQSLOD=9.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,22:38:99:386,0,123 2 217281150 rs3214962 AC A 1466.73 PASS AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.11;RPA=8,7;RU=C;SB=-1.065e+02;SOR=4.664;STR;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:51:99:1504,129,0 2 217297350 rs2271334 G A 226.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.998;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.056;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=0.000;SB=-9.732e-01;SOR=1.949;VQSLOD=6.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,8:20:99:255,0,382 2 217311609 rs2738284 G A 298.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.183;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.007;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=-0.116;SB=-9.300e+01;SOR=0.275;VQSLOD=9.80;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,11:24:99:327,0,455 2 217311630 rs284550 G T 565.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.329;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=-1.710;SB=-3.300e+01;SOR=1.358;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:10,17:27:99:594,0,247 2 217315664 rs2066526 C T 1399.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=6.153;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=-0.033;SB=-3.110e+02;SOR=1.499;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 0/1:44,44:88:99:1428,0,1237 2 217329184 rs2129119 T C 427.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.862;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.189;SB=-1.400e+02;SOR=0.990;VQSLOD=10.26;culprit=FS GT:AD:DP:GQ:PL 0/1:16,16:32:99:456,0,406 2 217342000 rs284523 T C 1462.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.578;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=3.286;HaplotypeScore=4.2917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=-0.053;SB=-6.900e+02;SOR=1.038;VQSLOD=7.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:71,56:127:99:1491,0,1818 2 217342063 rs205980 A G 923.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=1.870;HaplotypeScore=4.5049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=0.128;SB=-3.570e+02;SOR=1.087;VQSLOD=7.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,36:90:99:952,0,1417 2 217342773 rs284524 T G 886.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.901;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.269;HaplotypeScore=3.6932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=1.000;SB=-2.400e+02;SOR=1.085;VQSLOD=6.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,30:51:99:915,0,495 2 217343136 . G GC 206.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;RPA=2,3;RU=C;ReadPosRankSum=1.737;SB=-1.764e+00;SOR=1.609;STR;VQSLOD=8.40;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:16:99:244,0,287 2 217364539 rs284572 C T 682.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.349;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=0.812;SB=-3.470e+02;SOR=1.302;VQSLOD=6.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,27:41:99:711,0,366 2 217524635 rs9341197 A T 267.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.469;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=-0.723;SB=0.00;SOR=0.941;VQSLOD=9.91;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:296,0,233 2 217525243 rs9341201 T C 439.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.645;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=4.957;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=0.549;SB=-2.580e+02;SOR=0.236;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:17,20:37:99:468,0,456 2 217526514 rs3732018 C G 123.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.485;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.88;ReadPosRankSum=0.235;SB=-4.176e+01;SOR=0.052;VQSLOD=8.72;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:152,0,441 2 217526521 rs9341206 C T 367.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.43;ReadPosRankSum=0.094;SB=-1.765e+00;SOR=2.985;VQSLOD=5.62;culprit=FS GT:AD:DP:GQ:PL 0/1:6,12:18:99:396,0,159 2 217528609 rs9341218 A G 686.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.446;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=5.513;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=-0.143;SB=-1.670e+02;SOR=1.863;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 0/1:16,26:42:99:715,0,346 2 217541426 rs11575205 C T 356.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=5.051;HaplotypeScore=1.9525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.30;ReadPosRankSum=1.249;SB=-1.765e+00;SOR=3.180;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 0/1:5,11:17:99:385,0,153 2 217541437 rs11575204 G A 357.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.482;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=1.9525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=0.660;SB=-1.766e+00;SOR=3.258;VQSLOD=5.52;culprit=FS GT:AD:DP:GQ:PL 0/1:6,14:20:99:386,0,178 2 217541582 rs2160549 T C 2153.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.26;SB=-1.511e+03;SOR=0.824;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2182,154,0 2 217543541 rs6746360 T C 179.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=0.780;SB=-6.503e+01;SOR=0.627;VQSLOD=9.05;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:208,0,132 2 217543633 rs11575195 G A 432.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.508;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=2.846;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-0.681;SB=-2.820e+02;SOR=0.360;VQSLOD=9.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,18:36:99:461,0,444 2 217736131 rs2241191 G A 350.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.297;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.799;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-0.334;SB=-6.100e+01;SOR=1.136;VQSLOD=7.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,13:26:99:379,0,382 2 218577575 rs1835333 T A 1049.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.86;SB=-1.623e+02;SOR=3.477;VQSLOD=5.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:81:1078,81,0 2 218577852 rs370988421 G C 690.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=4.572;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.34;ReadPosRankSum=-0.189;SB=-2.900e+02;SOR=0.250;VQSLOD=8.50;culprit=FS GT:AD:DP:GQ:PL 0/1:29,27:56:99:719,0,823 2 218604247 rs4672848 A C 764.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.41;SB=-2.780e+02;SOR=1.697;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:57:793,57,0 2 218604356 rs4294980 G A 909.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;SB=-3.830e+02;SOR=1.329;VQSLOD=6.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:69:938,69,0 2 218620552 rs2052928 C T 468.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-4.176e+01;SOR=3.767;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:497,39,0 2 218686624 . C T 1419.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.742;DP=101;Dels=0.00;ExcessHet=3.0103;FS=4.950;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.06;ReadPosRankSum=-0.163;SB=-8.580e+02;SOR=0.371;VQSLOD=7.87;culprit=FS GT:AD:DP:GQ:PL 0/1:47,54:101:99:1448,0,1194 2 218694510 rs55877504 CT C 1912.73 PASS AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.84;RPA=3,2;RU=T;SB=-7.170e+02;SOR=1.329;STR;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:49:99:1950,138,0 2 218694512 rs55694913 T G 1410.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.932;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=29.39;ReadPosRankSum=1.697;SB=-7.260e+02;SOR=0.484;VQSLOD=5.18;culprit=FS GT:AD:DP:GQ:PL 1/1:1,47:48:99:1439,111,0 2 218694691 rs10188605 A G 999.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.33;SB=-4.420e+02;SOR=1.329;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:75:1028,75,0 2 218695102 rs3796028 G A 1839.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.67;SB=-1.114e+03;SOR=0.826;VQSLOD=6.17;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,62:62:99:1868,138,0 2 218745685 rs10199795 G A 2470.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-1.137e+03;SOR=1.367;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2499,181,0 2 218746990 rs2303381 A T 899.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=0.038;SB=-5.380e+02;SOR=0.731;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:25,34:59:99:928,0,651 2 218747190 rs2303383 T C 255.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.782;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=0.113;SB=0.00;SOR=0.818;VQSLOD=10.35;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:284,0,217 2 218749626 rs2288165 T C 240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-0.302;SB=-3.500e+01;SOR=0.693;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:269,0,263 2 218750239 rs6714429 G A 242.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.440;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=-2.036;SB=-3.876e+01;SOR=0.275;VQSLOD=8.69;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,9:16:99:271,0,213 2 218750359 rs6714587 G A 833.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.326;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.68;ReadPosRankSum=-0.344;SB=-1.900e+02;SOR=0.646;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:21,29:50:99:862,0,597 2 218750377 rs12990490 C T 1059.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.063;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=-0.808;SB=-4.510e+02;SOR=0.477;VQSLOD=10.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,38:63:99:1088,0,734 2 218750453 . A AG 2111.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;DP=121;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.45;RPA=2,3;RU=G;ReadPosRankSum=1.914;SB=-1.008e+03;SOR=0.604;STR;VQSLOD=8.61;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:61,60:121:99:2149,0,2255 2 218750703 rs2288166 C T 655.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.099;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=-0.252;SB=-2.620e+02;SOR=0.536;VQSLOD=10.29;culprit=FS GT:AD:DP:GQ:PL 0/1:25,25:50:99:684,0,751 2 218750731 rs2288167 G C 704.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.557;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.046;HaplotypeScore=2.7605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=0.942;SB=-2.190e+02;SOR=0.990;VQSLOD=7.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,28:60:99:733,0,822 2 218750734 rs2288168 T A 732.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.081;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.022;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=1.848;SB=-2.880e+02;SOR=0.988;VQSLOD=6.97;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:34,29:63:99:761,0,826 2 218750817 rs10211238 T C 925.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=2.053;HaplotypeScore=1.8633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-0.195;SB=-5.840e+02;SOR=0.418;VQSLOD=10.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,37:67:99:954,0,697 2 218758123 rs58297965 G GCGCACA,GCA 6126.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.412;DB;DP=163;ExcessHet=3.0103;FS=2.119;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.86;MQ0=0;MQRankSum=0.827;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.47;ReadPosRankSum=-1.643;SB=-2.453e+03;SOR=0.871;VQSLOD=0.079;culprit=MQRankSum GT:AD:DP:GQ:PL 1/2:19,67,60:163:99:6164,1707,4935,2826,0,3056 2 218759674 rs2288169 G C 702.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.066;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=0.266;SB=-3.740e+02;SOR=0.575;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:46,30:76:99:731,0,1202 2 218768422 rs3791936 T G 1779.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.17;SB=-6.980e+02;SOR=1.903;VQSLOD=5.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1808,132,0 2 218770003 rs7600493 G A 2468.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-1.517e+03;SOR=0.821;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2497,184,0 2 218801767 rs4674232 C T 1066.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-4.860e+02;SOR=1.547;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:81:1095,81,0 2 218867737 rs74270368 C T 125.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.182;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=-2.429;SB=-1.765e+00;SOR=1.609;VQSLOD=7.59;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,6:13:99:154,0,216 2 218939630 rs10932744 C T 345.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.423;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=1.462;SB=-9.600e+01;SOR=0.871;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:18,13:31:99:374,0,534 2 219000234 . C T 2559.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;DP=220;Dels=0.00;ExcessHet=3.0103;FS=1.048;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.64;ReadPosRankSum=-0.819;SB=-1.612e+03;SOR=0.568;VQSLOD=5.42;culprit=DP GT:AD:DP:GQ:PL 0/1:113,107:220:99:2588,0,2964 2 219082119 rs2271541 G T 845.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.83;SB=-1.573e+02;SOR=3.014;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:66:874,66,0 2 219082330 rs12694432 A G 969.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-3.280e+02;SOR=2.019;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:72:998,72,0 2 219093278 rs60528331 A G 346.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.52;SB=-4.276e+01;SOR=3.442;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:375,30,0 2 219099260 rs1018288 G C 971.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.97;SB=-1.195e+02;SOR=3.611;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:72:1000,72,0 2 219099484 rs10932765 T C 1207.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-2.321e+02;SOR=3.026;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:90:1236,90,0 2 219103313 . CTTTT C,CT 1475.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.843;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.98;MQ0=0;MQRankSum=6.404;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.85;RPA=22,18,19;RU=T;ReadPosRankSum=1.423;SB=-2.340e+02;SOR=1.287;STR;VQSLOD=2.25;culprit=MQRankSum GT:AD:DP:GQ:PL 1/2:2,12,27:49:99:1513,603,638,231,0,142 2 219103580 rs10169718 A G 1578.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.32;SB=-2.710e+02;SOR=3.209;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1607,117,0 2 219104316 rs34974153 AT A 445.86 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.479;DB;DP=41;ExcessHet=3.0103;FS=2.908;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.93;RPA=16,15;RU=T;ReadPosRankSum=2.156;SB=-6.511e+01;SOR=1.981;STR;VQSLOD=3.97;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 1/1:5,27:41:2:481,2,0 2 219117482 rs35271699 G A 795.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.57;SB=0.00;SOR=6.184;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:824,63,0 2 219127468 rs201145373 C G 221.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.56;ReadPosRankSum=0.035;SB=-9.400e+01;SOR=0.941;VQSLOD=7.60;culprit=FS GT:AD:DP:GQ:PL 0/1:11,10:21:99:250,0,256 2 219128506 rs2292549 C T 2194.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-9.240e+02;SOR=1.675;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2223,163,0 2 219134950 rs13419763 C T 313.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.38;SB=0.00;SOR=4.804;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:342,27,0 2 219138940 rs4791 C T 947.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.57;SB=-4.980e+02;SOR=1.044;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:72:976,72,0 2 219139573 rs6734242 G A 912.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.74;SB=-3.976e+01;SOR=5.136;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:72:941,72,0 2 219141546 rs4674281 C T 547.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=0.00;SOR=5.549;VQSLOD=8.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:576,45,0 2 219142023 rs2168703 G A 905.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-2.640e+02;SOR=2.066;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:75:934,75,0 2 219142492 rs2168704 G A 1071.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.57;SB=-5.070e+02;SOR=1.044;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:87:1100,87,0 2 219142773 rs6707559 C T 1047.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.74;SB=-1.881e+02;SOR=2.765;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:81:1076,81,0 2 219144815 rs2045435 T C 1795.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.06;SB=-1.116e+03;SOR=0.693;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:1824,135,0 2 219146803 rs2292553 G A 556.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5971;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.84;SB=-2.990e+02;SOR=0.892;VQSLOD=5.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:45:585,45,0 2 219153983 rs10707182 GA G 720.73 PASS AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.86;RPA=2,1;RU=A;SB=-1.843e+02;SOR=2.179;STR;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:18:51:758,51,0 2 219206919 rs3816562 C T 455.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.918;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.744;SB=-1.560e+02;SOR=0.947;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:18,18:36:99:484,0,458 2 219209378 . G A 448.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.509;DP=25;Dels=0.00;ExcessHet=3.0103;FS=12.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.95;ReadPosRankSum=-0.416;SB=-1.961e+02;SOR=0.027;VQSLOD=3.04;culprit=FS GT:AD:DP:GQ:PL 0/1:10,15:25:99:477,0,333 2 219209393 rs1350336 A G 738.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-2.011e+02;SOR=2.093;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:57:767,57,0 2 219225162 rs4674296 T C 272.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.508;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.18;ReadPosRankSum=-0.803;SB=0.00;SOR=1.112;VQSLOD=9.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,9:15:99:301,0,191 2 219227756 rs6723716 T C 430.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-0.621;SB=-3.301e+01;SOR=0.582;VQSLOD=10.27;culprit=FS GT:AD:DP:GQ:PL 0/1:18,16:34:99:459,0,541 2 219231807 rs3845833 C T 2713.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.50;SB=-1.127e+03;SOR=1.796;VQSLOD=5.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,92:92:99:2742,208,0 2 219232354 rs7608923 C A 648.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=6.204;HaplotypeScore=1.9957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=-0.019;SB=-1.390e+02;SOR=1.651;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 0/1:30,22:53:99:677,0,764 2 219252208 rs3731863 C T 1332.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.481;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=2.631;HaplotypeScore=7.2979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=0.429;SB=-7.420e+02;SOR=0.419;VQSLOD=9.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,53:105:99:1361,0,1388 2 219252630 rs17221959 C T 776.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=1.897;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=-0.637;SB=-5.060e+02;SOR=0.827;VQSLOD=6.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,35:72:99:805,0,958 2 219254622 rs2695342 A G 4247.77 PASS AC=2;AF=1.00;AN=2;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.50;SB=-2.642e+03;SOR=0.749;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,144:144:99:4276,322,0 2 219257688 rs2045433 T C 1329.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.29;SB=-9.430e+02;SOR=0.735;VQSLOD=5.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:96:1358,96,0 2 219259270 rs2279015 G A 1308.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.08;SB=-2.850e+02;SOR=1.880;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1337,102,0 2 219263277 rs2695344 A G 783.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.96;SB=-4.076e+01;SOR=4.712;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:812,60,0 2 219265094 rs2579958 T C 424.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;SB=-2.391e+02;SOR=0.836;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:453,33,0 2 219265136 . T TC 589.73 PASS AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;RPA=1,2;RU=C;SB=-2.171e+02;SOR=1.329;STR;VQSLOD=5.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:627,42,0 2 219265168 rs3795982 T C 107.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.29;ReadPosRankSum=0.904;SB=-7.000e+01;SOR=0.527;VQSLOD=9.39;culprit=QD GT:AD:DP:GQ:PL 0/1:7,6:13:99:136,0,180 2 219265396 rs3795985 C T 946.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.162;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=8.332;HaplotypeScore=7.5231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=1.046;SB=-1.050e+02;SOR=1.911;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 0/1:39,32:72:99:975,0,1007 2 219265677 rs115254818 G C 444.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.283;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=1.900;SB=-6.700e+01;SOR=0.941;VQSLOD=9.24;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:18,16:34:99:473,0,531 2 219266108 rs2607726 C G 789.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=0.00;SOR=6.184;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:818,63,0 2 219266204 rs2252235 T C 880.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.017;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=6.115;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=-1.115;SB=-3.840e+02;SOR=0.207;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:28,33:61:99:909,0,822 2 219267781 rs2227255 C T 995.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=7.060;HaplotypeScore=2.7059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-0.936;SB=-3.830e+02;SOR=1.682;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 0/1:29,40:70:99:1024,0,681 2 219267913 rs2227258 A G 1930.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.379;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=2.564;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=1.532;SB=-1.148e+03;SOR=0.523;VQSLOD=9.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,67:109:99:1959,0,1036 2 219268698 rs2695339 A G 160.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=-2.823;SB=0.00;SOR=1.085;VQSLOD=7.83;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,6:10:99:189,0,130 2 219268803 rs2579959 G A 956.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.163;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.749;HaplotypeScore=4.1083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-0.872;SB=-3.050e+02;SOR=0.264;VQSLOD=9.79;culprit=SOR GT:AD:DP:GQ:PL 0/1:27,38:66:99:985,0,697 2 219288382 rs4672893 A G 1311.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;SB=-2.401e+02;SOR=3.145;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:96:1340,96,0 2 219295835 rs4674307 G A 1064.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;SB=-2.650e+02;SOR=2.712;VQSLOD=6.42;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,36:36:84:1093,84,0 2 219305404 rs2305833 G C 2114.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-6.880e+02;SOR=1.999;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2143,157,0 2 219319657 rs6436058 A G 2395.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.38;SB=-1.131e+03;SOR=1.061;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2424,181,0 2 219320207 rs3932856 C A 1176.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.68;SB=0.00;SOR=5.549;VQSLOD=4.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:93:1205,93,0 2 219320233 . GAAA G 1772.73 PASS AC=2;AF=1.00;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQ0=0;QD=28.29;RPA=18,15;RU=A;SB=-8.133e+01;SOR=5.728;STR;VQSLOD=1.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:49:99:1726,136,0 2 219321692 rs5838699 CA C 266.73 PASS AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.23;RPA=11,10;RU=A;SB=0.00;SOR=5.136;STR;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:304,36,0 2 219339283 rs549026 T C 862.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.00;SB=-4.276e+01;SOR=4.892;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:66:891,66,0 2 219350358 rs141872712 CAAA C 497.73 PASS AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.28;RPA=24,21;RU=A;SB=-8.541e+01;SOR=2.179;STR;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:19:48:535,48,0 2 219353195 rs10932782 C T 1985.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.20;SB=-5.780e+02;SOR=2.372;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2014,153,0 2 219433583 . T C 264.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.211;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.03;ReadPosRankSum=-1.071;SB=-1.765e+00;SOR=1.214;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 0/1:13,9:22:99:293,0,427 2 219433597 rs526897 G A 1100.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-1.781e+02;SOR=3.383;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:90:1129,90,0 2 219433888 rs689116 C A 972.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-2.211e+02;SOR=2.621;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:75:1001,75,0 2 219445165 rs589967 T C 442.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;SB=0.00;SOR=5.283;VQSLOD=8.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:471,36,0 2 219445860 rs34214861 GAA G 1146.73 PASS AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.49;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.07;RPA=3,1;RU=A;SB=0.00;SOR=6.273;STR;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:1184,66,0 2 219447912 rs2952825 A G 300.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=29.8274;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.14;SB=-8.497e+01;SOR=2.833;VQSLOD=4.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:24:329,24,0 2 219458656 rs538483 T C 457.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.63;SB=0.00;SOR=5.136;VQSLOD=8.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:486,36,0 2 219480804 rs485765 G C 3909.77 PASS AC=2;AF=1.00;AN=2;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-1.271e+03;SOR=2.284;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,125:125:99:3938,307,0 2 219487299 rs1850169 A T 1124.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.336;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=5.203;HaplotypeScore=1.9994;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.40;ReadPosRankSum=-1.715;SB=-1.770e+02;SOR=3.321;VQSLOD=4.33;culprit=FS GT:AD:DP:GQ:PL 1/1:2,35:37:49:1153,49,0 2 219492924 rs612874 T C 5165.77 PASS AC=2;AF=1.00;AN=2;DB;DP=177;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.19;SB=-3.275e+03;SOR=0.727;VQSLOD=5.62;culprit=DP GT:AD:DP:GQ:PL 1/1:0,177:177:99:5194,382,0 2 219494037 rs864990 G A 611.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-8.197e+01;SOR=3.500;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:48:640,48,0 2 219498759 rs7574429 T G 3569.77 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.05;SB=-1.506e+03;SOR=1.462;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,108:108:99:3598,259,0 2 219501133 rs2278530 G A 4187.77 PASS AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-2.520e+03;SOR=0.738;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,135:135:99:4216,319,0 2 219501328 rs1055816 G A 1895.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-6.350e+02;SOR=1.812;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1924,147,0 2 219508988 rs3770214 T C 4861.77 PASS AC=2;AF=1.00;AN=2;DB;DP=160;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.39;SB=-2.671e+03;SOR=1.036;VQSLOD=6.87;culprit=DP GT:AD:DP:GQ:PL 1/1:0,160:160:99:4890,358,0 2 219509618 rs2230115 C A 4169.77 PASS AC=2;AF=1.00;AN=2;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-2.361e+03;SOR=0.788;VQSLOD=4.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,130:130:99:4198,325,0 2 219510768 rs4674320 A G 1103.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.46;SB=-1.195e+02;SOR=4.174;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:93:1132,93,0 2 219517088 rs4674323 T C 1271.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.61;SB=-2.810e+02;SOR=2.891;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:93:1300,93,0 2 219525582 rs6722185 A G 1883.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.73;SB=-4.770e+02;SOR=2.437;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1912,138,0 2 219691566 rs1467320 A G 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.208;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=-0.728;SB=0.00;SOR=1.270;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:241,0,123 2 219691801 rs33985460 G A 285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.929;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=8.471;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=0.000;SB=-1.070e+02;SOR=1.033;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 0/1:22,11:33:99:314,0,683 2 219692527 . G GC 2501.73 PASS AC=2;AF=1.00;AN=2;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.42;RPA=3,4;RU=C;SB=-7.590e+02;SOR=1.839;STR;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:65:99:2539,193,0 2 219692696 rs1722196 G C 1713.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.387;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=11.1131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=1.442;SB=-1.136e+03;SOR=0.695;VQSLOD=8.11;culprit=FS GT:AD:DP:GQ:PL 0/1:75,69:144:99:1742,0,1867 2 219692790 . A AG 3103.73 PASS AC=2;AF=1.00;AN=2;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.70;RPA=3,4;RU=G;SB=-8.510e+02;SOR=2.133;STR;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:89:99:3141,241,0 2 219695487 rs692243 G C 340.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.142;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.403;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=-0.182;SB=-1.070e+02;SOR=0.095;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:19,14:33:99:369,0,653 2 219696014 rs650898 G A 1289.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.66;SB=-7.820e+02;SOR=0.737;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1318,102,0 2 219755011 rs121908120 T A 1789.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.821;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-0.378;SB=-9.670e+02;SOR=0.650;VQSLOD=7.85;culprit=FS GT:AD:DP:GQ:PL 0/1:77,73:150:99:1818,0,1894 2 219825211 rs36115038 G A 841.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=0.819;SB=-4.730e+02;SOR=0.749;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 0/1:20,32:52:99:870,0,505 2 219849633 rs114014734 G A 413.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.009;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=10.182;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-1.372;SB=-2.832e+02;SOR=0.048;VQSLOD=4.80;culprit=FS GT:AD:DP:GQ:PL 0/1:11,18:29:99:442,0,306 2 219903258 rs6736922 T G 775.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.954;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=5.761;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.62;ReadPosRankSum=0.667;SB=-3.200e+02;SOR=1.386;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 0/1:59,31:90:99:804,0,1556 2 219903723 rs4674354 C T 777.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.963;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=1.884;SB=-5.010e+02;SOR=0.665;VQSLOD=8.51;culprit=FS GT:AD:DP:GQ:PL 0/1:46,34:80:99:806,0,1211 2 219903787 rs4672910 T C 680.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=-1.373;SB=-2.560e+02;SOR=0.548;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:34,27:61:99:709,0,898 2 219906066 rs11674400 C A 136.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.003;SB=-3.976e+01;SOR=0.223;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:165,0,175 2 219920037 rs394452 A G 2103.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.964;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=2.991;HaplotypeScore=4.4976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=0.160;SB=-1.309e+03;SOR=0.438;VQSLOD=7.95;culprit=DP GT:AD:DP:GQ:PL 0/1:67,82:149:99:2132,0,1805 2 219920412 rs3731881 A G 741.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=4.848;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=0.564;SB=-3.770e+02;SOR=1.181;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 0/1:33,31:64:99:770,0,897 2 219923410 rs367872931 G GAGA 3060.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;DB;DP=121;ExcessHet=3.0103;FS=5.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.85;RPA=2,3;RU=AGA;ReadPosRankSum=0.386;SB=-1.520e+03;SOR=0.422;STR;VQSLOD=3.73;culprit=FS GT:AD:DP:GQ:PL 0/1:55,59:121:99:3098,0,2782 2 219941063 rs897477 G A 948.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.210;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.761;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=0.508;SB=-5.640e+02;SOR=0.818;VQSLOD=7.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,43:98:99:977,0,1545 2 220011537 rs139194189 A T 387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.400;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-0.773;SB=-2.190e+02;SOR=0.790;VQSLOD=6.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,16:32:99:416,0,450 2 220012576 rs7585742 G C 861.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.851;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.234;HaplotypeScore=5.7251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.024;SB=-1.640e+02;SOR=1.061;VQSLOD=7.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,26:57:99:890,0,750 2 220022176 rs6436120 C T 1093.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.20;SB=0.00;SOR=6.804;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:87:1122,87,0 2 220022435 rs2030452 G C 721.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.805;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=-0.089;SB=-1.760e+02;SOR=0.772;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:20,26:46:99:750,0,533 2 220023196 rs2293069 A C 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=-0.516;SB=-1.765e+00;SOR=1.230;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:9,6:15:99:202,0,272 2 220026369 rs6713887 G T 318.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.964;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=2.048;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-1.023;SB=-6.400e+01;SOR=1.473;VQSLOD=7.00;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,12:22:99:347,0,285 2 220028900 rs6753739 A G 875.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.777;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=1.009;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=-0.460;SB=-4.450e+02;SOR=0.521;VQSLOD=9.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,32:60:99:904,0,759 2 220033830 rs3795986 A G 944.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.526;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=3.005;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=-0.684;SB=-5.420e+02;SOR=0.980;VQSLOD=7.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,38:80:99:973,0,1124 2 220033956 rs6436121 T C 797.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.498;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-1.482;SB=-4.190e+02;SOR=0.801;VQSLOD=8.88;culprit=FS GT:AD:DP:GQ:PL 0/1:28,32:60:99:826,0,897 2 220037393 rs4674361 A G 2612.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-1.407e+03;SOR=1.039;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2641,196,0 2 220037666 rs1127102 A G 1490.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.244;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=1.785;HaplotypeScore=1.8640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=0.612;SB=-8.470e+02;SOR=0.509;VQSLOD=9.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,55:89:99:1519,0,976 2 220037756 rs1043160 A G 1247.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.980;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=2.543;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-0.077;SB=-6.710e+02;SOR=0.774;VQSLOD=7.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,46:106:99:1276,0,1527 2 220040330 rs1127101 A G 688.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=3.058;HaplotypeScore=4.4013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.61;ReadPosRankSum=0.114;SB=-4.130e+02;SOR=1.018;VQSLOD=7.05;culprit=QD GT:AD:DP:GQ:PL 0/1:49,31:80:99:717,0,1272 2 220041091 rs6436123 G A 645.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.329;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.06;ReadPosRankSum=1.120;SB=-1.430e+02;SOR=0.957;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:6,22:28:99:674,0,130 2 220041433 rs6436124 C A 229.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=1.267;SB=-3.201e+01;SOR=0.804;VQSLOD=9.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,10:19:99:258,0,238 2 220041455 rs6436125 C T 1082.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-2.630e+02;SOR=2.368;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:81:1111,81,0 2 220045035 rs7577690 G A 647.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.674;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.122;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=0.312;SB=-2.350e+02;SOR=1.022;VQSLOD=7.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,24:51:99:676,0,755 2 220046349 rs2272017 G C 2063.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.530;DB;DP=156;Dels=0.00;ExcessHet=3.0103;FS=2.089;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=1.417;SB=-9.870e+02;SOR=0.503;VQSLOD=6.94;culprit=DP GT:AD:DP:GQ:PL 0/1:82,74:156:99:2092,0,2196 2 220046975 rs3731900 C A 2613.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.981;DB;DP=150;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.43;ReadPosRankSum=-1.905;SB=-1.119e+03;SOR=0.693;VQSLOD=8.14;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:54,96:150:99:2642,0,1451 2 220047393 rs3731901 C T 623.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.947;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=2.741;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.79;ReadPosRankSum=0.220;SB=-1.215e+02;SOR=0.155;VQSLOD=8.60;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,20:30:99:652,0,319 2 220071803 rs6714820 C G 1058.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=10.8405;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-4.090e+02;SOR=1.542;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:81:1087,81,0 2 220071879 rs66491679 TG T 720.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.348;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;MQRankSum=0.326;POSITIVE_TRAIN_SITE;QD=28.83;RPA=9,8;RU=G;ReadPosRankSum=-1.530;SB=-2.330e+02;SOR=0.638;STR;VQSLOD=2.72;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,24:29:59:758,59,0 2 220072766 rs4674366 G T 1925.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.63;SB=-8.170e+02;SOR=1.179;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1954,147,0 2 220072852 rs4674367 C T 667.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=3.652;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=1.012;SB=-2.020e+02;SOR=1.197;VQSLOD=7.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,25:65:99:696,0,1182 2 220078395 rs376713235 C T 840.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.809;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.17;ReadPosRankSum=-0.723;SB=-3.220e+02;SOR=0.838;VQSLOD=8.31;culprit=FS GT:AD:DP:GQ:PL 0/1:22,30:52:99:869,0,647 2 220078496 rs2139823 T C 2024.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.14;SB=-7.870e+02;SOR=1.685;VQSLOD=7.27;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,63:63:99:2053,153,0 2 220083279 rs1109866 C T 2784.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.29;SB=-1.336e+03;SOR=1.080;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2813,211,0 2 220083453 rs1109867 G T 1261.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SB=-8.097e+01;SOR=4.863;VQSLOD=5.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:99:1290,99,0 2 220085845 rs2276633 A G 3106.77 PASS AC=2;AF=1.00;AN=2;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.99;SB=-1.992e+03;SOR=0.711;VQSLOD=5.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,111:111:99:3135,232,0 2 220088248 rs908196 A G 1662.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.23;SB=-1.019e+03;SOR=0.884;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:56:99:1691,126,0 2 220088521 . G A 1174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.343;DP=83;Dels=0.00;ExcessHet=3.0103;FS=2.029;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.15;ReadPosRankSum=2.116;SB=-4.390e+02;SOR=0.481;VQSLOD=7.87;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:38,45:83:99:1203,0,1226 2 220089590 . T TG 4268.73 PASS AC=2;AF=1.00;AN=2;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.15;RPA=4,5;RU=G;SB=-2.024e+03;SOR=0.822;STR;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,113:122:99:4306,340,0 2 220089685 rs2276637 G C 3596.77 PASS AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-2.237e+03;SOR=0.798;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,118:118:99:3625,259,0 2 220100787 rs2293079 C T 1461.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.408;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-0.386;SB=-6.280e+02;SOR=0.684;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:48,57:105:99:1490,0,1333 2 220108423 rs35328001 C T 332.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.937;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=5.011;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=-0.021;SB=-1.020e+02;SOR=0.132;VQSLOD=10.17;culprit=FS GT:AD:DP:GQ:PL 0/1:16,14:30:99:361,0,552 2 220113242 rs7601549 T G 2310.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-8.960e+02;SOR=1.745;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2339,169,0 2 220118531 rs939574 G C 773.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.76;SB=-5.280e+02;SOR=0.693;VQSLOD=5.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:57:802,57,0 2 220134476 rs5838731 AG A 654.73 PASS AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=22.12;RPA=5,4;RU=G;SB=-2.680e+02;SOR=1.179;STR;VQSLOD=4.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:19:54:692,54,0 2 220135208 rs2891733 C T 1897.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.25;SB=-7.497e+01;SOR=5.630;VQSLOD=4.10;culprit=DP GT:AD:DP:GQ:PL 1/1:0,51:51:99:1926,147,0 2 220136155 rs7594971 T C 7779.77 PASS AC=2;AF=1.00;AN=2;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3365;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=2;POSITIVE_TRAIN_SITE;QD=31.24;SB=-3.576e+03;SOR=1.124;VQSLOD=4.77;culprit=DP GT:AD:DP:GQ:PL 1/1:0,249:250:99:7808,590,0 2 220136351 rs3731892 G A 5727.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.889;DB;DP=178;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5450;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=0.000;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.18;ReadPosRankSum=-0.584;SB=-1.951e+03;SOR=0.820;VQSLOD=1.90;culprit=DP GT:AD:DP:GQ:PL 1/1:1,177:178:99:5756,394,0 2 220136371 rs3731894 T C 4701.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.804;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3249;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.93;ReadPosRankSum=0.558;SB=-1.981e+03;SOR=0.723;VQSLOD=3.43;culprit=FS GT:AD:DP:GQ:PL 1/1:1,151:152:99:4730,334,0 2 220155459 rs137994137 C A 968.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.651;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-0.963;SB=-2.260e+02;SOR=0.587;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:41,33:74:99:997,0,1266 2 220155834 rs1983298 T C 303.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.62;ReadPosRankSum=-2.362;SB=-4.176e+01;SOR=1.179;VQSLOD=8.76;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:2,9:11:47:332,0,47 2 220156146 rs1983297 G A 1545.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=1.333;HaplotypeScore=3.5926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=0.296;SB=-9.490e+02;SOR=0.636;VQSLOD=8.38;culprit=DP GT:AD:DP:GQ:PL 0/1:80,61:141:99:1574,0,2038 2 220162015 rs17847406 C G 1433.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.513;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=14.138;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=0.790;SB=-5.710e+02;SOR=1.063;VQSLOD=5.13;culprit=FS GT:AD:DP:GQ:PL 0/1:47,47:94:99:1462,0,1150 2 220162959 rs12105638 G A 176.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.434;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-0.281;SB=-2.977e+01;SOR=0.141;VQSLOD=9.69;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,7:15:99:205,0,274 2 220164764 rs200184183 C T 552.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.607;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=4.546;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=1.586;SB=-3.790e+02;SOR=0.250;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:19,26:45:99:581,0,525 2 220165763 rs2292606 T C 602.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.656;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=-1.963;SB=-2.050e+02;SOR=0.608;VQSLOD=9.42;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:31,25:56:99:631,0,837 2 220168616 rs2271594 C T 2032.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.982;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=4.243;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-0.463;SB=-9.180e+02;SOR=0.353;VQSLOD=7.20;culprit=DP GT:AD:DP:GQ:PL 0/1:69,77:146:99:2061,0,1900 2 220172576 rs7591986 A C 757.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.793;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=4.642;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=0.065;SB=-3.930e+02;SOR=1.328;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 0/1:41,33:74:99:786,0,1035 2 220172731 rs2292601 A G 478.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.419;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=0.510;SB=-2.650e+02;SOR=0.257;VQSLOD=10.41;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,19:33:99:507,0,396 2 220173905 rs57623838 C T 382.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.896;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=5.632;HaplotypeScore=17.5770;MLEAC=1;MLEAF=0.500;MQ=60.30;MQ0=0;MQRankSum=-0.877;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=0.227;SB=-9.500e+01;SOR=1.883;VQSLOD=0.014;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,15:36:99:411,0,481 2 220174056 rs6736979 T C 58.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.187;HaplotypeScore=1.5592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.67;ReadPosRankSum=0.365;SB=-5.300e+01;SOR=0.269;VQSLOD=7.81;culprit=QD GT:AD:DP:GQ:PL 0/1:12,4:16:87:87,0,350 2 220194247 rs35419388 A AATT 984.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;DB;DP=37;ExcessHet=3.0103;FS=1.297;MLEAC=1;MLEAF=0.500;MQ=60.29;MQ0=0;MQRankSum=1.002;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.35;RPA=1,2;RU=ATT;ReadPosRankSum=-1.808;SB=-4.150e+02;SOR=0.473;STR;VQSLOD=0.118;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,19:37:99:1022,0,908 2 220195446 rs6707009 C G 719.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=2.412;HaplotypeScore=3.3036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-1.698;SB=-2.340e+02;SOR=1.241;VQSLOD=6.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,29:61:99:748,0,791 2 220195738 rs34019246 GTCT G 589.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.34;RPA=2,1;RU=TCT;ReadPosRankSum=0.878;SB=-1.640e+02;SOR=0.481;STR;VQSLOD=9.23;culprit=FS GT:AD:DP:GQ:PL 0/1:16,13:34:99:627,0,828 2 220197207 rs2048737 T C 172.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.047;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.64;ReadPosRankSum=0.000;SB=-1.010e+02;SOR=0.818;VQSLOD=9.99;culprit=QD GT:AD:DP:GQ:PL 0/1:12,8:20:99:201,0,353 2 220197321 rs2385405 C T 477.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.363;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.747;SB=-1.610e+02;SOR=1.179;VQSLOD=7.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,17:37:99:506,0,561 2 220197388 rs2385404 C A 553.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.996;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=0.045;SB=-3.450e+02;SOR=0.649;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:28,25:53:99:582,0,827 2 220197492 rs2385402 C G 566.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.237;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=0.209;SB=-3.110e+02;SOR=0.578;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:29,22:52:99:595,0,699 2 220197672 rs2385401 A G 223.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=1.636;SB=-1.070e+02;SOR=1.085;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:252,0,174 2 220197730 rs2385400 G C 260.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=-1.247;SB=-1.350e+02;SOR=0.694;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:5,9:15:92:289,0,92 2 220197821 rs5838736 CTA C 669.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;DB;DP=29;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.80;RPA=8,7;RU=TA;ReadPosRankSum=-0.232;SB=-2.390e+02;SOR=0.395;STR;VQSLOD=7.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,18:29:99:707,0,287 2 220197929 rs138579161 CTTT C 616.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;DB;DP=52;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;RPA=20,17;RU=T;ReadPosRankSum=-0.258;SB=-2.260e+02;SOR=1.292;STR;VQSLOD=7.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,23:52:99:654,0,708 2 220239534 rs3731904 G A 469.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.035;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=0.076;SB=-7.200e+01;SOR=0.409;VQSLOD=10.36;culprit=FS GT:AD:DP:GQ:PL 0/1:15,17:32:99:498,0,463 2 220239561 rs3731905 C G 774.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=3.519;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=-1.041;SB=-2.150e+02;SOR=0.262;VQSLOD=9.72;culprit=SOR GT:AD:DP:GQ:PL 0/1:19,28:47:99:803,0,581 2 220246218 rs6436148 T C 6180.77 PASS AC=2;AF=1.00;AN=2;DB;DP=209;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=-3.868e+03;SOR=0.803;VQSLOD=5.51;culprit=DP GT:AD:DP:GQ:PL 1/1:0,209:209:99:6209,451,0 2 220249299 . C CT 787.73 PASS AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.13;RPA=8,9;RU=T;SB=-9.551e+01;SOR=3.767;STR;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:36:84:825,84,0 2 220249329 rs2002892 C T 724.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.69;SB=-4.176e+01;SOR=4.615;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:57:753,57,0 2 220250147 rs907679 A G 2638.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-1.109e+03;SOR=1.609;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2667,205,0 2 220250322 rs878437 C A 4630.77 PASS AC=2;AF=1.00;AN=2;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.50;SB=-2.757e+03;SOR=0.792;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,147:147:99:4659,340,0 2 220250826 rs2271456 G A 2618.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=-9.450e+02;SOR=1.942;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:2647,202,0 2 220250897 rs11352428 AG A 962.73 PASS AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.16;RPA=3,2;RU=G;SB=-3.000e+02;SOR=1.802;STR;VQSLOD=5.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:25:72:1000,72,0 2 220251178 rs2271457 T C 2390.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.88;SB=-1.089e+03;SOR=1.552;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2419,184,0 2 220251208 rs1040009 T C 2027.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-7.420e+02;SOR=1.999;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2056,147,0 2 220252287 rs138394024 CTCG C 1200.73 PASS AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.34;SB=-2.055e+02;SOR=2.948;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:1238,57,0 2 220264412 rs13018645 A G 1864.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=9.0925;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.90;SB=-9.680e+02;SOR=0.970;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1893,138,0 2 220264543 rs33919520 C CAT 6939.73 PASS AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-2.990e+03;SOR=1.096;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,121:121:99:6977,364,0 2 220283259 rs1318299 A G 343.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-7.697e+01;SOR=2.494;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:372,30,0 2 220283277 rs2017800 T C 461.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.91;SB=-1.205e+02;SOR=2.147;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:490,36,0 2 220283826 rs907677 T G 940.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.35;SB=-4.680e+02;SOR=1.214;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:69:969,69,0 2 220284717 rs2666106 G C 487.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.84;SB=-4.076e+01;SOR=3.912;VQSLOD=7.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:516,39,0 2 220284779 rs12991025 C T 1189.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.31;SB=-3.730e+02;SOR=2.073;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:90:1218,90,0 2 220306413 rs4674398 G T 815.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.13;SB=-3.480e+02;SOR=1.688;VQSLOD=4.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:63:844,63,0 2 220308581 rs10932805 A C 794.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.51;SB=-3.876e+01;SOR=4.804;VQSLOD=7.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:63:823,63,0 2 220315970 rs10932806 G A 3330.77 PASS AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.23;SB=-1.470e+03;SOR=1.550;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,118:118:99:3359,247,0 2 220316579 rs4674399 C T 1281.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.52;SB=-4.680e+02;SOR=1.900;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:96:1310,96,0 2 220327262 rs34553082 C T 432.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;SB=0.00;SOR=5.283;VQSLOD=8.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:461,36,0 2 220330661 . A G 382.77 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.44;SB=-8.297e+01;SOR=2.833;VQSLOD=5.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:411,33,0 2 220330724 rs1567488 C T 1013.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.40;SB=-5.600e+02;SOR=1.270;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:78:1042,78,0 2 220330804 rs1567487 T C 1985.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.20;SB=-1.315e+03;SOR=0.720;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2014,144,0 2 220333950 rs10167209 T C 4476.77 PASS AC=2;AF=1.00;AN=2;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.16;SB=-1.514e+03;SOR=1.754;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,135:135:99:4505,340,0 2 220345117 rs4674403 T G 110.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=1.242;SB=0.00;SOR=0.412;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:139,0,152 2 220345118 rs4674404 T C 105.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=1.242;SB=0.00;SOR=0.412;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:134,0,193 2 220346596 rs3731906 C T 227.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.615;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=4.075;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.90;ReadPosRankSum=1.388;SB=-4.176e+01;SOR=0.086;VQSLOD=9.47;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,9:23:99:256,0,513 2 220348751 . C T 924.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340;DP=89;Dels=0.00;ExcessHet=3.0103;FS=4.099;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.39;ReadPosRankSum=-0.254;SB=-4.210e+02;SOR=1.075;VQSLOD=5.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,37:89:99:953,0,1292 2 220353013 rs875098 G A 988.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=1.104;SB=-6.530e+02;SOR=0.704;VQSLOD=8.24;culprit=FS GT:AD:DP:GQ:PL 0/1:48,42:90:99:1017,0,1147 2 220353104 rs875097 A G 1132.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.164;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.209;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=0.384;SB=-6.630e+02;SOR=0.498;VQSLOD=8.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,39:70:99:1161,0,886 2 220353440 rs62191888 G T 1052.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.113;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=2.933;HaplotypeScore=3.3286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=0.424;SB=-4.170e+02;SOR=1.085;VQSLOD=7.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,40:86:99:1081,0,1267 2 220353532 rs13026308 C A 793.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.523;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=6.712;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-0.303;SB=-4.920e+02;SOR=0.634;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 0/1:30,36:66:99:822,0,783 2 220354108 rs55760516 A G 992.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=4.167;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.42;ReadPosRankSum=0.985;SB=-2.810e+02;SOR=1.347;VQSLOD=6.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,34:57:99:1021,0,622 2 220354365 rs56132883 C T 789.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=0.450;SB=-3.520e+02;SOR=0.585;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:35,28:63:99:818,0,913 2 220354757 rs6742231 G C 180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.667;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=9.874;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-0.196;SB=-2.657e-01;SOR=3.516;VQSLOD=4.87;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:209,0,284 2 220355476 rs371901843 C T 1406.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.35;ReadPosRankSum=0.861;SB=-8.240e+02;SOR=0.684;VQSLOD=7.56;culprit=FS GT:AD:DP:GQ:PL 0/1:47,51:98:99:1435,0,1187 2 220355529 rs12464085 A G 1020.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=4.289;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=0.816;SB=-4.950e+02;SOR=1.067;VQSLOD=7.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,37:82:99:1049,0,1285 2 220356449 rs6747041 G C 300.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.915;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=9.412;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=-0.877;SB=-2.520e+02;SOR=0.076;VQSLOD=5.26;culprit=FS GT:AD:DP:GQ:PL 0/1:13,15:28:99:329,0,412 2 220356520 rs12473286 G T 664.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.478;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=5.184;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=1.354;SB=-4.870e+02;SOR=0.296;VQSLOD=9.21;culprit=FS GT:AD:DP:GQ:PL 0/1:29,29:58:99:693,0,657 2 220356806 rs907146 C T 2663.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.97;SB=-1.329e+03;SOR=1.192;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2692,199,0 2 220357594 . C A 198.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.20;ReadPosRankSum=-0.812;SB=-5.900e+01;SOR=1.270;VQSLOD=8.46;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:227,0,220 2 220358198 rs1050816 C T 568.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.850;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.243;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-1.449;SB=-1.610e+02;SOR=1.044;VQSLOD=7.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,23:52:99:597,0,836 2 220361265 rs2385541 A G 1189.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.05;SB=-2.331e+02;SOR=3.026;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:90:1218,90,0 2 220361344 rs2385540 G A 372.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.07;SB=-7.897e+01;SOR=2.303;VQSLOD=4.75;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,10:10:30:401,30,0 2 220361435 rs1567489 C G 778.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.93;SB=0.00;SOR=6.273;VQSLOD=4.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:807,66,0 2 220361486 rs2010592 G A 831.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.992;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=-0.843;SB=-1.020e+02;SOR=0.504;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:26,29:55:99:860,0,737 2 220361520 rs16859986 C G 1278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.989;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=1.067;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=2.145;SB=-2.790e+02;SOR=0.518;VQSLOD=8.92;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:47,45:92:99:1307,0,1488 2 220362283 rs2010528 C G 1175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.978;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.935;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=0.293;SB=-4.480e+02;SOR=0.544;VQSLOD=9.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,42:76:99:1204,0,1011 2 220362557 rs12474050 C T 3060.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;DB;DP=211;Dels=0.00;ExcessHet=3.0103;FS=3.308;HaplotypeScore=4.2037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-1.624;SB=-1.074e+03;SOR=0.972;VQSLOD=6.50;culprit=DP GT:AD:DP:GQ:PL 0/1:95,115:211:99:3089,0,2473 2 220362899 rs2029251 C G 7883.77 PASS AC=2;AF=1.00;AN=2;DB;DP=248;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-3.325e+03;SOR=1.648;VQSLOD=4.25;culprit=DP GT:AD:DP:GQ:PL 1/1:0,248:248:99:7912,578,0 2 220366953 rs2385539 G C 271.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.204;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=1.569;SB=-3.777e+01;SOR=0.113;VQSLOD=9.21;culprit=SOR GT:AD:DP:GQ:PL 0/1:12,9:21:99:300,0,397 2 220371181 rs10932808 T A 1744.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.08;SB=-5.830e+02;SOR=2.147;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1773,135,0 2 220379560 rs3731909 C G 1890.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=1.363;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=1.061;SB=-1.172e+03;SOR=0.560;VQSLOD=8.41;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,76:136:99:1919,0,1560 2 220380125 rs1872858 G A 358.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.692;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=1.078;SB=-7.000e+01;SOR=0.321;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:13,13:26:99:387,0,376 2 220397811 rs6731344 T C 1057.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-1.245e+02;SOR=4.112;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:87:1086,87,0 2 220401751 rs2385538 G A 1552.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.061;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.673;HaplotypeScore=3.7990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=-1.807;SB=-8.300e+02;SOR=0.614;VQSLOD=9.09;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:63,60:123:99:1581,0,1814 2 220402624 rs11689270 G T 1480.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.19;ReadPosRankSum=0.980;SB=-6.170e+02;SOR=0.576;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:1,45:46:99:1509,117,0 2 220402671 rs11689281 G T 625.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.659;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.552;HaplotypeScore=7.1566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=-0.202;SB=-2.560e+02;SOR=1.201;VQSLOD=7.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,23:47:99:654,0,646 2 220402680 rs11695248 T C 652.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.973;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=4.235;HaplotypeScore=4.3610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=-0.850;SB=-1.540e+02;SOR=1.445;VQSLOD=6.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,24:49:99:681,0,601 2 220404381 rs1976616 A G 2729.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.04;SB=-1.530e+03;SOR=0.924;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:95:99:2758,202,0 2 220404648 rs1043833 C T 426.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.167;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=2.624;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.70;ReadPosRankSum=-0.225;SB=-1.660e+02;SOR=1.187;VQSLOD=7.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,19:44:99:455,0,703 2 220404726 rs1043832 G A 414.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=4.504;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=-0.570;SB=-1.790e+02;SOR=1.170;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 0/1:26,16:42:99:443,0,716 2 220405230 rs6436154 G A 851.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.927;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.836;HaplotypeScore=1.8934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.16;ReadPosRankSum=0.040;SB=-3.640e+02;SOR=0.922;VQSLOD=6.92;culprit=QD GT:AD:DP:GQ:PL 0/1:58,35:93:99:880,0,1589 2 220405321 rs6436155 T C 2488.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-1.313e+03;SOR=1.031;VQSLOD=7.19;culprit=DP GT:AD:DP:GQ:PL 1/1:0,80:80:99:2517,193,0 2 220406144 rs35417960 A G 361.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.563;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=3.163;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=1.162;SB=-8.297e+01;SOR=0.082;VQSLOD=8.24;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,15:30:99:390,0,472 2 220406239 rs13004994 T G 1431.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.317;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=-1.134;SB=-5.860e+02;SOR=0.689;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:40,56:96:99:1460,0,1139 2 220406722 rs3731912 T C 1222.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.211;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=-0.362;SB=-6.550e+02;SOR=0.664;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:30,40:70:99:1251,0,780 2 220409701 rs10932811 C T 299.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.717;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.714;HaplotypeScore=1.8824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=-1.506;SB=-5.500e+01;SOR=1.075;VQSLOD=7.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,11:26:99:328,0,439 2 220412256 rs8179770 T C 547.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.22;SB=-2.391e+02;SOR=1.371;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:576,42,0 2 220413661 rs12996466 C T 680.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=-7.997e+01;SOR=3.611;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:709,54,0 2 220414016 rs6436156 C T 2678.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9955;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.12;ReadPosRankSum=2.156;SB=-9.310e+02;SOR=0.540;VQSLOD=5.95;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 1/1:2,90:92:99:2707,146,0 2 220414019 rs13023533 T C 878.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.664;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.931;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=2.085;SB=-3.710e+02;SOR=0.493;VQSLOD=8.57;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:49,38:87:99:907,0,1333 2 220415595 rs146790993 GGA G 606.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;DB;DP=63;ExcessHet=3.0103;FS=3.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.11;RPA=3,2;RU=GA;ReadPosRankSum=0.337;SB=-2.540e+02;SOR=0.977;STR;VQSLOD=6.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,17:63:99:644,0,1953 2 220415646 rs1043582 T C 246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.634;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.444;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.48;ReadPosRankSum=-0.119;SB=-1.230e+02;SOR=0.403;VQSLOD=8.34;culprit=QD GT:AD:DP:GQ:PL 0/1:34,11:45:99:275,0,903 2 220415717 rs3731918 G A 403.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.35;ReadPosRankSum=-1.230;SB=-6.600e+01;SOR=0.776;VQSLOD=10.06;culprit=FS GT:AD:DP:GQ:PL 0/1:8,14:22:99:432,0,228 2 220415752 rs6745782 C T 444.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.02;SB=0.00;SOR=5.136;VQSLOD=7.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:473,36,0 2 220416570 rs4672931 C T 880.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-3.610e+02;SOR=1.358;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:72:909,72,0 2 220416591 rs4672932 C T 852.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.19;SB=-4.690e+02;SOR=0.693;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:881,66,0 2 220416803 rs4672933 A T 2892.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.45;SB=-1.858e+03;SOR=0.714;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:2921,214,0 2 220416942 rs34490902 G C 922.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.937;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.614;SB=-4.970e+02;SOR=0.830;VQSLOD=7.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,40:69:99:951,0,690 2 220416967 rs4672934 C T 481.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.976;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.45;ReadPosRankSum=1.848;SB=-1.640e+02;SOR=0.802;VQSLOD=8.66;culprit=FS GT:AD:DP:GQ:PL 0/1:30,21:51:99:510,0,755 2 220417228 rs60549465 G T 122.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=4.868;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.82;ReadPosRankSum=-0.862;SB=-9.400e+01;SOR=0.132;VQSLOD=8.75;culprit=QD GT:AD:DP:GQ:PL 0/1:11,7:18:99:151,0,319 2 220417266 rs59332477 C T 283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.888;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=4.155;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=-0.110;SB=-1.360e+02;SOR=0.157;VQSLOD=9.49;culprit=SOR GT:AD:DP:GQ:PL 0/1:20,10:30:99:312,0,623 2 220419236 rs10932813 T C 3119.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5526;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-1.532e+03;SOR=1.007;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:3148,238,0 2 220419339 rs10932814 T C 3555.77 PASS AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-2.194e+03;SOR=0.906;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,122:122:99:3584,268,0 2 220420785 rs3087971 G A 631.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.022;HaplotypeScore=1.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=0.640;SB=-3.350e+02;SOR=0.941;VQSLOD=7.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,27:57:99:660,0,823 2 220420956 rs10932816 A G 1239.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.63;SB=-5.330e+02;SOR=1.179;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:96:1268,96,0 2 220421417 rs1983210 C G 2788.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-11.284;DB;DP=193;Dels=0.00;ExcessHet=3.0103;FS=7.236;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=0.229;SB=-6.100e+02;SOR=1.225;VQSLOD=5.06;culprit=DP GT:AD:DP:GQ:PL 0/1:98,95:193:99:2817,0,2713 2 220421479 rs13010015 A G 1493.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.481;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=2.482;HaplotypeScore=5.1081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=0.000;SB=-3.100e+02;SOR=0.377;VQSLOD=9.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,52:96:99:1522,0,1358 2 220422400 rs2278200 C G 289.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.905;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.246;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.11;ReadPosRankSum=0.052;SB=-6.800e+01;SOR=1.714;VQSLOD=5.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,9:16:99:318,0,186 2 220422774 rs2278201 A G 1933.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.699;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=6.362;HaplotypeScore=5.3453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=0.695;SB=-1.114e+03;SOR=0.360;VQSLOD=8.29;culprit=FS GT:AD:DP:GQ:PL 0/1:63,74:137:99:1962,0,1634 2 220423704 rs10208534 A G 435.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.146;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.451;HaplotypeScore=2.6112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=0.227;SB=-1.610e+02;SOR=1.194;VQSLOD=7.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,17:32:99:464,0,341 2 220427395 rs3183099 G A 426.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQ0=0;MQRankSum=1.355;POSITIVE_TRAIN_SITE;QD=8.71;ReadPosRankSum=-0.187;SB=-1.910e+02;SOR=0.622;VQSLOD=3.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,18:49:99:455,0,844 2 220427996 rs11904583 T C 557.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.22;SB=0.00;SOR=5.549;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:586,45,0 2 220430203 rs1039898 C T 1618.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.173;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.668;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-0.545;SB=-9.400e+02;SOR=0.590;VQSLOD=9.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:62,65:127:99:1647,0,1657 2 220431919 rs4674412 A G 1329.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.30;SB=-6.520e+02;SOR=0.927;VQSLOD=5.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:99:1358,102,0 2 220435034 rs10180675 A G 2444.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=11.264;DB;DP=210;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.1620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=1.162;SB=-1.630e+03;SOR=0.668;VQSLOD=6.70;culprit=DP GT:AD:DP:GQ:PL 0/1:112,98:210:99:2473,0,2827 2 220439678 rs12720063 C T 793.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.780;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.047;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=0.436;SB=-4.110e+02;SOR=0.922;VQSLOD=7.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,27:53:99:822,0,796 2 220462640 rs681747 G T 3305.77 PASS AC=2;AF=1.00;AN=2;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.5440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.48;SB=-1.921e+03;SOR=0.751;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,105:105:99:3334,247,0 2 220466199 rs620698 G T 3087.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-1.628e+03;SOR=1.059;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:3116,232,0 2 220466344 . G GT 1359.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.834;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.66;RPA=15,16;RU=T;ReadPosRankSum=-0.189;SB=-4.518e+02;SOR=0.723;STR;VQSLOD=8.71;culprit=FS GT:AD:DP:GQ:PL 1/1:10,67:103:7:1311,7,0 2 220470827 . A AC 1813.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.61;RPA=7,8;RU=C;ReadPosRankSum=0.334;SB=-8.630e+02;SOR=0.689;STR;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 0/1:43,60:114:99:1851,0,1209 2 220471116 rs633200 C G 1908.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-1.106e+03;SOR=0.854;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:1937,141,0 2 220473355 rs673951 G A 786.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=-0.201;SB=-4.570e+02;SOR=0.536;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:33,34:67:99:815,0,936 2 220476443 rs627530 C T 5556.77 PASS AC=2;AF=1.00;AN=2;DB;DP=203;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.51;SB=-3.075e+03;SOR=1.112;VQSLOD=5.22;culprit=DP GT:AD:DP:GQ:PL 1/1:0,202:203:99:5585,403,0 2 220476645 rs581547 T C 2848.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;SB=-1.459e+03;SOR=1.166;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2877,220,0 2 220479312 rs624773 T C 4301.77 PASS AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.40;SB=-2.465e+03;SOR=0.933;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,137:137:99:4330,313,0 2 220480246 rs67564244 C CAGAG 1221.73 PASS AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.60;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;RPA=1,3;RU=AG;SB=-4.411e+02;SOR=1.493;STR;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:20:54:1259,54,0 2 220480639 rs640807 T C 2345.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.61;SB=-1.168e+03;SOR=1.445;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2374,181,0 2 220480693 rs665845 G C 1990.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.74;SB=-8.110e+02;SOR=1.421;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:2019,150,0 2 220494118 rs597306 A C 1376.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;SB=-6.600e+02;SOR=1.127;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1405,105,0 2 220496974 rs182991533 C T 711.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=13.987;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=-0.293;SB=-2.080e+02;SOR=1.768;VQSLOD=5.10;culprit=FS GT:AD:DP:GQ:PL 0/1:21,28:49:99:740,0,590 2 220500423 rs589767 A G 1574.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.16;SB=-1.062e+03;SOR=0.693;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1603,114,0 2 220500426 rs639214 A G 1606.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=-9.120e+02;SOR=0.808;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1635,120,0 2 220502137 rs621515 C T 1259.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-2.301e+02;SOR=3.145;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:96:1288,96,0 2 220502367 rs635311 A C 4358.77 PASS AC=2;AF=1.00;AN=2;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-2.136e+03;SOR=1.273;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,136:136:99:4387,313,0 2 220505265 rs684428 T C 4991.77 PASS AC=2;AF=1.00;AN=2;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-3.263e+03;SOR=0.755;VQSLOD=7.03;culprit=DP GT:AD:DP:GQ:PL 1/1:0,165:165:99:5020,355,0 2 220586444 rs80113724 G A 337.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=-0.298;SB=-1.185e+02;SOR=0.776;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:2,15:17:35:366,0,35 2 220771223 rs4674470 C T 3260.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-1.679e+03;SOR=1.189;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3289,247,0 2 220771290 rs4674471 G A 2135.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-8.560e+02;SOR=1.508;VQSLOD=6.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2164,169,0 2 220771310 rs4674472 A G 2017.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-7.970e+02;SOR=1.430;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:2046,150,0 2 220771378 rs4674473 A G 1506.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.76;SB=-6.900e+02;SOR=1.329;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1535,111,0 2 222290902 rs2303901 A G 1055.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.898;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=1.951;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=1.034;SB=-4.380e+02;SOR=0.432;VQSLOD=9.94;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,41:85:99:1084,0,1261 2 222301357 rs3213844 T C 611.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.122;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.217;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=-1.166;SB=-2.600e+02;SOR=0.250;VQSLOD=10.34;culprit=SOR GT:AD:DP:GQ:PL 0/1:17,25:42:99:640,0,457 2 222307295 rs3815971 T A 236.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.300;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=-2.633;SB=0.00;SOR=0.693;VQSLOD=9.32;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:8,8:16:99:265,0,266 2 222307310 rs2288629 C A 763.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.06;SB=-3.577e+01;SOR=4.712;VQSLOD=4.12;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,21:21:60:792,60,0 2 222311066 rs2052943 G A 161.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=-1.687;SB=-6.700e+01;SOR=1.492;VQSLOD=6.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,7:10:64:190,0,64 2 222320427 rs2288627 G A 1167.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.872;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.850;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=1.088;SB=-5.760e+02;SOR=0.561;VQSLOD=9.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,45:83:99:1196,0,931 2 222321225 rs6718949 C T 886.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.437;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.39;ReadPosRankSum=-0.096;SB=-1.710e+02;SOR=0.606;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:21,30:51:99:915,0,604 2 222428332 rs11888889 G A 153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-1.053;SB=0.00;SOR=0.569;VQSLOD=9.30;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:182,0,205 2 222827492 rs13424672 T C 702.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.90;ReadPosRankSum=-1.252;SB=-4.330e+02;SOR=0.705;VQSLOD=8.41;culprit=FS GT:AD:DP:GQ:PL 0/1:42,29:72:99:731,0,1045 2 223161624 rs12694578 A G 505.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.52;SB=0.00;SOR=5.283;VQSLOD=7.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:534,39,0 2 223161889 rs12623857 A G 1358.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-4.960e+02;SOR=1.455;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1387,102,0 2 223162024 rs6754024 T G 706.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.737;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=-0.578;SB=-4.640e+02;SOR=0.458;VQSLOD=8.72;culprit=FS GT:AD:DP:GQ:PL 1/1:1,26:27:54:735,54,0 2 223317212 rs12613007 G A 424.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.32;SB=-1.503e+02;SOR=1.911;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:33:453,33,0 2 223339183 . G C 140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.80;ReadPosRankSum=1.260;SB=0.00;SOR=0.551;VQSLOD=8.37;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:12:99:169,0,203 2 223423362 rs4674664 A G 3201.82 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;SB=-1.901e+03;SOR=0.775;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:3231,244,0 2 223436607 rs7185 C T 1693.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-8.080e+02;SOR=1.118;VQSLOD=7.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1722,132,0 2 223436860 rs3768976 A G 185.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=2.189;SB=0.00;SOR=1.085;VQSLOD=9.47;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,6:10:99:214,0,113 2 223493435 rs2019357 G A 675.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.081;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.071;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=0.107;SB=-3.300e+02;SOR=1.022;VQSLOD=7.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,26:68:99:704,0,1114 2 223493440 rs34167083 G A 734.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=2.012;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=-0.504;SB=-3.490e+02;SOR=0.997;VQSLOD=7.25;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,28:70:99:763,0,1070 2 223499077 rs13410038 C T 439.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.718;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=2.170;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=0.199;SB=-9.001e+01;SOR=0.252;VQSLOD=10.28;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,17:31:99:468,0,443 2 223520905 rs2166652 G C 1198.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.649;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=3.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=-0.614;SB=-4.210e+02;SOR=0.397;VQSLOD=9.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,42:93:99:1227,0,1509 2 223520978 rs2044537 A G 452.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.241;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=2.222;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.929;SB=-7.301e+01;SOR=0.293;VQSLOD=10.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,15:31:99:481,0,497 2 223559089 rs1868024 T C 912.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.584;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.093;HaplotypeScore=2.7787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=0.745;SB=-2.320e+02;SOR=0.460;VQSLOD=10.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,33:74:99:941,0,1183 2 223781017 rs60362808 AT A 910.73 PASS AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.62;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.02;RPA=9,8;RU=T;SB=-2.500e+02;SOR=2.115;STR;VQSLOD=5.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:99:948,105,0 2 223785504 rs6739824 T C 832.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.57;SB=-4.276e+01;SOR=4.892;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:66:861,66,0 2 223785740 rs6756323 A G 2369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7351;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.62;SB=-1.192e+03;SOR=1.096;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:81:99:2398,178,0 2 223785846 rs6728234 G A 819.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.16;SB=-1.781e+02;SOR=2.494;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:848,66,0 2 223787559 rs11891410 G A 2116.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.22;SB=-1.078e+03;SOR=1.319;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2145,157,0 2 223787691 rs10932978 G A 911.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.53;SB=-4.620e+02;SOR=0.846;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:75:940,75,0 2 223799207 rs935030 C T 763.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.72;SB=-3.976e+01;SOR=4.804;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:792,60,0 2 223806189 . C CTT 1477.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.195;DP=77;ExcessHet=3.0103;FS=1.872;MLEAC=2;MLEAF=1.00;MQ=61.10;MQ0=0;MQRankSum=1.893;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.05;RPA=4,6;RU=T;ReadPosRankSum=1.582;SB=-6.970e+02;SOR=0.767;STR;VQSLOD=0.373;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:6,53:77:87:1515,87,0 2 223917812 rs10201907 T C 951.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.898;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=3.480;HaplotypeScore=2.9859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-0.980;SB=-2.920e+02;SOR=1.190;VQSLOD=7.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,35:72:99:980,0,1089 2 223918080 rs10189762 C G 588.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=0.011;SB=-3.430e+02;SOR=0.610;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:23,24:47:99:617,0,606 2 224569668 rs11678024 C T 56.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.831;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.37;ReadPosRankSum=-0.085;SB=-3.401e+01;SOR=0.223;VQSLOD=9.17;culprit=QD GT:AD:DP:GQ:PL 0/1:10,3:13:85:85,0,311 2 224569899 rs1866246 C T 437.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.985;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=1.004;SB=-2.350e+02;SOR=0.569;VQSLOD=9.96;culprit=FS GT:AD:DP:GQ:PL 0/1:18,19:37:99:466,0,469 2 224569975 rs1866247 A C 291.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.086;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=-0.409;SB=-3.501e+01;SOR=0.804;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:320,0,286 2 224629876 . C CCATCAT 682.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;DP=21;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.96;RPA=7,9;RU=CAT;ReadPosRankSum=1.401;SB=-2.480e+02;SOR=0.141;STR;VQSLOD=8.23;culprit=SOR GT:AD:DP:GQ:PL 0/1:9,9:21:99:720,0,681 2 224637967 rs16865186 A G 379.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.961;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.04;ReadPosRankSum=1.392;SB=-1.990e+02;SOR=0.567;VQSLOD=8.91;culprit=FS GT:AD:DP:GQ:PL 0/1:27,15:42:99:408,0,699 2 224640497 rs76026027 G A 427.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.782;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.845;HaplotypeScore=2.6694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-1.358;SB=-6.600e+01;SOR=1.547;VQSLOD=5.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,16:33:99:456,0,442 2 224702305 rs3738961 G C 107.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.358;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=-0.462;SB=-6.800e+01;SOR=0.269;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:136,0,176 2 224743373 rs571111 C T 758.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.239;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.563;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=2.332;SB=-2.990e+02;SOR=0.399;VQSLOD=9.44;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:24,27:51:99:787,0,613 2 224743591 rs602675 C T 751.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-1.583e+02;SOR=2.494;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:780,60,0 2 224744701 rs516849 A G 2131.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.20;SB=-1.122e+03;SOR=1.257;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2160,154,0 2 224749577 . T TTC 269.74 PASS AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=64.19;MQ0=0;QD=29.97;SB=-6.597e+01;SOR=2.093;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,9:10:27:307,27,0 2 224758906 rs625150 C T 3558.77 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.95;SB=-9.340e+02;SOR=2.531;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,108:108:99:3587,262,0 2 224760494 rs597349 G A 1395.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.08;SB=-6.720e+02;SOR=1.426;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1424,102,0 2 224760575 rs552854 A G 656.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-1.245e+02;SOR=3.056;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:51:685,51,0 2 224763816 rs530065 C T 1651.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.59;SB=-5.060e+02;SOR=2.303;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1680,129,0 2 224765755 rs5839028 TA T 231.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;DB;DP=15;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.72;MQ0=0;MQRankSum=0.667;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.45;RPA=11,10;RU=A;ReadPosRankSum=1.010;SB=-4.603e+01;SOR=1.942;STR;VQSLOD=0.238;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,12:15:44:269,0,44 2 224765894 rs604990 G A 2357.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-1.036e+03;SOR=1.519;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2386,178,0 2 224777094 rs541712 T C 2066.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.93;SB=-9.010e+02;SOR=1.842;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2095,162,0 2 224777105 rs3841657 G GTGAT 4033.73 PASS AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.24;RPA=1,2;RU=TGAT;SB=-9.340e+02;SOR=2.468;STR;VQSLOD=5.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:68:99:4071,175,0 2 224822043 rs3738960 C G 192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.725;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=1.335;SB=-3.500e+01;SOR=0.582;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:221,0,272 2 224842150 rs7597833 T C 280.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.431;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.274;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=-0.044;SB=-1.766e+00;SOR=2.147;VQSLOD=6.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,10:18:99:309,0,228 2 224856650 rs6712954 G A 2030.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;DB;DP=180;Dels=0.00;ExcessHet=3.0103;FS=6.364;HaplotypeScore=6.3238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=0.742;SB=-1.149e+03;SOR=0.625;VQSLOD=5.00;culprit=DP GT:AD:DP:GQ:PL 0/1:99,81:180:99:2059,0,2576 2 224862700 rs36034130 C A 1124.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.331;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=2.090;HaplotypeScore=3.7994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=-0.178;SB=-5.310e+02;SOR=1.072;VQSLOD=7.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,44:71:99:1153,0,725 2 224862821 rs3795879 C T 1295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.807;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=1.391;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.52;ReadPosRankSum=1.453;SB=-5.630e+02;SOR=0.866;VQSLOD=6.62;culprit=QD GT:AD:DP:GQ:PL 0/1:102,50:152:99:1324,0,2778 2 224862842 rs12457 A G 1373.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.177;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=3.055;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.64;ReadPosRankSum=-0.711;SB=-5.650e+02;SOR=1.007;VQSLOD=6.62;culprit=QD GT:AD:DP:GQ:PL 0/1:103,56:159:99:1402,0,2811 2 224863090 rs10170379 C T 855.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.429;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=-0.116;SB=-1.440e+02;SOR=0.933;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:35,31:66:99:884,0,1044 2 224866387 rs12138 G A 807.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.345;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-0.253;SB=-1.980e+02;SOR=0.730;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:38,30:68:99:836,0,960 2 224866576 rs12436 C A 1643.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.356;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=1.437;HaplotypeScore=4.4608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=1.094;SB=-7.290e+02;SOR=0.525;VQSLOD=8.23;culprit=DP GT:AD:DP:GQ:PL 0/1:76,64:140:99:1672,0,1868 2 224866707 rs200798858 T C 244.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.067;HaplotypeScore=2.9990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.13;ReadPosRankSum=0.234;SB=-9.732e-01;SOR=1.981;VQSLOD=4.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,9:22:99:273,0,372 2 224866711 rs138102254 CCAGAT C 304.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.876;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.16;ReadPosRankSum=3.115;SB=-3.300e+01;SOR=0.495;VQSLOD=7.15;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:10,8:18:99:342,0,567 2 225339191 rs370870088 T TAGTAA 778.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.198;DB;DP=23;ExcessHet=3.0103;FS=6.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.31;ReadPosRankSum=1.334;SB=-5.150e-01;SOR=2.833;VQSLOD=4.28;culprit=FS GT:AD:DP:GQ:PL 0/1:13,10:23:99:816,0,930 2 225376032 rs6743816 G C 272.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.908;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.714;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=0.805;SB=-6.400e+01;SOR=1.075;VQSLOD=7.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,11:26:99:301,0,477 2 225378382 rs3830376 ATAAT A 319.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQ0=0;MQRankSum=1.468;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-0.040;SB=-2.103e+01;SOR=0.963;VQSLOD=3.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,7:20:99:357,0,867 2 225649420 rs112606595 T A 1206.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.052;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=1.961;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=-0.590;SB=-6.410e+02;SOR=1.038;VQSLOD=7.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,45:75:99:1235,0,807 2 225659728 rs113265459 G A 1467.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.566;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-0.516;SB=-6.800e+02;SOR=0.730;VQSLOD=8.69;culprit=FS GT:AD:DP:GQ:PL 0/1:54,58:112:99:1496,0,1392 2 225665074 rs1560859 G A 718.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=0.00;SOR=6.091;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:747,60,0 2 225719571 . G GCCAA 565.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;DP=34;ExcessHet=3.0103;FS=5.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.26;RPA=11,12;RU=CCAA;ReadPosRankSum=-0.137;SB=-5.150e-01;SOR=2.235;STR;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 0/1:20,12:34:99:603,0,1099 2 225740630 . G A 1335.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.378;DP=94;Dels=0.00;ExcessHet=3.0103;FS=3.409;HaplotypeScore=3.9319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.21;ReadPosRankSum=-0.383;SB=-3.010e+02;SOR=1.162;VQSLOD=6.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,50:94:99:1364,0,1197 2 226273490 rs2048935 T C 653.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.97;SB=-3.876e+01;SOR=4.407;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:682,51,0 2 226273689 rs2048936 T C 3367.77 PASS AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6203;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.54;SB=-2.102e+03;SOR=0.914;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,118:118:99:3396,253,0 2 226447735 rs3828256 C T 1292.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.893;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=1.632;HaplotypeScore=2.8270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=1.531;SB=-6.540e+02;SOR=0.544;VQSLOD=9.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,52:104:99:1321,0,1488 2 226447844 rs6436570 G A 317.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.401;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=1.882;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=0.219;SB=-1.000e+02;SOR=0.338;VQSLOD=10.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,13:27:99:346,0,421 2 226491770 rs3748993 A C 1135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.662;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=0.892;SB=-6.060e+02;SOR=0.635;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:68,48:116:99:1164,0,1650 2 226516429 rs3791734 A G 477.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.478;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.023;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.70;ReadPosRankSum=0.593;SB=-8.497e+01;SOR=0.160;VQSLOD=9.66;culprit=SOR GT:AD:DP:GQ:PL 0/1:11,16:27:99:506,0,357 2 227773466 rs3820928 T C 2071.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.18;SB=-8.360e+02;SOR=1.745;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2100,150,0 2 227779191 rs3820927 C A 3730.77 PASS AC=2;AF=1.00;AN=2;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=-2.066e+03;SOR=0.871;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,120:120:99:3759,280,0 2 227807202 rs6436641 G T 1138.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.97;SB=-3.870e+02;SOR=2.073;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:84:1167,84,0 2 227872182 rs2228557 G A 3589.77 PASS AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.1973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.42;SB=-1.872e+03;SOR=1.160;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,122:122:99:3618,262,0 2 227872995 rs2228555 T C 2167.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.90;SB=-1.029e+03;SOR=1.402;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2196,157,0 2 227873028 rs13419076 A G 1598.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-6.110e+02;SOR=1.981;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1627,117,0 2 227874957 rs4423583 C T 1624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-6.790e+02;SOR=1.697;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1653,126,0 2 227877037 rs10188770 G A 1154.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SB=-6.920e+02;SOR=0.793;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:87:1183,87,0 2 227886773 rs3752895 A G 2205.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.92;SB=-9.080e+02;SOR=1.508;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2234,166,0 2 227886925 rs3752896 C T 2080.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.01;SB=-8.000e+02;SOR=1.646;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2109,160,0 2 227892619 rs2228556 C T 1806.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=-6.970e+02;SOR=1.609;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1835,135,0 2 227892720 rs2229813 C T 1722.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8657;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-7.480e+02;SOR=1.412;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1751,129,0 2 227895125 rs1917127 A G 1058.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-4.470e+02;SOR=1.675;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:78:1087,78,0 2 227896652 rs13423714 C G 1595.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-4.190e+02;SOR=2.448;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1624,117,0 2 227896886 rs2229812 C T 4762.77 PASS AC=2;AF=1.00;AN=2;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.53;SB=-2.653e+03;SOR=1.179;VQSLOD=4.25;culprit=DP GT:AD:DP:GQ:PL 1/1:0,173:173:99:4791,349,0 2 227896976 rs10203363 C T 2756.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=-7.510e+02;SOR=2.387;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2785,211,0 2 227897076 rs10179756 A G 749.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-2.411e+02;SOR=1.802;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:57:778,57,0 2 227912331 rs2272200 G A 624.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.676;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.941;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=0.294;SB=-4.800e+01;SOR=1.426;VQSLOD=6.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,21:38:99:653,0,508 2 227914655 rs2272203 C G 210.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=-0.557;SB=-1.765e+00;SOR=1.828;VQSLOD=8.39;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:239,0,208 2 227914975 rs2251223 T G 308.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.872;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.75;ReadPosRankSum=-0.425;SB=-8.297e+01;SOR=0.446;VQSLOD=8.74;culprit=FS GT:AD:DP:GQ:PL 0/1:3,10:13:76:337,0,76 2 227915832 rs1800517 G A 963.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.140;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=1.960;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-1.289;SB=-5.840e+02;SOR=0.434;VQSLOD=10.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,39:73:99:992,0,751 2 227920474 rs1320406 G A 242.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.026;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.67;ReadPosRankSum=-0.565;SB=0.00;SOR=1.179;VQSLOD=10.17;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:271,0,145 2 227921977 rs4536647 A G 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=-1.140;SB=-3.101e+01;SOR=0.446;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:166,0,233 2 227922015 rs4566357 A G 325.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.391;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-0.680;SB=-6.900e+01;SOR=0.784;VQSLOD=10.39;culprit=FS GT:AD:DP:GQ:PL 0/1:12,13:25:99:354,0,339 2 227922104 rs7567789 T C 720.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.168;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=4.740;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=0.460;SB=-2.810e+02;SOR=1.509;VQSLOD=6.04;culprit=FS GT:AD:DP:GQ:PL 0/1:15,26:41:99:749,0,381 2 227922109 rs7567796 T A 664.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.253;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=0.635;SB=-3.400e+02;SOR=1.068;VQSLOD=7.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,28:44:99:693,0,477 2 227922454 rs2141829 G A 343.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.663;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=0.687;SB=-1.050e+02;SOR=0.551;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 0/1:16,14:30:99:372,0,408 2 227922470 rs2141828 T C 256.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.066;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=0.297;SB=-6.600e+01;SOR=0.892;VQSLOD=10.18;culprit=FS GT:AD:DP:GQ:PL 0/1:12,10:22:99:285,0,304 2 227927189 rs35717623 GT G 447.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;DB;DP=41;ExcessHet=3.0103;FS=3.408;MLEAC=1;MLEAF=0.500;MQ=60.26;MQ0=0;MQRankSum=0.777;POSITIVE_TRAIN_SITE;QD=11.78;RPA=13,12;RU=T;ReadPosRankSum=-0.169;SB=-1.390e+02;SOR=0.302;STR;VQSLOD=0.118;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,25:41:99:485,0,201 2 227942951 rs7588113 T C 383.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.408;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=0.422;SB=-4.276e+01;SOR=0.693;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:5,12:17:99:412,0,144 2 227947053 rs10187611 C G 302.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.52;ReadPosRankSum=-1.922;SB=0.00;SOR=2.494;VQSLOD=6.39;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:2,9:11:47:331,0,47 2 227954599 rs2229814 G A 894.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=8.900;HaplotypeScore=1.5317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=0.232;SB=-3.820e+02;SOR=1.332;VQSLOD=5.79;culprit=FS GT:AD:DP:GQ:PL 0/1:27,34:61:99:923,0,741 2 227966148 rs16823202 C T 1040.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.74;SB=-3.830e+02;SOR=1.885;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:78:1069,78,0 2 227966298 . T TA 1316.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;MQRankSum=0.217;POSITIVE_TRAIN_SITE;QD=22.70;RPA=11,12;RU=A;ReadPosRankSum=-0.388;SB=-6.010e+02;SOR=0.662;STR;VQSLOD=3.41;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:5,53:64:42:1354,42,0 2 227967601 rs11274738 ACAATATTTCAGCAATAGGGAAAG A 4753.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=1.514;SB=-1.204e+03;SOR=0.671;VQSLOD=8.58;culprit=FS GT:AD:DP:GQ:PL 0/1:39,20:80:99:4791,0,8365 2 227967830 rs10707643 GA G 327.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;DB;DP=51;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.12;RPA=11,10;RU=A;ReadPosRankSum=0.692;SB=-1.600e+02;SOR=0.626;STR;VQSLOD=6.19;culprit=QD GT:AD:DP:GQ:PL 0/1:27,19:51:99:365,0,589 2 227968553 rs7602059 A C 470.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.926;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=-1.345;SB=-1.020e+02;SOR=0.770;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:15,16:31:99:499,0,416 2 227973095 rs7600536 A T 241.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.032;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.233;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=-1.146;SB=-7.597e+01;SOR=0.105;VQSLOD=9.26;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,9:16:99:270,0,229 2 227973410 rs55741079 C A 509.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.317;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=0.502;SB=-2.780e+02;SOR=0.489;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:10,17:27:99:538,0,299 2 227973623 rs12475686 A G 797.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.321;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=0.227;SB=-3.630e+02;SOR=0.693;VQSLOD=10.16;culprit=FS GT:AD:DP:GQ:PL 0/1:23,28:51:99:826,0,583 2 227974113 rs6436654 A G 787.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.51;SB=-2.181e+02;SOR=1.893;VQSLOD=7.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:60:816,60,0 2 227976226 rs4519512 T C 367.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.552;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=8.953;HaplotypeScore=2.6421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=-2.052;SB=-1.363e+02;SOR=0.039;VQSLOD=6.09;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:10,14:24:99:396,0,266 2 227976230 rs4306711 C A 344.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.988;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=9.432;HaplotypeScore=4.4074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=-2.022;SB=-1.633e+02;SOR=0.039;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 0/1:10,14:24:99:373,0,340 2 227985892 rs185491716 G C 434.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-1.209;SB=-1.780e+02;SOR=0.941;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 0/1:16,19:35:99:463,0,461 2 228102550 . C T 439.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.534;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.45;ReadPosRankSum=2.667;SB=-1.490e+02;SOR=0.929;VQSLOD=4.06;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:39,20:59:99:468,0,1075 2 228104760 rs7579991 C T 1785.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.27;SB=-8.430e+02;SOR=1.316;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1814,135,0 2 228109626 rs67073195 T TG 1060.73 PASS AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.86;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.04;SB=-4.290e+02;SOR=1.270;VQSLOD=5.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:25:72:1098,72,0 2 228109784 rs6750210 C T 410.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-8.097e+01;SOR=2.833;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:439,33,0 2 228111435 rs10178458 T C 1799.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.03;SB=-1.016e+03;SOR=0.762;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1828,138,0 2 228111600 rs10168566 G T 770.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-1.881e+02;SOR=2.494;VQSLOD=6.59;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,24:24:60:799,60,0 2 228111604 rs10168567 G T 624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-1.105e+02;SOR=3.056;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:51:653,51,0 2 228112186 rs4321358 A G 4358.77 PASS AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7122;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.82;SB=-1.931e+03;SOR=1.204;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,137:137:99:4387,316,0 2 228112439 rs12612699 C T 270.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.832;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=0.206;SB=0.00;SOR=0.941;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:299,0,194 2 228113175 rs6436669 A G 1383.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.44;SB=-8.810e+02;SOR=0.823;VQSLOD=7.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1412,102,0 2 228118156 rs55997063 T A 1266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.293;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=1.071;SB=-7.800e+02;SOR=0.730;VQSLOD=8.06;culprit=FS GT:AD:DP:GQ:PL 0/1:80,53:133:99:1295,0,2096 2 228118403 rs12621551 T G 1445.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-4.410e+02;SOR=2.303;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1474,108,0 2 228124702 rs4332918 A G 632.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.30;SB=-2.940e+02;SOR=1.022;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:51:661,51,0 2 228128540 rs10205042 C T 2826.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-1.328e+03;SOR=1.295;VQSLOD=7.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2855,211,0 2 228131912 rs10933174 C A 1159.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.14;SB=-2.401e+02;SOR=2.964;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:90:1188,90,0 2 228135631 rs28381984 C T 2851.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4929;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.02;SB=-1.756e+03;SOR=0.848;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:2880,208,0 2 228142038 rs59353048 GAA G 365.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.25;RPA=18,16;RU=A;ReadPosRankSum=-0.248;SB=-3.819e+01;SOR=2.448;STR;VQSLOD=6.91;culprit=FS GT:AD:DP:GQ:PL 0/1:6,13:19:3:324,0,3 2 228144706 rs6729152 G T 1834.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.36;SB=-3.200e+02;SOR=3.383;VQSLOD=7.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1863,147,0 2 228145543 rs6436671 C T 2203.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.39;SB=-8.240e+02;SOR=1.574;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2232,169,0 2 228146991 rs111486503 AATAT A,AAT 750.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.686;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.90;MQ0=0;MQRankSum=0.474;POSITIVE_TRAIN_SITE;QD=34.12;RPA=13,11,12;RU=AT;ReadPosRankSum=0.237;SB=-1.228e+02;SOR=2.494;STR;VQSLOD=2.37;culprit=MQRankSum GT:AD:DP:GQ:PL 1/2:1,8,13:24:99:788,419,489,214,0,190 2 228149107 rs6436672 A G 821.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.35;SB=-3.210e+02;SOR=1.609;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:63:850,63,0 2 228154095 rs7593281 C T 438.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.76;SB=0.00;SOR=5.136;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:467,36,0 2 228158418 rs7569636 T C 4534.77 PASS AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.64;SB=-1.685e+03;SOR=1.758;VQSLOD=5.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,148:148:99:4563,328,0 2 228158648 rs7608999 G C 1198.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.24;SB=0.00;SOR=6.869;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:90:1227,90,0 2 228159063 rs6436675 T C 1112.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.07;SB=-3.510e+02;SOR=2.012;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:84:1141,84,0 2 228159660 rs35803812 GT G 937.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.91;MQ0=0;MQRankSum=1.043;POSITIVE_TRAIN_SITE;QD=14.21;RPA=16,15;RU=T;ReadPosRankSum=-1.177;SB=-2.441e+02;SOR=0.560;STR;VQSLOD=3.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,52:68:99:975,0,138 2 228169632 rs11680670 C T 2198.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.41;SB=-1.037e+03;SOR=1.329;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2227,166,0 2 228173636 rs77964815 A G 747.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.806;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.382;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-0.084;SB=-2.190e+02;SOR=1.061;VQSLOD=7.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,28:59:99:776,0,830 2 228174175 rs34134749 TACAA T 2866.73 PASS AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=-8.570e+02;SOR=1.845;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:43:99:2904,123,0 2 228194480 rs3211097 A T 1093.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.929;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.933;SB=-4.200e+02;SOR=0.745;VQSLOD=8.10;culprit=FS GT:AD:DP:GQ:PL 0/1:49,39:88:99:1122,0,1356 2 228194481 rs3211098 G T 1056.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.830;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.933;SB=-4.240e+02;SOR=0.745;VQSLOD=8.82;culprit=FS GT:AD:DP:GQ:PL 0/1:49,39:88:99:1085,0,1401 2 228194570 rs6706656 G A 3630.77 PASS AC=2;AF=1.00;AN=2;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3592;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=-2.336e+03;SOR=0.743;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,121:121:99:3659,268,0 2 228194639 rs11384091 T TAA,TA 1492.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.907;DB;DP=77;ExcessHet=3.0103;FS=2.353;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.88;RPA=11,13,12;RU=A;ReadPosRankSum=0.161;SB=-3.280e+02;SOR=2.007;STR;VQSLOD=5.17;culprit=MQRankSum GT:AD:DP:GQ:PL 1/2:5,28,27:77:99:1530,544,563,642,0,581 2 228197368 rs4500938 A G 740.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.21;SB=-1.383e+02;SOR=2.833;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:57:769,57,0 2 228204929 rs4420693 C T 643.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=-1.503e+02;SOR=2.419;VQSLOD=7.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:51:672,51,0 2 228204982 rs4442987 C T 1076.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.76;SB=-3.930e+02;SOR=1.885;VQSLOD=7.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:81:1105,81,0 2 228207625 rs6738078 G A 1136.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-3.440e+02;SOR=2.179;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:87:1165,87,0 2 228220528 rs12478005 T C 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.743;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.40;ReadPosRankSum=-0.392;SB=-6.900e+01;SOR=0.368;VQSLOD=8.92;culprit=QD GT:AD:DP:GQ:PL 0/1:10,7:17:99:171,0,281 2 228243905 rs7574414 G A 1011.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.789;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=-1.627;SB=-5.230e+02;SOR=0.834;VQSLOD=7.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,42:95:99:1040,0,1392 2 228243992 rs76384985 C T 632.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.521;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=4.510;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=1.633;SB=-1.170e+02;SOR=1.510;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 0/1:33,21:54:99:661,0,797 2 228399480 rs7588620 T C 1084.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.659;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.949;HaplotypeScore=4.3903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=1.832;SB=-3.160e+02;SOR=0.532;VQSLOD=9.59;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:44,42:86:99:1113,0,1176 2 228416712 rs13426457 A G 1565.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.542;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-0.230;SB=-8.970e+02;SOR=0.711;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 0/1:68,64:132:99:1594,0,1703 2 228476253 rs2138402 C G 1146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.579;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.797;HaplotypeScore=1.5592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-0.522;SB=-5.440e+02;SOR=0.805;VQSLOD=7.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,42:91:99:1175,0,1283 2 228476569 rs2063852 G C 254.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.102;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=0.864;SB=-1.320e+02;SOR=0.711;VQSLOD=9.98;culprit=FS GT:AD:DP:GQ:PL 0/1:16,11:27:99:283,0,336 2 228477814 rs7586824 G C 3233.06 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6812;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.33;SB=-1.173e+03;SOR=1.839;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:3261,235,0 2 228493211 rs28739019 G A 1689.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=2.091;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-1.771;SB=-8.150e+02;SOR=0.916;VQSLOD=6.81;culprit=DP GT:AD:DP:GQ:PL 0/1:82,67:149:99:1718,0,1960 2 228493338 rs6755667 C T 1201.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.867;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.156;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=-0.765;SB=-2.630e+02;SOR=0.522;VQSLOD=9.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,43:76:99:1230,0,1014 2 228493339 rs6727022 A G 1189.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.719;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=1.169;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=-0.545;SB=-2.900e+02;SOR=0.499;VQSLOD=9.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,42:75:99:1218,0,994 2 228513181 rs6436721 G A 472.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=-0.541;SB=-1.950e+02;SOR=0.922;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:19,19:38:99:501,0,462 2 228513217 rs6436722 C T 249.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.346;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.350;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-0.696;SB=-1.100e+02;SOR=0.180;VQSLOD=10.03;culprit=SOR GT:AD:DP:GQ:PL 0/1:9,10:19:99:278,0,322 2 228560800 rs11334205 GA G 1381.73 PASS AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.63;RPA=8,7;RU=A;SB=-5.040e+02;SOR=1.390;STR;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:53:99:1419,150,0 2 228560834 . C CT 591.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;DP=49;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.86;RPA=3,4;RU=T;ReadPosRankSum=0.110;SB=-1.990e+02;SOR=1.148;STR;VQSLOD=6.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,22:49:99:629,0,694 2 228565656 rs11694828 G A 1049.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.148;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=3.208;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-1.678;SB=-4.810e+02;SOR=0.408;VQSLOD=9.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,43:83:99:1078,0,1070 2 228624464 rs79140316 C T 160.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=-0.210;SB=-6.601e+01;SOR=1.022;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:64:189,0,64 2 228734730 . C A 127.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.139;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.62;ReadPosRankSum=-0.352;SB=0.00;SOR=0.551;VQSLOD=8.54;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:156,0,207 2 228750239 rs4973445 G T 650.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.519;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=2.892;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=0.910;SB=-2.390e+02;SOR=0.296;VQSLOD=10.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,26:47:99:679,0,586 2 228756144 rs58627365 T C 480.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.645;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=0.328;SB=0.00;SOR=1.270;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:9,15:24:99:509,0,276 2 228758580 rs16824157 G C 1019.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.399;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=0.554;SB=-4.470e+02;SOR=0.698;VQSLOD=8.55;culprit=FS GT:AD:DP:GQ:PL 0/1:58,41:99:99:1048,0,1591 2 228767618 rs2949014 T C 413.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.95;SB=0.00;SOR=4.977;VQSLOD=7.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:442,33,0 2 228767631 rs2946931 G T 466.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.99;SB=0.00;SOR=5.283;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:495,39,0 2 228776996 rs3748862 T C 2569.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.85;SB=-1.363e+02;SOR=5.196;VQSLOD=5.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2598,199,0 2 228783410 rs16824212 G T 291.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.399;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.318;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=0.670;SB=-2.901e+01;SOR=1.473;VQSLOD=7.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,11:21:99:320,0,275 2 228783447 rs16824214 G C 577.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.637;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=-1.067;SB=-2.110e+02;SOR=0.960;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:12,21:33:99:606,0,305 2 228783479 rs1533960 C A 336.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.078;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.48;ReadPosRankSum=0.522;SB=-1.760e+02;SOR=0.686;VQSLOD=8.82;culprit=QD GT:AD:DP:GQ:PL 0/1:29,16:45:99:365,0,766 2 228788722 rs16824231 T C 999.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=2.952;HaplotypeScore=6.1293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.677;SB=-5.270e+02;SOR=0.681;VQSLOD=6.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,43:81:99:1028,0,940 2 228855958 rs16824284 T C 3122.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=11.100;DB;DP=238;Dels=0.00;ExcessHet=3.0103;FS=3.667;HaplotypeScore=3.4870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-1.186;SB=-1.825e+03;SOR=0.485;VQSLOD=5.87;culprit=DP GT:AD:DP:GQ:PL 0/1:116,121:238:99:3151,0,3128 2 228859977 rs139001039 G A 175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=0.069;SB=-4.276e+01;SOR=0.223;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:204,0,198 2 228882970 rs3828161 T C 2623.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.939;DB;DP=189;Dels=0.00;ExcessHet=3.0103;FS=0.539;HaplotypeScore=2.8919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=-1.928;SB=-1.367e+03;SOR=0.739;VQSLOD=7.34;culprit=DP GT:AD:DP:GQ:PL 0/1:86,103:189:99:2652,0,2289 2 228883029 rs3811515 A C 2349.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.032;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=1.285;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=-1.369;SB=-1.325e+03;SOR=0.583;VQSLOD=8.51;culprit=DP GT:AD:DP:GQ:PL 0/1:70,78:148:99:2378,0,1758 2 228883721 rs3811514 T C 4334.77 PASS AC=2;AF=1.00;AN=2;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-2.352e+03;SOR=0.768;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,137:137:99:4363,328,0 2 228886413 rs11292511 TG T 2671.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;DB;DP=118;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.500;MQ=60.09;MQ0=0;MQRankSum=0.822;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.84;RPA=2,1;RU=G;ReadPosRankSum=0.022;SB=-1.267e+03;SOR=0.779;STR;VQSLOD=0.381;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,71:118:99:2709,0,1731 2 228973383 rs67714256 A C 177.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.771;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=-0.791;SB=-4.076e+01;SOR=0.141;VQSLOD=9.65;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,7:15:99:206,0,267 2 228973660 rs7561798 A G 1014.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.177;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.150;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.20;ReadPosRankSum=0.737;SB=-3.540e+02;SOR=0.542;VQSLOD=9.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,37:59:99:1043,0,569 2 228973723 . C CT 107.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;DP=23;ExcessHet=3.0103;FS=3.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.99;RPA=12,13;RU=T;ReadPosRankSum=1.112;SB=-9.732e-01;SOR=2.303;STR;VQSLOD=3.96;culprit=QD GT:AD:DP:GQ:PL 0/1:10,8:23:99:145,0,199 2 228992763 rs6719186 G A 351.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.934;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=1.087;SB=-3.001e+01;SOR=1.292;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:8,13:21:99:380,0,235 2 228992850 rs6734166 T C 645.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-0.312;SB=-3.740e+02;SOR=0.616;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:26,27:53:99:674,0,672 2 228996637 rs4479423 G A 391.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.00;ReadPosRankSum=0.200;SB=-1.760e+02;SOR=0.514;VQSLOD=9.20;culprit=QD GT:AD:DP:GQ:PL 0/1:32,17:49:99:420,0,839 2 228996650 rs4353646 A G 515.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.602;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.21;ReadPosRankSum=-1.177;SB=-2.170e+02;SOR=0.593;VQSLOD=8.73;culprit=FS GT:AD:DP:GQ:PL 0/1:35,21:56:99:544,0,948 2 228996672 rs4585022 G A 634.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.060;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-2.647;SB=-2.950e+02;SOR=0.681;VQSLOD=7.99;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:36,27:63:99:663,0,1060 2 228996995 rs5013548 C T 780.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=1.956;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=0.711;SB=-3.670e+02;SOR=1.015;VQSLOD=7.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,34:74:99:809,0,902 2 228997009 rs66910205 C T 694.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.450;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.269;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=1.398;SB=-2.510e+02;SOR=1.104;VQSLOD=7.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,28:63:99:723,0,839 2 229035351 rs12618108 T G 809.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.018;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.289;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=0.451;SB=-3.160e+02;SOR=0.502;VQSLOD=8.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,29:45:99:838,0,410 2 229035357 rs4630759 T A 283.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.511;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.595;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.09;ReadPosRankSum=0.768;SB=-4.500e+01;SOR=1.244;VQSLOD=5.84;culprit=QD GT:AD:DP:GQ:PL 0/1:28,12:40:99:312,0,779 2 229035442 rs4334483 A T 89.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.16;ReadPosRankSum=1.290;SB=0.00;SOR=0.330;VQSLOD=9.12;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:99:118,0,246 2 230045542 rs75509687 C G 275.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=25.07;SB=-8.097e+01;SOR=2.494;VQSLOD=5.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:304,24,0 2 230045545 rs78860008 T C 290.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=26.43;SB=-7.397e+01;SOR=2.494;VQSLOD=4.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:319,24,0 2 230045554 rs62190427 G C 294.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=26.80;SB=-7.497e+01;SOR=2.494;VQSLOD=4.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:323,24,0 2 230045564 rs62190428 T C 289.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=28.98;SB=-7.497e+01;SOR=2.303;VQSLOD=5.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:318,24,0 2 230045568 rs62190429 T C 283.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=28.38;SB=-7.497e+01;SOR=2.303;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:312,24,0 2 230092889 rs1419944 C T 1083.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.96;SB=-1.981e+02;SOR=3.056;VQSLOD=5.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:84:1112,84,0 2 230092950 rs1419945 C T 452.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.83;SB=0.00;SOR=5.283;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:481,39,0 2 230096587 rs1226982 C T 1523.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.42;SB=-3.170e+02;SOR=3.033;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1552,117,0 2 230135527 rs1227013 C T 1738.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.04;SB=-6.770e+02;SOR=1.888;VQSLOD=5.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1767,129,0 2 230135711 . G GC 3392.73 PASS AC=2;AF=1.00;AN=2;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.33;RPA=1,2;RU=C;SB=-1.110e+03;SOR=1.673;STR;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:77:99:3430,226,0 2 230411518 rs369516727 TAGAC T 429.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.88;MQ0=0;MQRankSum=1.036;QD=20.14;RPA=7,6;RU=AGAC;ReadPosRankSum=0.154;SB=0.00;SOR=0.941;STR;VQSLOD=2.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,9:17:99:467,0,373 2 230453214 . G GA 529.73 PASS AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.22;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.49;RPA=10,11;RU=A;SB=-1.751e+02;SOR=1.721;STR;VQSLOD=5.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:24:60:567,60,0 2 230666898 rs10432554 A G 505.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.023;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.830;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=-0.270;SB=-6.600e+01;SOR=1.201;VQSLOD=7.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,17:33:99:534,0,449 2 230668968 rs4972915 G A 612.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.039;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.181;HaplotypeScore=2.7232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=-0.942;SB=-2.160e+02;SOR=0.402;VQSLOD=9.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,25:58:99:641,0,825 2 230723777 rs544480 G C 2192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.010;DB;DP=162;Dels=0.00;ExcessHet=3.0103;FS=8.237;HaplotypeScore=3.5649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.854;SB=-1.214e+03;SOR=0.333;VQSLOD=5.69;culprit=FS GT:AD:DP:GQ:PL 0/1:76,86:162:99:2221,0,2161 2 230841074 rs499449 C T 508.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.935;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=7.785;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.42;ReadPosRankSum=-0.643;SB=-2.560e+02;SOR=0.852;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 0/1:32,22:54:99:537,0,836 2 230875311 rs11675143 G A 903.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.572;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=1.651;SB=-2.900e+02;SOR=0.563;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:36,36:72:99:932,0,1060 2 230914766 rs6748654 T C 1342.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.93;SB=0.00;SOR=7.054;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:99:1371,99,0 2 231025545 rs1549574 T G 484.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.36;SB=-3.677e+01;SOR=3.767;VQSLOD=5.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:513,39,0 2 231036860 rs3948463 C T 1822.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.193;DB;DP=135;Dels=0.00;ExcessHet=3.0103;FS=0.644;HaplotypeScore=1.8997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=1.499;SB=-1.197e+03;SOR=0.832;VQSLOD=7.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,75:135:99:1851,0,1631 2 231037616 rs35495464 A G 1548.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=11.451;DB;DP=161;Dels=0.00;ExcessHet=3.0103;FS=0.606;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=-0.156;SB=-7.980e+02;SOR=0.760;VQSLOD=7.60;culprit=DP GT:AD:DP:GQ:PL 0/1:98,63:161:99:1577,0,2371 2 231042276 rs1135791 A G 233.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.49;ReadPosRankSum=-0.369;SB=-1.670e+02;SOR=0.693;VQSLOD=9.58;culprit=QD GT:AD:DP:GQ:PL 0/1:24,12:36:99:262,0,603 2 231048200 rs139374219 GAGA G 224.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.43;RPA=2,1;RU=AGA;ReadPosRankSum=-0.880;SB=-5.400e+01;SOR=0.527;STR;VQSLOD=8.27;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:262,0,330 2 231048362 . C T 297.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.213;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.451;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.61;ReadPosRankSum=-0.893;SB=-1.430e+02;SOR=0.957;VQSLOD=5.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,12:31:99:326,0,514 2 231050569 rs2114591 G A 227.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=-1.313;SB=0.00;SOR=0.818;VQSLOD=10.19;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:256,0,212 2 231050715 rs3948464 A G 3133.77 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9589;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.49;SB=-1.910e+03;SOR=1.101;VQSLOD=6.37;culprit=DP GT:AD:DP:GQ:PL 1/1:0,114:114:99:3162,235,0 2 231065722 rs41309108 A T 1262.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.981;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=1.244;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=0.770;SB=-2.480e+02;SOR=1.018;VQSLOD=6.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,45:71:99:1291,0,672 2 231067568 rs182182647 G A 332.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.951;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.291;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=-0.462;SB=-2.801e+01;SOR=1.445;VQSLOD=6.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,12:23:99:361,0,343 2 231067590 rs73000371 C T 191.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.460;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=-1.371;SB=0.00;SOR=1.022;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:220,0,167 2 231072709 rs1365776 C T 1498.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.29;SB=-9.470e+02;SOR=1.047;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1527,111,0 2 231076032 rs3769837 G T 310.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.917;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=-0.532;SB=0.00;SOR=0.793;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:19:99:339,0,314 2 231076289 rs3820974 T G 690.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.034;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.209;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-0.721;SB=-2.400e+02;SOR=0.490;VQSLOD=9.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,26:53:99:719,0,802 2 231077110 rs9061 C T 1010.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.380;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=7.071;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=0.468;SB=-3.960e+02;SOR=1.609;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 0/1:26,37:63:99:1039,0,615 2 231077112 rs28930679 G A 541.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.712;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=5.383;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.60;ReadPosRankSum=-0.398;SB=-3.810e+02;SOR=0.223;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 0/1:37,26:63:99:570,0,1003 2 231077154 rs41309096 G A 567.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.596;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=2.116;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.73;ReadPosRankSum=0.570;SB=-3.210e+02;SOR=0.625;VQSLOD=6.00;culprit=QD GT:AD:DP:GQ:PL 0/1:42,23:65:99:596,0,1154 2 231077181 rs190186126 G C 499.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.493;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=3.939;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.19;ReadPosRankSum=0.537;SB=-1.550e+02;SOR=1.329;VQSLOD=6.19;culprit=QD GT:AD:DP:GQ:PL 0/1:42,19:61:99:528,0,1090 2 231077360 rs6749386 A G 1091.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-5.150e+02;SOR=1.044;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:84:1120,84,0 2 231077676 rs11556887 G A 701.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.722;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=5.993;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=0.606;SB=-3.630e+02;SOR=0.753;VQSLOD=6.13;culprit=FS GT:AD:DP:GQ:PL 0/1:21,28:49:99:730,0,527 2 231077725 rs1129411 A G 1477.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.98;SB=-8.820e+02;SOR=0.813;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1506,111,0 2 231077868 rs7601176 A G 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=1.831;SB=-1.765e+00;SOR=1.609;VQSLOD=8.59;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:166,0,206 2 231081384 rs7580900 T C 459.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.352;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=0.410;SB=0.00;SOR=1.179;VQSLOD=10.30;culprit=FS GT:AD:DP:GQ:PL 0/1:9,14:23:99:488,0,289 2 231081405 rs7580912 T C 463.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.148;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=2.965;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=-0.071;SB=-6.997e+01;SOR=0.180;VQSLOD=10.06;culprit=SOR GT:AD:DP:GQ:PL 0/1:11,17:28:99:492,0,371 2 231103185 rs2278197 A G 535.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.547;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=3.585;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=-1.086;SB=-1.430e+02;SOR=0.141;VQSLOD=9.29;culprit=SOR GT:AD:DP:GQ:PL 0/1:27,22:49:99:564,0,831 2 231106244 rs2288328 G C 406.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.314;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.189;HaplotypeScore=1.9134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=0.786;SB=-9.300e+01;SOR=1.312;VQSLOD=6.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,16:39:99:435,0,676 2 231110497 rs56246923 G A 952.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=3.148;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=0.801;SB=-4.480e+02;SOR=1.218;VQSLOD=7.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,40:77:99:981,0,991 2 231115524 rs72988209 A T 780.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.636;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=4.405;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=-1.577;SB=-4.600e+02;SOR=0.265;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:18,30:48:99:809,0,490 2 231149108 rs4972946 G A 809.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.99;SB=-4.980e+02;SOR=0.976;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:60:838,60,0 2 231157527 rs6739193 G A 791.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;SB=0.00;SOR=6.273;VQSLOD=8.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:820,66,0 2 231175763 rs78116662 G A 650.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=5;POSITIVE_TRAIN_SITE;QD=27.12;SB=-2.351e+02;SOR=1.609;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 1/1:2,22:24:54:679,54,0 2 231191756 rs2007304 C T 103.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.957;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.98;ReadPosRankSum=0.211;SB=-2.701e+01;SOR=1.329;VQSLOD=8.65;culprit=QD GT:AD:DP:GQ:PL 0/1:8,5:13:99:132,0,188 2 231223975 rs11678791 C T 156.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.510;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.71;ReadPosRankSum=-0.844;SB=0.00;SOR=0.255;VQSLOD=9.99;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:185,0,343 2 231226218 rs66605148 G GTCATGTGTAACCC 1570.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;DB;DP=32;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.345;SB=-3.520e+02;SOR=1.071;VQSLOD=7.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,11:32:99:1608,0,2740 2 231226488 rs11891724 C T 192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.044;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.43;ReadPosRankSum=-0.951;SB=-1.170e+02;SOR=0.467;VQSLOD=9.76;culprit=QD GT:AD:DP:GQ:PL 0/1:21,9:30:99:221,0,497 2 231248261 rs28497362 C T 445.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=2.944;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=0.760;SB=-1.850e+02;SOR=1.348;VQSLOD=7.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,18:37:99:474,0,485 2 231258150 rs7590429 C T 378.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.807;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=0.728;SB=-1.970e+02;SOR=0.914;VQSLOD=10.16;culprit=FS GT:AD:DP:GQ:PL 0/1:14,16:30:99:407,0,387 2 231327291 rs1649863 A G 4616.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DB;DP=158;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5802;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=29.22;ReadPosRankSum=0.384;SB=-2.522e+03;SOR=0.458;VQSLOD=4.35;culprit=DP GT:AD:DP:GQ:PL 1/1:1,157:158:99:4645,299,0 2 231331694 . A G 907.77 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.42;SB=-3.860e+02;SOR=1.382;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:69:936,69,0 2 231331701 . A AG 1184.73 PASS AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.60;RPA=2,3;RU=G;SB=-5.090e+02;SOR=1.071;STR;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:87:1222,87,0 2 231331799 rs1649869 T C 2273.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.95;SB=-9.970e+02;SOR=1.478;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2302,169,0 2 231331896 rs1050224 G A 3552.77 PASS AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.88;SB=-2.231e+03;SOR=0.709;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,123:123:99:3581,259,0 2 231337960 rs1615190 C T 1154.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.87;SB=-6.270e+02;SOR=1.022;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:90:1183,90,0 2 231406259 rs1678149 G A 362.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.86;SB=0.00;SOR=4.804;VQSLOD=5.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:391,30,0 2 231406680 rs836237 T C 1818.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=5.104;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=1.008;SB=-9.770e+02;SOR=1.010;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 0/1:64,76:140:99:1847,0,1699 2 231406846 rs10199013 G A 618.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.459;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=0.565;SB=0.00;SOR=1.284;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:12,20:32:99:647,0,384 2 231407342 rs10199349 C A 349.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.833;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=0.042;SB=0.00;SOR=1.292;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:7,12:19:99:378,0,224 2 231407372 rs864460 T C 478.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.502;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=8.913;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=0.284;SB=-1.651e+02;SOR=0.036;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 0/1:12,19:31:99:507,0,387 2 231407519 rs6717269 C T 998.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.608;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.779;HaplotypeScore=2.8242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=-0.774;SB=-6.370e+02;SOR=0.612;VQSLOD=9.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,43:97:99:1027,0,1433 2 231407663 rs9288668 C T 696.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.565;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=1.808;HaplotypeScore=10.2039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.66;ReadPosRankSum=1.208;SB=-3.720e+02;SOR=0.747;VQSLOD=6.22;culprit=QD GT:AD:DP:GQ:PL 0/1:61,30:91:99:725,0,1546 2 231407863 . G GA 226.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;RPA=1,2;RU=A;ReadPosRankSum=-0.488;SB=-1.764e+00;SOR=1.270;STR;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:264,0,383 2 231437810 rs1966975 T C 31.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.94;MQ0=0;MQRankSum=-1.335;POSITIVE_TRAIN_SITE;QD=2.89;ReadPosRankSum=0.000;SB=-2.204e+01;SOR=0.527;VQSLOD=3.59;culprit=QD GT:AD:DP:GQ:PL 0/1:9,2:11:60:60,0,197 2 231438097 rs55795378 A T 102.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.050;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.56;ReadPosRankSum=0.409;SB=-2.801e+01;SOR=1.022;VQSLOD=8.92;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:99:131,0,215 2 231438198 rs56007290 C T 138.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.275;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.760;HaplotypeScore=6.1212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.03;ReadPosRankSum=0.134;SB=-8.800e+01;SOR=0.790;VQSLOD=4.69;culprit=QD GT:AD:DP:GQ:PL 0/1:16,7:23:99:167,0,334 2 231438296 rs17276229 A G 216.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.047;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.42;ReadPosRankSum=1.017;SB=-1.730e+02;SOR=0.859;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 0/1:12,11:23:99:245,0,356 2 231438347 rs17276271 C T 139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=0.710;SB=-9.700e+01;SOR=0.446;VQSLOD=10.19;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:13:99:168,0,131 2 231738168 rs2289235 G A 658.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=5.967;HaplotypeScore=4.8305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=0.450;SB=-3.390e+02;SOR=0.205;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:35,28:63:99:687,0,1057 2 231738263 rs2289234 C T 1051.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.039;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=-1.034;SB=-6.550e+02;SOR=0.784;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 0/1:58,44:102:99:1080,0,1510 2 231738269 rs2289233 G A 959.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.757;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.50;ReadPosRankSum=-0.493;SB=-5.350e+02;SOR=0.854;VQSLOD=7.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:59,42:101:99:988,0,1520 2 231738318 rs3816150 T C 859.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=3.014;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=0.021;SB=-5.130e+02;SOR=0.387;VQSLOD=9.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:52,36:88:99:888,0,1372 2 231738466 rs6436977 A C 176.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=0.155;SB=-1.765e+00;SOR=1.863;VQSLOD=8.44;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:205,0,197 2 231742711 rs60237566 T G 1090.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.319;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=4.034;HaplotypeScore=1.5317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-0.676;SB=-7.650e+02;SOR=0.556;VQSLOD=6.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,46:86:99:1119,0,867 2 231742864 rs62195287 G A 279.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.317;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.017;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-0.114;SB=-5.600e+01;SOR=1.721;VQSLOD=5.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,10:20:99:308,0,282 2 231774844 rs2396777 G A 1119.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=5.088;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=-0.763;SB=-5.060e+02;SOR=1.158;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 0/1:55,43:98:99:1148,0,1437 2 231775144 rs1992187 G A 1789.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=0.657;HaplotypeScore=3.8210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=1.484;SB=-1.032e+03;SOR=0.755;VQSLOD=8.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,67:128:99:1818,0,1629 2 231775297 rs1992186 T G 2267.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.168;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=0.585;HaplotypeScore=2.7330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=-0.936;SB=-1.345e+03;SOR=0.638;VQSLOD=8.31;culprit=DP GT:AD:DP:GQ:PL 0/1:74,85:159:99:2296,0,1909 2 231860838 rs2271369 C T 616.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-2.391e+02;SOR=1.828;VQSLOD=5.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:51:645,51,0 2 231860848 rs6722863 A G 726.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.03;SB=-2.471e+02;SOR=1.931;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:755,60,0 2 231864289 rs2136474 A C 455.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.74;SB=-4.176e+01;SOR=3.767;VQSLOD=7.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:484,36,0 2 231864529 rs6436986 A G 2214.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-1.062e+03;SOR=1.195;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2243,166,0 2 231864600 rs7573039 T C 1472.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.47;SB=-6.170e+02;SOR=1.508;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1501,108,0 2 231865018 rs13406394 A G 993.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.13;SB=-3.230e+02;SOR=2.019;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:75:1022,75,0 2 231865047 rs3817173 T C 1163.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.33;SB=-3.670e+02;SOR=1.949;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:87:1192,87,0 2 231865090 rs2271376 T C 1908.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.09;SB=-7.090e+02;SOR=1.781;VQSLOD=4.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1937,141,0 2 231865269 rs2271375 G T 1895.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.13;SB=-6.040e+02;SOR=2.041;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1924,144,0 2 231867220 rs10933364 A G 443.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.14;SB=0.00;SOR=5.283;VQSLOD=8.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:472,39,0 2 231867578 rs2271372 G C 551.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.19;SB=0.00;SOR=5.421;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:580,42,0 2 231905855 rs2052625 C A 1033.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.909;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=0.663;SB=-1.320e+02;SOR=0.579;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:22,34:56:99:1062,0,655 2 231944373 rs2303353 A T 832.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.767;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=11.446;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=-0.445;SB=-3.470e+02;SOR=0.053;VQSLOD=5.07;culprit=FS GT:AD:DP:GQ:PL 0/1:18,32:50:99:861,0,499 2 231948178 rs906879 A G 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.625;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.880;SB=0.00;SOR=0.551;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:166,0,195 2 231949946 rs2303357 G A 598.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.811;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.470;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=0.875;SB=-1.270e+02;SOR=0.428;VQSLOD=10.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,22:51:99:627,0,898 2 232030510 rs2303351 C A 190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=-0.139;SB=0.00;SOR=0.836;VQSLOD=10.50;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:219,0,205 2 232030555 rs2303350 G A 524.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.713;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.10;ReadPosRankSum=-1.079;SB=-4.076e+01;SOR=0.557;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:10,19:29:99:553,0,324 2 232030861 rs2303349 A G 287.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.719;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=-0.984;SB=0.00;SOR=0.941;VQSLOD=9.96;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:316,0,215 2 232035429 rs6749 G A 1166.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.240;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=0.707;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=-0.378;SB=-6.950e+02;SOR=0.749;VQSLOD=7.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:65,48:113:99:1195,0,1838 2 232079409 rs79587894 C T 272.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.182;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=0.591;SB=-6.600e+01;SOR=0.693;VQSLOD=9.56;culprit=FS GT:AD:DP:GQ:PL 0/1:11,11:22:99:301,0,355 2 232087474 rs1626450 A G 955.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.96;SB=-3.290e+02;SOR=2.235;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:72:984,72,0 2 232087475 rs1626451 T A 1087.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-3.200e+02;SOR=2.432;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:84:1116,84,0 2 232135541 rs7604042 A T 552.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.023;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=0.366;SB=-2.930e+02;SOR=0.685;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:19,21:40:99:581,0,498 2 232153195 rs77340623 C T 238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.836;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=-0.176;SB=-6.200e+01;SOR=0.392;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:14,10:25:99:267,0,413 2 232196472 rs1729082 T A 810.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.839;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.5572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=1.095;SB=-3.200e+02;SOR=0.685;VQSLOD=9.10;culprit=FS GT:AD:DP:GQ:PL 0/1:30,33:63:99:839,0,737 2 232196564 rs1669083 C T 1129.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=1.703;HaplotypeScore=4.6507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-1.311;SB=-5.850e+02;SOR=1.005;VQSLOD=7.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,43:92:99:1158,0,1262 2 232196597 rs1669084 G A 922.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.347;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=1.014;SB=-5.250e+02;SOR=0.664;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:54,37:91:99:951,0,1372 2 232225535 . C CG 3670.73 PASS AC=2;AF=1.00;AN=2;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;RPA=3,4;RU=G;SB=-1.839e+03;SOR=0.714;STR;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:100:99:3708,280,0 2 232263127 rs2290130 G A 1760.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=1.254;HaplotypeScore=3.8090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=0.063;SB=-1.039e+03;SOR=0.583;VQSLOD=7.47;culprit=DP GT:AD:DP:GQ:PL 0/1:80,77:157:99:1789,0,2033 2 232317402 rs11295750 CA C 924.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.41;RPA=2,1;RU=A;ReadPosRankSum=-0.455;SB=-3.930e+02;SOR=0.677;STR;VQSLOD=9.11;culprit=FS GT:AD:DP:GQ:PL 0/1:34,26:60:99:962,0,1336 2 232320856 . G GA 1101.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;DP=97;ExcessHet=3.0103;FS=0.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;RPA=9,10;RU=A;ReadPosRankSum=0.232;SB=-3.500e+02;SOR=0.576;STR;VQSLOD=9.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,50:97:99:1139,0,752 2 232321956 rs7598759 C T 763.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=3.614;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=0.896;SB=-3.250e+02;SOR=1.293;VQSLOD=7.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,28:59:99:792,0,779 2 232325414 rs139777351 TTCA T 1015.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;DB;DP=32;ExcessHet=3.0103;FS=3.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.08;RPA=4,3;RU=TCA;ReadPosRankSum=1.061;SB=-4.650e+02;SOR=0.569;STR;VQSLOD=3.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,20:32:99:1053,0,436 2 232326417 rs1131171 C T 675.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.016;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=0.760;SB=-3.570e+02;SOR=0.490;VQSLOD=9.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,25:59:99:704,0,922 2 232326801 rs2595514 A T 1246.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-1.841e+02;SOR=2.948;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1275,99,0 2 232327880 rs59474219 C T 315.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.116;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.197;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=-1.389;SB=-9.403e+01;SOR=0.269;VQSLOD=9.65;culprit=SOR GT:AD:DP:GQ:PL 0/1:9,12:21:99:344,0,274 2 232378231 rs6750795 T C 1238.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.81;SB=-6.540e+02;SOR=1.312;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:90:1267,90,0 2 232389529 rs3752760 C G 97.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.52;ReadPosRankSum=0.295;SB=-3.100e+01;SOR=0.446;VQSLOD=9.32;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:99:126,0,259 2 232389530 rs3752761 A G 97.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.52;ReadPosRankSum=0.295;SB=-3.100e+01;SOR=0.446;VQSLOD=9.44;culprit=QD GT:AD:DP:GQ:PL 0/1:9,4:13:99:126,0,256 2 232389587 rs58655546 CCCT C 372.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.62;RPA=3,2;RU=CCT;ReadPosRankSum=0.083;SB=-1.580e+02;SOR=0.368;STR;VQSLOD=9.21;culprit=FS GT:AD:DP:GQ:PL 0/1:11,8:19:99:410,0,555 2 232389744 rs3752762 A G 500.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.056;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=1.219;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-0.908;SB=-2.390e+02;SOR=0.941;VQSLOD=7.24;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,19:40:99:529,0,634 2 232390151 rs3752763 A G 730.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.407;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=-0.145;SB=-1.600e+02;SOR=0.914;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:22,26:48:99:759,0,651 2 232458443 rs10933378 T C 1638.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=3.422;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=0.702;SB=-1.001e+03;SOR=0.404;VQSLOD=8.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,60:116:99:1667,0,1449 2 232577421 rs75345231 C T 826.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.825;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.992;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.97;ReadPosRankSum=1.261;SB=-1.070e+02;SOR=0.360;VQSLOD=9.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,27:46:99:855,0,575 2 232656741 rs117887698 T C 1603.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-0.780;SB=-8.990e+02;SOR=0.673;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 0/1:50,58:108:99:1632,0,1264 2 232790053 rs5268 C T 700.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.44;SB=-4.176e+01;SOR=3.716;VQSLOD=4.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:729,54,0 2 233028070 rs3116181 A G 231.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.993;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-0.769;SB=0.00;SOR=0.693;VQSLOD=10.33;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:260,0,255 2 233201328 rs3811578 A G 372.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.738;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.366;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-0.945;SB=-1.120e+02;SOR=1.734;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 0/1:17,15:32:99:401,0,401 2 233243660 rs2014448 T C 2722.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.61;SB=-1.347e+03;SOR=1.124;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2751,199,0 2 233244586 rs2853374 C G 1751.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.69;SB=-3.650e+02;SOR=2.790;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1780,135,0 2 233244930 rs1048988 G C 1131.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=18.1016;MLEAC=1;MLEAF=0.500;MQ=54.62;MQ0=2;MQRankSum=-5.724;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=-0.588;SB=-6.670e+02;SOR=0.706;VQSLOD=0.912;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,49:91:99:1160,0,1059 2 233251068 rs55781386 G C 752.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.051;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=7.049;HaplotypeScore=1.7356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=-1.617;SB=-1.840e+02;SOR=1.708;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 0/1:39,30:69:99:781,0,1128 2 233251534 rs73001992 C A 562.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.006;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.55;ReadPosRankSum=-0.245;SB=-1.410e+02;SOR=0.480;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:14,20:34:99:591,0,416 2 233271697 rs369374441 TAC T 746.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;DB;DP=53;ExcessHet=3.0103;FS=2.544;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=1.124;POSITIVE_TRAIN_SITE;QD=14.93;RPA=9,8;RU=AC;ReadPosRankSum=1.120;SB=-3.270e+02;SOR=0.375;STR;VQSLOD=0.268;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,23:53:99:784,0,999 2 233272162 rs2678517 G A 1355.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.694;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=0.651;HaplotypeScore=3.4987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-0.310;SB=-8.440e+02;SOR=0.602;VQSLOD=8.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:75,57:132:99:1384,0,1906 2 233272528 . G T 1337.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.729;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.62;ReadPosRankSum=-0.047;SB=-8.120e+02;SOR=0.569;VQSLOD=8.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,51:106:99:1366,0,1378 2 233274145 rs2090543 G C 1945.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8877;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=6;POSITIVE_TRAIN_SITE;QD=29.48;SB=-3.010e+02;SOR=2.910;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:1974,147,0 2 233274169 rs2091555 T C 1000.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.537;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=3.968;HaplotypeScore=6.3421;MLEAC=1;MLEAF=0.500;MQ=52.44;MQ0=5;MQRankSum=-1.771;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-0.131;SB=-7.800e+01;SOR=1.329;VQSLOD=0.016;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,34:86:99:1029,0,1117 2 233283015 rs62192181 A T 221.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.059;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-0.805;SB=-1.000e+02;SOR=1.402;VQSLOD=6.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,9:15:99:250,0,113 2 233283074 rs13003548 G A 112.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=5.441;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=1.122;SB=-6.300e+01;SOR=0.662;VQSLOD=4.84;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:141,0,141 2 233306647 rs790026 C G 399.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.43;SB=0.00;SOR=4.977;VQSLOD=7.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:428,33,0 2 233306836 rs790027 A G 1953.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.52;SB=-1.271e+03;SOR=0.840;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:1982,141,0 2 233306896 rs790028 A G 1529.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-5.100e+02;SOR=1.802;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1558,111,0 2 233307002 rs790029 T A 341.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=2;POSITIVE_TRAIN_SITE;QD=28.48;SB=0.00;SOR=4.804;VQSLOD=7.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:30:370,30,0 2 233310014 rs67171963 C T 232.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.0354;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=0.498;SB=-9.400e+01;SOR=0.293;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:19:99:261,0,226 2 233310058 rs790043 C T 336.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.867;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.86;ReadPosRankSum=0.257;SB=-1.880e+02;SOR=0.795;VQSLOD=9.45;culprit=QD GT:AD:DP:GQ:PL 0/1:24,14:38:99:365,0,655 2 233310149 rs790044 A G 300.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=4.945;HaplotypeScore=2.4524;MLEAC=1;MLEAF=0.500;MQ=58.12;MQ0=0;MQRankSum=-1.311;POSITIVE_TRAIN_SITE;QD=7.71;ReadPosRankSum=0.513;SB=-1.280e+02;SOR=1.229;VQSLOD=0.248;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,14:39:99:329,0,727 2 233310423 rs814220 C T 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.25;MQ0=2;MQRankSum=-4.682;POSITIVE_TRAIN_SITE;QD=4.44;ReadPosRankSum=-2.591;SB=-5.800e+01;SOR=0.751;VQSLOD=1.58;culprit=QD GT:AD:DP:GQ:PL 0/1:16,15:31:99:166,0,433 2 233311824 rs7568055 A T 177.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=1.242;SB=-3.200e+01;SOR=2.303;VQSLOD=5.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:4,6:10:65:206,0,65 2 233322875 rs2272421 C T 1581.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=1.521;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=1.201;SB=-9.400e+02;SOR=0.697;VQSLOD=7.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,61:112:99:1610,0,1238 2 233323177 rs2003780 T C 2139.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.171;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=3.738;HaplotypeScore=1.8737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-1.225;SB=-1.323e+03;SOR=0.647;VQSLOD=7.83;culprit=DP GT:AD:DP:GQ:PL 0/1:75,80:155:99:2168,0,1964 2 233344728 rs2741278 G C 140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=1.108;SB=0.00;SOR=0.446;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:169,0,235 2 233344991 rs2741279 T G 1009.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.636;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=2.944;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=0.898;SB=-6.250e+02;SOR=0.608;VQSLOD=6.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,40:81:99:1038,0,1068 2 233345249 rs1190432 C A,T 730.77 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.23;SB=-2.540e+02;SOR=1.893;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 1/2:0,15,10:25:99:759,301,262,458,0,434 2 233346381 rs11285283 GC G 488.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;DB;DP=33;ExcessHet=3.0103;FS=1.720;MLEAC=1;MLEAF=0.500;MQ=59.21;MQ0=0;MQRankSum=-1.195;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.45;RPA=5,4;RU=C;ReadPosRankSum=-0.488;SB=-1.300e+02;SOR=0.407;STR;VQSLOD=0.189;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,16:33:99:526,0,365 2 233346662 rs909432 A C 1726.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.54;SB=-3.190e+02;SOR=3.171;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1755,132,0 2 233347919 rs6750085 C G 1069.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.294;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=1.752;HaplotypeScore=1.5592;MLEAC=1;MLEAF=0.500;MQ=59.95;MQ0=0;MQRankSum=-0.977;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-0.046;SB=-7.560e+02;SOR=0.463;VQSLOD=0.063;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:44,44:88:99:1098,0,1140 2 233348005 rs2742077 G T 805.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.133;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.144;HaplotypeScore=4.3414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.473;SB=-2.740e+02;SOR=1.038;VQSLOD=7.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,26:66:99:834,0,1272 2 233349588 rs1529874 G A 2417.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.00;SB=-1.335e+03;SOR=0.855;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2446,190,0 2 233350000 rs2573246 C G 295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.837;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=1.048;SB=-1.430e+02;SOR=0.818;VQSLOD=9.50;culprit=FS GT:AD:DP:GQ:PL 0/1:11,12:23:99:324,0,283 2 233385396 rs1550094 G A 396.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=1.075;HaplotypeScore=4.8846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.20;ReadPosRankSum=-1.009;SB=-2.000e+02;SOR=1.179;VQSLOD=5.22;culprit=QD GT:AD:DP:GQ:PL 0/1:43,21:64:99:425,0,1162 2 233386229 rs2853444 T C 574.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=5.510;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.068;SB=-9.000e+01;SOR=1.814;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 0/1:21,19:40:99:603,0,614 2 233387635 rs733603 A G 153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.964;HaplotypeScore=3.6317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.09;ReadPosRankSum=0.923;SB=-4.900e+01;SOR=1.108;VQSLOD=5.52;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:182,0,410 2 233388488 . C T 250.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.091;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.91;ReadPosRankSum=-1.982;SB=-9.501e+01;SOR=0.399;VQSLOD=7.48;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,9:14:99:279,0,132 2 233388813 rs2741299 T G 353.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.536;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-0.023;SB=-1.780e+02;SOR=0.340;VQSLOD=9.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,12:28:99:382,0,480 2 233389045 . G A 997.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;DP=95;Dels=0.00;ExcessHet=3.0103;FS=3.978;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-1.293;SB=-4.610e+02;SOR=1.242;VQSLOD=5.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,40:95:99:1026,0,1401 2 233389167 rs58091792 G C 246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=2.000;HaplotypeScore=2.9045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.85;ReadPosRankSum=1.031;SB=-6.700e+01;SOR=0.290;VQSLOD=8.67;culprit=QD GT:AD:DP:GQ:PL 0/1:25,11:36:99:275,0,805 2 233389326 rs2853446 C T 109.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-0.303;SB=-6.700e+01;SOR=0.693;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:138,0,137 2 233389918 rs2853447 A G 470.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=-1.140;SB=-2.940e+02;SOR=0.784;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 0/1:30,21:51:99:499,0,795 2 233390937 rs2245601 A G 180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=-2.189;SB=-2.801e+01;SOR=2.303;VQSLOD=5.09;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,6:10:88:209,0,88 2 233391463 rs2278478 A G 146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.366;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=0.789;SB=-1.060e+02;SOR=0.527;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:175,0,241 2 233391965 rs4973537 A G 124.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=63.17;MQ0=0;MQRankSum=1.732;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.700;SB=0.00;SOR=0.693;VQSLOD=3.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,5:10:99:153,0,168 2 233392020 rs34885768 A AAAAG 504.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.86;MQ0=0;MQRankSum=2.416;QD=17.21;ReadPosRankSum=-1.352;SB=-1.880e+02;SOR=0.804;VQSLOD=2.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,10:23:99:542,0,635 2 233400074 rs2767 A G 412.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.543;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=8.457;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-1.537;SB=-1.150e+02;SOR=2.018;VQSLOD=5.94;culprit=FS GT:AD:DP:GQ:PL 0/1:13,16:29:99:441,0,346 2 233404294 rs11674608 C G 348.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.006;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.36;ReadPosRankSum=0.879;SB=-1.050e+02;SOR=1.314;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:6,13:19:99:377,0,178 2 233404334 rs72057846 C CGGGCTGGCT 1560.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;DB;DP=31;ExcessHet=3.0103;FS=6.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.01;RPA=2,3;RU=GGGCTGGCT;ReadPosRankSum=1.558;SB=-4.290e+02;SOR=1.871;STR;VQSLOD=4.34;culprit=FS GT:AD:DP:GQ:PL 0/1:11,15:31:99:1598,0,1046 2 233404590 rs12996322 G C 252.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.923;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=0.496;SB=-1.170e+02;SOR=0.693;VQSLOD=9.42;culprit=QD GT:AD:DP:GQ:PL 0/1:20,9:29:99:281,0,628 2 233406998 rs1881492 T G 298.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.621;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=0.075;SB=0.00;SOR=0.317;VQSLOD=10.22;culprit=FS GT:AD:DP:GQ:PL 0/1:17,10:27:99:327,0,588 2 233408190 rs60960955 A AC 396.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.951;DB;DP=38;ExcessHet=3.0103;FS=6.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.02;RPA=8,9;RU=C;ReadPosRankSum=0.618;SB=-1.290e+02;SOR=0.123;STR;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 0/1:19,17:38:99:434,0,539 2 233408220 rs10714586 AG A 1911.73 PASS AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;RPA=7,6;RU=G;SB=-5.840e+02;SOR=1.835;STR;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:55:99:1949,162,0 2 233408239 rs2573206 C G 846.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.072;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=12.462;HaplotypeScore=2.7259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-2.744;SB=-4.600e+02;SOR=0.101;VQSLOD=4.45;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:31,35:66:99:875,0,963 2 233408283 rs13018423 C T 1148.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.405;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=1.569;SB=-5.410e+02;SOR=0.767;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 0/1:53,45:98:99:1177,0,1272 2 233415978 rs11899983 T C 2195.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.191;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=-0.897;SB=-1.134e+03;SOR=0.679;VQSLOD=7.62;culprit=DP GT:AD:DP:GQ:PL 0/1:78,85:163:99:2224,0,1968 2 233421284 rs3830645 CT C 475.73 PASS AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.72;RPA=4,3;RU=T;SB=-7.197e+01;SOR=3.126;STR;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:16:45:513,45,0 2 233429144 rs72497300 GTATTT G 856.73 PASS AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.71;RPA=7,6;RU=TATTT;SB=-6.676e+01;SOR=3.912;STR;VQSLOD=5.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:41:42:894,42,0 2 233470843 rs7571133 G A 2106.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.263;DB;DP=180;Dels=0.00;ExcessHet=3.0103;FS=6.454;HaplotypeScore=2.7258;MLEAC=1;MLEAF=0.500;MQ=60.06;MQ0=0;MQRankSum=1.068;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=0.846;SB=-9.180e+02;SOR=1.178;VQSLOD=0.205;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:95,85:180:99:2135,0,2474 2 233470900 rs55750809 TC T 3142.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;DB;DP=189;ExcessHet=3.0103;FS=5.209;MLEAC=1;MLEAF=0.500;MQ=60.06;MQ0=0;MQRankSum=0.995;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.99;RPA=4,3;RU=C;ReadPosRankSum=-0.357;SB=-1.581e+03;SOR=0.418;STR;VQSLOD=0.054;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:91,94:189:99:3180,0,3072 2 233470931 rs10171498 C G 2112.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.791;DB;DP=173;Dels=0.00;ExcessHet=3.0103;FS=4.573;HaplotypeScore=4.4837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=-0.802;SB=-1.285e+03;SOR=0.439;VQSLOD=6.48;culprit=DP GT:AD:DP:GQ:PL 0/1:84,89:173:99:2141,0,2272 2 233502984 rs13029754 A G 959.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.811;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=-0.496;SB=-3.580e+02;SOR=0.673;VQSLOD=8.80;culprit=FS GT:AD:DP:GQ:PL 0/1:38,41:79:99:988,0,1110 2 233594875 rs13008942 G A 339.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.14;SB=-2.241e+02;SOR=0.836;VQSLOD=5.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:27:368,27,0 2 233599904 rs11555646 A C 1593.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.51;SB=-7.360e+02;SOR=1.567;VQSLOD=4.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1622,117,0 2 233633460 rs1801251 G A 3133.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.42;SB=-1.568e+03;SOR=1.125;VQSLOD=5.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:3162,238,0 2 233641083 rs737027 G C 2045.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.97;SB=-5.390e+02;SOR=2.376;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2074,153,0 2 233735162 rs114532944 C T 670.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.282;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-0.823;SB=-4.350e+02;SOR=0.459;VQSLOD=9.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,29:57:99:699,0,706 2 233757697 rs895432 A G 1369.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.747;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=2.363;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=1.604;SB=-6.970e+02;SOR=0.465;VQSLOD=8.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:73,53:126:99:1398,0,1864 2 233834806 rs113984112 A G 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=2.189;SB=0.00;SOR=1.085;VQSLOD=9.09;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,6:10:99:171,0,112 2 233834820 rs76603378 T C 72.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.09;ReadPosRankSum=2.655;SB=0.00;SOR=0.892;VQSLOD=7.41;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,5:10:99:101,0,136 2 233834975 rs4973588 A G 1624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-9.480e+02;SOR=0.970;VQSLOD=7.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1653,123,0 2 233835088 rs78336991 T C 1054.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.804;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=1.968;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=0.112;SB=-7.400e+02;SOR=0.434;VQSLOD=9.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,42:73:99:1083,0,745 2 233835150 rs75687703 A C 712.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.294;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-0.841;SB=-3.480e+02;SOR=0.616;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:17,31:48:99:741,0,474 2 233839710 rs75758173 A C 313.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.841;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=8.921;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=0.120;SB=-1.352e-01;SOR=3.145;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 0/1:18,10:28:99:342,0,468 2 233880271 rs60652209 A G 451.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-1.044;SB=-2.050e+02;SOR=0.693;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:16,19:35:99:480,0,403 2 233925166 rs1141328 G A 3670.77 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.37;SB=-8.420e+02;SOR=2.876;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,110:110:99:3699,274,0 2 233925406 rs34218488 T G 5421.77 PASS AC=2;AF=1.00;AN=2;DB;DP=162;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.47;SB=-2.306e+03;SOR=1.509;VQSLOD=6.20;culprit=DP GT:AD:DP:GQ:PL 1/1:0,162:162:99:5450,400,0 2 233925491 rs4246649 A G 2565.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.399;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.07;ReadPosRankSum=0.866;SB=-6.300e+02;SOR=2.257;VQSLOD=5.12;culprit=FS GT:AD:DP:GQ:PL 1/1:1,79:80:99:2594,159,0 2 233990412 rs55913569 C T 1586.77 PASS AC=2;AF=1.00;AN=2;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.76;SB=-3.200e+02;SOR=3.033;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,47:47:99:1615,126,0 2 233990594 rs61752227 A G 2167.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=2.124;HaplotypeScore=2.7059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=0.914;SB=-1.079e+03;SOR=0.891;VQSLOD=7.25;culprit=DP GT:AD:DP:GQ:PL 0/1:67,78:145:99:2196,0,1601 2 233997595 . A AT 374.86 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;DP=73;ExcessHet=3.0103;FS=4.857;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.94;RPA=21,22;RU=T;ReadPosRankSum=1.335;SB=-4.000e+01;SOR=2.093;STR;VQSLOD=4.79;culprit=QD GT:AD:DP:GQ:PL 0/1:26,28:73:99:410,0,245 2 234053986 rs142474245 C T 1548.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.831;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=1.707;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.30;ReadPosRankSum=0.870;SB=-6.360e+02;SOR=0.903;VQSLOD=7.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,53:95:99:1577,0,1133 2 234054873 rs1135173 G A 6694.77 PASS AC=2;AF=1.00;AN=2;DB;DP=231;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.98;SB=-4.403e+03;SOR=0.737;VQSLOD=4.79;culprit=DP GT:AD:DP:GQ:PL 1/1:0,231:231:99:6723,488,0 2 234066741 rs36142198 A C 363.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.080;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=3.468;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.19;ReadPosRankSum=-1.102;SB=-1.765e+00;SOR=2.093;VQSLOD=5.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,11:20:99:392,0,287 2 234066969 rs36127492 C G 872.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.699;SB=-4.950e+02;SOR=0.582;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:33,33:66:99:901,0,898 2 234067089 rs36165346 A G 546.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.550;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=0.851;SB=-1.850e+02;SOR=0.723;VQSLOD=9.74;culprit=FS GT:AD:DP:GQ:PL 0/1:13,21:34:99:575,0,318 2 234070190 rs28609111 G A 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=0.984;SB=0.00;SOR=1.609;VQSLOD=8.99;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:97:203,0,97 2 234070233 rs28576692 T C 392.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.528;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=0.801;SB=-9.900e+01;SOR=0.784;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:13,14:27:99:421,0,357 2 234072626 rs141642539 T C 921.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.79;SB=-2.061e+02;SOR=2.910;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:78:950,78,0 2 234072738 rs11673739 A G 159.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=0.536;SB=-1.050e+02;SOR=0.697;VQSLOD=10.29;culprit=FS GT:AD:DP:GQ:PL 0/1:3,7:10:64:188,0,64 2 234078056 rs11386687 AC A 1249.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.013;DB;DP=70;ExcessHet=3.0103;FS=1.990;MLEAC=1;MLEAF=0.500;MQ=60.15;MQ0=0;MQRankSum=1.104;POSITIVE_TRAIN_SITE;QD=18.11;ReadPosRankSum=0.698;SB=-6.170e+02;SOR=0.693;VQSLOD=0.517;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,32:70:99:1287,0,1548 2 234078582 rs10754947 G A 1081.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.310;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.862;HaplotypeScore=5.1926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-1.323;SB=-3.700e+02;SOR=0.559;VQSLOD=9.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,41:94:99:1110,0,1412 2 234091158 rs4571051 T C 2191.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;DB;DP=216;Dels=0.00;ExcessHet=3.0103;FS=1.087;HaplotypeScore=3.5862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=-0.626;SB=-1.230e+03;SOR=0.835;VQSLOD=6.37;culprit=DP GT:AD:DP:GQ:PL 0/1:120,95:216:99:2220,0,3099 2 234092825 rs6431381 C G 278.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.388;SB=0.00;SOR=0.610;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:11,10:21:99:307,0,384 2 234093035 rs6740918 G A 2766.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.289;DB;DP=238;Dels=0.00;ExcessHet=3.0103;FS=1.018;HaplotypeScore=4.3888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=0.450;SB=-1.486e+03;SOR=0.582;VQSLOD=6.83;culprit=DP GT:AD:DP:GQ:PL 0/1:128,110:238:99:2795,0,3458 2 234094360 rs66867406 TA T 66.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;DB;DP=20;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.45;RPA=23,22;RU=A;ReadPosRankSum=0.963;SB=-4.700e+01;SOR=1.061;STR;VQSLOD=4.82;culprit=QD GT:AD:DP:GQ:PL 0/1:7,8:20:74:104,0,74 2 234102250 rs11675867 A T 400.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.45;SB=0.00;SOR=4.977;VQSLOD=8.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:429,33,0 2 234102738 rs11681058 G T 785.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.22;SB=-3.150e+02;SOR=1.697;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:63:814,63,0 2 234107070 rs7569827 G A 1169.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;SB=-5.150e+02;SOR=1.666;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:90:1198,90,0 2 234112649 rs7609436 T C 2332.77 PASS AC=2;AF=1.00;AN=2;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.80;SB=-1.013e+03;SOR=1.497;VQSLOD=6.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,81:81:99:2361,172,0 2 234113057 rs7346 G A 1082.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=4.176;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=0.722;SB=-5.210e+02;SOR=1.280;VQSLOD=6.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,45:87:99:1111,0,1187 2 234113301 rs9247 C T 675.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.844;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.110;HaplotypeScore=1.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=0.941;SB=-3.450e+02;SOR=0.456;VQSLOD=9.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,30:66:99:704,0,1090 2 234113396 rs377336965 T TTG 343.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;DB;DP=27;ExcessHet=3.0103;FS=4.419;MLEAC=1;MLEAF=0.500;MQ=60.40;MQ0=0;MQRankSum=1.091;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.62;RPA=6,7;RU=TG;ReadPosRankSum=0.033;SB=-1.710e+02;SOR=0.116;STR;VQSLOD=0.416;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,11:27:99:381,0,416 2 234160345 rs2289477 T G 359.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.67;SB=-1.593e+02;SOR=1.609;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:388,30,0 2 234160669 rs10199278 C G 585.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-9.651e+01;SOR=2.833;VQSLOD=5.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:614,45,0 2 234173503 rs12994997 G A 415.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=-7.597e+01;SOR=2.833;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:444,33,0 2 234178453 rs12994971 C T 369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.62;SB=-4.176e+01;SOR=3.442;VQSLOD=7.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:398,30,0 2 234181593 rs2289475 G C 1591.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.03;SB=-9.080e+02;SOR=1.077;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1620,114,0 2 234183368 rs2241880 A G 2294.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6732;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;SB=-1.431e+03;SOR=0.776;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:74:99:2323,166,0 2 234183468 rs2241879 G A 2458.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.12;SB=-1.395e+03;SOR=0.770;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2487,187,0 2 234184417 rs3792109 G A 4769.77 PASS AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.38;SB=-2.814e+03;SOR=0.900;VQSLOD=7.21;culprit=DP GT:AD:DP:GQ:PL 1/1:0,157:157:99:4798,349,0 2 234185999 rs3816234 G A 481.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.17;SB=0.00;SOR=5.283;VQSLOD=7.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:510,39,0 2 234186489 rs2241877 A G 455.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.36;SB=0.00;SOR=5.136;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:484,36,0 2 234197717 rs4663136 C G 477.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.47;SB=0.00;SOR=5.283;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:506,39,0 2 234227523 rs2304777 A G 2526.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.44;SB=-1.406e+03;SOR=0.818;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:84:99:2555,190,0 2 234227693 rs2304776 C T 381.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.586;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.21;ReadPosRankSum=1.078;SB=-3.300e+01;SOR=1.609;VQSLOD=8.95;culprit=FS GT:AD:DP:GQ:PL 0/1:6,12:18:99:410,0,163 2 234235749 rs2304774 G C 1349.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.629;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=10.027;HaplotypeScore=4.4254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=1.369;SB=-8.300e+02;SOR=0.220;VQSLOD=5.19;culprit=FS GT:AD:DP:GQ:PL 0/1:47,54:101:99:1378,0,1333 2 234235820 rs2304773 C T 1777.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.579;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=4.049;HaplotypeScore=4.4716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=2.102;SB=-9.330e+02;SOR=1.047;VQSLOD=6.88;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:67,70:137:99:1806,0,1736 2 234238254 rs745498 T G 2612.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=-1.580e+03;SOR=0.770;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2641,190,0 2 234247508 rs13427703 C G 836.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.525;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.883;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=1.778;SB=-3.420e+02;SOR=0.895;VQSLOD=7.27;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:51,32:83:99:865,0,1429 2 234247627 rs2241874 T C 1008.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.70;SB=-4.276e+01;SOR=5.136;VQSLOD=5.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:75:1037,75,0 2 234249385 rs10803624 C T 154.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.913;SB=0.00;SOR=0.569;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:183,0,248 2 234255145 rs35371121 A C 933.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.374;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.902;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-0.729;SB=-4.250e+02;SOR=0.906;VQSLOD=7.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,35:73:99:962,0,1017 2 234255547 rs1046974 G A 1169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=8.044;HaplotypeScore=2.7765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-1.234;SB=-5.980e+02;SOR=0.978;VQSLOD=5.62;culprit=FS GT:AD:DP:GQ:PL 0/1:48,49:98:99:1198,0,1230 2 234294561 rs5839482 T TTC 4759.73 PASS AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.12;SB=-2.210e+03;SOR=0.887;VQSLOD=4.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:90:99:4797,265,0 2 234294791 rs838716 G C 812.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-7.697e+01;SOR=3.014;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:63:841,63,0 2 234345200 rs13406462 G A 340.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.830;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=-1.331;SB=-3.300e+01;SOR=0.569;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:16,14:30:99:369,0,539 2 234346004 rs55683548 G A 1937.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.640;HaplotypeScore=7.0468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=0.698;SB=-8.680e+02;SOR=0.808;VQSLOD=7.94;culprit=DP GT:AD:DP:GQ:PL 0/1:66,73:140:99:1966,0,1627 2 234347044 rs59458664 A G 465.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.707;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.974;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.32;ReadPosRankSum=-0.880;SB=-1.980e+02;SOR=0.283;VQSLOD=9.37;culprit=QD GT:AD:DP:GQ:PL 0/1:32,18:50:99:494,0,936 2 234347091 rs3214826 TA T 167.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.99;RPA=11,10;RU=A;ReadPosRankSum=-0.106;SB=-1.768e+00;SOR=1.609;STR;VQSLOD=8.00;culprit=QD GT:AD:DP:GQ:PL 0/1:11,10:26:99:205,0,256 2 234354245 rs2305542 G A 1636.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.502;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=1.964;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=-1.012;SB=-4.150e+02;SOR=0.441;VQSLOD=9.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,61:116:99:1665,0,1460 2 234354320 rs2305541 C T 2671.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.676;DB;DP=218;Dels=0.00;ExcessHet=3.0103;FS=1.068;HaplotypeScore=1.8318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=2.057;SB=-1.336e+03;SOR=0.600;VQSLOD=6.17;culprit=DP GT:AD:DP:GQ:PL 0/1:116,102:218:99:2700,0,2986 2 234356807 rs10208953 G A 2597.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.486;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=1.498;HaplotypeScore=2.7431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=-1.126;SB=-9.220e+02;SOR=0.542;VQSLOD=8.20;culprit=DP GT:AD:DP:GQ:PL 0/1:58,88:146:99:2626,0,1510 2 234359774 rs73117559 C A 460.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.473;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=-2.240;SB=0.00;SOR=1.179;VQSLOD=9.15;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:9,14:23:99:489,0,204 2 234367112 rs28588417 G A 653.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.985;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.821;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=0.482;SB=-6.100e+01;SOR=1.219;VQSLOD=7.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,23:44:99:682,0,597 2 234368639 rs201299808 AT A 157.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;DB;DP=27;ExcessHet=3.0103;FS=3.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.31;RPA=14,13;RU=T;ReadPosRankSum=1.116;SB=-9.200e+01;SOR=0.223;STR;VQSLOD=7.38;culprit=QD GT:AD:DP:GQ:PL 0/1:13,12:27:99:195,0,251 2 234368821 rs2290464 T C 1719.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-0.308;SB=-9.980e+02;SOR=0.649;VQSLOD=8.20;culprit=FS GT:AD:DP:GQ:PL 0/1:77,75:152:99:1748,0,2038 2 234369017 rs73117574 G C 735.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.340;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=-0.653;SB=-1.660e+02;SOR=0.508;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:38,27:65:99:764,0,1195 2 234372767 rs2924811 T C 1034.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.730;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.96;ReadPosRankSum=-0.335;SB=-3.510e+02;SOR=0.791;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:23,38:61:99:1063,0,607 2 234372985 rs2242098 A C 869.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.509;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.408;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=1.305;SB=-2.870e+02;SOR=0.409;VQSLOD=9.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,31:48:99:898,0,452 2 234386018 rs2971862 A G 239.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.637;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=5.959;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=2.219;SB=-2.657e-01;SOR=2.876;VQSLOD=4.97;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:14,8:22:99:268,0,403 2 234386134 rs2971863 A G 900.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=1.910;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=1.552;SB=-5.150e+02;SOR=0.440;VQSLOD=9.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,35:80:99:929,0,1128 2 234394329 rs1470864 C A 1191.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.833;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=8.649;HaplotypeScore=3.5082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=2.437;SB=-5.140e+02;SOR=1.333;VQSLOD=5.34;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:40,47:87:99:1220,0,1079 2 234394487 rs1048603 G A 1409.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-1.259;SB=-8.470e+02;SOR=0.700;VQSLOD=9.10;culprit=FS GT:AD:DP:GQ:PL 0/1:50,57:107:99:1438,0,1359 2 234394569 rs2603547 A G 612.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.701;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=6.777;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=-0.945;SB=-1.060e+02;SOR=2.049;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 0/1:31,23:54:99:641,0,732 2 234396542 rs2167885 G A 549.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=-0.357;SB=-3.520e+02;SOR=0.787;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:29,24:53:99:578,0,778 2 234398195 . G GA 239.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004;DP=39;ExcessHet=3.0103;FS=3.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.66;RPA=10,11;RU=A;ReadPosRankSum=0.096;SB=-6.000e+01;SOR=1.483;STR;VQSLOD=4.19;culprit=QD GT:AD:DP:GQ:PL 0/1:21,15:39:99:277,0,442 2 234405374 rs2602386 A C 531.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=6.835;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=0.250;SB=-1.590e+02;SOR=0.119;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 0/1:15,20:35:99:560,0,461 2 234405677 . G A 156.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.06;ReadPosRankSum=-0.619;SB=0.00;SOR=0.693;VQSLOD=8.33;culprit=FS GT:AD:DP:GQ:PL 0/1:6,6:12:99:185,0,206 2 234407160 rs2603546 C T 648.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.810;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.913;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-0.245;SB=-2.270e+02;SOR=0.296;VQSLOD=9.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,24:51:99:677,0,789 2 234408263 rs142848041 T A 207.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.862;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=1.739;SB=-1.200e+02;SOR=0.627;VQSLOD=8.76;culprit=FS GT:AD:DP:GQ:PL 0/1:13,10:23:99:236,0,329 2 234429739 rs59586144 T TTTC 1144.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;DB;DP=42;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.92;RPA=1,2;RU=TTC;ReadPosRankSum=0.536;SB=-5.120e+02;SOR=0.799;STR;VQSLOD=5.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,22:42:99:1182,0,875 2 234432017 rs838543 A G 1744.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.167;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=0.608;HaplotypeScore=2.6946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=0.050;SB=-7.880e+02;SOR=0.765;VQSLOD=8.49;culprit=DP GT:AD:DP:GQ:PL 0/1:93,64:157:99:1773,0,2306 2 234433124 rs838549 G A 556.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.469;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=8.011;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=-2.219;SB=-1.320e+02;SOR=1.901;VQSLOD=5.05;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:33,21:54:99:585,0,877 2 234438246 . C CT 952.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;DP=56;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=1.110;POSITIVE_TRAIN_SITE;QD=17.01;RPA=1,2;RU=T;ReadPosRankSum=-0.477;SB=-3.250e+02;SOR=0.402;STR;VQSLOD=0.490;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,26:56:99:990,0,1166 2 234438354 rs12692193 C T 194.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQ0=0;MQRankSum=0.615;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=0.763;SB=0.00;SOR=0.836;VQSLOD=3.73;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,7:13:99:223,0,207 2 234442437 rs11332355 CA C 315.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.52;RPA=11,10;RU=A;ReadPosRankSum=0.275;SB=0.00;SOR=1.143;STR;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:12,18:33:99:353,0,257 2 234449316 rs2167884 G A 1218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.159;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=2.787;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.826;SB=-6.800e+02;SOR=0.679;VQSLOD=6.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,47:89:99:1247,0,1176 2 234449462 rs1545525 T C 389.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.146;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=0.988;SB=-3.501e+01;SOR=0.507;VQSLOD=10.09;culprit=FS GT:AD:DP:GQ:PL 0/1:16,13:29:99:418,0,515 2 234457900 rs3965793 T A 365.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.570;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.342;SB=-4.176e+01;SOR=0.121;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:12,15:28:99:394,0,406 2 234494135 rs28946875 G T 164.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-0.199;SB=-1.410e+02;SOR=0.368;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:3,8:11:64:193,0,64 2 234545998 rs201411879 G A 2388.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.543;DB;DP=188;Dels=0.00;ExcessHet=3.0103;FS=1.143;HaplotypeScore=2.6551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.71;ReadPosRankSum=0.408;SB=-1.242e+03;SOR=0.816;VQSLOD=6.11;culprit=DP GT:AD:DP:GQ:PL 0/1:92,96:188:99:2417,0,2511 2 234580453 rs3832043 AT A 719.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.07;RPA=10,9;RU=T;ReadPosRankSum=0.467;SB=-1.730e+02;SOR=0.730;STR;VQSLOD=9.16;culprit=FS GT:AD:DP:GQ:PL 0/1:30,35:65:99:757,0,685 2 234590970 rs17868323 T G 875.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.250;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=-1.029;POSITIVE_TRAIN_SITE;QD=19.46;ReadPosRankSum=0.522;SB=-2.770e+02;SOR=0.914;VQSLOD=3.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,29:45:99:904,0,406 2 234590974 rs17863778 C A 872.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.996;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=-1.012;POSITIVE_TRAIN_SITE;QD=20.30;ReadPosRankSum=0.727;SB=-2.460e+02;SOR=1.179;VQSLOD=3.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,28:43:99:901,0,333 2 234590975 rs17868324 G A 872.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=1.406;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=59.57;MQ0=0;MQRankSum=-1.012;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.30;ReadPosRankSum=0.739;SB=-2.440e+02;SOR=1.179;VQSLOD=0.086;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,28:43:99:901,0,383 2 234598991 rs7563561 T G 927.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.450;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=1.823;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.799;SB=-5.000e+02;SOR=0.956;VQSLOD=7.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,36:82:99:956,0,1232 2 234599089 rs7608175 C G 1173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.218;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=2.115;SB=-6.200e+02;SOR=0.627;VQSLOD=9.12;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:59,40:99:99:1202,0,1616 2 234599296 rs45615240 T C 656.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.266;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.281;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=-0.981;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-0.107;SB=-2.440e+02;SOR=0.414;VQSLOD=0.114;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,27:53:99:685,0,697 2 234601669 rs6759892 T G 970.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.117;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=-0.622;SB=-4.410e+02;SOR=0.743;VQSLOD=8.64;culprit=FS GT:AD:DP:GQ:PL 0/1:48,41:89:99:999,0,1332 2 234601965 rs1105880 A G 1002.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.817;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.084;HaplotypeScore=2.6550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=0.077;SB=-5.270e+02;SOR=0.414;VQSLOD=10.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,32:66:99:1031,0,936 2 234602202 rs1105879 A C 1207.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.980;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.698;HaplotypeScore=2.8660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=0.032;SB=-7.690e+02;SOR=0.776;VQSLOD=8.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,48:114:99:1236,0,1704 2 234602277 rs17863783 G T 1192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.720;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=3.446;HaplotypeScore=2.4875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=-0.774;SB=-5.060e+02;SOR=0.853;VQSLOD=6.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:67,47:114:99:1221,0,1736 2 234626287 rs869283 G A 1617.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.812;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=2.838;HaplotypeScore=2.6566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=0.682;SB=-8.490e+02;SOR=0.443;VQSLOD=9.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,65:102:99:1646,0,848 2 234627937 rs2011404 T C 7223.77 PASS AC=2;AF=1.00;AN=2;DB;DP=240;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.5414;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.10;SB=-4.043e+03;SOR=0.816;VQSLOD=1.45;culprit=DP GT:AD:DP:GQ:PL 1/1:0,240:240:99:7252,536,0 2 234637707 rs3806596 T C 355.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.155;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.524;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=-0.219;SB=-8.000e+01;SOR=1.270;VQSLOD=7.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,14:35:99:384,0,506 2 234637803 . T C 572.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5310;MLEAC=1;MLEAF=0.500;MQ=59.30;MQ0=0;MQRankSum=-2.041;QD=11.46;ReadPosRankSum=-0.621;SB=-3.670e+02;SOR=0.555;VQSLOD=2.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,25:50:99:601,0,641 2 234637853 rs6706232 G A 633.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.678;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=1.037;HaplotypeScore=4.0339;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=-2.260;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=0.008;SB=-3.810e+02;SOR=0.670;VQSLOD=0.013;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,26:58:99:662,0,923 2 234637912 rs6431625 T C 599.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.761;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=0;MQRankSum=-2.390;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=-0.380;SB=-3.570e+02;SOR=0.795;VQSLOD=2.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,24:57:99:628,0,844 2 234638249 rs7574296 A G 2943.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.293;DB;DP=234;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=-2.163;SB=-1.662e+03;SOR=0.727;VQSLOD=5.01;culprit=DP GT:AD:DP:GQ:PL 0/1:117,117:234:99:2972,0,3287 2 234638690 rs2361501 A T 1347.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=2.664;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.587;SB=-5.670e+02;SOR=1.002;VQSLOD=7.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,52:103:99:1376,0,1260 2 234656640 rs11888459 T C 1866.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.713;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.4362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=1.164;SB=-1.209e+03;SOR=0.807;VQSLOD=7.97;culprit=FS GT:AD:DP:GQ:PL 0/1:54,72:126:99:1895,0,1429 2 234663649 rs10929301 C G 1072.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.528;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.905;HaplotypeScore=4.4958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=-0.357;SB=-4.990e+02;SOR=0.480;VQSLOD=9.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,41:75:99:1101,0,917 2 234663722 rs28900391 T C 879.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.519;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.119;HaplotypeScore=2.6984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=-0.964;SB=-4.660e+02;SOR=0.458;VQSLOD=9.46;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,32:53:99:908,0,557 2 234668879 rs3064744 C CAT 397.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;DB;DP=22;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.08;RPA=7,8;RU=AT;ReadPosRankSum=1.347;SB=-1.270e+02;SOR=0.155;STR;VQSLOD=8.55;culprit=SOR GT:AD:DP:GQ:PL 0/1:11,11:22:99:435,0,383 2 234676409 rs34082659 C T 609.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.692;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=3.780;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=0.347;SB=-2.450e+02;SOR=1.230;VQSLOD=7.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,25:55:99:638,0,944 2 234688036 rs6431631 C A 528.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.38;SB=-2.750e+02;SOR=1.179;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:42:557,42,0 2 234698097 rs12468017 T C 597.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.523;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.107;HaplotypeScore=2.4964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=-0.534;SB=-3.520e+02;SOR=0.451;VQSLOD=10.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,24:50:99:626,0,797 2 234702212 rs6738710 G C 1173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.593;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=2.913;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=0.489;SB=-1.250e+02;SOR=1.247;VQSLOD=7.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,39:76:99:1202,0,980 2 234702459 rs1500481 T C 2835.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.466;DB;DP=169;Dels=0.00;ExcessHet=3.0103;FS=4.105;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=0.113;SB=-8.090e+02;SOR=1.061;VQSLOD=6.84;culprit=DP GT:AD:DP:GQ:PL 0/1:73,96:169:99:2864,0,1900 2 234702905 rs10169532 C T 81.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.45;ReadPosRankSum=0.654;SB=-3.100e+01;SOR=0.307;VQSLOD=9.74;culprit=QD GT:AD:DP:GQ:PL 0/1:11,4:15:99:110,0,361 2 234703136 rs6431634 T C 515.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.638;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=3.905;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=-1.159;SB=-2.910e+02;SOR=1.138;VQSLOD=7.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,23:50:99:544,0,707 2 234704150 rs2885297 T C 876.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.810;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.894;HaplotypeScore=4.4122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=0.145;SB=-3.620e+02;SOR=0.538;VQSLOD=9.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,35:86:99:905,0,1340 2 234704318 rs2361503 A G 970.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.141;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=1.704;HaplotypeScore=3.9324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.16;ReadPosRankSum=-0.490;SB=-3.780e+02;SOR=0.986;VQSLOD=7.40;culprit=QD GT:AD:DP:GQ:PL 0/1:70,36:106:99:999,0,1984 2 234704495 rs11563248 T G 871.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.257;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=13.976;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=-0.898;SB=-2.570e+02;SOR=1.881;VQSLOD=5.47;culprit=FS GT:AD:DP:GQ:PL 0/1:51,32:83:99:900,0,1504 2 234704690 rs759173 T C 976.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.409;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=-0.238;SB=-5.030e+02;SOR=0.758;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 0/1:46,40:86:99:1005,0,1367 2 234704746 rs759172 G C 2498.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.41;SB=-1.062e+03;SOR=1.230;VQSLOD=4.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2527,184,0 2 234704910 rs200628720 C T 614.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.949;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.08;ReadPosRankSum=0.405;SB=-2.310e+02;SOR=0.869;VQSLOD=8.38;culprit=FS GT:AD:DP:GQ:PL 0/1:25,22:47:99:643,0,668 2 234707341 rs1500479 T C 1457.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-3.380e+02;SOR=2.461;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1486,108,0 2 234707460 rs11563247 G C 819.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.838;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=-1.063;SB=-5.490e+02;SOR=0.527;VQSLOD=9.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,37:83:99:848,0,1170 2 234708428 rs13013882 G A 2042.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.05;SB=-5.040e+02;SOR=2.546;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:2071,166,0 2 234708570 rs11563069 G A 4081.77 PASS AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.16;SB=-2.481e+03;SOR=0.844;VQSLOD=5.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,140:140:99:4110,304,0 2 234708629 rs13018934 G A 1593.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=8.488;HaplotypeScore=2.9988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-0.825;SB=-6.690e+02;SOR=1.436;VQSLOD=5.03;culprit=FS GT:AD:DP:GQ:PL 0/1:60,62:122:99:1622,0,1537 2 234708720 rs2041652 T G 934.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.668;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.817;HaplotypeScore=4.4971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-0.045;SB=-5.340e+02;SOR=0.538;VQSLOD=9.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:57,34:91:99:963,0,1616 2 234712921 rs10175949 G A 2276.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.08;SB=-7.340e+02;SOR=1.688;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:61:99:2305,178,0 2 234713812 rs2041651 G T 4528.77 PASS AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.12;SB=-1.724e+03;SOR=1.593;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,141:141:99:4557,340,0 2 234717669 rs10803663 A G 553.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.315;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=3.974;HaplotypeScore=3.9392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=-0.667;SB=-1.770e+02;SOR=1.302;VQSLOD=7.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,23:57:99:582,0,1037 2 234720734 rs988344 A C 681.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-3.290e+02;SOR=1.329;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:54:710,54,0 2 234725502 rs726016 T C 4024.77 PASS AC=2;AF=1.00;AN=2;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.75;SB=-2.318e+03;SOR=1.092;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,140:140:99:4053,301,0 2 234727250 rs719419 T G 1855.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.46;SB=-7.440e+02;SOR=1.802;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1884,144,0 2 234727478 rs6759919 A G 613.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.470;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=0.091;SB=-1.180e+02;SOR=0.901;VQSLOD=9.33;culprit=FS GT:AD:DP:GQ:PL 0/1:27,22:49:99:642,0,749 2 234727986 rs6754859 C T 3197.84 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.61;SB=-1.703e+03;SOR=1.127;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,108:108:99:3226,244,0 2 234728078 rs1500480 T C 3303.77 PASS AC=2;AF=1.00;AN=2;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-1.435e+03;SOR=1.609;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,106:106:99:3332,244,0 2 234732317 rs11676792 A G 123.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.528;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.066;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.16;ReadPosRankSum=-0.300;SB=-1.807e+01;SOR=1.609;VQSLOD=4.82;culprit=QD GT:AD:DP:GQ:PL 0/1:18,6:24:99:152,0,474 2 234738175 rs502059 A G 562.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.828;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=2.927;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.15;ReadPosRankSum=-1.035;SB=-7.797e+01;SOR=0.193;VQSLOD=9.74;culprit=SOR GT:AD:DP:GQ:PL 0/1:12,19:31:99:591,0,377 2 234738472 rs582432 G A 749.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.360;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.740;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-1.100;SB=-2.310e+02;SOR=0.365;VQSLOD=9.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,29:59:99:778,0,895 2 234740758 rs213547 A G 506.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.249;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.304;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-1.406;SB=-9.200e+01;SOR=1.514;VQSLOD=6.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,18:41:99:535,0,599 2 234740797 rs67307514 C CAAAA 1394.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.803;DB;DP=56;ExcessHet=3.0103;FS=3.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=1.590;SB=-3.400e+02;SOR=1.287;VQSLOD=5.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,22:56:99:1432,0,2455 2 234740798 . T A 643.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;DP=55;Dels=0.00;ExcessHet=3.0103;FS=3.983;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.70;ReadPosRankSum=1.779;SB=-1.870e+02;SOR=1.287;VQSLOD=5.42;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:33,22:55:99:672,0,843 2 234740985 rs474242 G A 793.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.239;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=2.268;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=-2.402;SB=-3.530e+02;SOR=1.106;VQSLOD=6.80;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:27,31:58:99:822,0,660 2 234740987 rs658482 C G 794.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.501;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=2.184;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=-2.195;SB=-3.870e+02;SOR=1.034;VQSLOD=6.89;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:28,31:59:99:823,0,706 2 234741022 . T C 481.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.531;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=16.9959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.75;ReadPosRankSum=-0.026;SB=-2.230e+02;SOR=0.853;VQSLOD=8.36;culprit=FS GT:AD:DP:GQ:PL 0/1:22,19:41:99:510,0,656 2 234741028 rs33951293 A AG 729.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.686;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=-0.337;SB=-3.040e+02;SOR=0.622;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:20,19:41:99:767,0,807 2 234741443 rs213548 G A 141.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.976;SB=-1.765e+00;SOR=1.609;VQSLOD=8.82;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:170,0,173 2 234749151 rs213555 C T 287.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.745;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=2.722;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=1.184;SB=-5.150e-01;SOR=1.911;VQSLOD=5.73;culprit=QD GT:AD:DP:GQ:PL 0/1:22,11:33:99:316,0,691 2 234750542 rs3732215 G C 1515.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.883;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=4.571;HaplotypeScore=7.1204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-2.386;SB=-7.170e+02;SOR=1.152;VQSLOD=6.16;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:58,57:115:99:1544,0,1588 2 234750831 rs3806589 T C 1637.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.753;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=1.284;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=-0.646;SB=-9.430e+02;SOR=0.568;VQSLOD=7.69;culprit=DP GT:AD:DP:GQ:PL 0/1:90,67:157:99:1666,0,2429 2 234752638 rs7583713 C T 58.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=2.730;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.88;ReadPosRankSum=-0.755;SB=-2.901e+01;SOR=0.169;VQSLOD=9.04;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:87:87,0,220 2 234753008 rs169925 G A 513.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=-0.054;SB=-1.590e+02;SOR=0.859;VQSLOD=10.21;culprit=FS GT:AD:DP:GQ:PL 0/1:22,18:40:99:542,0,596 2 234754273 rs2302156 T C 183.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=2.823;SB=0.00;SOR=1.085;VQSLOD=9.22;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,6:10:99:212,0,126 2 234758500 rs529963 G A 248.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.358;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.77;ReadPosRankSum=-0.234;SB=-1.230e+02;SOR=1.179;VQSLOD=8.96;culprit=QD GT:AD:DP:GQ:PL 0/1:20,12:33:99:277,0,628 2 234758614 rs693637 A G 542.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=2.387;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=-0.038;SB=-3.390e+02;SOR=1.005;VQSLOD=7.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,24:51:99:571,0,725 2 234761355 rs554699 G A 1435.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=0.783;SB=-6.980e+02;SOR=0.679;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:42,57:99:99:1464,0,1087 2 234762272 rs473504 C A 170.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.696;SB=0.00;SOR=0.569;VQSLOD=9.73;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:199,0,229 2 234762480 rs626110 A T 1305.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.666;DB;DP=116;Dels=0.00;ExcessHet=3.0103;FS=1.493;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=-0.838;SB=-7.640e+02;SOR=0.665;VQSLOD=8.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,52:116:99:1334,0,1681 2 234763225 rs622954 T C 622.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.794;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=2.754;HaplotypeScore=5.3678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.960;SB=-1.500e+02;SOR=1.179;VQSLOD=7.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,22:48:99:651,0,616 2 234763226 rs503913 C T 626.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.947;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.240;HaplotypeScore=4.4519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.884;SB=-2.000e+02;SOR=1.048;VQSLOD=7.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,23:47:99:655,0,633 2 234775346 rs13384181 G A 1352.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.702;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=-1.528;SB=-6.200e+02;SOR=0.712;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:59,52:111:99:1381,0,1611 2 234846198 rs1019103 G A 573.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.88;SB=-1.045e+02;SOR=2.833;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:45:602,45,0 2 234875433 rs12185625 A G 2387.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.61;SB=-1.236e+03;SOR=0.976;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2416,184,0 2 234878261 rs6760498 G A 577.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-7.697e+01;SOR=3.383;VQSLOD=7.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:45:606,45,0 2 234888643 rs6745987 T C 528.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.99;SB=-4.276e+01;SOR=4.047;VQSLOD=7.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:557,42,0 2 234888721 rs6736916 C T 1229.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-5.490e+02;SOR=1.445;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:93:1258,93,0 2 234890391 rs6708995 G T 353.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=23.66;SB=-3.976e+01;SOR=3.258;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:382,30,0 2 234890793 rs4663993 C T 608.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.12;SB=0.00;SOR=5.784;VQSLOD=7.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:637,48,0 2 234892038 rs147704653 A G 653.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-0.170;SB=-1.460e+02;SOR=0.646;VQSLOD=9.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,23:48:99:682,0,679 2 234892127 rs4663995 T C 373.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.98;SB=0.00;SOR=4.977;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:402,33,0 2 234915540 rs11563071 C G 375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.83;ReadPosRankSum=0.784;SB=-2.190e+02;SOR=0.709;VQSLOD=8.28;culprit=QD GT:AD:DP:GQ:PL 0/1:38,17:55:99:404,0,1060 2 234916771 . AT A 71.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.17;RPA=15,14;RU=T;ReadPosRankSum=-0.725;SB=-2.103e+01;SOR=0.818;STR;VQSLOD=8.27;culprit=QD GT:AD:DP:GQ:PL 0/1:23,10:39:99:109,0,428 2 234916831 rs6734618 A G 637.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.73;SB=-1.473e+02;SOR=1.708;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:48:666,48,0 2 234923124 rs3732214 A C 888.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-0.605;SB=-4.370e+02;SOR=0.799;VQSLOD=8.83;culprit=FS GT:AD:DP:GQ:PL 0/1:44,34:78:99:917,0,1110 2 234923170 rs11562948 A G 792.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.912;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=5.686;HaplotypeScore=1.9461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-0.728;SB=-4.290e+02;SOR=0.255;VQSLOD=9.06;culprit=FS GT:AD:DP:GQ:PL 0/1:27,33:61:99:821,0,793 2 234967539 rs593668 T A 3629.77 PASS AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.02;SB=-2.160e+03;SOR=0.781;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,117:117:99:3658,268,0 2 234978363 rs250977 G A 146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.589;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.63;ReadPosRankSum=-0.554;SB=0.00;SOR=0.293;VQSLOD=10.06;culprit=QD GT:AD:DP:GQ:PL 0/1:11,6:17:99:175,0,337 2 235950187 rs1469375 T C 2597.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;DB;DP=243;Dels=0.00;ExcessHet=3.0103;FS=6.135;HaplotypeScore=6.7130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=-0.354;SB=-1.476e+03;SOR=0.713;VQSLOD=4.55;culprit=DP GT:AD:DP:GQ:PL 0/1:144,99:243:99:2626,0,3932 2 235951819 rs3795962 A G 1238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.611;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-0.447;SB=-7.880e+02;SOR=0.631;VQSLOD=9.14;culprit=FS GT:AD:DP:GQ:PL 0/1:55,47:102:99:1267,0,1448 2 235961010 rs6739888 C T 157.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=6.264;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=-0.980;SB=-1.300e+02;SOR=0.061;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 0/1:3,8:11:99:186,0,99 2 235961135 rs62186390 G A 479.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.788;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.419;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=1.221;SB=-2.540e+02;SOR=0.257;VQSLOD=9.69;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,19:33:99:508,0,451 2 235961524 rs28403579 C T 60.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.52;ReadPosRankSum=-1.602;SB=-1.765e+00;SOR=0.693;VQSLOD=8.85;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:89:89,0,231 2 235961953 rs28403580 G A 749.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.217;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=2.303;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-0.024;SB=-3.640e+02;SOR=0.377;VQSLOD=9.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,30:57:99:778,0,846 2 236433161 rs62191529 G A 1221.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.177;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=-1.573;SB=-8.010e+02;SOR=0.633;VQSLOD=8.60;culprit=FS GT:AD:DP:GQ:PL 0/1:58,54:112:99:1250,0,1507 2 236433331 rs11689907 T C 1158.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;SB=-3.550e+02;SOR=2.303;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:93:1187,93,0 2 236433390 rs10207027 G A 609.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;SB=-1.205e+02;SOR=2.948;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:48:638,48,0 2 236617582 rs3754671 T C 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=-0.069;SB=0.00;SOR=0.569;VQSLOD=9.08;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:207,0,239 2 236617595 rs3754670 T C 171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=1.008;SB=0.00;SOR=0.473;VQSLOD=10.18;culprit=FS GT:AD:DP:GQ:PL 0/1:8,6:14:99:200,0,264 2 236626048 . A G 368.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.940;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.44;ReadPosRankSum=1.180;SB=0.00;SOR=0.892;VQSLOD=8.32;culprit=FS GT:AD:DP:GQ:PL 0/1:9,11:20:99:397,0,296 2 236761396 rs13006916 C T 1478.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.58;SB=-7.920e+02;SOR=1.157;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1507,108,0 2 236817336 rs8178997 CT C 418.14 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.392;DB;DP=29;ExcessHet=3.0103;FS=2.679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.08;RPA=14,13;RU=T;ReadPosRankSum=0.763;SB=-1.450e+02;SOR=0.249;STR;VQSLOD=8.52;culprit=SOR GT:AD:DP:GQ:PL 1/1:3,23:29:10:455,10,0 2 236923361 . C CT 918.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.313;DP=36;ExcessHet=3.0103;FS=6.284;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=27.02;RPA=9,10;RU=T;ReadPosRankSum=-0.153;SB=-1.888e+02;SOR=2.455;STR;VQSLOD=5.58;culprit=FS GT:AD:DP:GQ:PL 1/1:1,33:36:75:956,75,0 2 236957822 rs2034648 G A 2354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-11.376;DB;DP=229;Dels=0.00;ExcessHet=3.0103;FS=1.048;HaplotypeScore=3.3245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=0.188;SB=-1.335e+03;SOR=0.584;VQSLOD=6.73;culprit=DP GT:AD:DP:GQ:PL 0/1:133,95:228:99:2383,0,3641 2 237029104 rs2278884 C T 746.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.106;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=3.586;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=-0.524;SB=-4.310e+02;SOR=0.705;VQSLOD=5.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,31:59:99:775,0,713 2 237032523 rs11893568 A G 320.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.103;HaplotypeScore=2.6984;MLEAC=1;MLEAF=0.500;MQ=58.69;MQ0=0;MQRankSum=1.228;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=0.403;SB=-1.100e+02;SOR=0.264;VQSLOD=0.052;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,13:23:99:349,0,281 2 237032703 rs8178994 T C 732.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.159;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=6.482;HaplotypeScore=1.8136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=0.914;SB=-4.430e+02;SOR=0.352;VQSLOD=6.55;culprit=FS GT:AD:DP:GQ:PL 0/1:44,29:73:99:761,0,1069 2 237032837 rs11899677 G A 424.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.016;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.70;ReadPosRankSum=1.401;SB=-1.711e+02;SOR=0.324;VQSLOD=9.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,17:24:99:453,0,209 2 237076096 rs112186240 C G 371.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=21.4781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=0.901;SB=-1.250e+02;SOR=0.770;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:18,13:31:99:400,0,468 2 237105050 rs55818776 C T 106.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=0.352;SB=0.00;SOR=0.859;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:135,0,111 2 237146643 rs72060634 TGTG T 207.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.88;RPA=4,3;RU=GTG;ReadPosRankSum=-0.880;SB=-1.000e+02;SOR=0.495;STR;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:13:99:245,0,293 2 237149941 rs6756597 C T 627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.182;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=11.416;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=0.627;SB=-1.490e+02;SOR=2.303;VQSLOD=5.92;culprit=FS GT:AD:DP:GQ:PL 0/1:24,22:46:99:656,0,647 2 237150166 rs2015983 A C 1193.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=-5.240e+02;SOR=1.609;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:93:1222,93,0 2 237349811 rs143096040 CT C 755.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.382;DB;DP=38;ExcessHet=3.0103;FS=1.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.43;ReadPosRankSum=-1.459;SB=-1.590e+02;SOR=1.058;VQSLOD=5.35;culprit=QD GT:AD:DP:GQ:PL 0/1:18,19:38:99:793,0,760 2 237396935 rs6751722 G A 424.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.891;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=3.617;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=1.149;SB=-1.765e+00;SOR=2.179;VQSLOD=6.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,13:23:99:453,0,290 2 237405693 rs78205953 A G 264.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.081;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=6.397;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.093;SB=-5.150e-01;SOR=2.833;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 0/1:13,10:23:99:293,0,411 2 237489904 rs1045879 C T 788.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.618;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=5.124;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.600;SB=-3.570e+02;SOR=0.887;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 0/1:34,29:63:99:817,0,1036 2 238166147 rs4377288 G A 581.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.411;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=1.147;HaplotypeScore=1.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=0.645;SB=-3.750e+02;SOR=0.693;VQSLOD=6.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,23:42:99:610,0,503 2 238233410 rs4663722 C G 1120.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.839;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=2.456;HaplotypeScore=16.5659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=1.136;SB=-6.420e+02;SOR=0.941;VQSLOD=6.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:65,48:113:99:1149,0,1587 2 238233483 rs13032404 G A 1142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.9691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=1.504;SB=-2.880e+02;SOR=0.786;VQSLOD=8.20;culprit=FS GT:AD:DP:GQ:PL 0/1:35,42:79:99:1171,0,941 2 238243292 rs1131296 G A 1587.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.76;SB=-5.450e+02;SOR=1.958;VQSLOD=8.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1616,120,0 2 238243464 rs2270669 C G 2239.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.11;SB=-1.222e+03;SOR=1.002;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2268,163,0 2 238244575 rs4233631 T C 1106.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-2.800e+02;SOR=2.584;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:84:1135,84,0 2 238244963 COL6A3 A G 4227.77 PASS AC=2;AF=1.00;AN=2;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.9183;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.29;SB=-1.535e+03;SOR=1.845;VQSLOD=7.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,127:127:99:4256,337,0 2 238249630 COL6A3 C T 5805.77 PASS AC=2;AF=1.00;AN=2;DB;DP=186;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6154;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.21;SB=-3.533e+03;SOR=0.715;VQSLOD=6.08;culprit=DP GT:AD:DP:GQ:PL 1/1:0,186:186:99:5834,433,0 2 238258814 COL6A3 C G 3543.77 PASS AC=2;AF=1.00;AN=2;DB;DP=114;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.09;SB=-1.514e+03;SOR=1.651;VQSLOD=4.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,114:114:99:3572,256,0 2 238259675 rs3790995 G A 1555.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.35;SB=-7.440e+02;SOR=1.287;VQSLOD=6.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1584,123,0 2 238260829 rs3828135 G T 117.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.297;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=-0.263;SB=0.00;SOR=0.551;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:146,0,201 2 238261112 rs4663726 G A 1646.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.108;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=7.066;HaplotypeScore=1.8663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=1.201;SB=-8.130e+02;SOR=1.007;VQSLOD=5.05;culprit=FS GT:AD:DP:GQ:PL 0/1:57,61:118:99:1675,0,1625 2 238261113 rs4663727 C A 1615.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.115;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=5.698;HaplotypeScore=1.8663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=1.192;SB=-8.520e+02;SOR=0.872;VQSLOD=4.59;culprit=FS GT:AD:DP:GQ:PL 0/1:57,60:117:99:1644,0,1640 2 238266248 rs7577192 G C 820.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.467;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=0.165;SB=-2.680e+02;SOR=0.798;VQSLOD=10.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,28:54:99:849,0,830 2 238266633 rs4663730 G A 526.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.444;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=6.236;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=0.365;SB=-2.150e+02;SOR=0.122;VQSLOD=9.84;culprit=FS GT:AD:DP:GQ:PL 0/1:20,21:41:99:555,0,642 2 238267058 rs4663731 G A 609.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.173;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=2.977;HaplotypeScore=2.6297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=0.543;SB=-1.630e+02;SOR=1.255;VQSLOD=7.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,23:42:99:638,0,398 2 238419611 rs2292879 A G 2227.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.749;DB;DP=219;Dels=0.00;ExcessHet=3.0103;FS=7.846;HaplotypeScore=9.6346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=-0.381;SB=-8.900e+02;SOR=1.165;VQSLOD=3.52;culprit=DP GT:AD:DP:GQ:PL 0/1:128,90:218:99:2256,0,3324 2 238434249 rs2292881 C T 852.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.171;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=8.368;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-0.724;SB=-3.060e+02;SOR=1.317;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 0/1:38,31:69:99:881,0,984 2 238443226 rs2292884 A G 1130.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.206;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=6.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=1.298;SB=-5.040e+02;SOR=1.232;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 0/1:63,50:113:99:1159,0,1713 2 238443407 rs2292885 G C 844.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.656;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=1.097;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=-0.847;SB=-3.410e+02;SOR=0.488;VQSLOD=9.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,33:61:99:873,0,794 2 238443509 rs12471827 A G 237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.031;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=-1.021;SB=0.00;SOR=0.818;VQSLOD=7.85;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:266,0,223 2 238449007 rs3817362 T C 466.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=0.304;SB=-3.180e+02;SOR=0.519;VQSLOD=10.37;culprit=FS GT:AD:DP:GQ:PL 0/1:12,19:31:99:495,0,330 2 238449023 rs3817363 T C 463.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.447;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=1.193;SB=-2.880e+02;SOR=0.460;VQSLOD=8.66;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,18:30:99:492,0,292 2 238449107 . A G 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.623;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.03;ReadPosRankSum=-1.262;SB=-1.360e+02;SOR=1.445;VQSLOD=5.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,12:26:99:315,0,384 2 238451260 . G C 622.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.756;DP=64;Dels=0.00;ExcessHet=3.0103;FS=5.660;HaplotypeScore=1.6498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.73;ReadPosRankSum=1.056;SB=-3.350e+02;SOR=0.253;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 0/1:36,28:64:99:651,0,993 2 238494681 rs34052613 G A 2186.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;DB;DP=166;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=0.510;SB=-1.460e+03;SOR=0.723;VQSLOD=7.78;culprit=DP GT:AD:DP:GQ:PL 0/1:75,91:166:99:2215,0,1747 2 238499727 rs6755617 G A 64.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.3913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.40;ReadPosRankSum=-0.651;SB=-3.201e+01;SOR=0.223;VQSLOD=9.72;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:93:93,0,249 2 238499863 . A AAATTCTTCAGGAGACTCT 3589.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.846;DP=47;ExcessHet=3.0103;FS=2.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.73;ReadPosRankSum=1.653;SB=-1.024e+03;SOR=1.154;VQSLOD=5.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:29,18:47:99:3627,0,5339 2 238499866 rs114742872 C T 400.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.882;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.238;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.71;ReadPosRankSum=1.741;SB=-1.480e+02;SOR=1.055;VQSLOD=5.15;culprit=QD GT:AD:DP:GQ:PL 0/1:29,17:46:99:429,0,841 2 238499874 rs2292870 C T 909.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.536;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=5.259;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=-0.671;SB=-2.420e+02;SOR=1.435;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 0/1:32,33:65:99:938,0,876 2 238499997 rs6745883 T C 960.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=0.541;SB=-4.930e+02;SOR=0.613;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:38,36:74:99:989,0,895 2 238499998 rs6742869 A G 994.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.270;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=0.568;SB=-4.130e+02;SOR=0.613;VQSLOD=9.34;culprit=FS GT:AD:DP:GQ:PL 0/1:38,36:74:99:1023,0,894 2 238500046 rs6742960 A G 809.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.729;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=0.518;SB=-2.160e+02;SOR=0.484;VQSLOD=10.20;culprit=FS GT:AD:DP:GQ:PL 0/1:22,26:48:99:838,0,571 2 238500642 rs10084167 A G 183.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.580;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-0.837;SB=-6.505e+01;SOR=0.368;VQSLOD=9.71;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:212,0,163 2 238503559 rs2325806 C G 1296.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.864;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-1.129;SB=-5.910e+02;SOR=0.690;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:44,52:96:99:1325,0,1186 2 238536392 rs10184871 T G 141.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=2.276;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=0.935;SB=-6.400e+01;SOR=1.535;VQSLOD=6.08;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,7:14:99:170,0,172 2 238632377 rs3769085 A C 610.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.356;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=0.287;SB=-1.610e+02;SOR=0.899;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 0/1:37,25:62:99:639,0,1013 2 238636698 rs150738667 GGTCT G 1199.73 PASS AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.93;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.77;RPA=2,1;RU=GTCT;SB=-3.777e+01;SOR=4.712;STR;VQSLOD=6.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:23:63:1237,63,0 2 238643990 rs3769077 G A 2784.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.01;SB=-1.088e+03;SOR=1.664;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,87:87:99:2813,205,0 2 238644136 rs3820810 A G 997.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.35;SB=-4.690e+02;SOR=1.244;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:75:1026,75,0 2 238656936 rs2304431 A G 317.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.48;SB=-1.215e+02;SOR=1.981;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:346,27,0 2 238658085 rs2304432 C G 534.41 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;MQRankSum=0.500;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.44;ReadPosRankSum=0.612;SB=-3.677e+01;SOR=2.833;VQSLOD=1.15;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,16:17:8:562,8,0 2 238659708 rs3769062 C T 586.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;SB=-7.297e+01;SOR=3.383;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:45:615,45,0 2 238661832 rs733579 T C 809.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=-3.577e+01;SOR=4.804;VQSLOD=7.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:63:838,63,0 2 238661870 rs3832061 GT G 1098.73 PASS AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.80;RPA=9,8;RU=T;SB=-2.400e+02;SOR=2.476;STR;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:42:99:1136,123,0 2 238662154 rs3769061 A G 772.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.60;SB=-1.255e+02;SOR=3.352;VQSLOD=5.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:801,60,0 2 238667501 . G GA 571.73 PASS AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.23;RPA=8,9;RU=A;SB=-9.151e+01;SOR=3.160;STR;VQSLOD=3.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:26:63:609,63,0 2 238668802 rs3213868 A G 4293.77 PASS AC=2;AF=1.00;AN=2;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.01;SB=-2.335e+03;SOR=1.218;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,148:148:99:4322,325,0 2 238671117 rs734388 A G 2479.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.55;SB=-1.414e+03;SOR=1.046;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:90:99:2508,187,0 2 238671170 rs3739047 G A 2699.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.68;SB=-1.582e+03;SOR=0.887;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2728,202,0 2 238671190 rs3739046 A G 2388.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.62;SB=-1.106e+03;SOR=1.131;VQSLOD=5.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2417,175,0 2 238671191 rs3739045 G A 2312.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.01;SB=-1.051e+03;SOR=1.179;VQSLOD=5.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2341,175,0 2 238671196 rs3739044 T C 2257.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.25;SB=-1.086e+03;SOR=1.244;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2286,175,0 2 238671328 rs868119 A G 2075.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-1.058e+03;SOR=0.804;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:2104,154,0 2 238671609 . A G 5374.77 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=30.54;SB=-3.509e+03;SOR=0.763;VQSLOD=3.68;culprit=DP GT:AD:DP:GQ:PL 1/1:0,176:176:99:5403,382,0 2 238671889 rs7609062 G A 824.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-3.940e+02;SOR=1.136;VQSLOD=7.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:63:853,63,0 2 238671940 . C T 731.77 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.85;SB=-3.500e+02;SOR=0.990;VQSLOD=4.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:57:760,57,0 2 238672703 rs3739038 C G 1757.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.96;SB=-5.180e+02;SOR=2.124;VQSLOD=5.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1786,132,0 2 238672795 rs12477133 C T 651.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;SB=-1.513e+02;SOR=2.531;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:51:680,51,0 2 238678547 rs150020848 G A 1013.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=0.226;SB=-5.460e+02;SOR=0.708;VQSLOD=8.46;culprit=FS GT:AD:DP:GQ:PL 0/1:55,40:95:99:1042,0,1350 2 238678875 rs6719679 A G 360.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.32;SB=0.00;SOR=4.804;VQSLOD=8.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:389,30,0 2 238683166 rs2279644 G A 1774.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.774;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.63;ReadPosRankSum=1.733;SB=-1.113e+03;SOR=0.236;VQSLOD=5.44;culprit=FS GT:AD:DP:GQ:PL 1/1:1,61:62:99:1803,129,0 2 238688244 rs1151798 A G 417.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.81;SB=-8.297e+01;SOR=2.670;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:446,33,0 2 238730317 rs62196084 A G 226.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.136;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=-1.051;SB=-7.997e+01;SOR=0.136;VQSLOD=9.53;culprit=SOR GT:AD:DP:GQ:PL 0/1:6,9:15:99:255,0,188 2 238733016 rs4663795 G A 1201.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=-0.068;SB=-3.920e+02;SOR=0.682;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:56,42:98:99:1230,0,1626 2 238742837 rs55675197 T C 1006.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.733;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=0.753;SB=-5.290e+02;SOR=0.617;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:21,37:58:99:1035,0,583 2 238896494 . C CATT,CAT 1136.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQ0=0;QD=25.52;SB=-3.770e+02;SOR=1.402;VQSLOD=3.44;culprit=FS GT:AD:DP:GQ:PL 1/2:0,11,9:22:99:1174,180,114,234,0,168 2 238898809 rs4663276 G A 352.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.40;SB=-3.577e+01;SOR=3.611;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:381,33,0 2 238903310 rs10203101 C T 1968.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.25;SB=-8.690e+02;SOR=1.467;VQSLOD=7.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1997,147,0 2 238903399 rs12615308 G A 982.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.439;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=1.764;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=0.946;SB=-6.450e+02;SOR=0.581;VQSLOD=8.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,43:85:99:1011,0,1072 2 238925461 rs35692652 TC T 720.73 PASS AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.27;RPA=2,1;RU=C;SB=0.00;SOR=5.784;STR;VQSLOD=8.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:20:51:758,51,0 2 238925473 rs2875817 G A 486.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.77;SB=0.00;SOR=5.421;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:515,42,0 2 238939000 rs6431578 G A 789.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.59;SB=-1.573e+02;SOR=3.014;VQSLOD=6.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:63:818,63,0 2 238949743 rs708078 G A 439.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=0.00;SOR=5.136;VQSLOD=8.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:468,36,0 2 238969964 rs2250185 T C 1670.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.32;SB=-1.039e+03;SOR=0.950;VQSLOD=5.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1699,126,0 2 238972827 rs821480 T C 1265.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.40;SB=-1.245e+02;SOR=4.294;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:96:1294,96,0 2 238991733 rs2243417 C A 6212.77 PASS AC=2;AF=1.00;AN=2;DB;DP=208;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8270;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.87;SB=-3.025e+03;SOR=1.413;VQSLOD=5.15;culprit=DP GT:AD:DP:GQ:PL 1/1:0,208:208:99:6241,457,0 2 239016539 rs935415 C G 2827.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;DB;DP=249;Dels=0.00;ExcessHet=3.0103;FS=0.460;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=0.439;SB=-1.960e+03;SOR=0.713;VQSLOD=5.19;culprit=DP GT:AD:DP:GQ:PL 0/1:133,116:249:99:2856,0,3392 2 239016640 rs878134 G T 1527.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.047;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=6.467;HaplotypeScore=2.5677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=1.575;SB=-3.390e+02;SOR=1.350;VQSLOD=5.35;culprit=FS GT:AD:DP:GQ:PL 0/1:66,54:120:99:1556,0,1781 2 239025523 rs11903074 T C 1237.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.704;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.840;HaplotypeScore=1.9994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=-1.511;SB=-6.220e+02;SOR=0.485;VQSLOD=9.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,51:90:99:1266,0,942 2 239025758 . G A 392.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.353;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=17.08;ReadPosRankSum=-1.616;SB=0.00;SOR=0.963;VQSLOD=7.73;culprit=FS GT:AD:DP:GQ:PL 0/1:10,13:23:99:421,0,304 2 239033901 rs10172440 T C 495.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.977;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.079;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=1.445;SB=-2.860e+02;SOR=1.007;VQSLOD=6.68;culprit=QD GT:AD:DP:GQ:PL 0/1:31,22:53:99:524,0,757 2 239034043 rs10170048 A C 183.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.35;ReadPosRankSum=0.785;SB=-2.901e+01;SOR=1.022;VQSLOD=9.02;culprit=QD GT:AD:DP:GQ:PL 0/1:14,8:22:99:212,0,397 2 239036416 rs12692214 T C 909.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.748;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=0.448;SB=-3.770e+02;SOR=0.567;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:29,32:61:99:938,0,655 2 239039637 rs4663845 T C 270.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.511;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.52;ReadPosRankSum=0.537;SB=-1.340e+02;SOR=0.364;VQSLOD=8.90;culprit=QD GT:AD:DP:GQ:PL 0/1:24,12:36:99:299,0,629 2 239039841 rs10172220 A G 301.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.974;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=9.478;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.02;ReadPosRankSum=-1.292;SB=-2.090e+02;SOR=0.333;VQSLOD=5.26;culprit=QD GT:AD:DP:GQ:PL 0/1:26,17:43:99:330,0,817 2 239039896 rs10182906 G C 436.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=9.523;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.33;ReadPosRankSum=0.818;SB=-2.590e+02;SOR=0.490;VQSLOD=5.40;culprit=QD GT:AD:DP:GQ:PL 0/1:47,22:69:99:465,0,1217 2 239040187 rs12692215 T C 1173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.607;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-0.453;SB=-4.980e+02;SOR=0.624;VQSLOD=9.28;culprit=FS GT:AD:DP:GQ:PL 0/1:45,38:84:99:1202,0,1216 2 239050033 rs12692216 C T 1718.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.858;DB;DP=128;Dels=0.00;ExcessHet=3.0103;FS=1.419;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=0.220;SB=-8.380e+02;SOR=0.850;VQSLOD=7.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,68:128:99:1747,0,1687 2 239053436 rs12623661 G C 194.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=0.908;SB=-3.876e+01;SOR=0.399;VQSLOD=9.17;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:86:223,0,86 2 239053685 rs13013945 A C 444.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.993;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.342;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=0.663;SB=-2.750e+02;SOR=0.368;VQSLOD=9.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,21:39:99:473,0,497 2 239054504 rs11674140 G T 2354.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.03;SB=-1.350e+03;SOR=0.954;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2383,175,0 2 239056794 rs13009435 C T 135.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.063;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.79;ReadPosRankSum=0.154;SB=-6.600e+01;SOR=0.627;VQSLOD=9.29;culprit=QD GT:AD:DP:GQ:PL 0/1:12,8:20:99:164,0,332 2 239059484 rs7605194 T C 1754.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.75;SB=-5.160e+02;SOR=2.049;VQSLOD=7.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1783,132,0 2 239070376 rs72989058 C T 1611.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.612;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.688;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=0.905;SB=-9.690e+02;SOR=0.822;VQSLOD=7.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,64:118:99:1640,0,1460 2 239072506 rs117194634 G A 258.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.8381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=1.451;SB=-1.250e+02;SOR=0.859;VQSLOD=9.49;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:19:99:287,0,165 2 239072806 rs111241405 G T 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=0.906;SB=-6.300e+01;SOR=1.609;VQSLOD=5.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,7:15:99:207,0,208 2 239075935 rs3820817 A G 867.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.992;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.198;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.50;ReadPosRankSum=-0.431;SB=-5.010e+02;SOR=0.693;VQSLOD=5.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,32:56:99:896,0,663 2 239081996 rs11309913 TC T 93.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;DB;DP=16;ExcessHet=3.0103;FS=2.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.86;RPA=7,6;RU=C;ReadPosRankSum=0.341;SB=-9.732e-01;SOR=1.445;STR;VQSLOD=5.44;culprit=QD GT:AD:DP:GQ:PL 0/1:11,5:16:99:131,0,354 2 239082040 rs7585597 T C 1007.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=61.04;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.51;SB=-3.320e+02;SOR=2.093;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:75:1036,75,0 2 239082166 . G GC 2697.73 PASS AC=2;AF=1.00;AN=2;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.64;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.02;RPA=2,3;RU=C;SB=-1.325e+03;SOR=0.754;STR;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:67:99:2735,199,0 2 239082526 rs3739059 C T 194.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.531;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=-0.309;SB=-3.300e+01;SOR=0.458;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:16:99:223,0,232 2 239092474 rs2305173 C T 524.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.029;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.732;SB=-1.990e+02;SOR=0.916;VQSLOD=8.18;culprit=FS GT:AD:DP:GQ:PL 0/1:20,20:40:99:553,0,606 2 239092544 rs74653364 G A 650.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.161;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=-1.029;SB=-1.860e+02;SOR=0.748;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:17,21:38:99:679,0,514 2 239092893 rs12623230 C T 128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-1.778;SB=0.00;SOR=0.693;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:157,0,152 2 239093788 rs6431588 T C 782.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-1.613e+02;SOR=2.737;VQSLOD=7.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:811,60,0 2 239096955 rs72991006 C G 512.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.509;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.703;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=-0.479;SB=-1.580e+02;SOR=0.368;VQSLOD=9.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:13,20:33:99:541,0,401 2 239098594 rs34371548 T C 746.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.467;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.950;HaplotypeScore=1.7262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=0.473;SB=-4.490e+02;SOR=0.538;VQSLOD=9.17;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,32:65:99:775,0,905 2 239133843 rs35648651 A G 1388.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.564;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=10.741;HaplotypeScore=7.1418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.564;SB=-5.680e+02;SOR=1.324;VQSLOD=4.90;culprit=FS GT:AD:DP:GQ:PL 0/1:65,50:115:99:1417,0,1656 2 239134056 rs7572285 A G 1109.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=0.759;SB=-6.710e+02;SOR=0.666;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:60,46:106:99:1138,0,1663 2 239139907 rs4663298 G A 1414.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=10.204;HaplotypeScore=2.7865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=1.477;SB=-2.420e+02;SOR=1.811;VQSLOD=5.00;culprit=FS GT:AD:DP:GQ:PL 0/1:47,49:96:99:1443,0,1241 2 239139920 rs11688755 T C 923.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.475;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=11.958;HaplotypeScore=3.6546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=-0.405;SB=-4.150e+02;SOR=0.130;VQSLOD=5.44;culprit=FS GT:AD:DP:GQ:PL 0/1:44,38:82:99:952,0,1289 2 239141505 rs11689432 A G 604.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-2.511e+02;SOR=1.609;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:45:633,45,0 2 239148996 rs140615710 CCCGT C 1045.73 PASS AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.73;RPA=5,4;RU=CCGT;SB=-3.211e+02;SOR=1.739;STR;VQSLOD=5.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:19:51:1083,51,0 2 239159178 rs3739062 C T 281.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.045;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=4.925;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-1.284;SB=-1.300e+02;SOR=0.090;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:13,13:26:99:310,0,417 2 239165633 rs2304671 C T 890.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.224;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.977;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-1.956;SB=-3.420e+02;SOR=0.858;VQSLOD=6.91;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:29,35:64:99:919,0,669 2 239165636 rs2304670 C T 669.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.933;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.014;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=1.779;SB=-3.650e+02;SOR=0.487;VQSLOD=9.49;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:34,29:63:99:698,0,918 2 239168448 rs2304668 G A 203.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=-0.001;SB=-6.400e+01;SOR=0.892;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:232,0,160 2 239171553 . C T 892.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.483;DP=86;Dels=0.00;ExcessHet=3.0103;FS=4.147;HaplotypeScore=4.6621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.38;ReadPosRankSum=-0.580;SB=-3.410e+02;SOR=1.148;VQSLOD=5.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,37:86:99:921,0,1221 2 239179914 rs2304676 G A 647.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.201;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=-0.078;SB=-6.500e+01;SOR=0.434;VQSLOD=10.33;culprit=FS GT:AD:DP:GQ:PL 0/1:19,22:41:99:676,0,552 2 239180200 rs71426511 G A 777.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.404;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=4.874;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=-0.333;SB=-8.500e+01;SOR=1.561;VQSLOD=6.34;culprit=FS GT:AD:DP:GQ:PL 0/1:36,27:64:99:806,0,1019 2 239181851 rs35193535 T TCA 2650.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;DB;DP=154;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.07;MQ0=0;MQRankSum=1.176;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.80;RPA=1,2;RU=CA;ReadPosRankSum=-0.213;SB=-9.980e+02;SOR=0.792;STR;VQSLOD=0.568;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:81,60:154:99:2688,0,3608 2 239181860 rs13033501 G A 1560.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.251;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=0.861;SB=-6.630e+02;SOR=0.734;VQSLOD=8.81;culprit=FS GT:AD:DP:GQ:PL 0/1:82,58:141:99:1589,0,2163 2 239181904 rs2304674 A G 3811.77 PASS AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.58;SB=-1.187e+03;SOR=1.981;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,117:117:99:3840,280,0 2 239186589 rs2304672 G C 167.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.762;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.32;ReadPosRankSum=0.609;SB=-9.732e-01;SOR=1.536;VQSLOD=6.63;culprit=QD GT:AD:DP:GQ:PL 0/1:12,6:18:99:196,0,392 2 239229372 rs13398676 C A 191.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.664;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=1.829;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=0.076;SB=-1.260e+02;SOR=0.904;VQSLOD=6.75;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,10:20:99:220,0,245 2 239242719 . G GT 134.77 PASS AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=19.25;RPA=14,15;RU=T;SB=-2.977e+01;SOR=2.584;STR;VQSLOD=5.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,7:10:21:172,21,0 2 239261866 rs3213874 G A 687.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=16.075;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=0.303;SB=-4.100e+01;SOR=3.033;VQSLOD=4.23;culprit=FS GT:AD:DP:GQ:PL 0/1:28,21:49:99:716,0,686 2 239307245 rs571820 A G 156.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=1.393;SB=-8.097e+01;SOR=0.148;VQSLOD=9.96;culprit=SOR GT:AD:DP:GQ:PL 0/1:4,7:11:99:185,0,116 2 239976697 rs66928221 T TTATTA 317.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;DB;DP=17;ExcessHet=3.0103;FS=5.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.680;SB=-8.076e+01;SOR=0.042;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:11,5:17:99:355,0,813 2 240003870 rs1063639 G A 437.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.333;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=-0.999;SB=-2.630e+02;SOR=0.922;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:23,19:42:99:466,0,589 2 240016488 rs62189551 A G 114.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.183;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=-0.156;SB=0.00;SOR=0.446;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:143,0,229 2 240024654 rs6543510 G A 269.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.538;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=0.627;SB=-2.501e+01;SOR=1.051;VQSLOD=10.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,10:22:99:298,0,361 2 240048505 rs3828206 G A 844.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.568;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=-0.585;SB=-3.180e+02;SOR=0.653;VQSLOD=9.61;culprit=FS GT:AD:DP:GQ:PL 0/1:19,32:51:99:873,0,474 2 240048544 rs3791448 C T 625.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.911;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=0.909;SB=-6.700e+01;SOR=0.646;VQSLOD=9.59;culprit=FS GT:AD:DP:GQ:PL 0/1:14,21:35:99:654,0,420 2 240048581 rs3791449 T G 348.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.344;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=1.598;SB=0.00;SOR=0.892;VQSLOD=10.08;culprit=FS GT:AD:DP:GQ:PL 0/1:9,11:20:99:377,0,290 2 240055901 rs2278778 G A 684.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.77;SB=-3.020e+02;SOR=1.426;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:54:713,54,0 2 240066417 rs2290087 A G 2815.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.88;SB=-1.848e+03;SOR=0.753;VQSLOD=5.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:2844,211,0 2 240066526 rs2290088 T C 1724.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.23;SB=-4.670e+02;SOR=2.683;VQSLOD=5.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1753,138,0 2 240078587 rs5839723 GAC G 2358.73 PASS AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.77;RPA=3,2;RU=AC;SB=-3.081e+02;SOR=3.702;STR;VQSLOD=4.29;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,49:56:99:2396,147,0 2 240083528 rs3791515 G A 914.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.59;SB=-3.610e+02;SOR=1.284;VQSLOD=5.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:33:69:943,69,0 2 240085403 rs11124182 C A 503.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.63;SB=-1.175e+02;SOR=2.712;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:39:532,39,0 2 240085674 rs13010577 C T 1608.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-6.010e+02;SOR=1.747;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1637,126,0 2 240085795 rs2290089 A C 374.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.07;SB=0.00;SOR=4.977;VQSLOD=8.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:403,33,0 2 240111477 rs531993 A T 535.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.49;SB=-4.176e+01;SOR=4.174;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:45:564,45,0 2 240219669 rs11696099 C T 295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.004;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.323;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.21;ReadPosRankSum=-0.407;SB=-1.650e+02;SOR=0.637;VQSLOD=5.04;culprit=QD GT:AD:DP:GQ:PL 0/1:28,13:41:99:324,0,655 2 240323661 rs1709851 C A 1479.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.46;SB=-7.820e+02;SOR=1.136;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1508,108,0 2 240323905 . T TG 5658.73 PASS AC=2;AF=1.00;AN=2;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.04;RPA=1,2;RU=G;SB=-2.447e+03;SOR=0.998;STR;VQSLOD=5.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,125:126:99:5696,376,0 2 240500173 rs10187580 T C 2594.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.124;DB;DP=187;Dels=0.00;ExcessHet=3.0103;FS=8.300;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=-0.567;SB=-1.041e+03;SOR=0.315;VQSLOD=5.18;culprit=DP GT:AD:DP:GQ:PL 0/1:91,95:187:99:2623,0,2522 2 240500249 rs59626274 C T 3011.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.245;SB=-1.714e+03;SOR=0.730;VQSLOD=4.88;culprit=DP GT:AD:DP:GQ:PL 0/1:133,116:250:99:3040,0,3441 2 240500413 rs6543554 A G 4949.77 PASS AC=2;AF=1.00;AN=2;DB;DP=157;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.53;SB=-2.379e+03;SOR=1.026;VQSLOD=6.22;culprit=DP GT:AD:DP:GQ:PL 1/1:0,157:157:99:4978,373,0 2 240500437 rs10180205 C T 1712.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.904;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-1.227;SB=-9.670e+02;SOR=0.664;VQSLOD=8.43;culprit=FS GT:AD:DP:GQ:PL 0/1:82,65:147:99:1741,0,2145 2 240504878 rs6719279 C T 3059.77 PASS AC=2;AF=1.00;AN=2;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9565;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=-1.308e+03;SOR=1.586;VQSLOD=5.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,99:99:99:3088,226,0 2 240684619 rs6543576 G A 1877.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;DB;DP=148;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=1.157;SB=-1.221e+03;SOR=0.639;VQSLOD=8.28;culprit=FS GT:AD:DP:GQ:PL 0/1:73,75:148:99:1906,0,1815 2 240701886 rs10189627 T C 981.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.625;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=0.873;SB=-3.380e+02;SOR=0.696;VQSLOD=8.56;culprit=FS GT:AD:DP:GQ:PL 0/1:38,35:73:99:1010,0,980 2 240721384 rs2898872 C A 455.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.55;SB=-3.377e+01;SOR=3.912;VQSLOD=8.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:484,39,0 2 240721598 rs12613844 T G 1707.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.097;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=4.840;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=-0.151;SB=-7.750e+02;SOR=1.230;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 0/1:49,64:113:99:1736,0,1186 2 240721728 rs1574030 A G 2677.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.66;SB=-9.430e+02;SOR=1.981;VQSLOD=6.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:83:99:2706,199,0 2 240721814 rs1574029 A C 1060.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.91;SB=-4.650e+02;SOR=1.670;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:78:1089,78,0 2 241066280 rs4292120 C T 1341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.858;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.825;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-1.312;SB=-6.240e+02;SOR=0.553;VQSLOD=9.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,52:94:99:1370,0,997 2 241073450 rs3749078 C T 560.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.152;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-0.438;SB=-1.930e+02;SOR=0.803;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:29,24:53:99:589,0,844 2 241075809 rs13406410 C T 342.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.884;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=-0.441;SB=-1.381e+02;SOR=0.160;VQSLOD=8.75;culprit=SOR GT:AD:DP:GQ:PL 0/1:3,14:17:69:371,0,69 2 241078945 rs903759 C T 100.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-1.133;SB=0.00;SOR=0.412;VQSLOD=9.96;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:129,0,191 2 241079884 rs508944 A T 482.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.113;DB;DP=42;Dels=0.02;ExcessHet=3.0103;FS=1.529;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=1.073;SB=-9.000e+01;SOR=1.101;VQSLOD=7.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,19:41:99:511,0,651 2 241390516 rs3828336 C T 2061.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.45;SB=-1.345e+03;SOR=0.693;VQSLOD=5.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2090,150,0 2 241392491 rs4268920 A G 302.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.53;SB=-1.473e+02;SOR=1.270;VQSLOD=5.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:331,24,0 2 241395353 rs12695019 A G 508.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.26;SB=-1.941e+02;SOR=1.863;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:39:537,39,0 2 241395503 rs2292832 T C 644.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.70;SB=-3.540e+02;SOR=0.990;VQSLOD=7.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:51:673,51,0 2 241396765 rs10933605 G A 876.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.430;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=4.891;HaplotypeScore=2.9322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.759;SB=-2.630e+02;SOR=1.358;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 0/1:40,33:73:99:905,0,886 2 241396969 rs11680576 T C 626.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.942;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=3.873;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=0.139;SB=-5.900e+01;SOR=1.656;VQSLOD=6.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,22:42:99:655,0,543 2 241397326 rs13430967 G C 273.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.957;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-0.465;SB=-2.901e+01;SOR=0.465;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:13,10:24:99:302,0,379 2 241397331 rs13390118 C G 290.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.964;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=2.291;HaplotypeScore=5.7321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=-1.081;SB=-1.020e+02;SOR=0.120;VQSLOD=8.24;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,12:26:99:319,0,404 2 241401741 rs1042829 C T 486.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-0.222;SB=-2.700e+02;SOR=0.733;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:26,20:46:99:515,0,632 2 241402631 rs76543431 A G 147.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-1.831;SB=0.00;SOR=0.859;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:176,0,167 2 241402836 rs150681136 G A 1232.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.724;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=1.621;HaplotypeScore=2.6927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=0.820;SB=-6.760e+02;SOR=0.924;VQSLOD=7.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,48:100:99:1261,0,1311 2 241403014 rs881029 T C 376.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-2.262;SB=-3.200e+01;SOR=0.910;VQSLOD=9.67;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:17,13:30:99:405,0,493 2 241404213 rs41266965 T C 1551.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.596;DB;DP=127;Dels=0.00;ExcessHet=3.0103;FS=2.643;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=-1.982;SB=-4.300e+02;SOR=0.978;VQSLOD=6.91;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:69,58:127:99:1580,0,2029 2 241404317 rs2229458 C T 736.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.284;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=1.076;HaplotypeScore=3.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=1.034;SB=-4.180e+02;SOR=0.465;VQSLOD=9.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,28:53:99:765,0,652 2 241404758 rs10188712 G A 132.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.103;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.99;ReadPosRankSum=0.834;SB=-1.709e+01;SOR=0.784;VQSLOD=9.13;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:161,0,468 2 241405528 rs2228331 A G 613.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.751;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.260;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQ0=0;MQRankSum=1.037;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=-0.407;SB=-2.860e+02;SOR=1.018;VQSLOD=0.298;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,27:54:99:642,0,717 2 241439326 rs12994525 G C 757.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.330;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.101;SB=-2.340e+02;SOR=0.769;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:30,28:58:99:786,0,835 2 241439329 rs12994526 G T 745.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.270;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.218;SB=-2.250e+02;SOR=0.769;VQSLOD=9.25;culprit=FS GT:AD:DP:GQ:PL 0/1:30,28:58:99:774,0,792 2 241439337 rs12994534 G A 793.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=1.078;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-0.296;SB=-2.510e+02;SOR=0.953;VQSLOD=7.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,32:62:99:822,0,797 2 241440020 rs12986801 T C 2064.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.078;DB;DP=174;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-1.977;SB=-9.250e+02;SOR=0.657;VQSLOD=7.21;culprit=DP GT:AD:DP:GQ:PL 0/1:94,80:174:99:2093,0,2584 2 241448660 rs71889785 G GGATA 1156.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.51;MQ0=0;MQRankSum=2.910;QD=22.83;RPA=1,2;RU=GATA;ReadPosRankSum=0.858;SB=-7.400e+01;SOR=0.569;STR;VQSLOD=1.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,22:38:99:1194,0,762 2 241452068 rs12695024 C T 389.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.796;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=-1.094;SB=0.00;SOR=0.627;VQSLOD=10.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,13:27:99:418,0,487 2 241452198 rs12695025 T C 2541.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.751;DB;DP=164;Dels=0.00;ExcessHet=3.0103;FS=0.616;HaplotypeScore=4.5981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.50;ReadPosRankSum=-1.131;SB=-1.263e+03;SOR=0.812;VQSLOD=8.38;culprit=DP GT:AD:DP:GQ:PL 0/1:65,99:164:99:2570,0,1645 2 241452212 rs12695026 T C 2949.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.643;DB;DP=191;Dels=0.00;ExcessHet=3.0103;FS=1.167;HaplotypeScore=1.9198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=-1.122;SB=-1.528e+03;SOR=0.807;VQSLOD=7.80;culprit=DP GT:AD:DP:GQ:PL 0/1:77,114:191:99:2978,0,1889 2 241463453 rs3821348 C A 1746.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.531;DB;DP=113;Dels=0.00;ExcessHet=3.0103;FS=2.492;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=-0.950;SB=-1.065e+03;SOR=0.454;VQSLOD=9.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,67:113:99:1775,0,1236 2 241463639 rs3796119 C T 1075.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.343;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=8.181;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=-0.006;SB=-6.220e+02;SOR=0.223;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 0/1:31,41:72:99:1104,0,953 2 241465994 rs10933611 T C 380.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.23;SB=-4.276e+01;SOR=3.258;VQSLOD=6.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:409,30,0 2 241471592 rs143294477 AAAG A 708.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.72;RPA=2,1;RU=AAG;ReadPosRankSum=-0.677;SB=-3.680e+02;SOR=0.693;STR;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:24,16:42:99:746,0,1241 2 241492255 rs4676428 G T 4744.77 PASS AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.50;SB=-1.457e+03;SOR=2.056;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,146:146:99:4773,355,0 2 241496567 rs7609147 A G 157.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.685;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.28;ReadPosRankSum=0.000;SB=-3.401e+01;SOR=0.399;VQSLOD=10.12;culprit=FS GT:AD:DP:GQ:PL 0/1:10,7:17:99:186,0,281 2 241500674 rs4676426 C G 157.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.778;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.51;ReadPosRankSum=0.701;SB=-3.500e+01;SOR=0.148;VQSLOD=8.74;culprit=QD GT:AD:DP:GQ:PL 0/1:15,6:21:99:186,0,542 2 241512049 rs2975769 C A 652.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.796;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.753;HaplotypeScore=1.8606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-0.705;SB=-1.420e+02;SOR=0.266;VQSLOD=9.04;culprit=SOR GT:AD:DP:GQ:PL 0/1:26,26:52:99:681,0,828 2 241512470 rs2001823 G T 2054.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-6.860e+02;SOR=1.911;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:2083,153,0 2 241528927 rs55893551 G A 401.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.193;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=4.337;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.15;ReadPosRankSum=1.818;SB=-1.766e+00;SOR=2.694;VQSLOD=5.36;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,12:19:99:430,0,178 2 241531479 rs3792269 A G 647.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.382;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=4.017;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=-0.128;SB=-1.640e+02;SOR=1.589;VQSLOD=6.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,24:60:99:676,0,909 2 241531584 rs2975761 G A 330.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.870;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.509;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=0.312;SB=-2.060e+02;SOR=0.346;VQSLOD=9.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,14:30:99:359,0,524 2 241531737 rs2975762 A G 401.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.362;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-0.228;SB=-2.070e+02;SOR=0.960;VQSLOD=10.29;culprit=FS GT:AD:DP:GQ:PL 0/1:15,15:30:99:430,0,373 2 241533512 rs17846970 T A 261.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.916;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=0.762;SB=-1.720e+02;SOR=0.693;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:6,10:16:99:290,0,160 2 241533559 rs17846971 C T 218.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.224;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=8.675;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-0.458;SB=-6.200e+01;SOR=2.011;VQSLOD=5.52;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:247,0,140 2 241533845 rs2975763 T C 1028.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.032;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.19;ReadPosRankSum=1.678;SB=-1.791e+02;SOR=1.739;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 1/1:1,30:31:60:1057,60,0 2 241534163 rs17846975 G A 146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.948;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.72;ReadPosRankSum=2.108;SB=-9.732e-01;SOR=1.402;VQSLOD=7.76;culprit=QD GT:AD:DP:GQ:PL 0/1:13,6:19:99:175,0,409 2 241536053 rs2953171 C T 387.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.979;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.018;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=0.818;SB=-1.340e+02;SOR=1.370;VQSLOD=5.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,12:21:99:416,0,276 2 241536126 rs7607759 A G 442.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.279;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=0.293;SB=-2.870e+02;SOR=0.473;VQSLOD=9.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,20:38:99:471,0,515 2 241537421 rs3749166 G A 752.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.831;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.064;HaplotypeScore=2.9973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=-0.417;SB=-5.700e+02;SOR=0.509;VQSLOD=9.36;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,33:54:99:781,0,528 2 241537569 rs17846981 T C 583.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.970;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=2.750;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=1.530;SB=-3.520e+02;SOR=0.321;VQSLOD=9.56;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,22:41:99:612,0,553 2 241537617 rs58715822 TC T 659.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;DB;DP=46;ExcessHet=3.0103;FS=7.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;RPA=2,1;RU=C;ReadPosRankSum=1.268;SB=-1.360e+02;SOR=2.022;STR;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 0/1:25,19:46:99:697,0,1002 2 241538061 rs55878652 T C 720.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.845;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=5.608;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.240;SB=-3.920e+02;SOR=0.533;VQSLOD=5.55;culprit=FS GT:AD:DP:GQ:PL 0/1:27,26:53:99:749,0,768 2 241538074 rs2975766 A G 1777.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-1.089e+03;SOR=0.836;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1806,135,0 2 241538229 rs2975767 A G 721.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SB=-7.597e+01;SOR=3.816;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:57:750,57,0 2 241555784 rs12052926 G T 468.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.796;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.8966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=0.808;SB=-6.000e+01;SOR=0.368;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:25,17:42:99:497,0,732 2 241555991 rs1509 G T 1512.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.461;DB;DP=147;Dels=0.00;ExcessHet=3.0103;FS=3.980;HaplotypeScore=2.5975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=-0.273;SB=-8.910e+02;SOR=0.424;VQSLOD=8.02;culprit=DP GT:AD:DP:GQ:PL 0/1:85,62:147:99:1541,0,2219 2 241558397 rs6437353 G A 1123.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.712;HaplotypeScore=5.5973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=-1.710;SB=-5.730e+02;SOR=0.593;VQSLOD=8.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:69,48:117:99:1152,0,1764 2 241558547 rs7582275 G A 641.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.139;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=1.131;SB=-1.560e+02;SOR=0.549;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:35,26:61:99:670,0,1049 2 241569329 rs2975785 A G 782.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.11;SB=-2.840e+02;SOR=1.981;VQSLOD=7.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:63:811,63,0 2 241570249 rs3749172 A C 2560.77 PASS AC=2;AF=1.00;AN=2;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.83;SB=-1.506e+03;SOR=1.095;VQSLOD=4.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,92:92:99:2589,193,0 2 241570391 rs2975786 A G 485.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.70;SB=-4.176e+01;SOR=3.912;VQSLOD=8.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:514,39,0 2 241621866 rs62187796 C T 1706.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.43;SB=-1.003e+03;SOR=0.836;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1735,132,0 2 241622209 rs4081908 T C 1691.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.67;SB=-9.680e+02;SOR=1.123;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1720,129,0 2 241631665 rs76463197 C T 1636.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.74;SB=-1.023e+03;SOR=0.950;VQSLOD=5.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1665,123,0 2 241660978 rs2060193 T C 877.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.76;SB=-1.841e+02;SOR=2.670;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:66:906,66,0 2 241663019 rs2043252 C T 178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=3.282;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.705;SB=-7.697e+01;SOR=0.105;VQSLOD=9.38;culprit=SOR GT:AD:DP:GQ:PL 0/1:5,7:12:99:207,0,168 2 241666418 rs2060194 G A 446.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.388;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=11.491;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=23.51;ReadPosRankSum=1.448;SB=-2.801e+01;SOR=3.767;VQSLOD=4.31;culprit=FS GT:AD:DP:GQ:PL 0/1:6,13:19:99:475,0,115 2 241674222 rs3755533 T C 230.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=1.118;SB=-3.200e+01;SOR=1.314;VQSLOD=8.92;culprit=FS GT:AD:DP:GQ:PL 0/1:11,11:22:99:259,0,299 2 241680633 rs4414678 G T 504.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.65;SB=-7.997e+01;SOR=3.126;VQSLOD=5.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:39:533,39,0 2 241680802 rs56024577 G A 344.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.574;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.637;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-1.431;SB=-9.400e+01;SOR=1.179;VQSLOD=7.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,13:28:99:373,0,433 2 241680900 . C T 70.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.08;ReadPosRankSum=-0.204;SB=-2.302e+01;SOR=0.892;VQSLOD=8.01;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:99:99,0,151 2 241684660 rs1529665 T C 487.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=0.00;SOR=5.283;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:516,39,0 2 241684692 rs7576602 C T 281.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.538;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=1.063;SB=-2.801e+01;SOR=1.270;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:17,12:30:99:310,0,511 2 241686789 rs115376815 G A 590.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=1.686;SB=-2.250e+02;SOR=0.575;VQSLOD=9.15;culprit=FS GT:AD:DP:GQ:PL 0/1:20,24:44:99:619,0,495 2 241689833 rs116600932 G A 2065.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.083;DB;DP=153;Dels=0.00;ExcessHet=3.0103;FS=2.073;HaplotypeScore=6.6276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-0.989;SB=-1.146e+03;SOR=0.542;VQSLOD=7.77;culprit=DP GT:AD:DP:GQ:PL 0/1:70,83:153:99:2094,0,1852 2 241689985 rs117453244 C T 1783.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.656;DB;DP=130;Dels=0.00;ExcessHet=3.0103;FS=0.708;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=1.056;SB=-7.630e+02;SOR=0.525;VQSLOD=7.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:60,70:130:99:1812,0,1396 2 241696840 rs10594016 ATCC A 1314.73 PASS AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.61;RPA=11,10;RU=TCC;SB=-4.490e+02;SOR=1.528;STR;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:46:81:1352,81,0 2 241697656 rs59241293 T C 323.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.710;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=2.269;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=1.702;SB=-8.602e+01;SOR=0.144;VQSLOD=8.26;culprit=SOR GT:AD:DP:GQ:PL 0/1:14,13:27:99:352,0,398 2 241700546 rs74002913 G A 224.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.917;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=-0.204;SB=-4.176e+01;SOR=0.180;VQSLOD=9.45;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,8:16:99:253,0,234 2 241700869 . T C 1700.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.671;DP=125;Dels=0.00;ExcessHet=3.0103;FS=7.048;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.61;ReadPosRankSum=-0.302;SB=-3.240e+02;SOR=1.474;VQSLOD=3.92;culprit=FS GT:AD:DP:GQ:PL 0/1:65,60:125:99:1729,0,1742 2 241702561 rs11688298 T A 2165.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=-7.110e+02;SOR=1.981;VQSLOD=7.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2194,166,0 2 241706227 rs11681427 C T 87.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.1688;MLEAC=1;MLEAF=0.500;MQ=58.31;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=-1.309;SB=-5.400e+01;SOR=0.446;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:5,4:10:99:116,0,166 2 241706874 rs3821346 C T 997.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.073;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.382;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=-0.077;SB=-2.870e+02;SOR=0.446;VQSLOD=9.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,34:52:99:1026,0,468 2 241711784 rs3772060 G C 338.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.024;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.93;ReadPosRankSum=0.352;SB=-4.376e+01;SOR=0.481;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:6,11:17:99:367,0,197 2 241713429 rs2288751 T C 552.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=1.197;SB=-1.766e+00;SOR=1.382;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:22,18:40:99:581,0,688 2 241713646 rs1063353 A G 2354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;DB;DP=212;Dels=0.00;ExcessHet=3.0103;FS=2.416;HaplotypeScore=2.9034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=1.024;SB=-1.209e+03;SOR=0.873;VQSLOD=6.08;culprit=DP GT:AD:DP:GQ:PL 0/1:116,96:212:99:2383,0,2924 2 241722613 rs2288749 A G 234.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.211;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=-0.570;SB=-2.302e+01;SOR=0.919;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:12,9:21:99:263,0,349 2 241725637 rs74002922 G A 180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=2.823;SB=0.00;SOR=1.085;VQSLOD=8.71;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,6:10:99:209,0,113 2 241808347 rs34885252 A G 815.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.987;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.203;HaplotypeScore=2.4964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=1.030;SB=-3.170e+02;SOR=0.519;VQSLOD=8.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,30:50:99:844,0,526 2 241808825 rs140694338 AGGCCTCCCT A 722.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;DB;DP=24;ExcessHet=3.0103;FS=3.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.38;RPA=2,1;RU=GGCCTCCCT;ReadPosRankSum=2.404;SB=-9.732e-01;SOR=1.911;STR;VQSLOD=5.29;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:11,7:24:99:760,0,904 2 241810154 rs117043148 C T 289.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.451;HaplotypeScore=5.0942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.06;ReadPosRankSum=0.565;SB=-1.050e+02;SOR=0.905;VQSLOD=6.40;culprit=QD GT:AD:DP:GQ:PL 0/1:20,12:32:99:318,0,479 2 241810275 . C T 169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.06;ReadPosRankSum=0.765;SB=-3.976e+01;SOR=0.132;VQSLOD=8.44;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,6:13:99:198,0,205 2 241810686 rs117045831 T C 293.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.58;ReadPosRankSum=-0.400;SB=0.00;SOR=1.112;VQSLOD=9.46;culprit=FS GT:AD:DP:GQ:PL 0/1:6,9:15:99:322,0,179 2 241810750 rs74895925 G A 596.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.342;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=0.043;SB=-2.650e+02;SOR=0.482;VQSLOD=9.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,24:39:99:625,0,348 2 241810957 rs10196315 C T 266.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.760;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=0.123;SB=-9.700e+01;SOR=1.347;VQSLOD=7.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,11:23:99:295,0,374 2 241810984 rs77667245 A C 317.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=-0.089;SB=-1.290e+02;SOR=0.627;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:346,0,199 2 241812428 rs117195882 C T 688.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.547;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=1.973;HaplotypeScore=4.5877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=0.077;SB=-3.050e+02;SOR=1.028;VQSLOD=7.00;culprit=QD GT:AD:DP:GQ:PL 0/1:44,30:75:99:717,0,1120 2 241812461 rs34664134 G A 651.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=3.261;HaplotypeScore=3.3694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=-0.708;SB=-4.080e+02;SOR=0.821;VQSLOD=5.58;culprit=QD GT:AD:DP:GQ:PL 0/1:38,32:70:99:680,0,994 2 241812566 rs12997245 G A 496.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.041;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=4.746;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=-0.685;SB=-2.501e+01;SOR=2.215;VQSLOD=5.76;culprit=FS GT:AD:DP:GQ:PL 0/1:17,16:33:99:525,0,446 2 241813187 rs13423821 C T 282.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.931;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.400;SB=0.00;SOR=0.914;VQSLOD=9.89;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:311,0,270 2 241813195 rs75674404 C T 368.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.030;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=-0.107;SB=0.00;SOR=0.990;VQSLOD=9.95;culprit=FS GT:AD:DP:GQ:PL 0/1:9,12:21:99:397,0,293 2 241813554 rs117619103 G A 525.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.632;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.907;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=-0.917;SB=-1.807e+01;SOR=1.179;VQSLOD=7.10;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,18:51:99:554,0,1027 2 241813609 rs78178548 C T 130.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.614;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.69;ReadPosRankSum=0.210;SB=0.00;SOR=0.141;VQSLOD=9.21;culprit=QD GT:AD:DP:GQ:PL 0/1:17,6:23:99:159,0,552 2 241815158 rs377629275 A AG 245.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.65;ReadPosRankSum=1.132;SB=-7.400e+01;SOR=0.941;VQSLOD=8.05;culprit=FS GT:AD:DP:GQ:PL 0/1:11,7:18:99:283,0,449 2 241815308 rs12464426 A G 1679.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.00;SB=-1.045e+03;SOR=0.906;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1708,129,0 2 241815473 rs12695032 G A 1374.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.64;SB=-6.230e+02;SOR=1.562;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1403,102,0 2 241815591 rs4675793 C T 347.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=0.00;SOR=4.977;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:376,30,0 2 241816545 rs6732985 C T 476.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.664;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-0.731;SB=-9.900e+01;SOR=0.869;VQSLOD=10.15;culprit=FS GT:AD:DP:GQ:PL 0/1:20,18:38:99:505,0,605 2 241817322 rs10199038 C T 272.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.521;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=0.925;SB=0.00;SOR=0.465;VQSLOD=10.26;culprit=FS GT:AD:DP:GQ:PL 0/1:12,9:21:99:301,0,403 2 241817516 rs4426527 A G 1528.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.363;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=0.872;SB=-9.340e+02;SOR=0.636;VQSLOD=9.35;culprit=FS GT:AD:DP:GQ:PL 0/1:62,58:120:99:1557,0,1620 2 241818017 rs35566646 G A 240.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.612;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.20;ReadPosRankSum=-0.752;SB=0.00;SOR=0.976;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:269,0,172 2 241818279 rs4273214 C A 898.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.200;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=0.774;HaplotypeScore=1.9329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.25;ReadPosRankSum=-0.741;SB=-4.510e+02;SOR=0.574;VQSLOD=8.95;culprit=QD GT:AD:DP:GQ:PL 0/1:68,41:109:99:927,0,1894 2 241826517 rs12616061 C T 2366.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.558;DB;DP=163;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=0.586;SB=-1.365e+03;SOR=0.659;VQSLOD=8.06;culprit=DP GT:AD:DP:GQ:PL 0/1:68,95:163:99:2395,0,1824 2 241826754 rs10933510 G A 920.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.57;SB=0.00;SOR=6.593;VQSLOD=8.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:78:949,78,0 2 241827618 rs6707763 T C 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.344;SB=-2.601e+01;SOR=0.551;VQSLOD=9.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,6:13:99:171,0,207 2 241827696 rs4675869 A G 975.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.37;SB=-5.790e+02;SOR=1.121;VQSLOD=5.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:75:1004,75,0 2 241828012 rs6708304 T C 1508.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.43;SB=-5.560e+02;SOR=1.863;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1537,108,0 2 241828034 rs6707568 A G 1203.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.974;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.53;ReadPosRankSum=-0.797;SB=-1.841e+02;SOR=2.093;VQSLOD=7.64;culprit=FS GT:AD:DP:GQ:PL 1/1:1,36:37:59:1232,59,0 2 241829610 rs78391362 G A 507.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.959;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=1.715;HaplotypeScore=1.9990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=-0.851;SB=-1.780e+02;SOR=0.314;VQSLOD=9.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,21:36:99:536,0,482 2 241829648 rs74954477 C T 205.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.804;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=2.450;SB=-3.876e+01;SOR=0.180;VQSLOD=8.39;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:8,8:16:99:234,0,240 2 241830944 rs10171053 G T 548.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.389;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=1.055;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.57;ReadPosRankSum=0.103;SB=-2.520e+02;SOR=0.522;VQSLOD=8.77;culprit=QD GT:AD:DP:GQ:PL 0/1:39,25:64:99:577,0,1086 2 241830969 rs10171067 G A 846.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.878;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=-0.880;SB=-3.300e+02;SOR=0.818;VQSLOD=7.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,34:82:99:875,0,1253 2 241831005 rs10195453 C T 1547.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.969;DB;DP=124;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=-1.834;SB=-6.450e+02;SOR=0.756;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 0/1:65,59:124:99:1576,0,1730 2 241831264 rs6737320 G A 921.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.176;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-1.121;SB=-3.590e+02;SOR=0.775;VQSLOD=8.37;culprit=FS GT:AD:DP:GQ:PL 0/1:44,35:79:99:950,0,1260 2 241831296 rs6709469 C G 661.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=1.036;SB=-3.490e+02;SOR=0.653;VQSLOD=8.50;culprit=FS GT:AD:DP:GQ:PL 0/1:41,26:67:99:690,0,1006 2 241834770 rs4293565 A G 347.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-7.597e+01;SOR=2.494;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:376,27,0 2 241834834 rs117274806 C T 368.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.294;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=-0.545;SB=-2.302e+01;SOR=1.781;VQSLOD=5.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,13:25:99:397,0,348 2 241834875 rs3936205 G A 483.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.717;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=0.828;SB=-8.900e+01;SOR=0.982;VQSLOD=9.99;culprit=FS GT:AD:DP:GQ:PL 0/1:17,17:34:99:512,0,458 2 241834944 rs4468809 T C 746.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.906;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=5.456;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=-0.665;SB=-3.740e+02;SOR=1.068;VQSLOD=5.67;culprit=FS GT:AD:DP:GQ:PL 0/1:27,28:55:99:775,0,696 2 241835379 rs12105122 G A 182.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.957;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.081;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-1.377;SB=-9.800e+01;SOR=1.061;VQSLOD=6.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,8:15:99:211,0,227 2 241835421 rs13426919 A G 106.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.463;HaplotypeScore=3.2948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=0.087;SB=-5.600e+01;SOR=0.760;VQSLOD=4.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,5:12:99:135,0,177 2 241835432 rs10933514 G A 67.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.893;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.78;ReadPosRankSum=1.569;SB=-2.701e+01;SOR=1.061;VQSLOD=9.12;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:96:96,0,148 2 241861904 rs4514870 G C 601.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.533;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=1.766;SB=-2.870e+02;SOR=0.391;VQSLOD=8.62;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:11,21:32:99:630,0,285 2 241862251 rs74633770 G A 94.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.92;ReadPosRankSum=-0.908;SB=-2.601e+01;SOR=0.446;VQSLOD=8.49;culprit=QD GT:AD:DP:GQ:PL 0/1:11,5:16:99:123,0,351 2 241865156 rs4675847 T C 1697.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.27;SB=-9.550e+02;SOR=1.085;VQSLOD=4.08;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1726,123,0 2 241868956 rs4407242 G A 373.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=3.128;HaplotypeScore=1.6120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=-1.563;SB=-7.497e+01;SOR=0.123;VQSLOD=9.04;culprit=SOR GT:AD:DP:GQ:PL 0/1:11,14:25:99:402,0,334 2 241870534 rs75494813 G A 918.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.515;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=6.085;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.97;ReadPosRankSum=-0.701;SB=-3.298e+02;SOR=0.134;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 0/1:12,34:46:99:947,0,342 2 241871956 rs12472087 G T 992.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.883;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.026;SB=-1.590e+02;SOR=0.804;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 0/1:42,34:76:99:1021,0,1315 2 241872597 rs4441463 A G 1101.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.60;SB=-4.800e+02;SOR=1.371;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:84:1130,84,0 2 241873180 rs74000152 A G 171.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.264;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=1.633;SB=-9.200e+01;SOR=0.412;VQSLOD=9.38;culprit=FS GT:AD:DP:GQ:PL 0/1:9,7:16:99:200,0,245 2 241874272 rs73107806 C T 226.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=2.256;SB=0.00;SOR=1.179;VQSLOD=9.10;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,8:13:99:255,0,166 2 241874559 rs12618707 T C 493.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.830;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=12.688;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=0.208;SB=-1.227e+01;SOR=3.745;VQSLOD=4.44;culprit=FS GT:AD:DP:GQ:PL 0/1:11,15:26:99:522,0,299 2 241889171 rs12479396 G A 255.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.747;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=-0.123;SB=-1.420e+02;SOR=0.925;VQSLOD=5.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,10:15:99:284,0,126 2 241889798 rs117091177 C T 516.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.175;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.07;ReadPosRankSum=0.686;SB=-1.760e+02;SOR=0.646;VQSLOD=8.95;culprit=FS GT:AD:DP:GQ:PL 0/1:37,20:57:99:545,0,1020 2 241889937 rs4077132 A G 1872.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.14;SB=-9.000e+02;SOR=1.576;VQSLOD=5.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:1901,135,0 2 241898824 rs10169006 A G 2009.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.13;SB=-9.210e+02;SOR=1.385;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2038,147,0 2 241898947 rs10179839 G T 211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=2.881;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=0.325;SB=-8.097e+01;SOR=0.197;VQSLOD=9.50;culprit=SOR GT:AD:DP:GQ:PL 0/1:4,8:12:99:240,0,130 2 241904001 rs11688859 G C 376.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.12;SB=-2.351e+02;SOR=1.112;VQSLOD=4.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:30:405,30,0 2 241904473 rs10432570 G A 94.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.807;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.77;ReadPosRankSum=0.882;SB=-6.400e+01;SOR=0.804;VQSLOD=9.06;culprit=QD GT:AD:DP:GQ:PL 0/1:8,6:14:99:123,0,287 2 241904498 rs10432571 G C 149.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.690;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=0.735;SB=-1.030e+02;SOR=0.527;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:8,7:15:99:178,0,248 2 241905779 rs12466789 A G 830.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.654;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=-0.607;SB=-3.890e+02;SOR=0.811;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:39,32:71:99:859,0,973 2 241907076 rs35798631 C T 134.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=-0.276;SB=-4.076e+01;SOR=0.132;VQSLOD=9.52;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,6:13:99:163,0,255 2 241907690 rs78922927 C T 53.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.84;ReadPosRankSum=1.168;SB=-2.302e+01;SOR=0.631;VQSLOD=8.60;culprit=QD GT:AD:DP:GQ:PL 0/1:11,3:14:82:82,0,312 2 241922430 rs4577273 T C 921.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.152;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-0.651;SB=-5.040e+02;SOR=0.779;VQSLOD=9.05;culprit=FS GT:AD:DP:GQ:PL 0/1:32,36:68:99:950,0,831 2 241925276 . G GC 168.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.55;RPA=6,7;RU=C;ReadPosRankSum=-1.360;SB=-3.201e+01;SOR=0.473;STR;VQSLOD=8.38;culprit=FS GT:AD:DP:GQ:PL 0/1:9,7:16:99:206,0,275 2 241925343 rs4675835 T C 313.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.254;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=-0.494;SB=-2.140e+02;SOR=0.255;VQSLOD=9.55;culprit=SOR GT:AD:DP:GQ:PL 0/1:18,14:32:99:342,0,466 2 241929228 rs10200024 A G 1251.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.83;SB=-2.580e+02;SOR=2.774;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:96:1280,96,0 2 241930624 rs377514338 G A 1395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.238;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.737;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.57;ReadPosRankSum=1.053;SB=-7.010e+02;SOR=0.953;VQSLOD=6.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,57:111:99:1424,0,1341 2 241932399 rs61308140 C G 380.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.560;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=-1.275;SB=-9.300e+01;SOR=1.179;VQSLOD=7.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,14:33:99:409,0,570 2 241976615 rs34203344 CG C 1947.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQ0=0;MQRankSum=1.051;POSITIVE_TRAIN_SITE;QD=16.51;RPA=3,2;RU=G;ReadPosRankSum=1.015;SB=-6.870e+02;SOR=0.664;STR;VQSLOD=2.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,57:119:99:1985,0,2139 2 241979550 rs7571117 T C 1299.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=1.395;SB=-7.380e+02;SOR=0.766;VQSLOD=8.56;culprit=FS GT:AD:DP:GQ:PL 0/1:45,51:96:99:1328,0,1199 2 241987554 rs7590504 G A 317.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.555;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=-0.147;SB=-6.800e+01;SOR=0.446;VQSLOD=9.76;culprit=FS GT:AD:DP:GQ:PL 0/1:17,13:30:99:346,0,568 2 241991029 rs10206324 A G 1824.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;SB=-5.840e+02;SOR=2.226;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:1853,144,0 2 241991896 rs373597652 CAG C 985.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.932;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.28;ReadPosRankSum=-1.392;SB=-1.300e+02;SOR=0.709;VQSLOD=8.63;culprit=FS GT:AD:DP:GQ:PL 0/1:14,25:40:99:1023,0,678 2 241991903 rs28529274 A G 733.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.089;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.5810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=-1.401;SB=-1.050e+02;SOR=1.002;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:13,23:36:99:762,0,333 2 242002828 rs7581709 C T 1140.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.55;SB=-2.141e+02;SOR=2.899;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:90:1169,90,0 2 242004199 rs2286319 G C 1162.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-1.851e+02;SOR=3.193;VQSLOD=6.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:90:1191,90,0 2 242004219 . T TG 1935.73 PASS AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;RPA=1,2;RU=G;SB=-5.120e+02;SOR=2.147;STR;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:44:99:1973,129,0 2 242004570 rs2286320 C T 233.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=6.320;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.256;SB=-9.732e-01;SOR=2.765;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:262,0,202 2 242004602 rs75363045 G A 196.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.502;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.56;ReadPosRankSum=0.420;SB=-3.100e+01;SOR=0.551;VQSLOD=9.28;culprit=QD GT:AD:DP:GQ:PL 0/1:15,8:23:99:225,0,412 2 242007465 rs5839780 AC A 1448.73 PASS AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.57;RPA=2,1;RU=C;SB=-2.781e+02;SOR=2.964;STR;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:99:1486,105,0 2 242009273 rs13000549 G T 738.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.60;SB=-3.377e+01;SOR=4.615;VQSLOD=7.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:57:767,57,0 2 242011151 rs6760731 A G 1269.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.5231;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.41;SB=-5.220e+02;SOR=1.493;VQSLOD=6.35;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:40:99:1298,105,0 2 242011330 rs6746124 C A 3523.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.441;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.9502;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.03;ReadPosRankSum=-1.481;SB=-1.833e+03;SOR=0.679;VQSLOD=5.23;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,109:110:99:3552,262,0 2 242011531 rs10204115 G A 1737.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.55;ReadPosRankSum=0.612;SB=-1.016e+03;SOR=0.635;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 0/1:42,63:105:99:1766,0,969 2 242028741 rs1062748 A G 1938.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=-1.069e+03;SOR=0.950;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1967,141,0 2 242029737 rs61234509 G A 4373.77 PASS AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.55;SB=-2.440e+03;SOR=1.067;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,148:149:99:4402,325,0 2 242033770 rs2302047 T A 1630.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.61;SB=-1.083e+03;SOR=0.800;VQSLOD=5.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1659,120,0 2 242062130 rs2302049 C G 2335.77 PASS AC=2;AF=1.00;AN=2;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.00;SB=-7.410e+02;SOR=2.271;VQSLOD=7.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,73:73:99:2364,184,0 2 242065601 rs75080735 C T 2778.77 PASS AC=2;AF=1.00;AN=2;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.88;SB=-1.182e+03;SOR=1.661;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,93:93:99:2807,202,0 2 242066314 rs2240542 T C 4423.77 PASS AC=2;AF=1.00;AN=2;DB;DP=143;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-2.230e+03;SOR=0.991;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,143:143:99:4452,334,0 2 242072280 rs11684830 G A 1913.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.243;DB;DP=131;Dels=0.00;ExcessHet=3.0103;FS=5.678;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=-1.524;SB=-5.910e+02;SOR=1.222;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 0/1:66,65:131:99:1942,0,1838 2 242072357 rs34401965 G A 2686.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.295;DB;DP=201;Dels=0.00;ExcessHet=3.0103;FS=2.409;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-0.513;SB=-1.662e+03;SOR=0.867;VQSLOD=6.77;culprit=DP GT:AD:DP:GQ:PL 0/1:94,107:201:99:2715,0,2350 2 242075192 rs2108484 A G 469.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.75;SB=0.00;SOR=5.136;VQSLOD=8.98;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:498,36,0 2 242077321 rs11696044 C A 1484.77 PASS AC=2;AF=1.00;AN=2;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-3.130e+02;SOR=2.935;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,45:45:99:1513,114,0 2 242077348 rs10933530 C T 2092.77 PASS AC=2;AF=1.00;AN=2;DB;DP=70;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.90;SB=-7.440e+02;SOR=2.049;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,70:70:99:2121,163,0 2 242078057 rs11681962 T C 3034.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.10;SB=-6.570e+02;SOR=2.993;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:3063,223,0 2 242078334 rs11682122 T C 1392.77 PASS AC=2;AF=1.00;AN=2;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=-1.165e+02;SOR=4.351;VQSLOD=5.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,37:37:99:1421,102,0 2 242079103 rs6728712 G A 753.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.62;SB=-1.583e+02;SOR=2.636;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:60:782,60,0 2 242079233 rs10933531 T C 849.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.92;SB=-7.497e+01;SOR=4.003;VQSLOD=5.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:69:878,69,0 2 242079261 rs11676695 C G 1400.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.74;SB=-4.076e+01;SOR=5.728;VQSLOD=5.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:99:1429,105,0 2 242079553 rs10933532 C T 2499.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-4.480e+02;SOR=2.985;VQSLOD=7.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:79:99:2528,199,0 2 242079613 rs202027540 TGGCGCAATCAGAGCTCACTGCAGC T 1350.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.80;MQ0=0;QD=24.12;SB=0.00;SOR=4.174;VQSLOD=2.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,7:27:21:1388,21,0 2 242082262 rs6709462 T C 579.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-2.081e+02;SOR=1.609;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:45:608,45,0 2 242082480 rs758068 A C 1389.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.36;SB=-7.710e+02;SOR=1.225;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1418,102,0 2 242082559 rs2066941 T C 753.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.32;SB=-1.643e+02;SOR=2.636;VQSLOD=5.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:57:782,57,0 2 242088921 rs3806599 A C 2935.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-9.240e+02;SOR=1.890;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2964,217,0 2 242099961 rs2017989 C T 1158.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=-5.180e+02;SOR=1.387;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:87:1187,87,0 2 242105939 rs11694223 C T 1890.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.76;SB=-2.640e+02;SOR=3.690;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1919,147,0 2 242109007 rs369834586 C T 297.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.140;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.89;ReadPosRankSum=-1.286;SB=-1.765e+00;SOR=1.765;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:326,0,307 2 242121959 rs34186191 G A 1238.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.48;SB=-3.976e+01;SOR=5.610;VQSLOD=3.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:96:1267,96,0 2 242135017 rs12694996 A C 684.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.95;SB=0.00;SOR=5.994;VQSLOD=8.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:54:713,54,0 2 242138490 rs11674264 A G 379.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.21;SB=-4.276e+01;SOR=3.767;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:33:408,33,0 2 242139491 rs2013250 C T 1398.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.41;SB=-6.750e+02;SOR=1.329;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1427,105,0 2 242142737 rs1179530 T C 1343.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.65;SB=-2.461e+02;SOR=3.145;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:99:1372,99,0 2 242176019 rs2305073 T C 545.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.836;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=3.000;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=-1.182;SB=-2.250e+02;SOR=0.330;VQSLOD=9.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,23:43:99:574,0,547 2 242203916 rs11891776 A C 1903.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.29;SB=-9.160e+02;SOR=1.249;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:1932,138,0 2 242206956 rs35334418 C T 2434.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.33;SB=-1.276e+03;SOR=1.179;VQSLOD=6.61;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2463,184,0 2 242438612 . T C 1832.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;DP=135;Dels=0.00;ExcessHet=3.0103;FS=1.356;HaplotypeScore=3.9290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.58;ReadPosRankSum=-0.544;SB=-1.134e+03;SOR=0.784;VQSLOD=6.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:65,70:135:99:1861,0,1717 2 242542298 rs6437269 T C 1541.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.97;SB=-6.997e+01;SOR=5.136;VQSLOD=4.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1570,117,0 2 242556732 rs7580021 G A 1601.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.04;SB=-2.690e+02;SOR=3.442;VQSLOD=5.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1630,129,0 2 242557019 rs7580246 G A 1041.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.73;SB=-1.135e+02;SOR=3.912;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:81:1070,81,0 2 242572846 rs3208142 A G 5041.77 PASS AC=2;AF=1.00;AN=2;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.3722;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=-2.863e+03;SOR=0.978;VQSLOD=6.20;culprit=DP GT:AD:DP:GQ:PL 1/1:0,165:165:99:5070,364,0 2 242573211 rs7424328 T C 3111.77 PASS AC=2;AF=1.00;AN=2;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.41;SB=-1.764e+03;SOR=0.693;VQSLOD=6.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,96:96:99:3140,241,0 2 242593834 . TA T 87.75 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.57;MQ0=0;MQRankSum=1.150;POSITIVE_TRAIN_SITE;QD=7.31;RPA=23,22;RU=A;ReadPosRankSum=-0.618;SB=0.00;SOR=1.981;STR;VQSLOD=2.45;culprit=QD GT:AD:DP:GQ:PL 0/1:3,9:14:24:125,0,24 2 242593877 rs151200016 A G 969.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.4394;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-1.941e+02;SOR=3.056;VQSLOD=5.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:75:998,75,0 2 242598418 rs62190280 G A 776.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.77;SB=-7.597e+01;SOR=4.003;VQSLOD=6.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:60:805,60,0 2 242599074 rs35263340 C T 1034.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-1.573e+02;SOR=3.545;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:84:1063,84,0 2 242610773 rs7601000 T A 1318.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.17;SB=-4.370e+02;SOR=2.038;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,41:41:99:1347,99,0 2 242658779 rs71351113 A T 981.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.8993;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.84;ReadPosRankSum=0.425;SB=-3.050e+02;SOR=0.767;VQSLOD=8.80;culprit=FS GT:AD:DP:GQ:PL 1/1:2,36:38:84:1010,84,0 2 242662761 rs7572153 T C 1724.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.310;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.75;ReadPosRankSum=1.445;SB=-4.440e+02;SOR=1.643;VQSLOD=7.52;culprit=FS GT:AD:DP:GQ:PL 1/1:1,59:60:99:1753,105,0 2 242684394 rs4675884 G C 1464.77 PASS AC=2;AF=1.00;AN=2;DB;DP=41;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9654;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=-8.097e+01;SOR=5.136;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1493,114,0 2 242750231 rs35392728 T G 640.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.269;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-0.435;SB=-1.780e+02;SOR=0.658;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:22,26:48:99:669,0,658 2 242750460 rs34748986 T C 2506.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=-1.031e+03;SOR=1.754;VQSLOD=5.74;culprit=DP GT:AD:DP:GQ:PL 1/1:0,84:84:99:2535,196,0 2 242755374 rs4675992 C G 522.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.051;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.489;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=-0.337;SB=-2.210e+02;SOR=0.446;VQSLOD=9.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,21:33:99:551,0,369 2 242755599 rs66482163 G A 215.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.830;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=3.358;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=1.261;SB=-1.765e+00;SOR=2.093;VQSLOD=5.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,7:13:99:244,0,154 2 242757411 rs36111671 C T 1050.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.351;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=-0.501;SB=-4.590e+02;SOR=0.831;VQSLOD=8.15;culprit=FS GT:AD:DP:GQ:PL 0/1:44,45:89:99:1079,0,1174 2 242758203 rs2293763 T C 1122.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=5.029;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-0.239;SB=-5.970e+02;SOR=1.017;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 0/1:53,46:99:99:1151,0,1393 2 242758326 rs2293761 G A 835.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.216;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.811;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.18;ReadPosRankSum=0.057;SB=-4.760e+02;SOR=0.836;VQSLOD=6.93;culprit=QD GT:AD:DP:GQ:PL 0/1:56,35:91:99:864,0,1512 2 242758475 rs2293759 A G 847.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.56;SB=-2.011e+02;SOR=2.400;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:66:876,66,0 2 242793273 rs2227981 A G 1788.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.52;SB=-5.570e+02;SOR=2.179;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1817,144,0 2 242793433 rs2227982 G A 1345.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.147;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=3.365;HaplotypeScore=1.8410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=-1.352;SB=-6.060e+02;SOR=1.033;VQSLOD=7.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,57:123:99:1374,0,1654 2 242793559 rs6705653 T C 721.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.37;SB=0.00;SOR=6.184;VQSLOD=8.49;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:63:750,63,0 2 242794620 rs34819629 C T 319.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.443;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=5.441;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.84;ReadPosRankSum=2.693;SB=-1.765e+00;SOR=3.442;VQSLOD=4.64;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:4,10:14:77:348,0,77 2 242800900 rs35933396 G A 226.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=0.924;SB=-1.420e+02;SOR=0.534;VQSLOD=9.66;culprit=FS GT:AD:DP:GQ:PL 0/1:6,10:16:99:255,0,139 2 242811866 rs75506522 G C 232.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.746;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.03;ReadPosRankSum=0.519;SB=-1.905e+01;SOR=1.012;VQSLOD=8.56;culprit=QD GT:AD:DP:GQ:PL 0/1:20,9:29:99:261,0,576 2 242812080 rs4973697 T C 683.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.543;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=5.559;HaplotypeScore=3.5528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=-0.074;SB=-4.190e+02;SOR=0.255;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 0/1:31,25:56:99:712,0,847 2 242813124 rs13016102 T C 3998.77 PASS AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.07;SB=-2.365e+03;SOR=0.941;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,133:133:99:4027,286,0 2 242813202 rs28512331 G A 1326.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.930;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=3.624;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=0.215;SB=-4.940e+02;SOR=0.337;VQSLOD=9.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,51:84:99:1355,0,957 2 242813205 rs28380696 A G 1382.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.635;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=2.258;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=0.472;SB=-4.030e+02;SOR=0.395;VQSLOD=9.48;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,51:84:99:1411,0,911 2 242813241 rs28392509 C T 1579.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-3.020e+02;SOR=3.126;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1608,123,0 2 242813276 rs62193136 C T 103.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.587;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.72;ReadPosRankSum=0.431;SB=0.00;SOR=0.105;VQSLOD=9.10;culprit=QD GT:AD:DP:GQ:PL 0/1:17,5:22:99:132,0,556 2 242813299 rs28682292 T C 386.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.677;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.75;ReadPosRankSum=-0.226;SB=0.00;SOR=2.179;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 0/1:4,13:17:99:415,0,105 2 242813859 rs77913832 G C 451.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.972;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.64;ReadPosRankSum=-0.280;SB=-1.810e+02;SOR=0.420;VQSLOD=9.07;culprit=FS GT:AD:DP:GQ:PL 0/1:6,17:23:99:480,0,160 2 242814009 rs7420371 G A 964.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=3.203;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=1.196;SB=-3.610e+02;SOR=1.255;VQSLOD=7.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,36:79:99:993,0,1136 2 242814283 rs28499542 C T 863.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=1.780;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.49;ReadPosRankSum=-1.853;SB=-3.680e+02;SOR=0.936;VQSLOD=6.65;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:56,35:91:99:892,0,1561 2 242814360 rs28378061 T C 849.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.497;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=4.491;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-0.434;SB=-4.010e+02;SOR=1.035;VQSLOD=6.26;culprit=FS GT:AD:DP:GQ:PL 0/1:45,32:77:99:878,0,1198 2 242814463 rs28523279 A T 920.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.894;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=0.556;SB=-5.590e+02;SOR=0.745;VQSLOD=6.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,37:76:99:949,0,1069 2 242814639 rs75447317 T C 979.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=5.532;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-0.727;SB=-4.240e+02;SOR=1.249;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 0/1:51,37:88:99:1008,0,1380 2 242815059 rs28368764 C T 2868.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.633;DB;DP=225;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-1.094;SB=-1.776e+03;SOR=0.669;VQSLOD=6.04;culprit=DP GT:AD:DP:GQ:PL 0/1:109,116:225:99:2897,0,2810 2 242815288 . G C 2071.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.390;DP=147;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.09;ReadPosRankSum=-0.176;SB=-1.203e+03;SOR=0.719;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 0/1:73,74:147:99:2100,0,2124 2 242836535 rs28559662 A G 551.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.704;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.288;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=2.180;SB=-3.410e+02;SOR=0.425;VQSLOD=8.88;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:17,20:37:99:580,0,349 2 242839363 rs4973668 G C 999.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.33;SB=-4.070e+02;SOR=1.536;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:75:1028,75,0 2 242839614 rs13025557 T G 619.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.43;SB=-4.276e+01;SOR=4.407;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:48:648,48,0 2 242841103 rs4973667 C T 349.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.819;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=2.006;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=-0.075;SB=-2.501e+01;SOR=1.329;VQSLOD=6.97;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,12:33:99:378,0,653 2 242945697 rs10191960 T C 542.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.6285;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.67;SB=-3.210e+02;SOR=1.085;VQSLOD=4.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:23:45:571,45,0 2 242946065 . G A 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.895;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=13.6410;MLEAC=1;MLEAF=0.500;MQ=40.11;MQ0=7;MQRankSum=-1.547;QD=4.34;ReadPosRankSum=0.115;SB=-7.700e+01;SOR=1.276;VQSLOD=1.25;culprit=QD GT:AD:DP:GQ:PL 0/1:28,12:42:99:202,0,397 2 242946430 rs7425600 G A 72.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;DB;DP=30;Dels=0.03;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.0669;MLEAC=1;MLEAF=0.500;MQ=41.21;MQ0=2;MQRankSum=-1.716;QD=2.60;ReadPosRankSum=-2.539;SB=-1.776e+00;SOR=0.223;VQSLOD=1.38;culprit=QD GT:AD:DP:GQ:PL 0/1:19,9:29:99:101,0,473 2 243036990 rs140786302 CTT C 531.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.729;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.42;MQ0=0;MQRankSum=2.843;POSITIVE_TRAIN_SITE;QD=31.71;RPA=4,2;RU=T;ReadPosRankSum=-2.024;SB=-1.040e+02;SOR=0.610;STR;VQSLOD=2.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:3,12:15:98:569,0,98 3 239555 rs58240971 C CT,CTTT 577.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.084;DB;DP=24;ExcessHet=3.0103;FS=4.191;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=27.51;RPA=15,16,18;RU=T;ReadPosRankSum=0.331;SB=-2.190e+02;SOR=1.198;STR;VQSLOD=3.93;culprit=MQRankSum GT:AD:DP:GQ:PL 1/2:1,10,10:24:99:615,301,252,256,0,299 3 361508 rs2272522 C T 579.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=12.7277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=-0.805;SB=-3.470e+02;SOR=0.723;VQSLOD=9.54;culprit=FS GT:AD:DP:GQ:PL 0/1:28,26:54:99:608,0,673 3 367757 rs162734 G C 725.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.622;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.088;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=0.393;SB=-5.060e+02;SOR=0.465;VQSLOD=10.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,30:51:99:754,0,490 3 386149 rs67691869 AACAC A 549.74 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.37;RPA=12,10;RU=AC;SB=0.00;SOR=4.804;STR;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:587,30,0 3 386247 rs3736632 C T 2316.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.58;SB=-2.740e+02;SOR=4.080;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2345,178,0 3 391001 rs2272524 G A 955.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.42;SB=-3.976e+01;SOR=5.136;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:75:984,75,0 3 391100 rs13060847 A G 2413.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.95;SB=-1.085e+03;SOR=1.409;VQSLOD=7.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2442,175,0 3 402283 rs150673000 T TA 337.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.481;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.80;MQ0=0;MQRankSum=-0.464;QD=24.12;ReadPosRankSum=-0.973;SB=0.00;SOR=1.329;VQSLOD=2.23;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,9:14:62:375,0,62 3 403288 rs9824311 G A 302.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.92;ReadPosRankSum=0.870;SB=0.00;SOR=1.244;VQSLOD=7.69;culprit=FS GT:AD:DP:GQ:PL 0/1:6,10:16:99:331,0,161 3 403297 rs9839027 C A 321.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.497;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.93;ReadPosRankSum=0.503;SB=0.00;SOR=1.371;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:6,11:17:99:350,0,196 3 403308 rs9824442 G A 441.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.549;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=0.537;SB=-4.076e+01;SOR=0.446;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:9,15:24:99:470,0,284 3 403345 rs9846775 A G 1595.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-2.361e+02;SOR=3.528;VQSLOD=6.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1624,132,0 3 404771 rs4684390 C T 968.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.60;SB=-1.145e+02;SOR=3.767;VQSLOD=5.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:78:997,78,0 3 417979 rs3773381 A G 2591.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.45;SB=-1.248e+03;SOR=1.382;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2620,187,0 3 417994 rs930237 A G 2666.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SB=-1.638e+03;SOR=0.976;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:95:99:2695,202,0 3 418089 rs3773380 C T 3905.77 PASS AC=2;AF=1.00;AN=2;DB;DP=133;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.37;SB=-2.147e+03;SOR=0.941;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,133:133:99:3934,289,0 3 439963 rs6442827 A G 2502.77 PASS AC=2;AF=1.00;AN=2;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6372;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.79;SB=-1.501e+03;SOR=0.843;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,84:84:99:2531,181,0 3 440028 rs6771714 T C 2165.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.882;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.88;ReadPosRankSum=-0.312;SB=-1.034e+03;SOR=1.340;VQSLOD=8.47;culprit=FS GT:AD:DP:GQ:PL 1/1:2,73:75:99:2194,133,0 3 440088 rs6771803 T A 1518.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.64;SB=-4.440e+02;SOR=2.208;VQSLOD=7.07;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1547,117,0 3 447069 rs11705894 C T 930.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.14;SB=0.00;SOR=6.518;VQSLOD=8.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:75:959,75,0 3 1189775 . G T 792.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.616;DP=68;Dels=0.00;ExcessHet=3.0103;FS=1.081;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-0.154;SB=-2.270e+02;SOR=1.013;VQSLOD=6.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,32:68:99:821,0,1013 3 1215013 rs7632166 A C 4138.77 PASS AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-2.553e+03;SOR=0.846;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,138:138:99:4167,295,0 3 1215083 rs13077503 C A 2601.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.35;SB=-9.290e+02;SOR=1.911;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2630,190,0 3 1262474 rs2013828 T C 2405.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.97;SB=-1.579e+03;SOR=0.740;VQSLOD=6.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2434,178,0 3 1320271 rs3732517 G A 1100.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.205;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=1.933;HaplotypeScore=2.8329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=-2.295;SB=-2.690e+02;SOR=0.963;VQSLOD=7.27;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:58,43:101:99:1129,0,1730 3 1337162 rs2063243 A G 589.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.13;SB=0.00;SOR=5.670;VQSLOD=8.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:618,48,0 3 1337203 rs565499 A G 1598.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.58;SB=-1.105e+02;SOR=4.664;VQSLOD=6.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1627,120,0 3 1424718 rs2291101 G A 2010.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.099;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-1.253;SB=-7.180e+02;SOR=0.829;VQSLOD=8.37;culprit=FS GT:AD:DP:GQ:PL 0/1:65,71:136:99:2039,0,1815 3 1424850 rs2291100 T G 2394.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.586;DB;DP=215;Dels=0.00;ExcessHet=3.0103;FS=3.094;HaplotypeScore=2.7606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-0.131;SB=-1.453e+03;SOR=0.688;VQSLOD=6.91;culprit=DP GT:AD:DP:GQ:PL 0/1:118,97:215:99:2423,0,3173 3 1442951 rs3816445 T C 164.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.834;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=1.707;SB=0.00;SOR=0.399;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:9,6:15:99:193,0,288 3 1444243 rs13326014 A G 804.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.986;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.155;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=0.102;SB=-2.710e+02;SOR=1.009;VQSLOD=7.79;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,30:52:99:833,0,547 3 2671119 rs1351277 A T 716.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=-1.328;SB=-3.310e+02;SOR=0.693;VQSLOD=8.65;culprit=FS GT:AD:DP:GQ:PL 0/1:26,26:52:99:745,0,686 3 2777622 rs1554198 A G 235.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.912;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.550;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.13;ReadPosRankSum=1.423;SB=-1.250e+02;SOR=1.025;VQSLOD=6.67;culprit=QD GT:AD:DP:GQ:PL 0/1:19,10:29:99:264,0,547 3 2908694 rs6789163 A G 249.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.860;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.57;ReadPosRankSum=-0.431;SB=-2.601e+01;SOR=1.460;VQSLOD=8.27;culprit=QD GT:AD:DP:GQ:PL 0/1:28,10:38:99:278,0,754 3 2924686 rs4685575 G A 383.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.98;SB=0.00;SOR=5.136;VQSLOD=8.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:412,33,0 3 2925030 rs17646346 A G 2800.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.80;SB=-1.303e+03;SOR=1.464;VQSLOD=6.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:2829,202,0 3 3076218 rs9845519 G A 1123.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.166;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=1.911;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=-0.339;SB=-4.380e+02;SOR=0.934;VQSLOD=7.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,41:79:99:1152,0,1075 3 3076284 rs6765545 G C 1467.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.636;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-1.177;SB=-7.070e+02;SOR=0.765;VQSLOD=8.08;culprit=FS GT:AD:DP:GQ:PL 0/1:48,50:98:99:1496,0,1279 3 3076401 rs6790908 C T 1234.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.215;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=-0.639;SB=-5.130e+02;SOR=0.709;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:32,48:80:99:1263,0,834 3 3076443 rs6803232 A G 908.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.565;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.204;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=-0.105;SB=-2.140e+02;SOR=1.055;VQSLOD=7.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,32:57:99:937,0,637 3 3080509 rs7648232 C T 358.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.625;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=-0.428;SB=-1.765e+00;SOR=2.235;VQSLOD=6.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,12:21:99:387,0,262 3 3080527 rs163543 C T 969.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-2.161e+02;SOR=2.694;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:75:998,75,0 3 3081750 rs6802588 A T 1664.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.802;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=2.093;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=-0.065;SB=-9.760e+02;SOR=0.520;VQSLOD=7.61;culprit=DP GT:AD:DP:GQ:PL 0/1:80,69:149:99:1693,0,2059 3 3081825 rs339285 T C 5113.77 PASS AC=2;AF=1.00;AN=2;DB;DP=167;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.8422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.81;SB=-3.012e+03;SOR=0.693;VQSLOD=6.68;culprit=DP GT:AD:DP:GQ:PL 1/1:0,166:167:99:5142,385,0 3 3082025 rs4685596 G T 495.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.36;ReadPosRankSum=0.913;SB=-7.201e+01;SOR=0.602;VQSLOD=10.10;culprit=FS GT:AD:DP:GQ:PL 0/1:11,16:27:99:524,0,328 3 3084653 rs6800354 C T 576.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.305;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=1.719;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-1.486;SB=-6.200e+01;SOR=1.186;VQSLOD=7.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,20:44:99:605,0,749 3 3098041 rs163352 G C 448.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;SB=0.00;SOR=5.283;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:477,39,0 3 3115478 rs163897 T C 1494.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.895;DB;DP=136;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=-0.834;SB=-7.920e+02;SOR=0.738;VQSLOD=8.33;culprit=FS GT:AD:DP:GQ:PL 0/1:71,65:136:99:1523,0,1766 3 3133791 rs7647903 G A 672.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.004;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=4.980;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-0.382;SB=-1.170e+02;SOR=1.782;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 0/1:24,24:48:99:701,0,662 3 3137155 . A AT 2223.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.834;DP=98;ExcessHet=3.0103;FS=5.343;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;MQRankSum=0.417;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.56;RPA=10,11;RU=T;ReadPosRankSum=-0.355;SB=-9.130e+02;SOR=0.104;STR;VQSLOD=0.385;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:4,83:98:99:2261,157,0 3 3137313 rs12632952 T A 65.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.13;ReadPosRankSum=0.762;SB=-2.103e+01;SOR=0.616;VQSLOD=8.43;culprit=QD GT:AD:DP:GQ:PL 0/1:17,4:21:94:94,0,477 3 3139383 rs334802 C A 498.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.28;SB=0.00;SOR=5.421;VQSLOD=7.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:527,42,0 3 3139957 rs2290610 T C 1087.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.245;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=1.375;SB=-4.090e+02;SOR=0.775;VQSLOD=8.00;culprit=FS GT:AD:DP:GQ:PL 0/1:45,41:86:99:1116,0,1135 3 3143164 rs6808454 A C 1091.77 PASS AC=2;AF=1.00;AN=2;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SB=-2.420e+02;SOR=2.584;VQSLOD=5.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,34:34:84:1120,84,0 3 3143267 rs6771148 G C 2303.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-1.105e+03;SOR=1.209;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2332,169,0 3 3170792 rs334773 C T 3350.77 PASS AC=2;AF=1.00;AN=2;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.46;SB=-1.730e+03;SOR=1.220;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,110:110:99:3379,247,0 3 3170910 rs334772 A G 1367.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-3.710e+02;SOR=2.093;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1396,102,0 3 3170966 rs4684375 T C 297.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=3.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=1.249;SB=-9.732e-01;SOR=2.636;VQSLOD=5.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,11:22:99:326,0,333 3 3171460 rs334769 C T 1356.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.84;SB=-3.460e+02;SOR=2.636;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1385,105,0 3 3171502 rs334768 C A 920.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.463;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.996;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-0.919;SB=-3.520e+02;SOR=0.527;VQSLOD=9.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,37:72:99:949,0,1042 3 3171713 rs35796298 G GCCTGACT 3523.73 PASS AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.12;SB=-7.350e+02;SOR=2.649;VQSLOD=5.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:37:99:3561,105,0 3 3178322 rs186743 G A 375.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.91;SB=-1.015e+02;SOR=2.147;VQSLOD=5.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:30:404,30,0 3 3188362 rs1672772 A G 845.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.676;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=0.232;SB=-3.280e+02;SOR=0.627;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:24,29:53:99:874,0,606 3 3189279 rs1705805 A G 794.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.102;HaplotypeScore=1.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=-1.050;SB=-3.680e+02;SOR=0.910;VQSLOD=7.39;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,30:50:99:823,0,508 3 3189398 rs1669348 A G 358.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.391;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=13.829;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-1.388;SB=-5.100e+01;SOR=2.807;VQSLOD=4.91;culprit=FS GT:AD:DP:GQ:PL 0/1:12,13:25:99:387,0,351 3 3192524 rs3830315 A ATAAC 1597.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;DB;DP=60;ExcessHet=3.0103;FS=2.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.31;RPA=1,2;RU=TAAC;ReadPosRankSum=-0.313;SB=-2.470e+02;SOR=1.263;STR;VQSLOD=4.47;culprit=QD GT:AD:DP:GQ:PL 0/1:33,26:60:99:1635,0,2049 3 3195574 rs3846135 C T 670.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.486;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=5.043;HaplotypeScore=1.9968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.94;ReadPosRankSum=0.347;SB=-1.800e+02;SOR=1.380;VQSLOD=6.60;culprit=FS GT:AD:DP:GQ:PL 0/1:51,24:75:99:699,0,1420 3 3196273 rs11300080 AT A 307.73 PASS AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.64;RPA=8,7;RU=T;SB=-9.051e+01;SOR=1.981;STR;VQSLOD=5.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:13:36:345,36,0 3 3197871 rs1705789 T C 1167.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.73;SB=-4.420e+02;SOR=1.493;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:87:1196,87,0 3 3209242 rs4685612 G T 51.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.032;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.98;ReadPosRankSum=1.862;SB=0.00;SOR=0.124;VQSLOD=8.61;culprit=QD GT:AD:DP:GQ:PL 0/1:10,3:13:80:80,0,364 3 3215954 rs1669321 A G 2367.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.32;SB=-4.550e+02;SOR=3.040;VQSLOD=7.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:2396,175,0 3 3221430 rs1672753 C T 326.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.20;ReadPosRankSum=-0.789;SB=-9.901e+01;SOR=0.610;VQSLOD=9.63;culprit=FS GT:AD:DP:GQ:PL 0/1:6,13:19:99:355,0,155 3 3886580 rs4685689 A G 1932.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.17;SB=-9.600e+02;SOR=1.057;VQSLOD=6.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1961,144,0 3 3886721 rs3749350 C A 341.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.157;HaplotypeScore=1.9573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.27;ReadPosRankSum=1.041;SB=-2.320e+02;SOR=0.700;VQSLOD=5.59;culprit=QD GT:AD:DP:GQ:PL 0/1:30,17:47:99:370,0,846 3 3886847 rs3749349 G C 644.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=1.009;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=-1.334;SB=-2.960e+02;SOR=0.930;VQSLOD=7.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,27:63:99:673,0,1061 3 3886919 rs3749348 C T 749.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.26;ReadPosRankSum=0.264;SB=-4.730e+02;SOR=0.705;VQSLOD=8.78;culprit=FS GT:AD:DP:GQ:PL 0/1:48,33:81:99:778,0,1237 3 3887093 rs9844909 A G 1290.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.381;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=3.354;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=-0.444;SB=-7.270e+02;SOR=0.320;VQSLOD=10.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,47:75:99:1319,0,776 3 4023706 rs1385466 T C 100.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.958;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=6.008;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.20;ReadPosRankSum=0.354;SB=-2.657e-01;SOR=2.621;VQSLOD=5.94;culprit=QD GT:AD:DP:GQ:PL 0/1:10,4:14:99:129,0,250 3 4023868 rs1385467 A G 479.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.44;SB=-1.473e+02;SOR=1.609;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:508,39,0 3 4046763 rs62257623 T G 816.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.78;SB=0.00;SOR=6.273;VQSLOD=7.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:845,66,0 3 4344936 rs221109 T G 104.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.266;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.823;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.82;ReadPosRankSum=0.986;SB=-5.150e-01;SOR=1.751;VQSLOD=4.90;culprit=QD GT:AD:DP:GQ:PL 0/1:13,5:18:99:133,0,372 3 4345033 rs172705 G A 406.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.018;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=-0.670;SB=-2.020e+02;SOR=0.702;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 0/1:23,20:43:99:435,0,688 3 4354438 rs138017023 ATATCT A 479.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.56;ReadPosRankSum=0.061;SB=0.00;SOR=0.693;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 0/1:7,7:14:99:517,0,517 3 4354697 rs6801634 G A 1599.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;DB;DP=151;Dels=0.00;ExcessHet=3.0103;FS=2.059;HaplotypeScore=1.8997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=0.906;SB=-8.980e+02;SOR=0.816;VQSLOD=7.50;culprit=DP GT:AD:DP:GQ:PL 0/1:86,65:151:99:1628,0,2232 3 4358210 rs7647539 A G 146.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.895;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=0.233;SB=-6.700e+01;SOR=0.760;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:7,5:12:99:175,0,139 3 4403767 rs2819561 A G 1353.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.71;SB=-1.653e+02;SOR=3.967;VQSLOD=7.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1382,105,0 3 4403817 rs2633851 T A 1893.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.54;SB=-5.770e+02;SOR=2.303;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1922,147,0 3 4403818 rs35083095 T C 781.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.610;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-0.225;SB=-2.350e+02;SOR=0.773;VQSLOD=9.19;culprit=FS GT:AD:DP:GQ:PL 0/1:32,30:62:99:810,0,897 3 4403837 rs2633852 A G 2355.77 PASS AC=2;AF=1.00;AN=2;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-9.040e+02;SOR=1.739;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,74:74:99:2384,172,0 3 4404087 rs2819560 A G 1080.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.86;SB=-1.015e+02;SOR=3.981;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,31:31:84:1109,84,0 3 4452737 rs813811 G A 437.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.754;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-0.435;SB=-8.400e+01;SOR=1.236;VQSLOD=10.07;culprit=FS GT:AD:DP:GQ:PL 0/1:15,17:32:99:466,0,386 3 4459972 rs698209 A G 548.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.30;SB=-6.897e+01;SOR=3.258;VQSLOD=7.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:577,42,0 3 4461569 rs711667 G A 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.648;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=0.591;SB=-3.100e+01;SOR=0.693;VQSLOD=10.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,11:22:99:317,0,309 3 4461698 rs711666 C T 2379.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.12;SB=-1.316e+03;SOR=1.003;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2408,178,0 3 4491126 rs17040706 A G 274.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.158;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=3.136;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=1.422;SB=-9.732e-01;SOR=2.133;VQSLOD=6.07;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,9:21:99:303,0,334 3 4562667 rs1038639 T G 1011.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.813;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=5.592;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=-0.446;SB=-5.790e+02;SOR=0.293;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:52,37:89:99:1040,0,1478 3 4687470 rs373317846 G GCT 2131.75 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.451;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=0.327;POSITIVE_TRAIN_SITE;QD=27.78;RPA=7,8;RU=CT;ReadPosRankSum=1.463;SB=-4.090e+02;SOR=0.743;STR;VQSLOD=3.16;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:3,50:68:23:2169,23,0 3 4687548 rs4271897 A G 590.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.09;SB=-3.677e+01;SOR=4.174;VQSLOD=6.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:45:619,45,0 3 4687577 rs4303850 A G 358.77 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.00;SB=0.00;SOR=4.804;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:30:387,30,0 3 4693553 rs3796336 C A 847.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.17;SB=-1.513e+02;SOR=2.925;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:876,66,0 3 4693656 rs6442894 C T 3085.77 PASS AC=2;AF=1.00;AN=2;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.83;SB=-1.108e+03;SOR=1.847;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,94:94:99:3114,235,0 3 4693937 rs6442895 G C 2651.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.83;SB=-9.870e+02;SOR=1.809;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2680,199,0 3 4694010 rs6442896 A C 1372.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.20;SB=-3.200e+02;SOR=2.885;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1401,111,0 3 4694068 rs6442897 C G 505.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.75;SB=-1.603e+02;SOR=2.179;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:39:534,39,0 3 4703657 rs6801737 T A 586.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.418;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=4.688;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=1.624;SB=-2.601e+01;SOR=1.981;VQSLOD=5.55;culprit=FS GT:AD:DP:GQ:PL 0/1:18,20:38:99:615,0,497 3 4709256 . G T 343.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.460;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.09;ReadPosRankSum=-1.509;SB=-6.800e+01;SOR=0.507;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 0/1:17,14:31:99:372,0,572 3 4712413 rs2306875 G A 1226.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.702;DB;DP=110;Dels=0.00;ExcessHet=3.0103;FS=2.682;HaplotypeScore=2.8379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-0.127;SB=-3.940e+02;SOR=0.989;VQSLOD=7.82;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:64,46:110:99:1255,0,1784 3 4716811 rs2306877 A C 399.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.920;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-0.747;SB=-9.900e+01;SOR=1.042;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:15,15:30:99:428,0,428 3 4722956 rs4684438 A G 884.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.078;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-1.798;SB=-3.840e+02;SOR=0.613;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:35,33:68:99:913,0,888 3 4725239 rs2306878 G A 2027.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-9.929;DB;DP=155;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.0966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-0.331;SB=-1.069e+03;SOR=0.657;VQSLOD=8.34;culprit=DP GT:AD:DP:GQ:PL 0/1:76,79:155:99:2056,0,2017 3 4725619 rs3215005 CA C 320.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.05;RPA=2,1;RU=A;ReadPosRankSum=-0.723;SB=-7.500e+01;SOR=1.022;STR;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:7,9:17:99:358,0,270 3 4738999 rs35795762 G GGTGT 470.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.65;RPA=19,21;RU=GT;ReadPosRankSum=0.794;SB=-6.476e+01;SOR=0.188;STR;VQSLOD=8.55;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:38:99:508,0,430 3 4809969 rs17041401 T C 129.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=-0.100;SB=0.00;SOR=0.693;VQSLOD=10.22;culprit=FS GT:AD:DP:GQ:PL 0/1:5,5:10:99:158,0,172 3 4810573 rs13086334 T G 174.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=-0.437;SB=0.00;SOR=0.859;VQSLOD=9.95;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:203,0,163 3 4817057 rs6442905 T C 3279.77 PASS AC=2;AF=1.00;AN=2;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6949;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.79;SB=-1.891e+03;SOR=1.131;VQSLOD=5.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,118:118:99:3308,247,0 3 4824131 rs6442907 T C 414.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.91;SB=0.00;SOR=4.977;VQSLOD=7.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:443,33,0 3 4824493 . TGC T 1191.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;DP=47;ExcessHet=3.0103;FS=3.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=26.48;ReadPosRankSum=0.467;SB=-1.500e+02;SOR=1.562;VQSLOD=4.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,24:47:99:1229,0,1100 3 4842231 rs2291862 C T 1403.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.552;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-0.385;SB=-9.670e+02;SOR=0.625;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:43,62:105:99:1432,0,958 3 4856180 rs711631 T C 2057.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.98;SB=-1.277e+03;SOR=0.779;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2086,157,0 3 4856650 rs2304820 T C 1107.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.15;SB=-4.270e+02;SOR=1.670;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:81:1136,81,0 3 4856993 rs6442911 C G 949.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.78;SB=-1.115e+02;SOR=3.690;VQSLOD=6.85;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:72:978,72,0 3 4859725 rs9844268 G A 1650.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.01;SB=-6.730e+02;SOR=1.609;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1679,126,0 3 4927281 rs4685841 T C 296.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.867;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=0.222;SB=-3.500e+01;SOR=0.941;VQSLOD=10.31;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:325,0,189 3 4927308 rs6794077 A G 749.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.78;SB=-3.190e+02;SOR=1.863;VQSLOD=5.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:60:778,60,0 3 4940288 rs11363851 AG A 749.73 PASS AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.17;RPA=2,1;RU=G;SB=-1.345e+02;SOR=2.833;STR;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:54:787,54,0 3 4942300 rs3762783 T C 817.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.923;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=2.150;HaplotypeScore=2.9155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=-1.246;SB=-5.350e+02;SOR=0.411;VQSLOD=9.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,33:63:99:846,0,748 3 4942430 rs3762784 G A 195.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=-0.156;SB=0.00;SOR=1.022;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:5,7:12:99:224,0,169 3 5024415 . A AT 1056.19 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.217;DP=51;ExcessHet=3.0103;FS=8.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.71;RPA=11,12;RU=T;ReadPosRankSum=2.808;SB=-9.900e+01;SOR=3.273;STR;VQSLOD=4.62;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:6,45:51:4:1092,0,4 3 5025514 rs72131734 G GGTGT 579.73 PASS AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.45;RPA=13,15;RU=GT;SB=-7.019e+01;SOR=2.833;STR;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:26:39:617,39,0 3 5241223 rs377120 C T 1700.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=-8.520e+02;SOR=1.047;VQSLOD=7.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1729,129,0 3 5241309 rs410509 C A 1412.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SB=-4.390e+02;SOR=2.200;VQSLOD=7.05;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1441,105,0 3 6814988 rs6781770 C T 447.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.113;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=0.420;SB=-3.050e+02;SOR=0.793;VQSLOD=10.25;culprit=FS GT:AD:DP:GQ:PL 0/1:14,19:34:99:476,0,352 3 6828348 rs11924839 A C 822.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.648;DB;DP=74;Dels=0.00;ExcessHet=3.0103;FS=2.052;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-1.157;SB=-3.170e+02;SOR=1.130;VQSLOD=7.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,32:74:99:851,0,1098 3 6828364 rs1533434 A G 1958.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-8.050e+02;SOR=1.473;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:1987,147,0 3 6903297 rs3749380 C T 3719.77 PASS AC=2;AF=1.00;AN=2;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;SB=-1.697e+03;SOR=1.460;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,122:122:99:3748,277,0 3 6903601 rs342034 A G 4401.77 PASS AC=2;AF=1.00;AN=2;DB;DP=138;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-1.751e+03;SOR=1.644;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,138:138:99:4430,322,0 3 7444980 rs60254500 G A 417.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.546;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=4.914;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.052;SB=-1.010e+02;SOR=0.141;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:18,16:34:99:446,0,599 3 7456675 rs712774 C T 605.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.14;SB=-4.176e+01;SOR=4.294;VQSLOD=7.48;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:48:634,48,0 3 7494245 . T TTGTG 785.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DP=49;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=14.03;RPA=14,16;RU=TG;ReadPosRankSum=-0.531;SB=-1.610e+02;SOR=0.936;STR;VQSLOD=6.13;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,19:49:99:823,0,1207 3 7620789 rs1485175 T C 1093.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=2.785;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=0.271;SB=-5.230e+02;SOR=1.075;VQSLOD=7.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,42:91:99:1122,0,1341 3 7678010 rs7611935 G A 3035.77 PASS AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.37;SB=-1.763e+03;SOR=0.872;VQSLOD=5.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,107:107:99:3064,223,0 3 7678090 rs7612048 G A 2447.77 PASS AC=2;AF=1.00;AN=2;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.98;SB=-1.063e+03;SOR=1.358;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2476,187,0 3 7678134 rs17047754 C T 844.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.644;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=-0.073;SB=-3.080e+02;SOR=0.704;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:23,34:57:99:873,0,566 3 8299641 rs4990797 G C 271.18 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=2.688;HaplotypeScore=2.9372;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=1.098;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=0.939;SB=-1.283e+02;SOR=0.184;VQSLOD=0.210;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:3,12:15:10:299,10,0 3 8543713 . G GT 2604.73 PASS AC=2;AF=1.00;AN=2;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=61.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.30;RPA=2,3;RU=T;SB=-1.062e+03;SOR=1.195;STR;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:74:99:2642,214,0 3 8543757 rs2324625 A C 760.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.534;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=1.101;SB=-4.560e+02;SOR=0.368;VQSLOD=10.22;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,32:52:99:789,0,514 3 8556617 rs12715649 A G 1260.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.974;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=2.541;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=0.137;SB=-8.480e+02;SOR=0.485;VQSLOD=9.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,52:102:99:1289,0,1349 3 8556671 rs60137047 T G 1520.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.115;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=2.423;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=1.790;SB=-8.820e+02;SOR=1.000;VQSLOD=7.04;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:53,62:115:99:1549,0,1505 3 8556784 rs12715650 A C 731.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.334;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=2.469;HaplotypeScore=1.9974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=0.650;SB=-3.830e+02;SOR=0.418;VQSLOD=10.05;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,31:53:99:760,0,610 3 8578748 rs17049237 C T 725.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.354;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.104;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-1.695;SB=-3.020e+02;SOR=0.532;VQSLOD=8.81;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,30:57:99:754,0,796 3 8579290 rs6784343 G A 642.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.526;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.46;ReadPosRankSum=-0.592;SB=-3.440e+02;SOR=0.613;VQSLOD=8.69;culprit=QD GT:AD:DP:GQ:PL 0/1:48,28:76:99:671,0,1237 3 8590313 rs3088339 T C 1477.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.778;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=-0.858;SB=-7.700e+02;SOR=0.808;VQSLOD=7.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,53:93:99:1506,0,1017 3 8591350 rs66738975 T G 63.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.38;ReadPosRankSum=0.561;SB=0.00;SOR=0.223;VQSLOD=8.85;culprit=QD GT:AD:DP:GQ:PL 0/1:7,3:10:92:92,0,232 3 8591469 rs73020399 G A 489.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.585;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=1.298;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=0.342;SB=-1.590e+02;SOR=1.179;VQSLOD=7.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,21:45:99:518,0,590 3 8591476 rs66485711 C G 573.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.694;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.271;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=1.007;SB=-1.640e+02;SOR=1.030;VQSLOD=7.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,21:47:99:602,0,647 3 8608920 rs171408 G A 514.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.428;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=-0.247;SB=0.00;SOR=1.101;VQSLOD=9.65;culprit=FS GT:AD:DP:GQ:PL 0/1:11,16:27:99:543,0,318 3 8667670 rs355056 G C 747.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.03;SB=-2.940e+02;SOR=1.127;VQSLOD=5.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:776,60,0 3 8667735 rs355057 C A 1128.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.39;SB=-1.781e+02;SOR=3.126;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:90:1157,90,0 3 8667896 rs355058 T C 4739.77 PASS AC=2;AF=1.00;AN=2;DB;DP=152;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-2.951e+03;SOR=0.832;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,152:152:99:4768,340,0 3 8669367 rs5846608 TG T 3575.73 PASS AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.43;RPA=4,3;RU=G;SB=-1.471e+03;SOR=1.105;STR;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,90:94:99:3613,271,0 3 8669615 rs355055 G C 369.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.81;SB=0.00;SOR=4.804;VQSLOD=7.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:11:30:390,30,0 3 8675318 rs2276801 C T 321.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.174;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.854;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.93;ReadPosRankSum=-0.928;SB=-1.765e+00;SOR=2.387;VQSLOD=5.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,10:17:99:350,0,190 3 8675778 rs11131140 T C 324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.970;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.810;HaplotypeScore=4.3493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=0.299;SB=-1.360e+02;SOR=0.211;VQSLOD=9.79;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,12:26:99:353,0,381 3 8675957 rs73125149 G A 270.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=0.910;SB=-6.100e+01;SOR=1.201;VQSLOD=9.16;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:299,0,258 3 8676204 rs3774210 A G 3424.77 PASS AC=2;AF=1.00;AN=2;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.71;SB=-2.001e+03;SOR=0.892;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,108:108:99:3453,250,0 3 8676945 rs3816911 T C 3091.77 PASS AC=2;AF=1.00;AN=2;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-1.439e+03;SOR=1.565;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,104:104:99:3120,223,0 3 8701374 rs80210627 T C 2101.77 PASS AC=2;AF=1.00;AN=2;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.37;SB=-8.600e+02;SOR=1.609;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,67:67:99:2130,154,0 3 8701430 rs371133 T C 2640.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.07;SB=-1.403e+03;SOR=1.101;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2669,193,0 3 8705555 rs34054872 T C 673.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.454;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=0.853;SB=-1.660e+02;SOR=1.008;VQSLOD=8.64;culprit=FS GT:AD:DP:GQ:PL 0/1:32,23:55:99:702,0,903 3 8730260 rs6770204 G A 259.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=1.623;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=2.642;SB=-2.090e+02;SOR=0.283;VQSLOD=8.44;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:13,13:26:99:288,0,328 3 8730289 rs164450 C G 137.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.890;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.506;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.89;ReadPosRankSum=-0.495;SB=-2.004e+01;SOR=1.863;VQSLOD=5.28;culprit=QD GT:AD:DP:GQ:PL 0/1:14,6:20:99:166,0,340 3 8757311 rs17049469 G C 411.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.070;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=1.585;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=-0.764;SB=-2.520e+02;SOR=0.368;VQSLOD=9.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,18:29:99:440,0,287 3 8775457 CAV3 G A 315.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.001;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=-0.045;SB=0.00;SOR=0.336;VQSLOD=9.69;culprit=FS GT:AD:DP:GQ:PL 0/1:18,11:29:99:344,0,627 3 8775661 CAV3 C T 1912.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;DB;DP=190;Dels=0.00;ExcessHet=3.0103;FS=5.187;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.07;ReadPosRankSum=-1.144;SB=-1.308e+03;SOR=0.422;VQSLOD=5.41;culprit=DP GT:AD:DP:GQ:PL 0/1:105,85:190:99:1941,0,2546 3 8784046 . C CAAA 352.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=0.000;QD=23.52;RPA=14,17;RU=A;ReadPosRankSum=2.010;SB=-7.894e+00;SOR=2.303;STR;VQSLOD=5.98;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:7,8:16:63:296,0,63 3 8794545 rs1042778 G T 199.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=1.097;SB=0.00;SOR=1.270;VQSLOD=9.67;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:228,0,118 3 8809184 rs237902 G A 2923.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-11.970;DB;DP=249;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.2767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=0.254;SB=-1.576e+03;SOR=0.768;VQSLOD=5.10;culprit=DP GT:AD:DP:GQ:PL 0/1:135,113:249:99:2952,0,3848 3 8809703 rs2228485 G A 756.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.454;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=10.078;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-0.107;SB=-2.440e+02;SOR=0.111;VQSLOD=5.61;culprit=FS GT:AD:DP:GQ:PL 0/1:37,30:67:99:785,0,1225 3 8931984 rs656626 A C 1380.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.11;SB=-3.660e+02;SOR=2.584;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:99:1409,102,0 3 8932189 rs607531 C T 410.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.750;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=0.567;SB=-1.320e+02;SOR=0.584;VQSLOD=8.90;culprit=FS GT:AD:DP:GQ:PL 0/1:27,17:44:99:439,0,719 3 8940765 rs2035220 T C 689.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.970;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=-0.736;SB=-1.870e+02;SOR=0.693;VQSLOD=9.13;culprit=FS GT:AD:DP:GQ:PL 0/1:27,27:54:99:718,0,699 3 8955240 rs430781 T C 649.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.68;SB=-7.897e+01;SOR=3.500;VQSLOD=6.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:678,51,0 3 8955389 rs373572 C T 390.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.731;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.467;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.851;SB=-2.100e+02;SOR=0.231;VQSLOD=10.29;culprit=SOR GT:AD:DP:GQ:PL 0/1:17,15:32:99:419,0,434 3 9005078 rs615967 C T 1517.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.62;SB=-9.210e+02;SOR=0.693;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1546,114,0 3 9034558 rs511815 C T 893.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=2.157;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=0.567;SB=-3.400e+02;SOR=0.408;VQSLOD=10.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,32:73:99:922,0,1078 3 9036010 rs637172 T G 1185.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.312;DB;DP=105;Dels=0.00;ExcessHet=3.0103;FS=0.744;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=0.093;SB=-7.860e+02;SOR=0.547;VQSLOD=9.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:57,48:105:99:1214,0,1494 3 9055293 rs35295033 G T 645.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.483;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=4.643;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=1.241;SB=-2.470e+02;SOR=1.128;VQSLOD=5.71;culprit=FS GT:AD:DP:GQ:PL 0/1:18,21:39:99:674,0,571 3 9066853 rs421041 T C 1847.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.33;SB=-9.140e+02;SOR=1.179;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1876,138,0 3 9069747 rs416685 A G 1199.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.90;SB=-7.190e+02;SOR=0.941;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:93:1228,93,0 3 9069873 rs10510396 A G 464.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.198;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=1.348;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=1.106;SB=-2.070e+02;SOR=1.038;VQSLOD=7.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,18:35:99:493,0,504 3 9089254 rs2244864 C G 2057.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.26;SB=-1.030e+03;SOR=1.352;VQSLOD=7.16;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2086,147,0 3 9089384 rs1622607 C A 168.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=0.528;SB=0.00;SOR=0.859;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:197,0,170 3 9090905 rs611406 C T 153.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.435;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=-1.194;SB=0.00;SOR=0.340;VQSLOD=9.77;culprit=FS GT:AD:DP:GQ:PL 0/1:10,6:16:99:182,0,357 3 9091151 rs610457 C G 1110.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.320;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.500;SB=-5.720e+02;SOR=0.767;VQSLOD=8.71;culprit=FS GT:AD:DP:GQ:PL 0/1:45,47:92:99:1139,0,1110 3 9094531 rs13091604 T C 354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.094;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=1.424;SB=-1.300e+02;SOR=0.681;VQSLOD=8.35;culprit=FS GT:AD:DP:GQ:PL 0/1:22,15:37:99:383,0,543 3 9100109 rs200726078 G C 2809.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.486;DB;DP=219;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.83;ReadPosRankSum=-0.731;SB=-1.244e+03;SOR=0.719;VQSLOD=4.85;culprit=DP GT:AD:DP:GQ:PL 0/1:107,112:219:99:2838,0,2881 3 9102112 . C CTTTT 452.14 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.61;RPA=16,20;RU=T;ReadPosRankSum=1.750;SB=0.00;SOR=4.047;STR;VQSLOD=3.10;culprit=FS GT:AD:DP:GQ:PL 0/1:1,14:33:10:489,0,10 3 9102137 rs6775479 G C 723.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.89;SB=0.00;SOR=5.994;VQSLOD=7.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:57:752,57,0 3 9122948 rs2664089 A G 1895.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.09;SB=-1.063e+03;SOR=1.010;VQSLOD=7.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:1924,138,0 3 9166281 rs735253 G C 729.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.17;SB=-3.530e+02;SOR=1.085;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:57:758,57,0 3 9390345 rs2728938 T C 704.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-2.501e+02;SOR=1.931;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:54:733,54,0 3 9406836 rs1054975 T C 1897.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-9.780e+02;SOR=1.044;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:1926,141,0 3 9407022 rs2648536 T C 2243.77 PASS AC=2;AF=1.00;AN=2;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.60;SB=-1.364e+03;SOR=0.779;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,71:71:99:2272,163,0 3 9422210 rs2596916 T C 1563.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.28;SB=-9.040e+02;SOR=0.952;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1592,114,0 3 9425911 rs1129170 G A 1660.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.56;SB=-5.590e+02;SOR=2.004;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1689,126,0 3 9489767 rs2258735 T C 929.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.21;SB=-1.921e+02;SOR=2.833;VQSLOD=6.88;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:69:958,69,0 3 9495385 rs2648580 A G 1697.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=-4.640e+02;SOR=2.259;VQSLOD=5.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1726,129,0 3 9547950 rs2625890 G C 584.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.126;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=3.761;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=-1.412;SB=-3.670e+02;SOR=0.330;VQSLOD=9.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,25:59:99:613,0,911 3 9547959 rs2625889 C T 538.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.298;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=3.997;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=-0.566;SB=-3.290e+02;SOR=0.293;VQSLOD=9.86;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,23:56:99:567,0,809 3 9727002 rs787836 G C 1545.77 PASS AC=2;AF=1.00;AN=2;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-7.570e+02;SOR=1.358;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:52:99:1574,111,0 3 9730284 rs41278545 A G 487.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.007;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=-0.298;SB=-1.610e+02;SOR=0.829;VQSLOD=9.75;culprit=FS GT:AD:DP:GQ:PL 0/1:30,19:49:99:516,0,866 3 9730868 rs159142 G C 454.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.03;SB=0.00;SOR=5.136;VQSLOD=8.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:483,36,0 3 9743398 rs144534173 TGGAG T 4261.73 PASS AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.21;RPA=3,2;RU=GGAG;SB=-2.000e+03;SOR=0.854;STR;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:69:99:4299,196,0 3 9754334 rs187310 C T 2720.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.066;DB;DP=207;Dels=0.00;ExcessHet=3.0103;FS=1.694;HaplotypeScore=4.5171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=1.239;SB=-1.714e+03;SOR=0.603;VQSLOD=6.73;culprit=DP GT:AD:DP:GQ:PL 0/1:100,107:207:99:2749,0,2392 3 9757086 rs697820 C G 1189.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.740;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=5.803;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=0.511;SB=-6.090e+02;SOR=0.823;VQSLOD=5.42;culprit=FS GT:AD:DP:GQ:PL 0/1:38,42:80:99:1218,0,1026 3 9757582 rs144562396 CCCTATGGGCCTCACT C 1147.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.092;DB;DP=21;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.75;ReadPosRankSum=2.131;SB=-5.150e+02;SOR=0.269;VQSLOD=7.94;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:11,7:21:99:1185,0,1914 3 9757598 . T A 157.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;DP=21;Dels=0.00;ExcessHet=3.0103;FS=2.128;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.51;ReadPosRankSum=2.950;SB=-9.100e+01;SOR=0.160;VQSLOD=5.95;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:14,7:21:99:186,0,415 3 9757754 rs708571 G A 851.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.659;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=3.200;HaplotypeScore=3.9457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-0.055;SB=-5.220e+02;SOR=0.560;VQSLOD=7.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,34:73:99:880,0,929 3 9783147 rs696513 A G 652.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.184;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=1.233;SB=-3.500e+01;SOR=0.798;VQSLOD=9.96;culprit=FS GT:AD:DP:GQ:PL 0/1:19,21:40:99:681,0,576 3 9786657 rs199695321 C T 1178.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.576;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.40;ReadPosRankSum=-0.079;SB=-5.760e+02;SOR=0.693;VQSLOD=7.71;culprit=FS GT:AD:DP:GQ:PL 0/1:44,44:88:99:1207,0,1200 3 9803126 rs17252807 A G 436.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.12;SB=-2.011e+02;SOR=1.473;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:465,36,0 3 9822275 rs3868897 C T 515.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.24;SB=-4.176e+01;SOR=4.174;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:544,42,0 3 9829171 rs2290309 G A 1827.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.64;SB=-9.520e+02;SOR=1.009;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:57:99:1856,138,0 3 9829226 rs293786 A C 2069.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-1.240e+03;SOR=0.756;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2098,153,0 3 9841989 rs6443266 A G 600.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.599;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=1.001;HaplotypeScore=2.7145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.39;ReadPosRankSum=0.191;SB=-2.110e+02;SOR=0.830;VQSLOD=7.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:38,26:64:99:629,0,930 3 9857514 rs7652460 A G 225.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.52;ReadPosRankSum=-0.863;SB=-4.176e+01;SOR=0.693;VQSLOD=9.85;culprit=FS GT:AD:DP:GQ:PL 0/1:3,8:11:87:254,0,87 3 9859456 rs3806672 C G 1457.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;DB;DP=137;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=-0.164;SB=-8.960e+02;SOR=0.674;VQSLOD=8.31;culprit=FS GT:AD:DP:GQ:PL 0/1:73,64:137:99:1486,0,1809 3 9867625 rs3732527 C T 1745.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-0.344;SB=-7.220e+02;SOR=0.756;VQSLOD=9.03;culprit=FS GT:AD:DP:GQ:PL 0/1:70,70:140:99:1774,0,1752 3 9868577 rs12490900 A G 227.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.937;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=-1.623;SB=0.00;SOR=0.610;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:11,10:21:99:256,0,376 3 9870857 rs2290303 G A 3012.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-10.527;DB;DP=219;Dels=0.00;ExcessHet=3.0103;FS=1.041;HaplotypeScore=3.8622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=-0.737;SB=-1.557e+03;SOR=0.789;VQSLOD=6.35;culprit=DP GT:AD:DP:GQ:PL 0/1:110,109:219:99:3041,0,2998 3 9871030 rs2290305 T G 945.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.242;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=4.875;HaplotypeScore=4.5982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=1.122;SB=-2.180e+02;SOR=1.317;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 0/1:51,34:85:99:974,0,1388 3 9874670 rs7622954 G A 361.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.150;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=3.873;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-0.417;SB=-1.620e+02;SOR=0.223;VQSLOD=9.83;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,16:29:99:390,0,381 3 9874914 rs115917139 C T 622.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=2.569;HaplotypeScore=1.3302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-1.366;SB=-1.400e+02;SOR=1.214;VQSLOD=6.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,24:60:99:651,0,903 3 9876301 rs13088594 G T 537.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.314;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=8.010;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=-1.322;SB=-2.000e+02;SOR=1.288;VQSLOD=6.01;culprit=FS GT:AD:DP:GQ:PL 0/1:33,20:53:99:566,0,1114 3 9895270 rs34082649 C A 151.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.895;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=0.079;SB=-6.800e+01;SOR=1.179;VQSLOD=9.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:5,7:12:99:180,0,141 3 9896351 rs279563 A G 4466.77 PASS AC=2;AF=1.00;AN=2;DB;DP=142;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.46;SB=-1.725e+03;SOR=1.874;VQSLOD=4.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,142:142:99:4495,322,0 3 9918861 rs456168 C A 228.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.332;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=1.574;SB=-9.901e+01;SOR=0.368;VQSLOD=8.91;culprit=FS GT:AD:DP:GQ:PL 0/1:6,10:16:99:257,0,167 3 9932337 rs279558 G C 242.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.12;ReadPosRankSum=0.209;SB=-2.601e+01;SOR=1.071;VQSLOD=8.39;culprit=FS GT:AD:DP:GQ:PL 0/1:15,9:24:99:271,0,404 3 9934428 rs2279795 T C 157.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.728;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=-1.675;SB=-4.276e+01;SOR=0.180;VQSLOD=9.20;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:186,0,282 3 9934605 rs279553 T C 1333.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.207;DB;DP=119;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=0.155;SB=-5.910e+02;SOR=0.698;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:65,54:119:99:1362,0,1765 3 9945132 . C T 529.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.63;ReadPosRankSum=0.614;SB=-1.540e+02;SOR=0.765;VQSLOD=7.63;culprit=FS GT:AD:DP:GQ:PL 0/1:32,23:55:99:558,0,821 3 9962816 rs376511 A G 833.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.88;SB=-2.440e+02;SOR=2.066;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:63:862,63,0 3 9965713 rs115949142 T A 860.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.456;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=5.584;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=-1.017;SB=-4.020e+02;SOR=1.147;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 0/1:51,36:87:99:889,0,1299 3 9969815 . G A 192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.71;ReadPosRankSum=-0.635;SB=-1.765e+00;SOR=1.136;VQSLOD=7.86;culprit=FS GT:AD:DP:GQ:PL 0/1:11,7:18:99:221,0,335 3 9969932 rs57179462 TGG T 2840.73 PASS AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.06;RPA=4,2;RU=G;SB=-1.148e+03;SOR=1.159;STR;VQSLOD=4.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:2878,166,0 3 9970031 rs279549 A G 2429.77 PASS AC=2;AF=1.00;AN=2;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.6986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.15;SB=-1.448e+03;SOR=0.744;VQSLOD=4.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,78:78:99:2458,184,0 3 9970442 rs279547 C T 585.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.689;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=1.475;HaplotypeScore=1.8665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.31;ReadPosRankSum=-0.722;SB=-2.440e+02;SOR=0.382;VQSLOD=9.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:14,18:32:99:614,0,410 3 9972493 rs279545 G A 3092.77 PASS AC=2;AF=1.00;AN=2;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4896;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;SB=-1.382e+03;SOR=1.473;VQSLOD=7.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,100:100:99:3121,232,0 3 9975247 rs183956 C G 848.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;SB=-1.971e+02;SOR=2.753;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:66:877,66,0 3 9976159 rs279552 A G 938.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;SB=-2.021e+02;SOR=2.584;VQSLOD=6.97;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:72:967,72,0 3 9979423 rs2302785 G T 232.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.816;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=4.415;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=0.420;SB=-1.160e+02;SOR=0.493;VQSLOD=5.61;culprit=FS GT:AD:DP:GQ:PL 0/1:11,9:20:99:261,0,292 3 9991388 rs279601 G C 5739.77 PASS AC=2;AF=1.00;AN=2;DB;DP=195;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.43;SB=-3.868e+03;SOR=0.745;VQSLOD=5.43;culprit=DP GT:AD:DP:GQ:PL 1/1:0,195:195:99:5768,412,0 3 10076008 . CA C 76.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=1.631;QD=4.26;RPA=21,20;RU=A;ReadPosRankSum=1.043;SB=0.00;SOR=0.693;STR;VQSLOD=1.54;culprit=QD GT:AD:DP:GQ:PL 0/1:9,9:19:99:114,0,109 3 10085035 rs803335 G T 1345.77 PASS AC=2;AF=1.00;AN=2;DB;DP=42;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.04;SB=-5.260e+02;SOR=1.556;VQSLOD=7.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,42:42:99:1374,102,0 3 10088308 rs72492998 T C 209.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.7821;MLEAC=1;MLEAF=0.500;MQ=55.37;MQ0=0;MQRankSum=-3.218;QD=2.69;ReadPosRankSum=0.730;SB=-1.590e+02;SOR=0.867;VQSLOD=0.281;culprit=QD GT:AD:DP:GQ:PL 0/1:62,16:78:99:238,0,1726 3 10088343 rs73126218 A G 219.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.299;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=54.00;MQ0=0;MQRankSum=-2.357;POSITIVE_TRAIN_SITE;QD=2.82;ReadPosRankSum=0.687;SB=-1.540e+02;SOR=0.839;VQSLOD=2.02;culprit=QD GT:AD:DP:GQ:PL 0/1:62,16:79:99:248,0,1635 3 10088422 rs144167368 C T 85.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.77;MQ0=0;MQRankSum=-2.106;QD=2.52;ReadPosRankSum=-1.447;SB=-2.402e+01;SOR=0.307;VQSLOD=1.46;culprit=QD GT:AD:DP:GQ:PL 0/1:28,6:34:99:114,0,875 3 10088443 rs145517746 C A 59.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.471;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.47;MQ0=0;MQRankSum=-1.064;QD=2.21;ReadPosRankSum=-2.032;SB=-9.732e-01;SOR=0.551;VQSLOD=1.57;culprit=QD GT:AD:DP:GQ:PL 0/1:22,5:27:88:88,0,734 3 10088444 rs142624538 A G 57.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.47;MQ0=0;MQRankSum=-1.064;QD=2.14;ReadPosRankSum=-2.062;SB=-9.732e-01;SOR=0.551;VQSLOD=1.58;culprit=QD GT:AD:DP:GQ:PL 0/1:22,5:27:86:86,0,724 3 10089906 rs372506747 C A 182.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.600;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.60;MQ0=0;MQRankSum=-4.097;QD=5.71;ReadPosRankSum=0.131;SB=0.00;SOR=0.122;VQSLOD=1.29;culprit=QD GT:AD:DP:GQ:PL 0/1:24,8:32:99:211,0,902 3 10089925 rs375792717 G A 84.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.951;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8323;MLEAC=1;MLEAF=0.500;MQ=56.63;MQ0=0;MQRankSum=-4.596;QD=3.69;ReadPosRankSum=-0.149;SB=0.00;SOR=0.095;VQSLOD=0.759;culprit=QD GT:AD:DP:GQ:PL 0/1:18,5:23:99:113,0,657 3 10106608 . T C 285.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.207;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.69;MQ0=0;MQRankSum=-5.537;QD=6.97;ReadPosRankSum=0.234;SB=-1.709e+01;SOR=0.502;VQSLOD=0.222;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,14:41:99:314,0,900 3 10142949 rs3172417 C T 396.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6390;MLEAC=1;MLEAF=0.500;MQ=60.16;MQ0=0;MQRankSum=-0.567;POSITIVE_TRAIN_SITE;QD=5.83;ReadPosRankSum=-0.570;SB=-2.110e+02;SOR=0.693;VQSLOD=3.07;culprit=QD GT:AD:DP:GQ:PL 0/1:50,18:68:99:425,0,1279 3 10186180 . C CT 100.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.75;RPA=18,19;RU=T;ReadPosRankSum=0.001;SB=-5.504e+00;SOR=1.270;STR;VQSLOD=7.42;culprit=QD GT:AD:DP:GQ:PL 0/1:5,8:13:52:138,0,52 3 10186263 . C A 383.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=0.260;SB=-2.300e+02;SOR=0.657;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:24,15:39:99:412,0,572 3 10186447 rs1678593 A T 355.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-7.597e+01;SOR=2.494;VQSLOD=7.01;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:384,30,0 3 10188428 rs1678607 T G 581.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.29;SB=-4.176e+01;SOR=4.174;VQSLOD=6.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:45:610,45,0 3 10189929 rs1681660 T C 933.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.13;SB=-3.130e+02;SOR=2.019;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:69:962,69,0 3 10251196 rs459864 A G 790.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.275;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=2.371;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=-1.567;SB=-4.020e+02;SOR=0.768;VQSLOD=6.18;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,27:52:99:819,0,640 3 10258493 rs2302862 T C 493.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.423;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=0.962;SB=-5.400e+01;SOR=1.112;VQSLOD=10.17;culprit=FS GT:AD:DP:GQ:PL 0/1:16,16:32:99:522,0,422 3 10258514 rs2302861 T C 576.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.306;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=-0.031;SB=-5.300e+01;SOR=0.892;VQSLOD=9.76;culprit=FS GT:AD:DP:GQ:PL 0/1:17,20:37:99:605,0,466 3 10258762 rs2302860 G C 1287.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=4.400;HaplotypeScore=1.8188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=-0.758;SB=-7.290e+02;SOR=0.323;VQSLOD=9.43;culprit=FS GT:AD:DP:GQ:PL 0/1:37,52:89:99:1316,0,997 3 10261294 rs3895947 A G 324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=2.846;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=1.248;SB=-1.643e+02;SOR=0.148;VQSLOD=8.60;culprit=SOR GT:AD:DP:GQ:PL 0/1:4,13:17:99:353,0,109 3 10264299 rs813591 C T 818.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.939;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=4.523;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=-0.597;SB=-1.940e+02;SOR=1.485;VQSLOD=6.90;culprit=FS GT:AD:DP:GQ:PL 0/1:23,28:51:99:847,0,549 3 10264480 rs3844283 C G 689.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.328;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.26;ReadPosRankSum=0.798;SB=-3.680e+02;SOR=0.631;VQSLOD=8.21;culprit=QD GT:AD:DP:GQ:PL 0/1:64,31:95:99:718,0,1760 3 10268017 rs779905 C T 1274.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.930;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-0.687;SB=-4.300e+02;SOR=0.606;VQSLOD=9.90;culprit=FS GT:AD:DP:GQ:PL 0/1:40,48:88:99:1303,0,1141 3 10276163 rs708035 T A 3106.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9464;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.16;SB=-1.400e+03;SOR=1.477;VQSLOD=7.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:3135,229,0 3 10280753 rs11465932 G A 476.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.563;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.847;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=0.070;SB=-9.732e-01;SOR=1.609;VQSLOD=5.74;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,17:45:99:505,0,963 3 10283716 rs796552 A G 803.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.99;SB=-7.897e+01;SOR=3.912;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:63:832,63,0 3 10302045 rs2241313 C T 1075.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.4962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=1.653;SB=-7.460e+02;SOR=0.627;VQSLOD=8.56;culprit=FS GT:AD:DP:GQ:PL 0/1:56,48:104:99:1104,0,1482 3 10302056 rs2241314 A G 1020.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;DB;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.9968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=1.635;SB=-7.210e+02;SOR=0.699;VQSLOD=8.87;culprit=FS GT:AD:DP:GQ:PL 0/1:55,47:102:99:1049,0,1443 3 10302172 rs394558 G A 1869.77 PASS AC=2;AF=1.00;AN=2;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.69;SB=-7.990e+02;SOR=1.421;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,59:59:99:1898,144,0 3 10302369 rs451952 T C 1140.77 PASS AC=2;AF=1.00;AN=2;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.59;SB=-4.040e+02;SOR=1.675;VQSLOD=6.72;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:35:84:1169,84,0 3 10302395 rs439483 G C 974.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.49;SB=-2.880e+02;SOR=2.303;VQSLOD=5.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:72:1003,72,0 3 10311939 rs2075352 C T 938.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.485;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=5.003;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=1.551;SB=-1.710e+02;SOR=1.445;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 0/1:56,33:89:99:967,0,1565 3 10312507 rs2075353 A G 1288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.378;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=2.688;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-0.222;SB=-5.130e+02;SOR=1.021;VQSLOD=7.49;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,44:99:99:1317,0,1513 3 10318230 . A AT 950.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;DP=45;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.13;RPA=1,2;RU=T;ReadPosRankSum=0.023;SB=-2.070e+02;SOR=0.473;STR;VQSLOD=7.03;culprit=QD GT:AD:DP:GQ:PL 0/1:20,25:45:99:988,0,754 3 10320865 rs2075355 A G 326.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.733;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=4.771;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=-0.675;SB=-1.767e+00;SOR=3.014;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 0/1:5,10:15:99:355,0,118 3 10328250 rs35683 A C 2677.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.78;SB=-8.230e+02;SOR=2.155;VQSLOD=7.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2706,196,0 3 10331457 rs696217 G T 251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.118;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=-0.899;SB=-1.360e+02;SOR=0.859;VQSLOD=10.25;culprit=FS GT:AD:DP:GQ:PL 0/1:9,10:20:99:280,0,212 3 10342876 rs696221 C T 1249.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.24;SB=-4.250e+02;SOR=1.981;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:96:1278,96,0 3 10345527 rs697232 G A 1122.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;DB;DP=108;Dels=0.00;ExcessHet=3.0103;FS=0.798;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=-0.074;SB=-4.090e+02;SOR=0.941;VQSLOD=7.15;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:61,47:108:99:1151,0,1715 3 10346996 . T TA 97.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQ0=0;MQRankSum=0.736;POSITIVE_TRAIN_SITE;QD=7.52;RPA=8,9;RU=A;ReadPosRankSum=-0.979;SB=-2.004e+01;SOR=1.179;STR;VQSLOD=3.28;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,6:14:99:135,0,149 3 10347546 rs3835090 CAACAGT C 1845.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.773;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQ0=0;MQRankSum=1.262;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=-0.722;SB=-5.120e+02;SOR=0.806;VQSLOD=3.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:33,22:56:99:1883,0,3027 3 10359462 rs28349 A G 594.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.32;SB=-2.830e+02;SOR=1.230;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:45:623,45,0 3 10359628 rs1642977 T A 445.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.176;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=0.559;SB=-1.480e+02;SOR=1.445;VQSLOD=6.96;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,16:33:99:474,0,446 3 10370486 rs4327369 G C 2970.77 PASS AC=2;AF=1.00;AN=2;DB;DP=90;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.38;SB=-8.070e+02;SOR=2.494;VQSLOD=5.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:90:99:2999,220,0 3 10379923 rs35678 C T 2614.77 PASS AC=2;AF=1.00;AN=2;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.71;SB=-1.712e+03;SOR=0.739;VQSLOD=6.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,88:88:99:2643,193,0 3 10382111 rs171337 T C 2700.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.77;SB=-1.617e+03;SOR=0.765;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2729,199,0 3 10382148 rs154242 G A 3080.77 PASS AC=2;AF=1.00;AN=2;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.85;SB=-1.756e+03;SOR=0.715;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,91:91:99:3109,232,0 3 10384425 rs2075354 G A 863.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;DB;DP=84;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=-0.442;SB=-3.570e+02;SOR=0.593;VQSLOD=9.12;culprit=FS GT:AD:DP:GQ:PL 0/1:47,37:84:99:892,0,1306 3 10387059 rs241509 C A 3853.77 PASS AC=2;AF=1.00;AN=2;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.94;SB=-1.166e+03;SOR=2.282;VQSLOD=6.32;culprit=FS GT:AD:DP:GQ:PL 1/1:0,117:117:99:3882,292,0 3 10396988 rs3774180 T C 581.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.33;SB=0.00;SOR=5.549;VQSLOD=7.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:610,45,0 3 10400231 rs3774178 T C 576.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.52;SB=0.00;SOR=5.549;VQSLOD=7.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:605,45,0 3 10400643 rs28113 G A 1225.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.05;SB=-2.800e+02;SOR=2.712;VQSLOD=7.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:93:1254,93,0 3 10401856 rs2278554 G T 652.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.64;SB=-3.976e+01;SOR=4.615;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:57:681,57,0 3 10413341 rs55970333 C G 101.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.431;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=1.026;SB=0.00;SOR=0.412;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:6,4:10:99:130,0,202 3 10413921 rs56252495 G T 222.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=2.246;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-0.051;SB=-6.300e+01;SOR=1.714;VQSLOD=5.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,9:16:99:251,0,198 3 10420087 rs751122 T C 576.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.892;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-0.942;SB=-3.910e+02;SOR=0.569;VQSLOD=10.20;culprit=FS GT:AD:DP:GQ:PL 0/1:19,24:43:99:605,0,390 3 10420875 rs4684686 G A 603.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.19;SB=-1.175e+02;SOR=3.056;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:48:632,48,0 3 10421107 rs7616000 A G 456.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.671;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=-0.353;SB=-1.420e+02;SOR=0.936;VQSLOD=9.89;culprit=FS GT:AD:DP:GQ:PL 0/1:11,17:28:99:485,0,251 3 10436016 rs9858979 C T 320.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-3.976e+01;SOR=3.258;VQSLOD=7.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:349,27,0 3 11062062 rs3774070 C T 1047.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.952;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=2.355;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=0.607;SB=-2.320e+02;SOR=1.070;VQSLOD=7.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,37:73:99:1076,0,886 3 11075014 rs2675163 C T 363.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=0.00;SOR=4.977;VQSLOD=7.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:392,30,0 3 11075503 rs2246543 T C 276.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.409;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=-1.236;SB=0.00;SOR=0.412;VQSLOD=9.45;culprit=FS GT:AD:DP:GQ:PL 0/1:13,9:22:99:305,0,439 3 11276399 rs347614 T C 338.56 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=0.926;SB=-1.643e+02;SOR=0.793;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:1,14:15:7:366,0,7 3 11300707 rs901865 T C 1696.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.01;SB=-4.380e+02;SOR=2.437;VQSLOD=7.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,53:53:99:1725,123,0 3 11350553 rs2305686 C T 608.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.105;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=-0.826;SB=-2.630e+02;SOR=0.950;VQSLOD=7.88;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,24:52:99:637,0,607 3 11487891 rs2442798 G A 363.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.07;SB=-4.076e+01;SOR=3.442;VQSLOD=8.26;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:392,30,0 3 11596302 rs8154 T C 2490.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;DB;DP=226;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=0.512;SB=-1.447e+03;SOR=0.683;VQSLOD=6.25;culprit=DP GT:AD:DP:GQ:PL 0/1:124,102:226:99:2519,0,3057 3 11643465 rs2276749 T C 2293.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.99;SB=-5.280e+02;SOR=2.730;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:2322,169,0 3 11667714 rs3856802 C T 922.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.18;SB=-1.941e+02;SOR=2.753;VQSLOD=6.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:72:951,72,0 3 11685143 . T TA 421.94 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.999;DP=29;ExcessHet=3.0103;FS=3.440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.35;RPA=13,14;RU=A;ReadPosRankSum=1.664;SB=-4.954e+01;SOR=2.303;STR;VQSLOD=5.73;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:4,19:29:13:459,13,0 3 11744544 . G GA 382.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;DP=33;ExcessHet=3.0103;FS=3.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.20;RPA=6,7;RU=A;ReadPosRankSum=-1.426;SB=-1.910e+02;SOR=0.188;STR;VQSLOD=9.90;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,16:33:99:420,0,301 3 11744584 rs6781438 C T 250.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=-0.098;SB=-9.700e+01;SOR=0.375;VQSLOD=10.28;culprit=FS GT:AD:DP:GQ:PL 0/1:11,11:22:99:279,0,312 3 11880760 rs7641243 T C 721.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.704;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=2.353;HaplotypeScore=2.6912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=1.080;SB=-2.310e+02;SOR=1.231;VQSLOD=7.60;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,29:65:99:750,0,900 3 11880816 rs303862 C A 489.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.536;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=1.001;SB=-6.800e+01;SOR=0.693;VQSLOD=10.03;culprit=FS GT:AD:DP:GQ:PL 0/1:17,17:34:99:518,0,468 3 11886365 rs392621 T C 631.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.970;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=2.722;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.530;SB=-1.770e+02;SOR=1.432;VQSLOD=7.34;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,25:49:99:660,0,707 3 11887991 rs408600 C G 2030.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;DB;DP=140;Dels=0.00;ExcessHet=3.0103;FS=1.431;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=-1.107;SB=-7.590e+02;SOR=0.874;VQSLOD=7.34;culprit=DP GT:AD:DP:GQ:PL 0/1:66,74:140:99:2059,0,1696 3 11888259 rs420599 C G 334.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=0.317;SB=-3.677e+01;SOR=0.387;VQSLOD=9.39;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:363,0,226 3 11912635 rs6772434 C T 1052.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.09;SB=0.00;SOR=6.736;VQSLOD=8.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:84:1081,84,0 3 11925365 rs3927162 T A 1732.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.41;SB=-5.000e+02;SOR=2.419;VQSLOD=6.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1761,138,0 3 11925383 . A G 1861.77 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5130;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=26.98;SB=-7.320e+02;SOR=1.785;VQSLOD=4.29;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:1890,150,0 3 11926269 rs11713259 G A 414.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.56;SB=-3.577e+01;SOR=3.611;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:443,33,0 3 11926334 rs201353047 GTGTATGTGGAGTAATATCTCCCTA G 4051.73 PASS AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=65.15;MQ0=0;QD=17.46;SB=-6.981e+02;SOR=2.546;VQSLOD=0.388;culprit=QD GT:AD:DP:GQ:PL 1/1:0,29:31:87:4089,87,0 3 11926423 rs2055283 A G 2043.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-1.004e+03;SOR=1.352;VQSLOD=7.23;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,68:68:99:2072,147,0 3 11926467 . A G 2160.77 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=27.35;SB=-1.531e+03;SOR=0.718;VQSLOD=4.55;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:79:99:2189,154,0 3 11926508 rs391434 A G 1970.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.56;SB=-9.390e+02;SOR=1.211;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:1999,147,0 3 11926604 rs433987 A G 786.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.78;SB=-1.653e+02;SOR=2.925;VQSLOD=6.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:60:815,60,0 3 11942679 rs416407 C T 460.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.72;SB=-2.331e+02;SOR=1.112;VQSLOD=5.60;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:489,36,0 3 11947447 rs9845575 T C 469.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-1.951e+02;SOR=1.473;VQSLOD=5.87;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,15:15:36:498,36,0 3 11947455 rs9845581 T C 479.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.99;SB=-2.361e+02;SOR=1.244;VQSLOD=5.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:36:508,36,0 3 11947477 rs114755087 C T 82.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.2106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.91;ReadPosRankSum=0.389;SB=-4.400e+01;SOR=0.905;VQSLOD=8.65;culprit=QD GT:AD:DP:GQ:PL 0/1:9,5:15:99:111,0,225 3 11947492 rs9845599 T C 427.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.1995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.74;SB=-2.820e+02;SOR=0.693;VQSLOD=4.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:33:456,33,0 3 11947542 rs2470573 T C 683.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.49;SB=-4.490e+02;SOR=0.859;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:51:712,51,0 3 11947550 rs2448070 G C 679.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.56;SB=-4.240e+02;SOR=0.776;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:51:708,51,0 3 11947570 rs2448069 G C 541.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.20;SB=-2.870e+02;SOR=0.818;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:570,42,0 3 11947573 rs2470572 T C 498.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.85;SB=-2.471e+02;SOR=0.693;VQSLOD=5.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:15:39:527,39,0 3 11947579 rs2470571 T C 537.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.06;SB=-2.471e+02;SOR=1.112;VQSLOD=6.54;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,15:15:42:566,42,0 3 11947803 rs59064362 TC T 415.74 PASS AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.06;SB=-4.776e+01;SOR=3.258;VQSLOD=7.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:11:30:453,30,0 3 11947805 rs56306272 A G 339.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.98;SB=-4.276e+01;SOR=3.258;VQSLOD=5.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:368,27,0 3 11947825 rs60480446 TC T 386.74 PASS AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.50;SB=-4.876e+01;SOR=3.056;VQSLOD=7.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,9:10:27:424,27,0 3 11950682 rs62246116 C T 405.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.627;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.224;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=-0.972;SB=-9.200e+01;SOR=1.855;VQSLOD=5.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,15:25:99:434,0,195 3 11950686 . T C 419.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.560;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.224;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.79;ReadPosRankSum=-0.750;SB=-1.010e+02;SOR=1.855;VQSLOD=4.59;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,15:25:99:448,0,227 3 11951955 rs9857036 A G 183.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.336;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=2.297;SB=0.00;SOR=0.859;VQSLOD=8.69;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:5,6:11:99:212,0,158 3 11952073 rs3732961 C G 492.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.166;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=4.661;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=1.815;SB=-2.770e+02;SOR=1.093;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 0/1:19,21:40:99:521,0,463 3 12045850 rs62240360 G C 427.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.91;SB=0.00;SOR=5.283;VQSLOD=8.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:36:456,36,0 3 12045864 rs80251534 A T 417.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.1401;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.85;SB=0.00;SOR=5.549;VQSLOD=8.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:446,36,0 3 12045891 rs79624759 T C 615.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.27;SB=0.00;SOR=5.670;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:48:644,48,0 3 12045899 rs77368781 C T 657.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=0.00;SOR=6.184;VQSLOD=8.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:22:57:686,57,0 3 12045923 rs73135622 A C 959.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.3290;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=34.28;ReadPosRankSum=0.124;SB=-4.176e+01;SOR=3.841;VQSLOD=8.02;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,27:28:40:988,40,0 3 12045986 rs67270413 G A 1877.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.89;SB=-1.080e+03;SOR=1.078;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:1906,138,0 3 12046013 rs72624441 A C 1933.77 PASS AC=2;AF=1.00;AN=2;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.19;SB=-1.224e+03;SOR=0.758;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,62:62:99:1962,141,0 3 12046076 rs2618395 T C 1909.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.84;SB=-6.320e+02;SOR=2.231;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:1938,141,0 3 12046124 rs76272937 A G 915.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.57;SB=-7.997e+01;SOR=4.255;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:69:944,69,0 3 12046125 rs74800608 G C 842.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.44;SB=-4.276e+01;SOR=4.977;VQSLOD=5.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:66:871,66,0 3 12046131 rs74213196 A C 812.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.78;SB=-4.276e+01;SOR=4.892;VQSLOD=5.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:63:841,63,0 3 12046148 rs2623874 C T 733.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.94;SB=-3.976e+01;SOR=4.712;VQSLOD=4.17;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,21:21:60:762,60,0 3 12046168 rs2623875 A C 463.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.13;SB=-3.777e+01;SOR=3.912;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:492,42,0 3 12112010 rs598747 G A 138.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=-0.175;SB=-4.076e+01;SOR=0.223;VQSLOD=9.92;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:12:99:167,0,178 3 12112053 rs598704 G A 184.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.267;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-0.393;SB=-7.200e+01;SOR=0.368;VQSLOD=10.18;culprit=FS GT:AD:DP:GQ:PL 0/1:7,8:15:99:213,0,194 3 12112247 rs12489177 C T 163.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.003;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=-0.045;SB=-7.300e+01;SOR=0.669;VQSLOD=4.86;culprit=QD GT:AD:DP:GQ:PL 0/1:11,7:18:99:192,0,333 3 12192620 rs116875768 A G 188.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.096;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=-1.009;SB=0.00;SOR=0.250;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 0/1:14,7:21:99:217,0,470 3 12195622 rs308952 A G 269.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.869;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=0.889;SB=-1.765e+00;SOR=2.147;VQSLOD=6.27;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,10:18:99:298,0,259 3 12195674 rs3817004 A G 881.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.96;ReadPosRankSum=-0.267;SB=-1.330e+02;SOR=0.990;VQSLOD=9.89;culprit=FS GT:AD:DP:GQ:PL 0/1:23,29:52:99:910,0,657 3 12198617 rs2279750 A C 173.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=-0.976;SB=-2.701e+01;SOR=0.892;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:5,6:11:99:202,0,163 3 12202866 rs308950 C G 517.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=3.191;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-0.543;SB=-8.700e+01;SOR=1.329;VQSLOD=7.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:24,17:41:99:546,0,718 3 12208652 rs795008 A G 2020.77 PASS AC=2;AF=1.00;AN=2;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.68;SB=-5.770e+02;SOR=2.226;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:60:99:2049,147,0 3 12208671 rs795009 G T 890.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.094;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.941;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-0.351;SB=-3.780e+02;SOR=0.522;VQSLOD=9.47;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,35:75:99:919,0,1197 3 12208995 rs795010 T A 366.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.956;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.845;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-0.020;SB=-9.300e+01;SOR=0.352;VQSLOD=9.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,15:31:99:395,0,468 3 12210132 rs11916408 C T 992.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.027;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=2.367;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-0.437;SB=-2.100e+02;SOR=1.075;VQSLOD=7.50;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:35,36:71:99:1021,0,917 3 12210153 rs11924163 A G 910.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.515;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.743;HaplotypeScore=1.8320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=0.059;SB=-6.500e+01;SOR=1.123;VQSLOD=7.53;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,28:55:99:939,0,810 3 12211046 rs795011 G T 460.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.976;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=7.638;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=0.547;SB=-4.600e+01;SOR=2.008;VQSLOD=5.64;culprit=FS GT:AD:DP:GQ:PL 0/1:29,17:46:99:489,0,780 3 12211048 rs9844367 T C 762.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=7.638;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=-0.603;SB=-3.430e+02;SOR=0.144;VQSLOD=7.68;culprit=FS GT:AD:DP:GQ:PL 0/1:17,29:46:99:791,0,483 3 12229015 rs794999 A G 604.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=1.771;SB=-2.730e+02;SOR=0.711;VQSLOD=9.24;culprit=FS GT:AD:DP:GQ:PL 0/1:17,22:39:99:633,0,429 3 12232074 . A G 4541.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.835;DP=156;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=29.11;ReadPosRankSum=0.063;SB=-2.745e+03;SOR=0.859;VQSLOD=6.03;culprit=DP GT:AD:DP:GQ:PL 1/1:2,154:156:99:4570,304,0 3 12232208 rs310765 T G 2397.77 PASS AC=2;AF=1.00;AN=2;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.42;SB=-2.750e+02;SOR=3.947;VQSLOD=4.15;culprit=FS GT:AD:DP:GQ:PL 1/1:0,63:63:99:2426,178,0 3 12299313 rs9853146 A G 602.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.972;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=-0.320;SB=-3.520e+02;SOR=0.710;VQSLOD=7.02;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:31,27:58:99:631,0,761 3 12317654 rs34094208 GGAAA G 467.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.98;RPA=3,2;RU=GAAA;ReadPosRankSum=0.887;SB=-6.276e+01;SOR=0.593;STR;VQSLOD=7.99;culprit=FS GT:AD:DP:GQ:PL 0/1:4,9:13:99:505,0,211 3 12531421 . G A 655.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DP=68;Dels=0.00;ExcessHet=3.0103;FS=2.130;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.188;SB=-2.760e+02;SOR=1.055;VQSLOD=5.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,27:68:99:684,0,1101 3 12531461 rs78685815 G A 802.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.707;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=1.152;SB=-5.630e+02;SOR=0.679;VQSLOD=8.17;culprit=FS GT:AD:DP:GQ:PL 0/1:50,35:85:99:831,0,1295 3 12533505 rs74685105 C A 509.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.618;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=2.997;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-0.568;SB=-3.260e+02;SOR=0.330;VQSLOD=9.72;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,23:38:99:538,0,427 3 12533753 rs144898008 TA T 184.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;DB;DP=26;ExcessHet=3.0103;FS=2.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.11;RPA=2,1;RU=A;ReadPosRankSum=0.925;SB=-5.150e-01;SOR=1.514;STR;VQSLOD=5.32;culprit=QD GT:AD:DP:GQ:PL 0/1:19,7:26:99:222,0,775 3 12537924 rs17036841 T C 180.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=2.527;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=0.578;SB=-5.604e+01;SOR=0.197;VQSLOD=9.92;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,8:18:99:209,0,293 3 12538111 rs41293387 A G 469.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.503;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=1.092;SB=-2.710e+02;SOR=0.644;VQSLOD=8.40;culprit=FS GT:AD:DP:GQ:PL 0/1:27,21:48:99:498,0,668 3 12544779 rs77899976 G A 1013.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.894;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=0.804;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-1.108;SB=-5.900e+02;SOR=0.578;VQSLOD=9.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:46,45:91:99:1042,0,1347 3 12544841 rs142211875 A C 1073.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.475;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=5.213;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-0.303;SB=-6.580e+02;SOR=0.670;VQSLOD=3.56;culprit=FS GT:AD:DP:GQ:PL 0/1:50,44:95:99:1102,0,1448 3 12545091 rs3796329 T C 2311.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DB;DP=168;Dels=0.00;ExcessHet=3.0103;FS=3.551;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.152;SB=-1.240e+03;SOR=0.480;VQSLOD=7.04;culprit=DP GT:AD:DP:GQ:PL 0/1:83,85:168:99:2340,0,2081 3 12545493 rs76776919 A G 175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-0.125;SB=0.00;SOR=0.473;VQSLOD=9.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,6:14:99:204,0,248 3 12560560 rs17036879 G A 1196.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.790;DB;DP=109;Dels=0.00;ExcessHet=3.0103;FS=12.148;HaplotypeScore=2.8489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=1.007;SB=-5.900e+01;SOR=2.268;VQSLOD=4.36;culprit=FS GT:AD:DP:GQ:PL 0/1:67,41:109:99:1225,0,1892 3 12574137 rs79692336 G T 605.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=8.2257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=0.703;SB=-3.320e+02;SOR=0.716;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 0/1:33,24:57:99:634,0,729 3 12584635 rs12493091 T C 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.541;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=-1.396;SB=-1.040e+02;SOR=0.693;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:13,10:23:99:241,0,358 3 12584699 rs12496109 A G 212.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.250;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=3.256;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.86;ReadPosRankSum=2.313;SB=-1.190e+02;SOR=0.850;VQSLOD=4.11;culprit=QD GT:AD:DP:GQ:PL 0/1:19,12:31:99:241,0,447 3 12598839 rs2255655 C G 270.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=-1.138;SB=-1.765e+00;SOR=1.329;VQSLOD=8.46;culprit=FS GT:AD:DP:GQ:PL 0/1:12,9:21:99:299,0,391 3 12613866 . T C 1105.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.452;DP=86;Dels=0.00;ExcessHet=3.0103;FS=4.299;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.86;ReadPosRankSum=-1.548;SB=-4.400e+02;SOR=1.216;VQSLOD=5.57;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:41,45:86:99:1134,0,1096 3 12616533 rs3773341 G A 4723.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.469;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=33.50;ReadPosRankSum=1.253;SB=-1.513e+03;SOR=0.883;VQSLOD=4.10;culprit=FS GT:AD:DP:GQ:PL 1/1:1,140:141:99:4752,322,0 3 12626046 rs144876026 C T 1538.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;DB;DP=134;Dels=0.00;ExcessHet=3.0103;FS=6.756;HaplotypeScore=2.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.48;ReadPosRankSum=0.980;SB=-6.080e+02;SOR=1.257;VQSLOD=4.00;culprit=FS GT:AD:DP:GQ:PL 0/1:72,62:134:99:1567,0,1797 3 12626516 rs3729931 G A 813.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.916;DB;DP=100;Dels=0.00;ExcessHet=3.0103;FS=2.733;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.14;ReadPosRankSum=0.298;SB=-4.410e+02;SOR=1.061;VQSLOD=6.97;culprit=QD GT:AD:DP:GQ:PL 0/1:64,36:100:99:842,0,1884 3 12632652 rs2596831 G C 354.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=0.266;SB=0.00;SOR=0.892;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:9,11:20:99:383,0,309 3 12633168 rs2290161 A G 1219.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.263;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=3.772;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.712;SB=-4.860e+02;SOR=1.116;VQSLOD=7.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,51:106:99:1248,0,1400 3 12641518 rs2246390 A G 395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.418;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=5.798;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.83;ReadPosRankSum=0.056;SB=-2.730e+02;SOR=0.093;VQSLOD=8.46;culprit=FS GT:AD:DP:GQ:PL 0/1:3,16:19:69:424,0,69 3 12644881 rs5746212 A T 203.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.70;ReadPosRankSum=3.092;SB=-6.700e+01;SOR=0.425;VQSLOD=8.38;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:12,9:21:99:232,0,379 3 12650482 rs2454440 T A 2040.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.89;SB=-6.390e+02;SOR=2.231;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2069,157,0 3 12660291 rs3729926 C T 1546.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.94;SB=-4.330e+02;SOR=2.494;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1575,123,0 3 12776428 rs3732687 A C 2318.77 PASS AC=2;AF=1.00;AN=2;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.92;SB=-9.630e+02;SOR=1.673;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,75:75:99:2347,172,0 3 12779409 rs2271209 A G 1855.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.56;SB=-5.340e+02;SOR=2.428;VQSLOD=7.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1884,138,0 3 12780177 . A G 714.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.762;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.53;ReadPosRankSum=1.848;SB=-2.590e+02;SOR=0.791;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 0/1:36,26:62:99:743,0,839 3 12785235 rs73812877 C T 627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.576;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=8.415;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.94;ReadPosRankSum=1.502;SB=-1.180e+02;SOR=2.316;VQSLOD=5.46;culprit=FS GT:AD:DP:GQ:PL 0/1:15,20:35:99:656,0,397 3 12791172 rs937915 T C 2461.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;SB=-9.090e+02;SOR=2.026;VQSLOD=7.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2490,178,0 3 12791185 rs75552323 T G 1339.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.008;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=5.801;HaplotypeScore=2.5885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-0.366;SB=-4.130e+02;SOR=1.319;VQSLOD=6.16;culprit=FS GT:AD:DP:GQ:PL 0/1:43,50:93:99:1368,0,1046 3 12791255 rs3773330 G A 1787.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=3.326;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=-0.950;SB=-1.032e+03;SOR=1.051;VQSLOD=7.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,76:126:99:1816,0,1201 3 12829315 rs1985428 G A 162.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.14;ReadPosRankSum=-0.992;SB=-5.600e+01;SOR=1.022;VQSLOD=9.46;culprit=QD GT:AD:DP:GQ:PL 0/1:13,7:20:99:191,0,343 3 12838293 rs12631514 G C 1056.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.302;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=4.145;HaplotypeScore=4.3862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.188;SB=-6.480e+02;SOR=0.375;VQSLOD=9.32;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,45:88:99:1085,0,1044 3 12845158 rs9835677 G A 684.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.083;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=5.281;HaplotypeScore=1.9318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.40;ReadPosRankSum=-0.544;SB=-1.781e+02;SOR=0.087;VQSLOD=8.90;culprit=FS GT:AD:DP:GQ:PL 0/1:8,24:32:99:713,0,244 3 12845166 rs75214970 C T 170.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.506;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=5.383;HaplotypeScore=1.9318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.10;ReadPosRankSum=0.212;SB=-1.352e-01;SOR=2.194;VQSLOD=5.38;culprit=QD GT:AD:DP:GQ:PL 0/1:21,7:28:99:199,0,651 3 12848822 rs11718898 T C 806.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.140;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=0.388;SB=-4.490e+02;SOR=0.693;VQSLOD=8.71;culprit=QD GT:AD:DP:GQ:PL 0/1:58,34:92:99:835,0,1338 3 12849011 rs34529773 TA T 504.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.02;RPA=7,6;RU=A;ReadPosRankSum=-0.114;SB=-1.810e+02;SOR=0.787;STR;VQSLOD=9.68;culprit=FS GT:AD:DP:GQ:PL 0/1:19,23:47:99:542,0,461 3 12849031 . C CA 429.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;DP=38;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=-0.621;POSITIVE_TRAIN_SITE;QD=13.86;RPA=10,11;RU=A;ReadPosRankSum=-0.867;SB=-2.210e+02;SOR=0.531;STR;VQSLOD=0.344;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:10,21:38:99:467,0,170 3 12856856 rs2305398 A G 1679.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.636;DB;DP=132;Dels=0.00;ExcessHet=3.0103;FS=2.315;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-0.146;SB=-5.840e+02;SOR=0.936;VQSLOD=7.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:71,61:132:99:1708,0,1813 3 12857493 rs2305397 C T 372.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=4.382;HaplotypeScore=1.7882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.54;ReadPosRankSum=1.892;SB=-8.200e+01;SOR=1.505;VQSLOD=5.29;culprit=QD GT:AD:DP:GQ:PL 0/1:41,16:57:99:401,0,1162 3 12857823 rs731646 C T 616.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.720;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=1.289;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=-0.864;SB=-3.470e+02;SOR=0.655;VQSLOD=6.20;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,22:39:99:645,0,449 3 12858028 rs3732675 T C 651.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.381;SB=-3.280e+02;SOR=0.567;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:34,26:60:99:680,0,854 3 12859004 . A C 461.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.203;DP=36;Dels=0.00;ExcessHet=3.0103;FS=4.646;HaplotypeScore=1.9991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.83;ReadPosRankSum=1.408;SB=-2.610e+02;SOR=0.662;VQSLOD=3.96;culprit=FS GT:AD:DP:GQ:PL 0/1:18,18:36:99:490,0,516 3 12875443 . G A 1271.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.309;DP=102;Dels=0.00;ExcessHet=3.0103;FS=0.843;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=12.47;ReadPosRankSum=0.057;SB=-3.970e+02;SOR=0.968;VQSLOD=6.29;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:55,47:102:99:1300,0,1519 3 12941094 rs3773308 G A 1504.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.10;SB=-4.640e+02;SOR=2.303;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1533,117,0 3 12942850 rs56387830 GC G 3149.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.747;DB;DP=74;ExcessHet=3.0103;FS=5.470;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=31.12;RPA=2,1;RU=C;ReadPosRankSum=1.054;SB=-8.030e+02;SOR=1.926;STR;VQSLOD=5.01;culprit=FS GT:AD:DP:GQ:PL 1/1:1,73:74:99:3187,181,0 3 12944170 . CA C 126.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;DP=26;ExcessHet=3.0103;FS=7.144;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=0.000;QD=5.51;RPA=24,23;RU=A;ReadPosRankSum=-0.831;SB=-8.000e+01;SOR=0.096;STR;VQSLOD=5.99;culprit=QD GT:AD:DP:GQ:PL 0/1:12,11:26:99:164,0,197 3 13008814 rs72624444 G C 330.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.08;SB=-3.876e+01;SOR=3.258;VQSLOD=5.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:359,27,0 3 13114408 rs463268 A C 304.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=0.209;SB=-6.700e+01;SOR=0.741;VQSLOD=10.18;culprit=FS GT:AD:DP:GQ:PL 0/1:16,12:28:99:333,0,445 3 13114691 rs74753289 G A 317.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.69;ReadPosRankSum=0.738;SB=0.00;SOR=1.061;VQSLOD=9.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,10:17:99:346,0,228 3 13359433 rs354477 G A 451.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.684;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=2.127;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=1.319;SB=-2.801e+01;SOR=1.414;VQSLOD=6.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,15:34:99:480,0,563 3 13360513 rs184930 C T 154.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.919;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.37;ReadPosRankSum=0.195;SB=-1.765e+00;SOR=0.627;VQSLOD=9.38;culprit=QD GT:AD:DP:GQ:PL 0/1:15,6:21:99:183,0,496 3 13361040 rs71918947 A AGAG 578.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.137;DB;DP=18;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=32.15;RPA=1,2;RU=GAG;ReadPosRankSum=-0.544;SB=-1.610e+02;SOR=1.445;STR;VQSLOD=4.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,11:18:99:616,0,362 3 13361238 rs2276748 C T 433.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.51;ReadPosRankSum=0.122;SB=-2.220e+02;SOR=0.544;VQSLOD=9.17;culprit=QD GT:AD:DP:GQ:PL 0/1:35,16:51:99:462,0,961 3 13361287 rs354478 C T 393.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.983;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=4.373;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.88;ReadPosRankSum=-1.249;SB=-1.320e+02;SOR=1.436;VQSLOD=6.32;culprit=QD GT:AD:DP:GQ:PL 0/1:34,16:50:99:422,0,1016 3 13361391 rs354479 A G 1536.77 PASS AC=2;AF=1.00;AN=2;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.13;SB=-7.990e+02;SOR=0.994;VQSLOD=5.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,51:51:99:1565,114,0 3 13364876 rs514084 G T 907.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.693;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=0.316;SB=-4.760e+02;SOR=0.742;VQSLOD=9.20;culprit=FS GT:AD:DP:GQ:PL 0/1:30,36:66:99:936,0,772 3 13367406 rs665064 C T 532.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.548;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=6.038;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=1.018;SB=-1.370e+02;SOR=1.733;VQSLOD=5.98;culprit=FS GT:AD:DP:GQ:PL 0/1:36,20:56:99:561,0,866 3 13368892 rs2271509 G A 661.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.521;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=1.186;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-0.808;SB=-1.930e+02;SOR=1.044;VQSLOD=8.01;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,24:52:99:690,0,724 3 13379400 rs3773302 C T 151.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.634;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.60;ReadPosRankSum=-0.364;SB=-7.300e+01;SOR=1.281;VQSLOD=4.89;culprit=QD GT:AD:DP:GQ:PL 0/1:24,9:33:99:180,0,644 3 13379452 rs3773301 G A 138.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.533;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.703;HaplotypeScore=3.6108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.21;ReadPosRankSum=0.154;SB=-3.600e+01;SOR=1.179;VQSLOD=5.26;culprit=QD GT:AD:DP:GQ:PL 0/1:26,7:33:99:167,0,625 3 13383540 rs2271504 A G 847.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.479;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=1.904;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-1.437;SB=-5.130e+02;SOR=0.487;VQSLOD=9.14;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,33:76:99:876,0,1164 3 13393166 rs11292029 CT C 77.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;DB;DP=14;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.55;RPA=11,10;RU=T;ReadPosRankSum=-0.753;SB=-2.877e+01;SOR=0.105;STR;VQSLOD=8.60;culprit=QD GT:AD:DP:GQ:PL 0/1:8,6:14:99:115,0,188 3 13395475 rs2280085 G C 1158.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.278;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=1.929;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=0.435;SB=-6.040e+02;SOR=0.451;VQSLOD=9.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,39:75:99:1187,0,967 3 13395579 rs2280084 C A 1483.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.979;DB;DP=99;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=-2.429;SB=-8.440e+02;SOR=0.722;VQSLOD=8.47;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:45,54:99:99:1512,0,1104 3 13407556 rs3732671 T C 619.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;DB;DP=49;Dels=0.02;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.8990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.021;SB=-3.880e+02;SOR=0.551;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:20,28:48:99:648,0,510 3 13415146 rs6810356 G T 1810.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.642;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=2.238;SB=-2.560e+02;SOR=0.808;VQSLOD=7.32;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:53,65:118:99:1839,0,1515 3 13418086 rs6442377 C A 748.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.045;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=2.280;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.64;ReadPosRankSum=0.831;SB=-3.000e+01;SOR=1.445;VQSLOD=6.64;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:21,24:45:99:777,0,650 3 13420624 rs6442378 G A 221.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.507;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=-0.896;SB=-1.765e+00;SOR=1.981;VQSLOD=8.38;culprit=FS GT:AD:DP:GQ:PL 0/1:8,9:17:99:250,0,272 3 13421150 rs7628051 C T 343.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.138;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=11.684;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.47;ReadPosRankSum=-0.023;SB=-1.510e+02;SOR=1.176;VQSLOD=5.92;culprit=QD GT:AD:DP:GQ:PL 0/1:29,17:46:99:372,0,791 3 13427998 rs6442380 G T 311.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.78;ReadPosRankSum=-0.307;SB=0.00;SOR=1.473;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 0/1:5,10:15:99:340,0,143 3 13432581 rs6442382 A G 431.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.745;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.56;ReadPosRankSum=-1.638;SB=0.00;SOR=1.230;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:8,13:21:99:460,0,238 3 13433120 rs9825991 C T 36.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.025;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=8.751;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.68;ReadPosRankSum=-0.816;SB=-5.600e+01;SOR=0.020;VQSLOD=4.91;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:65:65,0,221 3 13438830 rs13066607 A G 409.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.205;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=5.519;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.82;ReadPosRankSum=0.372;SB=-2.302e+01;SOR=2.448;VQSLOD=5.79;culprit=FS GT:AD:DP:GQ:PL 0/1:10,13:23:99:438,0,299 3 13523010 rs2655218 T C 290.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.167;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=4.833;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.59;ReadPosRankSum=-0.320;SB=-6.800e+01;SOR=1.609;VQSLOD=5.50;culprit=QD GT:AD:DP:GQ:PL 0/1:38,14:52:99:319,0,976 3 13574075 rs9827959 C G 603.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=1.415;HaplotypeScore=5.3831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=0.119;SB=-1.790e+02;SOR=1.088;VQSLOD=7.11;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,23:38:99:632,0,333 3 13663559 rs3773263 C T 254.80 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.48;SB=-4.176e+01;SOR=3.258;VQSLOD=5.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:21:283,21,0 3 13669537 rs1966825 T G 1290.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.97;SB=-2.471e+02;SOR=3.145;VQSLOD=6.75;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:96:1319,96,0 3 13670481 rs2242023 A G 3279.77 PASS AC=2;AF=1.00;AN=2;DB;DP=112;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.55;SB=-2.075e+03;SOR=0.748;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:0,111:112:99:3308,247,0 3 13670536 rs9843344 A G 4449.77 PASS AC=2;AF=1.00;AN=2;DB;DP=139;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.01;SB=-2.761e+03;SOR=0.737;VQSLOD=6.42;culprit=FS GT:AD:DP:GQ:PL 1/1:0,139:139:99:4478,328,0 3 13670776 rs4684968 T C 2134.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.65;SB=-7.370e+02;SOR=2.239;VQSLOD=6.96;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2163,169,0 3 13670837 rs4684969 T G 1065.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.91;SB=-7.997e+01;SOR=4.407;VQSLOD=5.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:81:1094,81,0 3 13672505 rs976569 T C 451.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.42;SB=0.00;SOR=5.136;VQSLOD=7.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:480,36,0 3 13678173 rs2290188 G T 331.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.97;ReadPosRankSum=-0.125;SB=-9.800e+01;SOR=0.641;VQSLOD=9.42;culprit=FS GT:AD:DP:GQ:PL 0/1:23,14:37:99:360,0,687 3 13679044 rs4684148 G A 2265.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.325;DB;DP=175;Dels=0.00;ExcessHet=3.0103;FS=3.673;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=2.119;SB=-9.720e+02;SOR=1.031;VQSLOD=6.63;culprit=DP GT:AD:DP:GQ:PL 0/1:86,89:175:99:2294,0,2040 3 13679203 rs1061375 G A 2592.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.243;DB;DP=165;Dels=0.00;ExcessHet=3.0103;FS=1.278;HaplotypeScore=5.4804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.655;SB=-1.067e+03;SOR=0.827;VQSLOD=8.11;culprit=DP GT:AD:DP:GQ:PL 0/1:71,94:165:99:2621,0,1844 3 13679335 rs1061376 C T 935.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.246;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=0.546;SB=-4.260e+02;SOR=0.589;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:32,35:67:99:964,0,745 3 13679829 rs7820 C T 295.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.648;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=1.496;SB=-7.001e+01;SOR=0.646;VQSLOD=6.58;culprit=FS GT:AD:DP:GQ:PL 0/1:7,11:18:99:324,0,208 3 13679855 . T A 193.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.489;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=4.7871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.15;ReadPosRankSum=1.076;SB=-7.197e+01;SOR=0.368;VQSLOD=8.15;culprit=FS GT:AD:DP:GQ:PL 0/1:3,9:12:86:222,0,86 3 13895817 rs3762720 C G 169.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.364;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=1.189;SB=0.00;SOR=0.569;VQSLOD=10.14;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:13:99:198,0,243 3 13896140 rs3762719 A G 1976.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.868;DB;DP=159;Dels=0.00;ExcessHet=3.0103;FS=1.972;HaplotypeScore=2.7475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-1.444;SB=-1.181e+03;SOR=0.537;VQSLOD=7.11;culprit=DP GT:AD:DP:GQ:PL 0/1:80,79:159:99:2005,0,2165 3 13896284 rs12639607 C T 1258.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.609;DB;DP=75;Dels=0.00;ExcessHet=3.0103;FS=3.742;HaplotypeScore=3.6281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=0.471;SB=-4.830e+02;SOR=0.285;VQSLOD=9.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,47:75:99:1287,0,694 3 13916407 rs3749319 G T 2656.77 PASS AC=2;AF=1.00;AN=2;DB;DP=86;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.89;SB=-6.940e+02;SOR=2.303;VQSLOD=7.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:86:99:2685,199,0 3 13977632 rs72624463 C G 142.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=7.404;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=0.528;SB=-8.197e+01;SOR=0.036;VQSLOD=8.38;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:171,0,206 3 13977703 rs6773180 A C 628.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;SB=-2.351e+02;SOR=1.721;VQSLOD=6.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:48:657,48,0 3 13977973 rs72624464 C T 154.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.640;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=1.721;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.19;ReadPosRankSum=0.575;SB=-9.300e+01;SOR=0.374;VQSLOD=8.27;culprit=QD GT:AD:DP:GQ:PL 0/1:18,7:25:99:183,0,482 3 13978801 rs2009781 A G 1942.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.85;SB=-1.070e+03;SOR=0.941;VQSLOD=6.62;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1971,150,0 3 13978803 rs6776709 A G 882.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.379;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.983;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=0.058;SB=-4.130e+02;SOR=0.922;VQSLOD=7.95;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:32,29:61:99:911,0,808 3 14106499 rs2607779 G A 435.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.215;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.90;ReadPosRankSum=0.716;SB=-1.640e+02;SOR=0.627;VQSLOD=9.89;culprit=FS GT:AD:DP:GQ:PL 0/1:26,18:44:99:464,0,730 3 14123156 rs72624473 T C 350.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.902;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=7.359;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=-0.983;SB=-1.810e+02;SOR=0.842;VQSLOD=5.37;culprit=FS GT:AD:DP:GQ:PL 0/1:24,15:39:99:379,0,693 3 14154231 rs2731316 T G 675.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.18;SB=-1.115e+02;SOR=2.200;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:51:704,51,0 3 14154816 rs72624478 C T 733.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.571;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=4.062;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=-0.445;SB=-4.850e+02;SOR=0.278;VQSLOD=9.82;culprit=SOR GT:AD:DP:GQ:PL 0/1:22,30:52:99:762,0,547 3 14158220 rs2731313 G A 209.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=0.718;SB=-4.176e+01;SOR=0.180;VQSLOD=9.01;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:238,0,267 3 14166394 rs2733578 T C 194.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.27;ReadPosRankSum=1.015;SB=-5.900e+01;SOR=0.542;VQSLOD=9.26;culprit=FS GT:AD:DP:GQ:PL 0/1:13,8:21:99:223,0,438 3 14166835 rs2733579 C T 286.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.483;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=3.590;HaplotypeScore=1.8490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.92;ReadPosRankSum=-1.097;SB=-1.765e+00;SOR=2.215;VQSLOD=5.62;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,9:16:99:315,0,169 3 14170565 rs75536858 GA G 521.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;DB;DP=36;ExcessHet=3.0103;FS=3.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.35;RPA=2,1;RU=A;ReadPosRankSum=0.920;SB=-1.990e+02;SOR=0.284;STR;VQSLOD=9.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:19,15:36:99:559,0,752 3 14173963 rs4685074 G T 4423.77 PASS AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.69;SB=-2.465e+03;SOR=0.978;VQSLOD=6.84;culprit=FS GT:AD:DP:GQ:PL 1/1:0,149:149:99:4452,334,0 3 14174146 rs4685075 T C 2314.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.06;SB=-7.930e+02;SOR=2.155;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2343,184,0 3 14174427 rs4685076 A T 1063.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.934;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=0.161;SB=-6.840e+02;SOR=0.641;VQSLOD=9.09;culprit=FS GT:AD:DP:GQ:PL 0/1:31,46:77:99:1092,0,813 3 14175262 rs2340917 T C 2876.77 PASS AC=2;AF=1.00;AN=2;DB;DP=98;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.35;SB=-1.705e+03;SOR=0.776;VQSLOD=6.14;culprit=FS GT:AD:DP:GQ:PL 1/1:0,98:98:99:2905,214,0 3 14176446 rs6766740 G A 735.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.342;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=3.305;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.587;SB=-9.300e+01;SOR=1.362;VQSLOD=7.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,27:53:99:764,0,763 3 14177251 rs3796311 G A 383.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=-0.057;SB=-3.876e+01;SOR=0.990;VQSLOD=10.12;culprit=FS GT:AD:DP:GQ:PL 0/1:4,13:17:98:412,0,98 3 14180552 rs2607767 A G 525.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.93;SB=-8.297e+01;SOR=3.383;VQSLOD=7.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:45:554,45,0 3 14187449 rs2228001 G T 751.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.07;SB=-3.540e+02;SOR=1.358;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:57:780,57,0 3 14188700 rs2733533 C A 1176.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.514;DB;DP=78;Dels=0.00;ExcessHet=3.0103;FS=1.055;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=-0.581;SB=-2.530e+02;SOR=0.992;VQSLOD=7.93;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,41:78:99:1205,0,1097 3 14188762 rs2733534 G C 2108.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.591;DB;DP=144;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=-0.217;SB=-1.074e+03;SOR=0.653;VQSLOD=8.84;culprit=FS GT:AD:DP:GQ:PL 0/1:65,79:144:99:2137,0,1686 3 14189340 rs2607749 A G 257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.672;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.282;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.190;SB=-2.801e+01;SOR=1.609;VQSLOD=6.06;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:11,9:20:99:286,0,278 3 14190237 rs2279017 T G 4057.77 PASS AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.99;SB=-2.288e+03;SOR=0.776;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,123:123:99:4086,298,0 3 14190268 rs2470353 G C 1216.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;DB;DP=126;Dels=0.00;ExcessHet=3.0103;FS=1.445;HaplotypeScore=4.7119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.73;ReadPosRankSum=-0.003;SB=-7.140e+02;SOR=0.837;VQSLOD=7.04;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:77,48:126:99:1245,0,2217 3 14194023 rs3729584 C T 395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.133;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=2.012;HaplotypeScore=2.7329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.92;ReadPosRankSum=2.000;SB=-6.900e+01;SOR=0.307;VQSLOD=8.44;culprit=QD GT:AD:DP:GQ:PL 0/1:31,19:50:99:424,0,1017 3 14194094 rs3731149 T G 311.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.32;ReadPosRankSum=0.403;SB=0.00;SOR=0.914;VQSLOD=10.38;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:340,0,223 3 14197987 rs2958057 A T 4464.77 PASS AC=2;AF=1.00;AN=2;DB;DP=146;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.58;SB=-2.480e+03;SOR=1.002;VQSLOD=5.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,146:146:99:4493,331,0 3 14208625 rs3729587 G C 2496.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.790;DB;DP=81;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8315;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.82;ReadPosRankSum=1.668;SB=-1.265e+03;SOR=0.439;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:1,80:81:99:2525,150,0 3 14208630 rs3729588 G A 1136.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;DB;DP=88;Dels=0.00;ExcessHet=3.0103;FS=4.113;HaplotypeScore=2.5655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=0.434;SB=-5.240e+02;SOR=1.219;VQSLOD=7.61;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,45:88:99:1165,0,1053 3 14211865 rs3731081 C A 103.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.379;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.49;ReadPosRankSum=-0.794;SB=0.00;SOR=0.223;VQSLOD=9.75;culprit=QD GT:AD:DP:GQ:PL 0/1:11,5:16:99:132,0,390 3 14220023 rs1870134 G C 2155.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.292;DB;DP=167;Dels=0.00;ExcessHet=3.0103;FS=1.484;HaplotypeScore=6.3898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.493;SB=-6.160e+02;SOR=0.545;VQSLOD=7.04;culprit=DP GT:AD:DP:GQ:PL 0/1:91,76:167:99:2184,0,2649 3 14220095 rs2607775 C G 3510.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.463;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=1.545;HaplotypeScore=3.6597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=0.825;SB=-1.797e+03;SOR=0.581;VQSLOD=6.29;culprit=DP GT:AD:DP:GQ:PL 0/1:127,123:250:99:3539,0,3510 3 14220439 rs3731055 C T 515.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.535;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=1.257;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=-2.758;SB=-2.080e+02;SOR=0.495;VQSLOD=8.64;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:25,21:46:99:544,0,723 3 14444243 rs67046817 CT C 2766.73 PASS AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.51;SB=-1.092e+03;SOR=1.355;VQSLOD=5.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,60:63:99:2804,181,0 3 14444249 rs66528743 CT C 2738.73 PASS AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.03;SB=-9.920e+02;SOR=1.493;VQSLOD=6.59;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:59:99:2776,175,0 3 14444276 rs66873458 GC G 2165.73 PASS AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.77;RPA=2,1;RU=C;SB=-7.250e+02;SOR=1.609;STR;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,52:53:99:2203,157,0 3 14444285 rs66774122 GC G 2075.73 PASS AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.91;RPA=2,1;RU=C;SB=-5.920e+02;SOR=1.931;STR;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:2113,138,0 3 14444308 rs68047955 CT C 1574.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.972;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=6.247;POSITIVE_TRAIN_SITE;QD=28.15;ReadPosRankSum=-0.964;SB=-3.810e+02;SOR=1.132;VQSLOD=2.67;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,37:38:99:1612,101,0 3 14444318 rs67637606 CT C 1186.73 PASS AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.36;SB=-2.351e+02;SOR=2.670;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:32:78:1224,78,0 3 14444326 rs66654032 AT A 1110.73 PASS AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.74;SB=-2.371e+02;SOR=2.494;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:72:1148,72,0 3 14444329 rs67559364 CT C 1031.73 PASS AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=40.62;SB=-2.471e+02;SOR=2.400;VQSLOD=3.69;culprit=QD GT:AD:DP:GQ:PL 1/1:0,23:23:69:1069,69,0 3 14486392 rs3773189 A G 1880.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.99;SB=-2.877e+01;SOR=5.549;VQSLOD=3.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1909,141,0 3 14489057 rs77074078 G A 1575.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.877;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.683;HaplotypeScore=2.6141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=-0.132;SB=-6.950e+02;SOR=0.789;VQSLOD=7.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:66,57:123:99:1604,0,1614 3 14489370 rs2304511 G T 785.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.344;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=1.932;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=-0.212;SB=-3.330e+02;SOR=0.994;VQSLOD=7.76;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:45,32:77:99:814,0,1221 3 14513695 rs2289128 G A 624.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=5.864;HaplotypeScore=5.2364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=0.591;SB=-2.520e+02;SOR=1.364;VQSLOD=6.69;culprit=FS GT:AD:DP:GQ:PL 0/1:26,23:49:99:653,0,669 3 14513925 rs2289127 C T 234.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-0.611;SB=-4.276e+01;SOR=0.223;VQSLOD=9.41;culprit=FS GT:AD:DP:GQ:PL 0/1:8,9:17:99:263,0,228 3 14519885 rs2241781 A T 379.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.187;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=1.804;SB=-6.400e+01;SOR=1.042;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 0/1:19,14:33:99:408,0,493 3 14520164 rs2241780 A G 553.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.250;DB;DP=45;Dels=0.00;ExcessHet=3.0103;FS=3.183;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.425;SB=-9.000e+01;SOR=1.358;VQSLOD=7.70;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,19:45:99:582,0,679 3 14526318 rs200717708 G T 272.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.506;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.64;ReadPosRankSum=-0.832;SB=-3.677e+01;SOR=0.188;VQSLOD=8.19;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:301,0,306 3 14526361 rs202033926 T C 457.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.106;DB;DP=34;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.46;ReadPosRankSum=-1.450;SB=-9.600e+01;SOR=0.569;VQSLOD=8.39;culprit=FS GT:AD:DP:GQ:PL 0/1:18,16:34:99:486,0,498 3 14526521 rs114264993 C T 1327.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.499;DB;DP=96;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.6637;MLEAC=1;MLEAF=0.500;MQ=60.11;MQ0=0;MQRankSum=-1.089;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=0.435;SB=-8.410e+02;SOR=0.760;VQSLOD=2.67;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,53:96:99:1356,0,1150 3 14526538 rs1062540 G A 1006.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.005;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.11;MQ0=0;MQRankSum=1.145;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=-0.259;SB=-6.180e+02;SOR=0.749;VQSLOD=2.65;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:53,42:95:99:1035,0,1360 3 14526612 rs35363110 AT A 374.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.060;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQ0=0;MQRankSum=1.286;POSITIVE_TRAIN_SITE;QD=5.59;RPA=13,12;RU=T;ReadPosRankSum=0.965;SB=-1.540e+02;SOR=0.657;STR;VQSLOD=1.17;culprit=QD GT:AD:DP:GQ:PL 0/1:41,26:74:99:412,0,940 3 14526656 rs1126666 A G 448.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.285;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=3.391;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-1.771;SB=-1.700e+02;SOR=0.223;VQSLOD=9.45;culprit=SOR GT:AD:DP:GQ:PL 0/1:23,16:39:99:477,0,614 3 14526667 . C CGT 517.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;DP=36;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.18;RPA=9,10;RU=GT;ReadPosRankSum=1.343;SB=-2.901e+01;SOR=1.646;STR;VQSLOD=5.78;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:12,15:36:99:555,0,382 3 14537867 rs11918344 A G 772.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.834;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=11.823;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=-1.075;SB=-2.630e+02;SOR=1.589;VQSLOD=5.24;culprit=FS GT:AD:DP:GQ:PL 0/1:18,26:44:99:801,0,430 3 14538072 rs11333211 CA C 2449.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;DB;DP=154;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.91;RPA=2,1;RU=A;ReadPosRankSum=-0.011;SB=-1.129e+03;SOR=0.780;STR;VQSLOD=8.51;culprit=DP GT:AD:DP:GQ:PL 0/1:89,65:154:99:2487,0,3589 3 14538339 rs7638680 A C 1052.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.15;SB=-2.401e+02;SOR=2.546;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:78:1081,78,0 3 14548899 . C G 590.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.611;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-1.217;SB=-1.720e+02;SOR=0.723;VQSLOD=8.00;culprit=FS GT:AD:DP:GQ:PL 0/1:22,19:41:99:619,0,578 3 14549142 rs368701302 C T 1039.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;DB;DP=120;Dels=0.00;ExcessHet=3.0103;FS=1.497;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.66;ReadPosRankSum=0.888;SB=-6.310e+02;SOR=0.553;VQSLOD=7.09;culprit=QD GT:AD:DP:GQ:PL 0/1:74,46:120:99:1068,0,1908 3 14551444 rs9845816 A G 972.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.649;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=2.309;SB=-6.600e+02;SOR=0.679;VQSLOD=8.53;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:53,40:93:99:1001,0,1354 3 14552649 rs111494184 A G 1267.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.666;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=2.506;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=0.037;SB=-7.220e+02;SOR=0.985;VQSLOD=7.43;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:54,53:107:99:1296,0,1475 3 14552994 rs4685168 A G 462.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-1.095e+02;SOR=2.448;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:491,36,0 3 14554476 rs4516597 T C 1220.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.291;DB;DP=117;Dels=0.00;ExcessHet=3.0103;FS=1.507;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=1.531;SB=-6.370e+02;SOR=0.855;VQSLOD=6.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:68,49:117:99:1249,0,1727 3 14555216 rs4685171 T C 633.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=0.230;SB=-3.810e+02;SOR=0.616;VQSLOD=9.29;culprit=FS GT:AD:DP:GQ:PL 0/1:37,25:62:99:662,0,987 3 14555411 rs28462294 A C 97.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=0.179;SB=0.00;SOR=0.330;VQSLOD=9.06;culprit=QD GT:AD:DP:GQ:PL 0/1:7,4:11:99:126,0,221 3 14555758 rs67589576 C CAGTT 647.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;DB;DP=18;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.99;ReadPosRankSum=-1.333;SB=-2.650e+02;SOR=0.877;VQSLOD=4.87;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:8,10:18:99:685,0,492 3 14555811 rs4613440 A G 216.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.985;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=1.600;SB=-1.330e+02;SOR=0.593;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:12,9:21:99:245,0,313 3 14561627 . A AG 1432.73 PASS AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.72;RPA=2,3;RU=G;SB=-4.640e+02;SOR=1.675;STR;VQSLOD=7.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,35:36:99:1470,105,0 3 14562108 rs373604526 C A 1044.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.015;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=2.493;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=16.32;ReadPosRankSum=-0.984;SB=-3.030e+02;SOR=1.225;VQSLOD=5.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:25,39:65:99:1073,0,573 3 14562981 rs368525249 A G 395.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.33;ReadPosRankSum=-1.350;SB=-2.480e+02;SOR=0.628;VQSLOD=7.30;culprit=QD GT:AD:DP:GQ:PL 0/1:35,19:54:99:424,0,822 3 14563151 rs372862397 G C 525.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.173;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=2.747;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.48;ReadPosRankSum=-0.686;SB=-3.090e+02;SOR=1.179;VQSLOD=6.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,23:39:99:554,0,455 3 14563258 rs4234526 A G 193.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.992;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=-0.635;SB=-2.501e+01;SOR=0.859;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:14,7:21:99:222,0,411 3 14565017 rs4685173 G A 264.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.921;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=11.732;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.54;ReadPosRankSum=0.814;SB=-1.780e+02;SOR=0.038;VQSLOD=5.18;culprit=FS GT:AD:DP:GQ:PL 0/1:17,14:31:99:293,0,585 3 14567627 rs7613925 G C 293.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.875;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.58;ReadPosRankSum=0.261;SB=-3.777e+01;SOR=0.793;VQSLOD=8.71;culprit=FS GT:AD:DP:GQ:PL 0/1:4,11:15:99:322,0,125 3 14581594 rs6442461 A G 88.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.88;ReadPosRankSum=1.693;SB=0.00;SOR=0.412;VQSLOD=9.14;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:99:117,0,192 3 14583668 . T TTA 107.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;DP=29;ExcessHet=3.0103;FS=6.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.133;SB=-5.150e-01;SOR=2.566;VQSLOD=3.95;culprit=QD GT:AD:DP:GQ:PL 0/1:17,12:29:99:145,0,702 3 14583669 . A T 288.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.865;DP=26;Dels=0.00;ExcessHet=3.0103;FS=5.825;HaplotypeScore=1.9661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.11;ReadPosRankSum=1.241;SB=-5.150e-01;SOR=2.387;VQSLOD=4.34;culprit=FS GT:AD:DP:GQ:PL 0/1:16,10:26:99:317,0,471 3 14702848 . A AT 368.82 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.446;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=24.59;RPA=7,8;RU=T;ReadPosRankSum=1.157;SB=-6.397e+01;SOR=1.739;STR;VQSLOD=9.10;culprit=FS GT:AD:DP:GQ:PL 1/1:1,14:15:17:406,17,0 3 14702982 rs2276754 C A 1498.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.423;DB;DP=52;Dels=0.00;ExcessHet=3.0103;FS=3.181;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=28.82;ReadPosRankSum=0.933;SB=-9.030e+02;SOR=0.408;VQSLOD=5.48;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,51:52:77:1527,77,0 3 14703401 rs55915506 CATAATTACA C 2064.73 PASS AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.11;RPA=3,2;RU=ATAATTACA;SB=0.00;SOR=5.994;STR;VQSLOD=3.33;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:33:57:2102,57,0 3 14706770 rs67313681 A ATTGG 1555.73 PASS AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.32;SB=-8.176e+01;SOR=4.804;VQSLOD=6.90;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,22:22:66:1593,66,0 3 14708918 rs2280383 A G 2363.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.55;SB=-1.328e+03;SOR=1.031;VQSLOD=7.04;culprit=FS GT:AD:DP:GQ:PL 1/1:0,80:80:99:2392,181,0 3 14725668 rs12488352 G A 686.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.34;SB=-4.276e+01;SOR=4.615;VQSLOD=8.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:57:715,57,0 3 14731259 rs1864901 C T 207.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.971;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=3.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=1.379;SB=-4.176e+01;SOR=0.124;VQSLOD=9.82;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,8:18:99:236,0,347 3 14731410 . C T 527.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.371;DP=40;Dels=0.00;ExcessHet=3.0103;FS=2.814;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=13.53;ReadPosRankSum=0.141;SB=-2.310e+02;SOR=1.292;VQSLOD=6.16;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,19:40:99:556,0,530 3 14756730 rs9869372 A G 921.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.043;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=-2.337;SB=-1.820e+02;SOR=0.606;VQSLOD=9.33;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:21,30:51:99:950,0,593 3 14763954 rs12486391 G A 394.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.574;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.127;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-0.298;SB=-1.970e+02;SOR=1.609;VQSLOD=6.63;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,19:35:99:423,0,458 3 14768534 rs7636830 A G 1312.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.288;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=4.071;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=-0.748;SB=-6.460e+02;SOR=1.077;VQSLOD=7.33;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:42,47:89:99:1341,0,1080 3 14770271 rs55877518 A G 242.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=0.204;SB=0.00;SOR=0.693;VQSLOD=9.37;culprit=FS GT:AD:DP:GQ:PL 0/1:8,8:16:99:271,0,252 3 14905513 rs172429 T G 961.77 PASS AC=2;AF=1.00;AN=2;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.32;SB=-1.941e+02;SOR=2.753;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,27:27:72:990,72,0 3 14939198 rs2117775 G A 2180.77 PASS AC=2;AF=1.00;AN=2;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.07;SB=-6.510e+02;SOR=2.235;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,68:68:99:2209,163,0 3 14939364 rs2117774 G A 874.77 PASS AC=2;AF=1.00;AN=2;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.64;SB=-1.931e+02;SOR=2.670;VQSLOD=6.82;culprit=FS GT:AD:DP:GQ:PL 1/1:0,26:26:72:903,72,0 3 14939479 rs2164356 G T 2711.77 PASS AC=2;AF=1.00;AN=2;DB;DP=85;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.90;SB=-1.179e+03;SOR=1.450;VQSLOD=6.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,85:85:99:2740,205,0 3 14939679 rs2307090 G A 1508.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.80;SB=-3.060e+02;SOR=2.985;VQSLOD=5.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1537,117,0 3 14942024 rs2307088 T C 2258.77 PASS AC=2;AF=1.00;AN=2;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.33;SB=-8.350e+02;SOR=2.043;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,77:77:99:2287,178,0 3 14942675 rs293906 G A 1380.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.52;SB=-1.503e+02;SOR=4.021;VQSLOD=6.92;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:99:1409,108,0 3 14949268 rs9818644 C T 1002.77 PASS AC=2;AF=1.00;AN=2;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.34;SB=-2.690e+02;SOR=2.448;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,32:32:75:1031,75,0 3 14960170 rs293916 T C 1682.77 PASS AC=2;AF=1.00;AN=2;DB;DP=48;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.44;SB=-2.450e+02;SOR=3.352;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,48:48:99:1711,126,0 3 14962165 rs13327251 G A 170.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.690;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=5.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.57;ReadPosRankSum=0.463;SB=-2.657e-01;SOR=2.419;VQSLOD=5.93;culprit=QD GT:AD:DP:GQ:PL 0/1:19,7:26:99:199,0,519 3 14962948 rs182398 T C 3300.77 PASS AC=2;AF=1.00;AN=2;DB;DP=107;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.85;SB=-1.864e+03;SOR=0.789;VQSLOD=5.20;culprit=FS GT:AD:DP:GQ:PL 1/1:0,107:107:99:3329,247,0 3 14964296 rs7644443 G A 147.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-1.242;SB=-3.401e+01;SOR=1.179;VQSLOD=9.94;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:176,0,102 3 14964821 rs1685637 C T 595.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.36;SB=-1.971e+02;SOR=1.981;VQSLOD=6.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:48:624,48,0 3 14965466 rs4685234 C T 3790.77 PASS AC=2;AF=1.00;AN=2;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.96;SB=-1.511e+03;SOR=1.609;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,115:115:99:3819,280,0 3 14965507 rs4685235 A G 4250.77 PASS AC=2;AF=1.00;AN=2;DB;DP=149;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;SB=-2.303e+03;SOR=1.194;VQSLOD=6.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,149:149:99:4279,322,0 3 15126086 rs618141 T C 504.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.17;SB=-4.176e+01;SOR=3.912;VQSLOD=8.43;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:533,39,0 3 15259865 rs826426 G A 711.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.56;SB=0.00;SOR=6.091;VQSLOD=8.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:740,60,0 3 15301363 rs2291853 G A 1821.77 PASS AC=2;AF=1.00;AN=2;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.60;SB=-1.201e+03;SOR=0.693;VQSLOD=6.36;culprit=FS GT:AD:DP:GQ:PL 1/1:0,66:66:99:1850,135,0 3 15311325 rs1287467 A G 2738.77 PASS AC=2;AF=1.00;AN=2;DB;DP=95;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.83;SB=-1.394e+03;SOR=1.167;VQSLOD=6.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,95:95:99:2767,199,0 3 15311464 rs1287468 G T 416.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.039;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=2.951;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=-0.301;SB=-8.800e+01;SOR=1.230;VQSLOD=7.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,18:36:99:445,0,532 3 15345924 rs9828229 G A 128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=2.112;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.78;ReadPosRankSum=0.550;SB=-2.501e+01;SOR=1.565;VQSLOD=5.62;culprit=QD GT:AD:DP:GQ:PL 0/1:12,7:19:99:157,0,301 3 15371819 rs3773464 C A 351.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.466;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=0.953;SB=-1.765e+00;SOR=1.493;VQSLOD=7.38;culprit=FS GT:AD:DP:GQ:PL 0/1:14,12:26:99:380,0,462 3 15417197 rs7640510 C T 122.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-0.120;SB=-6.100e+01;SOR=1.329;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:71:151,0,71 3 15425573 rs6805874 G A 267.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.001;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=6.362;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=0.321;SB=-5.100e+01;SOR=2.093;VQSLOD=6.19;culprit=FS GT:AD:DP:GQ:PL 0/1:16,11:27:99:296,0,402 3 15455717 rs2290537 A G 563.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.444;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=0.181;SB=-3.600e+01;SOR=0.892;VQSLOD=10.42;culprit=FS GT:AD:DP:GQ:PL 0/1:15,18:33:99:592,0,463 3 15456550 rs143794411 A AAAAC 678.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.14;RPA=5,6;RU=AAAC;ReadPosRankSum=0.205;SB=-1.080e+02;SOR=0.776;STR;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 0/1:8,14:33:99:716,0,376 3 15466373 rs73144111 T G 106.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.213;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.28;ReadPosRankSum=0.791;SB=-1.765e+00;SOR=0.693;VQSLOD=8.75;culprit=QD GT:AD:DP:GQ:PL 0/1:12,5:17:99:135,0,394 3 15473515 rs2290535 G A 627.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.112;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=-1.110;SB=-1.760e+02;SOR=0.593;VQSLOD=9.52;culprit=FS GT:AD:DP:GQ:PL 0/1:11,22:33:99:656,0,283 3 15476011 rs1563415 C G 1049.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.436;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.9992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=0.817;SB=-5.610e+02;SOR=0.776;VQSLOD=7.68;culprit=FS GT:AD:DP:GQ:PL 0/1:54,43:97:99:1078,0,1467 3 15498261 rs11128745 T C 602.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.320;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.927;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.27;ReadPosRankSum=-0.273;SB=-2.541e+02;SOR=0.166;VQSLOD=8.51;culprit=SOR GT:AD:DP:GQ:PL 0/1:8,25:33:99:631,0,233 3 15498272 rs12494919 G A 553.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.852;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=1.983;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=0.159;SB=-2.521e+02;SOR=0.252;VQSLOD=8.86;culprit=SOR GT:AD:DP:GQ:PL 0/1:7,21:28:99:582,0,166 3 15507761 rs3732722 G A 345.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=0.202;SB=-6.100e+01;SOR=1.148;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:12,12:24:99:374,0,295 3 15508160 rs66521607 T TCTGTC 578.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=26.71;ReadPosRankSum=-0.568;SB=0.00;SOR=1.179;VQSLOD=9.32;culprit=FS GT:AD:DP:GQ:PL 0/1:5,8:15:99:616,0,369 3 15509212 rs878946 T C 557.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.667;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=0.618;SB=-5.400e+01;SOR=0.404;VQSLOD=9.57;culprit=FS GT:AD:DP:GQ:PL 0/1:17,19:36:99:586,0,534 3 15509327 rs878945 C G 1787.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.751;DB;DP=145;Dels=0.00;ExcessHet=3.0103;FS=0.640;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=0.752;SB=-9.200e+02;SOR=0.603;VQSLOD=7.97;culprit=DP GT:AD:DP:GQ:PL 0/1:72,73:145:99:1816,0,1841 3 15515695 rs2305616 C T 789.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.403;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=1.012;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=-0.935;SB=-4.720e+02;SOR=0.507;VQSLOD=9.91;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:27,30:57:99:818,0,764 3 15515918 rs28632773 C G 164.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.013;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=3.854;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=0.440;SB=-4.276e+01;SOR=0.096;VQSLOD=9.27;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,7:17:99:193,0,358 3 15516481 rs924812 T C 595.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.523;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.990;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=0.286;SB=-3.260e+02;SOR=0.870;VQSLOD=7.51;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:36,25:61:99:624,0,907 3 15516910 rs3816526 T C 477.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.459;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.467;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=0.737;SB=-1.220e+02;SOR=1.577;VQSLOD=6.84;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,17:32:99:506,0,363 3 15517025 rs2305615 G A 700.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.835;DB;DP=66;Dels=0.00;ExcessHet=3.0103;FS=2.018;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-0.672;SB=-3.740e+02;SOR=0.866;VQSLOD=7.40;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:37,29:66:99:729,0,888 3 15518731 rs2305612 G C 651.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;DB;DP=73;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.93;ReadPosRankSum=-1.969;SB=-3.760e+02;SOR=0.650;VQSLOD=8.61;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:43,30:73:99:680,0,1064 3 15518841 rs13095087 G A 473.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=4.777;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=-0.027;SB=-3.150e+02;SOR=0.239;VQSLOD=9.99;culprit=FS GT:AD:DP:GQ:PL 0/1:19,21:40:99:502,0,533 3 15518889 rs13074638 T C 257.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.491;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=2.282;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.874;SB=-1.100e+02;SOR=0.223;VQSLOD=9.61;culprit=SOR GT:AD:DP:GQ:PL 0/1:9,11:20:99:286,0,259 3 15520244 rs909354 C T 800.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.219;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=-0.574;SB=-1.670e+02;SOR=0.606;VQSLOD=9.34;culprit=FS GT:AD:DP:GQ:PL 0/1:21,30:51:99:829,0,611 3 15520677 rs2255897 G T 579.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.907;DB;DP=63;Dels=0.00;ExcessHet=3.0103;FS=0.988;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.20;ReadPosRankSum=-0.721;SB=-3.370e+02;SOR=0.693;VQSLOD=6.80;culprit=QD GT:AD:DP:GQ:PL 0/1:40,23:63:99:608,0,1198 3 15529543 rs1983085 T C 362.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.85;ReadPosRankSum=0.664;SB=-9.700e+01;SOR=1.215;VQSLOD=9.10;culprit=QD GT:AD:DP:GQ:PL 0/1:26,15:41:99:391,0,777 3 15529555 . A G 385.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.974;DP=48;Dels=0.00;ExcessHet=3.0103;FS=1.295;HaplotypeScore=1.6647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.04;ReadPosRankSum=1.740;SB=-1.150e+02;SOR=1.102;VQSLOD=4.88;culprit=QD GT:AD:DP:GQ:PL 0/1:32,16:48:99:414,0,913 3 15539976 . C CCACACA 2693.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.97;RPA=8,11;RU=CA;ReadPosRankSum=1.010;SB=-6.250e+02;SOR=0.831;STR;VQSLOD=8.14;culprit=FS GT:AD:DP:GQ:PL 0/1:47,43:93:99:2731,0,3269 3 15610070 rs905650 C T 665.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.637;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=3.897;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=0.870;SB=-1.660e+02;SOR=1.308;VQSLOD=7.37;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:34,28:62:99:694,0,915 3 15613279 . T TA 199.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.89;RPA=13,14;RU=A;ReadPosRankSum=0.812;SB=-8.700e+01;SOR=0.465;STR;VQSLOD=8.07;culprit=QD GT:AD:DP:GQ:PL 0/1:16,13:31:99:237,0,263 3 15643043 rs2019160 A G 5570.77 PASS AC=2;AF=1.00;AN=2;DB;DP=170;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.77;SB=-2.945e+03;SOR=1.044;VQSLOD=6.28;culprit=DP GT:AD:DP:GQ:PL 1/1:0,170:170:99:5599,406,0 3 15717641 rs78957730 G A 844.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=1.165;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=-0.685;SB=-3.230e+02;SOR=1.071;VQSLOD=6.92;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:20,31:51:99:873,0,435 3 15717693 rs2246960 G A 277.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.726;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=-0.792;SB=-1.765e+00;SOR=1.244;VQSLOD=9.36;culprit=FS GT:AD:DP:GQ:PL 0/1:14,10:24:99:306,0,491 3 15718652 rs2470540 T A 493.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.952;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=0.415;SB=-3.400e+01;SOR=0.756;VQSLOD=9.87;culprit=FS GT:AD:DP:GQ:PL 0/1:16,17:33:99:522,0,509 3 15736385 rs2455814 A T 3075.77 PASS AC=2;AF=1.00;AN=2;DB;DP=97;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.71;SB=-1.566e+03;SOR=1.099;VQSLOD=6.56;culprit=FS GT:AD:DP:GQ:PL 1/1:0,97:97:99:3104,232,0 3 15737610 rs2470547 T C 467.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.452;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=4.335;HaplotypeScore=2.7897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=0.643;SB=-3.200e+02;SOR=0.280;VQSLOD=9.75;culprit=SOR GT:AD:DP:GQ:PL 0/1:26,20:46:99:496,0,643 3 15737689 rs2470548 G A 618.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;DB;DP=67;Dels=0.00;ExcessHet=3.0103;FS=3.371;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=-0.838;SB=-3.620e+02;SOR=0.787;VQSLOD=5.20;culprit=QD GT:AD:DP:GQ:PL 0/1:40,27:67:99:647,0,1021 3 15737698 rs2470549 T C 604.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.285;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=7.190;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=-0.357;SB=-2.220e+02;SOR=1.363;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 0/1:39,23:62:99:633,0,998 3 15752830 rs2455833 T C 221.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.853;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=4.084;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=0.580;SB=-1.760e+02;SOR=0.165;VQSLOD=9.94;culprit=SOR GT:AD:DP:GQ:PL 0/1:13,11:24:99:250,0,345 3 15753641 rs2455834 A G 783.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;DB;DP=59;Dels=0.00;ExcessHet=3.0103;FS=1.033;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-0.326;SB=-5.420e+02;SOR=0.437;VQSLOD=10.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:23,36:59:99:812,0,661 3 15756039 . G GA 119.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.46;MQ0=0;MQRankSum=-1.002;POSITIVE_TRAIN_SITE;QD=3.99;RPA=15,16;RU=A;ReadPosRankSum=1.435;SB=-4.900e+01;SOR=0.551;STR;VQSLOD=3.21;culprit=QD GT:AD:DP:GQ:PL 0/1:16,14:31:99:157,0,259 3 15756215 rs924754 A T 430.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.925;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=6.181;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=-1.767;SB=-2.430e+02;SOR=0.132;VQSLOD=8.90;culprit=FS GT:AD:DP:GQ:PL 0/1:14,19:33:99:459,0,353 3 15762696 rs78257767 C G 140.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.962;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-0.349;SB=0.00;SOR=0.551;VQSLOD=7.83;culprit=FS GT:AD:DP:GQ:PL 0/1:6,5:11:99:169,0,210 3 15807725 rs6789076 T A 1465.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.090;DB;DP=115;Dels=0.00;ExcessHet=3.0103;FS=3.624;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-0.797;SB=-5.080e+02;SOR=1.100;VQSLOD=7.69;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,57:115:99:1494,0,1515 3 15836723 . G GT 488.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;DP=38;ExcessHet=3.0103;FS=3.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.21;RPA=4,5;RU=T;ReadPosRankSum=0.882;SB=-2.300e+02;SOR=0.283;STR;VQSLOD=9.80;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,19:38:99:526,0,473 3 15900973 rs62243667 A C 415.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.785;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=5.701;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=-1.053;SB=-2.200e+02;SOR=0.157;VQSLOD=9.22;culprit=FS GT:AD:DP:GQ:PL 0/1:20,18:38:99:444,0,588 3 15901053 rs71064238 CT C 499.73 PASS AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.13;SB=-4.776e+01;SOR=3.611;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:13:36:537,36,0 3 15915154 rs10514667 C T 508.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.40;SB=0.00;SOR=5.421;VQSLOD=7.65;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:42:537,42,0 3 16263872 rs2292167 C A 448.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-0.991;SB=-6.900e+01;SOR=0.631;VQSLOD=10.22;culprit=FS GT:AD:DP:GQ:PL 0/1:17,16:33:99:477,0,504 3 16263920 rs2292168 G C 996.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.221;DB;DP=62;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=-0.396;SB=-1.780e+02;SOR=0.941;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:28,34:62:99:1025,0,832 3 16310857 rs842258 G A 954.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.83;SB=-1.593e+02;SOR=2.985;VQSLOD=6.80;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:31:75:983,75,0 3 16358584 rs690241 T C 1857.77 PASS AC=2;AF=1.00;AN=2;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.46;SB=-9.900e+02;SOR=0.865;VQSLOD=6.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,61:61:99:1886,141,0 3 16364919 rs690216 A C 1655.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.05;SB=-9.520e+02;SOR=0.877;VQSLOD=5.86;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1684,123,0 3 16368121 rs690145 T C 957.77 PASS AC=2;AF=1.00;AN=2;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.75;SB=-3.777e+01;SOR=5.058;VQSLOD=6.09;culprit=FS GT:AD:DP:GQ:PL 1/1:0,25:25:72:986,72,0 3 16399177 rs560032 G A 327.78 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.31;SB=-8.097e+01;SOR=2.670;VQSLOD=5.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:27:356,27,0 3 16535229 rs3815962 C T 343.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.561;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=7.1936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=0.335;SB=-5.700e+01;SOR=1.112;VQSLOD=9.99;culprit=FS GT:AD:DP:GQ:PL 0/1:17,13:31:99:372,0,531 3 16639834 . T C 226.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;DP=11;Dels=0.00;ExcessHet=3.0103;FS=3.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.62;ReadPosRankSum=-0.481;SB=-3.101e+01;SOR=2.093;VQSLOD=4.47;culprit=QD GT:AD:DP:GQ:PL 0/1:3,8:11:89:255,0,89 3 16640075 rs11710967 T C 335.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.058;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-1.198;SB=-1.720e+02;SOR=0.527;VQSLOD=9.72;culprit=FS GT:AD:DP:GQ:PL 0/1:12,13:25:99:364,0,315 3 16646745 rs9847342 C G 2581.77 PASS AC=2;AF=1.00;AN=2;DB;DP=89;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.01;SB=-1.642e+03;SOR=0.859;VQSLOD=6.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,89:89:99:2610,193,0 3 16679606 rs1025254 T C 344.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.48;SB=-4.276e+01;SOR=3.258;VQSLOD=8.13;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:373,27,0 3 16926607 rs7626448 T C 338.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.88;SB=-7.397e+01;SOR=2.303;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:367,27,0 3 16926642 rs6442655 A G 651.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.30;SB=-1.653e+02;SOR=2.419;VQSLOD=5.12;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:51:680,51,0 3 16926648 rs6442656 T G 697.77 PASS AC=2;AF=1.00;AN=2;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.23;SB=-2.011e+02;SOR=2.200;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,21:21:54:726,54,0 3 16926666 rs7626542 T G 943.77 PASS AC=2;AF=1.00;AN=2;DB;DP=29;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.54;SB=-3.290e+02;SOR=1.942;VQSLOD=5.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:29:72:972,72,0 3 16926766 rs148153072 C T 838.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;DB;DP=61;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=0.702;SB=-4.710e+02;SOR=0.582;VQSLOD=9.51;culprit=FS GT:AD:DP:GQ:PL 0/1:28,33:61:99:867,0,702 3 16927162 rs6795134 A C 394.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.920;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.37;ReadPosRankSum=1.604;SB=-8.297e+01;SOR=2.617;VQSLOD=6.39;culprit=FS GT:AD:DP:GQ:PL 1/1:1,12:13:30:423,30,0 3 16974610 rs9880307 C A 1816.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.32;SB=-8.370e+02;SOR=1.382;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1845,138,0 3 17051328 rs7653834 T C 557.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.460;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=-0.547;SB=-2.660e+02;SOR=0.765;VQSLOD=10.21;culprit=FS GT:AD:DP:GQ:PL 0/1:21,22:43:99:586,0,524 3 17051450 rs28932173 C A 921.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.106;DB;DP=77;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-0.443;SB=-3.900e+02;SOR=0.596;VQSLOD=9.31;culprit=FS GT:AD:DP:GQ:PL 0/1:44,33:77:99:950,0,1329 3 17053001 rs61751587 C T 1707.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;DB;DP=129;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=1.462;SB=-9.750e+02;SOR=0.732;VQSLOD=8.50;culprit=FS GT:AD:DP:GQ:PL 0/1:67,62:129:99:1736,0,1700 3 17053499 rs4602367 A G 2451.77 PASS AC=2;AF=1.00;AN=2;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8273;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=-1.422e+03;SOR=0.987;VQSLOD=6.79;culprit=FS GT:AD:DP:GQ:PL 1/1:0,83:83:99:2480,178,0 3 17077268 rs17272796 C T 1860.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.08;SB=-5.030e+02;SOR=2.468;VQSLOD=6.38;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1889,141,0 3 17208267 rs1138454 T C 706.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=1.172;SB=-3.900e+02;SOR=0.836;VQSLOD=8.05;culprit=FS GT:AD:DP:GQ:PL 0/1:35,33:68:99:735,0,980 3 17209153 rs56166267 G C 428.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.825;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=1.267;SB=-6.500e+01;SOR=1.440;VQSLOD=9.04;culprit=FS GT:AD:DP:GQ:PL 0/1:16,15:31:99:457,0,410 3 17209195 rs2305291 G A 707.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=2.561;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-0.936;SB=-2.130e+02;SOR=1.204;VQSLOD=7.38;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,28:54:99:736,0,629 3 17275173 rs2060628 G C 965.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.722;DB;DP=60;Dels=0.00;ExcessHet=3.0103;FS=3.753;HaplotypeScore=1.9466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=0.061;SB=-3.770e+02;SOR=1.324;VQSLOD=6.71;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:26,33:60:99:994,0,692 3 17279526 rs2060629 T C 654.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=35.91;SB=0.00;SOR=4.407;VQSLOD=7.58;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:683,51,0 3 17300133 rs2596647 A C 607.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.316;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=3.047;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=0.551;SB=-7.097e+01;SOR=0.146;VQSLOD=8.82;culprit=SOR GT:AD:DP:GQ:PL 0/1:15,20:35:99:636,0,483 3 17413531 rs35196536 A AAAACAAACAAAC,AAAACAAACAAACAAAC 3839.73 PASS AC=1,1;AF=0.500,0.500;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.65;RPA=4,7,8;RU=AAAC;SB=-1.842e+02;SOR=5.136;STR;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 1/2:0,17,9:30:99:3877,514,436,912,0,834 3 17425738 rs921052 A G 796.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.69;SB=-1.015e+02;SOR=3.258;VQSLOD=6.30;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:60:825,60,0 3 17446278 rs199763399 A AAC 1302.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.71;RPA=5,6;RU=AC;ReadPosRankSum=0.282;SB=-5.450e+02;SOR=0.634;STR;VQSLOD=7.76;culprit=FS GT:AD:DP:GQ:PL 0/1:27,33:64:99:1340,0,965 3 17470114 rs2121262 C T 1518.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.13;SB=-9.870e+02;SOR=0.767;VQSLOD=5.99;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1547,114,0 3 17470217 rs56757867 C T 223.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.335;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.657;HaplotypeScore=1.8279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.22;ReadPosRankSum=0.330;SB=-1.300e+02;SOR=0.307;VQSLOD=8.88;culprit=QD GT:AD:DP:GQ:PL 0/1:20,11:31:99:252,0,569 3 17549897 rs73153072 C T 982.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.690;DB;DP=79;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.495;SB=-4.360e+02;SOR=0.846;VQSLOD=8.19;culprit=FS GT:AD:DP:GQ:PL 0/1:39,40:79:99:1011,0,993 3 17549954 rs73153073 T C 1693.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.680;DB;DP=121;Dels=0.00;ExcessHet=3.0103;FS=2.409;HaplotypeScore=3.5846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.428;SB=-7.490e+02;SOR=0.994;VQSLOD=7.45;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:58,63:121:99:1722,0,1524 3 17918879 rs71634814 CT C 154.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.89;RPA=8,7;RU=T;ReadPosRankSum=0.984;SB=0.00;SOR=1.445;STR;VQSLOD=8.94;culprit=FS GT:AD:DP:GQ:PL 0/1:4,8:12:85:192,0,85 3 18055231 rs61978649 A C 1769.77 PASS AC=2;AF=1.00;AN=2;DB;DP=58;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-7.470e+02;SOR=1.609;VQSLOD=6.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,58:58:99:1798,138,0 3 18057982 rs9310538 A G 391.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.73;SB=-3.777e+01;SOR=3.442;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:420,30,0 3 18058059 rs9310539 A G 646.77 PASS AC=2;AF=1.00;AN=2;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.12;SB=-3.660e+02;SOR=1.179;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,23:23:48:675,48,0 3 18058093 rs62240226 C G 817.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.21;SB=-5.670e+02;SOR=0.693;VQSLOD=5.90;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:60:846,60,0 3 18308436 rs7432753 A G 2102.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.86;SB=-6.910e+02;SOR=2.093;VQSLOD=7.34;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2131,154,0 3 18419553 rs9310557 C T 1325.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.99;SB=-1.313e+02;SOR=3.967;VQSLOD=7.24;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:99:1354,105,0 3 18419859 rs10460976 G A 1402.77 PASS AC=2;AF=1.00;AN=2;DB;DP=46;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.49;SB=-5.370e+02;SOR=1.609;VQSLOD=7.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,46:46:99:1431,105,0 3 18427924 rs2229261 G T 1490.77 PASS AC=2;AF=1.00;AN=2;DB;DP=44;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.88;SB=-2.001e+02;SOR=3.816;VQSLOD=7.31;culprit=FS GT:AD:DP:GQ:PL 1/1:0,44:44:99:1519,120,0 3 19436587 rs10470642 T C 251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.524;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=1.846;SB=-9.732e-01;SOR=1.329;VQSLOD=8.70;culprit=FS GT:AD:DP:GQ:PL 0/1:19,9:28:99:280,0,615 3 19436814 rs368261431 A G 1088.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.202;DB;DP=91;Dels=0.00;ExcessHet=3.0103;FS=4.133;HaplotypeScore=1.8801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.96;ReadPosRankSum=-0.167;SB=-4.350e+02;SOR=1.157;VQSLOD=5.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,43:91:99:1117,0,1114 3 19551491 rs35082901 AG A 179.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQ0=0;MQRankSum=0.776;POSITIVE_TRAIN_SITE;QD=11.23;RPA=2,1;RU=G;ReadPosRankSum=-0.879;SB=0.00;SOR=0.495;STR;VQSLOD=3.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:9,7:16:99:217,0,360 3 19556990 rs56353870 AT A 189.25 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.073;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.77;RPA=13,12;RU=T;ReadPosRankSum=-0.290;SB=-2.777e+01;SOR=2.147;STR;VQSLOD=7.95;culprit=FS GT:AD:DP:GQ:PL 1/1:1,11:15:9:226,9,0 3 19924372 rs66604076 A AC 209.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=0.622;SB=0.00;SOR=0.569;VQSLOD=9.96;culprit=FS GT:AD:DP:GQ:PL 0/1:7,6:14:99:247,0,210 3 19925807 rs9882578 A G 190.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.505;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=0.209;SB=-3.777e+01;SOR=0.223;VQSLOD=9.34;culprit=FS GT:AD:DP:GQ:PL 0/1:6,7:13:99:219,0,160 3 19930130 rs76305623 A T 838.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=1.081;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-0.596;SB=-4.250e+02;SOR=0.954;VQSLOD=7.31;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:22,34:56:99:867,0,554 3 19941074 rs2931386 A G 1237.77 PASS AC=2;AF=1.00;AN=2;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.74;SB=-4.950e+02;SOR=1.730;VQSLOD=6.83;culprit=FS GT:AD:DP:GQ:PL 1/1:0,39:39:90:1266,90,0 3 19946992 rs2931394 G A 408.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.06;SB=-3.577e+01;SOR=3.611;VQSLOD=7.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:437,33,0 3 19947296 rs2929377 T C 254.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.98;ReadPosRankSum=-0.803;SB=-1.765e+00;SOR=2.494;VQSLOD=6.21;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,9:15:99:283,0,194 3 19959756 rs2929366 G A 1805.77 PASS AC=2;AF=1.00;AN=2;DB;DP=69;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=26.17;SB=-1.065e+03;SOR=0.844;VQSLOD=6.03;culprit=FS GT:AD:DP:GQ:PL 1/1:0,69:69:99:1834,135,0 3 19961330 rs2931403 C T 1872.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.81;SB=-7.720e+02;SOR=1.758;VQSLOD=7.17;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:1901,138,0 3 19961331 . T C 697.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.291;DP=68;Dels=0.00;ExcessHet=3.0103;FS=1.014;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=10.26;ReadPosRankSum=0.688;SB=-2.140e+02;SOR=0.958;VQSLOD=5.99;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:39,29:68:99:726,0,948 3 19961562 rs73819048 C T 80.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.73;ReadPosRankSum=0.817;SB=0.00;SOR=0.269;VQSLOD=9.01;culprit=QD GT:AD:DP:GQ:PL 0/1:8,4:12:99:109,0,293 3 19962044 rs13078867 G A 1024.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.050;DB;DP=118;Dels=0.00;ExcessHet=3.0103;FS=0.710;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.68;ReadPosRankSum=-0.243;SB=-6.240e+02;SOR=0.667;VQSLOD=8.79;culprit=QD GT:AD:DP:GQ:PL 0/1:75,43:118:99:1053,0,1993 3 19962199 rs2931404 G C 598.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.517;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=6.1823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=-0.244;SB=-2.402e+01;SOR=1.255;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:12,19:31:99:627,0,366 3 19962223 rs13079262 G A 220.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.874;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=1.377;SB=0.00;SOR=0.346;VQSLOD=9.44;culprit=FS GT:AD:DP:GQ:PL 0/1:13,8:21:99:249,0,425 3 19974700 rs2929350 T C 1803.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.40;SB=-4.740e+02;SOR=2.303;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1832,135,0 3 19975215 rs17795400 C A 1322.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.451;DB;DP=125;Dels=0.00;ExcessHet=3.0103;FS=4.313;HaplotypeScore=3.4329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=1.221;SB=-7.490e+02;SOR=0.699;VQSLOD=4.80;culprit=FS GT:AD:DP:GQ:PL 0/1:71,54:125:99:1351,0,1856 3 19975582 rs2929349 A G 355.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.34;SB=-4.376e+01;SOR=3.442;VQSLOD=8.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:30:384,30,0 3 19977483 rs63114260 AGAGT A 808.73 PASS AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.54;SB=0.00;SOR=5.136;VQSLOD=8.19;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:36:846,36,0 3 19992432 rs6773437 G T 1748.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.23;SB=-5.390e+02;SOR=2.221;VQSLOD=6.76;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1777,129,0 3 20025665 rs66744034 G GGA 1060.73 PASS AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.54;MQ0=0;QD=32.93;SB=-2.891e+02;SOR=2.093;VQSLOD=5.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:60:1098,60,0 3 20053581 rs2686326 C T 1799.77 PASS AC=2;AF=1.00;AN=2;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.69;SB=-9.580e+02;SOR=1.162;VQSLOD=6.23;culprit=FS GT:AD:DP:GQ:PL 1/1:0,65:65:99:1828,129,0 3 20053735 rs2686325 G A 910.77 PASS AC=2;AF=1.00;AN=2;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.53;SB=-2.231e+02;SOR=2.468;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,28:28:69:939,69,0 3 20113830 rs3021408 G A 1652.77 PASS AC=2;AF=1.00;AN=2;DB;DP=53;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.18;SB=-6.250e+02;SOR=1.791;VQSLOD=7.20;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,53:53:99:1681,126,0 3 20113989 rs3749180 C A 3624.77 PASS AC=2;AF=1.00;AN=2;DB;DP=123;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.47;SB=-2.286e+03;SOR=0.812;VQSLOD=6.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,123:123:99:3653,271,0 3 20114044 rs3828349 T C 3094.77 PASS AC=2;AF=1.00;AN=2;DB;DP=103;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.05;SB=-1.623e+03;SOR=1.179;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,103:103:99:3123,238,0 3 20114048 rs3828348 G A 3097.77 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.67;SB=-1.334e+03;SOR=1.247;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:3126,235,0 3 20136611 rs2293140 C T 681.77 PASS AC=2;AF=1.00;AN=2;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.09;SB=-3.976e+01;SOR=4.615;VQSLOD=7.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,20:20:54:710,54,0 3 20136645 rs2293141 A T 1232.77 PASS AC=2;AF=1.00;AN=2;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.7077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.24;SB=-1.841e+02;SOR=3.383;VQSLOD=7.47;culprit=FS GT:AD:DP:GQ:PL 1/1:0,36:36:96:1261,96,0 3 20136683 rs2293142 T G 1723.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.24;SB=-4.880e+02;SOR=2.428;VQSLOD=7.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1752,138,0 3 20141522 rs13323791 A G 956.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.18;SB=-6.480e+02;SOR=0.914;VQSLOD=5.27;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:69:985,69,0 3 20142360 rs4858764 T C 415.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.68;SB=0.00;SOR=4.977;VQSLOD=8.52;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:444,33,0 3 20143020 rs4858155 G C 1726.77 PASS AC=2;AF=1.00;AN=2;DB;DP=50;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.54;SB=-3.140e+02;SOR=3.171;VQSLOD=6.02;culprit=FS GT:AD:DP:GQ:PL 1/1:0,50:50:99:1755,126,0 3 20156302 rs2365794 T C 546.77 PASS AC=2;AF=1.00;AN=2;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.16;SB=-1.135e+02;SOR=2.712;VQSLOD=7.87;culprit=FS GT:AD:DP:GQ:PL 1/1:0,17:17:42:575,42,0 3 20179033 . C CT 1874.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.712;DP=99;ExcessHet=3.0103;FS=2.154;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=0.293;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.35;RPA=12,13;RU=T;ReadPosRankSum=0.632;SB=-6.950e+02;SOR=1.516;STR;VQSLOD=0.347;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:4,73:99:99:1912,157,0 3 20179097 rs6787734 C T 1572.77 PASS AC=2;AF=1.00;AN=2;DB;DP=49;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-2.331e+02;SOR=3.398;VQSLOD=5.77;culprit=FS GT:AD:DP:GQ:PL 1/1:0,49:49:99:1601,129,0 3 20181615 rs3762632 G T 516.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.18;SB=0.00;SOR=5.421;VQSLOD=8.74;culprit=SOR GT:AD:DP:GQ:PL 1/1:0,14:14:42:545,42,0 3 20181676 rs3762633 T C 1241.77 PASS AC=2;AF=1.00;AN=2;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.63;SB=-1.245e+02;SOR=4.112;VQSLOD=5.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,33:33:93:1270,93,0 3 20188074 rs2686314 C T 296.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.68;SB=-7.697e+01;SOR=2.303;VQSLOD=7.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:24:325,24,0 3 20212189 rs1052930 A G 555.77 PASS AC=2;AF=1.00;AN=2;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.25;SB=-1.523e+02;SOR=2.419;VQSLOD=6.54;culprit=FS GT:AD:DP:GQ:PL 1/1:0,19:19:45:584,45,0 3 20216519 rs61729306 T A 461.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.013;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-0.396;SB=-1.280e+02;SOR=0.527;VQSLOD=9.83;culprit=FS GT:AD:DP:GQ:PL 0/1:17,18:35:99:490,0,514 3 20219694 rs6550401 T G 718.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.67;SB=-1.613e+02;SOR=2.737;VQSLOD=6.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:54:747,54,0 3 20219885 rs6550402 C T 2119.77 PASS AC=2;AF=1.00;AN=2;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.89;SB=-1.276e+03;SOR=0.859;VQSLOD=6.06;culprit=FS GT:AD:DP:GQ:PL 1/1:0,76:76:99:2148,160,0 3 20225071 rs17006703 A G 533.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.353;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=5.348;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=0.262;SB=-8.900e+01;SOR=1.708;VQSLOD=6.07;culprit=FS GT:AD:DP:GQ:PL 0/1:22,19:41:99:562,0,531 3 20657469 rs4858238 G A 238.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.558;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=-0.856;SB=-1.400e+02;SOR=0.760;VQSLOD=9.79;culprit=FS GT:AD:DP:GQ:PL 0/1:3,11:14:58:267,0,58 3 21447492 rs4857993 G A 1237.77 PASS AC=2;AF=1.00;AN=2;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.79;SB=-4.020e+02;SOR=1.609;VQSLOD=7.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,43:43:93:1266,93,0 3 21447525 rs366161 G A 1667.77 PASS AC=2;AF=1.00;AN=2;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.32;SB=-7.590e+02;SOR=1.487;VQSLOD=6.57;culprit=FS GT:AD:DP:GQ:PL 1/1:0,55:55:99:1696,123,0 3 21447724 rs11718548 C T 1784.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.05;SB=-1.015e+03;SOR=0.767;VQSLOD=6.94;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1813,138,0 3 21447799 rs430387 T C 2333.77 PASS AC=2;AF=1.00;AN=2;DB;DP=64;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=36.03;SB=-9.460e+02;SOR=1.306;VQSLOD=4.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,64:64:99:2362,175,0 3 21447834 rs440905 C T 2748.77 PASS AC=2;AF=1.00;AN=2;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.79;SB=-8.680e+02;SOR=1.996;VQSLOD=7.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,79:80:99:2777,205,0 3 21447896 rs800605 A G 4183.77 PASS AC=2;AF=1.00;AN=2;DB;DP=141;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.8933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.67;SB=-2.110e+03;SOR=1.313;VQSLOD=5.45;culprit=FS GT:AD:DP:GQ:PL 1/1:0,141:141:99:4212,316,0 3 21448035 rs72625843 C A 5299.77 PASS AC=2;AF=1.00;AN=2;DB;DP=184;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.80;SB=-2.756e+03;SOR=1.255;VQSLOD=5.85;culprit=DP GT:AD:DP:GQ:PL 1/1:0,184:184:99:5328,382,0 3 21448245 rs920120 C T 320.78 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.6797;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.68;SB=-1.115e+02;SOR=1.609;VQSLOD=4.78;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:27:349,27,0 3 21462754 rs451242 A G 2601.77 PASS AC=2;AF=1.00;AN=2;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.3669;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.25;SB=-1.067e+03;SOR=1.721;VQSLOD=6.50;culprit=FS GT:AD:DP:GQ:PL 1/1:0,86:87:99:2630,202,0 3 21462787 rs427233 G A 3201.82 PASS AC=2;AF=1.00;AN=2;DB;DP=101;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.70;SB=-1.759e+03;SOR=0.979;VQSLOD=6.18;culprit=FS GT:AD:DP:GQ:PL 1/1:0,101:101:99:3231,238,0 3 22423338 rs4472062 G C 413.77 PASS AC=2;AF=1.00;AN=2;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=34.48;SB=-4.276e+01;SOR=3.611;VQSLOD=6.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,12:12:33:442,33,0 3 23175905 rs4530552 T A 313.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.53;SB=-1.483e+02;SOR=1.270;VQSLOD=6.25;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:342,27,0 3 23364883 rs9844558 G A 370.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=1.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-1.655;SB=-5.900e+01;SOR=1.483;VQSLOD=6.58;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,13:30:99:399,0,464 3 24006477 rs4858097 T A 2319.77 PASS AC=2;AF=1.00;AN=2;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.22;SB=-5.790e+02;SOR=2.649;VQSLOD=6.93;culprit=FS GT:AD:DP:GQ:PL 1/1:0,72:72:99:2348,178,0 3 24169361 rs1667765 T C 1033.77 PASS AC=2;AF=1.00;AN=2;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.46;SB=0.00;SOR=6.869;VQSLOD=7.21;culprit=FS GT:AD:DP:GQ:PL 1/1:0,30:30:87:1062,87,0 3 24562877 rs11714172 G T 1261.77 PASS AC=2;AF=1.00;AN=2;DB;DP=40;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=31.54;SB=-6.680e+02;SOR=1.022;VQSLOD=6.66;culprit=FS GT:AD:DP:GQ:PL 1/1:0,40:40:96:1290,96,0 3 24563021 rs74928881 G C 332.78 PASS AC=2;AF=1.00;AN=2;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.28;SB=-3.777e+01;SOR=3.258;VQSLOD=6.74;culprit=FS GT:AD:DP:GQ:PL 1/1:0,10:10:27:361,27,0 3 24597622 . A G 66.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.802;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-1.442;SB=-4.600e+01;SOR=0.582;VQSLOD=7.10;culprit=QD GT:AD:DP:GQ:PL 0/1:8,5:13:95:95,0,189 3 25775356 rs6550987 A C 906.77 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.923;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=25.91;ReadPosRankSum=-0.545;SB=-4.220e+02;SOR=1.447;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 1/1:1,34:35:69:935,69,0 3 25805390 rs2101477 C T 476.77 PASS AC=2;AF=1.00;AN=2;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.23;SB=0.00;SOR=5.283;VQSLOD=6.95;culprit=FS GT:AD:DP:GQ:PL 1/1:0,13:13:39:505,39,0 3 25805879 rs11129208 T C 753.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.26;SB=0.00;SOR=6.273;VQSLOD=9.53;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:66:782,66,0 3 25836023 rs9831075 C T 1796.77 PASS AC=2;AF=1.00;AN=2;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.09;SB=-4.400e+02;SOR=2.387;VQSLOD=7.28;culprit=FS GT:AD:DP:GQ:PL 1/1:0,56:56:99:1825,135,0 3 25836088 rs9834955 C A 479.77 PASS AC=2;AF=1.00;AN=2;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.27;SB=0.00;SOR=5.421;VQSLOD=9.40;culprit=FS GT:AD:DP:GQ:PL 1/1:0,14:14:39:508,39,0 3 25902401 rs4681082 G C 311.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.34;SB=-1.643e+02;SOR=1.270;VQSLOD=6.00;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:24:340,24,0 3 25904394 rs6550999 T C 512.77 PASS AC=2;AF=1.00;AN=2;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.05;SB=-1.205e+02;SOR=2.584;VQSLOD=5.70;culprit=FS GT:AD:DP:GQ:PL 1/1:0,16:16:42:541,42,0 3 27046879 rs2370904 G A 336.78 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.62;SB=-1.623e+02;SOR=1.270;VQSLOD=6.51;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:27:365,27,0 3 27047502 rs1839022 T C 232.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=1.707;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.12;ReadPosRankSum=1.649;SB=-9.000e+01;SOR=1.112;VQSLOD=6.68;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:15,8:23:99:261,0,395 3 27184801 rs10865812 T A 324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.340;DB;DP=28;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=2.974;SB=-1.765e+00;SOR=1.292;VQSLOD=8.03;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:16,12:28:99:353,0,483 3 27203864 rs62255210 C T 215.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=6.767;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=-2.346;SB=-1.075e+02;SOR=0.033;VQSLOD=8.42;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:10,10:20:99:244,0,337 3 27204052 rs17854381 G A 797.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.382;DB;DP=80;Dels=0.00;ExcessHet=3.0103;FS=1.799;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=0.840;SB=-5.450e+02;SOR=0.822;VQSLOD=7.26;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,37:80:99:826,0,1202 3 27233376 rs11926580 G T 347.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.843;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.30;ReadPosRankSum=-0.372;SB=0.00;SOR=1.022;VQSLOD=9.82;culprit=FS GT:AD:DP:GQ:PL 0/1:8,11:19:99:376,0,271 3 27233498 rs11926556 C A 1225.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.414;DB;DP=94;Dels=0.00;ExcessHet=3.0103;FS=0.828;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-1.311;SB=-4.310e+02;SOR=0.803;VQSLOD=7.89;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:50,44:94:99:1254,0,1344 3 27243045 rs17680166 G C 912.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.843;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=1.787;HaplotypeScore=3.7429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=1.181;SB=-5.930e+02;SOR=0.462;VQSLOD=9.12;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:51,36:87:99:941,0,1384 3 27243119 rs17680194 G A 706.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.447;DB;DP=55;Dels=0.00;ExcessHet=3.0103;FS=1.170;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=0.884;SB=-2.570e+02;SOR=0.390;VQSLOD=9.55;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,27:55:99:735,0,810 3 27243871 rs34940413 T C 2015.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.843;DB;DP=122;Dels=0.00;ExcessHet=3.0103;FS=6.208;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=-0.884;SB=-1.069e+03;SOR=0.329;VQSLOD=8.07;culprit=FS GT:AD:DP:GQ:PL 0/1:45,77:122:99:2044,0,1126 3 27294507 rs2166214 A T 973.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.968;DB;DP=71;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.479;SB=-9.500e+01;SOR=0.555;VQSLOD=9.58;culprit=FS GT:AD:DP:GQ:PL 0/1:38,33:71:99:1002,0,1118 3 27296796 rs1550769 C G 707.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;DB;DP=41;Dels=0.00;ExcessHet=3.0103;FS=1.374;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.26;ReadPosRankSum=-0.450;SB=-2.870e+02;SOR=0.375;VQSLOD=9.54;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:17,24:41:99:736,0,482 3 27296822 rs1550768 A T 655.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.082;DB;DP=37;Dels=0.00;ExcessHet=3.0103;FS=1.488;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=-1.817;SB=-2.470e+02;SOR=0.407;VQSLOD=9.54;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:14,23:37:99:684,0,380 3 27297684 rs12494667 C A 239.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;DB;DP=30;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.99;ReadPosRankSum=1.088;SB=-1.765e+00;SOR=0.646;VQSLOD=9.14;culprit=QD GT:AD:DP:GQ:PL 0/1:21,9:30:99:268,0,668 3 27297816 rs3213930 G C 865.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.184;DB;DP=111;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.5657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.80;ReadPosRankSum=1.307;SB=-5.310e+02;SOR=0.743;VQSLOD=7.45;culprit=QD GT:AD:DP:GQ:PL 0/1:72,39:111:99:894,0,1732 3 27326097 rs11129280 G T 222.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.043;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=1.971;HaplotypeScore=1.9937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=0.690;SB=-1.360e+02;SOR=0.207;VQSLOD=9.64;culprit=SOR GT:AD:DP:GQ:PL 0/1:11,11:22:99:251,0,299 3 27326451 rs10510594 A G 450.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=0.381;SB=-2.070e+02;SOR=0.859;VQSLOD=10.10;culprit=FS GT:AD:DP:GQ:PL 0/1:18,20:38:99:479,0,395 3 27332282 rs62255594 C T 94.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;DB;DP=13;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.29;ReadPosRankSum=-0.706;SB=-3.300e+01;SOR=0.330;VQSLOD=9.28;culprit=QD GT:AD:DP:GQ:PL 0/1:8,5:13:99:123,0,258 3 27332820 rs10510592 A G 879.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;DB;DP=72;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.6918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=-1.427;SB=-5.220e+02;SOR=0.608;VQSLOD=9.47;culprit=FS GT:AD:DP:GQ:PL 0/1:38,34:72:99:908,0,1081 3 27335350 rs633157 A T 224.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;DB;DP=12;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.73;ReadPosRankSum=-0.435;SB=-8.197e+01;SOR=0.368;VQSLOD=9.27;culprit=FS GT:AD:DP:GQ:PL 0/1:3,9:12:91:253,0,91 3 27338424 rs4973870 C A 339.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=0.000;SB=0.00;SOR=1.292;VQSLOD=10.20;culprit=FS GT:AD:DP:GQ:PL 0/1:7,12:19:99:368,0,228 3 27350384 rs77257134 G T 658.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.650;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=1.062;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-0.424;SB=-2.700e+02;SOR=0.892;VQSLOD=7.35;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:28,26:54:99:687,0,729 3 27353716 rs552647 C A 650.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.874;DB;DP=51;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=5.0878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=2.059;SB=-2.410e+02;SOR=0.660;VQSLOD=9.46;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:24,27:51:99:679,0,630 3 27363637 . T TA 329.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;DP=39;ExcessHet=3.0103;FS=3.536;MLEAC=1;MLEAF=0.500;MQ=60.28;MQ0=0;MQRankSum=1.056;POSITIVE_TRAIN_SITE;QD=9.16;RPA=11,12;RU=A;ReadPosRankSum=0.222;SB=-6.500e+01;SOR=1.730;STR;VQSLOD=0.047;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:18,18:39:99:367,0,313 3 27387463 rs2370957 C G 449.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=70.00;MQ0=0;QD=29.98;SB=-1.125e+02;SOR=2.448;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:36:478,36,0 3 27387463 . C CTAAA 1027.73 PASS AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=70.00;MQ0=0;QD=34.24;SB=-2.055e+02;SOR=2.448;VQSLOD=5.89;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:1065,45,0 3 27394419 rs12494966 T G 749.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.398;DB;DP=65;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=0.152;SB=-2.380e+02;SOR=0.821;VQSLOD=8.19;culprit=FS GT:AD:DP:GQ:PL 0/1:36,29:65:99:778,0,1071 3 27424718 rs1472256 A G 7322.77 PASS AC=2;AF=1.00;AN=2;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=3.5999;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=29.29;SB=-3.940e+03;SOR=0.981;VQSLOD=4.71;culprit=DP GT:AD:DP:GQ:PL 1/1:0,250:250:99:7351,539,0 3 27427616 rs17630711 A G 233.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=0.823;SB=-3.677e+01;SOR=0.184;VQSLOD=8.71;culprit=FS GT:AD:DP:GQ:PL 0/1:9,9:18:99:262,0,287 3 27432995 rs2307032 T C 484.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.351;DB;DP=23;Dels=0.00;ExcessHet=3.0103;FS=2.682;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=21.08;ReadPosRankSum=1.121;SB=-1.255e+02;SOR=0.252;VQSLOD=9.05;culprit=SOR GT:AD:DP:GQ:PL 0/1:6,17:23:99:513,0,168 3 27433397 rs2307035 A T 60.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=6.08;ReadPosRankSum=1.465;SB=-3.300e+01;SOR=0.368;VQSLOD=8.93;culprit=QD GT:AD:DP:GQ:PL 0/1:6,4:10:89:89,0,203 3 27444524 rs1967131 G C 175.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;DB;DP=10;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=-1.465;SB=0.00;SOR=1.085;VQSLOD=9.64;culprit=FS GT:AD:DP:GQ:PL 0/1:4,6:10:99:204,0,136 3 27478797 rs3732608 G A 229.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.910;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=1.546;SB=0.00;SOR=0.392;VQSLOD=9.48;culprit=FS GT:AD:DP:GQ:PL 0/1:12,8:20:99:258,0,376 3 27494620 rs12639265 A T 53.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=4.89;ReadPosRankSum=-2.093;SB=0.00;SOR=0.180;VQSLOD=8.74;culprit=QD GT:AD:DP:GQ:PL 0/1:8,3:11:82:82,0,235 3 27759338 rs9866625 C A 952.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.138;DB;DP=78;Dels=0.04;ExcessHet=3.0103;FS=2.675;HaplotypeScore=10.3432;MLEAC=1;MLEAF=0.500;MQ=60.12;MQ0=0;MQRankSum=-0.532;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=0.398;SB=-1.460e+02;SOR=2.038;VQSLOD=0.020;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:40,35:75:99:981,0,1114 3 27763427 rs3062761 G GCGGCGC 398.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;DB;DP=13;ExcessHet=3.0103;FS=5.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=1.597;SB=-7.600e+01;SOR=1.901;VQSLOD=5.68;culprit=FS GT:AD:DP:GQ:PL 0/1:8,5:13:99:436,0,543 3 28358057 rs11706332 C T 268.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.550;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=1.290;SB=-3.300e+01;SOR=0.941;VQSLOD=10.19;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:297,0,240 3 28373154 rs13081520 T G 213.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.43;ReadPosRankSum=-1.299;SB=0.00;SOR=1.270;VQSLOD=9.97;culprit=FS GT:AD:DP:GQ:PL 0/1:4,7:11:99:242,0,119 3 28373462 . C CA 460.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=8.86;RPA=9,10;RU=A;ReadPosRankSum=0.658;SB=-4.100e+01;SOR=0.986;STR;VQSLOD=6.38;culprit=QD GT:AD:DP:GQ:PL 0/1:30,22:61:99:498,0,644 3 28381887 rs3762797 A T 367.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.237;DB;DP=25;Dels=0.00;ExcessHet=3.0103;FS=4.925;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=0.000;SB=-2.004e+01;SOR=2.049;VQSLOD=5.85;culprit=FS GT:AD:DP:GQ:PL 0/1:12,13:25:99:396,0,337 3 28520417 rs1563656 T A 227.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;DB;DP=32;Dels=0.00;ExcessHet=3.0103;FS=3.304;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.12;ReadPosRankSum=-1.873;SB=-8.100e+01;SOR=1.352;VQSLOD=6.09;culprit=QD GT:AD:DP:GQ:PL 0/1:22,10:32:99:256,0,585 3 28533458 rs13099814 A G 275.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.811;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=1.117;SB=-7.000e+01;SOR=0.412;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:15,11:26:99:304,0,413 3 28552310 rs6777813 A T 411.77 PASS AC=2;AF=1.00;AN=2;DB;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.66;SB=0.00;SOR=4.977;VQSLOD=8.73;culprit=FS GT:AD:DP:GQ:PL 1/1:0,11:11:33:440,33,0 3 28557206 rs10539083 CTG CTGTG,C 938.73 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.977;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=30.28;RPA=15,16,14;RU=TG;ReadPosRankSum=-0.845;SB=-3.801e+01;SOR=3.193;STR;VQSLOD=4.54;culprit=FS GT:AD:DP:GQ:PL 1/2:2,9,20:50:99:976,713,1099,279,0,452 3 28557236 rs7617655 G A 620.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.376;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=1.666;SB=-3.976e+01;SOR=1.402;VQSLOD=8.00;culprit=FS GT:AD:DP:GQ:PL 0/1:12,21:33:99:649,0,346 3 29129732 rs13074941 T C 403.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.689;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=3.176;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=0.703;SB=-1.640e+02;SOR=1.387;VQSLOD=7.09;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,17:33:99:432,0,360 3 29476428 rs3773018 G A 181.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.640;DB;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=1.021;SB=-1.020e+02;SOR=0.693;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:10,10:20:99:210,0,288 3 29781465 . C CA 160.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQ0=0;MQRankSum=0.956;POSITIVE_TRAIN_SITE;QD=9.45;RPA=16,17;RU=A;ReadPosRankSum=0.196;SB=0.00;SOR=1.061;STR;VQSLOD=3.44;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:7,10:22:99:198,0,116 3 29804300 rs7340719 C A 211.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;DB;DP=17;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=1.234;SB=0.00;SOR=0.593;VQSLOD=9.62;culprit=FS GT:AD:DP:GQ:PL 0/1:9,8:17:99:240,0,298 3 29804487 rs1371839 A T 997.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.020;DB;DP=92;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=-0.685;SB=-6.740e+02;SOR=0.623;VQSLOD=9.02;culprit=FS GT:AD:DP:GQ:PL 0/1:49,43:92:99:1026,0,1259 3 29804509 rs1371840 T C 920.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;DB;DP=87;Dels=0.00;ExcessHet=3.0103;FS=0.822;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-0.608;SB=-5.800e+02;SOR=0.549;VQSLOD=9.19;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:49,38:87:99:949,0,1271 3 29922333 rs13324314 C T 1255.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.436;DB;DP=104;Dels=0.00;ExcessHet=3.0103;FS=2.869;HaplotypeScore=4.7114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=-0.522;SB=-5.120e+02;SOR=0.438;VQSLOD=9.77;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:56,48:104:99:1284,0,1469 3 29925518 rs2218724 A G 324.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.787;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=1.416;SB=0.00;SOR=0.560;VQSLOD=9.93;culprit=FS GT:AD:DP:GQ:PL 0/1:14,12:26:99:353,0,466 3 29977739 rs1449287 T C 2713.77 PASS AC=2;AF=1.00;AN=2;DB;DP=82;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.09;SB=-1.081e+03;SOR=1.609;VQSLOD=5.81;culprit=FS GT:AD:DP:GQ:PL 1/1:0,82:82:99:2742,199,0 3 29985934 rs35921382 G A 327.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.729;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=7.375;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=18.21;ReadPosRankSum=0.978;SB=-9.732e-01;SOR=3.145;VQSLOD=5.40;culprit=FS GT:AD:DP:GQ:PL 0/1:8,10:18:99:356,0,197 3 30045458 . T G 570.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.267;DP=50;Dels=0.00;ExcessHet=3.0103;FS=1.178;HaplotypeScore=3.6272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-1.778;SB=-2.790e+02;SOR=0.452;VQSLOD=7.98;culprit=ReadPosRankSum GT:AD:DP:GQ:PL 0/1:26,24:50:99:599,0,708 3 30686414 rs1155705 A G 921.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.779;DB;DP=83;Dels=0.00;ExcessHet=3.0103;FS=2.068;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=0.125;SB=-3.380e+02;SOR=0.429;VQSLOD=9.98;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:48,35:83:99:950,0,1418 3 30769931 rs12054099 G A 470.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.861;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=3.023;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=-0.370;SB=-8.097e+01;SOR=0.160;VQSLOD=9.80;culprit=SOR GT:AD:DP:GQ:PL 0/1:11,16:27:99:499,0,347 3 30819831 rs3043043 ACT A 445.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;DB;DP=24;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.38;RPA=2,1;RU=CT;ReadPosRankSum=0.616;SB=-8.200e+01;SOR=0.269;STR;VQSLOD=9.32;culprit=SOR GT:AD:DP:GQ:PL 0/1:12,11:24:99:483,0,552 3 30827904 rs6550024 A G 375.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.567;DB;DP=31;Dels=0.00;ExcessHet=3.0103;FS=1.412;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=0.870;SB=-2.350e+02;SOR=0.414;VQSLOD=9.83;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:16,15:31:99:404,0,364 3 30842336 . CACACACAGAA C 967.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.239;DP=17;ExcessHet=3.0103;FS=6.021;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=18.14;ReadPosRankSum=0.435;SB=-1.632e+02;SOR=2.381;VQSLOD=4.55;culprit=FS GT:AD:DP:GQ:PL 1/1:1,15:17:42:1005,42,0 3 30842346 rs10553550 AAGAG A 903.73 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=62.41;MQ0=0;MQRankSum=0.693;POSITIVE_TRAIN_SITE;QD=33.89;RPA=13,11;RU=AG;ReadPosRankSum=-1.304;SB=-1.993e+02;SOR=1.270;STR;VQSLOD=3.33;culprit=MQRankSum GT:AD:DP:GQ:PL 1/1:1,19:22:55:941,55,0 3 30842597 . A AT 1039.73 PASS AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=25.23;RPA=2,3;RU=T;SB=-1.165e+02;SOR=3.841;STR;VQSLOD=3.11;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:33:87:1077,87,0 3 30885806 rs1494738 T C 676.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.386;DB;DP=56;Dels=0.00;ExcessHet=3.0103;FS=2.332;HaplotypeScore=2.8129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.871;SB=-2.680e+02;SOR=1.055;VQSLOD=7.85;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:30,25:56:99:705,0,756 3 30935761 rs6794058 A G 355.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.707;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=19.76;ReadPosRankSum=0.543;SB=-1.720e+02;SOR=0.818;VQSLOD=9.70;culprit=FS GT:AD:DP:GQ:PL 0/1:5,13:18:89:384,0,89 3 31223300 rs9839077 G A 308.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;DB;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=0.195;SB=-2.090e+02;SOR=0.489;VQSLOD=9.81;culprit=FS GT:AD:DP:GQ:PL 0/1:12,15:27:99:337,0,275 3 31494587 rs17027714 G A 1871.77 PASS AC=2;AF=1.00;AN=2;DB;DP=57;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.84;SB=-7.100e+02;SOR=1.569;VQSLOD=6.64;culprit=FS GT:AD:DP:GQ:PL 1/1:0,57:57:99:1900,144,0 3 31494993 rs9824199 C T 1878.77 PASS AC=2;AF=1.00;AN=2;DB;DP=54;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.79;SB=-5.690e+02;SOR=1.981;VQSLOD=6.44;culprit=FS GT:AD:DP:GQ:PL 1/1:0,54:54:99:1907,147,0 3 31495219 rs11708946 C A 600.77 PASS AC=2;AF=1.00;AN=2;DB;DP=22;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.31;SB=-3.190e+02;SOR=1.329;VQSLOD=5.91;culprit=FS GT:AD:DP:GQ:PL 1/1:0,22:22:45:629,45,0 3 31621228 rs67101101 T TAAA 958.73 PASS AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=28.54;SB=0.00;SOR=5.549;VQSLOD=8.37;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:45:996,45,0 3 31642037 rs11713598 A T 120.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.979;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=2.580;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.03;ReadPosRankSum=-0.668;SB=-6.700e+01;SOR=0.132;VQSLOD=7.61;culprit=QD GT:AD:DP:GQ:PL 0/1:17,7:24:99:149,0,518 3 31663515 rs66468423 A AGTGTG 2388.73 PASS AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=30.51;SB=-1.670e+02;SOR=4.479;VQSLOD=6.71;culprit=FS GT:AD:DP:GQ:PL 1/1:0,29:30:87:2426,87,0 3 31666256 rs3214835 CT C 173.74 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=15.79;RPA=10,9;RU=T;ReadPosRankSum=-0.660;SB=0.00;SOR=2.494;STR;VQSLOD=6.20;culprit=FS GT:AD:DP:GQ:PL 0/1:2,9:11:27:211,0,27 3 31703464 rs11058 T C 482.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.862;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=0.162;SB=-1.090e+02;SOR=0.446;VQSLOD=10.37;culprit=FS GT:AD:DP:GQ:PL 0/1:16,17:33:99:511,0,467 3 31712176 rs3749406 G T 868.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.094;DB;DP=68;Dels=0.00;ExcessHet=3.0103;FS=4.354;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-0.270;SB=-1.580e+02;SOR=1.662;VQSLOD=5.76;culprit=FS GT:AD:DP:GQ:PL 0/1:33,35:68:99:897,0,958 3 31712393 rs3749405 C T 2251.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;DB;DP=214;Dels=0.00;ExcessHet=3.0103;FS=5.942;HaplotypeScore=4.6126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=0.907;SB=-9.190e+02;SOR=1.110;VQSLOD=5.37;culprit=DP GT:AD:DP:GQ:PL 0/1:122,92:214:99:2280,0,3021 3 31725310 rs143777503 G A 3128.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-11.281;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.966;HaplotypeScore=4.7559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.773;SB=-1.733e+03;SOR=0.767;VQSLOD=5.27;culprit=DP GT:AD:DP:GQ:PL 0/1:135,115:250:99:3157,0,3918 3 31725316 rs2278959 G A 3180.76 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;DB;DP=250;Dels=0.00;ExcessHet=3.0103;FS=0.968;HaplotypeScore=4.7559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.417;SB=-1.773e+03;SOR=0.770;VQSLOD=5.88;culprit=DP GT:AD:DP:GQ:PL 0/1:136,114:250:99:3209,0,3876 3 31725691 rs2278960 T C 1297.77 PASS AC=2;AF=1.00;AN=2;DB;DP=38;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=34.15;SB=-3.250e+02;SOR=2.554;VQSLOD=7.41;culprit=FS GT:AD:DP:GQ:PL 1/1:0,38:38:96:1326,96,0 3 31725746 rs12488137 C A 527.77 PASS AC=2;AF=1.00;AN=2;DB;DP=15;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=24.78;SB=-4.176e+01;SOR=4.047;VQSLOD=6.63;culprit=FS GT:AD:DP:GQ:PL 1/1:0,15:15:42:556,42,0 3 31789582 rs2290532 T C 427.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.125;DB;DP=43;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=-1.109;SB=-2.580e+02;SOR=0.828;VQSLOD=8.48;culprit=FS GT:AD:DP:GQ:PL 0/1:25,18:43:99:456,0,655 3 31789724 rs2290533 C T 369.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.762;DB;DP=26;Dels=0.00;ExcessHet=3.0103;FS=3.769;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=0.449;SB=-1.970e+02;SOR=0.242;VQSLOD=10.30;culprit=SOR GT:AD:DP:GQ:PL 0/1:10,16:26:99:398,0,253 3 31839135 rs7653447 A G 32.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.827;DB;DP=16;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=2.05;ReadPosRankSum=0.338;SB=0.00;SOR=0.078;VQSLOD=9.48;culprit=QD GT:AD:DP:GQ:PL 0/1:13,3:16:61:61,0,456 3 31839242 rs7643025 T C 755.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.266;DB;DP=106;Dels=0.00;ExcessHet=3.0103;FS=3.230;HaplotypeScore=5.9197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.13;ReadPosRankSum=-0.396;SB=-1.720e+02;SOR=1.288;VQSLOD=5.93;culprit=QD GT:AD:DP:GQ:PL 0/1:74,32:106:99:784,0,1876 3 32188006 rs9839702 G A 577.77 PASS AC=2;AF=1.00;AN=2;DB;DP=18;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.10;SB=-4.176e+01;SOR=4.407;VQSLOD=7.10;culprit=FS GT:AD:DP:GQ:PL 1/1:0,18:18:51:606,51,0 3 32200233 rs2305362 G A 390.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.167;DB;DP=47;Dels=0.00;ExcessHet=3.0103;FS=1.234;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=8.31;ReadPosRankSum=-1.393;SB=-1.370e+02;SOR=0.990;VQSLOD=6.42;culprit=QD GT:AD:DP:GQ:PL 0/1:31,16:47:99:419,0,864 3 32200322 rs2305361 T C 1177.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.263;DB;DP=93;Dels=0.00;ExcessHet=3.0103;FS=9.515;HaplotypeScore=4.4694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=1.834;SB=-2.400e+02;SOR=1.755;VQSLOD=4.88;culprit=FS GT:AD:DP:GQ:PL 0/1:50,43:93:99:1206,0,1307 3 32200972 . A G 43.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;DP=20;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.9151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.30;ReadPosRankSum=0.050;SB=0.00;SOR=0.093;VQSLOD=7.81;culprit=QD GT:AD:DP:GQ:PL 0/1:15,4:20:72:72,0,423 3 32200973 rs59329824 G A 113.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;DB;DP=21;Dels=0.00;ExcessHet=3.0103;FS=4.523;HaplotypeScore=2.9151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=5.42;ReadPosRankSum=-0.156;SB=-3.677e+01;SOR=0.035;VQSLOD=6.86;culprit=QD GT:AD:DP:GQ:PL 0/1:15,6:21:99:142,0,350 3 32207606 rs6799559 A G 736.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.953;DB;DP=36;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=0.357;SB=0.00;SOR=1.209;VQSLOD=9.60;culprit=FS GT:AD:DP:GQ:PL 0/1:14,22:36:99:765,0,429 3 32301106 rs4245883 C T 781.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=32.57;SB=-3.050e+02;SOR=1.519;VQSLOD=6.46;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:63:810,63,0 3 32301217 rs4245884 A C 193.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.239;DB;DP=35;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=5.54;ReadPosRankSum=1.286;SB=-1.580e+02;SOR=0.582;VQSLOD=8.75;culprit=QD GT:AD:DP:GQ:PL 0/1:23,12:35:99:222,0,684 3 32301274 rs34009828 T A 653.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;DB;DP=39;Dels=0.00;ExcessHet=3.0103;FS=4.977;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=1.133;SB=-4.190e+02;SOR=0.223;VQSLOD=9.18;culprit=FS GT:AD:DP:GQ:PL 0/1:13,26:39:99:682,0,319 3 32301352 . T C 196.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.681;DP=27;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=1.8319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=7.29;ReadPosRankSum=-0.567;SB=-6.000e+01;SOR=0.446;VQSLOD=8.08;culprit=QD GT:AD:DP:GQ:PL 0/1:18,9:27:99:225,0,545 3 32301422 . C A 221.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;DP=11;Dels=0.00;ExcessHet=3.0103;FS=8.195;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=20.16;ReadPosRankSum=1.083;SB=-3.100e+01;SOR=2.800;VQSLOD=4.10;culprit=FS GT:AD:DP:GQ:PL 0/1:3,8:11:92:250,0,92 3 32301595 rs4245885 A G 192.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;DB;DP=14;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=2.4551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.690;SB=-1.090e+02;SOR=0.593;VQSLOD=9.78;culprit=FS GT:AD:DP:GQ:PL 0/1:6,8:14:99:221,0,135 3 32493682 rs342745 A G 884.77 PASS AC=2;AF=1.00;AN=2;DB;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;POSITIVE_TRAIN_SITE;QD=27.23;SB=-3.570e+02;SOR=1.270;VQSLOD=5.22;culprit=FS GT:AD:DP:GQ:PL 1/1:0,24:24:69:913,69,0 3 32571823 rs35467710 GA G 69.73 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;DB;DP=35;ExcessHet=3.0103;FS=6.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.49;RPA=17,16;RU=A;ReadPosRankSum=-0.148;SB=-1.417e+01;SOR=1.236;STR;VQSLOD=3.69;culprit=QD GT:AD:DP:GQ:PL 0/1:19,9:35:99:107,0,407 3 32586521 rs138677120 C T 746.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;DB;DP=76;Dels=0.00;ExcessHet=3.0103;FS=0.876;HaplotypeScore=3.7734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=-0.792;SB=-5.210e+02;SOR=0.541;VQSLOD=9.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:43,33:76:99:775,0,1083 3 32662531 rs6550143 T C 246.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.969;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=1.637;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.48;ReadPosRankSum=-0.039;SB=-5.100e+01;SOR=1.096;VQSLOD=6.83;culprit=QD GT:AD:DP:GQ:PL 0/1:23,10:33:99:275,0,746 3 32662546 rs75300952 T C 259.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.421;DB;DP=33;Dels=0.00;ExcessHet=3.0103;FS=5.862;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=7.87;ReadPosRankSum=-1.349;SB=-1.417e+01;SOR=1.880;VQSLOD=5.29;culprit=QD GT:AD:DP:GQ:PL 0/1:21,12:33:99:288,0,642 3 32662803 . C A 106.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.37;MQ0=0;MQRankSum=-1.335;QD=9.71;ReadPosRankSum=0.352;SB=-6.400e+01;SOR=0.495;VQSLOD=2.03;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,5:11:99:135,0,175 3 32662807 . T C 113.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;DP=11;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=57.37;MQ0=0;MQRankSum=-1.335;QD=10.34;ReadPosRankSum=0.888;SB=-7.100e+01;SOR=0.495;VQSLOD=1.52;culprit=MQRankSum GT:AD:DP:GQ:PL 0/1:6,5:11:99:142,0,177 3 32662919 rs34045705 C T 61.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.172;DB;DP=19;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;POSITIVE_TRAIN_SITE;QD=3.25;ReadPosRankSum=-1.947;SB=-4.300e+01;SOR=1.022;VQSLOD=7.88;culprit=QD GT:AD:DP:GQ:PL 0/1:14,5:19:90:90,0,313 3 32662960 . A G 155.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.404;DP=24;Dels=0.00;ExcessHet=3.0103;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=6.49;ReadPosRankSum=0.159;SB=-8.900e+01;SOR=0.602;VQSLOD=7.66;culprit=QD GT:AD:DP:GQ:PL 0/1:17,7:24:99:184,0,469 3 32662966 rs111943089 A C 165.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.082;DB;DP=24;Dels=0.00;ExcessHet=3.0103