##fileformat=VCFv4.1 ##samtoolsVersion=0.1.18 (r982:295) ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT UDP_2570 chr1 69511 . A G 222 . DP=33;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,19,11;MQ=27;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 762273 . G A 110 . DP=73;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,33,7,29;MQ=51;FQ=113;PV4=0.31,4.1e-32,5.8e-07,1 GT:PL:GQ 0/1:140,0,255:99 chr1 782981 . C T 16.1 . DP=3;VDB=0.0182;AF1=0.5006;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-3.56;PV4=1,0.21,1,0.37 GT:PL:GQ 0/1:46,0,26:29 chr1 792263 . A G 187 . DP=34;VDB=0.0399;AF1=1;AC1=2;DP4=1,0,29,4;MQ=28;FQ=-112;PV4=1,0.18,1,1 GT:PL:GQ 1/1:220,85,0:99 chr1 792480 . C T 222 . DP=42;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,12,27;MQ=45;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 866319 . G A 86 . DP=8;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,6,2;MQ=57;FQ=-51 GT:PL:GQ 1/1:119,24,0:45 chr1 871334 . G T 31 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:63,9,0:16 chr1 876499 . A G 30.3 . DP=8;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:63,15,0:27 chr1 877831 . T C 93.1 . DP=7;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,3,4;MQ=60;FQ=-48 GT:PL:GQ 1/1:126,21,0:39 chr1 880238 . A G 222 . DP=68;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,34,33;MQ=59;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr1 881627 . G A 62 . DP=24;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,2,8,6;MQ=60;FQ=65;PV4=0.65,6.8e-08,1,1 GT:PL:GQ 0/1:92,0,147:95 chr1 882033 . G A 11.3 . DP=15;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,8,0,7;MQ=60;FQ=14.2;PV4=1,1.2e-09,1,1 GT:PL:GQ 0/1:41,0,151:43 chr1 883625 . A G 164 . DP=29;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,14;MQ=58;FQ=-105 GT:PL:GQ 1/1:197,78,0:99 chr1 884091 . C G 72 . DP=54;VDB=0.0019;AF1=0.5;AC1=1;DP4=5,29,1,19;MQ=48;FQ=75;PV4=0.39,9e-11,1,1 GT:PL:GQ 0/1:102,0,246:99 chr1 884101 . A C 34 . DP=47;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,19,2,23;MQ=45;FQ=37;PV4=1,4.1e-24,0.031,0.0044 GT:PL:GQ 0/1:64,0,170:67 chr1 886788 . G A 64 . DP=21;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,17;MQ=60;FQ=-78 GT:PL:GQ 1/1:97,51,0:99 chr1 886817 . C T 24.5 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:57,12,0:21 chr1 887560 . A C 167 . DP=51;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,18,28;MQ=60;FQ=-165 GT:PL:GQ 1/1:200,138,0:99 chr1 887801 . A G 126 . DP=22;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,17,4;MQ=58;FQ=-90 GT:PL:GQ 1/1:159,63,0:99 chr1 888639 . T C 196 . DP=71;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,32,34;MQ=56;FQ=-226 GT:PL:GQ 1/1:229,199,0:99 chr1 888659 . T C 222 . DP=72;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,34,37;MQ=56;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr1 889638 . G C 5.29 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:35,6,0:6 chr1 892745 . G A 174 . DP=23;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,7,16;MQ=59;FQ=-96 GT:PL:GQ 1/1:207,69,0:99 chr1 894573 . G A 203 . DP=35;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,30;MQ=59;FQ=-132 GT:PL:GQ 1/1:236,105,0:99 chr1 897325 . G C 222 . DP=115;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,46,65;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 897564 . T C 157 . DP=63;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,42,19;MQ=59;FQ=-211 GT:PL:GQ 1/1:190,184,0:99 chr1 898323 . T C 191 . DP=47;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,18,25;MQ=59;FQ=-156 GT:PL:GQ 1/1:224,129,0:99 chr1 899928 . G C 85 . DP=13;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,1,10;MQ=50;FQ=-60 GT:PL:GQ 1/1:118,33,0:63 chr1 899942 . G A 71.1 . DP=7;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,6;MQ=48;FQ=-48 GT:PL:GQ 1/1:104,21,0:39 chr1 900505 . G C 183 . DP=47;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,12,12,17;MQ=60;FQ=186;PV4=0.53,7.9e-07,1,0.28 GT:PL:GQ 0/1:213,0,231:99 chr1 906272 . A C 95 . DP=30;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,7,10,9;MQ=60;FQ=98;PV4=0.43,2.4e-09,1,1 GT:PL:GQ 0/1:125,0,166:99 chr1 909073 . C T 61.1 . DP=7;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:94,21,0:39 chr1 909238 . G C 35.5 . DP=4;VDB=0.0095;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:68,12,0:21 chr1 909768 . A G 186 . DP=66;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,35;MQ=59;FQ=-220 GT:PL:GQ 1/1:219,193,0:99 chr1 911595 . A G 222 . DP=18;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,7,8;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr1 912049 . T C 222 . DP=24;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,2,18;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr1 912103 . G A 24 . DP=4;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:56,9,0:15 chr1 912125 . cg c 24.2 . INDEL;DP=2;VDB=0.0157;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:63,6,0:10 chr1 914192 . G C 37 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:69,9,0:16 chr1 914333 . C G 163 . DP=21;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,14,5;MQ=59;FQ=-84 GT:PL:GQ 1/1:196,57,0:99 chr1 914852 . G C 222 . DP=34;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,13;MQ=59;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr1 914876 . T C 222 . DP=44;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,30,14;MQ=59;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 914940 . T C 222 . DP=85;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,58,27;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 915227 . A G 222 . DP=40;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,24;MQ=59;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 916549 . A G 222 . DP=105;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,68,36;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 935222 . C A 61 . DP=8;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:94,24,0:45 chr1 948846 . TA TAA 157 . INDEL;DP=12;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-70.5 GT:PL:GQ 1/1:198,36,0:69 chr1 948870 . C G 137 . DP=24;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,18,5;MQ=59;FQ=-96 GT:PL:GQ 1/1:170,69,0:99 chr1 948921 . T C 222 . DP=46;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,30,13;MQ=59;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 949654 . A G 222 . DP=74;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,34,36;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr1 949925 . C T 190 . DP=33;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,6,25;MQ=60;FQ=-120 GT:PL:GQ 1/1:223,93,0:99 chr1 976514 . C A 15.9 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:47,6,0:10 chr1 977330 . T C 127 . DP=17;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,14,3;MQ=59;FQ=-78 GT:PL:GQ 1/1:160,51,0:99 chr1 977570 . G A 97 . DP=18;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,2,13;MQ=60;FQ=-72 GT:PL:GQ 1/1:130,45,0:87 chr1 978603 . CCT C 214 . INDEL;DP=19;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,18,1;MQ=60;FQ=-91.5 GT:PL:GQ 1/1:255,57,0:99 chr1 981087 . A G 222 . DP=90;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,36,48;MQ=59;FQ=-280 GT:PL:GQ 1/1:255,253,0:99 chr1 981931 . A G 222 . DP=54;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,28,19;MQ=59;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 982941 . T C 185 . DP=79;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,36,36;MQ=60;FQ=-244 GT:PL:GQ 1/1:218,217,0:99 chr1 982994 . T C 173 . DP=84;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,29,54;MQ=59;FQ=-277 GT:PL:GQ 1/1:206,250,0:99 chr1 984171 . CAG C 109 . INDEL;DP=9;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,4;MQ=43;FQ=-49.5 GT:PL:GQ 1/1:149,15,0:27 chr1 984302 . T C 71.3 . DP=6;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,3,2;MQ=55;FQ=-42 GT:PL:GQ 1/1:104,15,0:27 chr1 985266 . C T 193 . DP=29;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,12,16;MQ=60;FQ=-111 GT:PL:GQ 1/1:226,84,0:99 chr1 986443 . C T 222 . DP=59;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,23,33;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 986732 . G A 140 . DP=27;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,7,5,10;MQ=60;FQ=143;PV4=1,0.00012,1,1 GT:PL:GQ 0/1:170,0,182:99 chr1 987200 . C T 222 . DP=36;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,15,20;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 988932 . G C 108 . DP=16;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,10;MQ=60;FQ=-66 GT:PL:GQ 1/1:141,39,0:75 chr1 990280 . C T 142 . DP=6;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-45 GT:PL:GQ 1/1:175,18,0:33 chr1 990517 . C T 13.9 . DP=2;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr1 1007203 . A G 64 . DP=3;VDB=0.0189;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:96,9,0:16 chr1 1007432 . G A 222 . DP=21;VDB=0.0298;AF1=1;AC1=2;DP4=1,0,8,11;MQ=58;FQ=-58;PV4=0.45,0.33,1,0.23 GT:PL:GQ 1/1:255,31,0:59 chr1 1018144 . T C 32 . DP=3;VDB=0.0211;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:64,9,0:16 chr1 1019175 . C G 77.5 . DP=4;VDB=0.0236;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:110,12,0:21 chr1 1019180 . T C 35.5 . DP=4;VDB=0.0236;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:68,12,0:21 chr1 1021415 . A G 63.3 . DP=5;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:96,15,0:27 chr1 1026707 . C A 24 . DP=16;VDB=0.0042;AF1=0.5;AC1=1;DP4=6,2,5,1;MQ=60;FQ=27;PV4=1,2.2e-08,1,0.27 GT:PL:GQ 0/1:54,0,190:57 chr1 1026801 . T A 225 . DP=36;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,10,7,12;MQ=60;FQ=225;PV4=1,0.22,1,0.16 GT:PL:GQ 0/1:255,0,255:99 chr1 1103150 . G A 70 . DP=8;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:103,24,0:45 chr1 1120307 . G A 106 . DP=40;VDB=0.0066;AF1=0.5;AC1=1;DP4=20,3,13,4;MQ=52;FQ=109;PV4=0.43,5.5e-14,1,1 GT:PL:GQ 0/1:136,0,248:99 chr1 1158631 . A G 222 . DP=41;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,31,9;MQ=59;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 1196863 . T C 86.5 . DP=5;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:119,12,0:21 chr1 1220899 . C T 45 . DP=8;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,1,3,2;MQ=60;FQ=39.4;PV4=1,0.033,1,1 GT:PL:GQ 0/1:75,0,67:69 chr1 1221236 . A T 33 . DP=3;VDB=0.0086;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:65,9,0:16 chr1 1225571 . C T 10.4 . DP=8;VDB=0.0110;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=54;FQ=13.2;PV4=1,0.00012,1,0.058 GT:PL:GQ 0/1:40,0,87:42 chr1 1225576 . T C 12.3 . DP=10;VDB=0.0081;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=55;FQ=15.1;PV4=1,1.9e-05,1,0.05 GT:PL:GQ 0/1:42,0,87:44 chr1 1225612 . G A 190 . DP=19;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,0,10,3;MQ=55;FQ=52;PV4=0.52,1,0.45,1 GT:PL:GQ 0/1:220,0,79:82 chr1 1229680 . G T 222 . DP=54;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,28,24;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 1239339 . T G 128 . DP=30;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,27,3;MQ=58;FQ=-117 GT:PL:GQ 1/1:161,90,0:99 chr1 1242707 . A G 206 . DP=82;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,22,55;MQ=59;FQ=-259 GT:PL:GQ 1/1:239,232,0:99 chr1 1245368 . G A 86 . DP=11;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,10;MQ=58;FQ=-60 GT:PL:GQ 1/1:119,33,0:63 chr1 1246004 . A G 222 . DP=37;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,20;MQ=60;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 1246831 . G A 154 . DP=48;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,15,13,8;MQ=60;FQ=157;PV4=0.26,2e-15,1,1 GT:PL:GQ 0/1:184,0,255:99 chr1 1247494 . T C 174 . DP=15;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,11;MQ=60;FQ=-72 GT:PL:GQ 1/1:207,45,0:87 chr1 1247943 . ACCCTGCCCTGCCCTGCCC ACCCTGCCCTGCCCTGCCCTGCCCTGCCC 41.5 . INDEL;DP=19;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,1,5,0;MQ=51;FQ=44.5;PV4=1,1,0.00082,0.034 GT:PL:GQ 0/1:79,0,246:82 chr1 1249187 . G A 204 . DP=138;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,65,65;MQ=59;FQ=-282 GT:PL:GQ 1/1:237,255,0:99 chr1 1254136 . G A 167 . DP=32;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,26,4;MQ=60;FQ=-117 GT:PL:GQ 1/1:200,90,0:99 chr1 1254436 . A G 222 . DP=92;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,39,51;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 1254443 . G A 222 . DP=93;VDB=0.0399;AF1=1;AC1=2;DP4=1,0,36,51;MQ=59;FQ=-253;PV4=0.42,1.2e-07,0.43,0.23 GT:PL:GQ 1/1:255,226,0:99 chr1 1254841 . C G 137 . DP=39;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,10,19;MQ=60;FQ=-114 GT:PL:GQ 1/1:170,87,0:99 chr1 1262591 . C T 222 . DP=27;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,19,5;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 1262966 . C T 222 . DP=36;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,20,13;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 1263144 . G A 169 . DP=32;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,8,19;MQ=60;FQ=-108 GT:PL:GQ 1/1:202,81,0:99 chr1 1266738 . G A 225 . DP=83;VDB=0.0216;AF1=0.5;AC1=1;DP4=31,7,32,12;MQ=59;FQ=225;PV4=0.43,8.7e-10,0.33,1 GT:PL:GQ 0/1:255,0,255:99 chr1 1266740 . T A 225 . DP=85;VDB=0.0244;AF1=0.5;AC1=1;DP4=32,7,32,12;MQ=59;FQ=225;PV4=0.43,5.4e-09,0.32,1 GT:PL:GQ 0/1:255,0,255:99 chr1 1268847 . T G 197 . DP=94;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,45,48;MQ=60;FQ=-282 GT:PL:GQ 1/1:230,255,0:99 chr1 1269554 . T C 222 . DP=57;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,39,17;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 1273116 . A G 222 . DP=43;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,20;MQ=60;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 1273278 . A G 70.3 . DP=6;VDB=0.0241;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:103,15,0:27 chr1 1275291 . G A 109 . DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:142,21,0:39 chr1 1276973 . GACACA GACACACACA 214 . INDEL;DP=113;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,79,31;MQ=54;FQ=-290 GT:PL:GQ 1/1:255,255,0:99 chr1 1277533 . T C 113 . DP=28;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,1,24;MQ=60;FQ=-102 GT:PL:GQ 1/1:146,75,0:99 chr1 1278237 . T C 183 . DP=27;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,27;MQ=59;FQ=-108 GT:PL:GQ 1/1:216,81,0:99 chr1 1284490 . G A 79 . DP=11;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:112,33,0:63 chr1 1288583 . C G 129 . DP=32;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,12,8;MQ=60;FQ=-87 GT:PL:GQ 1/1:162,60,0:99 chr1 1289367 . CTG C 214 . INDEL;DP=36;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,25,11;MQ=60;FQ=-143 GT:PL:GQ 1/1:255,108,0:99 chr1 1289911 . G A 96 . DP=14;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,2,10;MQ=60;FQ=-63 GT:PL:GQ 1/1:129,36,0:69 chr1 1293764 . G C 148 . DP=39;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,31,5;MQ=59;FQ=-135 GT:PL:GQ 1/1:181,108,0:99 chr1 1296691 . C G 222 . DP=59;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,15,41;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 1309942 . C T 89 . DP=43;VDB=0.0298;AF1=0.5;AC1=1;DP4=18,7,9,7;MQ=60;FQ=92;PV4=0.33,3.8e-11,1,1 GT:PL:GQ 0/1:119,0,255:99 chr1 1310074 . C G 172 . DP=42;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,9,28;MQ=59;FQ=-138 GT:PL:GQ 1/1:205,111,0:99 chr1 1323078 . A G 66 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:98,9,0:16 chr1 1323143 . CCT C 214 . INDEL;DP=17;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,12,5;MQ=60;FQ=-85.5 GT:PL:GQ 1/1:255,51,0:99 chr1 1354538 . G A 225 . DP=83;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,16,20,23;MQ=60;FQ=225;PV4=0.38,0.23,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 1361530 . C T 18.1 . DP=4;VDB=0.0145;AF1=0.5;AC1=1;DP4=1,1,0,2;MQ=60;FQ=19.9;PV4=1,1,1,1 GT:PL:GQ 0/1:48,0,53:50 chr1 1387667 . C G 176 . DP=142;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,62,73;MQ=60;FQ=-282 GT:PL:GQ 1/1:209,255,0:99 chr1 1403814 . C T 194 . DP=33;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,11,9,4;MQ=59;FQ=197;PV4=0.28,1,0.037,1 GT:PL:GQ 0/1:224,0,255:99 chr1 1403972 . CGG CGGG 103 . INDEL;DP=12;VDB=0.0305;AF1=0.5;AC1=1;DP4=1,3,2,4;MQ=38;FQ=28.5;PV4=1,1,1,0.1 GT:PL:GQ 0/1:141,0,63:66 chr1 1404001 . G T 49 . DP=8;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,2,1,4;MQ=48;FQ=43.4;PV4=1,0.0019,1,0.21 GT:PL:GQ 0/1:79,0,71:73 chr1 1417696 . C G 49.3 . DP=5;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,4;MQ=22;FQ=-42 GT:PL:GQ 1/1:82,15,0:27 chr1 1417782 . A G 17.1 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,2,1;MQ=18;FQ=-36 GT:PL:GQ 1/1:49,9,0:15 chr1 1418004 . T C 28 . DP=20;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,5,7,0;MQ=51;FQ=31;PV4=0.11,6.2e-07,1.3e-11,1 GT:PL:GQ 0/1:58,0,255:61 chr1 1421531 . C A 116 . DP=65;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,19,18,14;MQ=60;FQ=119;PV4=0.32,1.7e-27,1,1 GT:PL:GQ 0/1:146,0,255:99 chr1 1421991 . G A 32 . DP=11;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=29;FQ=34;PV4=1,0.00096,1,0.28 GT:PL:GQ 0/1:62,0,68:64 chr1 1423267 . A G 81 . DP=40;VDB=0.0393;AF1=0.5;AC1=1;DP4=22,0,16,1;MQ=58;FQ=84;PV4=0.44,6.5e-11,0.021,0.27 GT:PL:GQ 0/1:111,0,180:99 chr1 1425700 . T C 191 . DP=78;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,12,23,23;MQ=59;FQ=194;PV4=0.48,9.3e-23,1,0.035 GT:PL:GQ 0/1:221,0,255:99 chr1 1425816 . G A 225 . DP=83;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,23,16,26;MQ=59;FQ=225;PV4=1,0.011,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 1430780 . C A 37 . DP=11;VDB=0.0066;AF1=0.5;AC1=1;DP4=3,0,7,1;MQ=60;FQ=31.4;PV4=1,9.3e-06,1,1 GT:PL:GQ 0/1:67,0,59:61 chr1 1430985 . C T 225 . DP=62;VDB=0.0393;AF1=0.5;AC1=1;DP4=13,20,9,17;MQ=60;FQ=225;PV4=0.79,0.3,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 1469289 . G C 33 . DP=11;VDB=0.0008;AF1=0.5;AC1=1;DP4=3,0,8,0;MQ=40;FQ=31.9;PV4=1,1.6e-05,0,0.48 GT:PL:GQ 0/1:63,0,61:62 chr1 1469440 . C T 53 . DP=28;VDB=0.0343;AF1=0.5;AC1=1;DP4=5,11,4,8;MQ=54;FQ=56;PV4=1,6.3e-08,1,0.15 GT:PL:GQ 0/1:83,0,255:86 chr1 1479333 . A G 56 . DP=18;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,5,4,4;MQ=60;FQ=59;PV4=1,8.2e-09,1,1 GT:PL:GQ 0/1:86,0,211:89 chr1 1509825 . A G 114 . DP=26;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,1,10,3;MQ=60;FQ=117;PV4=0.59,1.4e-06,1,1 GT:PL:GQ 0/1:144,0,182:99 chr1 1510035 . GGCG GG 48.2 . INDEL;DP=4;VDB=0.0041;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:87,6,0:10 chr1 1551927 . T C 44 . DP=29;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,3,6,2;MQ=60;FQ=47;PV4=0.61,3.7e-06,1,1 GT:PL:GQ 0/1:74,0,241:77 chr1 1558792 . T C 117 . DP=5;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,3,2;MQ=60;FQ=-42 GT:PL:GQ 1/1:150,15,0:27 chr1 1562437 . C G 116 . DP=25;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,9,3,11;MQ=60;FQ=119;PV4=1,1.6e-06,1,0.014 GT:PL:GQ 0/1:146,0,196:99 chr1 1564712 . G T 23 . DP=9;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,2,1,3;MQ=60;FQ=26;PV4=0.52,8.9e-05,1,0.0082 GT:PL:GQ 0/1:53,0,128:56 chr1 1575616 . T C 104 . DP=16;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,14,2;MQ=34;FQ=-75 GT:PL:GQ 1/1:137,48,0:93 chr1 1581558 . C T 9.31 . DP=2;VDB=0.0159;AF1=1;AC1=2;DP4=0,0,0,2;MQ=29;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr1 1581713 . A C 12.3 . DP=39;VDB=0.0216;AF1=0.5;AC1=1;DP4=21,2,15,1;MQ=56;FQ=15.1;PV4=1,6.2e-18,0.0094,1 GT:PL:GQ 0/1:42,0,239:44 chr1 1581759 . G A 14.2 . DP=89;VDB=0.0322;AF1=0.5;AC1=1;DP4=53,15,19,0;MQ=54;FQ=17.1;PV4=0.034,1,4.1e-40,0.45 GT:PL:GQ 0/1:44,0,255:47 chr1 1581881 . T C 28 . DP=97;VDB=0.0298;AF1=0.5;AC1=1;DP4=19,43,6,27;MQ=52;FQ=31;PV4=0.23,1.3e-36,3.1e-19,1 GT:PL:GQ 0/1:58,0,255:61 chr1 1581926 . G T 11.3 . DP=33;VDB=0.0025;AF1=0.5;AC1=1;DP4=1,22,1,9;MQ=54;FQ=14.2;PV4=0.52,5e-18,5.3e-07,1 GT:PL:GQ 0/1:41,0,220:43 chr1 1581958 . T C 6.98 . DP=6;VDB=0.0020;AF1=0.4999;AC1=1;DP4=0,3,0,3;MQ=52;FQ=9.53;PV4=1,0.021,0.067,0.11 GT:PL:GQ 0/1:36,0,75:37 chr1 1582106 . T C 222 . DP=110;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,74,31;MQ=33;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 1582202 . C T 176 . DP=158;VDB=0.0380;AF1=0.5;AC1=1;DP4=33,42,30,44;MQ=42;FQ=179;PV4=0.74,9.6e-39,1,1 GT:PL:GQ 0/1:206,0,255:99 chr1 1582455 . G A 164 . DP=43;VDB=0.0271;AF1=0.5;AC1=1;DP4=18,4,17,4;MQ=31;FQ=166;PV4=1,0.31,0.45,1 GT:PL:GQ 0/1:194,0,200:99 chr1 1582616 . T C 60 . DP=68;VDB=0.0216;AF1=0.5;AC1=1;DP4=8,27,4,27;MQ=44;FQ=63;PV4=0.35,7.5e-35,0.022,1 GT:PL:GQ 0/1:90,0,255:93 chr1 1582641 . T C 133 . DP=37;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,17,0,18;MQ=42;FQ=136;PV4=1,1,0.039,1 GT:PL:GQ 0/1:163,0,194:99 chr1 1582841 . A G 61 . DP=16;VDB=0.0042;AF1=0.5001;AC1=1;DP4=5,0,9,1;MQ=21;FQ=7.8;PV4=1,0.0006,1,0.33 GT:PL:GQ 0/1:91,0,34:37 chr1 1582844 . G T 52 . DP=17;VDB=0.0042;AF1=0.5;AC1=1;DP4=6,0,9,1;MQ=21;FQ=12.3;PV4=1,2.6e-07,1,1 GT:PL:GQ 0/1:82,0,39:42 chr1 1582880 . G C 68 . DP=30;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,0,17,2;MQ=20;FQ=18.1;PV4=0.52,3.8e-12,1,1 GT:PL:GQ 0/1:98,0,45:48 chr1 1582961 . G C 116 . DP=62;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,20,10,18;MQ=26;FQ=119;PV4=0.8,4.1e-17,0.049,1 GT:PL:GQ 0/1:146,0,230:99 chr1 1583003 . C T 81 . DP=52;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,22,4,19;MQ=29;FQ=84;PV4=0.7,6e-15,0.42,1 GT:PL:GQ 0/1:111,0,147:99 chr1 1585597 . A G 222 . DP=72;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,54,14;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr1 1585642 . G T 222 . DP=127;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,84,34;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 1586752 . T C 222 . DP=29;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,21,5;MQ=58;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 1599812 . C T 54 . DP=22;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,0,7,1;MQ=25;FQ=55.6;PV4=0.36,0.048,1,0.19 GT:PL:GQ 0/1:84,0,88:86 chr1 1599888 . A G 147 . DP=42;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,14,14,2;MQ=29;FQ=145;PV4=0.0033,1,1,0.13 GT:PL:GQ 0/1:177,0,174:99 chr1 1602787 . G T 27 . DP=3;VDB=0.0141;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:59,9,0:16 chr1 1644836 . G A 90 . DP=16;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,10,1,5;MQ=43;FQ=93;PV4=0.37,1,0.067,0.44 GT:PL:GQ 0/1:120,0,152:99 chr1 1645050 . C T 84 . DP=11;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,1,10;MQ=29;FQ=-60 GT:PL:GQ 1/1:117,33,0:63 chr1 1645366 . A G 17.6 . DP=4;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,0,4;MQ=17;FQ=-39 GT:PL:GQ 1/1:50,12,0:20 chr1 1646657 . T C 43.3 . DP=5;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,5;MQ=31;FQ=-42 GT:PL:GQ 1/1:76,15,0:27 chr1 1647778 . C G 50 . DP=76;VDB=0.0019;AF1=0.5;AC1=1;DP4=42,9,18,4;MQ=53;FQ=53;PV4=1,3.6e-23,2.5e-20,0.05 GT:PL:GQ 0/1:80,0,255:83 chr1 1647814 . T C 114 . DP=127;VDB=0.0140;AF1=0.5;AC1=1;DP4=51,24,35,15;MQ=50;FQ=117;PV4=0.85,8.1e-35,1.8e-35,1 GT:PL:GQ 0/1:144,0,255:99 chr1 1647871 . T C 116 . DP=127;VDB=0.0399;AF1=0.5;AC1=1;DP4=34,50,17,24;MQ=51;FQ=119;PV4=1,3.5e-22,3.4e-41,1 GT:PL:GQ 0/1:146,0,255:99 chr1 1647893 . CTTTCTTT CTTTCTTTTTCTTT 89.5 . INDEL;DP=106;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,42,5,21;MQ=52;FQ=92.5;PV4=0.21,1.8e-07,6.7e-34,0.03 GT:PL:GQ 0/1:127,0,255:99 chr1 1647928 . A G 137 . DP=88;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,28,14,43;MQ=50;FQ=48;PV4=0.0036,8.8e-37,1,1 GT:PL:GQ 0/1:167,0,75:78 chr1 1647983 . T A 33 . DP=22;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,16,0,6;MQ=52;FQ=36;PV4=1,0.33,8.3e-09,1 GT:PL:GQ 0/1:63,0,178:66 chr1 1647990 . C T 29 . DP=18;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,13,0,5;MQ=52;FQ=32;PV4=1,1,8.9e-07,0.48 GT:PL:GQ 0/1:59,0,174:62 chr1 1648002 . C T 12.3 . DP=15;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,10,0,5;MQ=50;FQ=15.1;PV4=1,1.1e-07,1.5e-05,0.06 GT:PL:GQ 0/1:42,0,161:44 chr1 1650787 . T C 225 . DP=132;VDB=0.0322;AF1=0.5;AC1=1;DP4=44,28,43,15;MQ=55;FQ=225;PV4=0.14,0.056,7.6e-11,1 GT:PL:GQ 0/1:255,0,255:99 chr1 1650797 . A G 174 . DP=136;VDB=0.0380;AF1=0.5;AC1=1;DP4=41,28,45,19;MQ=55;FQ=177;PV4=0.21,1.6e-31,9e-10,1 GT:PL:GQ 0/1:204,0,255:99 chr1 1650801 . T C 93 . DP=139;VDB=0.0392;AF1=0.5;AC1=1;DP4=42,28,43,19;MQ=55;FQ=96;PV4=0.28,2.1e-56,9e-10,1 GT:PL:GQ 0/1:123,0,255:99 chr1 1650807 . T C 69 . DP=142;VDB=0.0392;AF1=0.5;AC1=1;DP4=49,24,36,28;MQ=54;FQ=72;PV4=0.22,4.4e-59,1,1 GT:PL:GQ 0/1:99,0,255:99 chr1 1650832 . A G 177 . DP=155;VDB=0.0392;AF1=0.5;AC1=1;DP4=46,29,51,25;MQ=52;FQ=180;PV4=0.5,1.3e-31,2.7e-16,1 GT:PL:GQ 0/1:207,0,255:99 chr1 1650845 . G A 177 . DP=158;VDB=0.0400;AF1=0.5;AC1=1;DP4=50,28,45,28;MQ=52;FQ=180;PV4=0.87,8.5e-36,1,0.38 GT:PL:GQ 0/1:207,0,255:99 chr1 1650920 . G A 225 . DP=141;VDB=0.0392;AF1=0.5;AC1=1;DP4=31,47,27,31;MQ=49;FQ=225;PV4=0.48,1,2e-40,0.067 GT:PL:GQ 0/1:255,0,255:99 chr1 1650960 . G A 105 . DP=101;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,47,5,39;MQ=49;FQ=108;PV4=0.57,7e-37,4.1e-27,1 GT:PL:GQ 0/1:135,0,255:99 chr1 1650967 . T C 27 . DP=94;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,45,1,37;MQ=49;FQ=30;PV4=0.074,1.4e-28,7.4e-24,1 GT:PL:GQ 0/1:57,0,255:60 chr1 1650996 . T C 121 . DP=69;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,32,0,32;MQ=49;FQ=124;PV4=0.12,1,4.5e-12,1 GT:PL:GQ 0/1:151,0,255:99 chr1 1651003 . G A 49 . DP=58;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,26,0,30;MQ=49;FQ=52;PV4=0.23,4.6e-22,1.9e-12,0.24 GT:PL:GQ 0/1:79,0,234:82 chr1 1651047 . C T 37 . DP=24;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,12,0,10;MQ=50;FQ=40;PV4=1,1.1e-05,0.00021,1 GT:PL:GQ 0/1:67,0,158:70 chr1 1653004 . T C 193 . DP=52;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,41,7;MQ=47;FQ=-171 GT:PL:GQ 1/1:226,144,0:99 chr1 1653028 . C T 209 . DP=64;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,50,11;MQ=49;FQ=-211 GT:PL:GQ 1/1:242,184,0:99 chr1 1654013 . C G 89 . DP=8;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,8,0;MQ=29;FQ=-51 GT:PL:GQ 1/1:122,24,0:45 chr1 1654038 . G A 91 . DP=18;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,18,0;MQ=28;FQ=-81 GT:PL:GQ 1/1:124,54,0:99 chr1 1654058 . C T 86 . DP=20;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,20,0;MQ=29;FQ=-87 GT:PL:GQ 1/1:119,60,0:99 chr1 1654065 . AGCG A 179 . INDEL;DP=22;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,20,2;MQ=31;FQ=-101 GT:PL:GQ 1/1:220,66,0:99 chr1 1663831 . C T 153 . DP=44;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,14,13,8;MQ=60;FQ=156;PV4=0.13,2.1e-09,1,1 GT:PL:GQ 0/1:183,0,255:99 chr1 1663851 . G C 213 . DP=45;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,14,6,12;MQ=60;FQ=216;PV4=0.54,0.18,1,1 GT:PL:GQ 0/1:243,0,255:99 chr1 1663861 . G A 139 . DP=47;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,14,6,15;MQ=60;FQ=142;PV4=0.36,6.2e-08,1,0.1 GT:PL:GQ 0/1:169,0,255:99 chr1 1664019 . T C 115 . DP=6;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:148,15,0:27 chr1 1666175 . C T 73.5 . DP=17;VDB=0.0392;AF1=1;AC1=2;DP4=1,1,14,1;MQ=24;FQ=-34;PV4=0.23,0.22,1,0.055 GT:PL:GQ 1/1:105,7,0:12 chr1 1666251 . G A 11.3 . DP=31;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,17,4,1;MQ=26;FQ=14.2;PV4=0.13,1,1,0.12 GT:PL:GQ 0/1:41,0,179:43 chr1 1666303 . T C 27 . DP=17;VDB=0.0019;AF1=0.5;AC1=1;DP4=4,5,0,8;MQ=31;FQ=30;PV4=0.082,1e-08,0.00083,0.26 GT:PL:GQ 0/1:57,0,177:60 chr1 1666338 . G A 74.1 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,2,4;MQ=42;FQ=-45 GT:PL:GQ 1/1:107,18,0:33 chr1 1669646 . ACTCT ACT 9.71 . INDEL;DP=2;VDB=0.0139;AF1=1;AC1=2;DP4=0,0,2,0;MQ=26;FQ=-40.5 GT:PL:GQ 1/1:48,6,0:8 chr1 1669734 . G T 66 . DP=26;VDB=0.0099;AF1=0.5;AC1=1;DP4=13,3,8,1;MQ=35;FQ=69;PV4=1,6.4e-06,1,1 GT:PL:GQ 0/1:96,0,214:99 chr1 1669748 . A G 65 . DP=26;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,1,9,3;MQ=37;FQ=68;PV4=0.59,1.9e-11,1,1 GT:PL:GQ 0/1:95,0,173:98 chr1 1684347 . Ccctcctcctcctcctcctcctcctcctc CCCTcctcctcctcctcctcctcctcctcctc 217 . INDEL;DP=68;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,7,10,11;MQ=59;FQ=217;PV4=0.36,1,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr1 1684472 . C T 225 . DP=59;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,21,9,19;MQ=58;FQ=225;PV4=0.77,0.021,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 1685213 . C G 26 . DP=3;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:58,9,0:16 chr1 1685921 . TCCCTGGGACCGAAGTCGCCCCACCCTGGG TCCCTGGG 52.5 . INDEL;DP=13;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,4,3,2;MQ=50;FQ=55.5;PV4=1,1,0,1 GT:PL:GQ 0/1:90,0,255:93 chr1 1686040 . G T 138 . DP=82;VDB=0.0380;AF1=0.5;AC1=1;DP4=30,17,23,12;MQ=57;FQ=141;PV4=1,3.6e-23,1,1 GT:PL:GQ 0/1:168,0,255:99 chr1 1686943 . T C 72 . DP=14;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,8,0,5;MQ=60;FQ=75;PV4=1,1,1,1 GT:PL:GQ 0/1:102,0,168:99 chr1 1687625 . T C 57 . DP=4;VDB=0.0116;AF1=0.5032;AC1=1;DP4=1,0,2,1;MQ=54;FQ=-8.63;PV4=1,1,0.33,1 GT:PL:GQ 0/1:87,0,19:22 chr1 1688192 . A G 118 . DP=8;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,0;MQ=57;FQ=-48 GT:PL:GQ 1/1:151,21,0:39 chr1 1690126 . AACA AACACA 52.2 . INDEL;DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:91,6,0:10 chr1 1696659 . A G 72 . DP=9;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:105,24,0:45 chr1 1737895 . G A 132 . DP=43;VDB=0.0398;AF1=0.5;AC1=1;DP4=10,9,14,9;MQ=60;FQ=135;PV4=0.76,1.8e-13,1,0.2 GT:PL:GQ 0/1:162,0,255:99 chr1 1737900 . C T 110 . DP=41;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,9,12,9;MQ=60;FQ=113;PV4=1,2e-13,1,0.4 GT:PL:GQ 0/1:140,0,255:99 chr1 1823922 . A G 222 . DP=74;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,27,43;MQ=60;FQ=-215;PV4=0.39,1,1,0.27 GT:PL:GQ 1/1:255,188,0:99 chr1 1846765 . G A 153 . DP=57;VDB=0.0398;AF1=0.5;AC1=1;DP4=11,11,13,18;MQ=60;FQ=156;PV4=0.59,1.5e-16,0.2,1 GT:PL:GQ 0/1:183,0,255:99 chr1 1847856 . G T 138 . DP=40;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,4,18,4;MQ=59;FQ=141;PV4=0.71,4.5e-05,0.19,1 GT:PL:GQ 0/1:168,0,220:99 chr1 1848109 . G C 225 . DP=48;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,4,18,5;MQ=59;FQ=200;PV4=1,1,1,0.16 GT:PL:GQ 0/1:255,0,227:99 chr1 1849529 . A G 155 . DP=24;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,8,5,4;MQ=60;FQ=158;PV4=1,0.34,1,0.2 GT:PL:GQ 0/1:185,0,255:99 chr1 1850428 . A G 39 . DP=7;VDB=0.0197;AF1=0.5;AC1=1;DP4=4,0,1,2;MQ=57;FQ=41.9;PV4=0.14,0.22,1,0.13 GT:PL:GQ 0/1:69,0,87:72 chr1 1854109 . A G 152 . DP=66;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,18,14,14;MQ=60;FQ=155;PV4=1,4.5e-18,1,1 GT:PL:GQ 0/1:182,0,255:99 chr1 1855450 . A G 42 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:74,9,0:16 chr1 1858309 . T C 114 . DP=82;VDB=0.0392;AF1=0.5;AC1=1;DP4=31,12,15,19;MQ=59;FQ=117;PV4=0.019,4.3e-28,0.055,1 GT:PL:GQ 0/1:144,0,255:99 chr1 1859131 . C T 225 . DP=85;VDB=0.0271;AF1=0.5;AC1=1;DP4=22,22,21,18;MQ=60;FQ=225;PV4=0.83,0.39,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 1859296 . T C 13.2 . DP=10;VDB=0.0027;AF1=0.5;AC1=1;DP4=0,6,0,4;MQ=60;FQ=16.1;PV4=1,2.1e-06,1,1 GT:PL:GQ 0/1:43,0,131:46 chr1 1861582 . C T 61 . DP=41;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,5,13,2;MQ=60;FQ=64;PV4=1,8.9e-10,1,1 GT:PL:GQ 0/1:91,0,255:94 chr1 1870210 . G A 31.5 . DP=4;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:64,12,0:21 chr1 1871979 . G A 106 . DP=14;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,2,0,10;MQ=60;FQ=27;PV4=0.23,0.46,1,1 GT:PL:GQ 0/1:136,0,54:57 chr1 1873453 . G A 72 . DP=11;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,0,3,1;MQ=60;FQ=74.9;PV4=0.4,1,1,1 GT:PL:GQ 0/1:102,0,118:99 chr1 1873514 . A G 170 . DP=25;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,3,7,4;MQ=60;FQ=173;PV4=0.66,0.2,1,1 GT:PL:GQ 0/1:200,0,227:99 chr1 1873525 . T C 115 . DP=27;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,4,7,5;MQ=60;FQ=118;PV4=0.68,3.8e-06,1,1 GT:PL:GQ 0/1:145,0,233:99 chr1 1873625 . G A 68 . DP=24;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,8,2,11;MQ=60;FQ=71;PV4=0.63,4.9e-11,1,1 GT:PL:GQ 0/1:98,0,204:99 chr1 1878628 . C T 68 . DP=15;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,6,1,8;MQ=60;FQ=70.8;PV4=1,3.3e-06,1,1 GT:PL:GQ 0/1:98,0,112:99 chr1 1886859 . C T 225 . DP=51;VDB=0.0164;AF1=0.5;AC1=1;DP4=19,4,17,7;MQ=60;FQ=225;PV4=0.49,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 1887019 . A G 222 . DP=80;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,27,47;MQ=57;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr1 1887091 . CG C 135 . INDEL;DP=37;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,8,7,8;MQ=52;FQ=138;PV4=1,1.5e-05,4.5e-06,1 GT:PL:GQ 0/1:173,0,255:99 chr1 1887111 . GCC GC 127 . INDEL;DP=33;VDB=0.0398;AF1=0.5;AC1=1;DP4=8,6,4,8;MQ=52;FQ=130;PV4=0.27,0.086,2.2e-05,0.39 GT:PL:GQ 0/1:165,0,255:99 chr1 1887245 . G A 157 . DP=51;VDB=0.0190;AF1=0.5;AC1=1;DP4=12,13,18,8;MQ=59;FQ=160;PV4=0.16,9.7e-17,0.041,1 GT:PL:GQ 0/1:187,0,255:99 chr1 1888193 . C A 168 . DP=85;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,35,18,18;MQ=60;FQ=171;PV4=0.02,2.8e-25,1,1 GT:PL:GQ 0/1:198,0,255:99 chr1 1888330 . C T 47 . DP=6;VDB=0.0017;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=31.9;PV4=1,0.016,1,1 GT:PL:GQ 0/1:77,0,59:62 chr1 1956362 . G A 222 . DP=78;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,43,28;MQ=60;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr1 1957037 . T C 222 . DP=157;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,88,66;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 1960926 . T C 45.3 . DP=5;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:78,15,0:27 chr1 1987993 . T C 222 . DP=19;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,7,9;MQ=59;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 1991162 . G A 163 . DP=23;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,11,2,10;MQ=60;FQ=122;PV4=0.48,0.19,1,1 GT:PL:GQ 0/1:193,0,149:99 chr1 1991173 . A G 49 . DP=15;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,6,1,8;MQ=60;FQ=52;PV4=1,0.00035,1,0.2 GT:PL:GQ 0/1:79,0,110:82 chr1 2005740 . T C 213 . DP=14;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,3,10;MQ=60;FQ=-66 GT:PL:GQ 1/1:246,39,0:75 chr1 2106840 . T C 26 . DP=3;VDB=0.0224;AF1=1;AC1=2;DP4=0,0,0,3;MQ=52;FQ=-36 GT:PL:GQ 1/1:58,9,0:16 chr1 2118539 . T C 138 . DP=26;VDB=0.0190;AF1=0.5;AC1=1;DP4=9,2,9,1;MQ=60;FQ=141;PV4=1,1,1,1 GT:PL:GQ 0/1:168,0,186:99 chr1 2144982 . G T 116 . DP=45;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,19,3,19;MQ=60;FQ=119;PV4=1,6.5e-12,1,0.3 GT:PL:GQ 0/1:146,0,225:99 chr1 2234632 . G A 194 . DP=34;VDB=0.0118;AF1=0.5;AC1=1;DP4=13,2,16,2;MQ=60;FQ=189;PV4=1,0.15,1,1 GT:PL:GQ 0/1:224,0,217:99 chr1 2235656 . G A 52 . DP=19;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,0,8,1;MQ=59;FQ=55;PV4=0.47,2.1e-05,1,1 GT:PL:GQ 0/1:82,0,143:85 chr1 2286947 . A G 100 . DP=26;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,9,2,10;MQ=60;FQ=103;PV4=0.64,5.5e-08,1,1 GT:PL:GQ 0/1:130,0,244:99 chr1 2316583 . C T 30 . DP=3;VDB=0.0154;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:62,9,0:16 chr1 2322726 . G A 24 . DP=4;VDB=0.0141;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=24;PV4=1,1,1,1 GT:PL:GQ 0/1:54,0,54:54 chr1 2328714 . A G 50.3 . DP=5;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:83,15,0:27 chr1 2337032 . C T 169 . DP=13;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,12,1;MQ=58;FQ=-66 GT:PL:GQ 1/1:202,39,0:75 chr1 2337194 . C T 79 . DP=30;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,10,2,10;MQ=60;FQ=82;PV4=0.4,5.3e-10,1,1 GT:PL:GQ 0/1:109,0,255:99 chr1 2340200 . T C 222 . DP=51;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,28,19;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 2399119 . A G 189 . DP=26;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,13,10;MQ=60;FQ=-96 GT:PL:GQ 1/1:222,69,0:99 chr1 2399149 . A G 162 . DP=19;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,6,13;MQ=60;FQ=-84 GT:PL:GQ 1/1:195,57,0:99 chr1 2409892 . A G 97 . DP=39;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,9,11,4;MQ=58;FQ=100;PV4=0.73,5.4e-07,1,1 GT:PL:GQ 0/1:127,0,255:99 chr1 2411451 . A G 84 . DP=35;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,13,8,6;MQ=60;FQ=87;PV4=0.15,3.5e-14,1,1 GT:PL:GQ 0/1:114,0,255:99 chr1 2420590 . T C 6.2 . DP=5;VDB=0.0011;AF1=0.5002;AC1=1;DP4=1,0,3,0;MQ=60;FQ=3.56;PV4=1,0.02,1,0.24 GT:PL:GQ 0/1:35,0,29:32 chr1 2420913 . A G 35 . DP=3;VDB=0.0188;AF1=0.5003;AC1=1;DP4=0,1,0,2;MQ=60;FQ=4.77;PV4=1,1,1,0.46 GT:PL:GQ 0/1:65,0,30:33 chr1 2422614 . G A 54 . DP=20;VDB=0.0244;AF1=0.5;AC1=1;DP4=8,2,10,0;MQ=60;FQ=57;PV4=0.47,3.1e-09,1,0.27 GT:PL:GQ 0/1:84,0,198:87 chr1 2428874 . T C 134 . DP=10;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,0,5,2;MQ=60;FQ=22;PV4=1,1,1,1 GT:PL:GQ 0/1:164,0,49:52 chr1 2431057 . C T 86 . DP=45;VDB=0.0244;AF1=0.5;AC1=1;DP4=13,11,17,3;MQ=59;FQ=89;PV4=0.05,7.1e-14,0.14,1 GT:PL:GQ 0/1:116,0,255:99 chr1 2441358 . T C 93 . DP=26;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,7,5,6;MQ=60;FQ=96;PV4=1,1.7e-09,1,1 GT:PL:GQ 0/1:123,0,255:99 chr1 2441392 . T C 225 . DP=33;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,10,7,9;MQ=59;FQ=225;PV4=1,1,0.071,0.14 GT:PL:GQ 0/1:255,0,255:99 chr1 2442953 . C A 137 . DP=38;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,10,8,8;MQ=60;FQ=140;PV4=1,1.7e-08,1,1 GT:PL:GQ 0/1:167,0,255:99 chr1 2443212 . G A 23 . DP=10;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,2,0,7;MQ=60;FQ=16.6;PV4=1,1.5e-06,1,0.083 GT:PL:GQ 0/1:53,0,44:47 chr1 2445406 . A G 110 . DP=41;VDB=0.0398;AF1=0.5;AC1=1;DP4=17,3,11,7;MQ=60;FQ=113;PV4=0.14,2.6e-11,1,1 GT:PL:GQ 0/1:140,0,241:99 chr1 2446880 . A G 100 . DP=24;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,7,1,14;MQ=60;FQ=103;PV4=1,1.2e-08,1,1 GT:PL:GQ 0/1:130,0,152:99 chr1 2450544 . T G 10.4 . DP=19;VDB=0.0190;AF1=0.5;AC1=1;DP4=9,2,6,0;MQ=60;FQ=13.2;PV4=0.51,0.0013,1,0.36 GT:PL:GQ 0/1:40,0,169:42 chr1 2452357 . G A 8.65 . DP=3;VDB=0.0192;AF1=0.5002;AC1=1;DP4=0,1,0,2;MQ=60;FQ=4.36;PV4=1,0.13,1,1 GT:PL:GQ 0/1:38,0,30:33 chr1 2452569 . T C 11.3 . DP=15;VDB=0.0025;AF1=0.5;AC1=1;DP4=6,2,7,0;MQ=60;FQ=14.2;PV4=0.47,9.5e-12,1,1 GT:PL:GQ 0/1:41,0,177:43 chr1 2458010 . G C 117 . DP=28;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,8,5,9;MQ=60;FQ=120;PV4=1,1e-07,1,0.051 GT:PL:GQ 0/1:147,0,216:99 chr1 2487663 . C A 114 . DP=48;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,11,10,9;MQ=59;FQ=117;PV4=0.77,5.5e-08,0.12,1 GT:PL:GQ 0/1:144,0,255:99 chr1 2487766 . T C 225 . DP=56;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,13,16,11;MQ=60;FQ=225;PV4=0.79,1,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr1 2488153 . A G 109 . DP=27;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,6,4,15;MQ=60;FQ=78;PV4=1,0.00016,1,1 GT:PL:GQ 0/1:139,0,105:99 chr1 2490898 . C A 225 . DP=73;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,25,15,9;MQ=60;FQ=225;PV4=0.21,1,1,0.35 GT:PL:GQ 0/1:255,0,255:99 chr1 2490942 . C A 225 . DP=72;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,20,23,10;MQ=59;FQ=225;PV4=0.031,0.39,1,0.14 GT:PL:GQ 0/1:255,0,255:99 chr1 2491205 . C T 145 . DP=97;VDB=0.0322;AF1=0.5;AC1=1;DP4=23,23,26,21;MQ=60;FQ=148;PV4=0.68,3.1e-21,0.16,1 GT:PL:GQ 0/1:175,0,255:99 chr1 2519989 . G T 162 . DP=68;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,23,12,19;MQ=59;FQ=165;PV4=1,3.7e-20,0.45,0.28 GT:PL:GQ 0/1:192,0,255:99 chr1 2520302 . T C 179 . DP=35;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,8,9,4;MQ=60;FQ=182;PV4=0.73,1,1,1 GT:PL:GQ 0/1:209,0,255:99 chr1 2520500 . G A 100 . DP=18;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,9,0,8;MQ=60;FQ=103;PV4=1,0.037,1,1 GT:PL:GQ 0/1:130,0,153:99 chr1 2520527 . T C 17.1 . DP=8;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=60;FQ=20;PV4=1,0.00084,1,1 GT:PL:GQ 0/1:47,0,74:50 chr1 2522392 . G A 5.46 . DP=4;VDB=0.0149;AF1=0.4999;AC1=1;DP4=1,1,1,1;MQ=60;FQ=7.69;PV4=1,0.12,1,1 GT:PL:GQ 0/1:34,0,49:34 chr1 2524205 . C T 3.54 . DP=50;VDB=0.0343;AF1=0.4998;AC1=1;DP4=27,10,6,6;MQ=60;FQ=5.47;PV4=0.17,1.5e-19,1,0.0083 GT:PL:GQ 0/1:31,0,255:30 chr1 2524457 . T C 7.8 . DP=8;VDB=0.0027;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=10.4;PV4=1,0.00017,1,0.046 GT:PL:GQ 0/1:37,0,96:39 chr1 2526746 . A G 225 . DP=50;VDB=0.0216;AF1=0.5;AC1=1;DP4=11,15,10,13;MQ=60;FQ=225;PV4=1,1,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr1 2528133 . T C 225 . DP=66;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,19,15,13;MQ=60;FQ=225;PV4=0.61,1,1,0.46 GT:PL:GQ 0/1:255,0,255:99 chr1 2530341 . ag aGg 100 . INDEL;DP=9;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,4,1,4;MQ=60;FQ=48.5;PV4=1,1,1,0.1 GT:PL:GQ 0/1:138,0,83:86 chr1 2535613 . C A 145 . DP=40;VDB=0.0190;AF1=0.5;AC1=1;DP4=13,2,18,5;MQ=59;FQ=148;PV4=0.68,2.5e-10,0.21,1 GT:PL:GQ 0/1:175,0,205:99 chr1 2535758 . A G 131 . DP=51;VDB=0.0398;AF1=0.5;AC1=1;DP4=8,17,4,21;MQ=60;FQ=134;PV4=0.32,2.8e-12,1,0.29 GT:PL:GQ 0/1:161,0,255:99 chr1 2537095 . G A 86 . DP=31;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,15,7,5;MQ=59;FQ=89;PV4=0.045,0.00038,1,1 GT:PL:GQ 0/1:116,0,218:99 chr1 2537838 . C T 130 . DP=18;VDB=0.0393;AF1=0.5;AC1=1;DP4=1,8,2,6;MQ=60;FQ=128;PV4=0.58,1,1,1 GT:PL:GQ 0/1:160,0,156:99 chr1 2538349 . G A 54.2 . DP=9;VDB=0.0042;AF1=0.5263;AC1=1;DP4=1,0,6,1;MQ=60;FQ=-17.1;PV4=1,0.0067,1,1 GT:PL:GQ 0/1:84,0,10:13 chr1 2541269 . A G 188 . DP=53;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,18,13,17;MQ=60;FQ=191;PV4=0.035,2e-15,1,1 GT:PL:GQ 0/1:218,0,239:99 chr1 2542653 . A G 149 . DP=25;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,5,7,3;MQ=60;FQ=152;PV4=1,0.28,1,0.39 GT:PL:GQ 0/1:179,0,242:99 chr1 2560735 . A G 21 . DP=4;VDB=0.0151;AF1=0.5;AC1=1;DP4=2,0,0,2;MQ=60;FQ=15.5;PV4=0.33,1,1,1 GT:PL:GQ 0/1:51,0,43:45 chr1 2560882 . G A 35 . DP=9;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,3,2,2;MQ=60;FQ=38;PV4=1,0.13,1,0.26 GT:PL:GQ 0/1:65,0,85:68 chr1 2560903 . T G 27 . DP=11;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,4,2,3;MQ=60;FQ=30;PV4=1,0.00071,1,1 GT:PL:GQ 0/1:57,0,143:60 chr1 2573199 . A G 222 . DP=33;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,19,14;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 2700117 . C G 5.46 . DP=8;VDB=0.0218;AF1=0.4999;AC1=1;DP4=4,0,3,0;MQ=60;FQ=7.8;PV4=1,0.0037,1,1 GT:PL:GQ 0/1:34,0,101:34 chr1 2700372 . C T 67 . DP=18;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,6,3,6;MQ=59;FQ=70;PV4=1,3.3e-06,0.17,0.4 GT:PL:GQ 0/1:97,0,196:99 chr1 2938989 . G A 134 . DP=40;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,13,9,13;MQ=60;FQ=137;PV4=0.51,8.9e-13,1,1 GT:PL:GQ 0/1:164,0,244:99 chr1 2983963 . G A 144 . DP=64;VDB=0.0244;AF1=0.5;AC1=1;DP4=24,8,21,6;MQ=60;FQ=147;PV4=1,3.9e-12,1,0.31 GT:PL:GQ 0/1:174,0,255:99 chr1 2984087 . C A 138 . DP=68;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,28,7,22;MQ=60;FQ=141;PV4=1,1.2e-11,1,0.42 GT:PL:GQ 0/1:168,0,255:99 chr1 2985885 . C G 4.77 . DP=8;VDB=0.0041;AF1=0.4999;AC1=1;DP4=0,4,0,3;MQ=60;FQ=6.99;PV4=1,0.00042,1,0.27 GT:PL:GQ 0/1:33,0,91:33 chr1 3301721 . C T 63 . DP=25;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,1,12,0;MQ=59;FQ=66;PV4=1,2.2e-08,0.16,1 GT:PL:GQ 0/1:93,0,180:96 chr1 3312914 . T G 109 . DP=72;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,25,15,13;MQ=60;FQ=112;PV4=0.22,6.7e-21,1,1 GT:PL:GQ 0/1:139,0,255:99 chr1 3312963 . C T 225 . DP=60;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,17,8,24;MQ=60;FQ=225;PV4=0.56,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 3328358 . T C 222 . DP=76;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,34,39;MQ=59;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr1 3328659 . C T 123 . DP=79;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,12,15,23;MQ=59;FQ=126;PV4=0.037,7.6e-25,1,1 GT:PL:GQ 0/1:153,0,255:99 chr1 3329384 . C T 131 . DP=28;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,12,5,8;MQ=58;FQ=134;PV4=0.41,2e-05,0.062,0.0092 GT:PL:GQ 0/1:161,0,222:99 chr1 3342364 . C T 10.4 . DP=8;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=13.2;PV4=1,0.00019,1,1 GT:PL:GQ 0/1:40,0,74:42 chr1 3383665 . G A 45 . DP=13;VDB=0.0216;AF1=0.5;AC1=1;DP4=5,0,6,2;MQ=60;FQ=48;PV4=0.49,1.8e-07,1,0.35 GT:PL:GQ 0/1:75,0,107:78 chr1 3383898 . A G 62 . DP=23;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,11,1,9;MQ=59;FQ=65;PV4=1,2.4e-10,0.13,1 GT:PL:GQ 0/1:92,0,215:95 chr1 3385256 . A G 14.9 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:46,6,0:10 chr1 3385330 . T C 154 . DP=29;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,22,7;MQ=60;FQ=-114 GT:PL:GQ 1/1:187,87,0:99 chr1 3388269 . G A 104 . DP=40;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,5,16,4;MQ=60;FQ=107;PV4=1,3.9e-16,1,1 GT:PL:GQ 0/1:134,0,255:99 chr1 3388406 . A G 225 . DP=51;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,15,8,15;MQ=60;FQ=225;PV4=0.77,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 3389543 . T C 35.8 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:67,6,0:10 chr1 3389727 . C T 214 . DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,17,13,10;MQ=60;FQ=217;PV4=1,0.0018,1,0.15 GT:PL:GQ 0/1:244,0,255:99 chr1 3390238 . T A 137 . DP=23;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,19;MQ=59;FQ=-96 GT:PL:GQ 1/1:170,69,0:99 chr1 3394456 . T C 120 . DP=22;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,20,1;MQ=60;FQ=-90 GT:PL:GQ 1/1:153,63,0:99 chr1 3394640 . A G 222 . DP=52;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,40;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 3394674 . T C 172 . DP=35;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,4,30;MQ=59;FQ=-129 GT:PL:GQ 1/1:205,102,0:99 chr1 3395039 . G A 177 . DP=82;VDB=0.0345;AF1=0.5;AC1=1;DP4=25,21,22,14;MQ=59;FQ=180;PV4=0.65,3.8e-14,0.43,0.48 GT:PL:GQ 0/1:207,0,255:99 chr1 3395174 . C A 75 . DP=21;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,9,1,10;MQ=60;FQ=78;PV4=1,2.8e-08,1,1 GT:PL:GQ 0/1:105,0,175:99 chr1 3395973 . ACCCCC ACCC 78.5 . INDEL;DP=31;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,4,6,1;MQ=59;FQ=81.5;PV4=1,7.7e-06,0.038,1 GT:PL:GQ 0/1:116,0,255:99 chr1 3397188 . T C 113 . DP=18;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,3,14;MQ=60;FQ=-78 GT:PL:GQ 1/1:146,51,0:99 chr1 3414105 . C T 191 . DP=31;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,15,12;MQ=60;FQ=-108 GT:PL:GQ 1/1:224,81,0:99 chr1 3416449 . C A 192 . DP=23;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,6,14;MQ=60;FQ=-87 GT:PL:GQ 1/1:225,60,0:99 chr1 3417131 . A G 222 . DP=47;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,24,22;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 3417960 . G A 222 . DP=22;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,10,11;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 3418565 . T C 222 . DP=14;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,3,11;MQ=55;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr1 3418613 . CCG C 14.4 . INDEL;DP=2;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,0,2;MQ=47;FQ=-40.5 GT:PL:GQ 1/1:53,6,0:10 chr1 3440647 . T C 135 . DP=15;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,13,2;MQ=58;FQ=-72 GT:PL:GQ 1/1:168,45,0:87 chr1 3496479 . T C 194 . DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,9,7;MQ=60;FQ=-75 GT:PL:GQ 1/1:227,48,0:93 chr1 3518944 . T C 80 . DP=8;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:113,24,0:45 chr1 3527944 . C G 182 . DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,12;MQ=60;FQ=-75 GT:PL:GQ 1/1:215,48,0:93 chr1 3528082 . T C 27.5 . DP=5;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:60,12,0:21 chr1 3548136 . T C 222 . DP=47;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,17,27;MQ=59;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 3566625 . AGCAGGCTG A 162 . INDEL;DP=14;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,3,9;MQ=28;FQ=-70.5 GT:PL:GQ 1/1:203,36,0:69 chr1 3599514 . C T 121 . DP=19;VDB=0.0053;AF1=0.5;AC1=1;DP4=7,1,10,0;MQ=60;FQ=124;PV4=0.44,0.13,1,0.31 GT:PL:GQ 0/1:151,0,164:99 chr1 3607520 . G A 201 . DP=35;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,6,12,4;MQ=60;FQ=204;PV4=0.71,0.36,1,1 GT:PL:GQ 0/1:231,0,255:99 chr1 3607532 . G A 114 . DP=39;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,6,13,6;MQ=59;FQ=117;PV4=1,1.4e-12,1,1 GT:PL:GQ 0/1:144,0,255:99 chr1 3638674 . C T 222 . DP=143;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,41,93;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 3640085 . C G 45 . DP=11;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:78,24,0:45 chr1 3644349 . A G 69 . DP=11;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:102,33,0:63 chr1 3644374 . A G 37.1 . DP=7;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:70,18,0:33 chr1 3645835 . C A 9.49 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:41,9,0:12 chr1 3645844 . G A 97.3 . DP=5;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:130,15,0:27 chr1 3646137 . C T 201 . DP=61;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,31;MQ=60;FQ=-208 GT:PL:GQ 1/1:234,181,0:99 chr1 3646192 . G A 194 . DP=49;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,24,22;MQ=59;FQ=-165 GT:PL:GQ 1/1:227,138,0:99 chr1 3646214 . T C 222 . DP=43;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,21,21;MQ=59;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 3646291 . G A 222 . DP=39;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,18,21;MQ=58;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 3647962 . T C 222 . DP=24;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,18,3;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 3677933 . T C 225 . DP=22;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,4,6,8;MQ=60;FQ=150;PV4=1,0.4,1,0.059 GT:PL:GQ 0/1:255,0,177:99 chr1 3679139 . T C 3.01 . DP=8;VDB=0.0099;AF1=0.4997;AC1=1;DP4=4,2,1,1;MQ=60;FQ=4.77;PV4=1,0.024,1,0.46 GT:PL:GQ 0/1:30,0,151:28 chr1 3701523 . C T 82 . DP=6;VDB=0.0392;AF1=0.504;AC1=1;DP4=1,0,5,0;MQ=60;FQ=-9.5;PV4=1,1,1,0.29 GT:PL:GQ 0/1:112,0,18:21 chr1 3743433 . Tgg TGgg 214 . INDEL;DP=30;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,23;MQ=60;FQ=-110 GT:PL:GQ 1/1:255,75,0:99 chr1 3746583 . G T 95 . DP=15;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,3,11;MQ=58;FQ=-69 GT:PL:GQ 1/1:128,42,0:81 chr1 3746589 . C G 222 . DP=14;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,3,10;MQ=60;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr1 3747580 . C T 65 . DP=3;VDB=0.0125;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:97,9,0:16 chr1 3747603 . T C 96 . DP=8;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:129,24,0:45 chr1 3753136 . A T 222 . DP=32;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,19,12;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 3755675 . T C 222 . DP=201;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,73,119;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 3756120 . A G 222 . DP=41;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,34,4;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 3759784 . A G 155 . DP=15;VDB=0.0343;AF1=1;AC1=2;DP4=0,0,3,12;MQ=57;FQ=-72 GT:PL:GQ 1/1:188,45,0:87 chr1 3761479 . C T 222 . DP=28;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,15,11;MQ=58;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 3761650 . A G 84 . DP=9;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:117,27,0:51 chr1 3775454 . C G 108 . DP=16;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,13;MQ=58;FQ=-72 GT:PL:GQ 1/1:141,45,0:87 chr1 3786189 . G A 179 . DP=23;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,18,4;MQ=60;FQ=-93 GT:PL:GQ 1/1:212,66,0:99 chr1 3788968 . G A 222 . DP=24;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,19,2;MQ=57;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 3789195 . T C 222 . DP=47;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,10,32;MQ=51;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 3789229 . C T 85 . DP=20;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,14,3,3;MQ=54;FQ=88;PV4=0.018,0.011,0.3,0.0063 GT:PL:GQ 0/1:115,0,176:99 chr1 3800242 . A G 222 . DP=86;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,46,34;MQ=60;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr1 3807593 . G C 222 . DP=104;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,44,57;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 4772717 . G A 190 . DP=41;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,18,23;MQ=59;FQ=-150 GT:PL:GQ 1/1:223,123,0:99 chr1 4834420 . C T 54 . DP=16;VDB=0.0014;AF1=0.5;AC1=1;DP4=6,0,8,1;MQ=58;FQ=57;PV4=1,6.1e-08,0.22,0.42 GT:PL:GQ 0/1:84,0,120:87 chr1 4834606 . T C 225 . DP=43;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,15,7,15;MQ=60;FQ=225;PV4=1,0.25,1,0.33 GT:PL:GQ 0/1:255,0,255:99 chr1 4847845 . G A 122 . DP=125;VDB=0.0392;AF1=0.5;AC1=1;DP4=31,35,27,25;MQ=60;FQ=125;PV4=0.71,1.5e-31,0.43,1 GT:PL:GQ 0/1:152,0,255:99 chr1 5922697 . C T 4.13 . DP=5;VDB=0.0218;AF1=0.4998;AC1=1;DP4=1,1,2,0;MQ=60;FQ=6.19;PV4=1,0.014,1,1 GT:PL:GQ 0/1:32,0,56:31 chr1 5922834 . C A 158 . DP=33;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,7,13,8;MQ=60;FQ=161;PV4=0.3,1.6e-12,1,0.16 GT:PL:GQ 0/1:188,0,223:99 chr1 5925371 . G A 20.6 . DP=6;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:53,12,0:21 chr1 5926507 . T C 222 . DP=34;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,22;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 5933530 . A G 36 . DP=12;VDB=0.0030;AF1=0.5;AC1=1;DP4=2,7,1,2;MQ=60;FQ=39;PV4=1,0.36,1,1 GT:PL:GQ 0/1:66,0,196:69 chr1 5934490 . A G 222 . DP=78;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,45,27;MQ=59;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr1 5934500 . T C 225 . DP=82;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,20,21,15;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 5934837 . C T 27.3 . DP=6;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:60,15,0:27 chr1 5935162 . A T 222 . DP=20;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,11;MQ=59;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr1 5935222 . T C 32 . DP=7;VDB=0.0095;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=34.9;PV4=1,0.00027,1,1 GT:PL:GQ 0/1:62,0,77:65 chr1 5937327 . C T 157 . DP=34;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,6,6,13;MQ=60;FQ=160;PV4=0.17,1.9e-08,1,1 GT:PL:GQ 0/1:187,0,237:99 chr1 5937391 . C T 129 . DP=21;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,10,1,7;MQ=60;FQ=132;PV4=1,1,1,0.16 GT:PL:GQ 0/1:159,0,219:99 chr1 5939544 . T G 137 . DP=109;VDB=0.0392;AF1=0.5;AC1=1;DP4=30,17,37,21;MQ=60;FQ=140;PV4=1,7.1e-28,0.19,0.0081 GT:PL:GQ 0/1:167,0,255:99 chr1 5947308 . G A 43 . DP=23;VDB=0.0066;AF1=0.5;AC1=1;DP4=11,0,9,0;MQ=60;FQ=46;PV4=1,1.1e-07,1,1 GT:PL:GQ 0/1:73,0,155:76 chr1 5948677 . G A 124 . DP=66;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,11,21,8;MQ=60;FQ=127;PV4=0.78,9.5e-25,1,1 GT:PL:GQ 0/1:154,0,255:99 chr1 5964991 . T C 35 . DP=7;VDB=0.0000;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=38;PV4=1,0.12,1,1 GT:PL:GQ 0/1:65,0,98:68 chr1 5965381 . C T 133 . DP=85;VDB=0.0399;AF1=0.5;AC1=1;DP4=24,21,19,17;MQ=60;FQ=136;PV4=1,7.9e-35,1,0.18 GT:PL:GQ 0/1:163,0,255:99 chr1 5969139 . G A 64 . DP=29;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,3,11,4;MQ=60;FQ=67;PV4=1,7.5e-13,1,1 GT:PL:GQ 0/1:94,0,210:97 chr1 5987696 . T C 167 . DP=83;VDB=0.0400;AF1=0.5;AC1=1;DP4=20,25,19,18;MQ=60;FQ=170;PV4=0.66,1.5e-19,1,0.42 GT:PL:GQ 0/1:197,0,255:99 chr1 6038583 . G C 10.4 . DP=6;VDB=0.0060;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=13.2;PV4=1,0.0049,1,0.38 GT:PL:GQ 0/1:40,0,79:42 chr1 6111757 . G A 40 . DP=5;VDB=0.0199;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=26.9;PV4=1,0.24,1,0.18 GT:PL:GQ 0/1:70,0,54:57 chr1 6145365 . A G 85 . DP=10;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,2,8;MQ=60;FQ=-57 GT:PL:GQ 1/1:118,30,0:57 chr1 6145379 . C T 46 . DP=7;VDB=0.0033;AF1=0.504;AC1=1;DP4=0,1,0,6;MQ=60;FQ=-9.5;PV4=1,0.00082,1,1 GT:PL:GQ 0/1:76,0,18:21 chr1 6149053 . C T 126 . DP=17;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,2,3,10;MQ=60;FQ=56;PV4=0.54,2e-05,1,1 GT:PL:GQ 0/1:156,0,83:86 chr1 6149122 . G A 22 . DP=5;VDB=0.0211;AF1=0.5;AC1=1;DP4=1,1,0,2;MQ=60;FQ=24.6;PV4=1,0.3,1,1 GT:PL:GQ 0/1:52,0,62:55 chr1 6157282 . C T 24 . DP=9;VDB=0.0011;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=27;PV4=1,2e-07,1,1 GT:PL:GQ 0/1:54,0,99:57 chr1 6157297 . T C 43 . DP=17;VDB=0.0081;AF1=0.5;AC1=1;DP4=5,1,11,0;MQ=60;FQ=46;PV4=0.35,5.1e-05,1,0.076 GT:PL:GQ 0/1:73,0,109:76 chr1 6157434 . C T 114 . DP=68;VDB=0.0393;AF1=0.5;AC1=1;DP4=16,16,22,12;MQ=59;FQ=117;PV4=0.32,1.8e-23,1,0.17 GT:PL:GQ 0/1:144,0,255:99 chr1 6158562 . A G 222 . DP=72;VDB=0.0322;AF1=1;AC1=2;DP4=0,1,36,32;MQ=59;FQ=-206;PV4=0.48,1,1,0.29 GT:PL:GQ 1/1:255,179,0:99 chr1 6162054 . T C 79 . DP=31;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,29;MQ=60;FQ=-117 GT:PL:GQ 1/1:112,90,0:99 chr1 6170300 . CACT C 74.5 . INDEL;DP=10;VDB=0.0014;AF1=0.5;AC1=1;DP4=5,0,5,0;MQ=53;FQ=77.5;PV4=1,0.12,0.02,0.26 GT:PL:GQ 0/1:112,0,176:99 chr1 6170424 . CG C 217 . INDEL;DP=70;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,11,17,20;MQ=59;FQ=217;PV4=0.097,7.8e-25,0.026,0.21 GT:PL:GQ 0/1:255,0,255:99 chr1 6184092 . A G 75 . DP=23;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,4,5,3;MQ=60;FQ=78;PV4=1,0.0012,1,0.43 GT:PL:GQ 0/1:105,0,223:99 chr1 6184286 . A G 47 . DP=5;VDB=0.0133;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=14.2;PV4=1,1,1,0.21 GT:PL:GQ 0/1:77,0,41:44 chr1 6204266 . A G 115 . DP=41;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,16,6,15;MQ=59;FQ=118;PV4=0.72,2.7e-16,0.17,0.36 GT:PL:GQ 0/1:145,0,255:99 chr1 6239937 . cg cGg 88.7 . INDEL;DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,5,0;MQ=55;FQ=-49.5 GT:PL:GQ 1/1:129,15,0:27 chr1 6257826 . T C 225 . DP=38;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,7,11,6;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 6257856 . G A 222 . DP=44;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,20;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 6272137 . A G 44 . DP=35;VDB=0.0384;AF1=0.5;AC1=1;DP4=10,5,6,5;MQ=59;FQ=47;PV4=0.69,1.8e-12,0.13,0.33 GT:PL:GQ 0/1:74,0,255:77 chr1 6278414 . A G 172 . DP=51;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,12,10,16;MQ=59;FQ=175;PV4=0.77,1.5e-08,1,0.092 GT:PL:GQ 0/1:202,0,255:99 chr1 6279370 . G C 64 . DP=17;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,3,3,8;MQ=59;FQ=67;PV4=0.6,3.2e-07,1,0.37 GT:PL:GQ 0/1:94,0,139:97 chr1 6295843 . C A 9.53 . DP=4;VDB=0.0224;AF1=0.5006;AC1=1;DP4=0,1,1,1;MQ=60;FQ=-3.65;PV4=1,0.21,1,0.42 GT:PL:GQ 0/1:39,0,26:30 chr1 6305292 . C A 85 . DP=14;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,1,6,3;MQ=57;FQ=66;PV4=1,0.0015,1,0.44 GT:PL:GQ 0/1:115,0,93:96 chr1 6305303 . C A 132 . DP=17;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,2,7,5;MQ=57;FQ=57;PV4=1,0.025,1,0.11 GT:PL:GQ 0/1:162,0,84:87 chr1 6313938 . C T 206 . DP=30;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,11,7,7;MQ=59;FQ=189;PV4=0.24,0.23,1,1 GT:PL:GQ 0/1:236,0,216:99 chr1 6314822 . T C 225 . DP=42;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,14,5,13;MQ=59;FQ=225;PV4=0.74,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 6530965 . CGGG CGGGG 214 . INDEL;DP=23;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,7,15;MQ=59;FQ=-101 GT:PL:GQ 1/1:255,66,0:99 chr1 6545390 . A T 125 . DP=25;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,5,7,7;MQ=60;FQ=128;PV4=1,7.3e-10,1,1 GT:PL:GQ 0/1:155,0,194:99 chr1 6557009 . A C 174 . DP=42;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,10,9,5;MQ=59;FQ=177;PV4=1,0.42,1,1 GT:PL:GQ 0/1:204,0,255:99 chr1 6579521 . G C 114 . DP=80;VDB=0.0271;AF1=0.5;AC1=1;DP4=22,20,23,14;MQ=60;FQ=117;PV4=0.5,1.1e-31,1,1 GT:PL:GQ 0/1:144,0,255:99 chr1 6579607 . C T 105 . DP=30;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,2,28;MQ=59;FQ=-117 GT:PL:GQ 1/1:138,90,0:99 chr1 6585804 . C T 46.5 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:79,12,0:21 chr1 6586070 . C T 222 . DP=71;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,19,51;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr1 6591937 . T C 30 . DP=3;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:62,9,0:16 chr1 6609559 . C A 41.5 . DP=4;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:74,12,0:21 chr1 6609851 . A G 222 . DP=67;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,9,58;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr1 6609896 . G A 180 . DP=30;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,28;MQ=60;FQ=-111 GT:PL:GQ 1/1:213,84,0:99 chr1 6610382 . C T 28.8 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:60,6,0:10 chr1 6614391 . A C 96.1 . DP=6;VDB=0.0325;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-45 GT:PL:GQ 1/1:129,18,0:33 chr1 6614415 . A G 37.8 . DP=2;VDB=0.0131;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:69,6,0:10 chr1 6614535 . G A 145 . DP=7;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,5;MQ=60;FQ=-48 GT:PL:GQ 1/1:178,21,0:39 chr1 6615690 . A G 148 . DP=10;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:181,30,0:57 chr1 6615695 . C T 53 . DP=9;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:86,27,0:51 chr1 6635231 . A G 162 . DP=48;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,34,13;MQ=59;FQ=-168 GT:PL:GQ 1/1:195,141,0:99 chr1 6646959 . Gcctgccttccctgccttccctgcctt Gcctgccttccctgcctt 214 . INDEL;DP=75;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,18,30;MQ=34;FQ=-179 GT:PL:GQ 1/1:255,144,0:99 chr1 6659505 . G A 217 . DP=40;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,10,30;MQ=60;FQ=-147 GT:PL:GQ 1/1:250,120,0:99 chr1 6662913 . G A 78.1 . DP=7;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:111,21,0:39 chr1 6681744 . C T 95.3 . DP=5;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:128,15,0:27 chr1 6685442 . A G 17.8 . DP=2;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:49,6,0:10 chr1 6693097 . A G 73 . DP=13;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,12;MQ=57;FQ=-66 GT:PL:GQ 1/1:106,39,0:75 chr1 6694207 . A G 113 . DP=17;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,1,13;MQ=60;FQ=-69 GT:PL:GQ 1/1:146,42,0:81 chr1 6694574 . G A 222 . DP=15;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,11,4;MQ=58;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr1 6695802 . A G 222 . DP=58;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,11,43;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr1 6704635 . A G 222 . DP=70;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,30,37;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr1 6705944 . C T 225 . DP=84;VDB=0.0298;AF1=0.5;AC1=1;DP4=27,27,14,15;MQ=60;FQ=225;PV4=1,0.31,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 6711146 . T C 222 . DP=50;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,27,21;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 6761702 . C T 159 . DP=22;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,19,0;MQ=60;FQ=-84 GT:PL:GQ 1/1:192,57,0:99 chr1 6947717 . C T 131 . DP=65;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,16,16,13;MQ=60;FQ=134;PV4=1,2e-24,1,0.37 GT:PL:GQ 0/1:161,0,255:99 chr1 7151479 . T C 170 . DP=121;VDB=0.0400;AF1=0.5;AC1=1;DP4=30,34,24,30;MQ=60;FQ=173;PV4=0.85,1.6e-31,1,1 GT:PL:GQ 0/1:200,0,255:99 chr1 7166332 . G A 12.3 . DP=11;VDB=0.0019;AF1=0.5;AC1=1;DP4=6,0,5,0;MQ=58;FQ=15.1;PV4=1,3.5e-06,0.15,1 GT:PL:GQ 0/1:42,0,120:44 chr1 7202190 . T C 182 . DP=64;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,20,15,17;MQ=60;FQ=185;PV4=0.31,4.6e-11,0.17,1 GT:PL:GQ 0/1:212,0,255:99 chr1 7289417 . C T 7.8 . DP=6;VDB=0.0067;AF1=0.5;AC1=1;DP4=2,2,1,1;MQ=60;FQ=10.4;PV4=1,0.31,1,0.016 GT:PL:GQ 0/1:37,0,96:39 chr1 7289777 . G A 157 . DP=24;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,11,13;MQ=60;FQ=-99 GT:PL:GQ 1/1:190,72,0:99 chr1 7527824 . C T 225 . DP=71;VDB=0.0400;AF1=0.5;AC1=1;DP4=20,10,28,11;MQ=60;FQ=225;PV4=0.79,0.054,1,0.37 GT:PL:GQ 0/1:255,0,255:99 chr1 7527996 . T C 78 . DP=26;VDB=0.0380;AF1=0.5;AC1=1;DP4=0,13,1,10;MQ=60;FQ=81;PV4=0.46,1.1e-07,1,0.43 GT:PL:GQ 0/1:108,0,154:99 chr1 7624855 . G T 114 . DP=22;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,2,9,3;MQ=60;FQ=117;PV4=1,7.1e-07,1,1 GT:PL:GQ 0/1:144,0,186:99 chr1 7700674 . C T 131 . DP=23;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,11,0,11;MQ=60;FQ=130;PV4=1,1,1,0.48 GT:PL:GQ 0/1:161,0,159:99 chr1 7737799 . A G 151 . DP=77;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,9,66;MQ=60;FQ=-253 GT:PL:GQ 1/1:184,226,0:99 chr1 7792411 . C T 24 . DP=6;VDB=0.0156;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=27;PV4=1,0.28,1,1 GT:PL:GQ 0/1:54,0,82:57 chr1 7807897 . A G 87 . DP=72;VDB=0.0271;AF1=0.5;AC1=1;DP4=14,27,9,19;MQ=59;FQ=90;PV4=1,2.3e-20,1,1 GT:PL:GQ 0/1:117,0,255:99 chr1 7811014 . G A 49 . DP=21;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,1,9,2;MQ=60;FQ=52;PV4=1,1.5e-09,1,1 GT:PL:GQ 0/1:79,0,169:82 chr1 7811215 . A G 196 . DP=74;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,17,22,21;MQ=60;FQ=199;PV4=0.63,1e-15,1,1 GT:PL:GQ 0/1:226,0,255:99 chr1 7861153 . CTTT CTTTT 142 . INDEL;DP=8;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,6,2;MQ=57;FQ=-58.5 GT:PL:GQ 1/1:183,24,0:45 chr1 7861345 . G A 47 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,0,3;MQ=52;FQ=-36 GT:PL:GQ 1/1:79,9,0:16 chr1 7863293 . C T 152 . DP=12;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:185,30,0:57 chr1 7869915 . G C 134 . DP=12;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,8,4;MQ=60;FQ=-63 GT:PL:GQ 1/1:167,36,0:69 chr1 7870048 . T C 222 . DP=29;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,12;MQ=60;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 7870144 . A C 220 . DP=36;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,16,20;MQ=60;FQ=-135 GT:PL:GQ 1/1:253,108,0:99 chr1 7880469 . A G 133 . DP=6;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,5,1;MQ=60;FQ=-45 GT:PL:GQ 1/1:166,18,0:33 chr1 7887493 . T C 222 . DP=131;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,78,49;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 7890064 . A G 222 . DP=237;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,124,103;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 7906476 . G T 222 . DP=46;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,27,18;MQ=58;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 7906914 . T C 150 . DP=51;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,47;MQ=60;FQ=-178 GT:PL:GQ 1/1:183,151,0:99 chr1 7913430 . G A 222 . DP=72;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,34,35;MQ=60;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr1 7913590 . C T 87 . DP=24;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,10,2,10;MQ=60;FQ=90;PV4=1,3.8e-07,1,0.17 GT:PL:GQ 0/1:117,0,204:99 chr1 7998963 . T G 225 . DP=47;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,14,8,18;MQ=60;FQ=225;PV4=1,0.32,0.19,0.34 GT:PL:GQ 0/1:255,0,255:99 chr1 8384268 . T C 222 . DP=25;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,21,3;MQ=59;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 8390213 . G A 42 . DP=10;VDB=0.0208;AF1=0.5;AC1=1;DP4=6,1,3,0;MQ=60;FQ=45;PV4=1,1,1,1 GT:PL:GQ 0/1:72,0,162:75 chr1 8390495 . A G 222 . DP=42;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,16;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 8397803 . C T 222 . DP=25;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,20,3;MQ=59;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr1 8418644 . C A 217 . DP=42;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,19,22;MQ=59;FQ=-150 GT:PL:GQ 1/1:250,123,0:99 chr1 8418650 . T C 201 . DP=42;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,21;MQ=59;FQ=-144 GT:PL:GQ 1/1:234,117,0:99 chr1 8421092 . C T 215 . DP=13;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,9,4;MQ=60;FQ=-66 GT:PL:GQ 1/1:248,39,0:75 chr1 8421203 . T C 219 . DP=14;VDB=0.0305;AF1=1;AC1=2;DP4=0,0,6,7;MQ=60;FQ=-66 GT:PL:GQ 1/1:252,39,0:75 chr1 8422676 . T C 222 . DP=29;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,16,11;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 8526142 . G A 75 . DP=8;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:108,24,0:45 chr1 8557691 . A C 85 . DP=16;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,15;MQ=60;FQ=-72 GT:PL:GQ 1/1:118,45,0:87 chr1 8930369 . T C 158 . DP=11;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,11,0;MQ=58;FQ=-60 GT:PL:GQ 1/1:191,33,0:63 chr1 8930385 . G A 153 . DP=13;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,12,0;MQ=58;FQ=-63 GT:PL:GQ 1/1:186,36,0:69 chr1 9009214 . C T 23 . DP=4;VDB=0.0017;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:55,9,0:15 chr1 9009406 . C T 222 . DP=59;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,23,32;MQ=60;FQ=-161;PV4=0.43,1,1,0.25 GT:PL:GQ 1/1:255,134,0:99 chr1 9009444 . A C 222 . DP=42;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,23;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 9011537 . G A 212 . DP=80;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,39,33;MQ=59;FQ=-244 GT:PL:GQ 1/1:245,217,0:99 chr1 9011586 . T G 212 . DP=95;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,48,44;MQ=60;FQ=-282 GT:PL:GQ 1/1:245,255,0:99 chr1 9011722 . G T 212 . DP=24;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,19;MQ=60;FQ=-87 GT:PL:GQ 1/1:245,60,0:99 chr1 9063602 . G C 16.1 . DP=23;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,15,0,6;MQ=60;FQ=19.1;PV4=1,6.8e-12,1,1 GT:PL:GQ 0/1:46,0,213:49 chr1 9084924 . T C 135 . DP=25;VDB=0.0053;AF1=0.5;AC1=1;DP4=12,3,9,1;MQ=59;FQ=138;PV4=0.63,1,1,1 GT:PL:GQ 0/1:165,0,215:99 chr1 9098742 . G A 33 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,5,6,1;MQ=60;FQ=36;PV4=0.62,5.7e-07,1,1 GT:PL:GQ 0/1:63,0,255:66 chr1 9307033 . G A 225 . DP=79;VDB=0.0365;AF1=0.5;AC1=1;DP4=23,17,17,21;MQ=60;FQ=225;PV4=0.36,1,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr1 9307138 . T C 186 . DP=55;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,21,14,13;MQ=60;FQ=189;PV4=0.047,1.3e-14,0.16,1 GT:PL:GQ 0/1:216,0,255:99 chr1 9323910 . G A 157 . DP=98;VDB=0.0399;AF1=0.5;AC1=1;DP4=28,15,34,19;MQ=60;FQ=160;PV4=1,8.8e-30,1,0.11 GT:PL:GQ 0/1:187,0,255:99 chr1 9324213 . C T 129 . DP=45;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,11,11,11;MQ=59;FQ=132;PV4=1,3e-18,1,1 GT:PL:GQ 0/1:159,0,255:99 chr1 9324571 . T C 225 . DP=77;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,20,9,20;MQ=60;FQ=225;PV4=0.056,0.14,1,0.49 GT:PL:GQ 0/1:255,0,255:99 chr1 9324670 . A G 225 . DP=77;VDB=0.0393;AF1=0.5;AC1=1;DP4=26,14,18,9;MQ=60;FQ=225;PV4=1,1,1,0.12 GT:PL:GQ 0/1:255,0,255:99 chr1 9416151 . G A 154 . DP=111;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,22,27,35;MQ=60;FQ=157;PV4=0.34,7.1e-47,0.19,1 GT:PL:GQ 0/1:184,0,255:99 chr1 9416346 . C T 167 . DP=58;VDB=0.0398;AF1=0.5;AC1=1;DP4=17,11,15,13;MQ=60;FQ=170;PV4=0.79,1.7e-17,1,1 GT:PL:GQ 0/1:197,0,255:99 chr1 9627521 . A G 21 . DP=4;VDB=0.0155;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=54;FQ=21.9;PV4=1,1,0.21,1 GT:PL:GQ 0/1:51,0,53:52 chr1 9642329 . C T 191 . DP=38;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,6,15,3;MQ=59;FQ=194;PV4=0.45,0.017,0.15,1 GT:PL:GQ 0/1:221,0,255:99 chr1 9657120 . G A 59 . DP=9;VDB=0.0244;AF1=0.5006;AC1=1;DP4=1,1,2,4;MQ=60;FQ=-3.53;PV4=1,0.33,1,1 GT:PL:GQ 0/1:89,0,26:29 chr1 9658465 . T G 214 . DP=40;VDB=0.0164;AF1=0.5;AC1=1;DP4=20,3,13,4;MQ=60;FQ=217;PV4=0.43,0.37,1,0.31 GT:PL:GQ 0/1:244,0,255:99 chr1 9658707 . G A 5.46 . DP=7;VDB=0.0041;AF1=0.4999;AC1=1;DP4=0,3,0,4;MQ=60;FQ=7.8;PV4=1,0.00028,1,0.08 GT:PL:GQ 0/1:34,0,75:34 chr1 9661061 . A G 11.3 . DP=13;VDB=0.0002;AF1=0.5;AC1=1;DP4=8,0,4,0;MQ=56;FQ=14.2;PV4=1,9.5e-07,1,0.032 GT:PL:GQ 0/1:41,0,144:43 chr1 9670483 . T A 78 . DP=50;VDB=0.0053;AF1=0.5;AC1=1;DP4=27,2,15,4;MQ=60;FQ=81;PV4=0.2,7.4e-21,1,0.43 GT:PL:GQ 0/1:108,0,242:99 chr1 9670834 . C T 42 . DP=16;VDB=0.0140;AF1=0.5;AC1=1;DP4=3,5,0,8;MQ=60;FQ=45;PV4=0.2,1.4e-08,1,1 GT:PL:GQ 0/1:72,0,180:75 chr1 9714177 . G A 50 . DP=20;VDB=0.0053;AF1=0.5;AC1=1;DP4=8,0,11,1;MQ=59;FQ=53;PV4=1,8.9e-15,1,0.24 GT:PL:GQ 0/1:80,0,133:83 chr1 9781412 . C G 100 . DP=27;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,10,5,10;MQ=60;FQ=103;PV4=0.2,3.6e-09,1,1 GT:PL:GQ 0/1:130,0,175:99 chr1 9782556 . C T 225 . DP=82;VDB=0.0399;AF1=0.5;AC1=1;DP4=33,15,16,18;MQ=60;FQ=225;PV4=0.068,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 9797640 . G C 225 . DP=57;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,11,13,20;MQ=60;FQ=225;PV4=0.42,0.22,1,0.39 GT:PL:GQ 0/1:255,0,255:99 chr1 9816620 . T C 222 . DP=67;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,32,32;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr1 10001235 . TTTCGTTCGTTCGttc TTTCGTTCGttc 145 . INDEL;DP=19;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,6,0,5;MQ=60;FQ=148;PV4=0.49,1,1,1 GT:PL:GQ 0/1:183,0,250:99 chr1 10027540 . G A 27 . DP=9;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,3,0,6;MQ=60;FQ=29.9;PV4=1,2.7e-05,1,0.17 GT:PL:GQ 0/1:57,0,74:60 chr1 10190884 . A T 133 . DP=82;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,23,22,20;MQ=60;FQ=136;PV4=0.26,1.9e-37,1,1 GT:PL:GQ 0/1:163,0,255:99 chr1 10218377 . A G 26 . DP=27;VDB=0.0008;AF1=0.5;AC1=1;DP4=12,0,14,0;MQ=60;FQ=29;PV4=1,4.2e-13,1,0.07 GT:PL:GQ 0/1:56,0,159:59 chr1 10218439 . T C 225 . DP=85;VDB=0.0392;AF1=0.5;AC1=1;DP4=30,5,40,9;MQ=59;FQ=225;PV4=0.77,1,0.12,1 GT:PL:GQ 0/1:255,0,255:99 chr1 10238770 . A G 143 . DP=80;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,27,14,17;MQ=60;FQ=146;PV4=1,2.1e-25,1,1 GT:PL:GQ 0/1:173,0,255:99 chr1 10335315 . G A 150 . DP=11;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,10,0;MQ=58;FQ=-57 GT:PL:GQ 1/1:183,30,0:57 chr1 10342352 . C T 27 . DP=24;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,3,9,1;MQ=60;FQ=30;PV4=0.59,1.2e-09,1,1 GT:PL:GQ 0/1:57,0,213:60 chr1 10342629 . G A 40 . DP=9;VDB=0.0220;AF1=0.5;AC1=1;DP4=0,6,0,3;MQ=60;FQ=43;PV4=1,0.29,1,1 GT:PL:GQ 0/1:70,0,132:73 chr1 10386506 . T C 94 . DP=27;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,11,1,15;MQ=60;FQ=97;PV4=1,1.8e-07,1,1 GT:PL:GQ 0/1:124,0,144:99 chr1 10412636 . A T 20 . DP=10;VDB=0.0199;AF1=0.5;AC1=1;DP4=6,0,4,0;MQ=60;FQ=23;PV4=1,1.8e-05,1,0.46 GT:PL:GQ 0/1:50,0,133:53 chr1 10421878 . A G 161 . DP=67;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,20,12,22;MQ=59;FQ=164;PV4=1,2.6e-21,1,0.4 GT:PL:GQ 0/1:191,0,255:99 chr1 10425117 . ATTTTTTTT ATTTTTTT 7.72 . INDEL;DP=12;VDB=0.0365;AF1=1;AC1=2;DP4=1,1,7,2;MQ=60;FQ=-41.5;PV4=0.49,0.00082,1,0.14 GT:PL:GQ 1/1:46,7,0:9 chr1 10431132 . C T 69 . DP=27;VDB=0.0398;AF1=0.5;AC1=1;DP4=11,1,12,2;MQ=60;FQ=72;PV4=1,5.1e-08,1,1 GT:PL:GQ 0/1:99,0,179:99 chr1 10435196 . A G 33 . DP=4;VDB=0.0149;AF1=0.5002;AC1=1;DP4=1,0,2,0;MQ=60;FQ=5.46;PV4=1,0.41,1,0.35 GT:PL:GQ 0/1:63,0,31:34 chr1 10463354 . C T 18.1 . DP=7;VDB=0.0180;AF1=0.5;AC1=1;DP4=0,5,0,2;MQ=60;FQ=21;PV4=1,1,1,0.25 GT:PL:GQ 0/1:48,0,108:51 chr1 10479635 . C G 105 . DP=179;VDB=0.0365;AF1=0.5;AC1=1;DP4=47,39,43,45;MQ=60;FQ=108;PV4=0.45,3.8e-69,1,1 GT:PL:GQ 0/1:135,0,255:99 chr1 10502307 . ATTTTTTTTTT ATTTTTTTTT 5.8 . INDEL;DP=9;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-61.5 GT:PL:GQ 1/1:45,27,0:28 chr1 10511544 . C T 89 . DP=26;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,8,3,9;MQ=60;FQ=92;PV4=0.67,1.4e-06,1,0.38 GT:PL:GQ 0/1:119,0,228:99 chr1 10511589 . T C 137 . DP=18;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,2,11;MQ=60;FQ=-66 GT:PL:GQ 1/1:170,39,0:75 chr1 10529194 . T C 162 . DP=14;VDB=0.0081;AF1=0.5;AC1=1;DP4=3,0,10,1;MQ=60;FQ=34;PV4=1,0.2,1,0.49 GT:PL:GQ 0/1:192,0,61:64 chr1 10555257 . C T 222 . DP=49;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,34,15;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 10596388 . A G 222 . DP=17;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,6,10;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 10678373 . C T 30 . DP=65;VDB=0.0345;AF1=0.5;AC1=1;DP4=33,9,19,2;MQ=59;FQ=33;PV4=0.31,2.4e-17,0.31,1 GT:PL:GQ 0/1:60,0,255:63 chr1 10689942 . G T 93 . DP=23;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,4,4,11;MQ=60;FQ=96;PV4=0.63,6.1e-10,1,0.4 GT:PL:GQ 0/1:123,0,150:99 chr1 10713765 . T C 186 . DP=83;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,19,27,16;MQ=59;FQ=189;PV4=0.38,5e-23,0.086,0.35 GT:PL:GQ 0/1:216,0,255:99 chr1 10714436 . C T 18.1 . DP=11;VDB=0.0053;AF1=0.5;AC1=1;DP4=5,1,4,1;MQ=60;FQ=21;PV4=1,1.3e-07,1,0.25 GT:PL:GQ 0/1:48,0,148:51 chr1 10719645 . A G 45 . DP=7;VDB=0.0116;AF1=0.5;AC1=1;DP4=4,0,3,0;MQ=60;FQ=48;PV4=1,1,1,1 GT:PL:GQ 0/1:75,0,96:78 chr1 11030014 . G A 92 . DP=19;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,2,10,2;MQ=60;FQ=95;PV4=0.6,5.7e-05,1,0.39 GT:PL:GQ 0/1:122,0,141:99 chr1 11042201 . C CAG 215 . INDEL;DP=6;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,2,4;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:255,18,0:33 chr1 11079077 . A G 7.8 . DP=5;VDB=0.0174;AF1=0.5;AC1=1;DP4=0,3,0,2;MQ=60;FQ=10.4;PV4=1,0.29,1,0.05 GT:PL:GQ 0/1:37,0,73:39 chr1 11080723 . tgg tGgg 140 . INDEL;DP=14;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,4,1,8;MQ=60;FQ=62.5;PV4=1,1,1,1 GT:PL:GQ 0/1:178,0,97:99 chr1 11086097 . AT ATT 217 . INDEL;DP=53;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,17,11,15;MQ=60;FQ=217;PV4=0.78,1,1,0.43 GT:PL:GQ 0/1:255,0,255:99 chr1 11087524 . G A 176 . DP=127;VDB=0.0399;AF1=0.5;AC1=1;DP4=20,36,31,34;MQ=60;FQ=179;PV4=0.2,1.6e-31,1,1 GT:PL:GQ 0/1:206,0,255:99 chr1 11087835 . T C 4.13 . DP=4;VDB=0.0186;AF1=0.4998;AC1=1;DP4=0,2,0,2;MQ=60;FQ=6.2;PV4=1,0.005,1,0.031 GT:PL:GQ 0/1:32,0,58:31 chr1 11090916 . C A 96 . DP=26;VDB=0.0359;AF1=0.5;AC1=1;DP4=0,10,2,14;MQ=59;FQ=98.9;PV4=0.51,5.6e-10,1,0.1 GT:PL:GQ 0/1:126,0,144:99 chr1 11102940 . G A 225 . DP=48;VDB=0.0393;AF1=0.5;AC1=1;DP4=17,8,15,8;MQ=60;FQ=225;PV4=1,0.32,1,0.14 GT:PL:GQ 0/1:255,0,255:99 chr1 11104845 . T C 28 . DP=4;VDB=0.0188;AF1=0.5;AC1=1;DP4=1,1,2,0;MQ=60;FQ=26.9;PV4=1,1,1,1 GT:PL:GQ 0/1:58,0,56:57 chr1 11105106 . C T 38 . DP=10;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,1,3,2;MQ=60;FQ=41;PV4=1,0.00075,1,1 GT:PL:GQ 0/1:68,0,114:71 chr1 11105122 . C T 76 . DP=10;VDB=0.0241;AF1=0.5;AC1=1;DP4=2,1,4,3;MQ=60;FQ=55;PV4=1,2.1e-05,1,0.047 GT:PL:GQ 0/1:106,0,82:85 chr1 11119899 . T C 222 . DP=27;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,20;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 11126941 . C T 48 . DP=14;VDB=0.0161;AF1=0.5;AC1=1;DP4=2,8,0,4;MQ=60;FQ=51;PV4=1,0.22,1,0.45 GT:PL:GQ 0/1:78,0,212:81 chr1 11128001 . A G 95 . DP=17;VDB=0.0014;AF1=0.5;AC1=1;DP4=10,1,5,1;MQ=60;FQ=98;PV4=1,0.056,1,1 GT:PL:GQ 0/1:125,0,196:99 chr1 11128654 . G A 90 . DP=51;VDB=0.0298;AF1=0.5;AC1=1;DP4=18,5,23,4;MQ=60;FQ=93;PV4=0.71,2e-15,1,1 GT:PL:GQ 0/1:120,0,255:99 chr1 11129848 . A G 10.4 . DP=7;VDB=0.0161;AF1=0.5;AC1=1;DP4=0,5,0,2;MQ=60;FQ=13.2;PV4=1,0.47,1,1 GT:PL:GQ 0/1:40,0,101:42 chr1 11132217 . G A 132 . DP=33;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,7,4,13;MQ=59;FQ=135;PV4=0.15,5.6e-06,1,1 GT:PL:GQ 0/1:162,0,244:99 chr1 11134157 . T G 60 . DP=24;VDB=0.0197;AF1=0.5;AC1=1;DP4=13,3,4,4;MQ=60;FQ=63;PV4=0.17,1.4e-07,1,0.11 GT:PL:GQ 0/1:90,0,229:93 chr1 11137778 . C T 84.5 . DP=4;VDB=0.0126;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:117,12,0:21 chr1 11141187 . C G 86 . DP=74;VDB=0.0322;AF1=0.5;AC1=1;DP4=20,21,19,14;MQ=60;FQ=89;PV4=0.49,2.2e-27,1,1 GT:PL:GQ 0/1:116,0,255:99 chr1 11181327 . C T 225 . DP=62;VDB=0.0345;AF1=0.5;AC1=1;DP4=25,8,18,8;MQ=60;FQ=225;PV4=0.77,1,1,0.38 GT:PL:GQ 0/1:255,0,255:99 chr1 11187893 . T C 63 . DP=9;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:96,24,0:45 chr1 11190646 . G A 225 . DP=50;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,10,14,11;MQ=60;FQ=225;PV4=1,0.31,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 11205058 . C T 172 . DP=152;VDB=0.0380;AF1=0.5;AC1=1;DP4=29,41,38,43;MQ=59;FQ=175;PV4=0.52,1.7e-40,0.39,1 GT:PL:GQ 0/1:202,0,255:99 chr1 11288758 . G A 144 . DP=30;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,7,8,2;MQ=60;FQ=147;PV4=0.42,0.13,1,1 GT:PL:GQ 0/1:174,0,255:99 chr1 11301714 . A G 225 . DP=68;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,21,11,9;MQ=60;FQ=225;PV4=0.79,1,1,0.49 GT:PL:GQ 0/1:255,0,255:99 chr1 11317320 . C T 12.3 . DP=6;VDB=0.0188;AF1=0.5;AC1=1;DP4=0,4,0,2;MQ=60;FQ=15.1;PV4=1,0.0075,1,0.3 GT:PL:GQ 0/1:42,0,106:44 chr1 11319587 . A G 5.46 . DP=9;VDB=0.0025;AF1=0.4999;AC1=1;DP4=0,4,0,5;MQ=60;FQ=7.8;PV4=1,1.2e-10,1,1 GT:PL:GQ 0/1:34,0,103:34 chr1 11561593 . G A 222 . DP=53;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,22,28;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 11575375 . T A 222 . DP=36;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,28,7;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 11579470 . G A 222 . DP=72;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,48,21;MQ=60;FQ=-209;PV4=1,0.26,1,0.23 GT:PL:GQ 1/1:255,182,0:99 chr1 11593793 . TGCACACAC TGCACACACGCACGCACACAC 112 . INDEL;DP=12;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,6,2;MQ=28;FQ=-58.5 GT:PL:GQ 1/1:153,24,0:45 chr1 11708736 . T C 225 . DP=44;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,13,10,12;MQ=60;FQ=225;PV4=0.54,1,1,0.12 GT:PL:GQ 0/1:255,0,255:99 chr1 11710561 . T G 175 . DP=58;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,17,14,11;MQ=60;FQ=178;PV4=0.6,3.2e-05,1,1 GT:PL:GQ 0/1:205,0,255:99 chr1 11714368 . T G 179 . DP=23;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,4,17;MQ=60;FQ=-90 GT:PL:GQ 1/1:212,63,0:99 chr1 11740329 . aggcgtgagccacggcg aggcg 88.5 . INDEL;DP=28;VDB=0.0118;AF1=0.5;AC1=1;DP4=13,3,8,2;MQ=50;FQ=91.5;PV4=1,0.023,1.1e-14,1 GT:PL:GQ 0/1:126,0,255:99 chr1 11772303 . A G 69 . DP=41;VDB=0.0190;AF1=0.5;AC1=1;DP4=17,2,20,2;MQ=60;FQ=72;PV4=1,4.9e-24,1,0.21 GT:PL:GQ 0/1:99,0,235:99 chr1 11772526 . A G 175 . DP=33;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,19,2,12;MQ=60;FQ=155;PV4=0.17,0.18,1,1 GT:PL:GQ 0/1:205,0,182:99 chr1 11779762 . C T 225 . DP=47;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,13,11,10;MQ=59;FQ=225;PV4=0.76,0.34,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr1 11782814 . G A 112 . DP=26;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,6,12;MQ=59;FQ=-81 GT:PL:GQ 1/1:145,54,0:99 chr1 11804590 . T G 136 . DP=125;VDB=0.0345;AF1=0.5;AC1=1;DP4=46,21,42,13;MQ=60;FQ=139;PV4=0.42,2.2e-22,0.44,1 GT:PL:GQ 0/1:166,0,255:99 chr1 11807426 . C T 205 . DP=38;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,9,8,6;MQ=59;FQ=208;PV4=1,1,1,1 GT:PL:GQ 0/1:235,0,255:99 chr1 11808706 . T G 4.77 . DP=9;VDB=0.0060;AF1=0.4999;AC1=1;DP4=0,6,0,3;MQ=60;FQ=6.99;PV4=1,2.2e-07,1,0.34 GT:PL:GQ 0/1:33,0,137:33 chr1 11824242 . A C 51.3 . DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:84,15,0:27 chr1 11824303 . T C 198 . DP=37;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,29,6;MQ=60;FQ=-132 GT:PL:GQ 1/1:231,105,0:99 chr1 11824346 . G A 212 . DP=56;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,37,16;MQ=60;FQ=-187 GT:PL:GQ 1/1:245,160,0:99 chr1 11824556 . A G 138 . DP=11;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,3,7;MQ=55;FQ=-57 GT:PL:GQ 1/1:171,30,0:57 chr1 11824575 . T C 25.5 . DP=7;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=54;FQ=-39 GT:PL:GQ 1/1:58,12,0:21 chr1 11824578 . C T 31.5 . DP=5;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=54;FQ=-39 GT:PL:GQ 1/1:64,12,0:21 chr1 11825851 . G C 176 . DP=29;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,5,10,3;MQ=59;FQ=179;PV4=0.7,1,0.14,0.39 GT:PL:GQ 0/1:206,0,255:99 chr1 11826630 . C T 21 . DP=7;VDB=0.0288;AF1=0.5;AC1=1;DP4=0,3,3,1;MQ=60;FQ=24;PV4=0.14,0.0051,1,1 GT:PL:GQ 0/1:51,0,70:54 chr1 11827180 . A G 218 . DP=48;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,30,13;MQ=59;FQ=-156 GT:PL:GQ 1/1:251,129,0:99 chr1 11827304 . A G 222 . DP=76;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,45;MQ=59;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr1 11827355 . A G 81 . DP=46;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,23,5,13;MQ=59;FQ=84;PV4=0.48,7.2e-16,1,1 GT:PL:GQ 0/1:111,0,255:99 chr1 11828238 . G A 79 . DP=32;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,9,6,8;MQ=60;FQ=82;PV4=1,7.8e-06,1,1 GT:PL:GQ 0/1:109,0,250:99 chr1 11828319 . G A 124 . DP=30;VDB=0.0393;AF1=0.5;AC1=1;DP4=5,10,7,6;MQ=60;FQ=127;PV4=0.45,3.7e-09,1,0.27 GT:PL:GQ 0/1:154,0,255:99 chr1 11831615 . C T 222 . DP=43;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,7,7,8;MQ=60;FQ=223;PV4=0.18,1,1,1 GT:PL:GQ 0/1:252,0,255:99 chr1 11831756 . A G 59 . DP=6;VDB=0.0107;AF1=0.5;AC1=1;DP4=0,2,1,2;MQ=60;FQ=20.1;PV4=1,1,1,1 GT:PL:GQ 0/1:89,0,47:50 chr1 11832100 . T A 125 . DP=21;VDB=0.0118;AF1=0.5;AC1=1;DP4=7,2,6,5;MQ=60;FQ=128;PV4=0.37,1e-07,1,1 GT:PL:GQ 0/1:155,0,189:99 chr1 11832289 . C A 75 . DP=27;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,11,3,10;MQ=58;FQ=78;PV4=0.59,1.8e-08,1,0.13 GT:PL:GQ 0/1:105,0,181:99 chr1 11832311 . G C 99 . DP=13;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=58;FQ=74;PV4=1,1,1,1 GT:PL:GQ 0/1:129,0,101:99 chr1 11836441 . T C 171 . DP=27;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,17,7;MQ=60;FQ=-99 GT:PL:GQ 1/1:204,72,0:99 chr1 11836442 . G A 73 . DP=27;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,3,8,5;MQ=60;FQ=76;PV4=0.67,2.1e-14,1,1 GT:PL:GQ 0/1:103,0,214:99 chr1 11836450 . A G 98 . DP=32;VDB=0.0398;AF1=0.5;AC1=1;DP4=10,8,9,4;MQ=60;FQ=101;PV4=0.48,2.8e-08,1,1 GT:PL:GQ 0/1:128,0,255:99 chr1 11836628 . T C 126 . DP=34;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,13,4,14;MQ=59;FQ=129;PV4=0.35,2.1e-06,1,0.029 GT:PL:GQ 0/1:156,0,189:99 chr1 11836682 . C T 199 . DP=19;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,6,3,9;MQ=60;FQ=106;PV4=1,1,1,1 GT:PL:GQ 0/1:229,0,133:99 chr1 11838646 . A C 80 . DP=14;VDB=0.0042;AF1=0.5;AC1=1;DP4=8,0,4,1;MQ=60;FQ=83;PV4=0.38,0.15,1,0.37 GT:PL:GQ 0/1:110,0,140:99 chr1 11838848 . G T 225 . DP=55;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,17,16,16;MQ=59;FQ=225;PV4=0.098,0.49,0.11,1 GT:PL:GQ 0/1:255,0,255:99 chr1 11839850 . CTTT CTT 26.5 . INDEL;DP=7;VDB=0.0140;AF1=0.5;AC1=1;DP4=2,2,2,1;MQ=60;FQ=29.5;PV4=1,0.0087,1,0.18 GT:PL:GQ 0/1:64,0,101:67 chr1 11839966 . G A 22.8 . DP=3;VDB=0.0180;AF1=0.6243;AC1=1;DP4=1,0,0,2;MQ=60;FQ=-23;PV4=0.33,1,1,1 GT:PL:GQ 0/1:52,0,4:7 chr1 11842144 . C G 38 . DP=11;VDB=0.0098;AF1=0.5;AC1=1;DP4=7,1,1,2;MQ=60;FQ=41;PV4=0.15,0.33,1,1 GT:PL:GQ 0/1:68,0,170:71 chr1 11844214 . A T 107 . DP=33;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,4,9,9;MQ=60;FQ=110;PV4=0.46,1.6e-10,1,1 GT:PL:GQ 0/1:137,0,224:99 chr1 11844330 . C T 114 . DP=32;VDB=0.0384;AF1=0.5;AC1=1;DP4=9,8,6,7;MQ=60;FQ=117;PV4=1,9.2e-09,1,0.21 GT:PL:GQ 0/1:144,0,255:99 chr1 11845113 . G A 65.1 . DP=7;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:98,21,0:39 chr1 11845169 . T G 86 . DP=30;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,3,11,3;MQ=60;FQ=89;PV4=1,3.9e-12,1,1 GT:PL:GQ 0/1:116,0,240:99 chr1 11848139 . G A 151 . DP=51;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,15,13,9;MQ=60;FQ=154;PV4=0.57,8.8e-11,1,1 GT:PL:GQ 0/1:181,0,255:99 chr1 11848879 . A G 222 . DP=30;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,23;MQ=60;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 11849447 . A G 181 . DP=21;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,9;MQ=60;FQ=-75 GT:PL:GQ 1/1:214,48,0:93 chr1 11851003 . G C 37 . DP=6;VDB=0.0098;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=36.5;PV4=1,1,1,1 GT:PL:GQ 0/1:67,0,66:66 chr1 11852300 . C T 84 . DP=61;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,7,14,8;MQ=60;FQ=87;PV4=0.23,1.3e-22,1,1 GT:PL:GQ 0/1:114,0,255:99 chr1 11854457 . G A 202 . DP=95;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,64,28;MQ=60;FQ=-282 GT:PL:GQ 1/1:235,255,0:99 chr1 11854755 . G A 225 . DP=42;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,8,17,8;MQ=60;FQ=225;PV4=0.35,0.24,1,0.46 GT:PL:GQ 0/1:255,0,255:99 chr1 11856378 . G A 171 . DP=45;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,10,8,15;MQ=60;FQ=174;PV4=0.24,2.3e-05,1,1 GT:PL:GQ 0/1:201,0,255:99 chr1 11860458 . C T 12.3 . DP=10;VDB=0.0049;AF1=0.5;AC1=1;DP4=0,6,0,4;MQ=60;FQ=15.1;PV4=1,0.0032,1,0.29 GT:PL:GQ 0/1:42,0,121:44 chr1 11879685 . C T 111 . DP=54;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,26,8,15;MQ=60;FQ=114;PV4=0.098,2.9e-17,1,0.5 GT:PL:GQ 0/1:141,0,255:99 chr1 11884555 . A G 185 . DP=42;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,14,26;MQ=59;FQ=-147 GT:PL:GQ 1/1:218,120,0:99 chr1 11888073 . C T 123 . DP=32;VDB=0.0140;AF1=0.5;AC1=1;DP4=21,1,9,1;MQ=60;FQ=126;PV4=0.53,0.2,1,1 GT:PL:GQ 0/1:153,0,217:99 chr1 11888384 . A G 72 . DP=34;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,11,3,12;MQ=59;FQ=75;PV4=0.28,1.9e-08,0.14,1 GT:PL:GQ 0/1:102,0,255:99 chr1 11889468 . A G 83 . DP=12;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=58;FQ=83.5;PV4=1,0.0072,0.19,0.22 GT:PL:GQ 0/1:113,0,114:99 chr1 11896141 . A G 146 . DP=45;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,14,10,9;MQ=59;FQ=149;PV4=0.77,1.8e-13,1,1 GT:PL:GQ 0/1:176,0,255:99 chr1 11897592 . A G 144 . DP=35;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,14,6,11;MQ=59;FQ=147;PV4=0.22,2.2e-06,1,0.43 GT:PL:GQ 0/1:174,0,192:99 chr1 11899033 . G T 140 . DP=77;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,28,11,23;MQ=60;FQ=143;PV4=1,3.4e-26,1,1 GT:PL:GQ 0/1:170,0,255:99 chr1 11900035 . G A 88 . DP=14;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:121,42,0:81 chr1 11982544 . T C 222 . DP=21;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,15,4;MQ=59;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr1 12062205 . A G 136 . DP=39;VDB=0.0373;AF1=0.5;AC1=1;DP4=2,14,4,16;MQ=60;FQ=139;PV4=0.67,1.6e-08,1,1 GT:PL:GQ 0/1:166,0,222:99 chr1 12071657 . C T 50 . DP=8;VDB=0.0141;AF1=0.5;AC1=1;DP4=0,5,1,2;MQ=60;FQ=53;PV4=0.37,0.41,1,0.32 GT:PL:GQ 0/1:80,0,114:83 chr1 12082926 . A G 108 . DP=57;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,26,3,25;MQ=60;FQ=111;PV4=0.61,1.2e-20,1,0.25 GT:PL:GQ 0/1:138,0,214:99 chr1 12175729 . C T 216 . DP=94;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,49,41;MQ=59;FQ=-282 GT:PL:GQ 1/1:249,255,0:99 chr1 12252333 . ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt cTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 50.2 . INDEL;DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:89,6,0:10 chr1 12304694 . A G 172 . DP=23;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,10,2,9;MQ=60;FQ=163;PV4=1,0.14,1,1 GT:PL:GQ 0/1:202,0,190:99 chr1 12316637 . C T 5.46 . DP=8;VDB=0.0244;AF1=0.4999;AC1=1;DP4=0,2,0,4;MQ=60;FQ=7.77;PV4=1,4.6e-06,1,0.27 GT:PL:GQ 0/1:34,0,55:34 chr1 12321062 . G T 3.54 . DP=8;VDB=0.0069;AF1=0.4998;AC1=1;DP4=6,0,1,1;MQ=60;FQ=5.47;PV4=0.25,0.0052,1,1 GT:PL:GQ 0/1:31,0,126:30 chr1 12401868 . A C 144 . DP=42;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,38,3;MQ=60;FQ=-150 GT:PL:GQ 1/1:177,123,0:99 chr1 12418700 . T C 99 . DP=24;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,23;MQ=60;FQ=-96 GT:PL:GQ 1/1:132,69,0:99 chr1 12567232 . A G 222 . DP=41;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,24,16;MQ=56;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 12628471 . A C 91 . DP=37;VDB=0.0384;AF1=0.5;AC1=1;DP4=5,14,4,12;MQ=60;FQ=94;PV4=1,1.4e-14,1,1 GT:PL:GQ 0/1:121,0,255:99 chr1 12638964 . T C 222 . DP=39;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,29;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 12639168 . A G 222 . DP=25;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,18,7;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 12639226 . C T 110 . DP=51;VDB=0.0271;AF1=0.5;AC1=1;DP4=21,11,13,5;MQ=60;FQ=113;PV4=0.76,2.8e-14,1,1 GT:PL:GQ 0/1:140,0,255:99 chr1 12639289 . C T 127 . DP=75;VDB=0.0399;AF1=0.5;AC1=1;DP4=27,9,26,9;MQ=60;FQ=130;PV4=1,1.3e-26,1,1 GT:PL:GQ 0/1:157,0,255:99 chr1 12640461 . C G 51 . DP=16;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,2,6,1;MQ=60;FQ=54;PV4=1,3.2e-05,1,0.25 GT:PL:GQ 0/1:81,0,192:84 chr1 12640650 . C T 102 . DP=40;VDB=0.0190;AF1=0.5;AC1=1;DP4=8,11,2,19;MQ=60;FQ=105;PV4=0.028,3.2e-15,1,1 GT:PL:GQ 0/1:132,0,255:99 chr1 12776344 . A T 217 . DP=35;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,21,14;MQ=60;FQ=-132 GT:PL:GQ 1/1:250,105,0:99 chr1 12779560 . T C 189 . DP=87;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,37,48;MQ=59;FQ=-282 GT:PL:GQ 1/1:222,255,0:99 chr1 12779618 . T C 198 . DP=50;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,10,39;MQ=60;FQ=-175 GT:PL:GQ 1/1:231,148,0:99 chr1 12785093 . T G 63 . DP=10;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:96,30,0:57 chr1 12785494 . G T 147 . DP=125;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,31,55;MQ=60;FQ=-282 GT:PL:GQ 1/1:180,255,0:99 chr1 12820870 . T C 142 . DP=39;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,5,34;MQ=60;FQ=-144 GT:PL:GQ 1/1:175,117,0:99 chr1 12835868 . T C 222 . DP=68;VDB=0.0271;AF1=1;AC1=2;DP4=0,1,12,52;MQ=60;FQ=-188;PV4=1,1,0.44,1 GT:PL:GQ 1/1:255,161,0:99 chr1 12837463 . C T 11.3 . DP=4;VDB=0.0145;AF1=0.5;AC1=1;DP4=1,1,1,1;MQ=54;FQ=14.1;PV4=1,0.15,0.21,0.47 GT:PL:GQ 0/1:41,0,60:43 chr1 12837634 . T A 162 . DP=25;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,13,12;MQ=59;FQ=-102 GT:PL:GQ 1/1:195,75,0:99 chr1 12837679 . C T 18.1 . DP=24;VDB=0.0325;AF1=0.5;AC1=1;DP4=8,9,1,6;MQ=59;FQ=21;PV4=0.19,1.2e-10,1,0.053 GT:PL:GQ 0/1:48,0,255:51 chr1 12854530 . C G 222 . DP=96;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,38,57;MQ=57;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 12888601 . GCCC GCCCC 141 . INDEL;DP=9;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,8;MQ=49;FQ=-61.5 GT:PL:GQ 1/1:182,27,0:51 chr1 12907798 . A C 9.52 . DP=102;VDB=0.0393;AF1=0.5;AC1=1;DP4=36,37,18,5;MQ=52;FQ=12.3;PV4=0.017,2.6e-20,3.5e-34,0.097 GT:PL:GQ 0/1:39,0,255:41 chr1 12907802 . C T 14.2 . DP=100;VDB=0.0398;AF1=0.5;AC1=1;DP4=32,36,18,5;MQ=52;FQ=17.1;PV4=0.014,8.7e-24,4.8e-26,0.1 GT:PL:GQ 0/1:44,0,255:47 chr1 12907803 . C T 18.1 . DP=103;VDB=0.0398;AF1=0.5;AC1=1;DP4=32,39,19,5;MQ=52;FQ=21;PV4=0.0045,2.6e-22,1.5e-28,0.054 GT:PL:GQ 0/1:48,0,255:51 chr1 12907837 . C T 94 . DP=101;VDB=0.0271;AF1=0.5;AC1=1;DP4=25,44,14,15;MQ=52;FQ=97;PV4=0.37,1.4e-19,9.5e-20,1 GT:PL:GQ 0/1:124,0,255:99 chr1 12907885 . T C 161 . DP=114;VDB=0.0398;AF1=0.5;AC1=1;DP4=27,31,14,38;MQ=51;FQ=164;PV4=0.048,3.8e-40,1,0.46 GT:PL:GQ 0/1:191,0,255:99 chr1 12908236 . G T 20 . DP=20;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,10,0,9;MQ=39;FQ=23;PV4=1,3.8e-14,0.00046,0.12 GT:PL:GQ 0/1:50,0,155:53 chr1 12908243 . A G 29 . DP=17;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,10,0,7;MQ=41;FQ=32;PV4=1,7.1e-08,0.0029,0.43 GT:PL:GQ 0/1:59,0,146:62 chr1 13183032 . C T 102 . DP=52;VDB=0.0244;AF1=0.5;AC1=1;DP4=15,14,13,10;MQ=55;FQ=105;PV4=0.78,6.3e-19,0.47,1 GT:PL:GQ 0/1:132,0,255:99 chr1 13183439 . T C 225 . DP=74;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,7,29,24;MQ=54;FQ=175;PV4=0.6,1,0.0023,1 GT:PL:GQ 0/1:255,0,202:99 chr1 13183511 . T C 89 . DP=72;VDB=0.0392;AF1=0.5;AC1=1;DP4=27,21,9,14;MQ=51;FQ=92;PV4=0.21,8.6e-14,7.5e-10,0.39 GT:PL:GQ 0/1:119,0,255:99 chr1 13183966 . G T 27 . DP=24;VDB=0.0006;AF1=0.5;AC1=1;DP4=3,12,2,7;MQ=37;FQ=30;PV4=1,2.1e-10,0.026,1 GT:PL:GQ 0/1:57,0,226:60 chr1 13183973 . G A 7.8 . DP=22;VDB=0.0004;AF1=0.5;AC1=1;DP4=3,14,2,3;MQ=38;FQ=10.4;PV4=0.55,3.4e-09,0.14,0.031 GT:PL:GQ 0/1:37,0,214:39 chr1 13695974 . T C 37 . DP=9;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,1,8;MQ=14;FQ=-54 GT:PL:GQ 1/1:70,27,0:51 chr1 13696022 . A G 29 . DP=12;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,12;MQ=14;FQ=-63 GT:PL:GQ 1/1:62,36,0:61 chr1 13696029 . A G 29 . DP=12;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,12;MQ=14;FQ=-63 GT:PL:GQ 1/1:62,36,0:61 chr1 13696047 . A T 22.1 . DP=8;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,8;MQ=14;FQ=-51 GT:PL:GQ 1/1:55,24,0:41 chr1 13696054 . G A 15.3 . DP=6;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,6;MQ=14;FQ=-45 GT:PL:GQ 1/1:48,18,0:28 chr1 13802325 . T C 109 . DP=9;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,6,2;MQ=60;FQ=-51 GT:PL:GQ 1/1:142,24,0:45 chr1 13802437 . G A 131 . DP=38;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,9,11,6;MQ=59;FQ=134;PV4=0.74,7.1e-14,1,1 GT:PL:GQ 0/1:161,0,255:99 chr1 13802617 . T C 34 . DP=17;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,6,2,3;MQ=59;FQ=37;PV4=1,5.8e-05,1,1 GT:PL:GQ 0/1:64,0,222:67 chr1 13910417 . C T 180 . DP=101;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,49,37;MQ=60;FQ=-282 GT:PL:GQ 1/1:213,255,0:99 chr1 13933855 . A G 56 . DP=39;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,16,2,19;MQ=60;FQ=59;PV4=1,1.2e-18,1,1 GT:PL:GQ 0/1:86,0,199:89 chr1 13936822 . G T 80 . DP=18;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:113,27,0:51 chr1 13937089 . G T 222 . DP=14;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,5,9;MQ=60;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr1 13940864 . C G 222 . DP=76;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,34,35;MQ=60;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr1 14143003 . A G 169 . DP=91;VDB=0.0399;AF1=0.5;AC1=1;DP4=20,27,21,20;MQ=60;FQ=172;PV4=0.52,6.9e-23,1,1 GT:PL:GQ 0/1:199,0,255:99 chr1 14149601 . C T 123 . DP=64;VDB=0.0322;AF1=0.5;AC1=1;DP4=23,12,22,6;MQ=60;FQ=126;PV4=0.4,9.2e-12,1,1 GT:PL:GQ 0/1:153,0,255:99 chr1 14149622 . T C 122 . DP=70;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,17,24,6;MQ=60;FQ=125;PV4=0.045,6.9e-18,1,1 GT:PL:GQ 0/1:152,0,255:99 chr1 15390200 . A G 225 . DP=64;VDB=0.0118;AF1=0.5;AC1=1;DP4=6,25,3,30;MQ=59;FQ=225;PV4=0.3,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 15427982 . G A 155 . DP=33;VDB=0.0216;AF1=0.5;AC1=1;DP4=18,3,8,3;MQ=59;FQ=158;PV4=0.39,1,1,0.22 GT:PL:GQ 0/1:185,0,248:99 chr1 15428358 . T C 46.5 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:79,12,0:21 chr1 15438990 . G A 82 . DP=20;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,4,6,3;MQ=52;FQ=85;PV4=1,7.7e-08,1,1 GT:PL:GQ 0/1:112,0,186:99 chr1 15490865 . T A 159 . DP=92;VDB=0.0271;AF1=0.5;AC1=1;DP4=30,11,34,13;MQ=59;FQ=162;PV4=1,1.3e-13,1,1 GT:PL:GQ 0/1:189,0,255:99 chr1 15490962 . A G 133 . DP=95;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,34,16,26;MQ=60;FQ=136;PV4=0.67,1.2e-34,1,1 GT:PL:GQ 0/1:163,0,255:99 chr1 15495110 . A G 172 . DP=62;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,17,13,17;MQ=60;FQ=175;PV4=1,2.2e-18,0.16,1 GT:PL:GQ 0/1:202,0,255:99 chr1 15497727 . T C 222 . DP=39;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,27,12;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 15497844 . T A 125 . DP=23;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,1,20;MQ=60;FQ=-90 GT:PL:GQ 1/1:158,63,0:99 chr1 15541537 . C T 197 . DP=17;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,1;MQ=60;FQ=-75 GT:PL:GQ 1/1:230,48,0:93 chr1 15546077 . G A 225 . DP=114;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,36,21,38;MQ=60;FQ=225;PV4=0.84,0.045,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 15668276 . G A 95 . DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,5,14,7;MQ=59;FQ=98;PV4=0.5,3.2e-21,1,1 GT:PL:GQ 0/1:125,0,255:99 chr1 15671483 . G A 57 . DP=13;VDB=0.0019;AF1=0.5;AC1=1;DP4=5,0,8,0;MQ=60;FQ=59.9;PV4=1,0.00075,1,1 GT:PL:GQ 0/1:87,0,102:90 chr1 15709669 . C T 58 . DP=33;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,14,5,7;MQ=60;FQ=61;PV4=0.45,1.6e-13,1,1 GT:PL:GQ 0/1:88,0,255:91 chr1 15714831 . C T 28 . DP=19;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:61,24,0:44 chr1 15723843 . G A 116 . DP=44;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,8,18,4;MQ=60;FQ=119;PV4=0.19,1.2e-18,1,1 GT:PL:GQ 0/1:146,0,255:99 chr1 15724033 . A G 102 . DP=25;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,13,0,8;MQ=59;FQ=105;PV4=1,1,0.096,1 GT:PL:GQ 0/1:132,0,209:99 chr1 15754484 . T C 74 . DP=15;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,3,5,3;MQ=60;FQ=77;PV4=1,1.4e-06,1,0.34 GT:PL:GQ 0/1:104,0,151:99 chr1 15769876 . GCC GCCC 214 . INDEL;DP=32;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,25,7;MQ=60;FQ=-131 GT:PL:GQ 1/1:255,96,0:99 chr1 15783117 . CA CAA 214 . INDEL;DP=84;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,50,19;MQ=47;FQ=-243 GT:PL:GQ 1/1:255,208,0:99 chr1 15788269 . A C 208 . DP=29;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,16,13;MQ=57;FQ=-114 GT:PL:GQ 1/1:241,87,0:99 chr1 15812432 . A G 222 . DP=45;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,29,15;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 15813751 . C T 182 . DP=52;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,38,11;MQ=60;FQ=-175 GT:PL:GQ 1/1:215,148,0:99 chr1 16096893 . C T 20.6 . DP=6;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:53,12,0:21 chr1 16096934 . C T 69 . DP=24;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,14,1;MQ=60;FQ=-72 GT:PL:GQ 1/1:102,45,0:87 chr1 16097221 . C A 36 . DP=12;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,6,0,5;MQ=58;FQ=39;PV4=1,0.00056,1,0.39 GT:PL:GQ 0/1:66,0,117:69 chr1 16097237 . G A 26 . DP=4;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:58,9,0:16 chr1 16256007 . T C 222 . DP=72;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,42,24;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr1 16259813 . A G 222 . DP=43;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,22,19;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 16265422 . A G 220 . DP=63;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,11,51;MQ=60;FQ=-214 GT:PL:GQ 1/1:253,187,0:99 chr1 16271260 . G A 190 . DP=37;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,21,15;MQ=59;FQ=-135 GT:PL:GQ 1/1:223,108,0:99 chr1 16272250 . A G 222 . DP=49;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,30,16;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 16272409 . C T 225 . DP=74;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,10,31,14;MQ=60;FQ=225;PV4=0.6,0.14,0.23,1 GT:PL:GQ 0/1:255,0,255:99 chr1 16330816 . C T 66 . DP=33;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,10,6,5;MQ=59;FQ=69;PV4=1,1e-08,0.085,1 GT:PL:GQ 0/1:96,0,255:99 chr1 16330901 . C T 21 . DP=12;VDB=0.0008;AF1=0.5;AC1=1;DP4=1,5,0,6;MQ=58;FQ=24;PV4=1,0.00039,0.17,1 GT:PL:GQ 0/1:51,0,126:54 chr1 16332571 . C T 69 . DP=72;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,27,7,17;MQ=60;FQ=72;PV4=0.44,1.5e-24,0.084,1 GT:PL:GQ 0/1:99,0,255:99 chr1 16342237 . A G 65 . DP=19;VDB=0.0325;AF1=0.5;AC1=1;DP4=4,6,1,7;MQ=60;FQ=68;PV4=0.31,0.00015,1,0.48 GT:PL:GQ 0/1:95,0,202:98 chr1 16344360 . A G 149 . DP=44;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,11,13,11;MQ=59;FQ=152;PV4=0.37,2.2e-06,0.2,1 GT:PL:GQ 0/1:179,0,247:99 chr1 16344402 . G A 88 . DP=35;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,11,5,11;MQ=59;FQ=91;PV4=1,2.4e-12,0.16,1 GT:PL:GQ 0/1:118,0,255:99 chr1 16344494 . G A 87 . DP=22;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,5,6,6;MQ=60;FQ=90;PV4=1,7.6e-09,1,1 GT:PL:GQ 0/1:117,0,171:99 chr1 16344625 . C G 223 . DP=23;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,7,6,8;MQ=60;FQ=131;PV4=0.4,1,1,1 GT:PL:GQ 0/1:253,0,158:99 chr1 16344683 . C T 57 . DP=15;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,4,1,7;MQ=60;FQ=60;PV4=0.54,2.1e-07,1,0.38 GT:PL:GQ 0/1:87,0,153:90 chr1 16344730 . T C 5.46 . DP=5;VDB=0.0182;AF1=0.4999;AC1=1;DP4=2,1,0,2;MQ=60;FQ=7.8;PV4=0.4,0.014,1,0.068 GT:PL:GQ 0/1:34,0,90:34 chr1 16345619 . T C 88 . DP=31;VDB=0.0190;AF1=0.5;AC1=1;DP4=16,2,10,2;MQ=60;FQ=91;PV4=1,3e-07,1,1 GT:PL:GQ 0/1:118,0,224:99 chr1 16345735 . C T 164 . DP=119;VDB=0.0365;AF1=0.5;AC1=1;DP4=41,28,33,16;MQ=60;FQ=167;PV4=0.44,1.1e-39,1,0.36 GT:PL:GQ 0/1:194,0,255:99 chr1 16349080 . G A 37 . DP=9;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,1,7,0;MQ=60;FQ=23;PV4=0.22,5.9e-05,1,0.41 GT:PL:GQ 0/1:67,0,50:53 chr1 16351275 . A G 46 . DP=25;VDB=0.0042;AF1=0.5;AC1=1;DP4=9,0,14,1;MQ=60;FQ=49;PV4=1,3.2e-12,1,1 GT:PL:GQ 0/1:76,0,134:79 chr1 16352937 . G A 97 . DP=33;VDB=0.0244;AF1=0.5;AC1=1;DP4=16,0,13,4;MQ=59;FQ=100;PV4=0.1,5.7e-12,0.083,1 GT:PL:GQ 0/1:127,0,163:99 chr1 16354642 . AT ATT 188 . INDEL;DP=37;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,16,2,14;MQ=59;FQ=145;PV4=0.6,1,0.48,1 GT:PL:GQ 0/1:226,0,180:99 chr1 16358148 . T C 88 . DP=68;VDB=0.0298;AF1=0.5;AC1=1;DP4=33,10,20,3;MQ=59;FQ=91;PV4=0.52,2.7e-14,1,1 GT:PL:GQ 0/1:118,0,255:99 chr1 16358520 . T C 10.4 . DP=7;VDB=0.0060;AF1=0.5;AC1=1;DP4=3,1,3,0;MQ=50;FQ=13.2;PV4=1,0.00062,2e-05,1 GT:PL:GQ 0/1:40,0,100:42 chr1 16358685 . C G 225 . DP=71;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,20,20,15;MQ=59;FQ=225;PV4=0.16,0.026,0.43,0.18 GT:PL:GQ 0/1:255,0,255:99 chr1 16358775 . C G 70 . DP=34;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,17,1,13;MQ=60;FQ=73;PV4=1,1.3e-10,1,0.38 GT:PL:GQ 0/1:100,0,238:99 chr1 16358932 . T C 96 . DP=75;VDB=0.0345;AF1=0.5;AC1=1;DP4=31,11,21,8;MQ=60;FQ=99;PV4=1,2.1e-17,1,1 GT:PL:GQ 0/1:126,0,255:99 chr1 16359052 . A G 105 . DP=38;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,21;MQ=60;FQ=-90 GT:PL:GQ 1/1:138,63,0:99 chr1 16359106 . C T 49 . DP=6;VDB=0.0033;AF1=0.5032;AC1=1;DP4=0,1,0,5;MQ=60;FQ=-8.63;PV4=1,0.022,1,1 GT:PL:GQ 0/1:79,0,19:22 chr1 16359123 . A G 43.8 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:75,6,0:10 chr1 16361875 . A G 58.1 . DP=6;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,6,0;MQ=29;FQ=-45 GT:PL:GQ 1/1:91,18,0:33 chr1 16361916 . G A 98 . DP=11;VDB=0.0325;AF1=0.5;AC1=1;DP4=2,1,7,1;MQ=39;FQ=32;PV4=0.49,0.075,0.071,1 GT:PL:GQ 0/1:128,0,59:62 chr1 16362543 . C G 59 . DP=20;VDB=0.0008;AF1=0.5;AC1=1;DP4=9,1,10,0;MQ=45;FQ=62;PV4=1,0.078,6.2e-10,1 GT:PL:GQ 0/1:89,0,182:92 chr1 16362621 . G A 208 . DP=100;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,64,32;MQ=52;FQ=-282 GT:PL:GQ 1/1:241,255,0:99 chr1 16362661 . A C 170 . DP=132;VDB=0.0345;AF1=0.5;AC1=1;DP4=40,29,34,24;MQ=53;FQ=173;PV4=1,1.4e-46,6.3e-06,1 GT:PL:GQ 0/1:200,0,255:99 chr1 16362712 . C T 113 . DP=114;VDB=0.0322;AF1=0.5;AC1=1;DP4=27,31,20,30;MQ=54;FQ=116;PV4=0.56,3.6e-36,5.1e-05,1 GT:PL:GQ 0/1:143,0,255:99 chr1 16362719 . C T 128 . DP=105;VDB=0.0345;AF1=0.5;AC1=1;DP4=22,31,18,29;MQ=54;FQ=131;PV4=0.84,3.9e-26,6.7e-05,1 GT:PL:GQ 0/1:158,0,255:99 chr1 16371067 . G T 225 . DP=49;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,7,14,11;MQ=60;FQ=225;PV4=0.55,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 16371932 . A C 56 . DP=4;VDB=0.0059;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:88,9,0:16 chr1 16372003 . G C 145 . DP=17;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,0,10,1;MQ=60;FQ=55;PV4=1,1,1,0.25 GT:PL:GQ 0/1:175,0,82:85 chr1 16373124 . A G 213 . DP=62;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,43,16;MQ=58;FQ=-205 GT:PL:GQ 1/1:246,178,0:99 chr1 16373199 . CCTTCT CCT 214 . INDEL;DP=62;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,33;MQ=57;FQ=-210 GT:PL:GQ 1/1:255,175,0:99 chr1 16373282 . A G 72 . DP=18;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,17;MQ=59;FQ=-78 GT:PL:GQ 1/1:105,51,0:99 chr1 16374533 . G C 211 . DP=33;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,18;MQ=60;FQ=-120 GT:PL:GQ 1/1:244,93,0:99 chr1 16374622 . C G 159 . DP=15;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,6,9;MQ=58;FQ=-72 GT:PL:GQ 1/1:192,45,0:87 chr1 16374656 . A G 110 . DP=11;VDB=0.0325;AF1=1;AC1=2;DP4=0,0,4,6;MQ=58;FQ=-57 GT:PL:GQ 1/1:143,30,0:57 chr1 16374994 . C T 102 . DP=10;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,3;MQ=36;FQ=-57 GT:PL:GQ 1/1:135,30,0:57 chr1 16376191 . C T 146 . DP=22;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,21,1;MQ=29;FQ=-93 GT:PL:GQ 1/1:179,66,0:99 chr1 16376230 . A AT 62.5 . INDEL;DP=47;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,0;MQ=29;FQ=-79.5 GT:PL:GQ 1/1:103,45,0:87 chr1 16376278 . G A 212 . DP=65;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,42,21;MQ=42;FQ=-217 GT:PL:GQ 1/1:245,190,0:99 chr1 16376319 . T C 222 . DP=102;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,51,46;MQ=49;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 16376458 . T C 42 . DP=24;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,22;MQ=58;FQ=-93 GT:PL:GQ 1/1:75,66,0:99 chr1 16377108 . G C 225 . DP=112;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,33,25,25;MQ=59;FQ=225;PV4=0.71,1,1,0.38 GT:PL:GQ 0/1:255,0,255:99 chr1 16378649 . C G 28 . DP=12;VDB=0.0008;AF1=0.5;AC1=1;DP4=4,1,7,0;MQ=58;FQ=31;PV4=0.42,8.5e-09,1,0.46 GT:PL:GQ 0/1:58,0,129:61 chr1 16379008 . C T 25 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:57,9,0:15 chr1 16380196 . T C 222 . DP=52;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,17,32;MQ=59;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 16382877 . A G 222 . DP=204;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,105,89;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 16382880 . T A 222 . DP=207;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,100,100;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 16383267 . A G 222 . DP=23;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,15,7;MQ=54;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 16383329 . TCCCCCC TCCCCCCC 93.5 . INDEL;DP=24;VDB=0.0393;AF1=1;AC1=2;DP4=0,1,13,7;MQ=45;FQ=-81.5;PV4=0.38,1,0.13,0.36 GT:PL:GQ 1/1:134,47,0:91 chr1 16383348 . C T 137 . DP=18;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,8,6;MQ=35;FQ=-69 GT:PL:GQ 1/1:170,42,0:81 chr1 16383448 . A C 188 . DP=52;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,19,32;MQ=36;FQ=-181 GT:PL:GQ 1/1:221,154,0:99 chr1 16383515 . C T 47 . DP=9;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,8;MQ=19;FQ=-51 GT:PL:GQ 1/1:80,24,0:45 chr1 16383574 . A T 13.2 . DP=5;VDB=0.0050;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=35;FQ=15.6;PV4=1,0.00065,0.25,0.34 GT:PL:GQ 0/1:43,0,52:45 chr1 16383605 . A G 20 . DP=10;VDB=0.0033;AF1=0.5;AC1=1;DP4=4,0,6,0;MQ=32;FQ=23;PV4=1,5.2e-09,0.32,0.038 GT:PL:GQ 0/1:50,0,77:53 chr1 16383668 . T G 168 . DP=48;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,34,12;MQ=44;FQ=-165 GT:PL:GQ 1/1:201,138,0:99 chr1 16383742 . C G 122 . DP=76;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,17,17,29;MQ=50;FQ=125;PV4=0.81,2.2e-34,0.16,1 GT:PL:GQ 0/1:152,0,255:99 chr1 16383808 . G C 85 . DP=23;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,10,3,8;MQ=49;FQ=88;PV4=0.64,3e-08,0.043,1 GT:PL:GQ 0/1:115,0,208:99 chr1 16385175 . G A 30 . DP=7;VDB=0.0219;AF1=0.5;AC1=1;DP4=2,2,0,3;MQ=38;FQ=33;PV4=0.43,1,1,0.45 GT:PL:GQ 0/1:60,0,88:63 chr1 16385248 . C T 14.9 . DP=2;VDB=0.0100;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:46,6,0:10 chr1 16385250 . A G 17.8 . DP=2;VDB=0.0100;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:49,6,0:10 chr1 16385797 . C G 134 . DP=12;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,10,0;MQ=52;FQ=-57 GT:PL:GQ 1/1:167,30,0:57 chr1 16385815 . G A 159 . DP=30;VDB=0.0042;AF1=1;AC1=2;DP4=2,0,20,4;MQ=52;FQ=-69;PV4=1,3.1e-05,1,1 GT:PL:GQ 1/1:192,42,0:81 chr1 16385980 . G A 184 . DP=65;VDB=0.0392;AF1=1;AC1=2;DP4=0,2,13,46;MQ=55;FQ=-173;PV4=1,3.3e-06,1,1 GT:PL:GQ 1/1:217,146,0:99 chr1 16386008 . T C 90 . DP=48;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,1,44;MQ=50;FQ=-162 GT:PL:GQ 1/1:123,135,0:99 chr1 16386416 . G A 152 . DP=9;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,8,1;MQ=36;FQ=-54 GT:PL:GQ 1/1:185,27,0:51 chr1 16386447 . G C 98 . DP=10;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,3;MQ=35;FQ=-57 GT:PL:GQ 1/1:131,30,0:57 chr1 16388556 . C T 15.9 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=26;FQ=-33 GT:PL:GQ 1/1:47,6,0:10 chr1 16388580 . C T 147 . DP=7;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,4,3;MQ=44;FQ=-48 GT:PL:GQ 1/1:180,21,0:39 chr1 16388646 . T C 158 . DP=13;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,6,7;MQ=53;FQ=-66 GT:PL:GQ 1/1:191,39,0:75 chr1 16388737 . G A 90.1 . DP=7;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,1,6;MQ=52;FQ=-48 GT:PL:GQ 1/1:123,21,0:39 chr1 16388766 . C T 31.5 . DP=4;VDB=0.0041;AF1=1;AC1=2;DP4=0,0,1,3;MQ=50;FQ=-39 GT:PL:GQ 1/1:64,12,0:21 chr1 16451767 . G A 222 . DP=58;VDB=0.0365;AF1=1;AC1=2;DP4=0,1,18,38;MQ=59;FQ=-177;PV4=1,1,1,0.24 GT:PL:GQ 1/1:255,150,0:99 chr1 16464673 . G A 145 . DP=43;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,19,13;MQ=60;FQ=-123 GT:PL:GQ 1/1:178,96,0:99 chr1 16474839 . ACCCCC ACCCC 94.5 . INDEL;DP=48;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,42,5;MQ=60;FQ=-176 GT:PL:GQ 1/1:135,141,0:99 chr1 16475123 . C T 222 . DP=78;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,36,40;MQ=60;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr1 16475126 . C T 222 . DP=78;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,37,40;MQ=60;FQ=-259 GT:PL:GQ 1/1:255,232,0:99 chr1 16525056 . G T 48 . DP=22;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,3,6,2;MQ=60;FQ=51;PV4=1,3.6e-09,1,1 GT:PL:GQ 0/1:78,0,232:81 chr1 16525549 . C T 26 . DP=6;VDB=0.0184;AF1=0.5;AC1=1;DP4=4,0,2,0;MQ=60;FQ=29;PV4=1,1,1,1 GT:PL:GQ 0/1:56,0,99:59 chr1 16528233 . G A 91 . DP=17;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,1,10,1;MQ=59;FQ=82.7;PV4=1,2e-06,0.26,1 GT:PL:GQ 0/1:121,0,110:99 chr1 16528843 . A G 30 . DP=6;VDB=0.0042;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=18.9;PV4=1,0.32,1,0.06 GT:PL:GQ 0/1:60,0,46:49 chr1 16529117 . T C 18.1 . DP=12;VDB=0.0049;AF1=0.5;AC1=1;DP4=2,6,1,3;MQ=60;FQ=21;PV4=1,6.7e-06,1,1 GT:PL:GQ 0/1:48,0,190:51 chr1 16532803 . G A 59 . DP=32;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,9,7,5;MQ=60;FQ=62;PV4=1,2.8e-14,1,1 GT:PL:GQ 0/1:89,0,255:92 chr1 16532848 . A G 213 . DP=43;VDB=0.0298;AF1=0.5;AC1=1;DP4=16,10,11,6;MQ=59;FQ=216;PV4=1,1,0.11,0.39 GT:PL:GQ 0/1:243,0,255:99 chr1 16533022 . C T 85 . DP=38;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,16,3,16;MQ=60;FQ=88;PV4=1,3.7e-13,1,1 GT:PL:GQ 0/1:115,0,208:99 chr1 16534002 . C G 50 . DP=27;VDB=0.0244;AF1=0.5;AC1=1;DP4=9,4,11,3;MQ=60;FQ=53;PV4=0.68,2.7e-14,1,1 GT:PL:GQ 0/1:80,0,235:83 chr1 16534255 . C G 47 . DP=23;VDB=0.0053;AF1=0.5;AC1=1;DP4=2,10,0,10;MQ=60;FQ=50;PV4=0.48,2.9e-05,1,0.27 GT:PL:GQ 0/1:77,0,213:80 chr1 16534646 . C G 86 . DP=35;VDB=0.0384;AF1=0.5;AC1=1;DP4=5,14,2,11;MQ=59;FQ=89;PV4=0.67,1.7e-11,1,1 GT:PL:GQ 0/1:116,0,255:99 chr1 16534730 . G A 17.1 . DP=8;VDB=0.0161;AF1=0.5;AC1=1;DP4=1,3,1,3;MQ=60;FQ=20.1;PV4=1,0.029,1,1 GT:PL:GQ 0/1:47,0,86:50 chr1 16543175 . A C 222 . DP=33;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,28;MQ=59;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr1 16559541 . C G 55 . DP=20;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,8,0,11;MQ=59;FQ=58;PV4=0.45,2.8e-08,0.19,1 GT:PL:GQ 0/1:85,0,162:88 chr1 16562968 . C A 28 . DP=5;VDB=0.0060;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=24.1;PV4=1,1,1,1 GT:PL:GQ 0/1:58,0,52:54 chr1 16577908 . G C 159 . DP=71;VDB=0.0322;AF1=0.5;AC1=1;DP4=21,16,22,11;MQ=60;FQ=162;PV4=0.47,1.6e-17,0.15,1 GT:PL:GQ 0/1:189,0,255:99 chr1 16621183 . C T 73 . DP=32;VDB=0.0081;AF1=0.5;AC1=1;DP4=12,3,12,3;MQ=60;FQ=76;PV4=1,3.3e-13,1,1 GT:PL:GQ 0/1:103,0,240:99 chr1 16731510 . C G 205 . DP=34;VDB=0.0398;AF1=0.5;AC1=1;DP4=10,8,6,8;MQ=60;FQ=208;PV4=0.72,0.0012,1,1 GT:PL:GQ 0/1:235,0,255:99 chr1 16731646 . T C 126 . DP=16;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:159,45,0:87 chr1 16736132 . T C 118 . DP=14;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,2,5,5;MQ=58;FQ=59;PV4=1,3.5e-05,0.27,1 GT:PL:GQ 0/1:148,0,86:89 chr1 16736546 . C T 131 . DP=18;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,7,1,8;MQ=60;FQ=134;PV4=1,0.36,1,1 GT:PL:GQ 0/1:161,0,177:99 chr1 16769949 . G A 48 . DP=6;VDB=0.0006;AF1=0.502;AC1=1;DP4=1,0,5,0;MQ=60;FQ=-6.96;PV4=1,0.019,1,1 GT:PL:GQ 0/1:78,0,21:24 chr1 16775582 . C T 29 . DP=37;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,5,9,5;MQ=59;FQ=32;PV4=0.46,2.2e-14,1,1 GT:PL:GQ 0/1:59,0,255:62 chr1 16778265 . G T 51 . DP=11;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,0,7,1;MQ=60;FQ=35.9;PV4=1,1.3e-05,1,1 GT:PL:GQ 0/1:81,0,63:66 chr1 16803267 . T C 54.3 . DP=5;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,5,0;MQ=29;FQ=-42 GT:PL:GQ 1/1:87,15,0:27 chr1 16862454 . T G 225 . DP=508;VDB=0.0400;AF1=0.5;AC1=1;DP4=145,107,159,81;MQ=35;FQ=225;PV4=0.051,0.37,1,0.12 GT:PL:GQ 0/1:255,0,255:99 chr1 16862708 . T G 27 . DP=32;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,12,1,14;MQ=33;FQ=30;PV4=1,1.6e-16,3.6e-05,0.046 GT:PL:GQ 0/1:57,0,146:60 chr1 16863198 . G C 8.64 . DP=17;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,2,6,0;MQ=45;FQ=11.3;PV4=0.51,1.5e-07,0.00014,0.49 GT:PL:GQ 0/1:38,0,204:40 chr1 16863213 . C G 21 . DP=27;VDB=0.0216;AF1=0.5;AC1=1;DP4=13,3,10,0;MQ=44;FQ=24;PV4=0.26,0.35,4e-08,0.46 GT:PL:GQ 0/1:51,0,233:54 chr1 16863229 . C T 10.4 . DP=38;VDB=0.0244;AF1=0.5;AC1=1;DP4=21,3,12,0;MQ=47;FQ=13.2;PV4=0.54,2.3e-09,3.2e-09,1 GT:PL:GQ 0/1:40,0,254:42 chr1 16863233 . A C 6.98 . DP=43;VDB=0.0298;AF1=0.4999;AC1=1;DP4=23,3,15,0;MQ=47;FQ=9.53;PV4=0.29,3.6e-12,4.7e-14,1 GT:PL:GQ 0/1:36,0,255:37 chr1 16863238 . T C 51 . DP=47;VDB=0.0190;AF1=0.5;AC1=1;DP4=25,3,17,0;MQ=47;FQ=54;PV4=0.28,1,4.5e-15,1 GT:PL:GQ 0/1:81,0,255:84 chr1 16863259 . T G 24 . DP=63;VDB=0.0216;AF1=0.5;AC1=1;DP4=35,7,21,0;MQ=49;FQ=27;PV4=0.085,2.1e-17,4.1e-22,1 GT:PL:GQ 0/1:54,0,255:57 chr1 16863304 . T C 3.01 . DP=119;VDB=0.0298;AF1=0.4997;AC1=1;DP4=49,18,26,4;MQ=48;FQ=4.77;PV4=0.19,2.7e-30,3.2e-18,0.084 GT:PL:GQ 0/1:30,0,255:28 chr1 16863308 . G T 17.1 . DP=117;VDB=0.0322;AF1=0.5;AC1=1;DP4=47,16,23,6;MQ=48;FQ=20.1;PV4=0.79,2e-29,1.5e-16,0.042 GT:PL:GQ 0/1:47,0,255:50 chr1 16863314 . A G 23 . DP=125;VDB=0.0298;AF1=0.5;AC1=1;DP4=47,20,24,8;MQ=48;FQ=26;PV4=0.81,6.8e-31,8.6e-17,0.085 GT:PL:GQ 0/1:53,0,255:56 chr1 16863328 . T G 156 . DP=145;VDB=0.0244;AF1=0.5;AC1=1;DP4=43,33,41,24;MQ=45;FQ=159;PV4=0.49,3.9e-20,7.4e-27,1 GT:PL:GQ 0/1:186,0,255:99 chr1 16863352 . C T 223 . DP=159;VDB=0.0244;AF1=0.5;AC1=1;DP4=33,42,37,40;MQ=46;FQ=224;PV4=0.63,0.00062,1.1e-20,1 GT:PL:GQ 0/1:253,0,255:99 chr1 16863398 . A C 160 . DP=131;VDB=0.0298;AF1=0.5;AC1=1;DP4=16,44,22,49;MQ=45;FQ=163;PV4=0.7,2.4e-47,1.6e-16,1 GT:PL:GQ 0/1:190,0,255:99 chr1 16946535 . T C 21.8 . DP=2;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:53,6,0:10 chr1 16948474 . C G 130 . DP=24;VDB=0.0322;AF1=1;AC1=2;DP4=1,0,9,5;MQ=53;FQ=-31;PV4=1,0.0011,0.26,0.33 GT:PL:GQ 1/1:160,4,0:7 chr1 16969381 . C T 225 . DP=99;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,17,22,48;MQ=46;FQ=212;PV4=0.81,1,3.2e-12,1 GT:PL:GQ 0/1:255,0,239:99 chr1 16973152 . A G 188 . DP=84;VDB=0.0322;AF1=0.5;AC1=1;DP4=36,23,11,10;MQ=50;FQ=191;PV4=0.61,1,1,1 GT:PL:GQ 0/1:218,0,255:99 chr1 16973184 . G A 90 . DP=77;VDB=0.0380;AF1=0.5;AC1=1;DP4=34,27,6,8;MQ=47;FQ=93;PV4=0.55,0.41,1,1 GT:PL:GQ 0/1:120,0,255:99 chr1 16973919 . A G 105 . DP=59;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,15,12,10;MQ=32;FQ=108;PV4=0.79,8.3e-14,0.46,1 GT:PL:GQ 0/1:135,0,238:99 chr1 16974666 . C T 64 . DP=33;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,17,3,4;MQ=49;FQ=67;PV4=0.69,0.0063,0.23,0.31 GT:PL:GQ 0/1:94,0,255:97 chr1 16974869 . G C 25 . DP=11;VDB=0.0334;AF1=0.5;AC1=1;DP4=5,1,1,3;MQ=50;FQ=28;PV4=0.19,0.013,1,0.16 GT:PL:GQ 0/1:55,0,112:58 chr1 16976539 . A G 6.98 . DP=17;VDB=0.0006;AF1=0.4999;AC1=1;DP4=10,0,7,0;MQ=40;FQ=9.53;PV4=1,7e-10,0.001,1 GT:PL:GQ 0/1:36,0,142:37 chr1 16976585 . C T 42 . DP=53;VDB=0.0298;AF1=0.5;AC1=1;DP4=33,5,10,4;MQ=38;FQ=45;PV4=0.23,1.2e-08,0.22,1 GT:PL:GQ 0/1:72,0,222:75 chr1 16976620 . A G 82 . DP=93;VDB=0.0190;AF1=0.5;AC1=1;DP4=34,18,27,13;MQ=36;FQ=85;PV4=1,6.5e-46,1,0.097 GT:PL:GQ 0/1:112,0,255:99 chr1 16976679 . G A 225 . DP=115;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,25,35,34;MQ=37;FQ=184;PV4=0.33,0.038,1,0.38 GT:PL:GQ 0/1:255,0,211:99 chr1 17017675 . C A 113 . DP=182;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,26,61,75;MQ=60;FQ=116;PV4=0.37,1.9e-38,1,1 GT:PL:GQ 0/1:143,0,163:99 chr1 17022952 . C A 222 . DP=47;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,24,20;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 17023110 . G A 17.1 . DP=28;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,13,1,5;MQ=60;FQ=20.1;PV4=0.63,2.7e-05,1,1 GT:PL:GQ 0/1:47,0,255:50 chr1 17023126 . C G 67 . DP=28;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,12,3,6;MQ=60;FQ=70;PV4=1,7.5e-05,1,0.37 GT:PL:GQ 0/1:97,0,255:99 chr1 17023376 . C T 60 . DP=99;VDB=0.0365;AF1=0.5;AC1=1;DP4=38,35,11,13;MQ=59;FQ=63;PV4=0.64,1.1e-20,0.36,1 GT:PL:GQ 0/1:90,0,255:93 chr1 17023403 . G A 163 . DP=85;VDB=0.0298;AF1=0.5;AC1=1;DP4=27,39,7,12;MQ=59;FQ=166;PV4=0.8,0.45,0.28,0.26 GT:PL:GQ 0/1:193,0,255:99 chr1 17023511 . C A 5.29 . DP=4;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:35,6,0:6 chr1 17026004 . C G 31 . DP=4;VDB=0.0184;AF1=0.5006;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-3.53;PV4=1,1,1,1 GT:PL:GQ 0/1:61,0,26:29 chr1 17029257 . T C 96 . DP=32;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,15,2,11;MQ=59;FQ=99;PV4=0.21,4.5e-07,0.46,0.38 GT:PL:GQ 0/1:126,0,168:99 chr1 17029513 . C G 48 . DP=20;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,10,1,8;MQ=59;FQ=51;PV4=1,1.2e-09,1,0.2 GT:PL:GQ 0/1:78,0,193:81 chr1 17030504 . T A 37 . DP=68;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,20,2,8;MQ=59;FQ=40;PV4=0.041,1,0.011,1 GT:PL:GQ 0/1:67,0,255:70 chr1 17030590 . G A 33 . DP=108;VDB=0.0393;AF1=0.5;AC1=1;DP4=51,38,7,9;MQ=58;FQ=36;PV4=0.41,0.024,1.7e-05,0.32 GT:PL:GQ 0/1:63,0,255:66 chr1 17030716 . G A 6.2 . DP=15;VDB=0.0030;AF1=0.4999;AC1=1;DP4=1,11,2,1;MQ=60;FQ=8.65;PV4=0.081,0.0012,1,0.045 GT:PL:GQ 0/1:35,0,195:36 chr1 17033758 . A G 66 . DP=19;VDB=0.0373;AF1=0.5;AC1=1;DP4=5,4,7,1;MQ=58;FQ=69;PV4=0.29,0.00017,0.085,0.063 GT:PL:GQ 0/1:96,0,198:99 chr1 17033805 . C T 6.2 . DP=33;VDB=0.0271;AF1=0.4999;AC1=1;DP4=18,9,3,3;MQ=57;FQ=8.65;PV4=0.64,0.0016,6.2e-09,1 GT:PL:GQ 0/1:35,0,255:36 chr1 17033854 . C T 170 . DP=36;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,8,4,10;MQ=57;FQ=173;PV4=0.086,0.17,0.0024,0.26 GT:PL:GQ 0/1:200,0,255:99 chr1 17034041 . T C 52 . DP=8;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,2,2,4;MQ=54;FQ=13.2;PV4=1,9.8e-05,1,1 GT:PL:GQ 0/1:82,0,40:43 chr1 17034125 . CAGCT CAGCTAGCT 134 . INDEL;DP=6;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,2,3,1;MQ=57;FQ=58.5;PV4=0.4,1,0.27,0.27 GT:PL:GQ 0/1:172,0,93:96 chr1 17044589 . G A 128 . DP=19;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,4,5,7;MQ=57;FQ=120;PV4=1,0.0036,0.28,0.37 GT:PL:GQ 0/1:158,0,147:99 chr1 17046456 . T C 6.2 . DP=30;VDB=0.0398;AF1=0.4999;AC1=1;DP4=18,5,5,1;MQ=59;FQ=8.65;PV4=1,7.7e-09,0.024,0.16 GT:PL:GQ 0/1:35,0,255:36 chr1 17046549 . G A 130 . DP=48;VDB=0.0298;AF1=0.5;AC1=1;DP4=16,18,8,4;MQ=60;FQ=133;PV4=0.32,0.23,0.046,1 GT:PL:GQ 0/1:160,0,255:99 chr1 17046595 . T C 50 . DP=50;VDB=0.0271;AF1=0.5;AC1=1;DP4=17,21,3,9;MQ=58;FQ=53;PV4=0.32,1.1e-07,1,1 GT:PL:GQ 0/1:80,0,255:83 chr1 17046613 . C T 162 . DP=52;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,20,4,10;MQ=59;FQ=165;PV4=0.52,1,0.38,1 GT:PL:GQ 0/1:192,0,255:99 chr1 17046698 . C G 3.54 . DP=5;VDB=0.0030;AF1=0.4998;AC1=1;DP4=1,1,2,0;MQ=60;FQ=5.45;PV4=1,0.091,1,1 GT:PL:GQ 0/1:31,0,53:30 chr1 17083807 . T C 27 . DP=38;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,18,3,5;MQ=33;FQ=30;PV4=1,0.44,0.048,1 GT:PL:GQ 0/1:57,0,255:60 chr1 17083872 . G A 61 . DP=25;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,12,2,9;MQ=30;FQ=64;PV4=0.58,1.3e-05,0.16,0.14 GT:PL:GQ 0/1:91,0,126:94 chr1 17084968 . G C 82 . DP=119;VDB=0.0271;AF1=0.5;AC1=1;DP4=41,21,45,11;MQ=35;FQ=85;PV4=0.099,5.1e-49,1,1 GT:PL:GQ 0/1:112,0,255:99 chr1 17085165 . G C 160 . DP=23;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,4,18;MQ=25;FQ=-93 GT:PL:GQ 1/1:193,66,0:99 chr1 17085255 . A G 48 . DP=12;VDB=0.0399;AF1=0.5003;AC1=1;DP4=2,1,6,2;MQ=27;FQ=4.77;PV4=1,9.9e-05,1,1 GT:PL:GQ 0/1:78,0,30:33 chr1 17085427 . T C 33 . DP=113;VDB=0.0271;AF1=0.5;AC1=1;DP4=40,45,12,14;MQ=40;FQ=36;PV4=1,1,5.3e-10,1 GT:PL:GQ 0/1:63,0,255:66 chr1 17085502 . T C 158 . DP=72;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,25,10,27;MQ=41;FQ=161;PV4=1,4.3e-16,0.064,1 GT:PL:GQ 0/1:188,0,253:99 chr1 17085564 . A G 9.52 . DP=46;VDB=0.0384;AF1=0.5;AC1=1;DP4=5,27,3,9;MQ=41;FQ=12.3;PV4=0.66,1.9e-13,1.8e-06,1 GT:PL:GQ 0/1:39,0,255:41 chr1 17085834 . G T 219 . DP=41;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,23,13;MQ=43;FQ=-135 GT:PL:GQ 1/1:252,108,0:99 chr1 17087072 . G A 4.13 . DP=223;VDB=0.0322;AF1=0.4998;AC1=1;DP4=94,88,25,16;MQ=45;FQ=6.2;PV4=0.3,1,0.0086,0.28 GT:PL:GQ 0/1:32,0,245:31 chr1 17087365 . C G 139 . DP=128;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,53,25,22;MQ=51;FQ=142;PV4=0.024,5.7e-28,1,1 GT:PL:GQ 0/1:169,0,255:99 chr1 17087432 . G T 131 . DP=93;VDB=0.0398;AF1=0.5;AC1=1;DP4=21,36,16,19;MQ=50;FQ=134;PV4=0.51,9.3e-27,1.5e-09,0.23 GT:PL:GQ 0/1:161,0,255:99 chr1 17087459 . A G 83 . DP=84;VDB=0.0365;AF1=0.5;AC1=1;DP4=31,36,4,10;MQ=49;FQ=86;PV4=0.25,0.42,1,1 GT:PL:GQ 0/1:113,0,255:99 chr1 17087582 . G A 32 . DP=72;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,40,4,14;MQ=49;FQ=35;PV4=1,1.5e-15,3.6e-08,0.43 GT:PL:GQ 0/1:62,0,255:65 chr1 17090902 . ATT ATTT 22.5 . INDEL;DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,19,6,3;MQ=35;FQ=25.5;PV4=0.48,1,0.29,1 GT:PL:GQ 0/1:60,0,226:63 chr1 17197563 . G T 225 . DP=114;VDB=0.0298;AF1=0.5;AC1=1;DP4=33,28,30,17;MQ=49;FQ=225;PV4=0.33,1,1.8e-32,1 GT:PL:GQ 0/1:255,0,255:99 chr1 17197685 . G A 201 . DP=61;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,29,10,16;MQ=42;FQ=204;PV4=0.081,1,0.0069,0.033 GT:PL:GQ 0/1:231,0,255:99 chr1 17197724 . C G 31 . DP=31;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,16,1,13;MQ=46;FQ=34;PV4=1,9e-10,0.018,1 GT:PL:GQ 0/1:61,0,192:64 chr1 17248500 . A G 62 . DP=37;VDB=0.0343;AF1=0.5;AC1=1;DP4=22,6,6,1;MQ=59;FQ=65;PV4=1,0.38,1,0.29 GT:PL:GQ 0/1:92,0,255:95 chr1 17248532 . A G 164 . DP=50;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,34,11;MQ=59;FQ=-162 GT:PL:GQ 1/1:197,135,0:99 chr1 17249395 . A G 161 . DP=119;VDB=0.0140;AF1=0.5;AC1=1;DP4=11,74,4,29;MQ=59;FQ=164;PV4=1,1,1,1 GT:PL:GQ 0/1:191,0,255:99 chr1 17250836 . A G 95 . DP=23;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,2,9,2;MQ=60;FQ=98;PV4=1,1e-09,1,1 GT:PL:GQ 0/1:125,0,218:99 chr1 17251055 . C T 12.3 . DP=23;VDB=0.0276;AF1=0.5;AC1=1;DP4=4,14,1,3;MQ=58;FQ=15.1;PV4=1,0.0068,0.12,0.26 GT:PL:GQ 0/1:42,0,255:44 chr1 17265327 . A G 225 . DP=73;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,6,31,16;MQ=60;FQ=184;PV4=0.78,1,1,1 GT:PL:GQ 0/1:255,0,211:99 chr1 17265366 . C G 225 . DP=86;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,22,19,26;MQ=59;FQ=225;PV4=0.83,0.014,0.36,0.33 GT:PL:GQ 0/1:255,0,255:99 chr1 17265472 . C G 65 . DP=38;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,20,3,9;MQ=59;FQ=68;PV4=0.66,1.2e-13,1,0.21 GT:PL:GQ 0/1:95,0,255:98 chr1 17265560 . C T 51.1 . DP=9;VDB=0.0305;AF1=0.5163;AC1=1;DP4=0,1,1,5;MQ=54;FQ=-15.1;PV4=1,0.015,1,0.24 GT:PL:GQ 0/1:81,0,12:15 chr1 17267302 . A G 173 . DP=34;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,5,15,9;MQ=60;FQ=152;PV4=0.7,5.2e-10,1,1 GT:PL:GQ 0/1:203,0,179:99 chr1 17267496 . C T 75 . DP=21;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,6,3,5;MQ=60;FQ=78;PV4=0.67,3.1e-06,1,0.21 GT:PL:GQ 0/1:105,0,246:99 chr1 17270845 . C CG 79.5 . INDEL;DP=18;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,10,0,6;MQ=59;FQ=82.5;PV4=0.53,1,1,0.083 GT:PL:GQ 0/1:117,0,215:99 chr1 17273396 . A G 39 . DP=34;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,23,0,6;MQ=60;FQ=42;PV4=1,1,1,0.49 GT:PL:GQ 0/1:69,0,255:72 chr1 17273493 . A C 62 . DP=11;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,1,2,6;MQ=56;FQ=37;PV4=0.49,0.00014,0.19,1 GT:PL:GQ 0/1:92,0,64:67 chr1 17281759 . CGGGGGGG CGGGGGGGG 5.08 . INDEL;DP=33;VDB=0.0373;AF1=0.5;AC1=1;DP4=12,4,4,6;MQ=60;FQ=7.29;PV4=0.11,1,1,0.19 GT:PL:GQ 0/1:41,0,58:41 chr1 17282573 . G A 57 . DP=30;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,2,9,2;MQ=59;FQ=60;PV4=0.62,3.7e-09,1,1 GT:PL:GQ 0/1:87,0,217:90 chr1 17285298 . C T 62 . DP=7;VDB=0.0149;AF1=0.5;AC1=1;DP4=3,1,1,2;MQ=60;FQ=64.5;PV4=0.49,1,1,1 GT:PL:GQ 0/1:92,0,101:94 chr1 17295679 . T C 212 . DP=27;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,7,20;MQ=60;FQ=-108 GT:PL:GQ 1/1:245,81,0:99 chr1 17301672 . T C 204 . DP=51;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,21,6,10;MQ=57;FQ=207;PV4=1,0.21,0.21,1 GT:PL:GQ 0/1:234,0,255:99 chr1 17301780 . A G 175 . DP=33;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,9,4,7;MQ=59;FQ=178;PV4=0.28,1,0.08,0.072 GT:PL:GQ 0/1:205,0,255:99 chr1 17303589 . C T 148 . DP=58;VDB=0.0298;AF1=0.5;AC1=1;DP4=16,8,15,19;MQ=60;FQ=151;PV4=0.11,2.9e-24,1,1 GT:PL:GQ 0/1:178,0,255:99 chr1 17312743 . C T 101 . DP=16;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,4,2,4;MQ=60;FQ=104;PV4=0.61,0.3,1,0.32 GT:PL:GQ 0/1:131,0,202:99 chr1 17313343 . G A 142 . DP=29;VDB=0.0190;AF1=0.5;AC1=1;DP4=12,2,10,5;MQ=60;FQ=145;PV4=0.39,2e-08,1,1 GT:PL:GQ 0/1:172,0,187:99 chr1 17313654 . C T 225 . DP=29;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,4,9,8;MQ=60;FQ=127;PV4=1,0.4,1,0.31 GT:PL:GQ 0/1:255,0,154:99 chr1 17314942 . G A 147 . DP=47;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,24,1,17;MQ=60;FQ=150;PV4=1,0.28,1,1 GT:PL:GQ 0/1:177,0,229:99 chr1 17319011 . G A 106 . DP=61;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,11,16,15;MQ=60;FQ=109;PV4=0.45,4.1e-21,1,1 GT:PL:GQ 0/1:136,0,255:99 chr1 17326767 . C T 36 . DP=24;VDB=0.0271;AF1=0.5;AC1=1;DP4=12,1,9,0;MQ=60;FQ=39;PV4=1,2e-13,1,0.36 GT:PL:GQ 0/1:66,0,201:69 chr1 17331676 . A G 55 . DP=20;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,7,1,8;MQ=60;FQ=58;PV4=0.58,3.1e-06,1,1 GT:PL:GQ 0/1:85,0,198:88 chr1 17359676 . C A 146 . DP=19;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,4,15;MQ=60;FQ=-84 GT:PL:GQ 1/1:179,57,0:99 chr1 17371494 . C T 26 . DP=4;VDB=0.0171;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=27.6;PV4=1,0.21,1,1 GT:PL:GQ 0/1:56,0,60:58 chr1 17380497 . G T 170 . DP=35;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,28;MQ=59;FQ=-126 GT:PL:GQ 1/1:203,99,0:99 chr1 17395480 . G A 84 . DP=20;VDB=0.0053;AF1=0.5;AC1=1;DP4=10,3,7,0;MQ=59;FQ=87;PV4=0.52,0.23,1,1 GT:PL:GQ 0/1:114,0,236:99 chr1 17395521 . G A 177 . DP=47;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,6,22,1;MQ=59;FQ=180;PV4=0.047,1,1,0.036 GT:PL:GQ 0/1:207,0,255:99 chr1 17396703 . T C 170 . DP=66;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,21,10,24;MQ=59;FQ=173;PV4=1,1.3e-15,1,1 GT:PL:GQ 0/1:200,0,255:99 chr1 17398066 . G C 36 . DP=21;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,3,2,8;MQ=60;FQ=39;PV4=0.16,4.6e-11,1,0.22 GT:PL:GQ 0/1:66,0,173:69 chr1 17398069 . T C 46 . DP=21;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,3,2,10;MQ=60;FQ=49;PV4=0.13,2.5e-10,1,0.33 GT:PL:GQ 0/1:76,0,158:79 chr1 17402116 . G T 128 . DP=47;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,8,22,7;MQ=59;FQ=131;PV4=0.092,1.4e-11,1,1 GT:PL:GQ 0/1:158,0,224:99 chr1 17402135 . T C 174 . DP=64;VDB=0.0216;AF1=0.5;AC1=1;DP4=11,12,26,11;MQ=59;FQ=177;PV4=0.11,7.4e-12,1,0.29 GT:PL:GQ 0/1:204,0,255:99 chr1 17402159 . G A 149 . DP=74;VDB=0.0271;AF1=0.5;AC1=1;DP4=16,13,27,15;MQ=59;FQ=152;PV4=0.47,8.7e-20,1,1 GT:PL:GQ 0/1:179,0,255:99 chr1 17402255 . C T 225 . DP=95;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,17,28,28;MQ=60;FQ=225;PV4=1,0.44,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 17402347 . C T 222 . DP=61;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,43;MQ=60;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr1 17402418 . A G 55 . DP=21;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,8,0,12;MQ=60;FQ=58;PV4=0.43,1.5e-13,1,1 GT:PL:GQ 0/1:85,0,170:88 chr1 17402420 . A G 98 . DP=20;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,12,0,8;MQ=60;FQ=101;PV4=1,0.076,1,0.099 GT:PL:GQ 0/1:128,0,173:99 chr1 17405809 . G A 82 . DP=27;VDB=0.0118;AF1=0.5;AC1=1;DP4=11,8,7,0;MQ=60;FQ=85;PV4=0.062,1,1,1 GT:PL:GQ 0/1:112,0,255:99 chr1 17405916 . C T 121 . DP=24;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,15,2,6;MQ=60;FQ=124;PV4=0.25,0.31,1,1 GT:PL:GQ 0/1:151,0,205:99 chr1 17405949 . C T 63 . DP=17;VDB=0.0373;AF1=0.5;AC1=1;DP4=0,10,1,6;MQ=60;FQ=66;PV4=0.41,6e-05,1,1 GT:PL:GQ 0/1:93,0,158:96 chr1 17409017 . G A 146 . DP=21;VDB=0.0164;AF1=0.5;AC1=1;DP4=5,3,13,0;MQ=59;FQ=129;PV4=0.042,1,1,1 GT:PL:GQ 0/1:176,0,156:99 chr1 17409241 . G A 52 . DP=30;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,17,3,8;MQ=60;FQ=55;PV4=0.33,4.2e-12,1,1 GT:PL:GQ 0/1:82,0,224:85 chr1 17410364 . G A 83 . DP=24;VDB=0.0373;AF1=0.5;AC1=1;DP4=2,9,4,9;MQ=59;FQ=86;PV4=0.65,2.3e-13,1,0.046 GT:PL:GQ 0/1:113,0,190:99 chr1 17413121 . A C 65 . DP=46;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,11,8,8;MQ=60;FQ=68;PV4=0.54,3.8e-07,1,1 GT:PL:GQ 0/1:95,0,255:98 chr1 17418883 . A G 74 . DP=8;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:107,24,0:45 chr1 17418894 . A G 13.2 . DP=13;VDB=0.0053;AF1=0.5;AC1=1;DP4=7,1,4,1;MQ=60;FQ=16.1;PV4=1,6.5e-06,1,1 GT:PL:GQ 0/1:43,0,159:46 chr1 17419066 . T C 113 . DP=52;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,22,4,16;MQ=59;FQ=116;PV4=0.52,1.3e-13,1,1 GT:PL:GQ 0/1:143,0,255:99 chr1 17422226 . C T 27 . DP=10;VDB=0.0008;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=30;PV4=1,4.2e-05,1,1 GT:PL:GQ 0/1:57,0,82:60 chr1 17422302 . T C 71 . DP=55;VDB=0.0399;AF1=0.5;AC1=1;DP4=23,2,21,7;MQ=60;FQ=74;PV4=0.15,9.9e-22,1,0.28 GT:PL:GQ 0/1:101,0,233:99 chr1 17550225 . T C 198 . DP=40;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,23;MQ=60;FQ=-132 GT:PL:GQ 1/1:231,105,0:99 chr1 17551034 . A T 36.5 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:69,12,0:21 chr1 17555316 . C G 88 . DP=11;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,9;MQ=60;FQ=-60 GT:PL:GQ 1/1:121,33,0:63 chr1 17555508 . G T 222 . DP=22;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,15,6;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 17604437 . C T 135 . DP=42;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,12,6,14;MQ=59;FQ=138;PV4=0.35,7.8e-09,0.15,0.25 GT:PL:GQ 0/1:165,0,255:99 chr1 17609448 . G T 225 . DP=69;VDB=0.0365;AF1=0.5;AC1=1;DP4=27,18,16,8;MQ=60;FQ=225;PV4=0.61,1,0.086,1 GT:PL:GQ 0/1:255,0,255:99 chr1 17657534 . G A 193 . DP=103;VDB=0.0400;AF1=0.5;AC1=1;DP4=21,25,25,26;MQ=60;FQ=196;PV4=0.84,8.6e-26,1,1 GT:PL:GQ 0/1:223,0,255:99 chr1 17657616 . T C 225 . DP=57;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,18,8,19;MQ=60;FQ=225;PV4=1,0.2,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 17660499 . G C 67 . DP=31;VDB=0.0343;AF1=0.5;AC1=1;DP4=7,12,7,4;MQ=59;FQ=70;PV4=0.26,1.8e-08,0.097,0.16 GT:PL:GQ 0/1:97,0,255:99 chr1 17660660 . G A 3.02 . DP=5;VDB=0.0070;AF1=0.5001;AC1=1;DP4=0,1,1,1;MQ=60;FQ=-3.6;PV4=1,0.077,1,1 GT:PL:GQ 0/1:30,0,28:28 chr1 17661128 . A C 105 . DP=14;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,4,1,5;MQ=60;FQ=108;PV4=0.3,1,1,1 GT:PL:GQ 0/1:135,0,193:99 chr1 17661805 . A G 73 . DP=25;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,10,5,4;MQ=60;FQ=76;PV4=0.43,3.1e-05,1,1 GT:PL:GQ 0/1:103,0,255:99 chr1 17662639 . T C 61 . DP=26;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,4,10,2;MQ=58;FQ=64;PV4=0.65,3.9e-13,0.46,1 GT:PL:GQ 0/1:91,0,246:94 chr1 17662662 . T C 68 . DP=33;VDB=0.0359;AF1=0.5;AC1=1;DP4=10,6,7,6;MQ=58;FQ=71;PV4=0.72,1.1e-10,0.44,0.041 GT:PL:GQ 0/1:98,0,255:99 chr1 17662751 . C G 196 . DP=32;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,11,5,8;MQ=59;FQ=199;PV4=1,0.22,1,0.038 GT:PL:GQ 0/1:226,0,255:99 chr1 17662804 . C T 9.52 . DP=20;VDB=0.0216;AF1=0.5;AC1=1;DP4=5,10,2,2;MQ=60;FQ=12.3;PV4=0.6,7.7e-05,1,1 GT:PL:GQ 0/1:39,0,255:41 chr1 17674402 . C T 225 . DP=41;VDB=0.0164;AF1=0.5;AC1=1;DP4=20,1,14,6;MQ=60;FQ=183;PV4=0.045,0.037,1,0.45 GT:PL:GQ 0/1:255,0,210:99 chr1 17674537 . C A 225 . DP=138;VDB=0.0399;AF1=0.5;AC1=1;DP4=39,44,25,24;MQ=60;FQ=225;PV4=0.72,0.5,0.097,1 GT:PL:GQ 0/1:255,0,255:99 chr1 17683041 . T C 225 . DP=64;VDB=0.0343;AF1=0.5;AC1=1;DP4=11,21,10,19;MQ=58;FQ=225;PV4=1,0.0034,0.46,0.044 GT:PL:GQ 0/1:255,0,255:99 chr1 17685174 . T C 116 . DP=16;VDB=0.0042;AF1=0.5;AC1=1;DP4=6,1,8,0;MQ=60;FQ=119;PV4=0.47,0.43,1,1 GT:PL:GQ 0/1:146,0,156:99 chr1 17685466 . C A 51 . DP=22;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,12,1,7;MQ=59;FQ=54;PV4=1,6.3e-08,0.11,0.14 GT:PL:GQ 0/1:81,0,199:84 chr1 17698725 . C T 183 . DP=32;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,2,12,3;MQ=59;FQ=171;PV4=1,0.46,1,1 GT:PL:GQ 0/1:213,0,198:99 chr1 17698891 . C T 185 . DP=36;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,16,5,9;MQ=60;FQ=188;PV4=0.47,0.094,1,1 GT:PL:GQ 0/1:215,0,255:99 chr1 17698961 . T C 42 . DP=19;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,11,0,7;MQ=60;FQ=45;PV4=1,8.5e-08,1,1 GT:PL:GQ 0/1:72,0,194:75 chr1 17699017 . A G 12 . DP=3;VDB=0.0156;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr1 17699463 . C T 58 . DP=21;VDB=0.0066;AF1=0.5;AC1=1;DP4=10,2,8,1;MQ=59;FQ=61;PV4=1,0.00014,0.13,0.45 GT:PL:GQ 0/1:88,0,196:91 chr1 17699509 . GGTG GGTGAGTG 217 . INDEL;DP=38;VDB=0.0271;AF1=0.5;AC1=1;DP4=18,6,9,4;MQ=59;FQ=217;PV4=0.72,1,0.025,1 GT:PL:GQ 0/1:255,0,255:99 chr1 17707601 . T C 95 . DP=35;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,8,10,7;MQ=55;FQ=98;PV4=0.73,7.8e-16,0.0014,1 GT:PL:GQ 0/1:125,0,255:99 chr1 17707739 . T C 147 . DP=24;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,6,16;MQ=56;FQ=-93 GT:PL:GQ 1/1:180,66,0:99 chr1 17707798 . C T 13 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr1 17708349 . G A 7.8 . DP=13;VDB=0.0004;AF1=0.5;AC1=1;DP4=5,0,7,0;MQ=60;FQ=10.4;PV4=1,3e-09,1,1 GT:PL:GQ 0/1:37,0,104:39 chr1 17714864 . T C 20 . DP=15;VDB=0.0373;AF1=0.5;AC1=1;DP4=6,1,6,0;MQ=60;FQ=23;PV4=1,0.00016,1,0.28 GT:PL:GQ 0/1:50,0,141:53 chr1 17715081 . C T 77 . DP=17;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,6,1,10;MQ=60;FQ=79;PV4=1,3.6e-08,1,0.068 GT:PL:GQ 0/1:107,0,113:99 chr1 17715135 . T C 29 . DP=5;VDB=0.0154;AF1=0.5;AC1=1;DP4=0,2,1,2;MQ=60;FQ=26.6;PV4=1,0.0054,1,1 GT:PL:GQ 0/1:59,0,55:57 chr1 17715475 . T C 24 . DP=8;VDB=0.0143;AF1=0.5;AC1=1;DP4=0,4,1,3;MQ=60;FQ=27;PV4=1,0.0061,1,1 GT:PL:GQ 0/1:54,0,88:57 chr1 17718671 . AGGG AGG 214 . INDEL;DP=32;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,14;MQ=60;FQ=-125 GT:PL:GQ 1/1:255,90,0:99 chr1 17718750 . C T 44 . DP=19;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,9,0,8;MQ=60;FQ=47;PV4=0.49,1.3e-07,1,1 GT:PL:GQ 0/1:74,0,202:77 chr1 17720391 . G A 47 . DP=19;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,1,9,1;MQ=60;FQ=50;PV4=1,2.2e-08,1,1 GT:PL:GQ 0/1:77,0,146:80 chr1 17720439 . T C 196 . DP=26;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,20,6;MQ=60;FQ=-105 GT:PL:GQ 1/1:229,78,0:99 chr1 17720615 . A C 156 . DP=30;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,13,15;MQ=60;FQ=-111 GT:PL:GQ 1/1:189,84,0:99 chr1 17720686 . AGGGGGG AGGGGG 110 . INDEL;DP=34;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,21,11;MQ=59;FQ=-131 GT:PL:GQ 1/1:151,96,0:99 chr1 17723476 . CCA CCACA 114 . INDEL;DP=6;VDB=0.0001;AF1=0.5;AC1=1;DP4=2,1,2,1;MQ=60;FQ=89.5;PV4=1,1,1,0.084 GT:PL:GQ 0/1:152,0,124:99 chr1 17725358 . C G 202 . DP=54;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,13,37;MQ=60;FQ=-178 GT:PL:GQ 1/1:235,151,0:99 chr1 17738570 . ACCC ACC 217 . INDEL;DP=67;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,14,21,14;MQ=60;FQ=217;PV4=0.8,0.00043,1,0.032 GT:PL:GQ 0/1:255,0,255:99 chr1 17739820 . T C 160 . DP=20;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,6,14;MQ=60;FQ=-87 GT:PL:GQ 1/1:193,60,0:99 chr1 17914846 . C T 78.5 . DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:111,12,0:21 chr1 17929980 . C G 181 . DP=32;VDB=0.0216;AF1=0.5;AC1=1;DP4=15,2,10,3;MQ=60;FQ=184;PV4=0.63,0.089,1,0.37 GT:PL:GQ 0/1:211,0,232:99 chr1 17991052 . T C 179 . DP=48;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,26,22;MQ=60;FQ=-171 GT:PL:GQ 1/1:212,144,0:99 chr1 18017522 . T C 222 . DP=87;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,63,22;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 18017558 . A G 222 . DP=119;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,71,45;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 18017704 . C T 219 . DP=63;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,54;MQ=60;FQ=-211 GT:PL:GQ 1/1:252,184,0:99 chr1 18021406 . T C 222 . DP=46;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,29,15;MQ=59;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 18023290 . C T 190 . DP=32;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,23,8;MQ=60;FQ=-120 GT:PL:GQ 1/1:223,93,0:99 chr1 18023365 . C T 222 . DP=47;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,24,21;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 18023509 . T C 222 . DP=38;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,20,18;MQ=59;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 18023690 . A G 222 . DP=45;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,21,22;MQ=59;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 18023877 . G A 52 . DP=15;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,8,2,3;MQ=60;FQ=55;PV4=0.51,0.025,1,1 GT:PL:GQ 0/1:82,0,166:85 chr1 18554345 . T C 53 . DP=51;VDB=0.0099;AF1=0.5;AC1=1;DP4=27,1,17,5;MQ=60;FQ=56;PV4=0.075,4.6e-22,1,1 GT:PL:GQ 0/1:83,0,214:86 chr1 18554356 . C T 116 . DP=60;VDB=0.0164;AF1=0.5;AC1=1;DP4=31,3,20,5;MQ=59;FQ=119;PV4=0.26,7e-15,0.41,1 GT:PL:GQ 0/1:146,0,248:99 chr1 18554567 . C T 95 . DP=52;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,21,3,21;MQ=59;FQ=98;PV4=0.7,1.9e-14,1,1 GT:PL:GQ 0/1:125,0,255:99 chr1 18704862 . A G 225 . DP=43;VDB=0.0099;AF1=0.5;AC1=1;DP4=11,13,7,11;MQ=59;FQ=225;PV4=0.76,1,1,0.26 GT:PL:GQ 0/1:255,0,255:99 chr1 18807897 . C G 115 . DP=65;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,10,18,13;MQ=60;FQ=118;PV4=0.44,9e-19,0.16,0.26 GT:PL:GQ 0/1:145,0,255:99 chr1 18807953 . C A 99 . DP=79;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,15,25,11;MQ=59;FQ=102;PV4=0.63,5.3e-29,1,1 GT:PL:GQ 0/1:129,0,255:99 chr1 18808292 . C A 194 . DP=101;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,26,26,26;MQ=60;FQ=197;PV4=0.69,2.9e-18,1,0.43 GT:PL:GQ 0/1:224,0,255:99 chr1 18808465 . T A 142 . DP=24;VDB=0.0305;AF1=0.5;AC1=1;DP4=3,9,1,10;MQ=60;FQ=145;PV4=0.59,0.43,1,0.018 GT:PL:GQ 0/1:172,0,218:99 chr1 18808526 . A C 86 . DP=24;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,5,5,5;MQ=59;FQ=89;PV4=0.69,0.00015,1,1 GT:PL:GQ 0/1:116,0,222:99 chr1 18810344 . G T 73 . DP=18;VDB=0.0025;AF1=0.5;AC1=1;DP4=8,0,9,1;MQ=60;FQ=76;PV4=1,7.3e-11,1,0.46 GT:PL:GQ 0/1:103,0,138:99 chr1 19027239 . A G 222 . DP=40;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,25,14;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 19029546 . A G 35.3 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:68,15,0:27 chr1 19071183 . aatggatggatggatggatggatggatggatggatggatggatggatggatgg aATGGatggatggatggatggatggatggatggatggatggatggatggatggatgg,aatggatggatggatggatggatggatggatggatggatggatgg 40.2 . INDEL;DP=5;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,3,0;MQ=42;FQ=-40.5 GT:PL:GQ 1/1:99,26,20,78,0,75:10 chr1 19166294 . G A 222 . DP=44;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,18,25;MQ=59;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 19181015 . G C 92 . DP=47;VDB=0.0053;AF1=0.5;AC1=1;DP4=15,14,7,10;MQ=60;FQ=95;PV4=0.55,6.1e-19,1,1 GT:PL:GQ 0/1:122,0,255:99 chr1 19181082 . A C 124 . DP=53;VDB=0.0099;AF1=0.5;AC1=1;DP4=16,13,11,10;MQ=58;FQ=127;PV4=1,2.5e-08,1,1 GT:PL:GQ 0/1:154,0,255:99 chr1 19181393 . T C 225 . DP=133;VDB=0.0322;AF1=0.5;AC1=1;DP4=28,44,35,24;MQ=60;FQ=225;PV4=0.023,0.086,0.059,1 GT:PL:GQ 0/1:255,0,255:99 chr1 19184077 . A G 121 . DP=145;VDB=0.0399;AF1=0.5;AC1=1;DP4=36,47,30,28;MQ=60;FQ=124;PV4=0.39,2.1e-39,1,0.31 GT:PL:GQ 0/1:151,0,255:99 chr1 19184176 . G A 12.3 . DP=43;VDB=0.0042;AF1=0.5;AC1=1;DP4=2,21,1,15;MQ=60;FQ=15.1;PV4=1,1.4e-26,1,0.069 GT:PL:GQ 0/1:42,0,247:44 chr1 19186129 . G C 222 . DP=57;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,33;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr1 19186260 . C T 65 . DP=15;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,4,1,8;MQ=58;FQ=44;PV4=1,0.00035,0.26,1 GT:PL:GQ 0/1:95,0,71:74 chr1 19199473 . T A 115 . DP=40;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,8,12,8;MQ=60;FQ=118;PV4=1,1.3e-09,1,1 GT:PL:GQ 0/1:145,0,255:99 chr1 19200908 . G C 148 . DP=94;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,28,24,19;MQ=60;FQ=151;PV4=0.14,4.6e-24,1,1 GT:PL:GQ 0/1:178,0,255:99 chr1 19201956 . A G 225 . DP=55;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,16,9,15;MQ=60;FQ=225;PV4=0.78,1,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr1 19202770 . T C 222 . DP=51;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,24,25;MQ=59;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 19202917 . T C 216 . DP=21;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,4,3,12;MQ=60;FQ=30;PV4=1,1,1,1 GT:PL:GQ 0/1:246,0,57:60 chr1 19202926 . T C 169 . DP=18;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,4,2,9;MQ=60;FQ=38;PV4=1,1,1,0.23 GT:PL:GQ 0/1:199,0,65:68 chr1 19203997 . C G 155 . DP=29;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,6,7,10;MQ=60;FQ=158;PV4=1,9.8e-06,1,0.3 GT:PL:GQ 0/1:185,0,196:99 chr1 19204154 . G A 37.5 . DP=4;VDB=0.0082;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:70,12,0:21 chr1 19208145 . GG GGGTTGCCTG 173 . INDEL;DP=12;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,10,2;MQ=33;FQ=-70.5 GT:PL:GQ 1/1:214,36,0:69 chr1 19208944 . A G 29.8 . DP=3;VDB=0.0189;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:61,6,0:10 chr1 19209543 . A G 110 . DP=24;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,20,2;MQ=60;FQ=-93 GT:PL:GQ 1/1:143,66,0:99 chr1 19215834 . T C 210 . DP=81;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,47,30;MQ=59;FQ=-259 GT:PL:GQ 1/1:243,232,0:99 chr1 19216428 . G A 49 . DP=17;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,1,7,1;MQ=60;FQ=52;PV4=1,9.7e-10,1,0.21 GT:PL:GQ 0/1:79,0,182:82 chr1 19229050 . G A 217 . DP=54;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,8,19,5;MQ=60;FQ=219;PV4=0.75,1,1,1 GT:PL:GQ 0/1:247,0,255:99 chr1 19243589 . A G 64 . DP=21;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,7,2,10;MQ=60;FQ=67;PV4=1,1.1e-09,1,1 GT:PL:GQ 0/1:94,0,156:97 chr1 19246320 . G A 19.1 . DP=16;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,6,0,10;MQ=60;FQ=22;PV4=1,1.9e-12,1,1 GT:PL:GQ 0/1:49,0,104:52 chr1 19247509 . G A 79 . DP=22;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,4,10,2;MQ=60;FQ=82;PV4=0.35,6.3e-12,1,1 GT:PL:GQ 0/1:109,0,218:99 chr1 19401405 . G A 199 . DP=94;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,49,38;MQ=59;FQ=-263;PV4=0.44,6.7e-05,1,0.25 GT:PL:GQ 1/1:232,236,0:99 chr1 19403173 . C T 80 . DP=17;VDB=0.0042;AF1=0.5;AC1=1;DP4=9,1,6,0;MQ=60;FQ=83;PV4=1,1,1,0.3 GT:PL:GQ 0/1:110,0,169:99 chr1 19408294 . GCCCC GCCCCC 166 . INDEL;DP=138;VDB=0.0345;AF1=0.5;AC1=1;DP4=20,50,26,37;MQ=60;FQ=169;PV4=0.15,1,0.068,0.046 GT:PL:GQ 0/1:204,0,216:99 chr1 19408380 . T C 106 . DP=35;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,13,3,16;MQ=60;FQ=109;PV4=0.62,1.4e-08,0.2,0.16 GT:PL:GQ 0/1:136,0,185:99 chr1 19411129 . A G 222 . DP=44;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,16,26;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 19413261 . T A 222 . DP=31;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,17,12;MQ=60;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 19415304 . C T 124 . DP=23;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,20,2;MQ=60;FQ=-93 GT:PL:GQ 1/1:157,66,0:99 chr1 19420392 . G A 101 . DP=13;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,11,1;MQ=58;FQ=-63 GT:PL:GQ 1/1:134,36,0:69 chr1 19426199 . G A 222 . DP=22;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,6,16;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 19433449 . A G 77.1 . DP=7;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:110,21,0:39 chr1 19447819 . T C 193 . DP=37;VDB=0.0393;AF1=0.5;AC1=1;DP4=4,18,3,11;MQ=60;FQ=196;PV4=1,1,1,1 GT:PL:GQ 0/1:223,0,255:99 chr1 19447843 . C G 222 . DP=32;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,10,20;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 19448326 . C T 222 . DP=49;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,37,10;MQ=59;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 19474975 . T G 222 . DP=59;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,39,19;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 19483209 . A G 86 . DP=12;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:119,36,0:69 chr1 19486839 . T C 76 . DP=9;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:109,27,0:51 chr1 19487656 . T C 222 . DP=34;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,10,24;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 19491857 . T C 222 . DP=94;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,27,65;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 19499835 . G C 222 . DP=100;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,24,74;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 19499873 . G T 225 . DP=61;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,14,12,26;MQ=60;FQ=225;PV4=1,0.3,1,0.49 GT:PL:GQ 0/1:255,0,255:99 chr1 19499954 . G A 168 . DP=52;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,10,18,11;MQ=59;FQ=171;PV4=0.78,2.5e-12,1,1 GT:PL:GQ 0/1:198,0,255:99 chr1 19500729 . G A 191 . DP=54;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,44,7;MQ=60;FQ=-181 GT:PL:GQ 1/1:224,154,0:99 chr1 19510394 . A G 210 . DP=100;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,61,34;MQ=60;FQ=-282 GT:PL:GQ 1/1:243,255,0:99 chr1 19518659 . G A 55.5 . DP=4;VDB=0.0219;AF1=1;AC1=2;DP4=0,0,2,2;MQ=60;FQ=-39 GT:PL:GQ 1/1:88,12,0:21 chr1 19519782 . C T 65.1 . DP=7;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:98,21,0:39 chr1 19519887 . G C 225 . DP=155;VDB=0.0345;AF1=0.5;AC1=1;DP4=64,19,44,25;MQ=60;FQ=225;PV4=0.076,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 19549343 . G C 106 . DP=48;VDB=0.0393;AF1=0.5;AC1=1;DP4=13,16,6,11;MQ=59;FQ=109;PV4=0.55,3.8e-15,1,1 GT:PL:GQ 0/1:136,0,255:99 chr1 19549864 . T C 18.1 . DP=21;VDB=0.0216;AF1=0.5;AC1=1;DP4=12,1,7,1;MQ=60;FQ=21;PV4=1,3e-12,1,1 GT:PL:GQ 0/1:48,0,207:51 chr1 19554099 . T G 42.3 . DP=5;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:75,15,0:27 chr1 19557713 . G C 3.41 . DP=2;VDB=0.0165;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:32,6,0:4 chr1 19558018 . C T 8.64 . DP=12;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,5,0,5;MQ=60;FQ=11.3;PV4=1,1.6e-05,1,1 GT:PL:GQ 0/1:38,0,139:40 chr1 19564650 . C G 167 . DP=62;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,14,13,15;MQ=60;FQ=170;PV4=0.61,5.8e-12,0.14,0.45 GT:PL:GQ 0/1:197,0,255:99 chr1 19565338 . C T 136 . DP=38;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,6,11,7;MQ=60;FQ=139;PV4=0.74,1.2e-10,1,1 GT:PL:GQ 0/1:166,0,255:99 chr1 19565344 . C G 222 . DP=41;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,26,14;MQ=59;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 19566296 . T C 225 . DP=49;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,14,12,7;MQ=60;FQ=225;PV4=0.56,0.04,0.11,0.23 GT:PL:GQ 0/1:255,0,255:99 chr1 19568722 . G C 38.5 . DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:71,12,0:21 chr1 19568972 . A G 104 . DP=21;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,1,20;MQ=60;FQ=-90 GT:PL:GQ 1/1:137,63,0:99 chr1 19570426 . C G 87 . DP=19;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,1,9,3;MQ=60;FQ=85.3;PV4=1,7.5e-07,1,1 GT:PL:GQ 0/1:117,0,114:99 chr1 19578192 . G A 4.77 . DP=5;VDB=0.0186;AF1=0.4999;AC1=1;DP4=3,0,2,0;MQ=60;FQ=6.98;PV4=1,0.031,1,1 GT:PL:GQ 0/1:33,0,81:33 chr1 19581226 . G A 117 . DP=64;VDB=0.0271;AF1=0.5;AC1=1;DP4=19,20,13,10;MQ=59;FQ=120;PV4=0.61,9.2e-24,0.35,1 GT:PL:GQ 0/1:147,0,255:99 chr1 19581442 . GAAAAAAAAAAAA GAAAAAAAAAAAAAA 5.79 . INDEL;DP=22;VDB=0.0099;AF1=0.5001;AC1=1;DP4=0,5,1,5;MQ=58;FQ=-3.63;PV4=1,1,0.19,1 GT:PL:GQ 0/1:42,0,34:38 chr1 19581467 . C T 18.1 . DP=5;VDB=0.0014;AF1=0.5005;AC1=1;DP4=0,1,0,3;MQ=60;FQ=-3.02;PV4=1,0.00094,1,1 GT:PL:GQ 0/1:48,0,27:30 chr1 19582563 . G A 160 . DP=46;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,9,33;MQ=60;FQ=-153 GT:PL:GQ 1/1:193,126,0:99 chr1 19583400 . A G 144 . DP=21;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,15,3;MQ=60;FQ=-81 GT:PL:GQ 1/1:177,54,0:99 chr1 19583684 . C T 40 . DP=13;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,3,2,6;MQ=60;FQ=43;PV4=1,2.9e-05,1,1 GT:PL:GQ 0/1:70,0,90:73 chr1 19583725 . T C 91.1 . DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,2,5;MQ=60;FQ=-48 GT:PL:GQ 1/1:124,21,0:39 chr1 19584004 . G A 75 . DP=47;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,20,6,10;MQ=60;FQ=78;PV4=0.74,6.3e-19,1,0.26 GT:PL:GQ 0/1:105,0,255:99 chr1 19584529 . G A 97 . DP=67;VDB=0.0271;AF1=0.5;AC1=1;DP4=20,20,9,17;MQ=60;FQ=100;PV4=0.31,5.1e-29,1,0.25 GT:PL:GQ 0/1:127,0,255:99 chr1 19584578 . T C 117 . DP=34;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,7,8,14;MQ=60;FQ=120;PV4=1,2e-11,1,0.21 GT:PL:GQ 0/1:147,0,197:99 chr1 19585207 . G A 12.3 . DP=53;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,25,5,9;MQ=59;FQ=15.1;PV4=1,6.3e-24,0.23,1 GT:PL:GQ 0/1:42,0,255:44 chr1 19595137 . C T 177 . DP=32;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,3,16,2;MQ=59;FQ=180;PV4=0.63,0.011,0.19,0.12 GT:PL:GQ 0/1:207,0,226:99 chr1 19595892 . G A 33 . DP=27;VDB=0.0164;AF1=0.5;AC1=1;DP4=3,14,1,7;MQ=58;FQ=36;PV4=1,2.8e-06,1,1 GT:PL:GQ 0/1:63,0,241:66 chr1 19596124 . C T 103 . DP=9;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,1,5,1;MQ=60;FQ=50;PV4=1,0.15,1,1 GT:PL:GQ 0/1:133,0,77:80 chr1 19596156 . G T 59 . DP=19;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,3,7,2;MQ=59;FQ=62;PV4=1,4.5e-08,1,1 GT:PL:GQ 0/1:89,0,189:92 chr1 19600406 . C T 60 . DP=13;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,4,3,3;MQ=55;FQ=63;PV4=1,0.0047,1,0.045 GT:PL:GQ 0/1:90,0,139:93 chr1 19609254 . T C 225 . DP=43;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,8,10,10;MQ=55;FQ=225;PV4=0.75,1,0.42,1 GT:PL:GQ 0/1:255,0,255:99 chr1 19609522 . G A 43 . DP=18;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,9,1,8;MQ=41;FQ=46;PV4=1,1.8e-07,0.16,1 GT:PL:GQ 0/1:73,0,122:76 chr1 19611241 . T C 94 . DP=68;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,28,6,26;MQ=60;FQ=97;PV4=1,4.4e-28,0.15,1 GT:PL:GQ 0/1:124,0,255:99 chr1 19612477 . C T 164 . DP=27;VDB=0.0359;AF1=0.5;AC1=1;DP4=7,10,4,6;MQ=59;FQ=167;PV4=1,1,1,0.44 GT:PL:GQ 0/1:194,0,255:99 chr1 19632757 . C T 69 . DP=12;VDB=0.0042;AF1=0.5;AC1=1;DP4=2,5,0,5;MQ=58;FQ=72;PV4=0.47,0.4,1,0.31 GT:PL:GQ 0/1:99,0,156:99 chr1 19638309 . A G 34.5 . DP=4;VDB=0.0041;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:67,12,0:21 chr1 19644218 . G A 163 . DP=85;VDB=0.0365;AF1=0.5;AC1=1;DP4=28,10,36,8;MQ=60;FQ=166;PV4=0.43,4.1e-21,1,1 GT:PL:GQ 0/1:193,0,255:99 chr1 19651102 . A G 225 . DP=96;VDB=0.0399;AF1=0.5;AC1=1;DP4=35,17,32,10;MQ=60;FQ=225;PV4=0.37,0.39,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 19651277 . G A 30 . DP=32;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,19,2,10;MQ=60;FQ=33;PV4=0.54,4.5e-14,1,0.15 GT:PL:GQ 0/1:60,0,206:63 chr1 19652063 . G A 48 . DP=9;VDB=0.0249;AF1=0.5;AC1=1;DP4=1,4,1,3;MQ=52;FQ=51;PV4=1,0.0034,0.2,0.38 GT:PL:GQ 0/1:78,0,123:81 chr1 19652128 . GTT GT 91.7 . INDEL;DP=6;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,4;MQ=50;FQ=-49.5 GT:PL:GQ 1/1:132,15,0:27 chr1 19652872 . G A 154 . DP=35;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,3,11,10;MQ=60;FQ=157;PV4=0.28,5.1e-09,1,1 GT:PL:GQ 0/1:184,0,212:99 chr1 19653148 . G A 142 . DP=78;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,31,6,33;MQ=60;FQ=145;PV4=0.77,9.8e-24,0.16,0.31 GT:PL:GQ 0/1:172,0,255:99 chr1 19654112 . G A 150 . DP=39;VDB=0.0140;AF1=0.5;AC1=1;DP4=15,1,21,0;MQ=59;FQ=153;PV4=0.43,1,0.11,0.47 GT:PL:GQ 0/1:180,0,192:99 chr1 19654141 . C T 108 . DP=52;VDB=0.0271;AF1=0.5;AC1=1;DP4=17,4,24,6;MQ=59;FQ=111;PV4=1,1.6e-14,1,1 GT:PL:GQ 0/1:138,0,243:99 chr1 19683301 . G T 93 . DP=36;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,12,4,16;MQ=58;FQ=96;PV4=1,1.5e-12,0.069,1 GT:PL:GQ 0/1:123,0,192:99 chr1 19684103 . T C 51 . DP=18;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,8,0,9;MQ=60;FQ=54;PV4=1,4.7e-06,1,1 GT:PL:GQ 0/1:81,0,159:84 chr1 19775246 . C T 128 . DP=52;VDB=0.0190;AF1=0.5;AC1=1;DP4=21,8,14,9;MQ=60;FQ=131;PV4=0.55,5.6e-17,1,1 GT:PL:GQ 0/1:158,0,255:99 chr1 19775492 . A G 28 . DP=7;VDB=0.0110;AF1=0.5;AC1=1;DP4=1,2,1,3;MQ=60;FQ=31;PV4=1,0.00031,1,1 GT:PL:GQ 0/1:58,0,86:61 chr1 19935118 . taaaaaaa tAaaaaaaa 15.6 . INDEL;DP=15;VDB=0.0398;AF1=0.5005;AC1=1;DP4=2,3,3,5;MQ=60;FQ=-8.24;PV4=1,1,1,0.46 GT:PL:GQ 0/1:53,0,27:30 chr1 19981699 . A G 32 . DP=17;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,3,6,1;MQ=59;FQ=35;PV4=0.58,6.1e-08,1,1 GT:PL:GQ 0/1:62,0,198:65 chr1 19981791 . A G 93 . DP=51;VDB=0.0244;AF1=0.5;AC1=1;DP4=19,9,16,5;MQ=59;FQ=96;PV4=0.75,2.3e-22,0.05,1 GT:PL:GQ 0/1:123,0,255:99 chr1 19992513 . C T 225 . DP=78;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,25,11,23;MQ=60;FQ=225;PV4=0.63,0.12,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 20005346 . A C 92 . DP=48;VDB=0.0164;AF1=0.5;AC1=1;DP4=18,4,25,1;MQ=60;FQ=95;PV4=0.16,5.3e-13,1,1 GT:PL:GQ 0/1:122,0,255:99 chr1 20009737 . G A 154 . DP=65;VDB=0.0271;AF1=0.5;AC1=1;DP4=17,20,13,12;MQ=60;FQ=157;PV4=0.8,8.5e-16,1,1 GT:PL:GQ 0/1:184,0,255:99 chr1 20020993 . A G 222 . DP=42;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,6,9;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr1 20027404 . G A 225 . DP=65;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,16,14,24;MQ=60;FQ=225;PV4=0.78,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 20027423 . T G 128 . DP=34;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,13,4,17;MQ=60;FQ=127;PV4=0.14,3.6e-15,1,1 GT:PL:GQ 0/1:158,0,157:99 chr1 20097285 . T G 28 . DP=7;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=31;PV4=1,5.8e-05,1,0.27 GT:PL:GQ 0/1:58,0,78:61 chr1 20097822 . G A 225 . DP=37;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,5,12,8;MQ=59;FQ=199;PV4=0.74,1,0.2,1 GT:PL:GQ 0/1:255,0,226:99 chr1 20097941 . G T 149 . DP=24;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,2,22;MQ=60;FQ=-99 GT:PL:GQ 1/1:182,72,0:99 chr1 20107018 . G A 225 . DP=39;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,8,15,5;MQ=60;FQ=225;PV4=0.32,0.17,1,0.17 GT:PL:GQ 0/1:255,0,255:99 chr1 20141528 . C T 225 . DP=61;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,22,6,18;MQ=60;FQ=225;PV4=0.57,1,1,0.38 GT:PL:GQ 0/1:255,0,255:99 chr1 20216860 . G A 225 . DP=59;VDB=0.0398;AF1=0.5;AC1=1;DP4=27,8,16,7;MQ=60;FQ=225;PV4=0.55,0.11,1,0.32 GT:PL:GQ 0/1:255,0,255:99 chr1 20246876 . C T 195 . DP=27;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,3,12,3;MQ=60;FQ=165;PV4=1,1,1,1 GT:PL:GQ 0/1:225,0,192:99 chr1 20248646 . G A 6.2 . DP=6;VDB=0.0196;AF1=0.4999;AC1=1;DP4=4,0,2,0;MQ=60;FQ=8.65;PV4=1,0.00015,1,1 GT:PL:GQ 0/1:35,0,101:36 chr1 20248651 . A G 4.77 . DP=9;VDB=0.0141;AF1=0.4999;AC1=1;DP4=6,0,3,0;MQ=60;FQ=6.99;PV4=1,4e-05,1,1 GT:PL:GQ 0/1:33,0,128:33 chr1 20248709 . A G 185 . DP=37;VDB=0.0271;AF1=0.5;AC1=1;DP4=20,0,14,2;MQ=60;FQ=156;PV4=0.19,0.043,1,1 GT:PL:GQ 0/1:215,0,183:99 chr1 20304857 . G A 30 . DP=6;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,0,3,1;MQ=60;FQ=21.7;PV4=1,0.0018,1,1 GT:PL:GQ 0/1:60,0,49:52 chr1 20304926 . G A 89 . DP=15;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,2,5,1;MQ=60;FQ=92;PV4=1,1,1,0.31 GT:PL:GQ 0/1:119,0,151:99 chr1 20305065 . C T 123 . DP=13;VDB=0.0140;AF1=0.5;AC1=1;DP4=2,4,2,5;MQ=60;FQ=122;PV4=1,0.13,1,1 GT:PL:GQ 0/1:153,0,152:99 chr1 20395401 . C A 70 . DP=23;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,15,2;MQ=60;FQ=-78 GT:PL:GQ 1/1:103,51,0:99 chr1 20411234 . T A 50 . DP=9;VDB=0.0006;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=51.3;PV4=1,0.39,1,0.45 GT:PL:GQ 0/1:80,0,83:81 chr1 20411332 . C T 125 . DP=29;VDB=0.0384;AF1=0.5;AC1=1;DP4=8,5,9,4;MQ=60;FQ=128;PV4=1,0.00011,1,1 GT:PL:GQ 0/1:155,0,230:99 chr1 20442054 . T C 128 . DP=40;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,18,4,14;MQ=60;FQ=131;PV4=0.68,1.8e-07,1,0.044 GT:PL:GQ 0/1:158,0,243:99 chr1 20446170 . gttttt gtttt 78.5 . INDEL;DP=14;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,12;MQ=60;FQ=-73.5 GT:PL:GQ 1/1:119,39,0:75 chr1 20466830 . T C 78 . DP=60;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,30,5,19;MQ=60;FQ=81;PV4=0.74,9.9e-27,1,1 GT:PL:GQ 0/1:108,0,255:99 chr1 20637043 . C T 37 . DP=23;VDB=0.0025;AF1=0.5;AC1=1;DP4=11,0,9,0;MQ=60;FQ=40;PV4=1,2.6e-11,1,1 GT:PL:GQ 0/1:67,0,170:70 chr1 20637374 . T C 47 . DP=23;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,11,0,11;MQ=60;FQ=50;PV4=1,4.5e-09,1,0.43 GT:PL:GQ 0/1:77,0,159:80 chr1 20664061 . A G 26 . DP=7;VDB=0.0025;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=23.6;PV4=1,0.0022,1,1 GT:PL:GQ 0/1:56,0,52:54 chr1 20671833 . C A 104 . DP=8;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,0,4,1;MQ=60;FQ=49;PV4=1,0.35,1,0.31 GT:PL:GQ 0/1:134,0,76:79 chr1 20671961 . G A 211 . DP=25;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,7,7,5;MQ=60;FQ=200;PV4=0.68,1,1,1 GT:PL:GQ 0/1:241,0,227:99 chr1 20672101 . C T 89 . DP=15;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,6,1,6;MQ=60;FQ=92;PV4=1,0.18,1,1 GT:PL:GQ 0/1:119,0,165:99 chr1 20677533 . C T 68 . DP=6;VDB=0.0022;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=60;FQ=18.1;PV4=1,1,1,1 GT:PL:GQ 0/1:98,0,45:48 chr1 20678551 . A G 155 . DP=114;VDB=0.0398;AF1=0.5;AC1=1;DP4=34,27,21,27;MQ=59;FQ=158;PV4=0.25,1.8e-24,1,0.34 GT:PL:GQ 0/1:185,0,255:99 chr1 20680760 . A G 110 . DP=33;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,8,5,11;MQ=59;FQ=113;PV4=0.47,1.5e-09,1,1 GT:PL:GQ 0/1:140,0,255:99 chr1 20827216 . C T 201 . DP=47;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,39,7;MQ=60;FQ=-165 GT:PL:GQ 1/1:234,138,0:99 chr1 20931601 . TATTCATTCattcattcat TATTCATTCATTCattcattcat 217 . INDEL;DP=65;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,19,3,22;MQ=60;FQ=199;PV4=1,1,1,0.29 GT:PL:GQ 0/1:255,0,234:99 chr1 20940258 . T A 222 . DP=22;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,17,4;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 20940463 . T C 25 . DP=6;VDB=0.0399;AF1=0.5025;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-7.78;PV4=1,0.00015,1,1 GT:PL:GQ 0/1:55,0,20:23 chr1 20944889 . G A 173 . DP=30;VDB=0.0140;AF1=0.5;AC1=1;DP4=11,1,17,1;MQ=60;FQ=151;PV4=1,0.25,1,0.39 GT:PL:GQ 0/1:203,0,178:99 chr1 20944909 . G A 225 . DP=48;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,4,21,5;MQ=60;FQ=197;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,224:99 chr1 20944922 . C T 225 . DP=55;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,6,21,12;MQ=60;FQ=225;PV4=0.77,0.32,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 20945055 . C T 151 . DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,14,16,21;MQ=60;FQ=154;PV4=1,2.2e-28,0.21,0.48 GT:PL:GQ 0/1:181,0,255:99 chr1 20964328 . A G 118 . DP=7;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:151,18,0:33 chr1 20971980 . caaaaaaaaaaaaaaaaa cAAaaaaaaaaaaaaaaaaa,cAaaaaaaaaaaaaaaaaa 5.98 . INDEL;DP=13;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,3,3;MQ=56;FQ=-49.5 GT:PL:GQ 1/1:45,15,0,47,9,44:16 chr1 20972048 . G A 222 . DP=22;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,11,10;MQ=56;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 20977000 . A C 192 . DP=31;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,21,8;MQ=60;FQ=-114 GT:PL:GQ 1/1:225,87,0:99 chr1 20977221 . A T 99 . DP=10;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:132,27,0:51 chr1 20978832 . T C 55 . DP=10;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:88,27,0:51 chr1 20981806 . G A 68.1 . DP=6;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,5,1;MQ=60;FQ=-45 GT:PL:GQ 1/1:101,18,0:33 chr1 20982151 . G A 57 . DP=77;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,20,17,12;MQ=59;FQ=60;PV4=1,4.9e-35,1,0.16 GT:PL:GQ 0/1:87,0,255:90 chr1 20982631 . G A 225 . DP=36;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,8,10,6;MQ=60;FQ=225;PV4=1,0.15,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 20987873 . G C 128 . DP=20;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,1,19;MQ=60;FQ=-87 GT:PL:GQ 1/1:161,60,0:99 chr1 20991016 . C A 49 . DP=13;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,0,5,1;MQ=60;FQ=52;PV4=0.46,0.0082,1,0.022 GT:PL:GQ 0/1:79,0,112:82 chr1 20992819 . G C 104 . DP=27;VDB=0.0384;AF1=0.5;AC1=1;DP4=6,7,3,8;MQ=59;FQ=107;PV4=0.42,1.7e-07,0.14,1 GT:PL:GQ 0/1:134,0,255:99 chr1 20997072 . A G 46 . DP=25;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,12,1,11;MQ=60;FQ=49;PV4=1,2.6e-16,1,1 GT:PL:GQ 0/1:76,0,169:79 chr1 21030902 . G T 38 . DP=24;VDB=0.0099;AF1=0.5;AC1=1;DP4=13,0,11,0;MQ=60;FQ=41;PV4=1,3.3e-10,1,1 GT:PL:GQ 0/1:68,0,163:71 chr1 21040079 . C A 122 . DP=17;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,3,6,6;MQ=60;FQ=26;PV4=0.58,0.077,1,1 GT:PL:GQ 0/1:152,0,53:56 chr1 21042300 . C G 31 . DP=3;VDB=0.0190;AF1=0.5004;AC1=1;DP4=0,1,0,2;MQ=60;FQ=3.55;PV4=1,1,1,1 GT:PL:GQ 0/1:61,0,28:31 chr1 21043913 . T C 131 . DP=34;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,1,15,4;MQ=60;FQ=134;PV4=0.35,7.5e-10,1,0.085 GT:PL:GQ 0/1:161,0,177:99 chr1 21043926 . T C 113 . DP=46;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,2,18,5;MQ=60;FQ=116;PV4=0.42,3e-12,1,1 GT:PL:GQ 0/1:143,0,208:99 chr1 21044052 . T C 189 . DP=68;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,19,17,21;MQ=60;FQ=192;PV4=0.32,5.3e-14,0.2,1 GT:PL:GQ 0/1:219,0,255:99 chr1 21044161 . A G 81 . DP=40;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,19,4,12;MQ=59;FQ=84;PV4=0.43,2.5e-12,0.12,1 GT:PL:GQ 0/1:111,0,233:99 chr1 21044219 . A C 31 . DP=9;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,4,1,4;MQ=57;FQ=34;PV4=1,0.00019,0.2,0.12 GT:PL:GQ 0/1:61,0,93:64 chr1 21050958 . C T 153 . DP=64;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,22,6,23;MQ=60;FQ=156;PV4=0.56,6.3e-19,1,1 GT:PL:GQ 0/1:183,0,255:99 chr1 21053506 . G A 225 . DP=35;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,9,10,7;MQ=59;FQ=225;PV4=0.49,0.021,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 21091861 . G T 49 . DP=40;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,6,17,2;MQ=60;FQ=52;PV4=0.24,1.6e-24,1,1 GT:PL:GQ 0/1:79,0,255:82 chr1 21099846 . A G 24 . DP=7;VDB=0.0082;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=27;PV4=1,2e-06,1,0.36 GT:PL:GQ 0/1:54,0,82:57 chr1 21167404 . A G 222 . DP=43;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,31,12;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 21175855 . C A 95.3 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:128,15,0:27 chr1 21179969 . G A 152 . DP=10;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:185,27,0:51 chr1 21180181 . C T 51 . DP=16;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,8,2,4;MQ=60;FQ=54;PV4=0.53,7.1e-07,1,1 GT:PL:GQ 0/1:81,0,179:84 chr1 21188703 . A T 14.2 . DP=157;VDB=0.0392;AF1=0.5;AC1=1;DP4=43,33,25,14;MQ=60;FQ=17.1;PV4=0.55,7.9e-45,1,0.26 GT:PL:GQ 0/1:44,0,255:47 chr1 21188871 . C A 44 . DP=49;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,26,2,20;MQ=60;FQ=47;PV4=0.58,6.6e-23,1,1 GT:PL:GQ 0/1:74,0,218:77 chr1 21219050 . C T 142 . DP=23;VDB=0.0384;AF1=0.5;AC1=1;DP4=9,2,9,3;MQ=60;FQ=145;PV4=1,0.0027,1,1 GT:PL:GQ 0/1:172,0,197:99 chr1 21226504 . T C 27 . DP=6;VDB=0.0027;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=60;FQ=25.9;PV4=1,1.8e-05,1,0.16 GT:PL:GQ 0/1:57,0,55:56 chr1 21268528 . T C 225 . DP=115;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,26,36,27;MQ=60;FQ=225;PV4=0.34,0.064,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 21295864 . C T 57 . DP=13;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,0,9,0;MQ=58;FQ=32;PV4=1,1.3e-05,1,1 GT:PL:GQ 0/1:87,0,59:62 chr1 21325360 . C A 60 . DP=22;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,3,11,3;MQ=60;FQ=63;PV4=0.62,1.7e-12,1,0.33 GT:PL:GQ 0/1:90,0,183:93 chr1 21327637 . C T 200 . DP=70;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,54,11;MQ=60;FQ=-223 GT:PL:GQ 1/1:233,196,0:99 chr1 21377314 . C T 67 . DP=8;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,6,2;MQ=60;FQ=-51 GT:PL:GQ 1/1:100,24,0:45 chr1 21560316 . C G 3.02 . DP=3;VDB=0.0180;AF1=0.5002;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-3.97;PV4=1,0.037,1,0.45 GT:PL:GQ 0/1:30,0,27:27 chr1 21751142 . A G 15.2 . DP=13;VDB=0.0164;AF1=0.5025;AC1=1;DP4=4,0,9,0;MQ=17;FQ=-7.79;PV4=1,1e-08,1,1 GT:PL:GQ 0/1:45,0,20:23 chr1 21751214 . G A 225 . DP=79;VDB=0.0216;AF1=0.5;AC1=1;DP4=13,9,34,23;MQ=39;FQ=140;PV4=1,1,1,0.38 GT:PL:GQ 0/1:255,0,167:99 chr1 21752682 . G A 20 . DP=24;VDB=0.0042;AF1=0.5;AC1=1;DP4=16,0,8,0;MQ=24;FQ=23;PV4=1,3.8e-09,0.25,1 GT:PL:GQ 0/1:50,0,98:53 chr1 21752766 . A G 12.3 . DP=53;VDB=0.0398;AF1=0.5;AC1=1;DP4=20,21,6,6;MQ=22;FQ=15.1;PV4=1,1.6e-13,0.33,0.13 GT:PL:GQ 0/1:42,0,174:44 chr1 21753562 . A C 59.3 . DP=5;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,2;MQ=30;FQ=-42 GT:PL:GQ 1/1:92,15,0:27 chr1 21754874 . G C 14.2 . DP=9;VDB=0.0133;AF1=0.5;AC1=1;DP4=4,2,2,1;MQ=43;FQ=17.1;PV4=1,0.17,0.47,1 GT:PL:GQ 0/1:44,0,121:47 chr1 21754996 . C T 103 . DP=11;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,1,8;MQ=26;FQ=-54 GT:PL:GQ 1/1:136,27,0:51 chr1 21755055 . C A 49.3 . DP=5;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,5;MQ=25;FQ=-42 GT:PL:GQ 1/1:82,15,0:27 chr1 21755756 . G C 222 . DP=34;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,22,12;MQ=49;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 21755867 . A G 222 . DP=22;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,7,14;MQ=37;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 21755906 . G A 170 . DP=16;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,2,12;MQ=42;FQ=-69 GT:PL:GQ 1/1:203,42,0:81 chr1 21756008 . G T 129 . DP=6;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,3,2;MQ=48;FQ=-42 GT:PL:GQ 1/1:162,15,0:27 chr1 21795388 . A G 125 . DP=29;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,13,1,8;MQ=60;FQ=128;PV4=0.63,1,1,1 GT:PL:GQ 0/1:155,0,255:99 chr1 21799489 . T C 66 . DP=11;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=60;FQ=68.9;PV4=1,0.039,1,0.25 GT:PL:GQ 0/1:96,0,112:99 chr1 21804815 . T G 66 . DP=8;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:99,24,0:45 chr1 21805730 . A G 19.1 . DP=5;VDB=0.0159;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=22;PV4=1,0.27,1,1 GT:PL:GQ 0/1:49,0,81:52 chr1 21805780 . A G 16.1 . DP=17;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,2,3,1;MQ=58;FQ=19.1;PV4=1,0.00013,1,1 GT:PL:GQ 0/1:46,0,218:49 chr1 21887290 . C A 21 . DP=13;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,7,0,6;MQ=60;FQ=24;PV4=1,5.9e-08,1,0.48 GT:PL:GQ 0/1:51,0,140:54 chr1 21889635 . T C 222 . DP=49;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,24,22;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 21889784 . CGGGGG CGGGG 69.5 . INDEL;DP=18;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,3,3,9;MQ=60;FQ=18.5;PV4=0.34,7.1e-14,1,0.26 GT:PL:GQ 0/1:107,0,53:56 chr1 21894735 . T C 198 . DP=41;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,20,3,14;MQ=60;FQ=201;PV4=1,0.29,1,1 GT:PL:GQ 0/1:228,0,255:99 chr1 21894785 . G T 5.46 . DP=12;VDB=0.0081;AF1=0.4999;AC1=1;DP4=0,6,1,5;MQ=60;FQ=7.8;PV4=1,1.4e-09,1,1 GT:PL:GQ 0/1:34,0,129:34 chr1 21894816 . T C 19.1 . DP=8;VDB=0.0017;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=22;PV4=1,0.0019,1,1 GT:PL:GQ 0/1:49,0,84:52 chr1 21896887 . G T 66 . DP=24;VDB=0.0380;AF1=0.5;AC1=1;DP4=0,13,2,9;MQ=60;FQ=69;PV4=0.2,1.1e-08,1,1 GT:PL:GQ 0/1:96,0,166:99 chr1 21896918 . G A 32 . DP=13;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,7,0,6;MQ=60;FQ=35;PV4=1,2e-05,1,1 GT:PL:GQ 0/1:62,0,133:65 chr1 21896925 . C T 73 . DP=12;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,7,0,5;MQ=60;FQ=76;PV4=1,1,1,1 GT:PL:GQ 0/1:103,0,124:99 chr1 21900112 . G A 17.1 . DP=9;VDB=0.0011;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=20.1;PV4=1,0.00036,1,1 GT:PL:GQ 0/1:47,0,90:50 chr1 21900146 . C G 28 . DP=20;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,0,9,0;MQ=60;FQ=31;PV4=1,1.3e-08,1,1 GT:PL:GQ 0/1:58,0,149:61 chr1 21900151 . T C 26 . DP=23;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,0,9,1;MQ=60;FQ=29;PV4=0.45,3.5e-12,1,1 GT:PL:GQ 0/1:56,0,161:59 chr1 21900171 . A G 71 . DP=30;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,2,11,3;MQ=60;FQ=74;PV4=0.65,2.5e-08,1,0.3 GT:PL:GQ 0/1:101,0,199:99 chr1 21900396 . A C 70 . DP=33;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,15,7,8;MQ=60;FQ=73;PV4=0.13,5.3e-15,1,0.45 GT:PL:GQ 0/1:100,0,242:99 chr1 21900397 . G T 60 . DP=33;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,15,7,8;MQ=60;FQ=63;PV4=0.13,3.9e-15,1,0.41 GT:PL:GQ 0/1:90,0,250:93 chr1 21900420 . A G 146 . DP=18;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,3,15;MQ=60;FQ=-81 GT:PL:GQ 1/1:179,54,0:99 chr1 21900444 . A G 51 . DP=15;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,9,0,4;MQ=60;FQ=54;PV4=1,1,1,0.23 GT:PL:GQ 0/1:81,0,175:84 chr1 21900459 . A C 24 . DP=8;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,2,0,5;MQ=60;FQ=20.1;PV4=1,0.0024,1,1 GT:PL:GQ 0/1:54,0,48:50 chr1 21902950 . C A 73 . DP=7;VDB=0.0011;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=47;PV4=1,1,1,0.34 GT:PL:GQ 0/1:103,0,74:77 chr1 21903180 . C T 176 . DP=76;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,22,13,26;MQ=60;FQ=179;PV4=1,6.3e-20,1,1 GT:PL:GQ 0/1:206,0,255:99 chr1 21929260 . A G 177 . DP=65;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,33,29;MQ=60;FQ=-214 GT:PL:GQ 1/1:210,187,0:99 chr1 21929456 . GCCCCCCCC GCCCCCCC 4.5 . INDEL;DP=7;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:43,18,0:17 chr1 21932530 . C A 163 . DP=15;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,9,4;MQ=60;FQ=-66 GT:PL:GQ 1/1:196,39,0:75 chr1 21934667 . G A 222 . DP=48;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,29,17;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 21935433 . G T 193 . DP=26;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,19;MQ=60;FQ=-105 GT:PL:GQ 1/1:226,78,0:99 chr1 21938375 . T G 53.5 . DP=6;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,2,2;MQ=60;FQ=-39 GT:PL:GQ 1/1:86,12,0:21 chr1 21939493 . G C 119 . DP=31;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,29,1;MQ=60;FQ=-117 GT:PL:GQ 1/1:152,90,0:99 chr1 21940555 . C T 222 . DP=18;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,11;MQ=60;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr1 21944352 . A G 85 . DP=35;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,34,0;MQ=59;FQ=-129 GT:PL:GQ 1/1:118,102,0:99 chr1 21946415 . G A 73 . DP=27;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,27,0;MQ=60;FQ=-108 GT:PL:GQ 1/1:106,81,0:99 chr1 21953436 . A G 222 . DP=99;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,79;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 21961339 . A T 222 . DP=75;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,46;MQ=60;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr1 22013561 . C A 16.1 . DP=5;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:48,9,0:15 chr1 22013771 . G A 197 . DP=76;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,23,50;MQ=60;FQ=-244 GT:PL:GQ 1/1:230,217,0:99 chr1 22050649 . C A 81 . DP=51;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,47;MQ=60;FQ=-168 GT:PL:GQ 1/1:114,141,0:99 chr1 22063149 . G A 222 . DP=28;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,4,23;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 22082923 . G A 44.5 . DP=4;VDB=0.0082;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:77,12,0:21 chr1 22109370 . G A 147 . DP=17;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,4,3,5;MQ=58;FQ=124;PV4=1,1,1,0.39 GT:PL:GQ 0/1:177,0,151:99 chr1 22141206 . A C 167 . DP=32;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,8,23;MQ=59;FQ=-120 GT:PL:GQ 1/1:200,93,0:99 chr1 22149935 . T C 222 . DP=59;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,41,16;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr1 22150257 . C T 16.1 . DP=11;VDB=0.0025;AF1=0.5;AC1=1;DP4=1,5,0,5;MQ=60;FQ=19.1;PV4=1,8.4e-05,1,0.22 GT:PL:GQ 0/1:46,0,130:49 chr1 22154845 . A G 225 . DP=99;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,42,13,31;MQ=59;FQ=225;PV4=0.65,0.38,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 22157689 . G A 225 . DP=106;VDB=0.0398;AF1=0.5;AC1=1;DP4=21,34,18,24;MQ=60;FQ=225;PV4=0.68,0.15,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 22158363 . G A 85 . DP=15;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,4,2,8;MQ=58;FQ=73.8;PV4=1,6.9e-06,1,1 GT:PL:GQ 0/1:115,0,101:99 chr1 22160148 . C T 3.54 . DP=11;VDB=0.0171;AF1=0.4998;AC1=1;DP4=0,9,0,2;MQ=60;FQ=5.47;PV4=1,0.15,1,0.46 GT:PL:GQ 0/1:31,0,155:30 chr1 22168216 . C T 42 . DP=10;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,2,0,7;MQ=57;FQ=15.1;PV4=1,0.00023,0.31,0.072 GT:PL:GQ 0/1:72,0,42:45 chr1 22174600 . A G 222 . DP=30;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,12,18;MQ=59;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 22179673 . T C 214 . DP=20;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,19;MQ=60;FQ=-87 GT:PL:GQ 1/1:247,60,0:99 chr1 22180548 . T C 116 . DP=52;VDB=0.0298;AF1=0.5;AC1=1;DP4=17,10,13,12;MQ=60;FQ=119;PV4=0.58,3.8e-14,1,1 GT:PL:GQ 0/1:146,0,255:99 chr1 22183471 . A C 88 . DP=37;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,5,14,2;MQ=59;FQ=91;PV4=0.41,4.2e-10,0.14,0.25 GT:PL:GQ 0/1:118,0,255:99 chr1 22183739 . A G 138 . DP=129;VDB=0.0380;AF1=0.5;AC1=1;DP4=30,32,36,28;MQ=60;FQ=141;PV4=0.48,2.1e-45,1,1 GT:PL:GQ 0/1:168,0,255:99 chr1 22186234 . A G 222 . DP=21;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,4,14;MQ=59;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr1 22191454 . G A 217 . DP=18;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,2,16;MQ=60;FQ=-81 GT:PL:GQ 1/1:250,54,0:99 chr1 22199081 . A T 88.5 . DP=4;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:121,12,0:21 chr1 22199245 . C T 80 . DP=15;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,4,4,3;MQ=60;FQ=83;PV4=1,0.0094,1,1 GT:PL:GQ 0/1:110,0,176:99 chr1 22199821 . G A 129 . DP=31;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,22,8;MQ=60;FQ=-117 GT:PL:GQ 1/1:162,90,0:99 chr1 22200067 . A G 42 . DP=14;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,6,0,7;MQ=58;FQ=45;PV4=1,1e-06,1,0.28 GT:PL:GQ 0/1:72,0,149:75 chr1 22200082 . T C 168 . DP=9;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:201,27,0:51 chr1 22201331 . C T 127 . DP=22;VDB=0.0343;AF1=0.5;AC1=1;DP4=5,5,1,9;MQ=60;FQ=130;PV4=0.14,0.47,1,1 GT:PL:GQ 0/1:157,0,206:99 chr1 22202109 . C T 80 . DP=20;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,16,1;MQ=60;FQ=-78 GT:PL:GQ 1/1:113,51,0:99 chr1 22203259 . A G 27.3 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:60,15,0:27 chr1 22205466 . T C 21.3 . DP=5;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:54,15,0:26 chr1 22206649 . T C 222 . DP=54;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,30,20;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 22206942 . G A 222 . DP=60;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,20,35;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 22207235 . T C 222 . DP=25;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,13;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 22207804 . ACCCAGGGTGGCAGCCCAGG ACCCAGG 214 . INDEL;DP=15;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,8,4;MQ=36;FQ=-70.5 GT:PL:GQ 1/1:255,36,0:69 chr1 22211217 . G A 170 . DP=62;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,5,28,6;MQ=59;FQ=173;PV4=1,8.7e-06,1,1 GT:PL:GQ 0/1:200,0,237:99 chr1 22211222 . T C 222 . DP=62;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,48,14;MQ=59;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr1 22214127 . A G 120 . DP=22;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,5,4,7;MQ=60;FQ=123;PV4=0.67,3.5e-08,1,1 GT:PL:GQ 0/1:150,0,232:99 chr1 22215088 . T C 143 . DP=21;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,12,6;MQ=60;FQ=-81 GT:PL:GQ 1/1:176,54,0:99 chr1 22216279 . C T 154 . DP=20;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,3,9,1;MQ=60;FQ=157;PV4=0.3,1,1,0.37 GT:PL:GQ 0/1:184,0,196:99 chr1 22216574 . C A 58 . DP=35;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,14,6,5;MQ=59;FQ=61;PV4=0.72,1.9e-09,1,1 GT:PL:GQ 0/1:88,0,255:91 chr1 22216604 . C G 123 . DP=29;VDB=0.0359;AF1=0.5;AC1=1;DP4=4,11,5,8;MQ=60;FQ=126;PV4=0.69,5.4e-06,1,0.15 GT:PL:GQ 0/1:153,0,248:99 chr1 22217108 . G A 175 . DP=55;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,26,26;MQ=60;FQ=-184 GT:PL:GQ 1/1:208,157,0:99 chr1 22303702 . C A 59 . DP=21;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,5,2,8;MQ=59;FQ=62;PV4=0.61,3e-10,0.19,1 GT:PL:GQ 0/1:89,0,181:92 chr1 22304831 . C A 104 . DP=24;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,3,7,5;MQ=52;FQ=107;PV4=0.67,2.3e-07,0.00013,1 GT:PL:GQ 0/1:134,0,218:99 chr1 22307340 . C T 9.52 . DP=5;VDB=0.0176;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=50;FQ=12.3;PV4=1,1,0,1 GT:PL:GQ 0/1:39,0,81:41 chr1 22307358 . C G 21 . DP=7;VDB=0.0082;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=49;FQ=24;PV4=1,8.8e-06,0.026,0.17 GT:PL:GQ 0/1:51,0,84:54 chr1 22307538 . C T 173 . DP=29;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,21;MQ=59;FQ=-111 GT:PL:GQ 1/1:206,84,0:99 chr1 22310080 . G A 14.1 . DP=3;VDB=0.0010;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:46,9,0:14 chr1 22310139 . T G 37 . DP=14;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,3,6,0;MQ=51;FQ=40;PV4=0.21,2.2e-05,1,1 GT:PL:GQ 0/1:67,0,152:70 chr1 22310145 . C T 50 . DP=19;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,3,8,0;MQ=47;FQ=53;PV4=0.22,3.2e-06,1,0.5 GT:PL:GQ 0/1:80,0,173:83 chr1 22310262 . G C 156 . DP=53;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,25,23;MQ=39;FQ=-171 GT:PL:GQ 1/1:189,144,0:99 chr1 22310674 . C T 187 . DP=113;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,32,22,44;MQ=60;FQ=190;PV4=0.84,6.7e-17,0.12,1 GT:PL:GQ 0/1:217,0,255:99 chr1 22310807 . A G 20 . DP=8;VDB=0.0174;AF1=0.5;AC1=1;DP4=0,6,0,2;MQ=60;FQ=23;PV4=1,1,1,1 GT:PL:GQ 0/1:50,0,134:53 chr1 22310811 . G A 66 . DP=8;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,2,0,5;MQ=60;FQ=20.1;PV4=1,0.15,1,0.4 GT:PL:GQ 0/1:96,0,47:50 chr1 22310824 . T C 46 . DP=3;VDB=0.0010;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:78,9,0:16 chr1 22312998 . C T 46 . DP=13;VDB=0.0025;AF1=0.5;AC1=1;DP4=4,1,7,0;MQ=58;FQ=49;PV4=0.42,2e-05,0.21,0.11 GT:PL:GQ 0/1:76,0,122:79 chr1 22313103 . C G 125 . DP=42;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,12,12,8;MQ=55;FQ=128;PV4=0.35,4.5e-14,0.21,0.23 GT:PL:GQ 0/1:155,0,255:99 chr1 22313161 . T C 201 . DP=32;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,5,25;MQ=50;FQ=-117 GT:PL:GQ 1/1:234,90,0:99 chr1 22315662 . C T 128 . DP=58;VDB=0.0216;AF1=0.5;AC1=1;DP4=33,6,15,3;MQ=31;FQ=131;PV4=1,0.41,1,1 GT:PL:GQ 0/1:158,0,215:99 chr1 22315710 . G A 137 . DP=55;VDB=0.0398;AF1=0.5;AC1=1;DP4=17,17,7,12;MQ=27;FQ=140;PV4=0.4,1,1,0.47 GT:PL:GQ 0/1:167,0,203:99 chr1 22324705 . T C 222 . DP=73;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,31,38;MQ=57;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr1 22329041 . gccc gcc 78.5 . INDEL;DP=28;VDB=0.0033;AF1=0.5;AC1=1;DP4=16,0,12,0;MQ=40;FQ=81.3;PV4=1,1.2e-11,1,1 GT:PL:GQ 0/1:116,0,131:99 chr1 22329407 . G C 55.5 . DP=4;VDB=0.0041;AF1=1;AC1=2;DP4=0,0,4,0;MQ=29;FQ=-39 GT:PL:GQ 1/1:88,12,0:21 chr1 22329417 . T C 67.3 . DP=5;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,5,0;MQ=29;FQ=-42 GT:PL:GQ 1/1:100,15,0:27 chr1 22329603 . C T 52 . DP=11;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,0,10;MQ=50;FQ=-57 GT:PL:GQ 1/1:85,30,0:57 chr1 22329645 . T C 54.5 . DP=4;VDB=0.0199;AF1=1;AC1=2;DP4=0,0,0,4;MQ=29;FQ=-39 GT:PL:GQ 1/1:87,12,0:21 chr1 22333620 . T C 21 . DP=5;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:53,9,0:15 chr1 22336179 . TCC TC 109 . INDEL;DP=8;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,8,0;MQ=57;FQ=-58.5 GT:PL:GQ 1/1:150,24,0:45 chr1 22336277 . C G 141 . DP=14;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,5,8;MQ=57;FQ=-66 GT:PL:GQ 1/1:174,39,0:75 chr1 22336305 . C T 84 . DP=15;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,3,7;MQ=58;FQ=-57 GT:PL:GQ 1/1:117,30,0:57 chr1 22336308 . G A 67.5 . DP=14;VDB=0.0399;AF1=1;AC1=2;DP4=1,0,3,6;MQ=55;FQ=-34;PV4=0.4,0.041,1,1 GT:PL:GQ 1/1:99,7,0:12 chr1 22336643 . G C 33.1 . DP=5;VDB=0.0204;AF1=0.5129;AC1=1;DP4=0,1,3,0;MQ=30;FQ=-14.2;PV4=0.25,1,1,0.2 GT:PL:GQ 0/1:63,0,13:16 chr1 22336695 . G T 27.8 . DP=3;VDB=0.0175;AF1=1;AC1=2;DP4=0,0,2,0;MQ=33;FQ=-33 GT:PL:GQ 1/1:59,6,0:10 chr1 22408106 . G A 53 . DP=57;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,12,18,7;MQ=60;FQ=56;PV4=0.57,4.4e-28,1,1 GT:PL:GQ 0/1:83,0,255:86 chr1 22447645 . CTG CTGTG 122 . INDEL;DP=10;VDB=0.0002;AF1=0.5;AC1=1;DP4=6,0,4,0;MQ=60;FQ=125;PV4=1,1,1,0.27 GT:PL:GQ 0/1:160,0,171:99 chr1 22832743 . A T 28 . DP=14;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,8,3,3;MQ=60;FQ=31;PV4=0.055,1.8e-06,1,1 GT:PL:GQ 0/1:58,0,141:61 chr1 22835677 . A G 190 . DP=58;VDB=0.0398;AF1=0.5;AC1=1;DP4=1,35,3,17;MQ=60;FQ=186;PV4=0.12,0.18,1,0.27 GT:PL:GQ 0/1:220,0,214:99 chr1 22846709 . G A 222 . DP=59;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,47;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr1 22849003 . A C 6.98 . DP=17;VDB=0.0118;AF1=0.4999;AC1=1;DP4=1,11,1,3;MQ=60;FQ=9.53;PV4=0.45,0.00012,1,0.45 GT:PL:GQ 0/1:36,0,198:37 chr1 22852715 . G C 77 . DP=44;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,11,10,8;MQ=60;FQ=80;PV4=1,7e-17,1,1 GT:PL:GQ 0/1:107,0,255:99 chr1 22925292 . C G 152 . DP=44;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,34,6;MQ=59;FQ=-147 GT:PL:GQ 1/1:185,120,0:99 chr1 22987958 . A G 35.5 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:68,12,0:21 chr1 23045943 . A G 216 . DP=26;VDB=0.0216;AF1=0.5;AC1=1;DP4=7,4,12,3;MQ=60;FQ=182;PV4=0.41,1,1,1 GT:PL:GQ 0/1:246,0,209:99 chr1 23101688 . T G 222 . DP=19;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,11,8;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr1 23216712 . T C 88 . DP=21;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,3,8,2;MQ=60;FQ=91;PV4=1,1.7e-08,1,1 GT:PL:GQ 0/1:118,0,218:99 chr1 23219493 . T C 222 . DP=96;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,46,46;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 23223116 . C T 110 . DP=44;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,23,2,19;MQ=60;FQ=113;PV4=0.22,4.7e-06,1,0.47 GT:PL:GQ 0/1:140,0,164:99 chr1 23236826 . C T 95 . DP=17;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,0,7,0;MQ=60;FQ=98;PV4=1,0.043,1,1 GT:PL:GQ 0/1:125,0,166:99 chr1 23280424 . G T 123 . DP=34;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,7,7,8;MQ=60;FQ=126;PV4=0.72,2.2e-07,1,0.16 GT:PL:GQ 0/1:153,0,255:99 chr1 23289568 . T C 158 . DP=25;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,4,8,2;MQ=60;FQ=161;PV4=0.66,1,1,0.19 GT:PL:GQ 0/1:188,0,233:99 chr1 23342193 . C G 12.3 . DP=8;VDB=0.0170;AF1=0.5;AC1=1;DP4=5,0,3,0;MQ=60;FQ=15.1;PV4=1,5.9e-05,1,0.17 GT:PL:GQ 0/1:42,0,125:44 chr1 23342362 . A G 225 . DP=41;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,16,6,11;MQ=60;FQ=225;PV4=0.49,0.36,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 23380198 . A G 52 . DP=11;VDB=0.0019;AF1=0.5;AC1=1;DP4=3,0,8,0;MQ=60;FQ=41.8;PV4=1,4.3e-07,1,0.33 GT:PL:GQ 0/1:82,0,69:72 chr1 23399932 . C T 127 . DP=38;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,11,4,20;MQ=60;FQ=130;PV4=1,2.1e-17,1,0.29 GT:PL:GQ 0/1:157,0,226:99 chr1 23405794 . A C 19.1 . DP=8;VDB=0.0082;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=22;PV4=1,1.3e-05,1,0.32 GT:PL:GQ 0/1:49,0,100:52 chr1 23409538 . G A 3.01 . DP=13;VDB=0.0014;AF1=0.4997;AC1=1;DP4=9,0,3,0;MQ=60;FQ=4.77;PV4=1,3e-05,1,0.33 GT:PL:GQ 0/1:30,0,160:28 chr1 23418153 . C T 77 . DP=61;VDB=0.0393;AF1=0.5;AC1=1;DP4=12,21,3,24;MQ=60;FQ=80;PV4=0.036,1.9e-26,1,0.16 GT:PL:GQ 0/1:107,0,255:99 chr1 23419261 . G A 225 . DP=82;VDB=0.0399;AF1=0.5;AC1=1;DP4=23,17,13,28;MQ=59;FQ=225;PV4=0.026,0.013,0.29,0.042 GT:PL:GQ 0/1:255,0,255:99 chr1 23419374 . G T 84 . DP=76;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,21,23,17;MQ=60;FQ=87;PV4=0.25,2.1e-36,0.17,1 GT:PL:GQ 0/1:114,0,255:99 chr1 23419383 . C T 170 . DP=78;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,20,22,14;MQ=60;FQ=173;PV4=0.24,5.7e-20,0.16,1 GT:PL:GQ 0/1:200,0,255:99 chr1 23419855 . T C 225 . DP=73;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,16,21,21;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 23688933 . A G 123 . DP=47;VDB=0.0393;AF1=0.5;AC1=1;DP4=14,10,12,9;MQ=60;FQ=126;PV4=1,3.4e-14,1,0.44 GT:PL:GQ 0/1:153,0,255:99 chr1 23689083 . G A 164 . DP=48;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,12,10,18;MQ=60;FQ=167;PV4=0.77,4.9e-15,1,1 GT:PL:GQ 0/1:194,0,255:99 chr1 23693422 . T C 124 . DP=11;VDB=0.0019;AF1=0.5;AC1=1;DP4=3,0,8,0;MQ=60;FQ=46;PV4=1,0.1,1,0.11 GT:PL:GQ 0/1:154,0,73:76 chr1 23696152 . G A 211 . DP=29;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,9,20;MQ=60;FQ=-114 GT:PL:GQ 1/1:244,87,0:99 chr1 23697617 . T C 77 . DP=28;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,7,10,5;MQ=59;FQ=80;PV4=0.45,1.5e-10,0.18,0.45 GT:PL:GQ 0/1:107,0,235:99 chr1 23698120 . C G 107 . DP=15;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,7,0,8;MQ=60;FQ=107;PV4=1,0.075,1,0.06 GT:PL:GQ 0/1:137,0,137:99 chr1 23710805 . A G 222 . DP=50;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,36,13;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 23713952 . T G 181 . DP=25;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,9,14;MQ=59;FQ=-96 GT:PL:GQ 1/1:214,69,0:99 chr1 23724183 . C T 72 . DP=16;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,6,2,7;MQ=57;FQ=75;PV4=1,3.6e-07,0.1,1 GT:PL:GQ 0/1:102,0,154:99 chr1 23724514 . C T 82 . DP=65;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,26,6,26;MQ=60;FQ=85;PV4=1,9.9e-38,1,1 GT:PL:GQ 0/1:112,0,255:99 chr1 23735241 . G T 196 . DP=24;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,7,16;MQ=60;FQ=-96 GT:PL:GQ 1/1:229,69,0:99 chr1 23751140 . G T 219 . DP=60;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,31,9,14;MQ=59;FQ=221;PV4=0.033,0.03,0.38,1 GT:PL:GQ 0/1:249,0,255:99 chr1 23755513 . T C 141 . DP=28;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,5,21;MQ=60;FQ=-105 GT:PL:GQ 1/1:174,78,0:99 chr1 23765472 . A G 75 . DP=9;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,2,7;MQ=57;FQ=-54 GT:PL:GQ 1/1:108,27,0:51 chr1 23810658 . G A 12.3 . DP=8;VDB=0.0324;AF1=0.5;AC1=1;DP4=1,3,0,4;MQ=60;FQ=15.1;PV4=1,0.0073,1,0.32 GT:PL:GQ 0/1:42,0,84:44 chr1 23810686 . C A 5.46 . DP=6;VDB=0.0073;AF1=0.4999;AC1=1;DP4=0,4,1,1;MQ=60;FQ=7.8;PV4=0.33,0.041,1,1 GT:PL:GQ 0/1:34,0,101:34 chr1 23836364 . A G 48 . DP=35;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,4,10,2;MQ=60;FQ=51;PV4=1,9.6e-08,1,0.032 GT:PL:GQ 0/1:78,0,255:81 chr1 23845742 . C T 67 . DP=9;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=60;FQ=69.9;PV4=1,1,1,1 GT:PL:GQ 0/1:97,0,112:99 chr1 23847464 . C A 225 . DP=52;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,12,14,15;MQ=60;FQ=225;PV4=1,0.38,1,0.13 GT:PL:GQ 0/1:255,0,255:99 chr1 23885498 . T C 225 . DP=76;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,18,20,11;MQ=60;FQ=225;PV4=0.81,0.23,1,0.13 GT:PL:GQ 0/1:255,0,255:99 chr1 23885599 . T C 117 . DP=70;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,19,15,18;MQ=60;FQ=120;PV4=1,1.3e-24,1,1 GT:PL:GQ 0/1:147,0,255:99 chr1 23954126 . tacacacacacacacaca tACacacacacacacacaca 59.2 . INDEL;DP=4;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:98,6,0:10 chr1 24018277 . C G 216 . DP=59;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,25,29;MQ=60;FQ=-190 GT:PL:GQ 1/1:249,163,0:99 chr1 24022437 . A G 208 . DP=39;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,17,20;MQ=59;FQ=-112;PV4=1,0.058,0.44,1 GT:PL:GQ 1/1:241,85,0:99 chr1 24083494 . C T 202 . DP=26;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,2,12,3;MQ=60;FQ=159;PV4=1,0.087,1,1 GT:PL:GQ 0/1:232,0,186:99 chr1 24106510 . ATTTT ATTTTT 43.5 . INDEL;DP=27;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,13,0,11;MQ=60;FQ=46.5;PV4=1,1,1,1 GT:PL:GQ 0/1:81,0,114:84 chr1 24129126 . A G 116 . DP=110;VDB=0.0298;AF1=0.5;AC1=1;DP4=23,37,12,34;MQ=60;FQ=119;PV4=0.22,4.8e-37,0.13,1 GT:PL:GQ 0/1:146,0,255:99 chr1 24134721 . T C 225 . DP=53;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,11,16,13;MQ=60;FQ=225;PV4=0.57,1,0.21,1 GT:PL:GQ 0/1:255,0,255:99 chr1 24143932 . A G 137 . DP=30;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,5,8,8;MQ=60;FQ=140;PV4=0.71,3.3e-09,1,1 GT:PL:GQ 0/1:167,0,243:99 chr1 24180962 . T C 162 . DP=98;VDB=0.0384;AF1=0.5;AC1=1;DP4=15,38,17,23;MQ=59;FQ=165;PV4=0.19,1e-28,1,0.16 GT:PL:GQ 0/1:192,0,255:99 chr1 24192200 . A G 56.1 . DP=7;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:89,18,0:33 chr1 24194773 . G A 20 . DP=7;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,4,0,2;MQ=60;FQ=23;PV4=1,1,1,0.22 GT:PL:GQ 0/1:50,0,135:53 chr1 24201162 . G A 161 . DP=71;VDB=0.0365;AF1=0.5;AC1=1;DP4=25,11,22,12;MQ=60;FQ=164;PV4=0.8,5.8e-16,1,0.13 GT:PL:GQ 0/1:191,0,255:99 chr1 24383819 . T C 61 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:93,9,0:16 chr1 24388371 . T C 222 . DP=23;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,15,6;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 24390731 . C T 165 . DP=16;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,4,12;MQ=60;FQ=-75 GT:PL:GQ 1/1:198,48,0:93 chr1 24393656 . G A 139 . DP=41;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,8,27;MQ=59;FQ=-132 GT:PL:GQ 1/1:172,105,0:99 chr1 24393729 . G A 49 . DP=12;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:82,33,0:63 chr1 24400584 . G C 222 . DP=29;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,9;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 24400633 . C G 153 . DP=39;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,20,16;MQ=60;FQ=-135 GT:PL:GQ 1/1:186,108,0:99 chr1 24406647 . G A 222 . DP=48;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,15,28;MQ=59;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 24408015 . C G 124 . DP=27;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,21;MQ=60;FQ=-105 GT:PL:GQ 1/1:157,78,0:99 chr1 24408765 . T C 44.1 . DP=6;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:77,18,0:33 chr1 24409191 . C T 203 . DP=62;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,34,23;MQ=60;FQ=-199 GT:PL:GQ 1/1:236,172,0:99 chr1 24413159 . T C 222 . DP=41;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,24,16;MQ=60;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 24416059 . T C 76 . DP=18;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,0;MQ=60;FQ=-78 GT:PL:GQ 1/1:109,51,0:99 chr1 24416070 . G C 141 . DP=20;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,17,3;MQ=60;FQ=-87 GT:PL:GQ 1/1:174,60,0:99 chr1 24418768 . T C 218 . DP=15;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,13;MQ=58;FQ=-72 GT:PL:GQ 1/1:251,45,0:87 chr1 24419496 . A G 222 . DP=60;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,43,14;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr1 24421334 . G T 172 . DP=29;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,5;MQ=60;FQ=-108 GT:PL:GQ 1/1:205,81,0:99 chr1 24421474 . G A 222 . DP=36;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,9,26;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 24421875 . C T 111 . DP=16;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,13,1;MQ=60;FQ=-69 GT:PL:GQ 1/1:144,42,0:81 chr1 24421950 . C G 222 . DP=52;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,35,17;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 24434717 . TCCCCCC TCCCCCCC 10.4 . INDEL;DP=6;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:50,12,0:17 chr1 24448084 . G A 205 . DP=55;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,20,35;MQ=60;FQ=-193 GT:PL:GQ 1/1:238,166,0:99 chr1 24460797 . T G 168 . DP=55;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,22;MQ=60;FQ=-178 GT:PL:GQ 1/1:201,151,0:99 chr1 24484441 . A G 222 . DP=30;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,7,23;MQ=59;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 24485518 . T C 88 . DP=15;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,15,0;MQ=60;FQ=-72 GT:PL:GQ 1/1:121,45,0:87 chr1 24485813 . T C 27.5 . DP=7;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:60,12,0:21 chr1 24485941 . T C 147 . DP=41;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,29,10;MQ=60;FQ=-144 GT:PL:GQ 1/1:180,117,0:99 chr1 24513768 . G A 13 . DP=2;VDB=0.0165;AF1=1;AC1=2;DP4=0,0,2,0;MQ=47;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr1 24657860 . A G 221 . DP=40;VDB=0.0244;AF1=0.5;AC1=1;DP4=15,0,21,3;MQ=60;FQ=132;PV4=0.27,0.16,1,0.11 GT:PL:GQ 0/1:251,0,159:99 chr1 24658063 . C G 208 . DP=44;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,16,2,22;MQ=60;FQ=211;PV4=0.64,0.21,1,0.01 GT:PL:GQ 0/1:238,0,249:99 chr1 24666020 . C T 10.4 . DP=7;VDB=0.0110;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=13.2;PV4=1,0.00021,1,1 GT:PL:GQ 0/1:40,0,84:42 chr1 24668667 . C G 81 . DP=39;VDB=0.0393;AF1=0.5;AC1=1;DP4=13,9,9,5;MQ=60;FQ=84;PV4=1,5e-07,1,0.25 GT:PL:GQ 0/1:111,0,255:99 chr1 24671287 . C T 184 . DP=81;VDB=0.0322;AF1=0.5;AC1=1;DP4=25,18,17,21;MQ=59;FQ=187;PV4=0.27,7.4e-20,0.47,1 GT:PL:GQ 0/1:214,0,255:99 chr1 24673247 . G A 44.5 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:77,12,0:21 chr1 24673866 . A G 117 . DP=41;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,6,15,4;MQ=60;FQ=120;PV4=0.72,1.2e-10,1,1 GT:PL:GQ 0/1:147,0,255:99 chr1 24684728 . G A 210 . DP=27;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,4,12,3;MQ=59;FQ=185;PV4=0.66,1,1,0.11 GT:PL:GQ 0/1:240,0,212:99 chr1 24695717 . T C 193 . DP=28;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,3,9,4;MQ=60;FQ=196;PV4=0.67,0.18,1,0.39 GT:PL:GQ 0/1:223,0,243:99 chr1 24718079 . C A 156 . DP=52;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,15,10,14;MQ=60;FQ=159;PV4=0.78,1.5e-13,0.14,1 GT:PL:GQ 0/1:186,0,255:99 chr1 24727678 . C T 25 . DP=8;VDB=0.0017;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=28;PV4=1,0.0026,1,1 GT:PL:GQ 0/1:55,0,96:58 chr1 24779873 . C T 29 . DP=32;VDB=0.0099;AF1=0.5;AC1=1;DP4=16,1,14,1;MQ=59;FQ=32;PV4=1,3.1e-16,0.47,0.41 GT:PL:GQ 0/1:59,0,206:62 chr1 24780356 . C A 9.31 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr1 24784197 . T C 125 . DP=38;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,4,18,4;MQ=60;FQ=128;PV4=0.7,2.3e-14,1,0.29 GT:PL:GQ 0/1:155,0,245:99 chr1 24792617 . T A 135 . DP=115;VDB=0.0392;AF1=0.5;AC1=1;DP4=33,35,11,29;MQ=60;FQ=138;PV4=0.043,2.5e-24,0.032,0.36 GT:PL:GQ 0/1:165,0,255:99 chr1 24927561 . T C 176 . DP=20;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,7,2,9;MQ=60;FQ=145;PV4=1,1,1,1 GT:PL:GQ 0/1:206,0,172:99 chr1 24989762 . G T 165 . DP=52;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,11,37;MQ=60;FQ=-171 GT:PL:GQ 1/1:198,144,0:99 chr1 25098245 . T C 67 . DP=18;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,15,0;MQ=60;FQ=-72 GT:PL:GQ 1/1:100,45,0:87 chr1 25098341 . C T 199 . DP=133;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,88,36;MQ=60;FQ=-282 GT:PL:GQ 1/1:232,255,0:99 chr1 25153692 . G A 222 . DP=45;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,28;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 25291010 . A T 222 . DP=43;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,33,8;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 25634205 . G A 213 . DP=14;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,10,2;MQ=58;FQ=-63 GT:PL:GQ 1/1:246,36,0:69 chr1 25648349 . T C 132 . DP=23;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,21,2;MQ=58;FQ=-96 GT:PL:GQ 1/1:165,69,0:99 chr1 25678238 . T A 122 . DP=35;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,31;MQ=60;FQ=-126 GT:PL:GQ 1/1:155,99,0:99 chr1 25717365 . C G 162 . DP=66;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,23,8,25;MQ=56;FQ=165;PV4=1,5.6e-23,0.45,1 GT:PL:GQ 0/1:192,0,255:99 chr1 25747230 . G C 37 . DP=6;VDB=0.0365;AF1=1;AC1=2;DP4=0,1,0,5;MQ=27;FQ=-30;PV4=1,0.016,1,1 GT:PL:GQ 1/1:67,3,0:6 chr1 25889342 . cagag cag 181 . INDEL;DP=10;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,9;MQ=55;FQ=-61.5 GT:PL:GQ 1/1:222,27,0:51 chr1 25889422 . C T 103 . DP=13;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:136,36,0:69 chr1 25889632 . T C 140 . DP=32;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,9,22;MQ=60;FQ=-120 GT:PL:GQ 1/1:173,93,0:99 chr1 25889672 . G A 135 . DP=20;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,1,18;MQ=60;FQ=-84 GT:PL:GQ 1/1:168,57,0:99 chr1 25890050 . A G 86 . DP=28;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,23,3;MQ=59;FQ=-105 GT:PL:GQ 1/1:119,78,0:99 chr1 25890189 . A G 222 . DP=116;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,46,63;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 26085048 . AGGGGGG AGGGGG 42.5 . INDEL;DP=44;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,42,2;MQ=60;FQ=-167 GT:PL:GQ 1/1:83,132,0:99 chr1 26090072 . A G 186 . DP=39;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,20,19;MQ=56;FQ=-144 GT:PL:GQ 1/1:219,117,0:99 chr1 26098107 . G A 129 . DP=12;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,10,2;MQ=60;FQ=-63 GT:PL:GQ 1/1:162,36,0:69 chr1 26098333 . G A 71.1 . DP=7;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:104,18,0:33 chr1 26107688 . C A 222 . DP=44;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,24,15;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 26109237 . A G 65 . DP=32;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,31;MQ=60;FQ=-120 GT:PL:GQ 1/1:98,93,0:99 chr1 26110065 . A G 163 . DP=41;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,34,5;MQ=59;FQ=-144 GT:PL:GQ 1/1:196,117,0:99 chr1 26110143 . G A 222 . DP=77;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,43,30;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr1 26127425 . G A 6.79 . DP=2;VDB=0.0174;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:37,6,0:7 chr1 26131654 . G A 222 . DP=21;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,4;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 26138136 . C A 222 . DP=45;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,17;MQ=58;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 26138262 . T C 128 . DP=32;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,5,24;MQ=60;FQ=-114 GT:PL:GQ 1/1:161,87,0:99 chr1 26139137 . C T 71 . DP=8;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,8,0;MQ=57;FQ=-51 GT:PL:GQ 1/1:104,24,0:45 chr1 26139392 . A G 135 . DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,5,10;MQ=58;FQ=-72 GT:PL:GQ 1/1:168,45,0:87 chr1 26139444 . G A 32.5 . DP=5;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:65,12,0:21 chr1 26140573 . C A 187 . DP=70;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,32,33;MQ=60;FQ=-223 GT:PL:GQ 1/1:220,196,0:99 chr1 26146884 . C G 196 . DP=25;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,18;MQ=59;FQ=-99 GT:PL:GQ 1/1:229,72,0:99 chr1 26147017 . C T 100 . DP=11;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,3,4,2;MQ=60;FQ=76;PV4=0.57,1,1,0.29 GT:PL:GQ 0/1:130,0,103:99 chr1 26150023 . C T 172 . DP=34;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,17,13;MQ=60;FQ=-117 GT:PL:GQ 1/1:205,90,0:99 chr1 26152666 . T C 85 . DP=18;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,16,2;MQ=60;FQ=-81 GT:PL:GQ 1/1:118,54,0:99 chr1 26152758 . A G 222 . DP=79;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,48,28;MQ=59;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr1 26162313 . T G 177 . DP=81;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,20,18,28;MQ=60;FQ=180;PV4=1,6.5e-24,0.2,1 GT:PL:GQ 0/1:207,0,255:99 chr1 26310394 . A G 149 . DP=30;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,20,8;MQ=60;FQ=-111 GT:PL:GQ 1/1:182,84,0:99 chr1 26314564 . T C 85 . DP=8;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:118,24,0:45 chr1 26349245 . C T 132 . DP=46;VDB=0.0384;AF1=0.5;AC1=1;DP4=10,7,18,10;MQ=59;FQ=135;PV4=0.76,2e-13,1,1 GT:PL:GQ 0/1:162,0,236:99 chr1 26349967 . C T 222 . DP=19;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,3,16;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr1 26357656 . C A 222 . DP=143;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,68,73;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 26357855 . A G 222 . DP=50;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,23;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 26358752 . TAA TAAA 214 . INDEL;DP=43;VDB=0.0140;AF1=1;AC1=2;DP4=1,0,39,3;MQ=59;FQ=-132;PV4=1,1,0.41,1 GT:PL:GQ 1/1:255,97,0:99 chr1 26365374 . T G 6.79 . DP=2;VDB=0.0167;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:37,6,0:7 chr1 26365549 . C T 222 . DP=20;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,10,8;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr1 26372144 . A G 13.2 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:45,9,0:14 chr1 26383645 . CCAGGGGTCAGG CCAGG 150 . INDEL;DP=12;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,10,1;MQ=33;FQ=-67.5 GT:PL:GQ 1/1:191,33,0:63 chr1 26487940 . A G 225 . DP=57;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,12,9,14;MQ=60;FQ=225;PV4=0.26,1,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr1 26496455 . C T 62 . DP=23;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,0,11,0;MQ=60;FQ=65;PV4=1,2.2e-09,1,1 GT:PL:GQ 0/1:92,0,158:95 chr1 26510336 . C T 79 . DP=21;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,6,0,14;MQ=60;FQ=62;PV4=1,0.00016,1,1 GT:PL:GQ 0/1:109,0,89:92 chr1 26511139 . G A 83 . DP=13;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,6,0,5;MQ=60;FQ=85.9;PV4=1,1,1,0.12 GT:PL:GQ 0/1:113,0,129:99 chr1 26511700 . A G 197 . DP=39;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,24;MQ=60;FQ=-141 GT:PL:GQ 1/1:230,114,0:99 chr1 26515956 . C A 82 . DP=134;VDB=0.0322;AF1=0.5;AC1=1;DP4=36,29,21,30;MQ=60;FQ=85;PV4=0.14,5e-40,1,1 GT:PL:GQ 0/1:112,0,255:99 chr1 26517667 . T C 35 . DP=10;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,0,8,0;MQ=60;FQ=15.1;PV4=1,4.1e-07,1,0.19 GT:PL:GQ 0/1:65,0,42:45 chr1 26524706 . A G 222 . DP=36;VDB=0.0322;AF1=1;AC1=2;DP4=0,1,16,17;MQ=59;FQ=-98;PV4=1,1,0.43,0.27 GT:PL:GQ 1/1:255,71,0:99 chr1 26527863 . C T 86 . DP=25;VDB=0.0099;AF1=0.5;AC1=1;DP4=17,0,4,3;MQ=60;FQ=89;PV4=0.017,0.067,1,1 GT:PL:GQ 0/1:116,0,173:99 chr1 26527951 . G A 90 . DP=58;VDB=0.0244;AF1=0.5;AC1=1;DP4=19,18,14,6;MQ=59;FQ=93;PV4=0.26,1.3e-16,1,1 GT:PL:GQ 0/1:120,0,255:99 chr1 26529121 . G C 23.2 . DP=6;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:56,18,0:32 chr1 26582091 . G A 182 . DP=95;VDB=0.0398;AF1=0.5;AC1=1;DP4=21,18,25,28;MQ=60;FQ=185;PV4=0.67,8.3e-32,1,1 GT:PL:GQ 0/1:212,0,255:99 chr1 26597435 . G A 183 . DP=55;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,31,22;MQ=60;FQ=-187 GT:PL:GQ 1/1:216,160,0:99 chr1 26601385 . G A 108 . DP=46;VDB=0.0216;AF1=0.5;AC1=1;DP4=17,6,20,3;MQ=60;FQ=111;PV4=0.46,3.2e-18,1,1 GT:PL:GQ 0/1:138,0,255:99 chr1 26606566 . ACGGCGGCGGCG ACGGCGGCGGCGGCG 217 . INDEL;DP=22;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,4,3,5;MQ=57;FQ=217;PV4=1,1,0.074,0.45 GT:PL:GQ 0/1:255,0,255:99 chr1 26608649 . G A 19.8 . DP=2;VDB=0.0145;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:51,6,0:10 chr1 26608769 . C T 4.77 . DP=8;VDB=0.0107;AF1=0.4999;AC1=1;DP4=4,1,2,0;MQ=40;FQ=6.99;PV4=1,0.19,0.19,1 GT:PL:GQ 0/1:33,0,114:33 chr1 26608782 . C T 24 . DP=8;VDB=0.0384;AF1=0.5;AC1=1;DP4=3,0,2,1;MQ=47;FQ=20.1;PV4=1,0.39,1,0.21 GT:PL:GQ 0/1:54,0,48:50 chr1 26608814 . A G 43.3 . DP=5;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,5,0;MQ=37;FQ=-42 GT:PL:GQ 1/1:76,15,0:27 chr1 26608828 . G A 14.2 . DP=4;VDB=0.0194;AF1=0.505;AC1=1;DP4=1,0,3,0;MQ=39;FQ=-10.4;PV4=1,0.0023,1,1 GT:PL:GQ 0/1:44,0,17:20 chr1 26608835 . A T 3.01 . DP=6;VDB=0.0099;AF1=0.4997;AC1=1;DP4=4,0,2,0;MQ=36;FQ=4.77;PV4=1,0.015,0.27,0.0006 GT:PL:GQ 0/1:30,0,77:28 chr1 26608896 . C G 22 . DP=18;VDB=0.0081;AF1=0.5;AC1=1;DP4=12,2,4,0;MQ=50;FQ=25;PV4=1,0.37,0.052,0.27 GT:PL:GQ 0/1:52,0,214:55 chr1 26609093 . A T 225 . DP=108;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,29,24,34;MQ=58;FQ=225;PV4=1,1,0.16,0.26 GT:PL:GQ 0/1:255,0,255:99 chr1 26609259 . C T 225 . DP=85;VDB=0.0392;AF1=0.5;AC1=1;DP4=24,26,22,12;MQ=60;FQ=225;PV4=0.18,5.5e-05,0.11,1 GT:PL:GQ 0/1:255,0,255:99 chr1 26609307 . G T 222 . DP=79;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,40;MQ=60;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr1 26610891 . A C 222 . DP=46;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,17,25;MQ=59;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 26612042 . A G 59 . DP=9;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:92,24,0:45 chr1 26620846 . C CA 208 . INDEL;DP=31;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,6,25;MQ=59;FQ=-128 GT:PL:GQ 1/1:249,93,0:99 chr1 26627478 . T C 222 . DP=211;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,116,76;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 26628293 . G A 68 . DP=16;VDB=0.0241;AF1=0.5;AC1=1;DP4=4,4,3,4;MQ=58;FQ=71;PV4=1,4e-07,0.15,0.14 GT:PL:GQ 0/1:98,0,195:99 chr1 26629465 . G C 45.1 . DP=7;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:78,18,0:33 chr1 26646574 . G A 81 . DP=16;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,0,6,0;MQ=60;FQ=84;PV4=1,0.13,1,0.07 GT:PL:GQ 0/1:111,0,154:99 chr1 26646726 . A G 222 . DP=111;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,46,58;MQ=58;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 26646730 . A G 222 . DP=104;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,40,60;MQ=58;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 26648551 . G C 174 . DP=119;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,75,38;MQ=60;FQ=-282 GT:PL:GQ 1/1:207,255,0:99 chr1 26648826 . G A 47 . DP=34;VDB=0.0042;AF1=0.5;AC1=1;DP4=3,15,2,11;MQ=60;FQ=50;PV4=1,6.3e-14,1,1 GT:PL:GQ 0/1:77,0,254:80 chr1 26650661 . A G 222 . DP=72;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,29,8,15;MQ=60;FQ=223;PV4=0.8,0.28,1,1 GT:PL:GQ 0/1:252,0,255:99 chr1 26654937 . G C 172 . DP=28;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,4,23;MQ=60;FQ=-108 GT:PL:GQ 1/1:205,81,0:99 chr1 26655208 . C T 36 . DP=26;VDB=0.0118;AF1=0.5;AC1=1;DP4=12,2,8,2;MQ=59;FQ=39;PV4=1,1.5e-10,1,0.29 GT:PL:GQ 0/1:66,0,225:69 chr1 26655462 . C T 20 . DP=7;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,2,0,4;MQ=57;FQ=23;PV4=0.43,0.00037,0.22,1 GT:PL:GQ 0/1:50,0,85:53 chr1 26662774 . C T 222 . DP=74;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,42,26;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr1 26662904 . C T 140 . DP=106;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,32,20,31;MQ=59;FQ=143;PV4=1,7.3e-20,0.14,1 GT:PL:GQ 0/1:170,0,255:99 chr1 26663362 . C T 174 . DP=30;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,3,14,7;MQ=60;FQ=108;PV4=1,4.2e-05,1,1 GT:PL:GQ 0/1:204,0,135:99 chr1 26664219 . T C 66 . DP=24;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,12,2,8;MQ=59;FQ=69;PV4=1,3.5e-08,1,1 GT:PL:GQ 0/1:96,0,204:99 chr1 26670444 . G T 107 . DP=84;VDB=0.0400;AF1=0.5;AC1=1;DP4=31,23,15,13;MQ=60;FQ=110;PV4=0.82,1.5e-20,1,1 GT:PL:GQ 0/1:137,0,255:99 chr1 26670609 . C T 225 . DP=74;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,24,21,13;MQ=60;FQ=225;PV4=0.03,1,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr1 26670752 . C T 225 . DP=64;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,23,13,14;MQ=59;FQ=225;PV4=0.44,1,1,0.36 GT:PL:GQ 0/1:255,0,255:99 chr1 26671084 . G T 132 . DP=51;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,14,10,17;MQ=60;FQ=135;PV4=1,4.6e-22,1,1 GT:PL:GQ 0/1:162,0,255:99 chr1 26671248 . A G 47 . DP=17;VDB=0.0393;AF1=0.5;AC1=1;DP4=4,5,1,7;MQ=60;FQ=50;PV4=0.29,7.9e-05,1,1 GT:PL:GQ 0/1:77,0,193:80 chr1 26671578 . A G 3.01 . DP=14;VDB=0.0116;AF1=0.4997;AC1=1;DP4=7,4,0,3;MQ=60;FQ=4.77;PV4=0.19,0.0029,1,0.035 GT:PL:GQ 0/1:30,0,232:28 chr1 26673076 . G A 225 . DP=104;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,33,14,43;MQ=60;FQ=225;PV4=1,0.12,1,0.45 GT:PL:GQ 0/1:255,0,255:99 chr1 26673108 . C T 164 . DP=76;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,25,7,35;MQ=60;FQ=167;PV4=0.77,9.9e-13,1,0.016 GT:PL:GQ 0/1:194,0,255:99 chr1 26673220 . A G 9.52 . DP=6;VDB=0.0030;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=56;FQ=12.3;PV4=1,0.0027,1,1 GT:PL:GQ 0/1:39,0,77:41 chr1 26700795 . T C 171 . DP=49;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,17,32;MQ=60;FQ=-175 GT:PL:GQ 1/1:204,148,0:99 chr1 26752992 . T C 96 . DP=23;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,19;MQ=60;FQ=-90 GT:PL:GQ 1/1:129,63,0:99 chr1 26801229 . C A 52 . DP=40;VDB=0.0140;AF1=0.5;AC1=1;DP4=7,22,4,7;MQ=60;FQ=55;PV4=0.46,1.5e-14,1,1 GT:PL:GQ 0/1:82,0,255:85 chr1 26869610 . G A 72 . DP=69;VDB=0.0400;AF1=0.5;AC1=1;DP4=35,7,19,6;MQ=59;FQ=75;PV4=0.53,2.5e-23,0.36,1 GT:PL:GQ 0/1:102,0,255:99 chr1 26879920 . T C 222 . DP=71;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,48,21;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr1 26880947 . C A 6.21 . DP=4;VDB=0.0020;AF1=0.5012;AC1=1;DP4=0,1,3,0;MQ=60;FQ=-5.64;PV4=0.25,0.046,1,0.32 GT:PL:GQ 0/1:35,0,23:27 chr1 26881565 . AGGGG AGGG 21.5 . INDEL;DP=13;VDB=0.0099;AF1=0.5;AC1=1;DP4=5,2,5,0;MQ=60;FQ=24.5;PV4=0.47,1.8e-05,1,0.4 GT:PL:GQ 0/1:59,0,102:62 chr1 26883511 . A C 169 . DP=117;VDB=0.0399;AF1=0.5;AC1=1;DP4=34,26,28,23;MQ=60;FQ=172;PV4=1,2.2e-23,1,1 GT:PL:GQ 0/1:199,0,255:99 chr1 26899671 . C G 41 . DP=28;VDB=0.0271;AF1=0.5;AC1=1;DP4=12,2,12,0;MQ=60;FQ=44;PV4=0.48,3.3e-12,1,1 GT:PL:GQ 0/1:71,0,225:74 chr1 26900735 . C G 222 . DP=49;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,35;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 26901090 . C T 130 . DP=9;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:163,21,0:39 chr1 27210721 . T C 40 . DP=30;VDB=0.0343;AF1=0.5;AC1=1;DP4=10,13,5,2;MQ=58;FQ=43;PV4=0.39,4.5e-06,0.19,0.31 GT:PL:GQ 0/1:70,0,255:73 chr1 27278521 . G A 173 . DP=40;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,9,13,12;MQ=59;FQ=175;PV4=0.5,9.8e-07,0.23,0.17 GT:PL:GQ 0/1:203,0,207:99 chr1 27278553 . G A 225 . DP=40;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,10,11,13;MQ=60;FQ=182;PV4=0.33,0.16,1,0.28 GT:PL:GQ 0/1:255,0,209:99 chr1 27320356 . T C 62.3 . DP=5;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,2;MQ=60;FQ=-42 GT:PL:GQ 1/1:95,15,0:27 chr1 27333209 . T C 225 . DP=175;VDB=0.0392;AF1=0.5;AC1=1;DP4=49,44,36,39;MQ=60;FQ=225;PV4=0.64,1,0.13,0.49 GT:PL:GQ 0/1:255,0,255:99 chr1 27426796 . T C 222 . DP=32;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,20,10;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 27427041 . T C 204 . DP=114;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,51,55;MQ=60;FQ=-282 GT:PL:GQ 1/1:237,255,0:99 chr1 27609980 . T G 222 . DP=27;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,14;MQ=59;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 27679692 . A G 74 . DP=18;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,16,0;MQ=60;FQ=-75 GT:PL:GQ 1/1:107,48,0:93 chr1 27679797 . A G 222 . DP=87;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,50,31;MQ=60;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr1 27680292 . A G 222 . DP=35;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,22,12;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 27682440 . t tG 214 . INDEL;DP=45;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,35,9;MQ=60;FQ=-167 GT:PL:GQ 1/1:255,132,0:99 chr1 27682481 . G A 222 . DP=64;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,44,14;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 27686063 . G C 200 . DP=14;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,13;MQ=60;FQ=-69 GT:PL:GQ 1/1:233,42,0:81 chr1 27687466 . G T 153 . DP=37;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,19;MQ=59;FQ=-111 GT:PL:GQ 1/1:186,84,0:99 chr1 27690359 . T C 72 . DP=9;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:105,27,0:51 chr1 27690644 . A G 222 . DP=54;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,23;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 27696011 . C T 171 . DP=15;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,15;MQ=58;FQ=-72 GT:PL:GQ 1/1:204,45,0:87 chr1 27875824 . C T 222 . DP=48;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,26,19;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 27944000 . T A 39 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:71,9,0:16 chr1 27995077 . G T 45 . DP=15;VDB=0.0399;AF1=0.5;AC1=1;DP4=0,5,2,6;MQ=58;FQ=48;PV4=0.49,2e-07,1,0.16 GT:PL:GQ 0/1:75,0,98:78 chr1 28058990 . G T 54 . DP=32;VDB=0.0033;AF1=0.5;AC1=1;DP4=15,0,15,2;MQ=60;FQ=57;PV4=0.49,2.4e-11,1,1 GT:PL:GQ 0/1:84,0,160:87 chr1 28060574 . A G 175 . DP=106;VDB=0.0380;AF1=0.5;AC1=1;DP4=36,19,29,21;MQ=60;FQ=178;PV4=0.55,1.1e-28,1,0.33 GT:PL:GQ 0/1:205,0,255:99 chr1 28086955 . C A 190 . DP=23;VDB=0.0033;AF1=0.5;AC1=1;DP4=8,2,11,2;MQ=59;FQ=168;PV4=1,0.27,0.2,0.073 GT:PL:GQ 0/1:220,0,195:99 chr1 28116000 . A G 8.64 . DP=6;VDB=0.0004;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=11.3;PV4=1,5.5e-06,1,0.014 GT:PL:GQ 0/1:38,0,55:40 chr1 28173614 . C G 225 . DP=43;VDB=0.0244;AF1=0.5;AC1=1;DP4=8,11,8,14;MQ=59;FQ=225;PV4=0.76,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 28206588 . T C 176 . DP=59;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,30,2,18;MQ=59;FQ=179;PV4=1,1,1,1 GT:PL:GQ 0/1:206,0,255:99 chr1 28209305 . A G 166 . DP=46;VDB=0.0393;AF1=0.5;AC1=1;DP4=13,7,8,17;MQ=59;FQ=169;PV4=0.038,9.2e-10,0.19,0.13 GT:PL:GQ 0/1:196,0,255:99 chr1 28209362 . T C 112 . DP=44;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,14,7,13;MQ=59;FQ=115;PV4=1,4.5e-16,0.14,0.47 GT:PL:GQ 0/1:142,0,255:99 chr1 28209366 . A G 90 . DP=43;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,13,7,14;MQ=59;FQ=93;PV4=0.75,3.3e-19,0.16,0.3 GT:PL:GQ 0/1:120,0,255:99 chr1 28211650 . T C 49 . DP=8;VDB=0.0089;AF1=0.5;AC1=1;DP4=5,0,3,0;MQ=60;FQ=52;PV4=1,1,1,1 GT:PL:GQ 0/1:79,0,121:82 chr1 28212272 . G A 51 . DP=33;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,0,18,0;MQ=59;FQ=54;PV4=1,3.4e-14,1,1 GT:PL:GQ 0/1:81,0,153:84 chr1 28224312 . C T 72 . DP=9;VDB=0.0095;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=57;FQ=74;PV4=1,1,1,1 GT:PL:GQ 0/1:102,0,108:99 chr1 28268706 . G A 81 . DP=47;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,9,15,5;MQ=58;FQ=84;PV4=0.53,2.1e-15,0.023,1 GT:PL:GQ 0/1:111,0,255:99 chr1 28268829 . TCCCCC TCCCCCC 160 . INDEL;DP=54;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,17;MQ=60;FQ=-140 GT:PL:GQ 1/1:201,105,0:99 chr1 28282206 . C T 43 . DP=17;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,3,5,1;MQ=60;FQ=46;PV4=1,1e-08,1,0.19 GT:PL:GQ 0/1:73,0,224:76 chr1 28282819 . T C 47.1 . DP=8;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:80,21,0:39 chr1 28290231 . C G 4.77 . DP=10;VDB=0.0329;AF1=0.4999;AC1=1;DP4=2,4,0,4;MQ=60;FQ=6.99;PV4=0.47,7.3e-05,1,1 GT:PL:GQ 0/1:33,0,147:33 chr1 28293712 . G A 68 . DP=13;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,4,2,6;MQ=60;FQ=70.7;PV4=1,3.1e-05,1,1 GT:PL:GQ 0/1:98,0,109:99 chr1 28301217 . C T 55 . DP=6;VDB=0.0040;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=49.4;PV4=1,1,1,1 GT:PL:GQ 0/1:85,0,77:79 chr1 28303971 . A G 122 . DP=46;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,15,7,16;MQ=59;FQ=125;PV4=1,9.8e-14,1,0.21 GT:PL:GQ 0/1:152,0,255:99 chr1 28304785 . T C 17.1 . DP=6;VDB=0.0005;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=19.4;PV4=1,0.00062,1,0.012 GT:PL:GQ 0/1:47,0,55:49 chr1 28319867 . C A 95 . DP=41;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,4,13,10;MQ=59;FQ=98;PV4=0.32,4.8e-19,0.2,0.23 GT:PL:GQ 0/1:125,0,251:99 chr1 28369213 . TAAAAA TAAAA 94.5 . INDEL;DP=105;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,36,7,43;MQ=60;FQ=94.9;PV4=0.58,1.2e-06,1,0.26 GT:PL:GQ 0/1:132,0,133:99 chr1 28369279 . G A 187 . DP=37;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,33;MQ=60;FQ=-126 GT:PL:GQ 1/1:220,99,0:99 chr1 28369294 . T C 56 . DP=17;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,6,0,10;MQ=60;FQ=58.9;PV4=1,2.1e-07,1,1 GT:PL:GQ 0/1:86,0,103:89 chr1 28374815 . C T 17.1 . DP=6;VDB=0.0244;AF1=0.5006;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-3.55;PV4=1,0.00078,1,0.25 GT:PL:GQ 0/1:47,0,26:29 chr1 28422847 . C T 146 . DP=78;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,65,12;MQ=46;FQ=-259 GT:PL:GQ 1/1:179,232,0:99 chr1 29016716 . T G 5.29 . DP=59;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:35,6,0:6 chr1 29019724 . G A 49.1 . DP=9;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:82,21,0:39 chr1 29063559 . A C 202 . DP=17;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,11,6;MQ=60;FQ=-78 GT:PL:GQ 1/1:235,51,0:99 chr1 29138975 . G T 76 . DP=12;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:109,33,0:63 chr1 29139140 . C G 55 . DP=30;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,14,2,10;MQ=59;FQ=58;PV4=1,3.2e-10,1,1 GT:PL:GQ 0/1:85,0,231:88 chr1 29189597 . C T 192 . DP=68;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,13,19,13;MQ=60;FQ=195;PV4=1,2.1e-13,1,0.47 GT:PL:GQ 0/1:222,0,255:99 chr1 29365746 . T C 4.13 . DP=11;VDB=0.0041;AF1=0.4998;AC1=1;DP4=7,0,3,0;MQ=60;FQ=6.2;PV4=1,3e-05,1,1 GT:PL:GQ 0/1:32,0,135:31 chr1 29379992 . G A 39 . DP=8;VDB=0.0098;AF1=0.5;AC1=1;DP4=0,5,0,3;MQ=60;FQ=42;PV4=1,0.097,1,0.21 GT:PL:GQ 0/1:69,0,120:72 chr1 29385486 . G C 119 . DP=20;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,8,0,9;MQ=59;FQ=122;PV4=0.22,1,0.14,1 GT:PL:GQ 0/1:149,0,221:99 chr1 29439016 . T A 146 . DP=73;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,20,8,31;MQ=60;FQ=149;PV4=0.075,9.4e-17,0.18,1 GT:PL:GQ 0/1:176,0,255:99 chr1 29447699 . G A 157 . DP=101;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,30,25,24;MQ=60;FQ=160;PV4=0.22,6.4e-27,0.16,1 GT:PL:GQ 0/1:187,0,255:99 chr1 29475341 . C T 9.52 . DP=9;VDB=0.0064;AF1=0.5;AC1=1;DP4=2,3,2,1;MQ=60;FQ=12.3;PV4=1,5.3e-06,1,0.2 GT:PL:GQ 0/1:39,0,148:41 chr1 29475394 . C G 50 . DP=25;VDB=0.0099;AF1=0.5;AC1=1;DP4=7,0,14,1;MQ=60;FQ=53;PV4=1,2.4e-09,1,1 GT:PL:GQ 0/1:80,0,113:83 chr1 29475648 . T G 136 . DP=38;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,4,34;MQ=60;FQ=-141 GT:PL:GQ 1/1:169,114,0:99 chr1 29529699 . T C 222 . DP=84;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,47,33;MQ=60;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr1 29533232 . T C 6.98 . DP=12;VDB=0.0204;AF1=0.4999;AC1=1;DP4=9,0,3,0;MQ=60;FQ=9.53;PV4=1,0.00027,1,1 GT:PL:GQ 0/1:36,0,158:37 chr1 29533473 . C A 32 . DP=26;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,16,1,7;MQ=60;FQ=35;PV4=1,4e-07,1,0.14 GT:PL:GQ 0/1:62,0,222:65 chr1 29542435 . C G 71 . DP=9;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:104,27,0:51 chr1 29542637 . A G 217 . DP=29;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,20;MQ=59;FQ=-114 GT:PL:GQ 1/1:250,87,0:99 chr1 29542655 . G A 62 . DP=24;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,9,4,9;MQ=59;FQ=65;PV4=0.65,9.6e-12,0.18,0.068 GT:PL:GQ 0/1:92,0,203:95 chr1 29542677 . C T 90 . DP=19;VDB=0.0359;AF1=0.5;AC1=1;DP4=2,7,2,8;MQ=60;FQ=93;PV4=1,1.7e-05,1,0.13 GT:PL:GQ 0/1:120,0,176:99 chr1 29557224 . C T 112 . DP=34;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,9,7,7;MQ=59;FQ=115;PV4=1,3e-06,1,0.16 GT:PL:GQ 0/1:142,0,255:99 chr1 29563361 . T C 225 . DP=49;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,17,9,17;MQ=60;FQ=225;PV4=0.55,1,0.18,1 GT:PL:GQ 0/1:255,0,255:99 chr1 29631782 . C T 18.1 . DP=6;VDB=0.0059;AF1=0.5;AC1=1;DP4=2,0,2,2;MQ=60;FQ=17;PV4=0.47,0.0016,1,1 GT:PL:GQ 0/1:48,0,46:47 chr1 29631909 . A G 157 . DP=64;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,12,18,13;MQ=60;FQ=160;PV4=1,4.8e-17,1,0.19 GT:PL:GQ 0/1:187,0,255:99 chr1 31191784 . G A 13.2 . DP=9;VDB=0.0061;AF1=0.5;AC1=1;DP4=3,4,1,1;MQ=57;FQ=16.1;PV4=1,1,1,1 GT:PL:GQ 0/1:43,0,153:46 chr1 31346199 . G A 225 . DP=27;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,6,8,8;MQ=60;FQ=109;PV4=0.39,1,1,1 GT:PL:GQ 0/1:255,0,136:99 chr1 31349647 . C T 109 . DP=13;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,4,2,4;MQ=56;FQ=112;PV4=1,0.18,0.46,0.36 GT:PL:GQ 0/1:139,0,175:99 chr1 31350122 . T G 75 . DP=35;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,16,3,11;MQ=59;FQ=78;PV4=1,9.3e-13,1,0.23 GT:PL:GQ 0/1:105,0,255:99 chr1 31351513 . G A 109 . DP=48;VDB=0.0244;AF1=0.5;AC1=1;DP4=17,12,10,9;MQ=60;FQ=112;PV4=0.77,1.4e-15,1,1 GT:PL:GQ 0/1:139,0,255:99 chr1 31440921 . G A 47.3 . DP=5;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:80,15,0:27 chr1 31445932 . C G 133 . DP=10;VDB=0.0014;AF1=0.5;AC1=1;DP4=4,0,4,2;MQ=57;FQ=66;PV4=0.47,1,0.17,0.15 GT:PL:GQ 0/1:163,0,93:96 chr1 31478637 . AAagagagagaga Aa 48 . INDEL;DP=6;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,4,0;MQ=29;FQ=-46.5 GT:PL:GQ 1/1:88,12,0:21 chr1 31538662 . G A 22 . DP=20;VDB=0.0025;AF1=0.5;AC1=1;DP4=1,9,0,10;MQ=60;FQ=25;PV4=1,1.3e-12,1,1 GT:PL:GQ 0/1:52,0,183:55 chr1 31732892 . G A 159 . DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,10,13,14;MQ=60;FQ=162;PV4=0.58,4.7e-18,1,0.46 GT:PL:GQ 0/1:189,0,255:99 chr1 31733926 . A G 172 . DP=9;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:205,27,0:51 chr1 31740668 . C T 158 . DP=81;VDB=0.0322;AF1=0.5;AC1=1;DP4=33,10,26,11;MQ=59;FQ=161;PV4=0.61,5.8e-23,0.46,0.34 GT:PL:GQ 0/1:188,0,255:99 chr1 31754367 . T C 162 . DP=110;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,39,16,37;MQ=60;FQ=165;PV4=1,9.3e-40,0.49,1 GT:PL:GQ 0/1:192,0,255:99 chr1 31754511 . G C 7.8 . DP=8;VDB=0.0060;AF1=0.5;AC1=1;DP4=0,5,0,3;MQ=60;FQ=10.4;PV4=1,0.0024,1,0.32 GT:PL:GQ 0/1:37,0,113:39 chr1 31761989 . G A 99 . DP=24;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,22,2;MQ=60;FQ=-99 GT:PL:GQ 1/1:132,72,0:99 chr1 31762374 . C T 81.1 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:114,18,0:33 chr1 31764713 . CAAGAA CAAGAAGAA 32.5 . INDEL;DP=5;VDB=0.0011;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=55;FQ=35.5;PV4=1,1,0.14,0.42 GT:PL:GQ 0/1:70,0,137:73 chr1 31764930 . T C 62.1 . DP=7;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:95,21,0:39 chr1 31792141 . A G 100 . DP=7;VDB=0.0006;AF1=0.5064;AC1=1;DP4=0,1,0,6;MQ=60;FQ=-11.3;PV4=1,1,1,1 GT:PL:GQ 0/1:130,0,16:19 chr1 31821932 . taa ta 7.35 . INDEL;DP=6;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,4,0,2;MQ=60;FQ=9.94;PV4=1,0.44,1,0.22 GT:PL:GQ 0/1:44,0,94:45 chr1 31840426 . C G 3.54 . DP=5;VDB=0.0196;AF1=0.4998;AC1=1;DP4=0,3,0,2;MQ=60;FQ=5.47;PV4=1,0.034,1,0.38 GT:PL:GQ 0/1:31,0,77:30 chr1 31842320 . T C 63 . DP=63;VDB=0.0393;AF1=0.5;AC1=1;DP4=12,27,7,14;MQ=60;FQ=66;PV4=1,9.8e-23,1,1 GT:PL:GQ 0/1:93,0,255:96 chr1 31882582 . GGCC GGCCTCAGCC 210 . INDEL;DP=20;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,11,4;MQ=32;FQ=-79.5 GT:PL:GQ 1/1:251,45,0:87 chr1 31883295 . T C 59.3 . DP=6;VDB=0.0343;AF1=1;AC1=2;DP4=0,0,3,2;MQ=60;FQ=-42 GT:PL:GQ 1/1:92,15,0:27 chr1 31886163 . C T 104 . DP=49;VDB=0.0345;AF1=0.5;AC1=1;DP4=20,5,17,6;MQ=60;FQ=107;PV4=0.74,1.2e-19,1,0.27 GT:PL:GQ 0/1:134,0,255:99 chr1 31886750 . gtccctc gTCCCtccctc 71.5 . INDEL;DP=12;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,1,2,1;MQ=58;FQ=74.5;PV4=0.45,1,0.041,1 GT:PL:GQ 0/1:109,0,255:99 chr1 31886833 . T C 214 . DP=18;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,10,8;MQ=59;FQ=-81 GT:PL:GQ 1/1:247,54,0:99 chr1 31897493 . A G 51 . DP=9;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:84,27,0:51 chr1 31897773 . C T 29 . DP=13;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,5,0,8;MQ=60;FQ=32;PV4=1,1.1e-09,1,1 GT:PL:GQ 0/1:59,0,108:62 chr1 31898605 . TCCCC TCC 33.5 . INDEL;DP=7;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,0,2,0;MQ=60;FQ=36.5;PV4=1,2.2e-05,1,0.44 GT:PL:GQ 0/1:71,0,160:74 chr1 31899684 . A T 132 . DP=14;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,13;MQ=58;FQ=-66 GT:PL:GQ 1/1:165,39,0:75 chr1 31899704 . C T 47.1 . DP=8;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:80,21,0:39 chr1 31902279 . G A 147 . DP=132;VDB=0.0392;AF1=0.5;AC1=1;DP4=31,38,35,23;MQ=60;FQ=150;PV4=0.11,1.4e-33,1,0.32 GT:PL:GQ 0/1:177,0,255:99 chr1 31902418 . A G 222 . DP=53;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,10,43;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr1 31905889 . ACAGCAGCAGCAGCAG ACAGCAGCAGCAGCAGCAG 217 . INDEL;DP=57;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,11,19,9;MQ=58;FQ=217;PV4=0.4,1,0.11,0.35 GT:PL:GQ 0/1:255,0,255:99 chr1 31906882 . A G 207 . DP=39;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,23,13;MQ=60;FQ=-135 GT:PL:GQ 1/1:240,108,0:99 chr1 31907102 . A G 49.3 . DP=6;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:82,15,0:27 chr1 31971701 . GCCCC GCCC 78.5 . INDEL;DP=13;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,13,0;MQ=58;FQ=-73.5 GT:PL:GQ 1/1:119,39,0:75 chr1 32044641 . G A 83.1 . DP=7;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,6,1;MQ=49;FQ=-48 GT:PL:GQ 1/1:116,21,0:39 chr1 32084904 . C T 225 . DP=42;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,9,9,9;MQ=60;FQ=225;PV4=0.53,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 32092525 . A G 225 . DP=38;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,11,5,16;MQ=60;FQ=225;PV4=0.49,0.1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 32092735 . T G 74 . DP=15;VDB=0.0053;AF1=0.5;AC1=1;DP4=10,0,5,0;MQ=60;FQ=77;PV4=1,1,1,1 GT:PL:GQ 0/1:104,0,164:99 chr1 32092918 . TT TTCCT 217 . INDEL;DP=106;VDB=0.0365;AF1=0.5;AC1=1;DP4=23,23,22,35;MQ=57;FQ=217;PV4=0.32,1,0.019,1 GT:PL:GQ 0/1:255,0,255:99 chr1 32096265 . A G 18.1 . DP=7;VDB=0.0126;AF1=0.5;AC1=1;DP4=3,0,3,1;MQ=60;FQ=21;PV4=1,0.00069,1,1 GT:PL:GQ 0/1:48,0,74:51 chr1 32100551 . gaaaaa gaaaa 73.5 . INDEL;DP=44;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,18,4,16;MQ=60;FQ=69.5;PV4=0.7,4.8e-13,1,1 GT:PL:GQ 0/1:111,0,105:99 chr1 32119347 . Aacacacacacacacacacacacacacaca Aacacacacacacacacacacacaca 34.5 . INDEL;DP=9;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,1,1,2;MQ=56;FQ=37.5;PV4=1,1,0.19,1 GT:PL:GQ 0/1:72,0,118:75 chr1 32119431 . T C 135 . DP=33;VDB=0.0190;AF1=0.5;AC1=1;DP4=9,7,12,5;MQ=60;FQ=138;PV4=0.48,9.2e-11,1,0.39 GT:PL:GQ 0/1:165,0,255:99 chr1 32127911 . C T 165 . DP=42;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,4,15,18;MQ=60;FQ=83;PV4=1,2.4e-09,1,0.33 GT:PL:GQ 0/1:195,0,110:99 chr1 32127953 . G A 225 . DP=41;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,5,12,22;MQ=60;FQ=29;PV4=0.64,1,1,1 GT:PL:GQ 0/1:255,0,56:59 chr1 32128283 . C G 4.61 . DP=2;VDB=0.0090;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:34,6,0:5 chr1 32131163 . C G 144 . DP=119;VDB=0.0271;AF1=0.5;AC1=1;DP4=19,44,19,34;MQ=60;FQ=147;PV4=0.56,6e-37,1,1 GT:PL:GQ 0/1:174,0,255:99 chr1 32133737 . C T 75 . DP=23;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,0,12,1;MQ=60;FQ=77;PV4=1,6.5e-08,1,1 GT:PL:GQ 0/1:105,0,111:99 chr1 32134491 . C G 51 . DP=18;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,8,2,8;MQ=60;FQ=54;PV4=0.48,5e-09,1,1 GT:PL:GQ 0/1:81,0,130:84 chr1 32136168 . G C,T 95 . DP=45;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,29,13;MQ=59;FQ=-93 GT:PL:GQ 1/1:255,193,127,189,0,129:99 chr1 32136398 . G A 124 . DP=43;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,20,4,16;MQ=59;FQ=127;PV4=0.69,3.5e-14,1,1 GT:PL:GQ 0/1:154,0,255:99 chr1 32140733 . C T 62 . DP=23;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,4,6,5;MQ=60;FQ=65;PV4=1,2.5e-10,1,1 GT:PL:GQ 0/1:92,0,217:95 chr1 32145009 . C T 222 . DP=32;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,28,4;MQ=59;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr1 32146425 . C T 76 . DP=22;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,0,11,3;MQ=60;FQ=78.2;PV4=0.52,2.2e-08,1,1 GT:PL:GQ 0/1:106,0,113:99 chr1 32148571 . A G 201 . DP=71;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,46,24;MQ=60;FQ=-238 GT:PL:GQ 1/1:234,211,0:99 chr1 32156869 . A T 222 . DP=97;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,52,42;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 32156940 . C A 116 . DP=97;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,27,19,20;MQ=59;FQ=119;PV4=1,3.7e-30,0.41,1 GT:PL:GQ 0/1:146,0,255:99 chr1 32157009 . G T 117 . DP=83;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,26,14,24;MQ=59;FQ=120;PV4=1,1.3e-24,0.068,0.48 GT:PL:GQ 0/1:147,0,255:99 chr1 32158304 . A G 225 . DP=84;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,30,16,15;MQ=59;FQ=225;PV4=0.37,0.034,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr1 32158374 . T C 225 . DP=62;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,25,10,17;MQ=60;FQ=225;PV4=0.42,1,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 32160918 . A G 96 . DP=24;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,14,0,8;MQ=60;FQ=99;PV4=0.54,1,1,1 GT:PL:GQ 0/1:126,0,226:99 chr1 32167526 . G C 51.3 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:84,15,0:27 chr1 32204035 . C T 225 . DP=80;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,15,26,17;MQ=60;FQ=225;PV4=0.65,0.43,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 32266026 . A G 222 . DP=55;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,31,21;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 32280610 . T C 222 . DP=57;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,33;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr1 32378540 . G T 194 . DP=38;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,17,21;MQ=60;FQ=-141 GT:PL:GQ 1/1:227,114,0:99 chr1 32379996 . CTATTTA CTA 214 . INDEL;DP=24;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,16,7;MQ=50;FQ=-104 GT:PL:GQ 1/1:255,69,0:99 chr1 32658062 . GGTG GGTGTG 214 . INDEL;DP=16;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,3,12;MQ=58;FQ=-79.5 GT:PL:GQ 1/1:255,45,0:87 chr1 32669645 . C T 82 . DP=39;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,9,3,15;MQ=59;FQ=85;PV4=0.02,3.6e-12,0.15,1 GT:PL:GQ 0/1:112,0,255:99 chr1 32689857 . A G 46 . DP=6;VDB=0.0001;AF1=0.5016;AC1=1;DP4=0,1,4,1;MQ=60;FQ=-6.18;PV4=0.33,0.00058,1,0.35 GT:PL:GQ 0/1:76,0,22:25 chr1 32696776 . C T 111 . DP=36;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,8,4,17;MQ=60;FQ=114;PV4=0.25,6e-10,1,1 GT:PL:GQ 0/1:141,0,216:99 chr1 32860161 . T C 66 . DP=21;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,19;MQ=60;FQ=-84 GT:PL:GQ 1/1:99,57,0:99 chr1 33065947 . G C 222 . DP=122;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,57,58;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 33099798 . A G 21 . DP=11;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,6,0,5;MQ=60;FQ=24;PV4=1,2.2e-08,1,1 GT:PL:GQ 0/1:51,0,125:54 chr1 33117071 . T G 144 . DP=10;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,6;MQ=58;FQ=-57 GT:PL:GQ 1/1:177,30,0:57 chr1 33133968 . T C 171 . DP=78;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,50,25;MQ=60;FQ=-253 GT:PL:GQ 1/1:204,226,0:99 chr1 33134774 . A C 133 . DP=37;VDB=0.0118;AF1=0.5;AC1=1;DP4=6,12,6,13;MQ=59;FQ=136;PV4=1,7.4e-17,0.085,1 GT:PL:GQ 0/1:163,0,255:99 chr1 33134989 . A G 82.1 . DP=6;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,2,4;MQ=60;FQ=-45 GT:PL:GQ 1/1:115,18,0:33 chr1 33160878 . C T 202 . DP=87;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,53,29;MQ=60;FQ=-274 GT:PL:GQ 1/1:235,247,0:99 chr1 33161212 . T C 222 . DP=147;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,83,63;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 33231380 . T G 123 . DP=55;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,12,14,11;MQ=60;FQ=126;PV4=1,1.6e-09,1,1 GT:PL:GQ 0/1:153,0,255:99 chr1 33231403 . G T 225 . DP=53;VDB=0.0164;AF1=0.5;AC1=1;DP4=14,14,10,12;MQ=60;FQ=225;PV4=0.78,0.063,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 33233323 . A G 137 . DP=24;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,19,4;MQ=60;FQ=-96 GT:PL:GQ 1/1:170,69,0:99 chr1 33234128 . G A 3.01 . DP=6;VDB=0.0167;AF1=0.4997;AC1=1;DP4=4,0,2,0;MQ=60;FQ=4.77;PV4=1,0.005,1,0.089 GT:PL:GQ 0/1:30,0,107:28 chr1 33234136 . T C 135 . DP=7;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-48 GT:PL:GQ 1/1:168,21,0:39 chr1 33234153 . G A 148 . DP=11;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,1,6,2;MQ=60;FQ=29;PV4=1,1,1,0.24 GT:PL:GQ 0/1:178,0,56:59 chr1 33252099 . TCACATGCATGACTATTCCTAGCCCACATGCATGACTATT TCACATGCATGACTATT 115 . INDEL;DP=114;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,50,1,17;MQ=56;FQ=118;PV4=1,0.056,2.1e-18,0.36 GT:PL:GQ 0/1:153,0,255:99 chr1 33256884 . C A 148 . DP=29;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,5,6,14;MQ=60;FQ=132;PV4=0.67,2.6e-05,1,1 GT:PL:GQ 0/1:178,0,159:99 chr1 33276424 . G A 222 . DP=64;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,44,19;MQ=60;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr1 33293748 . T C 14.1 . DP=3;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:46,9,0:14 chr1 33318561 . T C 46.3 . DP=5;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:79,15,0:27 chr1 33318634 . G A 222 . DP=21;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,16,5;MQ=59;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 33330432 . A G 98 . DP=14;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,1,12;MQ=60;FQ=-66 GT:PL:GQ 1/1:131,39,0:75 chr1 33360999 . G A 225 . DP=48;VDB=0.0398;AF1=0.5;AC1=1;DP4=15,7,11,14;MQ=60;FQ=225;PV4=0.14,0.12,1,0.0074 GT:PL:GQ 0/1:255,0,255:99 chr1 33409551 . C T 225 . DP=45;VDB=0.0099;AF1=0.5;AC1=1;DP4=18,5,16,5;MQ=60;FQ=225;PV4=1,0.015,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 33409693 . G A 225 . DP=95;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,29,17,30;MQ=59;FQ=225;PV4=1,0.0079,0.29,1 GT:PL:GQ 0/1:255,0,255:99 chr1 33485789 . Aacacacacacacacacacacacacacacacacacacacaca Aacacacacacacacacacacacacacacacaca,AACACACacacacacacacacacacacacacacacacacacacacaca,Aacacacacacacacacacacacacacaca 34 . INDEL;DP=30;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,0,8;MQ=29;FQ=-46.5 GT:PL:GQ 1/1:126,64,52,78,0,69,109,40,55,106:21 chr1 33497070 . G A 128 . DP=8;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:161,21,0:39 chr1 33547768 . T C 5.46 . DP=9;VDB=0.0318;AF1=0.4999;AC1=1;DP4=4,1,3,0;MQ=56;FQ=7.8;PV4=1,0.021,1,0.014 GT:PL:GQ 0/1:34,0,104:34 chr1 33560338 . A G 222 . DP=31;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,3,26;MQ=60;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 33641932 . A G 220 . DP=34;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,15;MQ=60;FQ=-126 GT:PL:GQ 1/1:253,99,0:99 chr1 33646950 . A G 164 . DP=26;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,5,7,11;MQ=59;FQ=140;PV4=1,7.6e-10,0.26,1 GT:PL:GQ 0/1:194,0,167:99 chr1 33741615 . T A 137 . DP=18;VDB=0.0014;AF1=0.5;AC1=1;DP4=9,1,7,1;MQ=60;FQ=138;PV4=1,1,1,1 GT:PL:GQ 0/1:167,0,170:99 chr1 33760743 . T C 155 . DP=54;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,45,8;MQ=60;FQ=-187 GT:PL:GQ 1/1:188,160,0:99 chr1 33777524 . T C 68 . DP=27;VDB=0.0014;AF1=0.5;AC1=1;DP4=10,0,17,0;MQ=60;FQ=71;PV4=1,8.2e-08,1,0.42 GT:PL:GQ 0/1:98,0,133:99 chr1 33778226 . G A 124 . DP=10;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,4,2,4;MQ=60;FQ=68;PV4=0.47,0.043,1,1 GT:PL:GQ 0/1:154,0,95:98 chr1 33796834 . GAA GA 25.2 . INDEL;DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:64,6,0:10 chr1 33797107 . T C 4.13 . DP=3;VDB=0.0176;AF1=0.5006;AC1=1;DP4=0,1,1,1;MQ=60;FQ=-4.62;PV4=1,0.099,1,1 GT:PL:GQ 0/1:32,0,25:29 chr1 33832865 . A G 81 . DP=36;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,15,5,11;MQ=59;FQ=84;PV4=0.72,4.5e-13,0.44,1 GT:PL:GQ 0/1:111,0,255:99 chr1 33836796 . C G 125 . DP=10;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,3,1,6;MQ=60;FQ=34;PV4=1,1,1,0.2 GT:PL:GQ 0/1:155,0,61:64 chr1 33944993 . A G 134 . DP=45;VDB=0.0164;AF1=0.5;AC1=1;DP4=12,11,14,8;MQ=59;FQ=137;PV4=0.55,6.9e-11,0.16,1 GT:PL:GQ 0/1:164,0,255:99 chr1 33957130 . C A 146 . DP=48;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,8,12,8;MQ=59;FQ=149;PV4=1,3e-11,0.15,1 GT:PL:GQ 0/1:176,0,255:99 chr1 33957152 . T G 162 . DP=60;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,36,20;MQ=60;FQ=-196 GT:PL:GQ 1/1:195,169,0:99 chr1 33960062 . A G 222 . DP=78;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,44,33;MQ=59;FQ=-259 GT:PL:GQ 1/1:255,232,0:99 chr1 33961147 . T G 128 . DP=6;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:161,18,0:33 chr1 33985353 . C G 221 . DP=58;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,23,32;MQ=60;FQ=-193 GT:PL:GQ 1/1:254,166,0:99 chr1 34008297 . A G 43 . DP=15;VDB=0.0025;AF1=0.5;AC1=1;DP4=9,0,5,1;MQ=60;FQ=46;PV4=0.4,1.2e-07,1,1 GT:PL:GQ 0/1:73,0,155:76 chr1 34043169 . TCCCCCCC TCCCCCC 73.5 . INDEL;DP=17;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,4,11;MQ=60;FQ=-79.5 GT:PL:GQ 1/1:114,45,0:87 chr1 34052305 . C T 119 . DP=19;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,7,1,8;MQ=60;FQ=122;PV4=1,0.098,1,1 GT:PL:GQ 0/1:149,0,165:99 chr1 34071434 . C T 90 . DP=17;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,3,6,3;MQ=60;FQ=93;PV4=1,1.4e-05,1,1 GT:PL:GQ 0/1:120,0,188:99 chr1 34071525 . C T 51 . DP=26;VDB=0.0359;AF1=0.5;AC1=1;DP4=7,8,5,5;MQ=59;FQ=54;PV4=1,3.3e-11,0.11,0.33 GT:PL:GQ 0/1:81,0,255:84 chr1 34158472 . C T 171 . DP=26;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,23,3;MQ=60;FQ=-105 GT:PL:GQ 1/1:204,78,0:99 chr1 34158482 . C T 179 . DP=31;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,24,4;MQ=60;FQ=-111 GT:PL:GQ 1/1:212,84,0:99 chr1 34189917 . C T 215 . DP=39;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,19,5,11;MQ=60;FQ=218;PV4=0.24,0.17,1,0.46 GT:PL:GQ 0/1:245,0,255:99 chr1 34189957 . AGGGG AGGG 112 . INDEL;DP=16;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,13;MQ=60;FQ=-76.5 GT:PL:GQ 1/1:153,42,0:81 chr1 34238283 . T C 80 . DP=28;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,10,5,2;MQ=58;FQ=83;PV4=0.66,0.39,1,1 GT:PL:GQ 0/1:110,0,255:99 chr1 34270498 . G A 225 . DP=70;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,23,7,28;MQ=59;FQ=225;PV4=0.41,0.00093,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 34329897 . T C 222 . DP=79;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,59,18;MQ=60;FQ=-259 GT:PL:GQ 1/1:255,232,0:99 chr1 34330067 . A C 190 . DP=126;VDB=0.0399;AF1=0.5;AC1=1;DP4=34,29,27,33;MQ=59;FQ=193;PV4=0.37,7.1e-29,1,1 GT:PL:GQ 0/1:220,0,255:99 chr1 34630494 . C A 3.54 . DP=7;VDB=0.0102;AF1=0.4998;AC1=1;DP4=3,2,1,1;MQ=60;FQ=5.47;PV4=1,0.14,1,1 GT:PL:GQ 0/1:31,0,114:30 chr1 34684463 . G A 10.4 . DP=7;VDB=0.0143;AF1=0.5;AC1=1;DP4=0,3,1,3;MQ=60;FQ=13.2;PV4=1,0.0026,1,0.14 GT:PL:GQ 0/1:40,0,66:42 chr1 35183838 . A C 9.52 . DP=21;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,0,6,0;MQ=58;FQ=12.3;PV4=1,5.2e-08,1,0.16 GT:PL:GQ 0/1:39,0,141:41 chr1 35184033 . C T 220 . DP=35;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,14,3,13;MQ=59;FQ=195;PV4=1,1,0.16,0.44 GT:PL:GQ 0/1:250,0,222:99 chr1 35184034 . G A 95 . DP=32;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,13,2,14;MQ=59;FQ=98;PV4=1,2.2e-11,1,1 GT:PL:GQ 0/1:125,0,250:99 chr1 35184084 . C T 109 . DP=13;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,5,1,6;MQ=58;FQ=111;PV4=1,0.079,0.19,1 GT:PL:GQ 0/1:139,0,144:99 chr1 35223345 . G A 87 . DP=64;VDB=0.0398;AF1=0.5;AC1=1;DP4=23,11,21,7;MQ=60;FQ=90;PV4=0.58,3.4e-26,1,1 GT:PL:GQ 0/1:117,0,255:99 chr1 35223881 . G A 28 . DP=4;VDB=0.0030;AF1=0.5004;AC1=1;DP4=0,1,1,1;MQ=60;FQ=3.54;PV4=1,0.2,1,1 GT:PL:GQ 0/1:58,0,28:31 chr1 35259961 . A G 222 . DP=113;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,62,46;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 35260202 . G A 225 . DP=63;VDB=0.0398;AF1=0.5;AC1=1;DP4=15,12,20,15;MQ=60;FQ=225;PV4=1,0.05,1,0.11 GT:PL:GQ 0/1:255,0,255:99 chr1 35260929 . G A 48.5 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:81,12,0:21 chr1 35321242 . A C 92 . DP=89;VDB=0.0399;AF1=0.5;AC1=1;DP4=32,22,20,15;MQ=60;FQ=95;PV4=1,6.9e-38,1,0.21 GT:PL:GQ 0/1:122,0,255:99 chr1 35333126 . T C 225 . DP=47;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,11,12,11;MQ=60;FQ=225;PV4=1,1,1,0.31 GT:PL:GQ 0/1:255,0,255:99 chr1 35370419 . G A 168 . DP=37;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,11,8,6;MQ=60;FQ=171;PV4=1,0.092,1,1 GT:PL:GQ 0/1:198,0,255:99 chr1 35561510 . G A 162 . DP=18;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,9,9;MQ=59;FQ=-81 GT:PL:GQ 1/1:195,54,0:99 chr1 35561519 . G A 65 . DP=15;VDB=0.0218;AF1=0.5;AC1=1;DP4=5,6,1,3;MQ=58;FQ=68;PV4=0.6,0.39,1,1 GT:PL:GQ 0/1:95,0,252:98 chr1 35562965 . G A 222 . DP=141;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,86,51;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 35563206 . C G 93 . DP=45;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,44;MQ=60;FQ=-159 GT:PL:GQ 1/1:126,132,0:99 chr1 35855476 . G C 131 . DP=26;VDB=0.0081;AF1=0.5;AC1=1;DP4=12,0,14,0;MQ=60;FQ=132;PV4=1,0.12,1,1 GT:PL:GQ 0/1:161,0,163:99 chr1 35925861 . C A 128 . DP=45;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,33,10;MQ=59;FQ=-156 GT:PL:GQ 1/1:161,129,0:99 chr1 35928179 . G A 63 . DP=12;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,2,5,1;MQ=60;FQ=66;PV4=0.55,6.9e-05,1,1 GT:PL:GQ 0/1:93,0,138:96 chr1 36070909 . A G 225 . DP=69;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,31,12,20;MQ=60;FQ=225;PV4=0.057,1,1,0.026 GT:PL:GQ 0/1:255,0,255:99 chr1 36205166 . A G 99 . DP=25;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,25;MQ=60;FQ=-102 GT:PL:GQ 1/1:132,75,0:99 chr1 36213712 . G T 175 . DP=25;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,4,20;MQ=59;FQ=-99 GT:PL:GQ 1/1:208,72,0:99 chr1 36298271 . C T 4.13 . DP=4;VDB=0.0192;AF1=0.4998;AC1=1;DP4=0,2,0,2;MQ=60;FQ=6.18;PV4=1,0.012,1,1 GT:PL:GQ 0/1:32,0,54:31 chr1 36307412 . catatatatatatatatatatatatata catatatatatatatatatatatata 23.2 . INDEL;DP=6;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:62,6,0:10 chr1 36316418 . caaaaaaaaaa cAaaaaaaaaaa,cAAaaaaaaaaaa 6.54 . INDEL;DP=31;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,14,3;MQ=56;FQ=-82.5 GT:PL:GQ 1/1:46,48,0,41,31,38:50 chr1 36316571 . A C 206 . DP=62;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,49;MQ=58;FQ=-199 GT:PL:GQ 1/1:239,172,0:99 chr1 36553673 . A G 222 . DP=46;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,30,11;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 36556779 . caaaaaa caaaaa 29.5 . INDEL;DP=54;VDB=0.0345;AF1=0.5;AC1=1;DP4=25,1,23,4;MQ=59;FQ=9.92;PV4=0.35,8.1e-16,0.082,0.22 GT:PL:GQ 0/1:67,0,44:47 chr1 36563158 . C A 59.1 . DP=7;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,5,2;MQ=60;FQ=-48 GT:PL:GQ 1/1:92,21,0:39 chr1 36565584 . C G 84.5 . DP=4;VDB=0.0095;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:117,12,0:21 chr1 36565617 . G A 161 . DP=15;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,10,4;MQ=60;FQ=-69 GT:PL:GQ 1/1:194,42,0:81 chr1 36602943 . C T 180 . DP=11;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:213,33,0:63 chr1 36642420 . T C 56.5 . DP=4;VDB=0.0017;AF1=1;AC1=2;DP4=0,0,2,2;MQ=60;FQ=-39 GT:PL:GQ 1/1:89,12,0:21 chr1 36752152 . C T 160 . DP=64;VDB=0.0400;AF1=0.5;AC1=1;DP4=21,9,18,15;MQ=60;FQ=163;PV4=0.3,6.5e-21,0.17,1 GT:PL:GQ 0/1:190,0,255:99 chr1 36752433 . C T 222 . DP=62;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,12,46;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 36762396 . C T 46 . DP=10;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:79,30,0:57 chr1 36767400 . C T 222 . DP=20;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,3,16;MQ=58;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr1 36773405 . T G 133 . DP=119;VDB=0.0392;AF1=0.5;AC1=1;DP4=27,36,25,30;MQ=60;FQ=136;PV4=0.85,3.4e-42,1,1 GT:PL:GQ 0/1:163,0,255:99 chr1 36773819 . C G 181 . DP=18;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,5,13;MQ=59;FQ=-81 GT:PL:GQ 1/1:214,54,0:99 chr1 36786435 . G A 108 . DP=37;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,9,11,6;MQ=59;FQ=111;PV4=0.5,9.5e-11,0.16,1 GT:PL:GQ 0/1:138,0,255:99 chr1 36788356 . A G 69.1 . DP=6;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,3,3;MQ=60;FQ=-45 GT:PL:GQ 1/1:102,18,0:33 chr1 36824321 . C T 67 . DP=34;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,3,15,2;MQ=59;FQ=70;PV4=0.66,2.4e-11,1,1 GT:PL:GQ 0/1:97,0,226:99 chr1 36859578 . G A 222 . DP=141;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,62,70;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 36883946 . T C 222 . DP=36;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,6,29;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 36884527 . caa cAaa 5.79 . INDEL;DP=5;VDB=0.0140;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=55;FQ=7.91;PV4=1,1,1,1 GT:PL:GQ 0/1:42,0,53:43 chr1 36886117 . C T 222 . DP=52;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,37,15;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 36887702 . C T 217 . DP=42;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,30,11;MQ=59;FQ=-150 GT:PL:GQ 1/1:250,123,0:99 chr1 36889197 . T C 15.9 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,0,2;MQ=47;FQ=-33 GT:PL:GQ 1/1:47,6,0:10 chr1 36898067 . T C 160 . DP=38;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,33,3;MQ=59;FQ=-135 GT:PL:GQ 1/1:193,108,0:99 chr1 36898332 . C T 78 . DP=15;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:111,36,0:69 chr1 36926961 . G A 109 . DP=66;VDB=0.0399;AF1=1;AC1=2;DP4=1,1,31,28;MQ=59;FQ=-157;PV4=1,1.2e-08,1,0.14 GT:PL:GQ 1/1:142,130,0:99 chr1 36927733 . G A 125 . DP=35;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,25,7;MQ=60;FQ=-123 GT:PL:GQ 1/1:158,96,0:99 chr1 36929673 . C T 193 . DP=79;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,47,27;MQ=60;FQ=-250 GT:PL:GQ 1/1:226,223,0:99 chr1 36937059 . A G 156 . DP=23;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,16,7;MQ=60;FQ=-96 GT:PL:GQ 1/1:189,69,0:99 chr1 37324683 . A C 51 . DP=19;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,1,12,0;MQ=59;FQ=54;PV4=0.37,1.3e-06,0.23,1 GT:PL:GQ 0/1:81,0,128:84 chr1 37324935 . T C 20 . DP=27;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,18,2,7;MQ=60;FQ=23;PV4=0.1,8.8e-09,1,1 GT:PL:GQ 0/1:50,0,175:53 chr1 37325477 . A C 59 . DP=13;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,0,5,3;MQ=60;FQ=62;PV4=0.23,1.4e-07,1,0.089 GT:PL:GQ 0/1:89,0,108:92 chr1 37335458 . A G 192 . DP=11;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:225,33,0:63 chr1 37335485 . A G 55.3 . DP=5;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:88,15,0:27 chr1 37626981 . T C 28 . DP=3;VDB=0.0030;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:60,9,0:16 chr1 37627280 . C T 12.3 . DP=36;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,16,1,9;MQ=59;FQ=15.1;PV4=0.64,1e-17,1,1 GT:PL:GQ 0/1:42,0,255:44 chr1 37948212 . C G 134 . DP=153;VDB=0.0393;AF1=0.5;AC1=1;DP4=47,36,32,32;MQ=59;FQ=137;PV4=0.5,3.6e-59,1,0.33 GT:PL:GQ 0/1:164,0,255:99 chr1 37959450 . T C 222 . DP=62;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,22,38;MQ=59;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr1 37959470 . C G 222 . DP=55;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,39;MQ=59;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr1 37961613 . A G 65 . DP=20;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,10,1,7;MQ=60;FQ=68;PV4=1,1.8e-05,1,0.47 GT:PL:GQ 0/1:95,0,202:98 chr1 37967649 . C T 143 . DP=27;VDB=0.0099;AF1=0.5;AC1=1;DP4=3,10,2,10;MQ=58;FQ=146;PV4=1,0.036,0.068,0.017 GT:PL:GQ 0/1:173,0,247:99 chr1 38006359 . A G 150 . DP=43;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,10,33;MQ=59;FQ=-156 GT:PL:GQ 1/1:183,129,0:99 chr1 38018134 . C T 95 . DP=28;VDB=0.0066;AF1=0.5;AC1=1;DP4=18,0,9,0;MQ=60;FQ=98;PV4=1,0.064,1,0.47 GT:PL:GQ 0/1:125,0,183:99 chr1 38022452 . C A 49.1 . DP=9;VDB=0.0008;AF1=0.5102;AC1=1;DP4=1,0,8,0;MQ=60;FQ=-13.2;PV4=1,0.00019,1,0.11 GT:PL:GQ 0/1:79,0,14:17 chr1 38030696 . T C 21 . DP=23;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,11,0,11;MQ=60;FQ=24;PV4=1,1.6e-15,1,1 GT:PL:GQ 0/1:51,0,188:54 chr1 38046920 . G T 222 . DP=57;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,43,12;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 38049373 . C T 225 . DP=45;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,6,12,6;MQ=59;FQ=225;PV4=0.51,0.088,0.12,0.3 GT:PL:GQ 0/1:255,0,255:99 chr1 38049552 . C G 188 . DP=80;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,22,54;MQ=59;FQ=-256 GT:PL:GQ 1/1:221,229,0:99 chr1 38049566 . G A 74 . DP=69;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,37,6,16;MQ=59;FQ=77;PV4=0.54,1.6e-18,1,0.13 GT:PL:GQ 0/1:104,0,255:99 chr1 38078300 . A G 202 . DP=15;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,14,1;MQ=60;FQ=-72 GT:PL:GQ 1/1:235,45,0:87 chr1 38079517 . T G 21 . DP=33;VDB=0.0244;AF1=0.5;AC1=1;DP4=15,10,5,2;MQ=59;FQ=24;PV4=0.68,1.3e-06,1,1 GT:PL:GQ 0/1:51,0,255:54 chr1 38148833 . C A 225 . DP=56;VDB=0.0400;AF1=0.5;AC1=1;DP4=18,13,19,5;MQ=60;FQ=225;PV4=0.15,1,1,0.21 GT:PL:GQ 0/1:255,0,255:99 chr1 38218735 . C A 4.77 . DP=4;VDB=0.0104;AF1=0.4999;AC1=1;DP4=2,0,1,1;MQ=60;FQ=6.97;PV4=1,0.052,1,0.39 GT:PL:GQ 0/1:33,0,58:33 chr1 38269534 . T A 10.4 . DP=5;VDB=0.0163;AF1=0.5;AC1=1;DP4=3,0,1,1;MQ=60;FQ=13.2;PV4=0.4,0.068,1,0.24 GT:PL:GQ 0/1:40,0,81:42 chr1 38272660 . G A 29 . DP=92;VDB=0.0365;AF1=0.5;AC1=1;DP4=24,23,16,10;MQ=60;FQ=32;PV4=0.47,1.7e-31,1,0.22 GT:PL:GQ 0/1:59,0,255:62 chr1 38289383 . T C 126 . DP=74;VDB=0.0400;AF1=0.5;AC1=1;DP4=21,19,16,15;MQ=60;FQ=129;PV4=1,2.3e-28,1,0.085 GT:PL:GQ 0/1:156,0,255:99 chr1 38292160 . G A 79 . DP=6;VDB=0.0033;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=26;PV4=1,1,1,1 GT:PL:GQ 0/1:109,0,53:56 chr1 38293992 . C T 72 . DP=12;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:105,33,0:63 chr1 38301250 . A G 70 . DP=11;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:103,33,0:63 chr1 38301476 . G A 197 . DP=35;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,30;MQ=59;FQ=-120 GT:PL:GQ 1/1:230,93,0:99 chr1 38306356 . T C 11.3 . DP=9;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=14.2;PV4=1,0.0019,1,0.25 GT:PL:GQ 0/1:41,0,95:43 chr1 38327982 . G T 222 . DP=58;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,42,8;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 38328154 . gacacaca gacaca 185 . INDEL;DP=36;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,18,0,16;MQ=59;FQ=188;PV4=1,0.015,1,1 GT:PL:GQ 0/1:223,0,255:99 chr1 38329999 . C G 175 . DP=106;VDB=0.0398;AF1=0.5;AC1=1;DP4=21,20,25,35;MQ=60;FQ=178;PV4=0.42,4.2e-35,1,1 GT:PL:GQ 0/1:205,0,255:99 chr1 38332078 . tc tCTCAc 145 . INDEL;DP=31;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,2,8,1;MQ=56;FQ=102;PV4=1,1,1,1 GT:PL:GQ 0/1:183,0,137:99 chr1 38338795 . A G 222 . DP=131;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,50,79;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 38345896 . A C 222 . DP=20;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,3,14;MQ=60;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr1 38348506 . G A 99 . DP=43;VDB=0.0393;AF1=0.5;AC1=1;DP4=18,5,10,8;MQ=60;FQ=102;PV4=0.18,5.8e-18,1,0.32 GT:PL:GQ 0/1:129,0,255:99 chr1 38352849 . G C 12.7 . DP=4;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:45,12,0:18 chr1 38397341 . G A 196 . DP=35;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,7;MQ=59;FQ=-123 GT:PL:GQ 1/1:229,96,0:99 chr1 38397369 . C T 222 . DP=42;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,33,9;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 38411275 . A G 4.13 . DP=11;VDB=0.0287;AF1=0.4998;AC1=1;DP4=7,0,4,0;MQ=60;FQ=6.2;PV4=1,4e-06,1,1 GT:PL:GQ 0/1:32,0,139:31 chr1 38411350 . C T 225 . DP=41;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,5,18,6;MQ=60;FQ=223;PV4=0.73,0.47,1,0.37 GT:PL:GQ 0/1:255,0,251:99 chr1 38423853 . G C 77 . DP=7;VDB=0.0008;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=24;PV4=1,0.27,1,1 GT:PL:GQ 0/1:107,0,51:54 chr1 38425895 . T C 36 . DP=27;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,13,5,2;MQ=60;FQ=39;PV4=0.075,5.1e-09,1,1 GT:PL:GQ 0/1:66,0,255:69 chr1 38442547 . G A 153 . DP=152;VDB=0.0380;AF1=0.5;AC1=1;DP4=31,56,28,34;MQ=60;FQ=156;PV4=0.31,1.5e-48,1,0.45 GT:PL:GQ 0/1:183,0,255:99 chr1 38450367 . A G 225 . DP=136;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,38,35,34;MQ=60;FQ=225;PV4=0.16,1,1,0.47 GT:PL:GQ 0/1:255,0,255:99 chr1 38462898 . T A 181 . DP=42;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,29,8;MQ=59;FQ=-138 GT:PL:GQ 1/1:214,111,0:99 chr1 38462905 . C G 119 . DP=48;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,20,9;MQ=59;FQ=-114 GT:PL:GQ 1/1:152,87,0:99 chr1 38464639 . C G 222 . DP=111;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,73,37;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 39325063 . T C 58.5 . DP=4;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,2,2;MQ=54;FQ=-39 GT:PL:GQ 1/1:91,12,0:21 chr1 39339449 . C T 196 . DP=32;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,9;MQ=59;FQ=-123 GT:PL:GQ 1/1:229,96,0:99 chr1 39340282 . C T 222 . DP=79;VDB=0.0392;AF1=1;AC1=2;DP4=1,0,44,32;MQ=59;FQ=-219;PV4=1,0.15,0.44,0.27 GT:PL:GQ 1/1:255,192,0:99 chr1 39340558 . G A 131 . DP=82;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,15,31,14;MQ=60;FQ=134;PV4=0.49,4.4e-29,1,1 GT:PL:GQ 0/1:161,0,255:99 chr1 39352271 . G T 222 . DP=122;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,87,34;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 39352492 . G A 44 . DP=8;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:77,24,0:45 chr1 39361615 . G A 222 . DP=25;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,18,5;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr1 39385086 . A C 89.3 . DP=5;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:122,15,0:27 chr1 39466626 . A G 47 . DP=10;VDB=0.0161;AF1=0.5;AC1=1;DP4=6,0,3,0;MQ=60;FQ=50;PV4=1,1,1,1 GT:PL:GQ 0/1:77,0,128:80 chr1 39466786 . C G 107 . DP=54;VDB=0.0271;AF1=0.5;AC1=1;DP4=15,14,12,13;MQ=60;FQ=110;PV4=1,2e-22,1,1 GT:PL:GQ 0/1:137,0,255:99 chr1 39494687 . G A 31 . DP=18;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,10,0,8;MQ=56;FQ=34;PV4=1,1.5e-07,1,1 GT:PL:GQ 0/1:61,0,144:64 chr1 39549983 . G A 157 . DP=126;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,33,25,39;MQ=60;FQ=160;PV4=1,1.2e-30,1,1 GT:PL:GQ 0/1:187,0,255:99 chr1 39550210 . C T 13.9 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr1 39568765 . T C 6.2 . DP=3;VDB=0.0184;AF1=0.5004;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-3.33;PV4=1,0.18,1,0.33 GT:PL:GQ 0/1:35,0,27:31 chr1 39571211 . T C 22.8 . DP=2;VDB=0.0178;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:54,6,0:10 chr1 39717566 . T C 222 . DP=13;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,6,7;MQ=60;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr1 39719812 . G A 21 . DP=8;VDB=0.0042;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=24;PV4=1,0.00023,1,1 GT:PL:GQ 0/1:51,0,77:54 chr1 39748921 . G A 57 . DP=46;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,5,17,2;MQ=59;FQ=60;PV4=0.68,1.6e-15,0.13,0.33 GT:PL:GQ 0/1:87,0,255:90 chr1 39757799 . G C 66 . DP=32;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,15,2,9;MQ=59;FQ=69;PV4=1,7.3e-13,1,1 GT:PL:GQ 0/1:96,0,255:99 chr1 39758634 . G A 163 . DP=134;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,54,15,50;MQ=60;FQ=166;PV4=0.51,1.4e-46,1,1 GT:PL:GQ 0/1:193,0,255:99 chr1 39763242 . G A 160 . DP=92;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,9,42,12;MQ=59;FQ=163;PV4=0.8,1e-28,0.083,1 GT:PL:GQ 0/1:190,0,255:99 chr1 39766041 . A G 37 . DP=27;VDB=0.0398;AF1=0.5;AC1=1;DP4=0,13,0,13;MQ=60;FQ=40;PV4=1,2.2e-10,1,1 GT:PL:GQ 0/1:67,0,166:70 chr1 39766055 . C T 34 . DP=19;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,11,0,7;MQ=60;FQ=37;PV4=1,3.7e-05,1,1 GT:PL:GQ 0/1:64,0,156:67 chr1 39797055 . A G 180 . DP=31;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,9,7,4;MQ=59;FQ=183;PV4=0.71,0.13,1,0.4 GT:PL:GQ 0/1:210,0,255:99 chr1 39801815 . A C 66 . DP=49;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,13,12,6;MQ=60;FQ=69;PV4=0.54,4e-21,1,1 GT:PL:GQ 0/1:96,0,255:99 chr1 39806610 . C T 222 . DP=84;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,24,53;MQ=59;FQ=-259 GT:PL:GQ 1/1:255,232,0:99 chr1 39812620 . G T 144 . DP=30;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,19,6;MQ=60;FQ=-102 GT:PL:GQ 1/1:177,75,0:99 chr1 39812822 . C A 126 . DP=33;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,1,31;MQ=59;FQ=-123 GT:PL:GQ 1/1:159,96,0:99 chr1 39815143 . T A 15.1 . DP=103;VDB=0.0298;AF1=0.5;AC1=1;DP4=35,13,16,10;MQ=60;FQ=18.1;PV4=0.43,1.3e-45,1,1 GT:PL:GQ 0/1:45,0,255:48 chr1 39815344 . G A 81 . DP=18;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,9,0,7;MQ=60;FQ=84;PV4=1,0.014,1,1 GT:PL:GQ 0/1:111,0,189:99 chr1 39823032 . ATTTTTTTTT ATTTTTTTTTT 11.8 . INDEL;DP=95;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,19,18,26;MQ=60;FQ=4.86;PV4=0.51,1,1,0.31 GT:PL:GQ 0/1:49,0,38:41 chr1 39824718 . C G 52 . DP=8;VDB=0.0049;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=55;PV4=1,0.025,1,0.23 GT:PL:GQ 0/1:82,0,102:85 chr1 39835817 . A G 225 . DP=66;VDB=0.0400;AF1=0.5;AC1=1;DP4=18,12,22,13;MQ=59;FQ=225;PV4=1,0.47,0.095,0.081 GT:PL:GQ 0/1:255,0,255:99 chr1 39843958 . G A 33 . DP=8;VDB=0.0156;AF1=0.5;AC1=1;DP4=5,0,3,0;MQ=60;FQ=36;PV4=1,0.11,1,0.28 GT:PL:GQ 0/1:63,0,117:66 chr1 39879366 . T C 20.1 . DP=6;VDB=0.0156;AF1=0.5;AC1=1;DP4=2,0,2,1;MQ=60;FQ=12;PV4=1,0.27,1,1 GT:PL:GQ 0/1:50,0,39:42 chr1 39889677 . G A 90 . DP=24;VDB=0.0216;AF1=0.5;AC1=1;DP4=11,2,8,3;MQ=59;FQ=93;PV4=0.63,1.2e-09,0.14,0.35 GT:PL:GQ 0/1:120,0,219:99 chr1 39893093 . C T 22 . DP=21;VDB=0.0066;AF1=0.5;AC1=1;DP4=10,1,7,2;MQ=59;FQ=25;PV4=0.57,1.1e-11,0.14,1 GT:PL:GQ 0/1:52,0,191:55 chr1 39895460 . G A 49 . DP=16;VDB=0.0216;AF1=0.5;AC1=1;DP4=5,2,9,0;MQ=60;FQ=52;PV4=0.17,1.4e-09,1,0.19 GT:PL:GQ 0/1:79,0,174:82 chr1 39908506 . G A 66 . DP=39;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,6,14,2;MQ=60;FQ=69;PV4=0.43,3.7e-13,1,0.04 GT:PL:GQ 0/1:96,0,255:99 chr1 39913351 . A G 225 . DP=106;VDB=0.0392;AF1=0.5;AC1=1;DP4=24,18,40,19;MQ=60;FQ=225;PV4=0.3,0.034,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 39914363 . G C 225 . DP=87;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,30,12,23;MQ=60;FQ=225;PV4=0.65,0.19,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 39927507 . G A 96 . DP=28;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,27,1;MQ=59;FQ=-111 GT:PL:GQ 1/1:129,84,0:99 chr1 39929240 . T C 80 . DP=95;VDB=0.0244;AF1=0.5;AC1=1;DP4=39,8,38,6;MQ=60;FQ=83;PV4=0.77,8.4e-49,1,1 GT:PL:GQ 0/1:110,0,255:99 chr1 39957913 . A G 189 . DP=15;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,13,1;MQ=55;FQ=-69 GT:PL:GQ 1/1:222,42,0:81 chr1 39958080 . C G 34.5 . DP=4;VDB=0.0333;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:67,12,0:21 chr1 39981522 . G A 204 . DP=50;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,18,9,16;MQ=39;FQ=199;PV4=0.54,0.19,0.46,1 GT:PL:GQ 0/1:234,0,227:99 chr1 39988034 . C T 4.77 . DP=8;VDB=0.0161;AF1=0.4999;AC1=1;DP4=4,1,2,0;MQ=50;FQ=6.99;PV4=1,0.18,0.0093,1 GT:PL:GQ 0/1:33,0,133:33 chr1 39988084 . G A 82 . DP=23;VDB=0.0014;AF1=0.5;AC1=1;DP4=10,3,7,3;MQ=42;FQ=85;PV4=1,0.43,5.6e-06,1 GT:PL:GQ 0/1:112,0,212:99 chr1 39991588 . G T 59 . DP=21;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,10,0,11;MQ=60;FQ=62;PV4=1,3.1e-07,1,0.06 GT:PL:GQ 0/1:89,0,148:92 chr1 40028180 . A G 157 . DP=36;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,17,1,14;MQ=60;FQ=160;PV4=0.38,0.27,1,1 GT:PL:GQ 0/1:187,0,255:99 chr1 40035686 . C T 168 . DP=124;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,40,14,53;MQ=60;FQ=171;PV4=1,6.6e-51,0.11,1 GT:PL:GQ 0/1:198,0,255:99 chr1 40037354 . C G 14.2 . DP=6;VDB=0.0040;AF1=0.5;AC1=1;DP4=1,2,1,2;MQ=60;FQ=17.1;PV4=1,0.00024,1,1 GT:PL:GQ 0/1:44,0,81:47 chr1 40041371 . GAA GAAA 76.5 . INDEL;DP=9;VDB=0.0053;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=39.5;PV4=1,1,1,1 GT:PL:GQ 0/1:114,0,74:77 chr1 40092089 . T C 222 . DP=16;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,12,4;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 40098328 . T C 222 . DP=42;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,21,18;MQ=60;FQ=-108;PV4=1,0.2,1,1 GT:PL:GQ 1/1:255,81,0:99 chr1 40125077 . T C 133 . DP=48;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,19,10,8;MQ=60;FQ=136;PV4=0.23,1.7e-06,1,0.5 GT:PL:GQ 0/1:163,0,255:99 chr1 40149642 . G T 213 . DP=35;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,25,8;MQ=59;FQ=-126 GT:PL:GQ 1/1:246,99,0:99 chr1 40149870 . C G 99 . DP=11;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,2,8;MQ=55;FQ=-57 GT:PL:GQ 1/1:132,30,0:57 chr1 40149875 . C T 77 . DP=9;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,2,6;MQ=54;FQ=-51 GT:PL:GQ 1/1:110,24,0:45 chr1 40149938 . T C 16.9 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,1;MQ=47;FQ=-33 GT:PL:GQ 1/1:48,6,0:10 chr1 40150156 . G A 222 . DP=46;VDB=0.0298;AF1=1;AC1=2;DP4=1,0,27,18;MQ=59;FQ=-147;PV4=1,1,0.44,0.27 GT:PL:GQ 1/1:255,120,0:99 chr1 40207169 . T G 55 . DP=67;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,23,4,27;MQ=60;FQ=58;PV4=0.081,2e-30,1,1 GT:PL:GQ 0/1:85,0,255:88 chr1 40219065 . C T 59 . DP=63;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,26,4,29;MQ=59;FQ=62;PV4=1,1.2e-26,1,1 GT:PL:GQ 0/1:89,0,240:92 chr1 40229319 . G A 85 . DP=24;VDB=0.0244;AF1=0.5;AC1=1;DP4=10,4,9,1;MQ=40;FQ=88;PV4=0.36,0.075,0.0088,0.086 GT:PL:GQ 0/1:115,0,218:99 chr1 40229368 . A G 69 . DP=37;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,7,15,4;MQ=44;FQ=72;PV4=0.3,1.6e-20,4.8e-08,0.12 GT:PL:GQ 0/1:99,0,255:99 chr1 40230531 . C T 9.52 . DP=18;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,10,0,6;MQ=34;FQ=12.3;PV4=1,0.00094,1,0.37 GT:PL:GQ 0/1:39,0,114:41 chr1 40236724 . C A 5.29 . DP=2;VDB=0.0135;AF1=1;AC1=2;DP4=0,0,1,1;MQ=22;FQ=-33 GT:PL:GQ 1/1:35,6,0:6 chr1 40313018 . C G 38 . DP=30;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,12,5,4;MQ=59;FQ=41;PV4=0.69,2.8e-07,1,1 GT:PL:GQ 0/1:68,0,255:71 chr1 40313849 . T C 14.2 . DP=30;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,18,0,7;MQ=60;FQ=17.1;PV4=1,1.2e-07,1,0.33 GT:PL:GQ 0/1:44,0,209:47 chr1 40319587 . A C 158 . DP=121;VDB=0.0365;AF1=0.5;AC1=1;DP4=37,26,40,18;MQ=59;FQ=161;PV4=0.26,3.1e-52,0.47,0.28 GT:PL:GQ 0/1:188,0,255:99 chr1 40349131 . G A 64 . DP=15;VDB=0.0325;AF1=0.5;AC1=1;DP4=3,4,2,6;MQ=58;FQ=67;PV4=0.61,2.9e-06,1,0.091 GT:PL:GQ 0/1:94,0,154:97 chr1 40363054 . G C 222 . DP=38;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,26,10;MQ=60;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 40367592 . A G 56.5 . DP=4;VDB=0.0110;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:89,12,0:21 chr1 40525993 . G C 54 . DP=9;VDB=0.0025;AF1=0.5;AC1=1;DP4=1,1,0,6;MQ=60;FQ=18.1;PV4=0.25,0.0096,1,1 GT:PL:GQ 0/1:84,0,45:48 chr1 40526003 . T C 44.3 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:77,15,0:27 chr1 40533266 . T G 199 . DP=27;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,20,6;MQ=51;FQ=-105 GT:PL:GQ 1/1:232,78,0:99 chr1 40533287 . T G 211 . DP=26;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,13,8;MQ=50;FQ=-90 GT:PL:GQ 1/1:244,63,0:99 chr1 40533315 . T G 209 . DP=33;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,13,20;MQ=53;FQ=-126 GT:PL:GQ 1/1:242,99,0:99 chr1 40533320 . T G 222 . DP=34;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,13,20;MQ=52;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 40533326 . T G 222 . DP=32;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,9,22;MQ=51;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 40533347 . T G 222 . DP=32;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,10,22;MQ=55;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr1 40536074 . C CT 214 . INDEL;DP=93;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,37,54;MQ=60;FQ=-290 GT:PL:GQ 1/1:255,255,0:99 chr1 40545964 . T G 191 . DP=46;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,35,10;MQ=59;FQ=-162 GT:PL:GQ 1/1:224,135,0:99 chr1 40546209 . C T 137 . DP=31;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,16,0,14;MQ=59;FQ=140;PV4=1,1,0.14,1 GT:PL:GQ 0/1:167,0,211:99 chr1 40555321 . C T 40.8 . DP=2;VDB=0.0171;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:72,6,0:10 chr1 40556922 . T C 222 . DP=48;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,41,6;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 40557656 . G A 99 . DP=24;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,22,1;MQ=59;FQ=-96 GT:PL:GQ 1/1:132,69,0:99 chr1 40558256 . C G 88.5 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:121,12,0:21 chr1 40703244 . G A 163 . DP=140;VDB=0.0399;AF1=0.5;AC1=1;DP4=34,39,37,24;MQ=60;FQ=166;PV4=0.12,6.8e-57,0.45,1 GT:PL:GQ 0/1:193,0,255:99 chr1 40733658 . A G 55 . DP=18;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,12,0,4;MQ=60;FQ=58;PV4=1,1,1,1 GT:PL:GQ 0/1:85,0,174:88 chr1 40737516 . T G 29.1 . DP=14;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,7,0;MQ=57;FQ=-48 GT:PL:GQ 1/1:62,21,0:38 chr1 40771973 . C G 225 . DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,19,7,24;MQ=60;FQ=225;PV4=0.39,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 40773149 . T C 127 . DP=34;VDB=0.0343;AF1=0.5;AC1=1;DP4=11,5,11,6;MQ=60;FQ=130;PV4=1,6.1e-11,1,0.096 GT:PL:GQ 0/1:157,0,255:99 chr1 40775926 . A G 114 . DP=59;VDB=0.0393;AF1=0.5;AC1=1;DP4=19,20,10,9;MQ=60;FQ=117;PV4=1,2.1e-14,0.077,0.39 GT:PL:GQ 0/1:144,0,255:99 chr1 40777800 . T G 94 . DP=22;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,3,6,8;MQ=60;FQ=97;PV4=0.66,1.1e-09,1,1 GT:PL:GQ 0/1:124,0,161:99 chr1 40777842 . A G 90 . DP=23;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,5,5,8;MQ=58;FQ=93;PV4=1,9.6e-11,0.12,1 GT:PL:GQ 0/1:120,0,200:99 chr1 40778377 . C T 204 . DP=31;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,10,4,11;MQ=60;FQ=204;PV4=1,0.29,1,1 GT:PL:GQ 0/1:234,0,235:99 chr1 40840266 . tgcg tg 82.5 . INDEL;DP=39;VDB=0.0140;AF1=0.5;AC1=1;DP4=20,1,4,1;MQ=58;FQ=85.5;PV4=0.35,0.33,1,0.0071 GT:PL:GQ 0/1:120,0,255:99 chr1 40840296 . tgAGAGAGAGAGAGAGAGA tGAgAGAGAGAGAGAGAGAGA 170 . INDEL;DP=70;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,3,6,2;MQ=58;FQ=146;PV4=1,1,1,1 GT:PL:GQ 0/1:208,0,181:99 chr1 40879808 . G T,C 205 . DP=88;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,64,20;MQ=59;FQ=-277 GT:PL:GQ 1/1:238,250,0,234,226,231:99 chr1 40881041 . C G 147 . DP=63;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,24,32;MQ=60;FQ=-196 GT:PL:GQ 1/1:180,169,0:99 chr1 40955156 . A T 135 . DP=8;VDB=0.0042;AF1=0.5;AC1=1;DP4=2,0,4,2;MQ=60;FQ=24;PV4=1,0.11,1,0.3 GT:PL:GQ 0/1:165,0,51:54 chr1 40980559 . G A 99 . DP=70;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,31,12,19;MQ=60;FQ=102;PV4=0.053,6.8e-34,1,1 GT:PL:GQ 0/1:129,0,255:99 chr1 40980731 . G T 52 . DP=26;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,7,4,5;MQ=60;FQ=55;PV4=0.69,1.5e-06,1,1 GT:PL:GQ 0/1:82,0,255:85 chr1 40998811 . A G 225 . DP=40;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,9,7,11;MQ=60;FQ=225;PV4=0.34,0.35,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 41007403 . T A 25 . DP=21;VDB=0.0384;AF1=0.5;AC1=1;DP4=1,12,0,7;MQ=58;FQ=28;PV4=1,6.2e-09,1,0.12 GT:PL:GQ 0/1:55,0,202:58 chr1 41101572 . A G 38 . DP=9;VDB=0.0224;AF1=0.5;AC1=1;DP4=3,3,3,0;MQ=60;FQ=41;PV4=0.46,1,1,1 GT:PL:GQ 0/1:68,0,144:71 chr1 41107360 . T C 225 . DP=89;VDB=0.0399;AF1=0.5;AC1=1;DP4=27,18,27,14;MQ=60;FQ=225;PV4=0.66,0.13,0.15,0.27 GT:PL:GQ 0/1:255,0,255:99 chr1 41224008 . C T 40 . DP=8;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,1,1,5;MQ=60;FQ=26.9;PV4=0.46,9.6e-05,1,0.13 GT:PL:GQ 0/1:70,0,54:57 chr1 41282919 . C T 29 . DP=39;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,6,8,4;MQ=60;FQ=32;PV4=0.71,2.8e-09,1,0.25 GT:PL:GQ 0/1:59,0,255:62 chr1 41282921 . C T 61 . DP=40;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,6,11,5;MQ=60;FQ=64;PV4=0.73,5e-15,1,0.24 GT:PL:GQ 0/1:91,0,255:94 chr1 41284119 . C G 24 . DP=4;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:56,9,0:15 chr1 41284366 . G C 47.5 . DP=4;VDB=0.0263;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:80,12,0:21 chr1 41284406 . A G 22.8 . DP=2;VDB=0.0122;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:54,6,0:10 chr1 41285087 . T C 222 . DP=76;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,39,31;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr1 41285585 . G A 113 . DP=79;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,16;MQ=60;FQ=-84 GT:PL:GQ 1/1:146,57,0:99 chr1 41285591 . A G 128 . DP=71;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,3,20;MQ=58;FQ=-96 GT:PL:GQ 1/1:161,69,0:99 chr1 41288105 . G C 54.3 . DP=9;VDB=0.0345;AF1=0.5336;AC1=1;DP4=0,1,1,7;MQ=57;FQ=-18.1;PV4=1,0.021,0.37,0.22 GT:PL:GQ 0/1:84,0,9:12 chr1 41289993 . T C 115 . DP=37;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,8,10,11;MQ=60;FQ=118;PV4=1,3.2e-15,1,1 GT:PL:GQ 0/1:145,0,250:99 chr1 41298652 . T C 136 . DP=80;VDB=0.0244;AF1=0.5;AC1=1;DP4=32,7,30,9;MQ=60;FQ=139;PV4=0.78,8e-24,0.16,1 GT:PL:GQ 0/1:166,0,255:99 chr1 41453286 . GTT GT 182 . INDEL;DP=30;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,28;MQ=58;FQ=-122 GT:PL:GQ 1/1:223,87,0:99 chr1 41454425 . G A 77 . DP=17;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,5,3,7;MQ=59;FQ=79.9;PV4=1,4.7e-05,0.23,0.017 GT:PL:GQ 0/1:107,0,124:99 chr1 41456821 . T G 35 . DP=48;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,2,10,1;MQ=59;FQ=38;PV4=1,8.1e-09,0.091,0.42 GT:PL:GQ 0/1:65,0,221:68 chr1 41466803 . G A 222 . DP=14;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,8,4;MQ=60;FQ=-63 GT:PL:GQ 1/1:255,36,0:69 chr1 41474400 . C G 149 . DP=68;VDB=0.0322;AF1=0.5;AC1=1;DP4=24,14,16,14;MQ=60;FQ=152;PV4=0.46,1.1e-22,1,1 GT:PL:GQ 0/1:179,0,255:99 chr1 41475085 . A G 202 . DP=52;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,40,8;MQ=60;FQ=-171 GT:PL:GQ 1/1:235,144,0:99 chr1 41485902 . C G 135 . DP=17;VDB=0.0140;AF1=0.5;AC1=1;DP4=6,3,5,3;MQ=59;FQ=138;PV4=1,0.11,0.15,0.49 GT:PL:GQ 0/1:165,0,200:99 chr1 41486245 . C T 225 . DP=62;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,14,12,19;MQ=60;FQ=225;PV4=0.31,0.053,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 41486408 . G A 19.1 . DP=4;VDB=0.0163;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=21.5;PV4=1,0.25,1,1 GT:PL:GQ 0/1:49,0,58:51 chr1 41493749 . G A 73 . DP=14;VDB=0.0011;AF1=0.5;AC1=1;DP4=6,0,6,2;MQ=60;FQ=75.9;PV4=0.47,1.4e-05,1,1 GT:PL:GQ 0/1:103,0,118:99 chr1 41493811 . C T 52 . DP=47;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,7,15,2;MQ=60;FQ=55;PV4=0.45,2.5e-22,1,1 GT:PL:GQ 0/1:82,0,255:85 chr1 41494222 . G T 222 . DP=67;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,47,18;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr1 41540853 . A T 106 . DP=55;VDB=0.0164;AF1=0.5;AC1=1;DP4=23,5,21,5;MQ=60;FQ=109;PV4=1,6.4e-15,1,1 GT:PL:GQ 0/1:136,0,255:99 chr1 41540861 . T C 60 . DP=54;VDB=0.0164;AF1=0.5;AC1=1;DP4=21,6,21,5;MQ=60;FQ=63;PV4=1,1.2e-18,1,1 GT:PL:GQ 0/1:90,0,255:93 chr1 41618442 . A T 73 . DP=22;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,11,3,6;MQ=59;FQ=76;PV4=0.27,3.7e-07,1,0.4 GT:PL:GQ 0/1:103,0,196:99 chr1 41651938 . G C 29 . DP=11;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=60;FQ=32;PV4=1,4.4e-05,1,0.18 GT:PL:GQ 0/1:59,0,112:62 chr1 41651952 . G A 6.98 . DP=7;VDB=0.0161;AF1=0.4999;AC1=1;DP4=0,3,0,4;MQ=60;FQ=9.53;PV4=1,1.7e-05,1,1 GT:PL:GQ 0/1:36,0,81:37 chr1 41949595 . G A 67 . DP=8;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:100,24,0:45 chr1 41949628 . A C 89 . DP=14;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:122,42,0:81 chr1 41950312 . T C 222 . DP=28;VDB=0.0322;AF1=1;AC1=2;DP4=0,1,9,17;MQ=59;FQ=-79;PV4=1,1,1,0.26 GT:PL:GQ 1/1:255,52,0:99 chr1 41976017 . C T 48 . DP=5;VDB=0.0170;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=25;PV4=1,1,1,0.23 GT:PL:GQ 0/1:78,0,52:55 chr1 41976328 . T C 111 . DP=10;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,5,3;MQ=60;FQ=-51 GT:PL:GQ 1/1:144,24,0:45 chr1 41978566 . T G 148 . DP=15;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,7,7;MQ=60;FQ=-69 GT:PL:GQ 1/1:181,42,0:81 chr1 41978825 . C G 216 . DP=54;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,35,17;MQ=60;FQ=-184 GT:PL:GQ 1/1:249,157,0:99 chr1 41979156 . A G 117 . DP=21;VDB=0.0373;AF1=0.5;AC1=1;DP4=5,4,4,7;MQ=60;FQ=120;PV4=0.65,0.00056,1,1 GT:PL:GQ 0/1:147,0,192:99 chr1 41983912 . C A 104 . DP=24;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,22,0;MQ=60;FQ=-93 GT:PL:GQ 1/1:137,66,0:99 chr1 42046812 . C T 222 . DP=60;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,15,39;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr1 42048745 . T C 222 . DP=83;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,31,44;MQ=59;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr1 42049032 . G A 222 . DP=37;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,4,31;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 42049140 . C G 222 . DP=49;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,34,14;MQ=59;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 42050366 . C T 225 . DP=45;VDB=0.0216;AF1=0.5;AC1=1;DP4=11,10,11,11;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 42629040 . A G 40.3 . DP=6;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:73,15,0:27 chr1 42630364 . G A 119 . DP=21;VDB=0.0244;AF1=0.6672;AC1=1;DP4=1,1,10,9;MQ=60;FQ=-24;PV4=1,3.1e-05,1,0.18 GT:PL:GQ 0/1:148,0,3:6 chr1 42693597 . A G 222 . DP=82;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,30,50;MQ=59;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr1 42880516 . T C 225 . DP=42;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,4,12,8;MQ=60;FQ=225;PV4=0.3,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 43212431 . A G 165 . DP=41;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,21,17;MQ=60;FQ=-141 GT:PL:GQ 1/1:198,114,0:99 chr1 43213103 . A C 222 . DP=46;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,21,20;MQ=60;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 43215930 . C T 222 . DP=104;VDB=0.0365;AF1=1;AC1=2;DP4=1,1,55,45;MQ=60;FQ=-271;PV4=1,0.002,0.44,1 GT:PL:GQ 1/1:255,244,0:99 chr1 43221187 . C T 183 . DP=69;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,42,20;MQ=59;FQ=-187;PV4=1,0.0039,1,0.25 GT:PL:GQ 1/1:216,160,0:99 chr1 43228189 . T A 184 . DP=32;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,5,25;MQ=60;FQ=-117 GT:PL:GQ 1/1:217,90,0:99 chr1 43296354 . G T 128 . DP=17;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,2,14;MQ=60;FQ=-75 GT:PL:GQ 1/1:161,48,0:93 chr1 43300663 . T C 39.3 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:72,15,0:27 chr1 43300921 . C G 222 . DP=22;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,3,18;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 43305753 . G A 225 . DP=108;VDB=0.0392;AF1=0.5;AC1=1;DP4=40,16,37,14;MQ=60;FQ=225;PV4=1,1,1,0.43 GT:PL:GQ 0/1:255,0,255:99 chr1 43392250 . C G 88 . DP=9;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,2;MQ=60;FQ=-54 GT:PL:GQ 1/1:121,27,0:51 chr1 43395635 . C T 194 . DP=31;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,7,24;MQ=60;FQ=-120 GT:PL:GQ 1/1:227,93,0:99 chr1 43396414 . G A 222 . DP=112;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,70,34;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 43408966 . G A 222 . DP=88;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,40,46;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 43424519 . T G 89 . DP=18;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81 GT:PL:GQ 1/1:122,54,0:99 chr1 43610910 . T G 152 . DP=31;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,4,15,6;MQ=60;FQ=154;PV4=0.69,6.7e-11,1,1 GT:PL:GQ 0/1:182,0,188:99 chr1 43611005 . G A 222 . DP=36;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,8,5,11;MQ=60;FQ=223;PV4=0.19,0.23,1,1 GT:PL:GQ 0/1:252,0,255:99 chr1 43613786 . G T 111 . DP=27;VDB=0.0393;AF1=0.5;AC1=1;DP4=1,10,0,13;MQ=59;FQ=114;PV4=0.46,0.17,0.18,0.23 GT:PL:GQ 0/1:141,0,168:99 chr1 43618596 . G A 176 . DP=60;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,12,19,10;MQ=60;FQ=179;PV4=0.79,1.5e-12,1,0.46 GT:PL:GQ 0/1:206,0,255:99 chr1 43632536 . C T 225 . DP=88;VDB=0.0400;AF1=0.5;AC1=1;DP4=24,24,18,19;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 43632815 . T G 114 . DP=147;VDB=0.0392;AF1=0.5;AC1=1;DP4=39,33,41,26;MQ=60;FQ=117;PV4=0.49,3e-54,0.15,1 GT:PL:GQ 0/1:144,0,255:99 chr1 43632816 . T C 121 . DP=148;VDB=0.0392;AF1=0.5;AC1=1;DP4=40,34,40,27;MQ=60;FQ=124;PV4=0.61,3.7e-55,0.15,1 GT:PL:GQ 0/1:151,0,255:99 chr1 43632997 . A G 139 . DP=30;VDB=0.0019;AF1=0.5;AC1=1;DP4=3,14,1,11;MQ=60;FQ=142;PV4=0.62,1,1,0.29 GT:PL:GQ 0/1:169,0,229:99 chr1 43634867 . C T 4.13 . DP=3;VDB=0.0186;AF1=0.5;AC1=1;DP4=0,1,0,2;MQ=60;FQ=4.13;PV4=1,0.015,1,0.33 GT:PL:GQ 0/1:32,0,32:31 chr1 43636484 . C G 172 . DP=59;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,19,15,18;MQ=60;FQ=175;PV4=0.18,2e-15,1,1 GT:PL:GQ 0/1:202,0,255:99 chr1 43637549 . A G 160 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,1,9,2;MQ=60;FQ=148;PV4=1,0.25,1,1 GT:PL:GQ 0/1:190,0,175:99 chr1 43637932 . T C 123 . DP=102;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,35,13,33;MQ=60;FQ=126;PV4=0.66,2.1e-21,1,1 GT:PL:GQ 0/1:153,0,255:99 chr1 43638410 . G C 161 . DP=29;VDB=0.0190;AF1=0.5;AC1=1;DP4=14,2,12,1;MQ=60;FQ=164;PV4=1,1,1,0.47 GT:PL:GQ 0/1:191,0,229:99 chr1 43638457 . T A 27 . DP=52;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,10,18,1;MQ=59;FQ=30;PV4=0.037,2e-18,1,1 GT:PL:GQ 0/1:57,0,255:60 chr1 43642988 . G T 22 . DP=19;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,8,0,10;MQ=60;FQ=25;PV4=1,2.5e-12,1,1 GT:PL:GQ 0/1:52,0,141:55 chr1 43649508 . A G 102 . DP=18;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,4,5,5;MQ=59;FQ=105;PV4=1,3.3e-05,0.19,1 GT:PL:GQ 0/1:132,0,173:99 chr1 43650741 . T C 5.46 . DP=14;VDB=0.0033;AF1=0.4999;AC1=1;DP4=10,0,4,0;MQ=60;FQ=7.8;PV4=1,0.00013,1,1 GT:PL:GQ 0/1:34,0,149:34 chr1 43652369 . T C 170 . DP=83;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,62,17;MQ=58;FQ=-265 GT:PL:GQ 1/1:203,238,0:99 chr1 43663376 . A G 123 . DP=59;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,27;MQ=59;FQ=-141 GT:PL:GQ 1/1:156,114,0:99 chr1 43664119 . A G 42 . DP=25;VDB=0.0099;AF1=0.5;AC1=1;DP4=11,1,12,1;MQ=60;FQ=45;PV4=1,4.2e-15,1,1 GT:PL:GQ 0/1:72,0,198:75 chr1 43664218 . C T 118 . DP=87;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,27,18,19;MQ=60;FQ=121;PV4=0.67,2.9e-39,1,1 GT:PL:GQ 0/1:148,0,255:99 chr1 43675467 . G A 222 . DP=50;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,35,11;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 43680839 . TGGGGGG TGGGGGGG 9.05 . INDEL;DP=13;VDB=0.0008;AF1=0.5003;AC1=1;DP4=5,0,8,0;MQ=60;FQ=-6.66;PV4=1,1,1,0.0024 GT:PL:GQ 0/1:46,0,29:33 chr1 43680855 . G A 157 . DP=16;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,16,0;MQ=60;FQ=-75 GT:PL:GQ 1/1:190,48,0:93 chr1 43681184 . C T 100 . DP=16;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,15;MQ=57;FQ=-75 GT:PL:GQ 1/1:133,48,0:93 chr1 43688743 . G A 24 . DP=17;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,10,0,6;MQ=60;FQ=27;PV4=1,1.3e-09,1,0.44 GT:PL:GQ 0/1:54,0,161:57 chr1 43699813 . A G 34.8 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:66,6,0:10 chr1 43699935 . C T 222 . DP=40;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,28,11;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 43700140 . A G 222 . DP=65;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,39;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 43738822 . G A 218 . DP=45;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,8,10,7;MQ=58;FQ=220;PV4=0.74,0.31,0.18,0.13 GT:PL:GQ 0/1:248,0,255:99 chr1 43771016 . TAAA TAA 178 . INDEL;DP=20;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,2,18;MQ=60;FQ=-94.5 GT:PL:GQ 1/1:219,60,0:99 chr1 43771090 . G A 53.1 . DP=8;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:86,21,0:39 chr1 43773033 . A G 49.3 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:82,15,0:27 chr1 43774495 . G C 69 . DP=9;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:102,27,0:51 chr1 43777852 . C T 142 . DP=29;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,4,24;MQ=60;FQ=-111 GT:PL:GQ 1/1:175,84,0:99 chr1 43779564 . T C 222 . DP=66;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,51,14;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr1 43779869 . T G 139 . DP=6;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,5;MQ=56;FQ=-45 GT:PL:GQ 1/1:172,18,0:33 chr1 43782846 . G A 167 . DP=14;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:200,42,0:81 chr1 43826312 . C A 134 . DP=173;VDB=0.0399;AF1=0.5;AC1=1;DP4=51,43,37,37;MQ=60;FQ=137;PV4=0.64,4.9e-61,0.25,0.46 GT:PL:GQ 0/1:164,0,255:99 chr1 43851797 . G A 225 . DP=107;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,43,12,36;MQ=60;FQ=225;PV4=0.46,0.004,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 43855490 . C T 225 . DP=75;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,28,12,22;MQ=60;FQ=225;PV4=0.8,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 43855578 . G C 160 . DP=42;VDB=0.0373;AF1=0.5;AC1=1;DP4=2,15,6,16;MQ=60;FQ=163;PV4=0.43,2.9e-13,1,0.022 GT:PL:GQ 0/1:190,0,216:99 chr1 43855626 . G C 81 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,9,3,9;MQ=60;FQ=84;PV4=0.23,1.2e-05,1,1 GT:PL:GQ 0/1:111,0,139:99 chr1 43907092 . G A 225 . DP=57;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,12,13,17;MQ=60;FQ=225;PV4=0.59,0.15,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 43916642 . T C 225 . DP=86;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,28,18,24;MQ=60;FQ=225;PV4=0.5,0.45,1,0.25 GT:PL:GQ 0/1:255,0,255:99 chr1 43998397 . GTTTTTTT GTTTTTT 41.5 . INDEL;DP=24;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,16;MQ=60;FQ=-85.5 GT:PL:GQ 1/1:82,51,0:89 chr1 44035352 . C T 222 . DP=45;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,20;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 44044468 . C T 121 . DP=17;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,11,3;MQ=60;FQ=-69 GT:PL:GQ 1/1:154,42,0:81 chr1 44044934 . C T 225 . DP=43;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,14,7,15;MQ=59;FQ=225;PV4=1,1,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr1 44057257 . A G 126 . DP=17;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,1,14;MQ=58;FQ=-72 GT:PL:GQ 1/1:159,45,0:87 chr1 44057668 . G T 155 . DP=43;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,29;MQ=59;FQ=-144 GT:PL:GQ 1/1:188,117,0:99 chr1 44057696 . A G 222 . DP=24;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,3,18;MQ=59;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 44058034 . G A 71 . DP=19;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,19,0;MQ=60;FQ=-84 GT:PL:GQ 1/1:104,57,0:99 chr1 44058265 . C A 154 . DP=35;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,4,27;MQ=59;FQ=-120 GT:PL:GQ 1/1:187,93,0:99 chr1 44064319 . A G 193 . DP=38;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,31,6;MQ=60;FQ=-138 GT:PL:GQ 1/1:226,111,0:99 chr1 44067859 . A G 222 . DP=97;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,31,59;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 44071221 . G A 222 . DP=54;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,16,36;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 44072018 . C T 57 . DP=87;VDB=0.0345;AF1=0.5;AC1=1;DP4=33,20,21,11;MQ=59;FQ=60;PV4=0.82,1e-35,1,0.31 GT:PL:GQ 0/1:87,0,255:90 chr1 44072066 . C T 188 . DP=82;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,37,37;MQ=60;FQ=-250 GT:PL:GQ 1/1:221,223,0:99 chr1 44072420 . A G 193 . DP=24;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,7;MQ=59;FQ=-99 GT:PL:GQ 1/1:226,72,0:99 chr1 44075227 . T C 88 . DP=14;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:121,36,0:69 chr1 44078359 . T A 214 . DP=36;VDB=0.0216;AF1=1;AC1=2;DP4=1,0,32,2;MQ=60;FQ=-93;PV4=1,0.25,1,0.28 GT:PL:GQ 1/1:247,66,0:99 chr1 44078384 . T C 201 . DP=57;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,42,13;MQ=60;FQ=-193 GT:PL:GQ 1/1:234,166,0:99 chr1 44079411 . T C 222 . DP=43;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,35;MQ=60;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 44083110 . C T 166 . DP=31;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,25,4;MQ=59;FQ=-114 GT:PL:GQ 1/1:199,87,0:99 chr1 44083507 . T C 222 . DP=70;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,43;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr1 44083519 . G A 187 . DP=58;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,13,42;MQ=60;FQ=-193 GT:PL:GQ 1/1:220,166,0:99 chr1 44084739 . C T 222 . DP=51;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,24,21;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 44086080 . T C 169 . DP=61;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,39,17;MQ=58;FQ=-196 GT:PL:GQ 1/1:202,169,0:99 chr1 44086831 . C T 222 . DP=57;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,27;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr1 44087496 . C T 195 . DP=45;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,37,7;MQ=59;FQ=-159 GT:PL:GQ 1/1:228,132,0:99 chr1 44125962 . CAAAAA CAAAA 132 . INDEL;DP=33;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,24,9;MQ=60;FQ=-134 GT:PL:GQ 1/1:173,99,0:99 chr1 44137257 . C A 222 . DP=65;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,32,32;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr1 44280381 . A T 110 . DP=24;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,23,1;MQ=60;FQ=-99 GT:PL:GQ 1/1:143,72,0:99 chr1 44280425 . T G 174 . DP=63;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,49,9;MQ=60;FQ=-202 GT:PL:GQ 1/1:207,175,0:99 chr1 44323736 . T C 122 . DP=27;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,21,4;MQ=60;FQ=-102 GT:PL:GQ 1/1:155,75,0:99 chr1 44386445 . G A 225 . DP=47;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,5,21,5;MQ=60;FQ=225;PV4=0.73,0.023,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 44386615 . A G 222 . DP=28;VDB=0.0400;AF1=1;AC1=2;DP4=0,1,4,19;MQ=58;FQ=-70;PV4=1,0.18,1,0.23 GT:PL:GQ 1/1:255,43,0:83 chr1 44395786 . C T 196 . DP=39;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,14,21;MQ=60;FQ=-132 GT:PL:GQ 1/1:229,105,0:99 chr1 44401384 . A G 222 . DP=66;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,27,35;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 44415415 . C T 222 . DP=132;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,65,64;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 44426025 . G A 222 . DP=32;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,17;MQ=59;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 44426948 . G A 220 . DP=103;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,17,79;MQ=59;FQ=-282 GT:PL:GQ 1/1:253,255,0:99 chr1 44432500 . C G 164 . DP=50;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,17,31;MQ=60;FQ=-171 GT:PL:GQ 1/1:197,144,0:99 chr1 44442521 . A C 67 . DP=23;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,19;MQ=59;FQ=-90 GT:PL:GQ 1/1:100,63,0:99 chr1 44451124 . G T 10.4 . DP=9;VDB=0.0030;AF1=0.5;AC1=1;DP4=6,0,3,0;MQ=60;FQ=13.2;PV4=1,0.017,1,1 GT:PL:GQ 0/1:40,0,106:42 chr1 44457215 . G A 33.5 . DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:66,12,0:21 chr1 44457305 . G A 172 . DP=16;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,12,4;MQ=59;FQ=-75 GT:PL:GQ 1/1:205,48,0:93 chr1 44594966 . G A 87 . DP=38;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,34,2;MQ=59;FQ=-135 GT:PL:GQ 1/1:120,108,0:99 chr1 44595113 . G C 222 . DP=123;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,44,76;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 44595410 . A G 222 . DP=85;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,49;MQ=59;FQ=-274 GT:PL:GQ 1/1:255,247,0:99 chr1 44595426 . G A 210 . DP=80;VDB=0.0399;AF1=1;AC1=2;DP4=0,1,33,39;MQ=60;FQ=-207;PV4=1,3.6e-07,0.45,0.22 GT:PL:GQ 1/1:243,180,0:99 chr1 44595995 . GCCCCCC GCCCCCCC 16.8 . INDEL;DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:57,15,0:25 chr1 44788398 . A T 222 . DP=33;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,13;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 44818664 . ATACTAC ATAC 217 . INDEL;DP=48;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,17,7,14;MQ=57;FQ=217;PV4=1,0.0078,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr1 45170012 . A G 32 . DP=5;VDB=0.0033;AF1=0.5013;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-5.45;PV4=1,0.025,1,0.31 GT:PL:GQ 0/1:62,0,23:26 chr1 45206495 . G A 45 . DP=13;VDB=0.0011;AF1=0.5;AC1=1;DP4=5,0,7,0;MQ=58;FQ=48;PV4=1,0.00061,1,1 GT:PL:GQ 0/1:75,0,103:78 chr1 45241113 . T C 6.2 . DP=6;VDB=0.0080;AF1=0.4999;AC1=1;DP4=3,0,3,0;MQ=60;FQ=8.65;PV4=1,0.002,1,0.14 GT:PL:GQ 0/1:35,0,76:36 chr1 45241374 . G A 7.8 . DP=7;VDB=0.0133;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=10.4;PV4=1,0.00013,1,1 GT:PL:GQ 0/1:37,0,96:39 chr1 45250007 . C G 18.1 . DP=9;VDB=0.0199;AF1=0.5;AC1=1;DP4=4,2,2,1;MQ=60;FQ=21;PV4=1,0.00029,1,1 GT:PL:GQ 0/1:48,0,158:51 chr1 45269333 . A G 225 . DP=98;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,35,14,34;MQ=60;FQ=225;PV4=1,0.18,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 45271828 . T C 225 . DP=69;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,22,9,25;MQ=60;FQ=225;PV4=0.6,0.19,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 45285950 . TCC TCCC 61.5 . INDEL;DP=7;VDB=0.0033;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=27.5;PV4=1,1,1,0.39 GT:PL:GQ 0/1:99,0,62:65 chr1 45292866 . G A 193 . DP=39;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,16,9,5;MQ=60;FQ=196;PV4=0.11,0.43,1,0.46 GT:PL:GQ 0/1:223,0,255:99 chr1 45293518 . A G 182 . DP=44;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,6,18,9;MQ=60;FQ=183;PV4=0.74,0.0001,1,1 GT:PL:GQ 0/1:212,0,215:99 chr1 45294156 . T C 124 . DP=36;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,6,7,8;MQ=60;FQ=127;PV4=0.3,3e-10,1,0.31 GT:PL:GQ 0/1:154,0,255:99 chr1 45307506 . G A 225 . DP=65;VDB=0.0400;AF1=0.5;AC1=1;DP4=20,15,15,12;MQ=60;FQ=225;PV4=1,0.25,1,0.19 GT:PL:GQ 0/1:255,0,255:99 chr1 45308409 . G A 128 . DP=58;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,7,27,3;MQ=59;FQ=131;PV4=0.17,1e-11,1,1 GT:PL:GQ 0/1:158,0,255:99 chr1 45340282 . C T 3.01 . DP=20;VDB=0.0190;AF1=0.4997;AC1=1;DP4=12,0,7,0;MQ=60;FQ=4.77;PV4=1,4.7e-10,1,1 GT:PL:GQ 0/1:30,0,170:28 chr1 45362992 . T C 219 . DP=45;VDB=0.0271;AF1=0.5;AC1=1;DP4=23,3,14,4;MQ=60;FQ=221;PV4=0.42,0.27,1,1 GT:PL:GQ 0/1:249,0,255:99 chr1 45469155 . C T 152 . DP=21;VDB=0.0216;AF1=0.5;AC1=1;DP4=7,1,11,1;MQ=60;FQ=126;PV4=1,0.37,1,0.16 GT:PL:GQ 0/1:182,0,153:99 chr1 45469586 . G A 122 . DP=82;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,21,22,15;MQ=59;FQ=125;PV4=0.5,1.4e-31,0.46,0.11 GT:PL:GQ 0/1:152,0,255:99 chr1 45472798 . Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt Ttgtgtgtgtgtgtgtgtgtgtgt 14.4 . INDEL;DP=4;VDB=0.0145;AF1=1;AC1=2;DP4=0,0,0,2;MQ=29;FQ=-40.5 GT:PL:GQ 1/1:53,6,0:10 chr1 45474157 . G A 69 . DP=19;VDB=0.0393;AF1=0.5;AC1=1;DP4=2,5,5,7;MQ=60;FQ=72;PV4=0.66,5.4e-11,1,0.39 GT:PL:GQ 0/1:99,0,155:99 chr1 45475566 . A G 59.1 . DP=7;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:92,21,0:39 chr1 45479499 . G C 146 . DP=102;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,17,37,20;MQ=60;FQ=149;PV4=0.39,5.6e-28,0.21,1 GT:PL:GQ 0/1:176,0,255:99 chr1 45479709 . A G 225 . DP=67;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,12,12,25;MQ=60;FQ=225;PV4=0.046,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 45479874 . G T 134 . DP=9;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,5;MQ=57;FQ=-54 GT:PL:GQ 1/1:167,27,0:51 chr1 45485710 . TGGGGG TGGGG 40.5 . INDEL;DP=22;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,1,6,3;MQ=60;FQ=39.4;PV4=0.27,1,1,0.072 GT:PL:GQ 0/1:78,0,76:77 chr1 45504720 . G C 167 . DP=51;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,10,16,10;MQ=60;FQ=170;PV4=1,9.5e-15,0.17,0.079 GT:PL:GQ 0/1:197,0,255:99 chr1 45504806 . C T 105 . DP=40;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,15,3,18;MQ=60;FQ=108;PV4=0.69,1.4e-17,1,1 GT:PL:GQ 0/1:135,0,255:99 chr1 45524213 . C T 52 . DP=13;VDB=0.0066;AF1=0.5;AC1=1;DP4=5,0,7,0;MQ=60;FQ=55;PV4=1,5e-05,1,1 GT:PL:GQ 0/1:82,0,110:85 chr1 45671966 . A G 73 . DP=35;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,15,2,10;MQ=59;FQ=76;PV4=0.43,3.3e-07,1,1 GT:PL:GQ 0/1:103,0,255:99 chr1 45796269 . G C 222 . DP=57;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,39;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr1 45798555 . T C 222 . DP=133;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,64,63;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 45805566 . G C 197 . DP=53;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,29;MQ=60;FQ=-175 GT:PL:GQ 1/1:230,148,0:99 chr1 45961955 . A G 22.5 . DP=5;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:55,12,0:21 chr1 45965307 . G A 122 . DP=66;VDB=0.0400;AF1=1;AC1=2;DP4=0,1,4,55;MQ=60;FQ=-173;PV4=1,0.00012,0.45,1 GT:PL:GQ 1/1:155,146,0:99 chr1 45965340 . T C 124 . DP=36;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,32;MQ=59;FQ=-129 GT:PL:GQ 1/1:157,102,0:99 chr1 45973928 . G A 222 . DP=53;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,29,19;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 45981512 . T C 194 . DP=83;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,55;MQ=60;FQ=-262 GT:PL:GQ 1/1:227,235,0:99 chr1 46027355 . T C 222 . DP=18;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,14,4;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr1 46050004 . TTCGG T 214 . INDEL;DP=18;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,18;MQ=49;FQ=-88.5 GT:PL:GQ 1/1:255,54,0:99 chr1 46065998 . T C 222 . DP=92;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,54,36;MQ=55;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 46073489 . G A 197 . DP=23;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,13,8;MQ=58;FQ=-90 GT:PL:GQ 1/1:230,63,0:99 chr1 46078630 . A G 31 . DP=4;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:63,9,0:16 chr1 46078854 . A G 217 . DP=33;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,17,15;MQ=60;FQ=-123 GT:PL:GQ 1/1:250,96,0:99 chr1 46078884 . C T 216 . DP=33;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,14,18;MQ=59;FQ=-123 GT:PL:GQ 1/1:249,96,0:99 chr1 46080530 . T C 47.1 . DP=8;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:80,21,0:39 chr1 46080947 . A C 222 . DP=116;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,54,55;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 46081940 . T A 214 . DP=44;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,37,7;MQ=59;FQ=-159 GT:PL:GQ 1/1:247,132,0:99 chr1 46081960 . C T 222 . DP=60;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,44,14;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 46082431 . C A 222 . DP=69;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,13,51;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr1 46085879 . C G 43.5 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:76,12,0:21 chr1 46086077 . C T 222 . DP=56;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,17,35;MQ=59;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 46086913 . C T 27 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:59,9,0:16 chr1 46087577 . G A 222 . DP=101;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,38,59;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 46087879 . A G 192 . DP=79;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,56,19;MQ=60;FQ=-253 GT:PL:GQ 1/1:225,226,0:99 chr1 46089225 . C G 222 . DP=69;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,42,22;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr1 46347910 . G A 177 . DP=21;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,19,0;MQ=60;FQ=-84 GT:PL:GQ 1/1:210,57,0:99 chr1 46379518 . A G 210 . DP=45;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,29;MQ=59;FQ=-156 GT:PL:GQ 1/1:243,129,0:99 chr1 46424964 . G A 107 . DP=28;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,22,4;MQ=60;FQ=-105 GT:PL:GQ 1/1:140,78,0:99 chr1 46466721 . T C 222 . DP=137;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,57,76;MQ=59;FQ=-282;PV4=0.43,0.19,0.44,0.24 GT:PL:GQ 1/1:255,255,0:99 chr1 46476587 . T G 222 . DP=39;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,20;MQ=59;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 46485548 . G T 17.6 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:50,12,0:20 chr1 46485562 . C T 67.5 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:100,12,0:21 chr1 46487552 . G A 222 . DP=60;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,50,7;MQ=59;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr1 46487560 . A G 201 . DP=69;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,51,15;MQ=59;FQ=-226 GT:PL:GQ 1/1:234,199,0:99 chr1 46491635 . C T 8.61 . DP=6;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:40,9,0:12 chr1 46493460 . T G 150 . DP=67;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,45,19;MQ=60;FQ=-193;PV4=1,9.4e-06,1,0.24 GT:PL:GQ 1/1:183,166,0:99 chr1 46495434 . G A 64 . DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:96,9,0:16 chr1 46496709 . A G 222 . DP=32;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,18,13;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 46498375 . A G 222 . DP=39;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,23;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 46511487 . G C 28 . DP=4;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:60,9,0:16 chr1 46521517 . G A 222 . DP=49;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,26,19;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 46521559 . A T 186 . DP=50;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,26;MQ=60;FQ=-171 GT:PL:GQ 1/1:219,144,0:99 chr1 46546208 . T C 171 . DP=14;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:204,42,0:81 chr1 46598269 . C A 74 . DP=20;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:107,39,0:75 chr1 46598273 . A C 152 . DP=20;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,14,5;MQ=60;FQ=-84 GT:PL:GQ 1/1:185,57,0:99 chr1 46655158 . T C 216 . DP=27;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,13,13;MQ=60;FQ=-105 GT:PL:GQ 1/1:249,78,0:99 chr1 46763947 . G C 225 . DP=50;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,6,22,13;MQ=59;FQ=208;PV4=1,0.098,0.18,0.14 GT:PL:GQ 0/1:255,0,235:99 chr1 46806429 . A T 18.1 . DP=9;VDB=0.0141;AF1=0.5;AC1=1;DP4=6,0,2,0;MQ=60;FQ=21;PV4=1,1,1,1 GT:PL:GQ 0/1:48,0,131:51 chr1 46806480 . C T 68 . DP=22;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,2,9,2;MQ=60;FQ=71;PV4=1,4.2e-06,1,0.24 GT:PL:GQ 0/1:98,0,181:99 chr1 46806550 . C T 115 . DP=38;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,8,10,9;MQ=60;FQ=118;PV4=1,1.7e-15,1,0.43 GT:PL:GQ 0/1:145,0,255:99 chr1 46806703 . A G 77 . DP=24;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,11,1,10;MQ=60;FQ=80;PV4=1,0.00027,1,0.28 GT:PL:GQ 0/1:107,0,204:99 chr1 46810405 . TGGGGG TGGGG 34.5 . INDEL;DP=25;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,7,11,1;MQ=59;FQ=37.5;PV4=0.027,4.2e-07,0.16,1 GT:PL:GQ 0/1:72,0,105:75 chr1 46810530 . A G 126 . DP=60;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,14,20,6;MQ=60;FQ=129;PV4=0.16,5.1e-12,1,1 GT:PL:GQ 0/1:156,0,255:99 chr1 46810670 . T C 110 . DP=123;VDB=0.0398;AF1=0.5;AC1=1;DP4=35,31,29,24;MQ=59;FQ=113;PV4=1,5.2e-48,0.22,1 GT:PL:GQ 0/1:140,0,255:99 chr1 46810842 . C T 103 . DP=17;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,10,0,7;MQ=59;FQ=106;PV4=1,0.41,1,1 GT:PL:GQ 0/1:133,0,162:99 chr1 46812444 . A G 50 . DP=7;VDB=0.0001;AF1=0.5032;AC1=1;DP4=1,0,6,0;MQ=60;FQ=-8.63;PV4=1,0.0015,1,0.0064 GT:PL:GQ 0/1:80,0,19:22 chr1 46812519 . A G 112 . DP=21;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,2,14,2;MQ=60;FQ=80;PV4=0.23,8.9e-08,1,1 GT:PL:GQ 0/1:142,0,107:99 chr1 46818452 . A G 7.8 . DP=8;VDB=0.0169;AF1=0.5;AC1=1;DP4=6,0,2,0;MQ=60;FQ=10.4;PV4=1,0.12,1,0.45 GT:PL:GQ 0/1:37,0,128:39 chr1 46818479 . C T 35 . DP=11;VDB=0.0183;AF1=0.5;AC1=1;DP4=8,0,3,0;MQ=60;FQ=38;PV4=1,0.38,1,1 GT:PL:GQ 0/1:65,0,151:68 chr1 46818508 . T C 39 . DP=24;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,2,5,2;MQ=59;FQ=42;PV4=0.56,7.3e-05,0.067,0.36 GT:PL:GQ 0/1:69,0,221:72 chr1 46826587 . C A 6.98 . DP=3;VDB=0.0180;AF1=0.5002;AC1=1;DP4=0,1,0,2;MQ=60;FQ=4.15;PV4=1,0.11,1,1 GT:PL:GQ 0/1:36,0,30:33 chr1 46827214 . A C 88 . DP=8;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:121,24,0:45 chr1 46827485 . C T 119 . DP=53;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,21,10,13;MQ=60;FQ=122;PV4=0.26,9e-13,1,1 GT:PL:GQ 0/1:149,0,255:99 chr1 46860237 . G A 12.3 . DP=15;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,5,2,4;MQ=60;FQ=15.1;PV4=1,1.4e-07,1,1 GT:PL:GQ 0/1:42,0,206:44 chr1 46871986 . T C 222 . DP=62;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,34,22;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 46877180 . G A 146 . DP=61;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,8,19,11;MQ=60;FQ=149;PV4=0.58,9.5e-16,1,1 GT:PL:GQ 0/1:176,0,255:99 chr1 46976837 . C T 165 . DP=84;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,30,46;MQ=60;FQ=-231;PV4=0.4,0.0063,1,0.27 GT:PL:GQ 1/1:198,204,0:99 chr1 47013180 . A G 222 . DP=63;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,31,25;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 47013364 . T C 222 . DP=22;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,5,16;MQ=57;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 47014821 . aaaaagaaaa aAAAAGaaaagaaaa 214 . INDEL;DP=31;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,5;MQ=52;FQ=-79.5 GT:PL:GQ 1/1:255,45,0:87 chr1 47059934 . T C 222 . DP=96;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,35,54;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 47099346 . C A 97 . DP=15;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,13,1;MQ=58;FQ=-69 GT:PL:GQ 1/1:130,42,0:81 chr1 47108828 . T C 143 . DP=6;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,5,1;MQ=60;FQ=-45 GT:PL:GQ 1/1:176,18,0:33 chr1 47109089 . A G 77 . DP=16;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,7,2,7;MQ=60;FQ=80;PV4=0.47,0.00013,1,0.24 GT:PL:GQ 0/1:107,0,129:99 chr1 47110668 . G C 6.2 . DP=5;VDB=0.0008;AF1=0.5005;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-3.82;PV4=1,0.0024,1,0.24 GT:PL:GQ 0/1:35,0,26:30 chr1 47110712 . C T 120 . DP=11;VDB=0.0271;AF1=0.5002;AC1=1;DP4=2,0,9,0;MQ=60;FQ=5.47;PV4=1,1,1,1 GT:PL:GQ 0/1:150,0,31:34 chr1 47110766 . GC GCC 214 . INDEL;DP=20;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,14,6;MQ=60;FQ=-94.5 GT:PL:GQ 1/1:255,60,0:99 chr1 47118096 . C A 28 . DP=23;VDB=0.0011;AF1=0.5;AC1=1;DP4=14,0,7,0;MQ=60;FQ=31;PV4=1,0.0041,1,0.19 GT:PL:GQ 0/1:58,0,161:61 chr1 47118168 . C T 225 . DP=87;VDB=0.0399;AF1=0.5;AC1=1;DP4=34,17,29,7;MQ=59;FQ=225;PV4=0.22,0.41,0.4,0.21 GT:PL:GQ 0/1:255,0,255:99 chr1 47118189 . G T 79 . DP=108;VDB=0.0365;AF1=0.5;AC1=1;DP4=40,23,30,13;MQ=60;FQ=82;PV4=0.54,2.1e-48,0.11,1 GT:PL:GQ 0/1:109,0,255:99 chr1 47124204 . CAAA CAAAA 47.5 . INDEL;DP=6;VDB=0.0001;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=6.56;PV4=1,1,1,1 GT:PL:GQ 0/1:85,0,40:43 chr1 47124479 . A G 62 . DP=37;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,17,2,16;MQ=59;FQ=65;PV4=1,1.7e-21,0.16,0.2 GT:PL:GQ 0/1:92,0,213:95 chr1 47130873 . A G 94 . DP=17;VDB=0.0140;AF1=0.5;AC1=1;DP4=6,1,8,2;MQ=59;FQ=96.9;PV4=1,3.5e-06,0.21,0.47 GT:PL:GQ 0/1:124,0,139:99 chr1 47138444 . C T 80.3 . DP=6;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:113,15,0:27 chr1 47138819 . T G 149 . DP=138;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,42,34,38;MQ=60;FQ=152;PV4=0.11,7.8e-52,1,0.15 GT:PL:GQ 0/1:179,0,255:99 chr1 47139103 . C T 157 . DP=89;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,26,10,32;MQ=60;FQ=160;PV4=0.16,2.1e-20,1,1 GT:PL:GQ 0/1:187,0,255:99 chr1 47155462 . G A 126 . DP=13;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,3,0,10;MQ=60;FQ=32;PV4=1,0.38,1,1 GT:PL:GQ 0/1:156,0,59:62 chr1 47182206 . C T 30 . DP=14;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,7,0,7;MQ=57;FQ=33;PV4=1,4.2e-08,1,0.086 GT:PL:GQ 0/1:60,0,129:63 chr1 47276728 . G C 159 . DP=53;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,17,11,14;MQ=60;FQ=162;PV4=0.78,4.5e-18,1,1 GT:PL:GQ 0/1:189,0,255:99 chr1 47395973 . G A 192 . DP=50;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,7,40;MQ=59;FQ=-168 GT:PL:GQ 1/1:225,141,0:99 chr1 47398743 . G C 222 . DP=86;VDB=0.0365;AF1=1;AC1=2;DP4=0,1,42,40;MQ=60;FQ=-256;PV4=0.49,1,0.46,0.24 GT:PL:GQ 1/1:255,229,0:99 chr1 47400059 . A G 171 . DP=58;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,45,11;MQ=29;FQ=-196 GT:PL:GQ 1/1:204,169,0:99 chr1 47401424 . A T 31 . DP=3;VDB=0.0183;AF1=1;AC1=2;DP4=0,0,0,3;MQ=32;FQ=-36 GT:PL:GQ 1/1:63,9,0:16 chr1 47402487 . ttgtgtgtgtgtgtgtgtgtgtgtgtgtgt ttgtgtgtgtgtgtgtgtgtgtgtgt 168 . INDEL;DP=37;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,11,10;MQ=57;FQ=-85.5 GT:PL:GQ 1/1:255,97,46:99 chr1 47495822 . C T 161 . DP=59;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,23,8,26;MQ=60;FQ=164;PV4=0.17,2e-27,1,0.42 GT:PL:GQ 0/1:191,0,235:99 chr1 47496983 . C A 123 . DP=36;VDB=0.0081;AF1=0.5;AC1=1;DP4=12,3,13,7;MQ=60;FQ=126;PV4=0.46,2e-13,1,0.18 GT:PL:GQ 0/1:153,0,228:99 chr1 47515596 . A C 94 . DP=14;VDB=0.0164;AF1=0.5;AC1=1;DP4=8,0,6,0;MQ=60;FQ=97;PV4=1,1,1,1 GT:PL:GQ 0/1:124,0,145:99 chr1 47571902 . C T 154 . DP=68;VDB=0.0322;AF1=0.5;AC1=1;DP4=21,15,18,12;MQ=53;FQ=157;PV4=1,2.3e-11,2.9e-06,1 GT:PL:GQ 0/1:184,0,255:99 chr1 47571905 . C T 74 . DP=70;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,18,17,12;MQ=53;FQ=77;PV4=0.81,3e-29,2.3e-06,1 GT:PL:GQ 0/1:104,0,255:99 chr1 47571943 . CTTTTTTTTTTTTTTTT CTTTTTTTTTTTTT,CTTTTTTTTTTTT,CTTTTTTTTTTTTTTT 84.5 . INDEL;DP=63;VDB=0.0400;AF1=1;AC1=2;DP4=0,5,12,17;MQ=54;FQ=-58.5;PV4=0.14,1,0.086,0.34 GT:PL:GQ 1/1:128,27,3,99,0,93,135,18,102,127:45 chr1 47571996 . T C 156 . DP=32;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,15,1,14;MQ=56;FQ=144;PV4=1,0.066,0.003,1 GT:PL:GQ 0/1:186,0,171:99 chr1 47572046 . C T 22 . DP=5;VDB=0.0177;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=51;FQ=23.6;PV4=1,0.014,0.12,1 GT:PL:GQ 0/1:52,0,56:54 chr1 47582195 . G A 14.2 . DP=3;VDB=0.0163;AF1=0.5004;AC1=1;DP4=1,0,2,0;MQ=42;FQ=3.49;PV4=1,0.42,0,1 GT:PL:GQ 0/1:44,0,28:31 chr1 47582242 . Atttcgtttt Attt 9.04 . INDEL;DP=10;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,3,3,0;MQ=53;FQ=11.8;PV4=0.47,0.00011,0,1 GT:PL:GQ 0/1:46,0,255:48 chr1 47582292 . T G 63 . DP=26;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,8,5,3;MQ=54;FQ=66;PV4=1,7.8e-10,6.3e-06,0.088 GT:PL:GQ 0/1:93,0,255:96 chr1 47583415 . G T 6.2 . DP=10;VDB=0.0008;AF1=0.4999;AC1=1;DP4=4,0,6,0;MQ=60;FQ=8.65;PV4=1,4.5e-08,1,1 GT:PL:GQ 0/1:35,0,95:36 chr1 47607851 . A T 140 . DP=74;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,26,5,30;MQ=58;FQ=143;PV4=0.25,9.7e-23,1,0.093 GT:PL:GQ 0/1:170,0,255:99 chr1 47609091 . G A 43 . DP=16;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,6,1,7;MQ=30;FQ=45.7;PV4=1,9.7e-06,1,1 GT:PL:GQ 0/1:73,0,85:76 chr1 47609489 . T C 188 . DP=109;VDB=0.0365;AF1=0.5;AC1=1;DP4=36,17,34,21;MQ=59;FQ=191;PV4=0.55,2.1e-32,0.36,1 GT:PL:GQ 0/1:218,0,255:99 chr1 47609668 . T C 100 . DP=72;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,31,8,24;MQ=59;FQ=103;PV4=0.78,3.6e-27,1,0.46 GT:PL:GQ 0/1:130,0,255:99 chr1 47609944 . C A 5.46 . DP=6;VDB=0.0000;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=28;FQ=5.46;PV4=1,0.0026,1,0.23 GT:PL:GQ 0/1:34,0,34:33 chr1 47610293 . C T 166 . DP=127;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,66,11,31;MQ=31;FQ=169;PV4=0.65,0.0086,1,1 GT:PL:GQ 0/1:196,0,255:99 chr1 47614485 . A G 225 . DP=50;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,19,7,15;MQ=53;FQ=225;PV4=1,1,5e-05,0.13 GT:PL:GQ 0/1:255,0,255:99 chr1 47685455 . T C 151 . DP=35;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,3,28;MQ=60;FQ=-120 GT:PL:GQ 1/1:184,93,0:99 chr1 47689684 . A G 179 . DP=64;VDB=0.0393;AF1=0.5;AC1=1;DP4=15,15,15,14;MQ=60;FQ=182;PV4=1,2.6e-16,1,0.098 GT:PL:GQ 0/1:209,0,255:99 chr1 47689842 . C G 37.5 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:70,12,0:21 chr1 47691568 . GCAGACAGACAGACA GCAGACAGACA 214 . INDEL;DP=18;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,10;MQ=55;FQ=-79.5 GT:PL:GQ 1/1:255,45,0:87 chr1 47717189 . A G 222 . DP=154;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,68,82;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 47735280 . T C 178 . DP=20;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,20,0;MQ=59;FQ=-87 GT:PL:GQ 1/1:211,60,0:99 chr1 47753405 . G A 54 . DP=11;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:87,33,0:63 chr1 47770786 . T A 59 . DP=12;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:92,30,0:57 chr1 47841038 . GAAAAAAA GAAAAAAAA 17.5 . INDEL;DP=20;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,17;MQ=60;FQ=-85.5 GT:PL:GQ 1/1:58,51,0:65 chr1 47842431 . G A 118 . DP=20;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,8,11;MQ=59;FQ=-84 GT:PL:GQ 1/1:151,57,0:99 chr1 47882574 . G C 6.02 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr1 47904909 . G C 131 . DP=12;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,8,4;MQ=60;FQ=-63 GT:PL:GQ 1/1:164,36,0:69 chr1 47905298 . G A 9.52 . DP=10;VDB=0.0114;AF1=0.5;AC1=1;DP4=4,4,1,1;MQ=60;FQ=12.3;PV4=1,0.47,1,1 GT:PL:GQ 0/1:39,0,187:41 chr1 48459907 . C T 218 . DP=113;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,55,52;MQ=60;FQ=-282 GT:PL:GQ 1/1:251,255,0:99 chr1 48695081 . G A 121 . DP=40;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,13,8,8;MQ=60;FQ=124;PV4=1,2.7e-07,1,1 GT:PL:GQ 0/1:151,0,255:99 chr1 48697733 . T G 222 . DP=77;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,25,50;MQ=59;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr1 48701567 . C T 39 . DP=29;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,11,0,15;MQ=60;FQ=42;PV4=0.21,1.3e-11,1,1 GT:PL:GQ 0/1:69,0,207:72 chr1 48707838 . A G 219 . DP=19;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,1,18;MQ=60;FQ=-84 GT:PL:GQ 1/1:252,57,0:99 chr1 48764419 . C T 225 . DP=62;VDB=0.0298;AF1=0.5;AC1=1;DP4=23,6,17,16;MQ=59;FQ=225;PV4=0.033,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 48902552 . G A 145 . DP=26;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,3,8,11;MQ=40;FQ=105;PV4=0.67,4.3e-08,1.1e-05,0.094 GT:PL:GQ 0/1:175,0,132:99 chr1 48902977 . G C 127 . DP=20;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,18;MQ=38;FQ=-87 GT:PL:GQ 1/1:160,60,0:99 chr1 48937691 . A T 55 . DP=14;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,5,1,3;MQ=60;FQ=58;PV4=1,1,1,0.39 GT:PL:GQ 0/1:85,0,175:88 chr1 49201984 . G A 225 . DP=76;VDB=0.0322;AF1=0.5;AC1=1;DP4=23,11,23,17;MQ=59;FQ=225;PV4=0.47,0.072,0.096,1 GT:PL:GQ 0/1:255,0,255:99 chr1 49224584 . G T 225 . DP=56;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,10,18,11;MQ=60;FQ=225;PV4=1,1,1,0.063 GT:PL:GQ 0/1:255,0,255:99 chr1 49284020 . C A 90 . DP=28;VDB=0.0053;AF1=0.5;AC1=1;DP4=2,11,1,14;MQ=59;FQ=93;PV4=0.58,2.9e-12,0.18,0.077 GT:PL:GQ 0/1:120,0,217:99 chr1 49332724 . A C 142 . DP=58;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,5,24,6;MQ=60;FQ=145;PV4=1,7.5e-21,0.17,1 GT:PL:GQ 0/1:172,0,255:99 chr1 49332969 . A G 59 . DP=17;VDB=0.0099;AF1=0.5;AC1=1;DP4=2,5,2,7;MQ=59;FQ=62;PV4=1,1.6e-06,0.2,1 GT:PL:GQ 0/1:89,0,160:92 chr1 50331725 . T C 77 . DP=10;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:110,30,0:57 chr1 50661411 . C T 191 . DP=94;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,39,48;MQ=59;FQ=-282 GT:PL:GQ 1/1:224,255,0:99 chr1 50666515 . C T 123 . DP=53;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,21,11;MQ=59;FQ=-123 GT:PL:GQ 1/1:156,96,0:99 chr1 50956163 . aaaggaaggaaggaaggaaggaaggaagg aaaggaaggaaggaaggaaggaagg 107 . INDEL;DP=45;VDB=0.0042;AF1=0.5;AC1=1;DP4=16,0,9,0;MQ=39;FQ=110;PV4=1,0.00038,0.44,1 GT:PL:GQ 0/1:145,0,213:99 chr1 50956218 . CA CAGTGGAAATAGA 217 . INDEL;DP=135;VDB=0.0398;AF1=0.5;AC1=1;DP4=26,9,58,14;MQ=35;FQ=134;PV4=0.46,1,0.11,1 GT:PL:GQ 0/1:255,0,169:99 chr1 50957509 . A T 89 . DP=23;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,9,2,11;MQ=60;FQ=91.2;PV4=0.49,9.4e-07,1,0.24 GT:PL:GQ 0/1:119,0,126:99 chr1 51061814 . C G 85 . DP=21;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,5,4,2;MQ=60;FQ=88;PV4=1,0.44,1,1 GT:PL:GQ 0/1:115,0,247:99 chr1 51121198 . T C 140 . DP=80;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,22,13,31;MQ=60;FQ=143;PV4=0.63,4.5e-30,1,1 GT:PL:GQ 0/1:170,0,255:99 chr1 51702565 . T C 137 . DP=19;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,7,4,4;MQ=60;FQ=137;PV4=0.33,0.49,1,1 GT:PL:GQ 0/1:167,0,168:99 chr1 51753812 . G A 43 . DP=26;VDB=0.0190;AF1=0.5;AC1=1;DP4=14,2,9,0;MQ=60;FQ=46;PV4=0.52,4.7e-09,1,0.33 GT:PL:GQ 0/1:73,0,229:76 chr1 51810525 . G A 90 . DP=28;VDB=0.0118;AF1=0.5;AC1=1;DP4=11,4,8,3;MQ=60;FQ=93;PV4=1,0.00019,1,1 GT:PL:GQ 0/1:120,0,228:99 chr1 51826742 . G C 24 . DP=21;VDB=0.0008;AF1=0.5;AC1=1;DP4=13,0,7,0;MQ=60;FQ=27;PV4=1,1.6e-05,1,0.43 GT:PL:GQ 0/1:54,0,172:57 chr1 51826921 . T C 225 . DP=85;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,33,8,29;MQ=60;FQ=225;PV4=0.61,1,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 51873951 . G A 222 . DP=61;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,15,45;MQ=60;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr1 51912760 . T G 154 . DP=71;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,26,8,25;MQ=60;FQ=157;PV4=1,2.2e-18,1,1 GT:PL:GQ 0/1:184,0,255:99 chr1 51924226 . C T 21 . DP=9;VDB=0.0333;AF1=0.5;AC1=1;DP4=2,3,0,2;MQ=60;FQ=24;PV4=1,1,1,1 GT:PL:GQ 0/1:51,0,133:54 chr1 51929504 . TAA TA 119 . INDEL;DP=15;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,6,1,8;MQ=60;FQ=84.5;PV4=1,0.038,1,1 GT:PL:GQ 0/1:157,0,119:99 chr1 52266242 . G A 177 . DP=68;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,32,35;MQ=60;FQ=-229 GT:PL:GQ 1/1:210,202,0:99 chr1 52279650 . T G 222 . DP=55;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,33,19;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 52289220 . TGTATTAAGGTCAAG TG 32.4 . INDEL;DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,3,0;MQ=29;FQ=-43.5 GT:PL:GQ 1/1:72,9,0:16 chr1 52290984 . T G 131 . DP=11;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,4,6;MQ=58;FQ=-57 GT:PL:GQ 1/1:164,30,0:57 chr1 52293570 . G A 222 . DP=67;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,7,58;MQ=59;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr1 52293638 . G A 61.1 . DP=7;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:94,21,0:39 chr1 52306063 . atcttcttcttcttc atcttcttcttc 214 . INDEL;DP=45;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,19,19;MQ=59;FQ=-149 GT:PL:GQ 1/1:255,114,0:99 chr1 52402856 . T G 60.1 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:93,18,0:33 chr1 52402956 . G A 200 . DP=70;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,49,16;MQ=59;FQ=-223 GT:PL:GQ 1/1:233,196,0:99 chr1 52489322 . G A 189 . DP=68;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,16,46;MQ=59;FQ=-214 GT:PL:GQ 1/1:222,187,0:99 chr1 52490418 . C T 24.1 . DP=11;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:57,21,0:37 chr1 52517412 . A G 172 . DP=86;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,62,18;MQ=59;FQ=-268 GT:PL:GQ 1/1:205,241,0:99 chr1 52530736 . CTGTG CTG 131 . INDEL;DP=14;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,6,0,6;MQ=60;FQ=134;PV4=1,0.058,1,0.38 GT:PL:GQ 0/1:169,0,255:99 chr1 52729425 . TCCCCCCCCCCCCCCC TCCCCCCCCCCCCCC,TCCCCCCCCCCCCC 16.6 . INDEL;DP=43;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,15;MQ=60;FQ=-119 GT:PL:GQ 1/1:57,84,0,59,72,56:89 chr1 52820226 . G A 222 . DP=120;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,53,67;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 52838992 . A G 213 . DP=40;VDB=0.0393;AF1=0.5;AC1=1;DP4=8,15,7,8;MQ=60;FQ=216;PV4=0.51,0.3,1,1 GT:PL:GQ 0/1:243,0,255:99 chr1 53068093 . G T 127 . DP=23;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,3,9,2;MQ=59;FQ=130;PV4=1,0.24,0.15,0.35 GT:PL:GQ 0/1:157,0,207:99 chr1 53072454 . T C 218 . DP=96;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,56,38;MQ=60;FQ=-282 GT:PL:GQ 1/1:251,255,0:99 chr1 53073838 . G T 94 . DP=14;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,1,6,3;MQ=60;FQ=88.4;PV4=1,1.2e-07,1,1 GT:PL:GQ 0/1:124,0,116:99 chr1 53153432 . T C 128 . DP=51;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,6,19,8;MQ=59;FQ=131;PV4=1,3.8e-24,1,0.46 GT:PL:GQ 0/1:158,0,255:99 chr1 53222309 . CAGAG CAG 217 . INDEL;DP=48;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,13,4,26;MQ=60;FQ=217;PV4=0.68,0.00056,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 53262151 . C T 144 . DP=47;VDB=0.0216;AF1=0.5;AC1=1;DP4=10,14,0,19;MQ=60;FQ=147;PV4=0.0011,1,1,1 GT:PL:GQ 0/1:174,0,255:99 chr1 53308665 . C G 89.1 . DP=28;VDB=0.0400;AF1=1;AC1=2;DP4=1,1,4,20;MQ=59;FQ=-47;PV4=0.35,6.3e-05,0.39,1 GT:PL:GQ 1/1:122,20,0:37 chr1 53320274 . G T 222 . DP=49;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,24;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 53323492 . C A 134 . DP=20;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,2,18;MQ=60;FQ=-87 GT:PL:GQ 1/1:167,60,0:99 chr1 53333116 . A G 152 . DP=11;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:185,33,0:63 chr1 53364976 . A G 167 . DP=45;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,34;MQ=60;FQ=-150 GT:PL:GQ 1/1:200,123,0:99 chr1 53537097 . T G 71 . DP=41;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,1,17,2;MQ=59;FQ=74;PV4=1,1e-09,0.16,1 GT:PL:GQ 0/1:101,0,168:99 chr1 53537266 . G A 225 . DP=138;VDB=0.0244;AF1=0.5;AC1=1;DP4=34,50,21,29;MQ=60;FQ=225;PV4=1,1,0.36,1 GT:PL:GQ 0/1:255,0,255:99 chr1 53543112 . C G 46 . DP=11;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:79,33,0:63 chr1 53544439 . G A 222 . DP=131;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,44,78;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 53544597 . T C 222 . DP=15;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,8;MQ=60;FQ=-63 GT:PL:GQ 1/1:255,36,0:69 chr1 53553702 . A G 222 . DP=15;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,9,5;MQ=60;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr1 53553754 . T C 148 . DP=23;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,6;MQ=60;FQ=-93 GT:PL:GQ 1/1:181,66,0:99 chr1 53555783 . A C 126 . DP=22;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,1,19;MQ=60;FQ=-87 GT:PL:GQ 1/1:159,60,0:99 chr1 53558270 . A G 222 . DP=59;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,44,12;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 53559310 . T C 23.5 . DP=4;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:56,12,0:21 chr1 53571288 . C G 23 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:55,9,0:15 chr1 53684525 . C G 97 . DP=60;VDB=0.0190;AF1=0.5;AC1=1;DP4=22,9,21,8;MQ=60;FQ=100;PV4=1,3.1e-22,0.15,1 GT:PL:GQ 0/1:127,0,255:99 chr1 53755117 . G A 132 . DP=26;VDB=0.0140;AF1=0.5;AC1=1;DP4=10,3,12,0;MQ=59;FQ=135;PV4=0.22,1,1,1 GT:PL:GQ 0/1:162,0,223:99 chr1 53930360 . G A 81 . DP=21;VDB=0.0384;AF1=0.5;AC1=1;DP4=11,2,6,1;MQ=60;FQ=84;PV4=1,0.24,1,1 GT:PL:GQ 0/1:111,0,195:99 chr1 53974987 . G T 147 . DP=17;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,4,13;MQ=60;FQ=-78 GT:PL:GQ 1/1:180,51,0:99 chr1 53990321 . C T 151 . DP=8;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:184,24,0:45 chr1 54331763 . A G 34 . DP=3;VDB=0.0171;AF1=0.5002;AC1=1;DP4=1,0,2,0;MQ=60;FQ=6.2;PV4=1,0.17,1,0.31 GT:PL:GQ 0/1:64,0,32:35 chr1 54344282 . C A 39 . DP=51;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,4,19,1;MQ=59;FQ=42;PV4=0.64,9.2e-31,0.04,1 GT:PL:GQ 0/1:69,0,255:72 chr1 54356113 . C T 225 . DP=81;VDB=0.0400;AF1=0.5;AC1=1;DP4=32,15,24,10;MQ=60;FQ=225;PV4=1,0.0087,1,0.29 GT:PL:GQ 0/1:255,0,255:99 chr1 54370264 . A T 36 . DP=19;VDB=0.0019;AF1=0.5;AC1=1;DP4=10,0,9,0;MQ=60;FQ=39;PV4=1,2.1e-11,1,0.0069 GT:PL:GQ 0/1:66,0,160:69 chr1 54370306 . G A 119 . DP=42;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,1,18,5;MQ=60;FQ=122;PV4=0.2,3.5e-21,1,0.4 GT:PL:GQ 0/1:149,0,207:99 chr1 54375570 . C A 121 . DP=111;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,23,26,33;MQ=60;FQ=124;PV4=0.56,1.5e-53,1,1 GT:PL:GQ 0/1:151,0,255:99 chr1 54483694 . C T 91 . DP=14;VDB=0.0042;AF1=0.5;AC1=1;DP4=2,0,9,2;MQ=60;FQ=10.4;PV4=1,2.5e-05,1,0.13 GT:PL:GQ 0/1:121,0,37:40 chr1 54514223 . T C 13 . DP=2;VDB=0.0182;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr1 54518725 . G A 225 . DP=51;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,10,18,9;MQ=59;FQ=225;PV4=0.38,0.35,1,0.47 GT:PL:GQ 0/1:255,0,255:99 chr1 54561916 . C T 225 . DP=52;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,5,22,10;MQ=60;FQ=225;PV4=0.76,0.12,1,0.47 GT:PL:GQ 0/1:255,0,255:99 chr1 54605318 . TGGGGGGGG TGGGGGGGGG 62.5 . INDEL;DP=57;VDB=0.0399;AF1=1;AC1=2;DP4=0,1,14,12;MQ=59;FQ=-101;PV4=0.48,1,1,0.25 GT:PL:GQ 1/1:103,66,0:99 chr1 54606804 . C T 219 . DP=40;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,26,14;MQ=60;FQ=-147 GT:PL:GQ 1/1:252,120,0:99 chr1 54607051 . A G 216 . DP=94;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,32,57;MQ=60;FQ=-282 GT:PL:GQ 1/1:249,255,0:99 chr1 54607157 . G A 222 . DP=36;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,11,24;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 54618435 . A T 169 . DP=94;VDB=0.0345;AF1=0.5;AC1=1;DP4=31,17,30,14;MQ=59;FQ=172;PV4=0.83,1.3e-25,0.069,1 GT:PL:GQ 0/1:199,0,255:99 chr1 54636977 . T C 225 . DP=74;VDB=0.0400;AF1=0.5;AC1=1;DP4=21,17,19,15;MQ=59;FQ=225;PV4=1,0.14,0.47,0.056 GT:PL:GQ 0/1:255,0,255:99 chr1 54637167 . T C 57.2 . DP=7;VDB=0.0003;AF1=0.5263;AC1=1;DP4=0,1,0,6;MQ=60;FQ=-17.1;PV4=1,0.11,1,1 GT:PL:GQ 0/1:87,0,10:13 chr1 54681920 . G C 222 . DP=35;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,17,16;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 54686374 . T C 205 . DP=84;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,37,39;MQ=59;FQ=-256 GT:PL:GQ 1/1:238,229,0:99 chr1 54686464 . C T 225 . DP=63;VDB=0.0384;AF1=0.5;AC1=1;DP4=14,16,13,18;MQ=59;FQ=225;PV4=0.8,0.002,1,0.4 GT:PL:GQ 0/1:255,0,255:99 chr1 54690867 . G A 143 . DP=69;VDB=0.0322;AF1=0.5;AC1=1;DP4=25,12,23,7;MQ=59;FQ=146;PV4=0.59,8.3e-15,1,1 GT:PL:GQ 0/1:173,0,255:99 chr1 54690954 . T C 130 . DP=85;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,24,20,19;MQ=59;FQ=133;PV4=0.66,1.4e-31,0.47,1 GT:PL:GQ 0/1:160,0,255:99 chr1 54692854 . AGGGGGGGGGG AGGGGGGGGGGGG 3.8 . INDEL;DP=18;VDB=0.0373;AF1=0.5;AC1=1;DP4=2,1,1,2;MQ=60;FQ=3.8;PV4=1,0.46,1,0.19 GT:PL:GQ 0/1:39,0,39:37 chr1 54706733 . A G 212 . DP=67;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,14,53;MQ=60;FQ=-229 GT:PL:GQ 1/1:245,202,0:99 chr1 55014099 . C T 197 . DP=10;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,8,2;MQ=58;FQ=-57 GT:PL:GQ 1/1:230,30,0:57 chr1 55014160 . C T 96.1 . DP=6;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,2,4;MQ=60;FQ=-45 GT:PL:GQ 1/1:129,18,0:33 chr1 55058160 . G T 134 . DP=54;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,10,18,5;MQ=60;FQ=137;PV4=0.54,1.7e-12,1,0.23 GT:PL:GQ 0/1:164,0,255:99 chr1 55066813 . c cAT 157 . INDEL;DP=5;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:197,15,0:27 chr1 55069986 . T C 222 . DP=16;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,13,3;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 55072726 . T C 69.5 . DP=4;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,4,0;MQ=54;FQ=-39 GT:PL:GQ 1/1:102,12,0:21 chr1 55074840 . T A 222 . DP=27;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,23;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 55075452 . G A 222 . DP=37;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,19,17;MQ=60;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 55078046 . T C 11.1 . DP=2;VDB=0.0161;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr1 55080612 . GGTGTGTGTGTGTGTG GGTGTGTGTGTG 215 . INDEL;DP=28;VDB=0.0345;AF1=1;AC1=2;DP4=0,1,2,10;MQ=58;FQ=-48.5;PV4=1,1,0.39,0.42 GT:PL:GQ 1/1:255,14,0:25 chr1 55080635 . G A 26 . DP=13;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,7,0,3;MQ=58;FQ=29;PV4=1,0.012,0.066,0.34 GT:PL:GQ 0/1:56,0,143:59 chr1 55085648 . C T 60 . DP=25;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,8,5,3;MQ=59;FQ=63;PV4=0.68,5.9e-05,1,1 GT:PL:GQ 0/1:90,0,255:93 chr1 55085684 . GAA GA 149 . INDEL;DP=28;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,8,8,3;MQ=60;FQ=152;PV4=0.25,0.33,1,0.3 GT:PL:GQ 0/1:187,0,255:99 chr1 55118566 . C G 175 . DP=54;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,27,24;MQ=59;FQ=-181 GT:PL:GQ 1/1:208,154,0:99 chr1 55119289 . G C 225 . DP=129;VDB=0.0398;AF1=0.5;AC1=1;DP4=36,36,32,23;MQ=60;FQ=225;PV4=0.38,0.014,0.13,0.14 GT:PL:GQ 0/1:255,0,255:99 chr1 55119534 . C T 95 . DP=157;VDB=0.0380;AF1=0.5;AC1=1;DP4=37,49,37,31;MQ=60;FQ=98;PV4=0.19,5.3e-63,1,1 GT:PL:GQ 0/1:125,0,255:99 chr1 55119546 . A G 222 . DP=159;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,69,77;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 55130931 . C T 74 . DP=19;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,7,2,8;MQ=59;FQ=77;PV4=1,3.5e-08,0.18,1 GT:PL:GQ 0/1:104,0,181:99 chr1 55130946 . G C 82 . DP=15;VDB=0.0053;AF1=0.5;AC1=1;DP4=2,5,2,6;MQ=58;FQ=85;PV4=1,2.7e-05,0.18,0.022 GT:PL:GQ 0/1:112,0,151:99 chr1 55130972 . C T 7.8 . DP=10;VDB=0.0059;AF1=0.5;AC1=1;DP4=1,5,0,4;MQ=58;FQ=10.4;PV4=1,3.6e-09,0.12,0.04 GT:PL:GQ 0/1:37,0,135:39 chr1 55134379 . C T 55 . DP=9;VDB=0.0008;AF1=0.5;AC1=1;DP4=2,0,7,0;MQ=60;FQ=16.1;PV4=1,0.0001,1,0.15 GT:PL:GQ 0/1:85,0,43:46 chr1 55136529 . T C 225 . DP=43;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,10,12,11;MQ=60;FQ=225;PV4=0.54,0.022,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 55139618 . G A 127 . DP=18;VDB=0.0373;AF1=0.5;AC1=1;DP4=2,3,6,6;MQ=60;FQ=91;PV4=1,7.5e-07,1,1 GT:PL:GQ 0/1:157,0,118:99 chr1 55139741 . A G 225 . DP=20;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,2,6,8;MQ=59;FQ=93;PV4=0.63,1,0.26,1 GT:PL:GQ 0/1:255,0,120:99 chr1 55152223 . C T 51 . DP=10;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,3,0,7;MQ=60;FQ=45.4;PV4=1,6.2e-06,1,0.068 GT:PL:GQ 0/1:81,0,73:75 chr1 55167773 . T A 222 . DP=29;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,19;MQ=59;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 55182300 . T A 225 . DP=37;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,8,9,11;MQ=60;FQ=225;PV4=0.75,0.45,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 55224131 . T C 149 . DP=97;VDB=0.0365;AF1=0.5;AC1=1;DP4=27,25,29,13;MQ=60;FQ=152;PV4=0.14,2.4e-23,1,1 GT:PL:GQ 0/1:179,0,255:99 chr1 55224751 . C A 101 . DP=50;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,13,11,17;MQ=60;FQ=104;PV4=1,3e-26,1,0.35 GT:PL:GQ 0/1:131,0,255:99 chr1 55251689 . T C 159 . DP=23;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,19,3;MQ=60;FQ=-93 GT:PL:GQ 1/1:192,66,0:99 chr1 55253575 . T C 130 . DP=17;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,2,13;MQ=58;FQ=-72 GT:PL:GQ 1/1:163,45,0:87 chr1 55266797 . G C 131 . DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,17,7,23;MQ=59;FQ=134;PV4=0.11,6.2e-20,1,0.33 GT:PL:GQ 0/1:161,0,255:99 chr1 55266845 . C T 74 . DP=37;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,14,1,19;MQ=59;FQ=77;PV4=0.57,1.4e-10,0.19,1 GT:PL:GQ 0/1:104,0,213:99 chr1 55271774 . A G 37 . DP=10;VDB=0.0004;AF1=0.5;AC1=1;DP4=3,2,3,1;MQ=60;FQ=40;PV4=1,0.14,1,1 GT:PL:GQ 0/1:67,0,112:70 chr1 55273422 . A T 58 . DP=6;VDB=0.0139;AF1=0.5;AC1=1;DP4=0,3,1,2;MQ=60;FQ=49.7;PV4=1,1,1,1 GT:PL:GQ 0/1:88,0,77:80 chr1 55273580 . G T 115 . DP=61;VDB=0.0398;AF1=0.5;AC1=1;DP4=22,17,12,8;MQ=60;FQ=118;PV4=1,2e-07,1,1 GT:PL:GQ 0/1:145,0,255:99 chr1 55277599 . T C 222 . DP=62;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,28;MQ=59;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr1 55279345 . CCCGGCCTCCGGCCTCCGG CCCGGCCTCCGG 19.3 . INDEL;DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,1,1;MQ=29;FQ=-40.5 GT:PL:GQ 1/1:58,6,0:10 chr1 55282556 . A G 35 . DP=9;VDB=0.0001;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=38;PV4=1,0.00028,1,0.1 GT:PL:GQ 0/1:65,0,89:68 chr1 55307501 . A G 17.1 . DP=70;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,21,8,6;MQ=60;FQ=20.1;PV4=0.54,2.5e-20,1,1 GT:PL:GQ 0/1:47,0,255:50 chr1 55318108 . C T 134 . DP=23;VDB=0.0140;AF1=0.5;AC1=1;DP4=2,8,0,12;MQ=59;FQ=137;PV4=0.19,1,1,0.26 GT:PL:GQ 0/1:164,0,187:99 chr1 55319008 . T C 21 . DP=10;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,1,3,2;MQ=60;FQ=24;PV4=1,2e-05,1,1 GT:PL:GQ 0/1:51,0,128:54 chr1 55319902 . A G 157 . DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,15,9,16;MQ=60;FQ=160;PV4=1,4.6e-12,0.16,0.32 GT:PL:GQ 0/1:187,0,255:99 chr1 55330966 . T C 62 . DP=10;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:95,30,0:57 chr1 55446664 . G C 40.1 . DP=6;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:73,18,0:33 chr1 55446671 . C T 60 . DP=9;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:93,27,0:51 chr1 55446697 . G A 124 . DP=16;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,14,1;MQ=60;FQ=-72 GT:PL:GQ 1/1:157,45,0:87 chr1 55457710 . G A 222 . DP=44;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,15,25;MQ=60;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 55457815 . C T 112 . DP=15;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:145,45,0:87 chr1 55464743 . T C 90 . DP=16;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:123,42,0:81 chr1 55464790 . C G 148 . DP=47;VDB=0.0345;AF1=1;AC1=2;DP4=1,0,40,4;MQ=59;FQ=-142;PV4=1,1,0.44,1 GT:PL:GQ 1/1:181,115,0:99 chr1 55474262 . G A 161 . DP=52;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,8,11,15;MQ=60;FQ=164;PV4=0.093,3.4e-16,1,1 GT:PL:GQ 0/1:191,0,255:99 chr1 55474325 . A C 225 . DP=63;VDB=0.0345;AF1=0.5;AC1=1;DP4=23,12,12,15;MQ=60;FQ=225;PV4=0.12,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 55516781 . G T 222 . DP=56;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,40,12;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 55518316 . C T 222 . DP=33;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,16,14;MQ=58;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 55518467 . A G 22 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,9,2,3;MQ=59;FQ=25;PV4=1,0.00043,0.028,0.49 GT:PL:GQ 0/1:52,0,255:55 chr1 55523033 . A G 199 . DP=49;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,19,25;MQ=60;FQ=-159 GT:PL:GQ 1/1:232,132,0:99 chr1 55524197 . A G 36.8 . DP=2;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:68,6,0:10 chr1 55524237 . G A 54 . DP=3;VDB=0.0187;AF1=1;AC1=2;DP4=0,0,1,2;MQ=52;FQ=-36 GT:PL:GQ 1/1:86,9,0:16 chr1 55527323 . G A 201 . DP=16;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,15;MQ=60;FQ=-75 GT:PL:GQ 1/1:234,48,0:93 chr1 55529187 . G A 160 . DP=25;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,8,15;MQ=60;FQ=-96 GT:PL:GQ 1/1:193,69,0:99 chr1 55538385 . T C,A 107 . DP=26;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,24,2;MQ=60;FQ=-102 GT:PL:GQ 1/1:140,75,0,131,52,128:99 chr1 55538552 . T G 86 . DP=76;VDB=0.0244;AF1=0.5;AC1=1;DP4=12,30,14,20;MQ=60;FQ=89;PV4=0.33,9.1e-42,1,1 GT:PL:GQ 0/1:116,0,255:99 chr1 55541174 . A G 222 . DP=24;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,18;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr1 55546895 . T C 18 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:50,9,0:15 chr1 55555285 . G A 50 . DP=16;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:83,36,0:69 chr1 55557859 . A ATT 201 . INDEL;DP=14;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,14;MQ=43;FQ=-76.5 GT:PL:GQ 1/1:242,42,0:81 chr1 55557864 . C T 144 . DP=13;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,13;MQ=41;FQ=-66 GT:PL:GQ 1/1:177,39,0:75 chr1 55562125 . G T 62 . DP=3;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:94,9,0:16 chr1 55567143 . T C 53.1 . DP=7;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,6,0;MQ=56;FQ=-45 GT:PL:GQ 1/1:86,18,0:33 chr1 55567410 . A G 173 . DP=67;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,16,48;MQ=60;FQ=-220 GT:PL:GQ 1/1:206,193,0:99 chr1 55572867 . G A 215 . DP=53;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,42,11;MQ=60;FQ=-187 GT:PL:GQ 1/1:248,160,0:99 chr1 55638075 . G A 222 . DP=75;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,56,17;MQ=59;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr1 55643837 . TAAAA TAAA 80.5 . INDEL;DP=17;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,14;MQ=60;FQ=-76.5 GT:PL:GQ 1/1:121,42,0:81 chr1 55691384 . T C 118 . DP=21;VDB=0.0384;AF1=0.5;AC1=1;DP4=6,3,7,5;MQ=59;FQ=121;PV4=1,2e-09,1,0.042 GT:PL:GQ 0/1:148,0,202:99 chr1 55691431 . G A 70 . DP=21;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,7,5,6;MQ=60;FQ=73;PV4=0.66,2.2e-11,1,1 GT:PL:GQ 0/1:100,0,210:99 chr1 56977819 . G A 59 . DP=8;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,2,1,5;MQ=60;FQ=23;PV4=1,0.00021,1,0.092 GT:PL:GQ 0/1:89,0,50:53 chr1 57111169 . C G 63 . DP=13;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,5,1,5;MQ=60;FQ=66;PV4=1,6.2e-06,1,0.34 GT:PL:GQ 0/1:93,0,158:96 chr1 57170229 . T C 67 . DP=6;VDB=0.0006;AF1=0.502;AC1=1;DP4=0,1,0,5;MQ=60;FQ=-6.96;PV4=1,0.22,1,0.43 GT:PL:GQ 0/1:97,0,21:24 chr1 57185818 . A G 222 . DP=25;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,18,4;MQ=59;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 57209695 . T C 68 . DP=52;VDB=0.0400;AF1=0.5;AC1=1;DP4=24,6,17,4;MQ=59;FQ=71;PV4=1,3.4e-22,0.4,1 GT:PL:GQ 0/1:98,0,255:99 chr1 57219631 . GAAAAAAA GAAAAAAAA 6.75 . INDEL;DP=5;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:46,15,0:17 chr1 57224460 . G C 222 . DP=59;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,33,23;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 57258485 . A G 81 . DP=32;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,9,8,5;MQ=59;FQ=84;PV4=0.72,1.6e-10,1,1 GT:PL:GQ 0/1:111,0,255:99 chr1 57258598 . C T 140 . DP=50;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,13,9,17;MQ=60;FQ=143;PV4=0.56,5.7e-28,1,0.11 GT:PL:GQ 0/1:170,0,255:99 chr1 57340727 . C A 61 . DP=18;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,6,2,8;MQ=60;FQ=64;PV4=1,9.1e-10,1,1 GT:PL:GQ 0/1:91,0,177:94 chr1 57372591 . C T 201 . DP=12;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:234,33,0:63 chr1 57383358 . C T 136 . DP=25;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,4,4,11;MQ=59;FQ=139;PV4=0.12,4.3e-09,0.21,1 GT:PL:GQ 0/1:166,0,201:99 chr1 57395251 . T C 222 . DP=33;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,10,23;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 57397301 . G A 51 . DP=3;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:83,9,0:16 chr1 57406392 . T C 17.1 . DP=4;VDB=0.0070;AF1=0.5004;AC1=1;DP4=1,0,3,0;MQ=60;FQ=3.52;PV4=1,0.015,1,0.33 GT:PL:GQ 0/1:47,0,28:31 chr1 57422484 . C T 222 . DP=108;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,51,51;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 57425888 . AGGG AGG 198 . INDEL;DP=75;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,31,5,26;MQ=60;FQ=201;PV4=1,0.0028,1,1 GT:PL:GQ 0/1:236,0,255:99 chr1 57477034 . G C 34 . DP=6;VDB=0.0133;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=36.6;PV4=1,0.26,1,1 GT:PL:GQ 0/1:64,0,74:67 chr1 57489137 . T C 84 . DP=22;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,1,11,2;MQ=60;FQ=87;PV4=1,8.2e-10,1,0.4 GT:PL:GQ 0/1:114,0,167:99 chr1 57528772 . A G 12.3 . DP=20;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,10,0,8;MQ=60;FQ=15.1;PV4=1,3.1e-09,1,0.09 GT:PL:GQ 0/1:42,0,157:44 chr1 57535198 . C A 65 . DP=21;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,9,2,10;MQ=60;FQ=68;PV4=0.49,8.9e-13,1,1 GT:PL:GQ 0/1:95,0,149:98 chr1 58996203 . T C 51 . DP=49;VDB=0.0190;AF1=0.5;AC1=1;DP4=21,4,24,0;MQ=60;FQ=54;PV4=0.11,2.2e-20,1,1 GT:PL:GQ 0/1:81,0,255:84 chr1 59004979 . C T 169 . DP=25;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,3,21;MQ=60;FQ=-99 GT:PL:GQ 1/1:202,72,0:99 chr1 59125683 . C T 35 . DP=28;VDB=0.0081;AF1=0.5;AC1=1;DP4=11,1,13,2;MQ=60;FQ=38;PV4=1,1e-15,1,0.14 GT:PL:GQ 0/1:65,0,182:68 chr1 59125894 . A G 37 . DP=8;VDB=0.0224;AF1=0.5;AC1=1;DP4=0,5,0,3;MQ=57;FQ=40;PV4=1,1,0.11,1 GT:PL:GQ 0/1:67,0,113:70 chr1 59125899 . G A 38 . DP=7;VDB=0.0224;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=57;FQ=41;PV4=1,1,0.14,1 GT:PL:GQ 0/1:68,0,99:71 chr1 59126676 . A C 15.4 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:48,15,0:24 chr1 59127024 . T G 225 . DP=61;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,15,15,12;MQ=60;FQ=225;PV4=1,0.00025,1,0.33 GT:PL:GQ 0/1:255,0,255:99 chr1 59127207 . T C 63 . DP=15;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,6,1,7;MQ=60;FQ=66;PV4=1,1.2e-09,1,0.32 GT:PL:GQ 0/1:93,0,128:96 chr1 59131311 . G T 191 . DP=31;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,6,24;MQ=60;FQ=-117 GT:PL:GQ 1/1:224,90,0:99 chr1 59134586 . G C 225 . DP=53;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,16,9,11;MQ=59;FQ=225;PV4=0.78,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 59134607 . C CAG 214 . INDEL;DP=43;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,19,23;MQ=59;FQ=-161 GT:PL:GQ 1/1:255,126,0:99 chr1 59137783 . A G 40.5 . DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:73,12,0:21 chr1 59139223 . C G 174 . DP=110;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,74,31;MQ=59;FQ=-282 GT:PL:GQ 1/1:207,255,0:99 chr1 59142713 . T C 154 . DP=51;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,39;MQ=60;FQ=-171 GT:PL:GQ 1/1:187,144,0:99 chr1 59147420 . G A 197 . DP=13;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,11,1;MQ=58;FQ=-63 GT:PL:GQ 1/1:230,36,0:69 chr1 59147926 . T C 222 . DP=92;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,40,50;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 59148118 . A T 170 . DP=118;VDB=0.0398;AF1=0.5;AC1=1;DP4=22,30,32,30;MQ=60;FQ=173;PV4=0.35,3.9e-40,1,0.34 GT:PL:GQ 0/1:200,0,255:99 chr1 59156155 . C T 108 . DP=7;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:141,18,0:33 chr1 59158632 . T C 56 . DP=12;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:89,33,0:63 chr1 59248813 . G C 214 . DP=14;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,2,12;MQ=58;FQ=-69 GT:PL:GQ 1/1:247,42,0:81 chr1 59364615 . G C 222 . DP=20;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,14,5;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr1 59364918 . G A 222 . DP=18;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,9,9;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr1 59787350 . T G 37 . DP=17;VDB=0.0006;AF1=0.5;AC1=1;DP4=2,9,1,5;MQ=60;FQ=40;PV4=1,5.9e-06,1,1 GT:PL:GQ 0/1:67,0,202:70 chr1 59844471 . G A 171 . DP=119;VDB=0.0345;AF1=0.5;AC1=1;DP4=42,25,36,16;MQ=60;FQ=174;PV4=0.56,1.2e-24,1,1 GT:PL:GQ 0/1:201,0,255:99 chr1 60228310 . TT TTCT 217 . INDEL;DP=60;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,16,13,19;MQ=60;FQ=217;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 60280749 . GT G 214 . INDEL;DP=34;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,8,24;MQ=59;FQ=-131 GT:PL:GQ 1/1:255,96,0:99 chr1 60299005 . T C 29 . DP=9;VDB=0.0033;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=60;FQ=31.9;PV4=1,6.4e-06,1,1 GT:PL:GQ 0/1:59,0,77:62 chr1 60299820 . C A,G 57 . DP=104;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,36,64;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,255,165,255,0,203:99 chr1 60330883 . C G 162 . DP=27;VDB=0.0393;AF1=0.5;AC1=1;DP4=2,14,2,9;MQ=60;FQ=165;PV4=1,0.058,1,0.34 GT:PL:GQ 0/1:192,0,240:99 chr1 60333985 . C A 6.98 . DP=5;VDB=0.0094;AF1=0.4999;AC1=1;DP4=2,1,1,1;MQ=55;FQ=9.53;PV4=1,0.02,1,0.17 GT:PL:GQ 0/1:36,0,86:37 chr1 60373500 . G T 225 . DP=56;VDB=0.0393;AF1=0.5;AC1=1;DP4=17,10,20,7;MQ=60;FQ=225;PV4=0.56,0.12,1,0.2 GT:PL:GQ 0/1:255,0,255:99 chr1 60373666 . A C 26 . DP=13;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,7,0,6;MQ=60;FQ=29;PV4=1,1.6e-05,1,1 GT:PL:GQ 0/1:56,0,134:59 chr1 60392271 . G A 136 . DP=74;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,27,13,24;MQ=59;FQ=139;PV4=0.31,5.7e-21,1,0.17 GT:PL:GQ 0/1:166,0,255:99 chr1 60466911 . ACAGCA ACA 153 . INDEL;DP=15;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,4,0,7;MQ=54;FQ=156;PV4=0.19,0.096,0.32,1 GT:PL:GQ 0/1:191,0,227:99 chr1 60475930 . C G 222 . DP=45;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,32,12;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 60503762 . T C 222 . DP=28;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,3,24;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 60505578 . A G 107 . DP=26;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,25,1;MQ=60;FQ=-105 GT:PL:GQ 1/1:140,78,0:99 chr1 61743160 . G A 225 . DP=104;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,19,32,23;MQ=60;FQ=225;PV4=1,0.012,1,0.39 GT:PL:GQ 0/1:255,0,255:99 chr1 61818422 . A G 22 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:54,9,0:15 chr1 61892301 . TG TGG 214 . INDEL;DP=75;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,49,21;MQ=60;FQ=-246 GT:PL:GQ 1/1:255,211,0:99 chr1 62231924 . TTGAT TTGATGAT 105 . INDEL;DP=7;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,4,0;MQ=47;FQ=-46.5 GT:PL:GQ 1/1:145,12,0:21 chr1 62232031 . C T 221 . DP=51;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,38,13;MQ=59;FQ=-181 GT:PL:GQ 1/1:254,154,0:99 chr1 62261168 . A G 222 . DP=81;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,35,38;MQ=60;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr1 62330080 . T G 222 . DP=66;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,35,29;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr1 62365217 . C T 53 . DP=40;VDB=0.0400;AF1=0.5;AC1=1;DP4=18,1,17,2;MQ=60;FQ=56;PV4=1,1.2e-16,1,1 GT:PL:GQ 0/1:83,0,202:86 chr1 62365428 . GAA GAAA 75.5 . INDEL;DP=11;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,5,0,5;MQ=60;FQ=53.5;PV4=1,1,1,1 GT:PL:GQ 0/1:113,0,88:91 chr1 62380124 . A G 29 . DP=5;VDB=0.0133;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=30.8;PV4=1,1,1,1 GT:PL:GQ 0/1:59,0,64:61 chr1 62380223 . G T 103 . DP=86;VDB=0.0393;AF1=0.5;AC1=1;DP4=42,8,25,10;MQ=60;FQ=106;PV4=0.19,1.1e-27,1,0.38 GT:PL:GQ 0/1:133,0,255:99 chr1 62380298 . G A 123 . DP=107;VDB=0.0399;AF1=0.5;AC1=1;DP4=28,39,11,28;MQ=60;FQ=126;PV4=0.21,5.7e-22,1,0.33 GT:PL:GQ 0/1:153,0,255:99 chr1 62393394 . A G 225 . DP=162;VDB=0.0322;AF1=0.5;AC1=1;DP4=50,28,51,29;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 62456014 . G A 225 . DP=65;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,19,11,22;MQ=60;FQ=225;PV4=0.8,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 62483599 . G A 45 . DP=63;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,14,19,11;MQ=59;FQ=48;PV4=0.61,4.4e-34,1,1 GT:PL:GQ 0/1:75,0,255:78 chr1 62483623 . A G 118 . DP=60;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,17,17,14;MQ=60;FQ=121;PV4=0.2,8.7e-20,1,1 GT:PL:GQ 0/1:148,0,255:99 chr1 62516683 . G C 163 . DP=139;VDB=0.0399;AF1=0.5;AC1=1;DP4=30,46,24,37;MQ=60;FQ=166;PV4=1,6.6e-32,1,1 GT:PL:GQ 0/1:193,0,255:99 chr1 62545085 . C T 30 . DP=48;VDB=0.0099;AF1=0.5;AC1=1;DP4=22,0,12,3;MQ=60;FQ=33;PV4=0.059,4.6e-22,1,0.022 GT:PL:GQ 0/1:60,0,184:63 chr1 62579823 . G A 112 . DP=55;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,12,18,7;MQ=60;FQ=115;PV4=0.25,4.4e-14,1,0.08 GT:PL:GQ 0/1:142,0,255:99 chr1 62594593 . C T 225 . DP=63;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,17,20,16;MQ=60;FQ=225;PV4=0.13,0.04,1,0.43 GT:PL:GQ 0/1:255,0,255:99 chr1 62594677 . T C 149 . DP=42;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,13,4,20;MQ=59;FQ=152;PV4=0.7,8.3e-12,1,1 GT:PL:GQ 0/1:179,0,242:99 chr1 62644118 . A G 11.3 . DP=7;VDB=0.0218;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=14.2;PV4=1,3.4e-05,1,1 GT:PL:GQ 0/1:41,0,78:43 chr1 62672546 . G A 101 . DP=40;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,15,11,9;MQ=59;FQ=104;PV4=0.048,9.9e-18,0.17,0.13 GT:PL:GQ 0/1:131,0,255:99 chr1 62673037 . T C 225 . DP=71;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,24,10,17;MQ=60;FQ=225;PV4=0.62,1,1,0.21 GT:PL:GQ 0/1:255,0,255:99 chr1 62673225 . G A 168 . DP=31;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,13,3,8;MQ=59;FQ=171;PV4=1,0.16,0.097,0.36 GT:PL:GQ 0/1:198,0,255:99 chr1 62675619 . C T 99 . DP=15;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,3,6,5;MQ=60;FQ=63;PV4=0.57,1.7e-05,1,0.4 GT:PL:GQ 0/1:129,0,90:93 chr1 62675892 . A G 89 . DP=108;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,42,16,26;MQ=60;FQ=92;PV4=0.84,1.2e-42,1,1 GT:PL:GQ 0/1:119,0,255:99 chr1 62676284 . C T 225 . DP=29;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,7,10,4;MQ=60;FQ=225;PV4=0.44,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 62677048 . G T 107 . DP=12;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,5,1,5;MQ=60;FQ=109;PV4=1,0.14,1,1 GT:PL:GQ 0/1:137,0,145:99 chr1 62713224 . C G 107 . DP=19;VDB=0.0359;AF1=0.5;AC1=1;DP4=7,2,7,3;MQ=60;FQ=110;PV4=1,8.7e-06,1,0.38 GT:PL:GQ 0/1:137,0,181:99 chr1 62713246 . G A 158 . DP=21;VDB=0.0384;AF1=0.5;AC1=1;DP4=7,4,4,4;MQ=60;FQ=161;PV4=0.66,1,1,1 GT:PL:GQ 0/1:188,0,218:99 chr1 62939634 . C T 160 . DP=9;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:193,27,0:51 chr1 62941409 . T C 113 . DP=126;VDB=0.0365;AF1=0.5;AC1=1;DP4=46,20,37,21;MQ=59;FQ=116;PV4=0.57,1.2e-59,0.45,0.23 GT:PL:GQ 0/1:143,0,255:99 chr1 62943264 . C T 75 . DP=13;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:108,36,0:69 chr1 62945418 . A G 130 . DP=8;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,4,4;MQ=60;FQ=-51 GT:PL:GQ 1/1:163,24,0:45 chr1 62953183 . C T 188 . DP=9;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,7;MQ=57;FQ=-54 GT:PL:GQ 1/1:221,27,0:51 chr1 62960250 . T C 8.44 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr1 62961928 . T C 47.3 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:80,15,0:27 chr1 62973795 . A G 5.44 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:36,9,0:9 chr1 62976472 . T G 40.1 . DP=6;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:73,18,0:33 chr1 63001120 . A C 68 . DP=29;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,25,4;MQ=60;FQ=-114 GT:PL:GQ 1/1:101,87,0:99 chr1 63027411 . AG A 178 . INDEL;DP=11;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-67.5 GT:PL:GQ 1/1:219,33,0:63 chr1 63066704 . TTGT TT 136 . INDEL;DP=16;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,3,6,0;MQ=60;FQ=139;PV4=0.25,4.5e-08,1,0.43 GT:PL:GQ 0/1:174,0,255:99 chr1 63113511 . C A 135 . DP=23;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,20;MQ=60;FQ=-96 GT:PL:GQ 1/1:168,69,0:99 chr1 63113719 . T C 167 . DP=20;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,18,0;MQ=60;FQ=-81 GT:PL:GQ 1/1:200,54,0:99 chr1 63871881 . A G 12.3 . DP=12;VDB=0.0008;AF1=0.5;AC1=1;DP4=3,5,2,2;MQ=60;FQ=15.1;PV4=1,7.7e-07,1,1 GT:PL:GQ 0/1:42,0,186:44 chr1 63872871 . A G 144 . DP=14;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,5,1,7;MQ=60;FQ=87;PV4=1,0.028,1,0.42 GT:PL:GQ 0/1:174,0,114:99 chr1 63881552 . C T 19.1 . DP=27;VDB=0.0271;AF1=0.5;AC1=1;DP4=15,2,9,1;MQ=60;FQ=22;PV4=1,3.1e-15,1,1 GT:PL:GQ 0/1:49,0,233:52 chr1 63912563 . ACAATTCAA ACAA 172 . INDEL;DP=24;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,12,2,4;MQ=59;FQ=175;PV4=1,1,0.046,1 GT:PL:GQ 0/1:210,0,255:99 chr1 63975830 . T C 74.3 . DP=5;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:107,15,0:27 chr1 63991140 . T C 114 . DP=6;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:147,18,0:33 chr1 63991267 . T C 212 . DP=22;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,2,9,4;MQ=59;FQ=132;PV4=1,1,0.22,1 GT:PL:GQ 0/1:242,0,159:99 chr1 63999087 . T C 15.1 . DP=6;VDB=0.0143;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=17.7;PV4=1,0.011,1,0.48 GT:PL:GQ 0/1:45,0,55:47 chr1 64015217 . G A 155 . DP=42;VDB=0.0398;AF1=0.5;AC1=1;DP4=16,11,6,8;MQ=56;FQ=158;PV4=0.35,0.1,6.2e-06,1 GT:PL:GQ 0/1:185,0,255:99 chr1 64114301 . T C 216 . DP=25;VDB=0.0359;AF1=0.5;AC1=1;DP4=3,8,5,9;MQ=60;FQ=178;PV4=1,0.18,1,0.17 GT:PL:GQ 0/1:246,0,205:99 chr1 64117537 . G T 122 . DP=55;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,20,4,20;MQ=60;FQ=125;PV4=1,1e-15,0.16,1 GT:PL:GQ 0/1:152,0,255:99 chr1 64125234 . G T 225 . DP=30;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,1,13,5;MQ=59;FQ=157;PV4=0.36,0.17,0.21,1 GT:PL:GQ 0/1:255,0,184:99 chr1 64125368 . C T 210 . DP=40;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,11,5,10;MQ=59;FQ=213;PV4=0.32,1,0.37,1 GT:PL:GQ 0/1:240,0,255:99 chr1 64125383 . G A 130 . DP=42;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,15,8,11;MQ=58;FQ=133;PV4=0.75,8.6e-12,0.23,0.081 GT:PL:GQ 0/1:160,0,255:99 chr1 64125439 . A C 130 . DP=30;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,14,6,10;MQ=58;FQ=133;PV4=0.019,5.1e-16,0.091,1 GT:PL:GQ 0/1:160,0,171:99 chr1 64515379 . C T 222 . DP=47;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,33,13;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 64608329 . G T 222 . DP=62;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,28,31;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 64624612 . G A 130 . DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:163,21,0:39 chr1 64643277 . C T 225 . DP=73;VDB=0.0398;AF1=0.5;AC1=1;DP4=23,17,18,15;MQ=60;FQ=225;PV4=0.82,0.23,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr1 64680682 . C G 31 . DP=3;VDB=0.0188;AF1=0.5004;AC1=1;DP4=0,1,0,2;MQ=60;FQ=3.55;PV4=1,1,1,1 GT:PL:GQ 0/1:61,0,28:31 chr1 64698411 . T C 60 . DP=15;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,5,1,8;MQ=60;FQ=63;PV4=1,5.8e-11,1,0.25 GT:PL:GQ 0/1:90,0,143:93 chr1 64709891 . A G 127 . DP=50;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,18,4,23;MQ=60;FQ=130;PV4=1,3.1e-14,1,0.066 GT:PL:GQ 0/1:157,0,251:99 chr1 64726414 . A C 113 . DP=18;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,3,15;MQ=59;FQ=-81 GT:PL:GQ 1/1:146,54,0:99 chr1 65016349 . A T 222 . DP=107;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,46,56;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 65045602 . TAAAAAAAAAAAA TAAAAAAAAAAA 11.8 . INDEL;DP=15;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,2,9;MQ=60;FQ=-67.5 GT:PL:GQ 1/1:52,33,0:41 chr1 65068638 . T C 132 . DP=20;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,17;MQ=59;FQ=-84 GT:PL:GQ 1/1:165,57,0:99 chr1 65099978 . G A 134 . DP=22;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,2,18;MQ=60;FQ=-87 GT:PL:GQ 1/1:167,60,0:99 chr1 65107372 . C T 222 . DP=33;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,30,1;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 65113568 . T C 222 . DP=56;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,33;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr1 65301669 . C A 8.64 . DP=7;VDB=0.0080;AF1=0.5;AC1=1;DP4=4,0,3,0;MQ=60;FQ=11.3;PV4=1,0.0016,1,1 GT:PL:GQ 0/1:38,0,96:40 chr1 65310489 . T C 225 . DP=30;VDB=0.0190;AF1=0.5;AC1=1;DP4=8,5,11,5;MQ=60;FQ=224;PV4=0.71,0.25,1,0.34 GT:PL:GQ 0/1:255,0,253:99 chr1 65316675 . G A 223 . DP=29;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,10,4,11;MQ=59;FQ=193;PV4=1,1,1,1 GT:PL:GQ 0/1:253,0,220:99 chr1 65321388 . G A 117 . DP=47;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,13,11,14;MQ=59;FQ=120;PV4=0.76,9.4e-20,1,1 GT:PL:GQ 0/1:147,0,255:99 chr1 65325970 . C T 225 . DP=46;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,22,6,11;MQ=60;FQ=225;PV4=0.5,0.39,1,0.13 GT:PL:GQ 0/1:255,0,255:99 chr1 65330682 . G A 25.1 . DP=6;VDB=0.0002;AF1=0.5102;AC1=1;DP4=0,1,0,4;MQ=55;FQ=-13.2;PV4=1,0.0023,1,1 GT:PL:GQ 0/1:55,0,14:17 chr1 65830608 . T C 33 . DP=13;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,7,0,6;MQ=60;FQ=36;PV4=1,1.9e-05,1,1 GT:PL:GQ 0/1:63,0,128:66 chr1 65844963 . A G 150 . DP=22;VDB=0.0140;AF1=0.5;AC1=1;DP4=7,0,15,0;MQ=60;FQ=92;PV4=1,0.5,1,1 GT:PL:GQ 0/1:180,0,119:99 chr1 65858145 . G A 9.52 . DP=18;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,6,5,1;MQ=60;FQ=12.3;PV4=0.3,2.5e-06,1,1 GT:PL:GQ 0/1:39,0,238:41 chr1 65860687 . A C 84 . DP=99;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,25,18,35;MQ=60;FQ=87;PV4=0.53,9.4e-48,1,1 GT:PL:GQ 0/1:114,0,255:99 chr1 65867391 . C G 225 . DP=54;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,8,19,6;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 65886398 . T C 128 . DP=23;VDB=0.0053;AF1=0.5;AC1=1;DP4=8,3,8,4;MQ=59;FQ=131;PV4=1,0.19,0.18,1 GT:PL:GQ 0/1:158,0,176:99 chr1 65886448 . T C 139 . DP=34;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,7,7,8;MQ=60;FQ=142;PV4=0.49,1.6e-08,1,1 GT:PL:GQ 0/1:169,0,255:99 chr1 65887013 . A C 146 . DP=80;VDB=0.0345;AF1=0.5;AC1=1;DP4=23,8,34,11;MQ=59;FQ=149;PV4=1,1.1e-29,1,0.48 GT:PL:GQ 0/1:176,0,255:99 chr1 66036501 . G T 55 . DP=13;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:88,33,0:63 chr1 66731886 . G C 107 . DP=5;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:140,15,0:27 chr1 66732386 . G A 202 . DP=60;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,30,26;MQ=60;FQ=-196 GT:PL:GQ 1/1:235,169,0:99 chr1 66732529 . A T 38.1 . DP=7;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:71,21,0:39 chr1 66829262 . A G 105 . DP=59;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,17,2,32;MQ=60;FQ=108;PV4=0.099,9.7e-23,1,0.4 GT:PL:GQ 0/1:135,0,255:99 chr1 66831256 . CAA CAAA 204 . INDEL;DP=31;VDB=0.0081;AF1=0.5;AC1=1;DP4=9,5,14,3;MQ=60;FQ=167;PV4=0.41,1,1,0.23 GT:PL:GQ 0/1:242,0,202:99 chr1 66831370 . G A 219 . DP=97;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,70,26;MQ=60;FQ=-282 GT:PL:GQ 1/1:252,255,0:99 chr1 67000103 . A G 116 . DP=66;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,27,7,18;MQ=59;FQ=119;PV4=0.79,1.7e-18,1,1 GT:PL:GQ 0/1:146,0,255:99 chr1 67000162 . T G 21 . DP=25;VDB=0.0019;AF1=0.5;AC1=1;DP4=3,15,1,6;MQ=60;FQ=24;PV4=1,7.9e-10,1,1 GT:PL:GQ 0/1:51,0,255:54 chr1 67094171 . G A 113 . DP=72;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,20,11,21;MQ=60;FQ=116;PV4=0.46,1.9e-31,1,1 GT:PL:GQ 0/1:143,0,255:99 chr1 67101802 . A G 45 . DP=6;VDB=0.0080;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=47.6;PV4=1,0.11,1,0.04 GT:PL:GQ 0/1:75,0,85:78 chr1 67109335 . A G 63 . DP=77;VDB=0.0298;AF1=0.5;AC1=1;DP4=33,10,27,7;MQ=60;FQ=66;PV4=1,2.7e-41,1,1 GT:PL:GQ 0/1:93,0,255:96 chr1 67126114 . A G 222 . DP=107;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,66,34;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 67133111 . T C 109 . DP=38;VDB=0.0190;AF1=0.5;AC1=1;DP4=15,3,14,6;MQ=60;FQ=112;PV4=0.45,1.1e-16,1,1 GT:PL:GQ 0/1:139,0,243:99 chr1 67136537 . C T 32 . DP=12;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,1,5,1;MQ=60;FQ=35;PV4=1,5.2e-06,1,0.45 GT:PL:GQ 0/1:62,0,145:65 chr1 67138877 . AG A 100 . INDEL;DP=21;VDB=0.0244;AF1=0.5;AC1=1;DP4=10,2,9,0;MQ=60;FQ=103;PV4=0.49,0.063,1,1 GT:PL:GQ 0/1:138,0,220:99 chr1 67142675 . T C 63 . DP=55;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,6,25,3;MQ=60;FQ=66;PV4=0.27,3.7e-22,1,1 GT:PL:GQ 0/1:93,0,255:96 chr1 67142790 . T A 225 . DP=69;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,24,15,23;MQ=60;FQ=225;PV4=0.062,0.15,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 67145322 . C A 222 . DP=139;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,95,36;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 67149706 . G C 32 . DP=3;VDB=0.0089;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:64,9,0:16 chr1 67155862 . TCTCCT TCT 217 . INDEL;DP=79;VDB=0.0322;AF1=0.5;AC1=1;DP4=23,17,19,17;MQ=59;FQ=217;PV4=0.82,6e-05,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 67160336 . A G 222 . DP=38;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,5,32;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 67160884 . A G 75 . DP=7;VDB=0.0014;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=56;FQ=21;PV4=1,1,1,1 GT:PL:GQ 0/1:105,0,48:51 chr1 67160981 . C T 10.4 . DP=47;VDB=0.0014;AF1=0.5;AC1=1;DP4=20,3,3,7;MQ=59;FQ=13.2;PV4=0.0024,3.3e-17,1,0.41 GT:PL:GQ 0/1:40,0,255:42 chr1 67194911 . TTCTCTCTCT TTCTCTCT 217 . INDEL;DP=40;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,3,17,5;MQ=59;FQ=217;PV4=0.71,1.5e-06,0.19,0.23 GT:PL:GQ 0/1:255,0,255:99 chr1 67242200 . G A 159 . DP=20;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,10,1,9;MQ=60;FQ=137;PV4=1,0.24,1,1 GT:PL:GQ 0/1:189,0,164:99 chr1 67243024 . C A 169 . DP=105;VDB=0.0399;AF1=0.5;AC1=1;DP4=25,24,28,25;MQ=60;FQ=172;PV4=1,3e-41,1,0.35 GT:PL:GQ 0/1:199,0,255:99 chr1 67266756 . T A 222 . DP=28;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,17,11;MQ=60;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 67292473 . A AT 103 . INDEL;DP=27;VDB=0.0271;AF1=1;AC1=2;DP4=1,0,24,2;MQ=60;FQ=-90.5;PV4=1,1,1,0.2 GT:PL:GQ 1/1:144,56,0:99 chr1 67292478 . T A 83 . DP=35;VDB=0.0322;AF1=1;AC1=2;DP4=1,0,27,3;MQ=58;FQ=-82;PV4=1,8.2e-10,0.37,0.18 GT:PL:GQ 1/1:116,55,0:99 chr1 67303303 . A G 36 . DP=8;VDB=0.0027;AF1=0.5;AC1=1;DP4=3,1,3,1;MQ=60;FQ=39;PV4=1,0.0027,1,1 GT:PL:GQ 0/1:66,0,106:69 chr1 67390416 . G C 170 . DP=88;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,32,19,17;MQ=60;FQ=173;PV4=0.19,2.4e-10,0.12,0.055 GT:PL:GQ 0/1:200,0,255:99 chr1 67390468 . C G 135 . DP=62;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,31,7,15;MQ=60;FQ=138;PV4=0.34,9.7e-12,0.096,1 GT:PL:GQ 0/1:165,0,255:99 chr1 67401623 . act a 217 . INDEL;DP=45;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,11,10,12;MQ=58;FQ=217;PV4=0.77,2.1e-06,0.035,0.3 GT:PL:GQ 0/1:255,0,255:99 chr1 67425311 . T G 45 . DP=13;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,1,6,1;MQ=60;FQ=48;PV4=1,0.0029,1,1 GT:PL:GQ 0/1:75,0,111:78 chr1 67436446 . A G 25 . DP=8;VDB=0.0208;AF1=0.5;AC1=1;DP4=4,1,2,0;MQ=60;FQ=28;PV4=1,1,1,1 GT:PL:GQ 0/1:55,0,127:58 chr1 67438535 . A T 83 . DP=49;VDB=0.0140;AF1=0.5;AC1=1;DP4=16,2,22,8;MQ=60;FQ=86;PV4=0.28,9.4e-27,0.22,1 GT:PL:GQ 0/1:113,0,221:99 chr1 67442210 . C T 45 . DP=21;VDB=0.0025;AF1=0.5;AC1=1;DP4=9,1,9,1;MQ=60;FQ=48;PV4=1,4.9e-10,1,1 GT:PL:GQ 0/1:75,0,176:78 chr1 67442275 . C T 225 . DP=74;VDB=0.0398;AF1=0.5;AC1=1;DP4=32,8,23,11;MQ=60;FQ=225;PV4=0.29,0.077,1,0.057 GT:PL:GQ 0/1:255,0,255:99 chr1 67447450 . A G 146 . DP=21;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,0,13,0;MQ=59;FQ=82;PV4=1,1,1,1 GT:PL:GQ 0/1:176,0,109:99 chr1 67452322 . G A 73 . DP=9;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=60;FQ=75.2;PV4=1,1,1,1 GT:PL:GQ 0/1:103,0,110:99 chr1 67512903 . G T 58 . DP=25;VDB=0.0066;AF1=0.5;AC1=1;DP4=13,3,7,2;MQ=60;FQ=61;PV4=1,5.5e-13,1,1 GT:PL:GQ 0/1:88,0,255:91 chr1 67512920 . A C 62 . DP=28;VDB=0.0216;AF1=0.5;AC1=1;DP4=12,3,8,4;MQ=59;FQ=65;PV4=0.66,2.6e-15,1,1 GT:PL:GQ 0/1:92,0,254:95 chr1 67518420 . T A 72 . DP=58;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,7,21,3;MQ=60;FQ=75;PV4=0.49,4.1e-26,0.12,0.37 GT:PL:GQ 0/1:102,0,255:99 chr1 67518534 . C T 179 . DP=104;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,27,29,28;MQ=60;FQ=182;PV4=0.23,2.1e-35,0.11,1 GT:PL:GQ 0/1:209,0,255:99 chr1 67558739 . C T 127 . DP=14;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,0,4,3;MQ=60;FQ=103;PV4=0.19,0.01,1,0.097 GT:PL:GQ 0/1:157,0,130:99 chr1 67560897 . A G 19.1 . DP=35;VDB=0.0244;AF1=0.5;AC1=1;DP4=20,4,10,0;MQ=60;FQ=22;PV4=0.3,3.3e-10,1,1 GT:PL:GQ 0/1:49,0,255:52 chr1 67560956 . C T 160 . DP=61;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,12,17,11;MQ=60;FQ=163;PV4=1,1.7e-18,1,1 GT:PL:GQ 0/1:190,0,255:99 chr1 67577367 . A T 100 . DP=30;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,8,5,9;MQ=60;FQ=103;PV4=0.71,5.4e-14,1,1 GT:PL:GQ 0/1:130,0,255:99 chr1 67579386 . A G 66 . DP=17;VDB=0.0081;AF1=0.5;AC1=1;DP4=6,1,8,2;MQ=60;FQ=69;PV4=1,6.9e-11,1,1 GT:PL:GQ 0/1:96,0,154:99 chr1 67591660 . G A 18.8 . DP=2;VDB=0.0182;AF1=1;AC1=2;DP4=0,0,1,1;MQ=47;FQ=-33 GT:PL:GQ 1/1:50,6,0:10 chr1 67648460 . T C 126 . DP=46;VDB=0.0164;AF1=0.5;AC1=1;DP4=20,3,16,5;MQ=60;FQ=129;PV4=0.45,1.7e-16,1,1 GT:PL:GQ 0/1:156,0,255:99 chr1 67672765 . G A 153 . DP=41;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,9,10,16;MQ=58;FQ=156;PV4=1,4.6e-19,1,0.38 GT:PL:GQ 0/1:183,0,245:99 chr1 67685387 . T C 128 . DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,20,6,15;MQ=59;FQ=131;PV4=1,4e-13,0.42,1 GT:PL:GQ 0/1:158,0,255:99 chr1 67795319 . T C 222 . DP=60;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,31;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 67852141 . A G 186 . DP=26;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,26,0;MQ=59;FQ=-105 GT:PL:GQ 1/1:219,78,0:99 chr1 67852335 . G A 222 . DP=104;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,55,46;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 67861520 . C A 204 . DP=74;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,49,22;MQ=60;FQ=-241 GT:PL:GQ 1/1:237,214,0:99 chr1 68151980 . T G 3.01 . DP=7;VDB=0.0060;AF1=0.4997;AC1=1;DP4=4,0,3,0;MQ=60;FQ=4.77;PV4=1,0.014,1,0.14 GT:PL:GQ 0/1:30,0,78:28 chr1 68173264 . C T 175 . DP=113;VDB=0.0400;AF1=0.5;AC1=1;DP4=26,24,34,24;MQ=60;FQ=178;PV4=0.56,9.5e-27,1,1 GT:PL:GQ 0/1:205,0,255:99 chr1 68603586 . C T 225 . DP=67;VDB=0.0398;AF1=0.5;AC1=1;DP4=8,21,20,16;MQ=59;FQ=225;PV4=0.043,1,1,0.4 GT:PL:GQ 0/1:255,0,255:99 chr1 68603731 . A G 158 . DP=10;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:191,30,0:57 chr1 68614013 . A G 113 . DP=32;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,28;MQ=60;FQ=-117 GT:PL:GQ 1/1:146,90,0:99 chr1 68620762 . G A 122 . DP=110;VDB=0.0400;AF1=0.5;AC1=1;DP4=32,16,38,19;MQ=59;FQ=125;PV4=1,2.9e-44,0.054,0.056 GT:PL:GQ 0/1:152,0,255:99 chr1 68624878 . C T 225 . DP=89;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,20,14,27;MQ=59;FQ=225;PV4=0.052,0.15,1,0.25 GT:PL:GQ 0/1:255,0,255:99 chr1 68693921 . G C 225 . DP=32;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,4,10,5;MQ=60;FQ=213;PV4=0.7,1,1,1 GT:PL:GQ 0/1:255,0,240:99 chr1 68905358 . G C 223 . DP=64;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,27,3,26;MQ=60;FQ=224;PV4=0.32,1,0.14,0.32 GT:PL:GQ 0/1:253,0,255:99 chr1 68915479 . A T 22.8 . DP=4;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:54,6,0:10 chr1 68947318 . CAAAAA CAAAAAA 77.5 . INDEL;DP=74;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,29,8,19;MQ=59;FQ=80.5;PV4=1,1,0.074,1 GT:PL:GQ 0/1:115,0,146:99 chr1 68949139 . T C 31 . DP=21;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,12,0,8;MQ=58;FQ=34;PV4=1,8.5e-09,0.37,1 GT:PL:GQ 0/1:61,0,200:64 chr1 70034370 . CC CCAGCCGCGTGC 148 . INDEL;DP=41;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,1,25;MQ=34;FQ=-113 GT:PL:GQ 1/1:189,78,0:99 chr1 70304758 . A G 213 . DP=44;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,27,15;MQ=59;FQ=-153 GT:PL:GQ 1/1:246,126,0:99 chr1 70397087 . T C 222 . DP=139;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,78,59;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 70587360 . C T 198 . DP=14;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,1;MQ=60;FQ=-69 GT:PL:GQ 1/1:231,42,0:81 chr1 70831841 . C T 77 . DP=22;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,2,9,5;MQ=60;FQ=80;PV4=1,3.8e-08,1,1 GT:PL:GQ 0/1:107,0,140:99 chr1 70896165 . G A 83 . DP=11;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,2,1,8;MQ=60;FQ=15.1;PV4=1,0.00011,1,0.2 GT:PL:GQ 0/1:113,0,42:45 chr1 70897652 . A T 31 . DP=19;VDB=0.0033;AF1=0.5;AC1=1;DP4=10,0,8,0;MQ=59;FQ=34;PV4=1,6.4e-05,1,1 GT:PL:GQ 0/1:61,0,149:64 chr1 70904523 . Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgt TTGTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgt,TTGTGTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 202 . INDEL;DP=45;VDB=0.0118;AF1=1;AC1=2;DP4=0,1,0,13;MQ=57;FQ=-39.5;PV4=1,1,0.35,1 GT:PL:GQ 1/1:255,20,15,231,0,247:9 chr1 71331498 . A G 163 . DP=26;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,11;MQ=59;FQ=-96 GT:PL:GQ 1/1:196,69,0:99 chr1 71334870 . C T 64 . DP=15;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,1,7,1;MQ=60;FQ=67;PV4=1,0.00012,1,0.13 GT:PL:GQ 0/1:94,0,145:97 chr1 71419499 . C T 107 . DP=14;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,2,12;MQ=60;FQ=-69 GT:PL:GQ 1/1:140,42,0:81 chr1 71536574 . G C 130 . DP=28;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,5,5,11;MQ=60;FQ=133;PV4=0.25,1.6e-09,1,0.3 GT:PL:GQ 0/1:160,0,226:99 chr1 71536629 . A G 178 . DP=19;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,7,2,9;MQ=60;FQ=129;PV4=1,1,1,0.46 GT:PL:GQ 0/1:208,0,156:99 chr1 72058367 . C T 75.5 . DP=4;VDB=0.0049;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:108,12,0:21 chr1 72058405 . T C 65 . DP=9;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:98,24,0:45 chr1 72058552 . G A 169 . DP=34;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,23,11;MQ=60;FQ=-129 GT:PL:GQ 1/1:202,102,0:99 chr1 74507711 . T G 6.79 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,0,2;MQ=47;FQ=-33 GT:PL:GQ 1/1:37,6,0:7 chr1 74575182 . C T 144 . DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,6,9;MQ=60;FQ=-72 GT:PL:GQ 1/1:177,45,0:87 chr1 74646514 . C T 71 . DP=43;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,41;MQ=60;FQ=-153 GT:PL:GQ 1/1:104,126,0:99 chr1 74648182 . A C 107 . DP=18;VDB=0.0081;AF1=0.5;AC1=1;DP4=8,1,7,0;MQ=60;FQ=110;PV4=1,1,1,1 GT:PL:GQ 0/1:137,0,182:99 chr1 74648329 . G A 155 . DP=100;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,24,31,20;MQ=60;FQ=158;PV4=0.42,3.8e-39,1,1 GT:PL:GQ 0/1:185,0,255:99 chr1 74664149 . T C 225 . DP=60;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,19,12,18;MQ=60;FQ=225;PV4=0.59,1,1,0.36 GT:PL:GQ 0/1:255,0,255:99 chr1 74665493 . G A 147 . DP=86;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,32,13,28;MQ=60;FQ=150;PV4=0.31,1e-30,1,1 GT:PL:GQ 0/1:177,0,255:99 chr1 74666507 . T C 53 . DP=15;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,3,4,3;MQ=57;FQ=56;PV4=1,9.5e-08,0.074,1 GT:PL:GQ 0/1:83,0,174:86 chr1 74669973 . T G 59 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:91,9,0:16 chr1 74670172 . A G 72 . DP=42;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,12,8,11;MQ=59;FQ=75;PV4=1,8.1e-20,1,1 GT:PL:GQ 0/1:102,0,255:99 chr1 74671519 . A G 35 . DP=17;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,9,1,5;MQ=60;FQ=38;PV4=1,8.2e-10,1,1 GT:PL:GQ 0/1:65,0,192:68 chr1 74701295 . T A 30.5 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:63,12,0:21 chr1 74705494 . G T 189 . DP=43;VDB=0.0190;AF1=0.5;AC1=1;DP4=24,3,12,3;MQ=59;FQ=192;PV4=0.65,1,1,1 GT:PL:GQ 0/1:219,0,255:99 chr1 74716515 . CTTTTTTTTTTTTTTTT CTTTTTTTTTTTTTTT 7.34 . INDEL;DP=50;VDB=0.0244;AF1=1;AC1=2;DP4=0,4,7,25;MQ=60;FQ=-92.5;PV4=0.57,1,1,0.15 GT:PL:GQ 1/1:47,58,0:58 chr1 74818872 . G A 26 . DP=3;VDB=0.0089;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:58,9,0:16 chr1 74819077 . T G 225 . DP=67;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,21,10,27;MQ=59;FQ=225;PV4=0.79,0.36,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 74836154 . T G 8.64 . DP=38;VDB=0.0081;AF1=0.5;AC1=1;DP4=3,20,1,12;MQ=59;FQ=11.3;PV4=1,1.3e-16,0.34,1 GT:PL:GQ 0/1:38,0,255:40 chr1 74841173 . A C 131 . DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:164,21,0:39 chr1 74841190 . G C 16.1 . DP=8;VDB=0.0059;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=19.1;PV4=1,0.082,1,1 GT:PL:GQ 0/1:46,0,82:49 chr1 74883759 . C G 140 . DP=11;VDB=0.0033;AF1=0.5;AC1=1;DP4=3,0,7,1;MQ=60;FQ=30;PV4=1,1,1,1 GT:PL:GQ 0/1:170,0,57:60 chr1 74936374 . A G 126 . DP=66;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,12,19,9;MQ=60;FQ=129;PV4=1,8.5e-16,1,1 GT:PL:GQ 0/1:156,0,255:99 chr1 74936454 . G C 89 . DP=98;VDB=0.0399;AF1=0.5;AC1=1;DP4=31,24,25,17;MQ=60;FQ=92;PV4=0.84,2.3e-41,0.42,0.061 GT:PL:GQ 0/1:119,0,255:99 chr1 74937749 . A G 225 . DP=144;VDB=0.0365;AF1=0.5;AC1=1;DP4=35,27,50,27;MQ=60;FQ=225;PV4=0.38,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 74941210 . C T 157 . DP=161;VDB=0.0392;AF1=0.5;AC1=1;DP4=46,39,44,28;MQ=60;FQ=160;PV4=0.42,1.1e-42,0.14,1 GT:PL:GQ 0/1:187,0,255:99 chr1 74941293 . G A 161 . DP=204;VDB=0.0365;AF1=0.5;AC1=1;DP4=50,48,52,49;MQ=60;FQ=164;PV4=1,1.4e-78,0.082,1 GT:PL:GQ 0/1:191,0,255:99 chr1 75006027 . A G 85 . DP=69;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,27,8,21;MQ=60;FQ=88;PV4=0.79,1.3e-34,1,1 GT:PL:GQ 0/1:115,0,255:99 chr1 75006076 . G A 35 . DP=34;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,18,0,15;MQ=59;FQ=38;PV4=1,1.5e-18,0.058,0.027 GT:PL:GQ 0/1:65,0,183:68 chr1 75036783 . T C 210 . DP=40;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,29,10;MQ=60;FQ=-144 GT:PL:GQ 1/1:243,117,0:99 chr1 75036812 . C T 222 . DP=56;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,41,14;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 75037845 . A G 225 . DP=87;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,26,15,23;MQ=60;FQ=225;PV4=0.82,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 75038228 . A C 127 . DP=214;VDB=0.0345;AF1=0.5;AC1=1;DP4=50,62,41,57;MQ=60;FQ=130;PV4=0.78,3.1e-84,1,1 GT:PL:GQ 0/1:157,0,255:99 chr1 75072264 . G T 138 . DP=36;VDB=0.0042;AF1=0.5;AC1=1;DP4=19,0,17,0;MQ=59;FQ=141;PV4=1,0.091,0.15,0.078 GT:PL:GQ 0/1:168,0,183:99 chr1 75097426 . G C 151 . DP=52;VDB=0.0244;AF1=0.5;AC1=1;DP4=21,5,16,9;MQ=59;FQ=154;PV4=0.22,5e-24,0.49,0.11 GT:PL:GQ 0/1:181,0,255:99 chr1 75108863 . A C 222 . DP=24;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,19;MQ=58;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 75172001 . T A 9.52 . DP=51;VDB=0.0322;AF1=0.5;AC1=1;DP4=25,2,20,0;MQ=60;FQ=12.3;PV4=0.5,1.5e-30,1,1 GT:PL:GQ 0/1:39,0,247:41 chr1 75172756 . TAAAAAAAAAAAAAA TAAAAAAAAAAAA 9.19 . INDEL;DP=34;VDB=0.0380;AF1=0.5207;AC1=1;DP4=6,8,6,8;MQ=58;FQ=-23.5;PV4=1,1,1,1 GT:PL:GQ 0/1:46,0,11:15 chr1 75190452 . C T 127 . DP=68;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,18,15,14;MQ=60;FQ=130;PV4=1,2.3e-14,1,1 GT:PL:GQ 0/1:157,0,255:99 chr1 75199152 . C T 89 . DP=23;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,21;MQ=60;FQ=-93 GT:PL:GQ 1/1:122,66,0:99 chr1 75214390 . G C 120 . DP=28;VDB=0.0384;AF1=0.5;AC1=1;DP4=8,2,12,4;MQ=60;FQ=123;PV4=1,8.4e-13,1,0.49 GT:PL:GQ 0/1:150,0,189:99 chr1 75603055 . A G 75 . DP=16;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,15;MQ=60;FQ=-75 GT:PL:GQ 1/1:108,48,0:93 chr1 75603101 . A G 33 . DP=4;VDB=0.0186;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=25.6;PV4=1,1,1,1 GT:PL:GQ 0/1:63,0,53:56 chr1 75614380 . CTTTTtttttttttt CTTTtttttttttt 23.5 . INDEL;DP=41;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,4,25;MQ=59;FQ=-122 GT:PL:GQ 1/1:64,87,0:99 chr1 75626420 . A T 53 . DP=41;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,39,0;MQ=60;FQ=-144 GT:PL:GQ 1/1:86,117,0:99 chr1 75672376 . A G 222 . DP=155;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,55,93;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 75681351 . A T 27 . DP=3;VDB=0.0098;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:59,9,0:16 chr1 75681511 . T C 217 . DP=43;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,22,20;MQ=60;FQ=-153 GT:PL:GQ 1/1:250,126,0:99 chr1 75685643 . T C 78 . DP=15;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,14;MQ=60;FQ=-69 GT:PL:GQ 1/1:111,42,0:81 chr1 75716925 . C T 222 . DP=54;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,18,36;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr1 75740845 . A G 75 . DP=10;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:108,30,0:57 chr1 76007232 . C T 14.2 . DP=15;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,7,0,5;MQ=60;FQ=17.1;PV4=0.51,3.5e-07,1,1 GT:PL:GQ 0/1:44,0,196:47 chr1 76143443 . A G 220 . DP=27;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,8,17;MQ=53;FQ=-102 GT:PL:GQ 1/1:253,75,0:99 chr1 76143458 . T C 222 . DP=25;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,17;MQ=52;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 76143505 . T C 114 . DP=9;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,9;MQ=38;FQ=-54 GT:PL:GQ 1/1:147,27,0:51 chr1 76190569 . C G 85 . DP=18;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81 GT:PL:GQ 1/1:118,54,0:99 chr1 76194054 . C G 176 . DP=17;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,16,0;MQ=60;FQ=-75 GT:PL:GQ 1/1:209,48,0:93 chr1 76194229 . GTTTT GTTT 161 . INDEL;DP=25;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,3,21;MQ=60;FQ=-107 GT:PL:GQ 1/1:202,72,0:99 chr1 76194306 . A G 52.3 . DP=5;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:85,15,0:27 chr1 76198436 . T C 222 . DP=28;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,6,20;MQ=58;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 76198785 . G A 222 . DP=177;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,78,97;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 76199345 . C G 222 . DP=81;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,11,69;MQ=60;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr1 76205643 . C A 222 . DP=19;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,14,4;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr1 76227022 . A G 197 . DP=43;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,8,34;MQ=59;FQ=-153 GT:PL:GQ 1/1:230,126,0:99 chr1 76234886 . A G 134 . DP=10;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,5;MQ=60;FQ=-57 GT:PL:GQ 1/1:167,30,0:57 chr1 76252011 . G A 222 . DP=32;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,13;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 76252687 . T C 222 . DP=25;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,18,3;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 76255228 . G A 48.1 . DP=8;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:81,21,0:39 chr1 76257892 . A T 206 . DP=49;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,34,13;MQ=60;FQ=-168 GT:PL:GQ 1/1:239,141,0:99 chr1 76269372 . T C 112 . DP=6;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:145,18,0:33 chr1 76276353 . T C 65.8 . DP=18;VDB=0.0190;AF1=1;AC1=2;DP4=1,0,15,1;MQ=60;FQ=-37;PV4=1,3.6e-06,1,0.27 GT:PL:GQ 1/1:98,10,0:17 chr1 76333163 . T G 166 . DP=25;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,16,7;MQ=59;FQ=-96 GT:PL:GQ 1/1:199,69,0:99 chr1 76346920 . C CAT 214 . INDEL;DP=26;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,22,4;MQ=60;FQ=-113 GT:PL:GQ 1/1:255,78,0:99 chr1 76608491 . T C 33 . DP=20;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,1,8,1;MQ=60;FQ=36;PV4=1,2.5e-08,1,1 GT:PL:GQ 0/1:63,0,182:66 chr1 76771475 . G T 81 . DP=11;VDB=0.0081;AF1=0.5;AC1=1;DP4=5,1,3,1;MQ=60;FQ=84;PV4=1,1,1,0.32 GT:PL:GQ 0/1:111,0,141:99 chr1 76771495 . G C 136 . DP=18;VDB=0.0190;AF1=0.5;AC1=1;DP4=10,1,5,2;MQ=60;FQ=139;PV4=0.53,1,1,1 GT:PL:GQ 0/1:166,0,191:99 chr1 77042405 . G A 60 . DP=25;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,20,0;MQ=60;FQ=-87 GT:PL:GQ 1/1:93,60,0:99 chr1 77042631 . G C 222 . DP=93;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,11,79;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 77093180 . C A 153 . DP=60;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,11,13,13;MQ=60;FQ=156;PV4=0.42,2.5e-19,1,1 GT:PL:GQ 0/1:183,0,255:99 chr1 77334525 . G A 3.54 . DP=8;VDB=0.0174;AF1=0.4998;AC1=1;DP4=1,5,1,1;MQ=60;FQ=5.47;PV4=0.46,0.00043,1,1 GT:PL:GQ 0/1:31,0,153:30 chr1 77558057 . G C 137 . DP=18;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,0,11,0;MQ=60;FQ=82;PV4=1,1,1,1 GT:PL:GQ 0/1:167,0,109:99 chr1 77627096 . G A 107 . DP=19;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,6,11;MQ=60;FQ=-78 GT:PL:GQ 1/1:140,51,0:99 chr1 77634948 . G A 222 . DP=60;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,49,11;MQ=60;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr1 77759380 . C G 3.01 . DP=4;VDB=0.0184;AF1=0.4998;AC1=1;DP4=2,0,2,0;MQ=60;FQ=4.77;PV4=1,0.014,1,0.22 GT:PL:GQ 0/1:30,0,58:28 chr1 77759578 . A G 168 . DP=71;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,19,12,29;MQ=59;FQ=171;PV4=0.61,1.3e-20,1,0.063 GT:PL:GQ 0/1:198,0,255:99 chr1 77763542 . G A 152 . DP=21;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,9,11;MQ=60;FQ=-87 GT:PL:GQ 1/1:185,60,0:99 chr1 78024284 . T C 222 . DP=17;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,13,3;MQ=57;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 78024345 . CTATT CTATTATT 214 . INDEL;DP=21;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,11,10;MQ=55;FQ=-97.5 GT:PL:GQ 1/1:255,63,0:99 chr1 78031994 . A G 113 . DP=7;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:146,18,0:33 chr1 78033981 . aaaATGAAATGAA aAAATGAA 144 . INDEL;DP=4;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:184,12,0:21 chr1 78045369 . G A 20.6 . DP=4;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:53,12,0:21 chr1 78281002 . T C 129 . DP=9;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:162,24,0:45 chr1 78383467 . G A 162 . DP=15;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,14;MQ=60;FQ=-69 GT:PL:GQ 1/1:195,42,0:81 chr1 78392446 . G A 214 . DP=62;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,48,10;MQ=60;FQ=-202 GT:PL:GQ 1/1:247,175,0:99 chr1 78399207 . C G 111 . DP=17;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,1,16;MQ=59;FQ=-78 GT:PL:GQ 1/1:144,51,0:99 chr1 78430689 . AG AGG 214 . INDEL;DP=68;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,47,21;MQ=59;FQ=-240 GT:PL:GQ 1/1:255,205,0:99 chr1 78478675 . G A 90 . DP=18;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,15,2;MQ=60;FQ=-78 GT:PL:GQ 1/1:123,51,0:99 chr1 78481640 . G A 170 . DP=16;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,15,0;MQ=58;FQ=-72 GT:PL:GQ 1/1:203,45,0:87 chr1 78560583 . G A 56 . DP=12;VDB=0.0041;AF1=0.5;AC1=1;DP4=8,0,4,0;MQ=60;FQ=59;PV4=1,1,1,1 GT:PL:GQ 0/1:86,0,145:89 chr1 78578177 . T C 50 . DP=60;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,30,2,15;MQ=58;FQ=53;PV4=0.31,1.1e-14,1,1 GT:PL:GQ 0/1:80,0,255:83 chr1 78585086 . T C 124 . DP=97;VDB=0.0380;AF1=0.5;AC1=1;DP4=41,15,31,8;MQ=60;FQ=127;PV4=0.63,1e-34,0.044,1 GT:PL:GQ 0/1:154,0,255:99 chr1 79094593 . A G 94 . DP=44;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,17,9,10;MQ=59;FQ=97;PV4=0.36,6.2e-18,1,1 GT:PL:GQ 0/1:124,0,255:99 chr1 79106967 . C T 4.77 . DP=5;VDB=0.0199;AF1=0.4999;AC1=1;DP4=0,2,0,3;MQ=60;FQ=6.97;PV4=1,0.00049,1,1 GT:PL:GQ 0/1:33,0,58:33 chr1 79355596 . A G 120 . DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,5,10;MQ=60;FQ=-72 GT:PL:GQ 1/1:153,45,0:87 chr1 79357360 . G C 165 . DP=76;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,19,54;MQ=60;FQ=-247 GT:PL:GQ 1/1:198,220,0:99 chr1 79358827 . G T 122 . DP=28;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,5,10,8;MQ=58;FQ=125;PV4=1,5.6e-08,1,0.28 GT:PL:GQ 0/1:152,0,181:99 chr1 79387242 . C T 157 . DP=14;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:190,39,0:75 chr1 79411968 . C A 112 . DP=49;VDB=0.0244;AF1=0.5;AC1=1;DP4=16,8,20,4;MQ=60;FQ=115;PV4=0.32,5.8e-23,0.16,1 GT:PL:GQ 0/1:142,0,255:99 chr1 79472141 . C A 142 . DP=26;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,21,4;MQ=58;FQ=-102 GT:PL:GQ 1/1:175,75,0:99 chr1 82415814 . T C 222 . DP=26;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,20,5;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 82416220 . G A 39.8 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:71,6,0:10 chr1 82417552 . T G 25.1 . DP=10;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:58,18,0:32 chr1 82421596 . C T 211 . DP=144;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,86,49;MQ=60;FQ=-282 GT:PL:GQ 1/1:244,255,0:99 chr1 82437670 . ATTTGTTTT ATTT 36.5 . INDEL;DP=13;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,7,0,5;MQ=49;FQ=39.5;PV4=1,0.17,0,1 GT:PL:GQ 0/1:74,0,221:77 chr1 82450194 . C A 68 . DP=13;VDB=0.0014;AF1=0.5;AC1=1;DP4=3,0,9,1;MQ=58;FQ=36;PV4=1,3.5e-06,0.3,0.49 GT:PL:GQ 0/1:98,0,63:66 chr1 82450844 . C G 95 . DP=24;VDB=0.0053;AF1=0.5;AC1=1;DP4=11,1,9,3;MQ=58;FQ=98;PV4=0.59,7.1e-12,1,1 GT:PL:GQ 0/1:125,0,189:99 chr1 82453022 . A G 105 . DP=23;VDB=0.0099;AF1=0.5;AC1=1;DP4=10,1,8,4;MQ=59;FQ=108;PV4=0.32,1.1e-12,0.18,1 GT:PL:GQ 0/1:135,0,195:99 chr1 84355734 . AAGAACTTCAAGGATA AA 214 . INDEL;DP=63;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,41;MQ=32;FQ=-186 GT:PL:GQ 1/1:255,151,0:99 chr1 84383079 . G A 41.1 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:74,18,0:33 chr1 84640691 . T G 55.1 . DP=6;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,2,4;MQ=60;FQ=-45 GT:PL:GQ 1/1:88,18,0:33 chr1 84791239 . T C 14.1 . DP=3;VDB=0.0030;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:46,9,0:14 chr1 84810396 . A C 56 . DP=8;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:89,24,0:45 chr1 84810815 . A G 222 . DP=162;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,80,76;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 84853957 . A T 114 . DP=33;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,22,5;MQ=60;FQ=-108 GT:PL:GQ 1/1:147,81,0:99 chr1 84864256 . G C 225 . DP=77;VDB=0.0400;AF1=0.5;AC1=1;DP4=19,25,16,16;MQ=59;FQ=225;PV4=0.64,0.046,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 84867610 . G A 25 . DP=40;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,2,14,2;MQ=59;FQ=28;PV4=1,1.2e-23,0.13,1 GT:PL:GQ 0/1:55,0,242:58 chr1 84874242 . C G 222 . DP=88;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,39,2,41;MQ=60;FQ=223;PV4=0.68,0.45,1,0.22 GT:PL:GQ 0/1:252,0,255:99 chr1 84876711 . C CA 214 . INDEL;DP=59;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,9,50;MQ=60;FQ=-213 GT:PL:GQ 1/1:255,178,0:99 chr1 84876731 . T G 141 . DP=32;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,3,29;MQ=60;FQ=-123 GT:PL:GQ 1/1:174,96,0:99 chr1 84878228 . C T 150 . DP=31;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,15,2,9;MQ=59;FQ=153;PV4=1,0.2,1,1 GT:PL:GQ 0/1:180,0,255:99 chr1 84880380 . T C 225 . DP=117;VDB=0.0400;AF1=0.5;AC1=1;DP4=35,25,33,19;MQ=60;FQ=225;PV4=0.7,0.35,1,0.21 GT:PL:GQ 0/1:255,0,255:99 chr1 84944989 . A G 78 . DP=20;VDB=0.0284;AF1=0.5;AC1=1;DP4=6,5,5,4;MQ=60;FQ=81;PV4=1,2.8e-07,1,0.2 GT:PL:GQ 0/1:108,0,227:99 chr1 84946745 . C T 87 . DP=13;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,4,8;MQ=58;FQ=-63 GT:PL:GQ 1/1:120,36,0:69 chr1 84963000 . A G 177 . DP=17;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,0,8,2;MQ=59;FQ=103;PV4=0.49,0.47,0.21,0.49 GT:PL:GQ 0/1:207,0,130:99 chr1 84991488 . T G 68 . DP=39;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,11,15,5;MQ=60;FQ=71;PV4=0.054,2.4e-22,1,0.47 GT:PL:GQ 0/1:98,0,255:99 chr1 84998445 . C G 15.1 . DP=5;VDB=0.0098;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=16.9;PV4=1,0.0042,1,1 GT:PL:GQ 0/1:45,0,50:47 chr1 84999571 . T C 48 . DP=9;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=50.8;PV4=1,1,1,0.21 GT:PL:GQ 0/1:78,0,91:81 chr1 85009894 . A G 83 . DP=153;VDB=0.0380;AF1=0.5;AC1=1;DP4=44,42,38,24;MQ=60;FQ=86;PV4=0.24,8.7e-54,1,1 GT:PL:GQ 0/1:113,0,255:99 chr1 85031630 . G A 107 . DP=45;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,15,4,17;MQ=60;FQ=110;PV4=0.2,3.5e-17,1,1 GT:PL:GQ 0/1:137,0,255:99 chr1 85036239 . C G 70 . DP=77;VDB=0.0244;AF1=0.5;AC1=1;DP4=37,13,23,3;MQ=60;FQ=73;PV4=0.23,2.8e-31,0.084,1 GT:PL:GQ 0/1:100,0,255:99 chr1 85039828 . G A 172 . DP=62;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,11,20,12;MQ=60;FQ=175;PV4=1,9.2e-16,0.18,1 GT:PL:GQ 0/1:202,0,255:99 chr1 85039955 . G A 145 . DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,15,7,16;MQ=59;FQ=148;PV4=1,1.8e-09,0.082,1 GT:PL:GQ 0/1:175,0,255:99 chr1 85096592 . C T 69 . DP=29;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,11,2,9;MQ=60;FQ=72;PV4=0.42,1.9e-12,1,1 GT:PL:GQ 0/1:99,0,255:99 chr1 85096920 . A G 68 . DP=65;VDB=0.0271;AF1=0.5;AC1=1;DP4=21,8,24,8;MQ=60;FQ=71;PV4=1,1e-31,1,1 GT:PL:GQ 0/1:98,0,255:99 chr1 85097247 . T G 119 . DP=45;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,3,15,7;MQ=60;FQ=122;PV4=0.17,1.7e-18,1,0.4 GT:PL:GQ 0/1:149,0,255:99 chr1 85113203 . T C 222 . DP=104;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,52,51;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 85113229 . A G 225 . DP=90;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,25,10,34;MQ=59;FQ=225;PV4=0.069,1,0.28,1 GT:PL:GQ 0/1:255,0,255:99 chr1 85121255 . A G 126 . DP=50;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,19,4,20;MQ=59;FQ=129;PV4=0.73,5.1e-19,0.073,0.15 GT:PL:GQ 0/1:156,0,255:99 chr1 85128262 . A G 225 . DP=43;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,15,6,14;MQ=60;FQ=225;PV4=1,0.3,1,0.17 GT:PL:GQ 0/1:255,0,255:99 chr1 85128280 . T C 175 . DP=30;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,5,22;MQ=59;FQ=-108 GT:PL:GQ 1/1:208,81,0:99 chr1 85128305 . G C 59 . DP=15;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,9,0,6;MQ=58;FQ=62;PV4=1,0.013,0.12,0.46 GT:PL:GQ 0/1:89,0,155:92 chr1 85131982 . T G 168 . DP=13;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:201,36,0:69 chr1 85331808 . GAGAAG GAGAAGAAG 217 . INDEL;DP=66;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,24,0,28;MQ=57;FQ=217;PV4=0.052,1,0.0017,1 GT:PL:GQ 0/1:255,0,255:99 chr1 85392324 . C T 120 . DP=52;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,19,6,17;MQ=60;FQ=123;PV4=0.56,1.6e-14,1,1 GT:PL:GQ 0/1:150,0,255:99 chr1 85488030 . G A 222 . DP=99;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,31,63;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 85488154 . G C 153 . DP=11;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:186,30,0:57 chr1 85537522 . T C 38.8 . DP=2;VDB=0.0075;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:70,6,0:10 chr1 85547945 . T C 157 . DP=22;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,18,3;MQ=60;FQ=-90 GT:PL:GQ 1/1:190,63,0:99 chr1 85555672 . A C 85.5 . DP=4;VDB=0.0126;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:118,12,0:21 chr1 85559396 . G C 225 . DP=169;VDB=0.0392;AF1=0.5;AC1=1;DP4=37,49,36,42;MQ=60;FQ=225;PV4=0.75,1,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr1 85573705 . a aCT 26.5 . INDEL;DP=10;VDB=0.0008;AF1=0.5;AC1=1;DP4=5,0,5,0;MQ=58;FQ=26.5;PV4=1,1,0.17,0.13 GT:PL:GQ 0/1:64,0,64:64 chr1 85589842 . A G 155 . DP=100;VDB=0.0398;AF1=0.5;AC1=1;DP4=33,23,28,14;MQ=60;FQ=158;PV4=0.53,3.9e-23,1,1 GT:PL:GQ 0/1:185,0,255:99 chr1 85589939 . GTT GT 217 . INDEL;DP=110;VDB=0.0365;AF1=0.5;AC1=1;DP4=25,27,19,32;MQ=60;FQ=217;PV4=0.32,0.00018,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr1 85592126 . G T 141 . DP=8;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,8,0;MQ=57;FQ=-51 GT:PL:GQ 1/1:174,24,0:45 chr1 85594392 . T C 129 . DP=27;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,4,10,5;MQ=59;FQ=132;PV4=1,1.9e-10,0.2,0.087 GT:PL:GQ 0/1:159,0,219:99 chr1 85595645 . C T 119 . DP=65;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,20,14,15;MQ=60;FQ=122;PV4=0.62,9.4e-26,1,1 GT:PL:GQ 0/1:149,0,255:99 chr1 85598527 . TCCCCCCCC TCCCCCCC 9.92 . INDEL;DP=31;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,29,2;MQ=59;FQ=-128 GT:PL:GQ 1/1:50,93,0:69 chr1 85598679 . TAAAAAA TAAAAAAA 35.5 . INDEL;DP=94;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,42,10,20;MQ=59;FQ=38.5;PV4=0.29,1,0.34,0.23 GT:PL:GQ 0/1:73,0,113:76 chr1 85624549 . C T 196 . DP=38;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,26,9;MQ=60;FQ=-132 GT:PL:GQ 1/1:229,105,0:99 chr1 85624864 . G A 195 . DP=88;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,27,57;MQ=60;FQ=-280 GT:PL:GQ 1/1:228,253,0:99 chr1 85647713 . T C 53 . DP=9;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:86,27,0:51 chr1 85648620 . C T 190 . DP=35;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,16,18;MQ=59;FQ=-129 GT:PL:GQ 1/1:223,102,0:99 chr1 85648905 . T C 88 . DP=20;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,11,0,7;MQ=59;FQ=91;PV4=1,1,1,1 GT:PL:GQ 0/1:118,0,147:99 chr1 85655916 . G A 142 . DP=108;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,45,15,28;MQ=60;FQ=145;PV4=0.27,1.6e-29,1,0.11 GT:PL:GQ 0/1:172,0,255:99 chr1 85723318 . A G 56 . DP=11;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,3,1,7;MQ=58;FQ=40;PV4=1,7.6e-06,0.28,1 GT:PL:GQ 0/1:86,0,67:70 chr1 85724283 . C T 76 . DP=57;VDB=0.0271;AF1=0.5;AC1=1;DP4=15,19,6,17;MQ=60;FQ=79;PV4=0.26,1.6e-31,1,1 GT:PL:GQ 0/1:106,0,255:99 chr1 85741921 . G C 221 . DP=34;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,11;MQ=59;FQ=-129 GT:PL:GQ 1/1:254,102,0:99 chr1 85742023 . C A 225 . DP=42;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,14,9,11;MQ=59;FQ=225;PV4=0.51,0.088,1,0.044 GT:PL:GQ 0/1:255,0,255:99 chr1 85787114 . A T 70 . DP=13;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:103,36,0:69 chr1 85787334 . C T 99 . DP=17;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,7,0,7;MQ=60;FQ=102;PV4=0.23,1,1,0.23 GT:PL:GQ 0/1:129,0,212:99 chr1 85790633 . G A 25 . DP=8;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=60;FQ=28;PV4=1,0.00014,1,0.38 GT:PL:GQ 0/1:55,0,82:58 chr1 85816134 . T C 133 . DP=57;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,9,19,6;MQ=59;FQ=136;PV4=0.56,2.3e-13,1,1 GT:PL:GQ 0/1:163,0,255:99 chr1 85817295 . G A 136 . DP=97;VDB=0.0398;AF1=0.5;AC1=1;DP4=18,33,8,36;MQ=60;FQ=139;PV4=0.07,2.3e-36,1,0.096 GT:PL:GQ 0/1:166,0,255:99 chr1 86046561 . C A 24 . DP=4;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:56,9,0:15 chr1 86046924 . G A 48.1 . DP=6;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:81,18,0:33 chr1 86119898 . A G 106 . DP=12;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,5,1,5;MQ=60;FQ=105;PV4=1,1,1,1 GT:PL:GQ 0/1:136,0,134:99 chr1 86167957 . C T 37 . DP=14;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,6,0,6;MQ=60;FQ=40;PV4=0.47,1.2e-06,1,1 GT:PL:GQ 0/1:67,0,184:70 chr1 86173298 . C T 19.1 . DP=103;VDB=0.0322;AF1=0.5;AC1=1;DP4=40,14,21,6;MQ=59;FQ=22;PV4=0.79,1.1e-36,0.31,0.035 GT:PL:GQ 0/1:49,0,255:52 chr1 86202016 . C T 225 . DP=112;VDB=0.0345;AF1=0.5;AC1=1;DP4=41,24,27,16;MQ=60;FQ=225;PV4=1,1,0.38,0.15 GT:PL:GQ 0/1:255,0,255:99 chr1 86210546 . G A 36 . DP=26;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,15,0,10;MQ=59;FQ=39;PV4=1,1.5e-14,0.11,0.44 GT:PL:GQ 0/1:66,0,182:69 chr1 86246849 . A C 14.2 . DP=6;VDB=0.0236;AF1=0.5;AC1=1;DP4=1,1,4,0;MQ=60;FQ=16.6;PV4=0.33,4.7e-05,1,1 GT:PL:GQ 0/1:44,0,53:46 chr1 86249063 . C T 67 . DP=27;VDB=0.0053;AF1=0.5;AC1=1;DP4=13,0,12,1;MQ=59;FQ=70;PV4=1,3.7e-11,1,0.4 GT:PL:GQ 0/1:97,0,166:99 chr1 86249911 . A G 134 . DP=93;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,27,16,32;MQ=60;FQ=137;PV4=0.83,2.3e-41,1,0.45 GT:PL:GQ 0/1:164,0,255:99 chr1 86252025 . A G 39 . DP=26;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,9,6,3;MQ=60;FQ=42;PV4=0.43,4.5e-13,1,1 GT:PL:GQ 0/1:69,0,255:72 chr1 86340880 . A G 225 . DP=61;VDB=0.0244;AF1=0.5;AC1=1;DP4=21,9,19,12;MQ=60;FQ=225;PV4=0.59,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 86341153 . G A 5.46 . DP=5;VDB=0.0127;AF1=0.4999;AC1=1;DP4=0,3,1,1;MQ=60;FQ=7.8;PV4=0.4,0.022,1,0.47 GT:PL:GQ 0/1:34,0,79:34 chr1 86361802 . C G 17.1 . DP=7;VDB=0.0124;AF1=0.5;AC1=1;DP4=0,5,0,2;MQ=60;FQ=20.1;PV4=1,0.05,1,0.16 GT:PL:GQ 0/1:47,0,124:50 chr1 86375654 . C G 125 . DP=91;VDB=0.0400;AF1=0.5;AC1=1;DP4=19,22,28,20;MQ=60;FQ=128;PV4=0.29,1.7e-45,1,0.0051 GT:PL:GQ 0/1:155,0,255:99 chr1 86453237 . T G 132 . DP=28;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,7,6,3;MQ=59;FQ=135;PV4=1,0.19,1,0.21 GT:PL:GQ 0/1:162,0,255:99 chr1 86482922 . A T 70 . DP=30;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,10,5,11;MQ=60;FQ=73;PV4=0.7,2.9e-16,1,0.25 GT:PL:GQ 0/1:100,0,228:99 chr1 86487914 . C A 91 . DP=66;VDB=0.0244;AF1=0.5;AC1=1;DP4=18,16,14,17;MQ=56;FQ=94;PV4=0.62,7.7e-32,0.44,1 GT:PL:GQ 0/1:121,0,255:99 chr1 86487981 . G A 88 . DP=36;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,2,33;MQ=52;FQ=-132 GT:PL:GQ 1/1:121,105,0:99 chr1 86487992 . AACAGA AACAGACAGA 214 . INDEL;DP=30;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,23;MQ=53;FQ=-107 GT:PL:GQ 1/1:255,72,0:99 chr1 86488232 . G A 3.54 . DP=38;VDB=0.0380;AF1=0.4998;AC1=1;DP4=22,6,7,2;MQ=60;FQ=5.47;PV4=1,8.7e-16,1,1 GT:PL:GQ 0/1:31,0,255:30 chr1 86512433 . C T 110 . DP=16;VDB=0.0118;AF1=0.5;AC1=1;DP4=8,0,8,0;MQ=56;FQ=110;PV4=1,0.26,1,1 GT:PL:GQ 0/1:140,0,141:99 chr1 86524903 . C T 126 . DP=26;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,16,1,9;MQ=58;FQ=129;PV4=0.38,0.015,0.37,1 GT:PL:GQ 0/1:156,0,181:99 chr1 86529390 . G A 136 . DP=55;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,5,21,13;MQ=60;FQ=139;PV4=0.38,2.7e-25,1,0.17 GT:PL:GQ 0/1:166,0,255:99 chr1 86557967 . G A 107 . DP=9;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,8,1;MQ=57;FQ=-54 GT:PL:GQ 1/1:140,27,0:51 chr1 86590915 . G A 222 . DP=96;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,61,32;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 86591837 . G A 222 . DP=68;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,53;MQ=59;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr1 86621992 . C A 77 . DP=22;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,17,2;MQ=59;FQ=-84 GT:PL:GQ 1/1:110,57,0:99 chr1 86818572 . T C 210 . DP=51;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,20;MQ=60;FQ=-168 GT:PL:GQ 1/1:243,141,0:99 chr1 86820267 . C T 222 . DP=79;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,45,26;MQ=60;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr1 86822231 . A G 85 . DP=31;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,10,8,9;MQ=60;FQ=88;PV4=0.46,2.4e-15,1,0.35 GT:PL:GQ 0/1:115,0,241:99 chr1 86838158 . C T 21 . DP=3;VDB=0.0170;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:53,9,0:15 chr1 86847955 . G A 45 . DP=12;VDB=0.0393;AF1=0.5;AC1=1;DP4=5,0,7,0;MQ=60;FQ=48;PV4=1,0.00033,1,0.17 GT:PL:GQ 0/1:75,0,101:78 chr1 86852621 . A G 161 . DP=17;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,2,7,2;MQ=60;FQ=141;PV4=1,1,1,0.48 GT:PL:GQ 0/1:191,0,168:99 chr1 86896541 . G A 225 . DP=70;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,18,18,14;MQ=59;FQ=225;PV4=0.63,0.36,1,0.39 GT:PL:GQ 0/1:255,0,255:99 chr1 86904930 . T C 10.4 . DP=8;VDB=0.0001;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=13;PV4=1,0.0014,1,1 GT:PL:GQ 0/1:40,0,53:42 chr1 86906055 . T C 3.01 . DP=7;VDB=0.0133;AF1=0.4997;AC1=1;DP4=0,4,0,3;MQ=57;FQ=4.77;PV4=1,6.5e-05,1,0.26 GT:PL:GQ 0/1:30,0,92:28 chr1 86919011 . G A 122 . DP=10;VDB=0.0393;AF1=0.5;AC1=1;DP4=1,1,5,1;MQ=60;FQ=17.1;PV4=0.46,1,1,1 GT:PL:GQ 0/1:152,0,44:47 chr1 86939130 . C T 177 . DP=29;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,10;MQ=60;FQ=-114 GT:PL:GQ 1/1:210,87,0:99 chr1 86939390 . G A 88 . DP=44;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,39,3;MQ=60;FQ=-153 GT:PL:GQ 1/1:121,126,0:99 chr1 86952324 . A G 165 . DP=50;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,33,13;MQ=60;FQ=-165 GT:PL:GQ 1/1:198,138,0:99 chr1 86954700 . A G 168 . DP=73;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,22,18,20;MQ=60;FQ=171;PV4=0.34,7.9e-20,1,0.35 GT:PL:GQ 0/1:198,0,255:99 chr1 86954880 . G A 33 . DP=9;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,4,0,5;MQ=60;FQ=36;PV4=1,0.00066,1,1 GT:PL:GQ 0/1:63,0,93:66 chr1 86956785 . C G 120 . DP=7;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:153,18,0:33 chr1 86959173 . T C 225 . DP=50;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,9,20,4;MQ=59;FQ=225;PV4=0.2,0.25,1,0.17 GT:PL:GQ 0/1:255,0,255:99 chr1 86959748 . A T 108 . DP=12;VDB=0.0011;AF1=0.5;AC1=1;DP4=5,0,7,0;MQ=60;FQ=73;PV4=1,1,1,1 GT:PL:GQ 0/1:138,0,100:99 chr1 86959796 . C T 40 . DP=37;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,2,14,0;MQ=60;FQ=43;PV4=0.5,2.7e-17,1,1 GT:PL:GQ 0/1:70,0,243:73 chr1 86961210 . C T 225 . DP=40;VDB=0.0271;AF1=0.5;AC1=1;DP4=12,3,19,5;MQ=59;FQ=193;PV4=1,1,1,0.47 GT:PL:GQ 0/1:255,0,220:99 chr1 86965419 . T C 146 . DP=63;VDB=0.0271;AF1=0.5;AC1=1;DP4=22,9,24,8;MQ=60;FQ=149;PV4=0.78,1.8e-31,1,0.34 GT:PL:GQ 0/1:176,0,255:99 chr1 87012728 . C A 45 . DP=28;VDB=0.0033;AF1=0.5;AC1=1;DP4=12,4,11,1;MQ=59;FQ=48;PV4=0.36,4.6e-17,0.13,0.27 GT:PL:GQ 0/1:75,0,255:78 chr1 87036746 . C A 222 . DP=89;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,61,25;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 87045896 . tcctacacctac tcctac 214 . INDEL;DP=115;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,32,28;MQ=33;FQ=-216 GT:PL:GQ 1/1:255,181,0:99 chr1 87458695 . G A 126 . DP=25;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,18,4;MQ=60;FQ=-93 GT:PL:GQ 1/1:159,66,0:99 chr1 87538182 . TTGTGTGT TTGTGT 214 . INDEL;DP=36;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,26,9;MQ=59;FQ=-140 GT:PL:GQ 1/1:255,105,0:99 chr1 87538200 . G A 210 . DP=43;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,29,14;MQ=59;FQ=-156 GT:PL:GQ 1/1:243,129,0:99 chr1 87549858 . A G 141 . DP=24;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,19,2;MQ=60;FQ=-90 GT:PL:GQ 1/1:174,63,0:99 chr1 87563668 . G A 222 . DP=18;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,4,13;MQ=59;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr1 87570398 . G A 222 . DP=70;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,51;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr1 87598117 . T G 189 . DP=14;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,9,2;MQ=60;FQ=-60 GT:PL:GQ 1/1:222,33,0:63 chr1 87599697 . G A 222 . DP=86;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,65;MQ=60;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr1 87633761 . C T 108 . DP=6;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:141,18,0:33 chr1 89225976 . T C 120 . DP=21;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,11,9;MQ=60;FQ=-87 GT:PL:GQ 1/1:153,60,0:99 chr1 89236274 . tc t 13.7 . INDEL;DP=5;VDB=0.0118;AF1=0.5002;AC1=1;DP4=0,2,0,3;MQ=60;FQ=-5.15;PV4=1,1,1,1 GT:PL:GQ 0/1:51,0,31:34 chr1 89237556 . C T 61 . DP=30;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,12,0,15;MQ=59;FQ=64;PV4=0.46,5.4e-15,1,1 GT:PL:GQ 0/1:91,0,197:94 chr1 89246897 . C T 129 . DP=62;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,13,18,13;MQ=60;FQ=132;PV4=1,1.7e-27,1,0.28 GT:PL:GQ 0/1:159,0,255:99 chr1 89271574 . T C 225 . DP=48;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,9,16,8;MQ=59;FQ=225;PV4=0.55,0.39,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 89272962 . T G 31 . DP=10;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,0,5,0;MQ=60;FQ=34;PV4=1,1.1e-05,1,0.25 GT:PL:GQ 0/1:61,0,116:64 chr1 89273152 . G T 225 . DP=37;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,7,9,9;MQ=59;FQ=225;PV4=0.74,0.11,1,0.29 GT:PL:GQ 0/1:255,0,255:99 chr1 89273287 . G A 5.46 . DP=25;VDB=0.0359;AF1=0.4999;AC1=1;DP4=4,13,3,4;MQ=59;FQ=7.8;PV4=0.37,4.7e-11,1,0.33 GT:PL:GQ 0/1:34,0,255:34 chr1 89280965 . A G 12.3 . DP=16;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,1,5,0;MQ=60;FQ=15.1;PV4=1,4.4e-10,1,1 GT:PL:GQ 0/1:42,0,193:44 chr1 89294616 . G A 59 . DP=122;VDB=0.0298;AF1=0.5;AC1=1;DP4=41,17,24,15;MQ=59;FQ=62;PV4=0.38,3.9e-51,0.17,0.49 GT:PL:GQ 0/1:89,0,255:92 chr1 89294713 . C T 177 . DP=106;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,35,15,37;MQ=60;FQ=180;PV4=0.83,4.2e-29,1,0.15 GT:PL:GQ 0/1:207,0,255:99 chr1 89298290 . attgttgttgttgttgttgttgttgtt aTTGttgttgttgttgttgttgttgttgtt 122 . INDEL;DP=10;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,2,4,0;MQ=60;FQ=125;PV4=0.47,1,1,1 GT:PL:GQ 0/1:160,0,234:99 chr1 89319082 . C T 30 . DP=10;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,5,0,5;MQ=60;FQ=33;PV4=1,1.4e-06,1,0.26 GT:PL:GQ 0/1:60,0,108:63 chr1 89322982 . G A 222 . DP=78;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,46,26;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr1 89418578 . C T 3.54 . DP=3;VDB=0.0129;AF1=0.5002;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-3.4;PV4=1,0.018,1,1 GT:PL:GQ 0/1:31,0,28:29 chr1 89420825 . A C 162 . DP=57;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,6,24,9;MQ=60;FQ=165;PV4=1,1.4e-18,1,0.43 GT:PL:GQ 0/1:192,0,255:99 chr1 89426813 . C T 115 . DP=28;VDB=0.0373;AF1=0.5;AC1=1;DP4=14,2,11,0;MQ=59;FQ=118;PV4=0.5,0.071,1,0.15 GT:PL:GQ 0/1:145,0,233:99 chr1 89426956 . C T 111 . DP=124;VDB=0.0392;AF1=0.5;AC1=1;DP4=36,25,41,19;MQ=60;FQ=114;PV4=0.35,1.6e-59,1,1 GT:PL:GQ 0/1:141,0,255:99 chr1 89454063 . G C 66 . DP=17;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,5,1,8;MQ=60;FQ=69;PV4=0.55,8.4e-11,1,0.36 GT:PL:GQ 0/1:96,0,171:99 chr1 89475230 . T G 76 . DP=42;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,16,3,18;MQ=57;FQ=79;PV4=0.7,2.5e-17,0.056,1 GT:PL:GQ 0/1:106,0,255:99 chr1 89520574 . C A 101 . DP=67;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,28,3,25;MQ=58;FQ=104;PV4=1,2.4e-23,1,1 GT:PL:GQ 0/1:131,0,255:99 chr1 89520636 . G A 36 . DP=14;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,7,0,5;MQ=60;FQ=39;PV4=1,0.004,1,0.29 GT:PL:GQ 0/1:66,0,134:69 chr1 89521841 . G C 122 . DP=73;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,31,5,31;MQ=47;FQ=125;PV4=1,7.7e-28,0.35,1 GT:PL:GQ 0/1:152,0,248:99 chr1 89522646 . G C 88 . DP=31;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,8,2,17;MQ=60;FQ=91;PV4=0.33,9.6e-14,1,0.015 GT:PL:GQ 0/1:118,0,214:99 chr1 89574026 . G A 33 . DP=24;VDB=0.0042;AF1=0.5;AC1=1;DP4=5,10,0,9;MQ=60;FQ=36;PV4=0.12,1.5e-07,1,1 GT:PL:GQ 0/1:63,0,255:66 chr1 89579681 . G A 225 . DP=155;VDB=0.0399;AF1=0.5;AC1=1;DP4=49,45,32,27;MQ=60;FQ=225;PV4=0.87,0.11,1,0.15 GT:PL:GQ 0/1:255,0,255:99 chr1 89579941 . T C 145 . DP=72;VDB=0.0244;AF1=0.5;AC1=1;DP4=20,21,16,14;MQ=59;FQ=148;PV4=0.81,8.3e-26,1,1 GT:PL:GQ 0/1:175,0,255:99 chr1 89582690 . G C 147 . DP=57;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,7,18,10;MQ=59;FQ=150;PV4=0.39,3.3e-18,0.49,0.39 GT:PL:GQ 0/1:177,0,255:99 chr1 89582702 . A G 94 . DP=68;VDB=0.0400;AF1=0.5;AC1=1;DP4=21,12,24,10;MQ=59;FQ=97;PV4=0.61,1e-29,0.081,1 GT:PL:GQ 0/1:124,0,255:99 chr1 89607479 . G T 147 . DP=24;VDB=0.0025;AF1=0.5;AC1=1;DP4=2,11,1,10;MQ=60;FQ=150;PV4=1,0.13,1,0.26 GT:PL:GQ 0/1:177,0,225:99 chr1 89607486 . T C 105 . DP=22;VDB=0.0014;AF1=0.5;AC1=1;DP4=2,11,0,8;MQ=60;FQ=108;PV4=0.5,1,1,1 GT:PL:GQ 0/1:135,0,222:99 chr1 89615979 . C T 8.44 . DP=2;VDB=0.0157;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr1 89618471 . AG A 9.04 . INDEL;DP=20;VDB=0.0384;AF1=0.5;AC1=1;DP4=11,0,0,4;MQ=58;FQ=11.8;PV4=0.00073,0.05,0.049,1 GT:PL:GQ 0/1:46,0,152:48 chr1 89637578 . G A 167 . DP=81;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,28,18,19;MQ=59;FQ=170;PV4=0.18,2e-23,0.46,0.051 GT:PL:GQ 0/1:197,0,255:99 chr1 89652846 . G A 112 . DP=69;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,20,11,23;MQ=60;FQ=115;PV4=0.46,3.4e-29,0.16,0.45 GT:PL:GQ 0/1:142,0,255:99 chr1 89661228 . T G 68 . DP=6;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=60;FQ=25;PV4=1,0.42,1,1 GT:PL:GQ 0/1:98,0,52:55 chr1 89726592 . G A 54 . DP=14;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,6,0,8;MQ=60;FQ=57;PV4=1,2.5e-07,1,0.033 GT:PL:GQ 0/1:84,0,125:87 chr1 89730723 . C T 225 . DP=56;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,25,6,20;MQ=60;FQ=225;PV4=0.49,0.34,1,0.11 GT:PL:GQ 0/1:255,0,255:99 chr1 89733273 . T C 181 . DP=25;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,10,2,10;MQ=60;FQ=184;PV4=1,0.19,1,0.25 GT:PL:GQ 0/1:211,0,245:99 chr1 89845926 . GTTTTTTTTT GTTTTTTTT 18.5 . INDEL;DP=68;VDB=0.0244;AF1=1;AC1=2;DP4=1,1,52,11;MQ=60;FQ=-197;PV4=0.34,0.0003,1,0.43 GT:PL:GQ 1/1:59,162,0:96 chr1 89846291 . C T 50 . DP=7;VDB=0.0040;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=52.9;PV4=1,1,1,1 GT:PL:GQ 0/1:80,0,96:83 chr1 89847372 . G T 222 . DP=59;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,28,30;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 89847411 . C T 222 . DP=51;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,30,20;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 89847444 . A G 222 . DP=45;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,23,19;MQ=60;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 89849201 . C G 146 . DP=16;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,13,3;MQ=60;FQ=-75 GT:PL:GQ 1/1:179,48,0:93 chr1 89849350 . G A 222 . DP=14;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,3,10;MQ=60;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr1 89849441 . T G 66.3 . DP=5;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:99,15,0:27 chr1 89849574 . G A 33 . DP=8;VDB=0.0025;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=60;FQ=35.2;PV4=1,0.00098,1,1 GT:PL:GQ 0/1:63,0,70:65 chr1 89849742 . A T 222 . DP=32;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,13,16;MQ=59;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 89885854 . G A 163 . DP=19;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,4,15;MQ=58;FQ=-84 GT:PL:GQ 1/1:196,57,0:99 chr1 89888530 . C T 163 . DP=50;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,45,4;MQ=45;FQ=-175 GT:PL:GQ 1/1:196,148,0:99 chr1 89888552 . T A 222 . DP=82;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,69,12;MQ=50;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr1 89888585 . C G 25.5 . DP=111;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,4,0;MQ=49;FQ=-39 GT:PL:GQ 1/1:58,12,0:21 chr1 90058222 . T C 82 . DP=9;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=57;FQ=54;PV4=1,0.0067,0.24,0.13 GT:PL:GQ 0/1:112,0,81:84 chr1 90171835 . C T 108 . DP=43;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,40,2;MQ=59;FQ=-153 GT:PL:GQ 1/1:141,126,0:99 chr1 90178743 . A G 222 . DP=95;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,42,51;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 90179532 . A G 222 . DP=129;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,43,80;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 90475877 . G A 3.01 . DP=21;VDB=0.0066;AF1=0.4997;AC1=1;DP4=1,13,0,6;MQ=60;FQ=4.77;PV4=1,2.6e-15,1,0.04 GT:PL:GQ 0/1:30,0,217:28 chr1 90486412 . T G 46 . DP=36;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,11,4,8;MQ=59;FQ=49;PV4=0.48,6.8e-12,0.32,1 GT:PL:GQ 0/1:76,0,255:79 chr1 90493026 . G A 89 . DP=88;VDB=0.0384;AF1=0.5;AC1=1;DP4=16,31,7,24;MQ=59;FQ=92;PV4=0.32,4.2e-32,0.17,1 GT:PL:GQ 0/1:119,0,255:99 chr1 91404256 . C A 225 . DP=32;VDB=0.0373;AF1=0.5;AC1=1;DP4=8,8,9,6;MQ=60;FQ=225;PV4=0.72,0.35,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 91447985 . C T 174 . DP=24;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,18;MQ=60;FQ=-96 GT:PL:GQ 1/1:207,69,0:99 chr1 91728053 . G A 222 . DP=30;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,14,15;MQ=59;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 91728202 . T C 67.1 . DP=7;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:100,21,0:39 chr1 91739208 . C T 67 . DP=9;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:100,24,0:45 chr1 91739414 . G A 20.1 . DP=7;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:53,21,0:35 chr1 91781413 . T G 225 . DP=30;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,2,9,8;MQ=60;FQ=192;PV4=0.12,0.069,1,0.27 GT:PL:GQ 0/1:255,0,219:99 chr1 91781644 . C G 123 . DP=12;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,2,3,3;MQ=60;FQ=103;PV4=1,0.43,1,1 GT:PL:GQ 0/1:153,0,130:99 chr1 91782031 . T C 225 . DP=29;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,7,4,16;MQ=60;FQ=135;PV4=1,0.28,1,1 GT:PL:GQ 0/1:255,0,162:99 chr1 91784887 . G A 167 . DP=69;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,15,20,15;MQ=60;FQ=170;PV4=0.81,5.6e-15,1,0.34 GT:PL:GQ 0/1:197,0,255:99 chr1 91793877 . T C 24 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:56,9,0:15 chr1 91813184 . C T 117 . DP=6;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:150,18,0:33 chr1 91841301 . T C 222 . DP=30;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,4,24;MQ=60;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 91846374 . C A 88.1 . DP=7;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,3;MQ=60;FQ=-48 GT:PL:GQ 1/1:121,21,0:39 chr1 91846595 . TA TAA 34.2 . INDEL;DP=2;VDB=0.0159;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:73,6,0:10 chr1 91851253 . T C 136 . DP=38;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,19,16;MQ=60;FQ=-132 GT:PL:GQ 1/1:169,105,0:99 chr1 91859795 . T C 222 . DP=51;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,26,22;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 91859801 . A G 139 . DP=50;VDB=0.0216;AF1=0.5;AC1=1;DP4=13,14,10,13;MQ=60;FQ=142;PV4=0.78,2.6e-19,1,1 GT:PL:GQ 0/1:169,0,255:99 chr1 91870410 . G C 173 . DP=65;VDB=0.0271;AF1=0.5;AC1=1;DP4=18,14,22,9;MQ=60;FQ=176;PV4=0.3,9.8e-11,1,1 GT:PL:GQ 0/1:203,0,255:99 chr1 91870626 . C T 6.2 . DP=7;VDB=0.0060;AF1=0.4999;AC1=1;DP4=0,4,0,3;MQ=60;FQ=8.65;PV4=1,0.00017,1,0.25 GT:PL:GQ 0/1:35,0,102:36 chr1 91973557 . T G 80 . DP=28;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,3,24;MQ=60;FQ=-108 GT:PL:GQ 1/1:113,81,0:99 chr1 91980447 . A G 181 . DP=163;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,87,61;MQ=59;FQ=-282;PV4=0.42,3.9e-10,0.42,0.25 GT:PL:GQ 1/1:214,255,0:99 chr1 91980649 . G A 62 . DP=29;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,14,0,15;MQ=60;FQ=65;PV4=1,1.2e-14,1,0.48 GT:PL:GQ 0/1:92,0,170:95 chr1 91989572 . T G 52 . DP=28;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,27,0;MQ=60;FQ=-108 GT:PL:GQ 1/1:85,81,0:99 chr1 92108899 . C T 146 . DP=150;VDB=0.0380;AF1=0.5;AC1=1;DP4=31,36,34,43;MQ=60;FQ=149;PV4=0.87,9.8e-58,1,0.41 GT:PL:GQ 0/1:176,0,255:99 chr1 92174260 . A G 213 . DP=57;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,45;MQ=60;FQ=-193 GT:PL:GQ 1/1:246,166,0:99 chr1 92184814 . G T 136 . DP=63;VDB=0.0400;AF1=0.5;AC1=1;DP4=20,7,25,8;MQ=60;FQ=139;PV4=1,3.5e-18,1,1 GT:PL:GQ 0/1:166,0,255:99 chr1 92185657 . C T 222 . DP=21;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,5,14;MQ=59;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr1 92195601 . G A 29 . DP=6;VDB=0.0143;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=60;FQ=27.3;PV4=1,0.0019,1,0.36 GT:PL:GQ 0/1:59,0,56:57 chr1 92200593 . A G 124 . DP=48;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,43;MQ=59;FQ=-162 GT:PL:GQ 1/1:157,135,0:99 chr1 92200627 . T C 48 . DP=19;VDB=0.0066;AF1=1;AC1=2;DP4=0,1,0,18;MQ=59;FQ=-50;PV4=1,0.00025,0.41,0.22 GT:PL:GQ 1/1:81,23,0:43 chr1 92224067 . C T 206 . DP=35;VDB=0.0190;AF1=0.5;AC1=1;DP4=14,0,18,3;MQ=60;FQ=138;PV4=0.26,0.0027,1,0.21 GT:PL:GQ 0/1:236,0,165:99 chr1 92224347 . G A 70 . DP=16;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,6,0,9;MQ=59;FQ=73;PV4=0.44,9.4e-07,0.2,0.49 GT:PL:GQ 0/1:100,0,154:99 chr1 92262874 . T C 35 . DP=20;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,3,9,0;MQ=60;FQ=38;PV4=0.22,1.1e-06,1,1 GT:PL:GQ 0/1:65,0,210:68 chr1 92428495 . C A 200 . DP=59;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,14,43;MQ=60;FQ=-199 GT:PL:GQ 1/1:233,172,0:99 chr1 92446112 . T C 25 . DP=3;VDB=0.0189;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:57,9,0:15 chr1 92446398 . T A 129 . DP=34;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,23,7;MQ=60;FQ=-117 GT:PL:GQ 1/1:162,90,0:99 chr1 92447004 . A G 77 . DP=3;VDB=0.0098;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:109,9,0:16 chr1 92457843 . C T 143 . DP=11;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,8,3;MQ=60;FQ=-60 GT:PL:GQ 1/1:176,33,0:63 chr1 92568263 . A G 61 . DP=14;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:94,36,0:69 chr1 92646021 . G A 127 . DP=48;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,11,31;MQ=60;FQ=-153 GT:PL:GQ 1/1:160,126,0:99 chr1 92647223 . A G 219 . DP=52;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,39,13;MQ=60;FQ=-184 GT:PL:GQ 1/1:252,157,0:99 chr1 92647532 . C A 189 . DP=45;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,25,19;MQ=59;FQ=-159 GT:PL:GQ 1/1:222,132,0:99 chr1 92711067 . A T 43 . DP=23;VDB=0.0244;AF1=1;AC1=2;DP4=1,0,19,2;MQ=59;FQ=-65;PV4=1,1e-07,1,0.27 GT:PL:GQ 1/1:76,38,0:72 chr1 92712266 . C T 222 . DP=23;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,9,13;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 92712598 . gaaaa gaa 214 . INDEL;DP=69;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,36,28;MQ=60;FQ=-228 GT:PL:GQ 1/1:255,193,0:99 chr1 92735359 . T C 174 . DP=17;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-63 GT:PL:GQ 1/1:207,36,0:69 chr1 92764828 . T A 124 . DP=11;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,6;MQ=57;FQ=-54 GT:PL:GQ 1/1:157,27,0:51 chr1 92765848 . A T 190 . DP=22;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,14;MQ=59;FQ=-90 GT:PL:GQ 1/1:223,63,0:99 chr1 92852504 . A G 124 . DP=5;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:157,15,0:27 chr1 92946479 . G A 167 . DP=11;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,2;MQ=60;FQ=-60 GT:PL:GQ 1/1:200,33,0:63 chr1 92979354 . A G 222 . DP=77;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,36,35;MQ=60;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr1 93029453 . A G 25 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:57,9,0:15 chr1 93071048 . G T 118 . DP=40;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,3,33;MQ=60;FQ=-135 GT:PL:GQ 1/1:151,108,0:99 chr1 93089823 . T C 164 . DP=22;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,9,12;MQ=60;FQ=-90 GT:PL:GQ 1/1:197,63,0:99 chr1 93128854 . A G 109 . DP=14;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,11,3;MQ=60;FQ=-69 GT:PL:GQ 1/1:142,42,0:81 chr1 93160902 . T C 222 . DP=64;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,18,45;MQ=60;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr1 93163385 . A G 184 . DP=23;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,5;MQ=60;FQ=-93 GT:PL:GQ 1/1:217,66,0:99 chr1 93167854 . A G 206 . DP=32;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,8,24;MQ=60;FQ=-123 GT:PL:GQ 1/1:239,96,0:99 chr1 93306317 . G A 206 . DP=71;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,30,39;MQ=60;FQ=-235 GT:PL:GQ 1/1:239,208,0:99 chr1 93426866 . T C 46 . DP=6;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,2,1;MQ=52;FQ=-36 GT:PL:GQ 1/1:78,9,0:16 chr1 93426869 . G C 5.29 . DP=6;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:35,6,0:6 chr1 93545157 . G A 43 . DP=48;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,20,2,17;MQ=60;FQ=46;PV4=0.27,8.2e-20,1,0.33 GT:PL:GQ 0/1:73,0,255:76 chr1 93580581 . G C 197 . DP=29;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,17,9;MQ=60;FQ=-105 GT:PL:GQ 1/1:230,78,0:99 chr1 93580992 . C T 62 . DP=51;VDB=0.0216;AF1=0.5;AC1=1;DP4=21,3,21,5;MQ=60;FQ=65;PV4=0.7,5.7e-30,1,1 GT:PL:GQ 0/1:92,0,255:95 chr1 93581024 . T C 225 . DP=87;VDB=0.0345;AF1=0.5;AC1=1;DP4=33,6,36,11;MQ=60;FQ=225;PV4=0.42,1,1,0.092 GT:PL:GQ 0/1:255,0,255:99 chr1 93602194 . C T 217 . DP=56;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,37,15;MQ=60;FQ=-184 GT:PL:GQ 1/1:250,157,0:99 chr1 93620393 . G A 167 . DP=126;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,49,17,45;MQ=59;FQ=170;PV4=0.4,2e-52,0.29,1 GT:PL:GQ 0/1:197,0,255:99 chr1 93646207 . T C 101 . DP=36;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,13,7,8;MQ=59;FQ=104;PV4=0.48,3.6e-08,0.13,0.23 GT:PL:GQ 0/1:131,0,255:99 chr1 93649111 . G A 152 . DP=20;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,8,1,10;MQ=60;FQ=113;PV4=1,0.024,1,1 GT:PL:GQ 0/1:182,0,140:99 chr1 93649732 . A G 29 . DP=27;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,7,0,16;MQ=60;FQ=32;PV4=1,3.4e-18,1,0.35 GT:PL:GQ 0/1:59,0,125:62 chr1 93672688 . C T 69 . DP=12;VDB=0.0033;AF1=0.5;AC1=1;DP4=6,1,5,0;MQ=60;FQ=72;PV4=1,0.18,1,0.24 GT:PL:GQ 0/1:99,0,161:99 chr1 93672723 . A C 84 . DP=15;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,12,3;MQ=58;FQ=-72 GT:PL:GQ 1/1:117,45,0:87 chr1 93676314 . A G 71 . DP=8;VDB=0.0126;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=72.6;PV4=1,0.06,1,1 GT:PL:GQ 0/1:101,0,105:99 chr1 93676578 . A G 3.01 . DP=4;VDB=0.0188;AF1=0.4998;AC1=1;DP4=1,1,0,2;MQ=60;FQ=4.77;PV4=1,0.061,1,1 GT:PL:GQ 0/1:30,0,60:28 chr1 93683210 . A G 6.2 . DP=5;VDB=0.0224;AF1=0.4999;AC1=1;DP4=2,0,2,0;MQ=60;FQ=8.63;PV4=1,0.072,1,0.21 GT:PL:GQ 0/1:35,0,58:36 chr1 93711782 . T A 62 . DP=50;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,17,5,18;MQ=60;FQ=65;PV4=0.74,2.5e-25,1,1 GT:PL:GQ 0/1:92,0,255:95 chr1 93712465 . G C 25 . DP=10;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,3,2,2;MQ=60;FQ=28;PV4=1,0.0002,1,1 GT:PL:GQ 0/1:55,0,138:58 chr1 93720070 . C G 47 . DP=22;VDB=0.0053;AF1=0.5;AC1=1;DP4=12,0,10,0;MQ=60;FQ=50;PV4=1,4e-10,1,0.064 GT:PL:GQ 0/1:77,0,169:80 chr1 93826178 . A T 88 . DP=44;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,21,2,15;MQ=60;FQ=91;PV4=1,2.6e-12,1,1 GT:PL:GQ 0/1:118,0,242:99 chr1 93998640 . ATT AT 188 . INDEL;DP=25;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,11,4,8;MQ=60;FQ=166;PV4=0.32,0.35,1,0.24 GT:PL:GQ 0/1:226,0,201:99 chr1 94009830 . C T 77 . DP=5;VDB=0.0095;AF1=0.501;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-4.75;PV4=1,1,1,1 GT:PL:GQ 0/1:107,0,24:27 chr1 94012287 . G A 35.8 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:67,6,0:10 chr1 94041787 . GACAC GACACAC 176 . INDEL;DP=19;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,9,0,7;MQ=60;FQ=167;PV4=1,1,1,0.056 GT:PL:GQ 0/1:214,0,202:99 chr1 94312482 . TC TCC 214 . INDEL;DP=46;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,22,19;MQ=47;FQ=-158 GT:PL:GQ 1/1:255,123,0:99 chr1 94312563 . T C 7.59 . DP=5;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,0;MQ=29;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr1 94335194 . A T 23 . DP=4;VDB=0.0301;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:55,9,0:15 chr1 94341137 . C T 54.3 . DP=5;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:87,15,0:27 chr1 94341267 . A G 170 . DP=68;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,39,29;MQ=60;FQ=-232 GT:PL:GQ 1/1:203,205,0:99 chr1 94342564 . C A 183 . DP=99;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,18,72;MQ=60;FQ=-282 GT:PL:GQ 1/1:216,255,0:99 chr1 94343023 . A G 204 . DP=97;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,39,54;MQ=60;FQ=-282 GT:PL:GQ 1/1:237,255,0:99 chr1 94343233 . T C 222 . DP=111;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,53,54;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 94344716 . C T 222 . DP=202;VDB=0.0322;AF1=1;AC1=2;DP4=0,1,91,104;MQ=60;FQ=-282;PV4=1,1e-06,1,0.29 GT:PL:GQ 1/1:255,255,0:99 chr1 94466659 . A G 168 . DP=17;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,7,2,8;MQ=60;FQ=93;PV4=0.49,1,1,0.3 GT:PL:GQ 0/1:198,0,120:99 chr1 94467221 . G A 225 . DP=87;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,19,24,15;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 94467238 . G A 169 . DP=90;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,23,20,20;MQ=60;FQ=172;PV4=1,1.4e-29,1,1 GT:PL:GQ 0/1:199,0,255:99 chr1 94467407 . C T 225 . DP=92;VDB=0.0400;AF1=0.5;AC1=1;DP4=26,21,21,20;MQ=60;FQ=225;PV4=0.83,0.0069,1,0.47 GT:PL:GQ 0/1:255,0,255:99 chr1 94467447 . G A 184 . DP=87;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,27,18,21;MQ=60;FQ=187;PV4=0.83,2.9e-21,1,1 GT:PL:GQ 0/1:214,0,255:99 chr1 94471075 . A G 84 . DP=82;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,36,6,21;MQ=60;FQ=87;PV4=0.31,7.3e-26,1,0.33 GT:PL:GQ 0/1:114,0,255:99 chr1 94476555 . G A 45.1 . DP=7;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:78,18,0:33 chr1 94480037 . C T 18.1 . DP=6;VDB=0.0033;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=20.3;PV4=1,0.0053,1,1 GT:PL:GQ 0/1:48,0,55:50 chr1 94484059 . ATT AT 217 . INDEL;DP=47;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,12,12,11;MQ=59;FQ=217;PV4=1,8.7e-10,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr1 94487285 . AACA AA 217 . INDEL;DP=31;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,3,10,3;MQ=59;FQ=217;PV4=0.68,3.3e-06,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 94487354 . G A 175 . DP=87;VDB=0.0365;AF1=0.5;AC1=1;DP4=33,10,29,15;MQ=60;FQ=178;PV4=0.34,3.8e-26,1,0.15 GT:PL:GQ 0/1:205,0,255:99 chr1 94495930 . T C 84 . DP=12;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:117,33,0:63 chr1 94496253 . G A 26 . DP=3;VDB=0.0178;AF1=0.5002;AC1=1;DP4=0,1,1,1;MQ=60;FQ=6.19;PV4=1,0.094,1,0.14 GT:PL:GQ 0/1:56,0,32:35 chr1 94511533 . G A 158 . DP=15;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,15;MQ=60;FQ=-72 GT:PL:GQ 1/1:191,45,0:87 chr1 94544135 . ACCCCCC ACCCCCCC,ACCCCCCCC 44.5 . INDEL;DP=12;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,7,2;MQ=57;FQ=-58.5 GT:PL:GQ 1/1:91,30,6,71,0,68:45 chr1 94544233 . G A 225 . DP=67;VDB=0.0345;AF1=0.5;AC1=1;DP4=24,8,21,13;MQ=59;FQ=225;PV4=0.3,0.093,1,0.29 GT:PL:GQ 0/1:255,0,255:99 chr1 94544234 . T C 225 . DP=65;VDB=0.0216;AF1=0.5;AC1=1;DP4=21,13,23,8;MQ=59;FQ=225;PV4=0.3,1,0.46,1 GT:PL:GQ 0/1:255,0,255:99 chr1 94544276 . G A 129 . DP=74;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,22,11,18;MQ=59;FQ=132;PV4=0.47,2.8e-25,0.078,1 GT:PL:GQ 0/1:159,0,255:99 chr1 94544326 . GTT GT 163 . INDEL;DP=56;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,30,3,16;MQ=60;FQ=166;PV4=1,0.052,0.089,0.034 GT:PL:GQ 0/1:201,0,255:99 chr1 94549029 . A G 94 . DP=16;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,8,0,7;MQ=60;FQ=97;PV4=1,0.011,1,0.37 GT:PL:GQ 0/1:124,0,150:99 chr1 94576968 . T C 129 . DP=17;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,10,5;MQ=60;FQ=-72 GT:PL:GQ 1/1:162,45,0:87 chr1 94578548 . T C 222 . DP=53;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,26,25;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 94639337 . A G 59 . DP=15;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:92,42,0:81 chr1 94639447 . C T 222 . DP=154;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,99,49;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 94643531 . T C 169 . DP=99;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,28,25,22;MQ=60;FQ=172;PV4=0.54,1.9e-30,0.15,0.073 GT:PL:GQ 0/1:199,0,255:99 chr1 94667970 . T C 108 . DP=35;VDB=0.0066;AF1=0.5;AC1=1;DP4=15,1,15,4;MQ=60;FQ=111;PV4=0.35,8.5e-17,1,0.36 GT:PL:GQ 0/1:138,0,203:99 chr1 94668046 . C T 190 . DP=86;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,55,27;MQ=60;FQ=-274 GT:PL:GQ 1/1:223,247,0:99 chr1 94670784 . T C 87 . DP=16;VDB=0.0325;AF1=0.5;AC1=1;DP4=2,8,0,6;MQ=60;FQ=90;PV4=0.5,1,1,0.079 GT:PL:GQ 0/1:117,0,199:99 chr1 94674723 . G A 222 . DP=17;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,2;MQ=59;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 94883995 . C T 42 . DP=11;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,1,5,0;MQ=60;FQ=45;PV4=1,0.00062,1,0.44 GT:PL:GQ 0/1:72,0,125:75 chr1 94941376 . G A 37.8 . DP=2;VDB=0.0182;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:69,6,0:10 chr1 94980671 . C G 222 . DP=59;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,38,19;MQ=59;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr1 95001600 . A C 173 . DP=17;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,6,10;MQ=60;FQ=-75 GT:PL:GQ 1/1:206,48,0:93 chr1 95211525 . G A 73 . DP=21;VDB=0.0081;AF1=0.5;AC1=1;DP4=5,6,2,8;MQ=60;FQ=76;PV4=0.36,1.5e-08,1,0.15 GT:PL:GQ 0/1:103,0,239:99 chr1 95286085 . G A 100 . DP=17;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,4,3,6;MQ=60;FQ=103;PV4=0.64,0.023,1,1 GT:PL:GQ 0/1:130,0,154:99 chr1 95286094 . G T 222 . DP=16;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,7,9;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 95286658 . C A 63 . DP=33;VDB=0.0373;AF1=0.5;AC1=1;DP4=6,14,1,12;MQ=53;FQ=66;PV4=0.2,2.7e-13,1.5e-07,0.38 GT:PL:GQ 0/1:93,0,255:96 chr1 95286675 . GTCCCAAATGTAAATC GTC 32.5 . INDEL;DP=26;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,10,0,6;MQ=52;FQ=35.5;PV4=0.52,1,0,1 GT:PL:GQ 0/1:70,0,255:73 chr1 95290003 . C T 25 . DP=4;VDB=0.0137;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=23.3;PV4=1,1,1,0.23 GT:PL:GQ 0/1:55,0,52:53 chr1 95291366 . A G 98 . DP=38;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,32,2;MQ=60;FQ=-129 GT:PL:GQ 1/1:131,102,0:99 chr1 95305440 . A G 225 . DP=221;VDB=0.0365;AF1=0.5;AC1=1;DP4=72,40,66,41;MQ=60;FQ=225;PV4=0.78,0.46,0.49,1 GT:PL:GQ 0/1:255,0,255:99 chr1 95330372 . G A 225 . DP=107;VDB=0.0398;AF1=0.5;AC1=1;DP4=33,23,28,21;MQ=59;FQ=225;PV4=1,0.29,0.24,0.057 GT:PL:GQ 0/1:255,0,255:99 chr1 95367894 . A C 105 . DP=21;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,3,18;MQ=60;FQ=-90 GT:PL:GQ 1/1:138,63,0:99 chr1 95368574 . TAAAAAAAAAAAAAA TAAAAAAAAAAAAAAAA,TAAAAAAAAAAAAAAA 14.6 . INDEL;DP=19;VDB=0.0140;AF1=1;AC1=2;DP4=0,1,16,1;MQ=56;FQ=-65.5;PV4=0.11,1,0.34,1 GT:PL:GQ 1/1:55,31,0,60,20,55:42 chr1 95369211 . T G 174 . DP=16;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,15;MQ=60;FQ=-72 GT:PL:GQ 1/1:207,45,0:87 chr1 95392588 . C T 49 . DP=6;VDB=0.0017;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=27;PV4=1,0.41,1,1 GT:PL:GQ 0/1:79,0,54:57 chr1 95696612 . C T 161 . DP=45;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,12,8,17;MQ=59;FQ=164;PV4=0.76,7.6e-16,0.19,1 GT:PL:GQ 0/1:191,0,255:99 chr1 95705615 . G A 108 . DP=32;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,3,28;MQ=60;FQ=-120 GT:PL:GQ 1/1:141,93,0:99 chr1 95709821 . T C 222 . DP=93;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,50,39;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 95709939 . T G 202 . DP=88;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,44,39;MQ=60;FQ=-277 GT:PL:GQ 1/1:235,250,0:99 chr1 95710329 . A G 97 . DP=9;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,3,0,6;MQ=60;FQ=45;PV4=1,0.3,1,1 GT:PL:GQ 0/1:127,0,72:75 chr1 97547831 . G A 222 . DP=65;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,53,6;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 97981395 . T C 225 . DP=91;VDB=0.0398;AF1=0.5;AC1=1;DP4=28,15,30,17;MQ=60;FQ=225;PV4=1,1,1,0.16 GT:PL:GQ 0/1:255,0,255:99 chr1 98348885 . G A 222 . DP=90;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,45,42;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 98349390 . CAAAAAAAAAAA CAAAAAAAAAAAA 43.5 . INDEL;DP=27;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,7,14;MQ=60;FQ=-97.5 GT:PL:GQ 1/1:84,63,0:99 chr1 99127392 . T C 22.8 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:54,6,0:10 chr1 99127522 . C T 37 . DP=5;VDB=0.0130;AF1=0.5;AC1=1;DP4=1,1,1,2;MQ=60;FQ=32.2;PV4=1,0.014,1,0.22 GT:PL:GQ 0/1:67,0,60:62 chr1 99150635 . G A 218 . DP=43;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,20;MQ=60;FQ=-144 GT:PL:GQ 1/1:251,117,0:99 chr1 99164434 . G A 113 . DP=48;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,21,5,15;MQ=60;FQ=116;PV4=1,3e-12,0.12,0.17 GT:PL:GQ 0/1:143,0,255:99 chr1 99225627 . G A 222 . DP=100;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,56,40;MQ=60;FQ=-282;PV4=1,1,1,1 GT:PL:GQ 1/1:255,255,0:99 chr1 99418911 . Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg Ttgtgtgtgtgtgtgtgtgtgtgtgtgtg,TTGTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 54.7 . INDEL;DP=23;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,0,6;MQ=36;FQ=-49.5 GT:PL:GQ 1/1:137,57,42,88,0,85:27 chr1 100152443 . T C 54 . DP=26;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,5,7,8;MQ=60;FQ=57;PV4=1,9.8e-11,1,1 GT:PL:GQ 0/1:84,0,158:87 chr1 100154899 . T C 225 . DP=104;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,33,20,30;MQ=60;FQ=225;PV4=0.84,1,1,0.31 GT:PL:GQ 0/1:255,0,255:99 chr1 100316589 . A G 42 . DP=23;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,3,9,0;MQ=59;FQ=45;PV4=0.25,2.8e-06,1,0.17 GT:PL:GQ 0/1:72,0,247:75 chr1 100316765 . C T 13.2 . DP=10;VDB=0.0380;AF1=0.5;AC1=1;DP4=0,5,0,5;MQ=60;FQ=16.1;PV4=1,3.3e-07,1,0.3 GT:PL:GQ 0/1:43,0,115:46 chr1 100329889 . G C 80 . DP=78;VDB=0.0190;AF1=0.5;AC1=1;DP4=32,3,37,4;MQ=60;FQ=83;PV4=1,3.3e-29,1,1 GT:PL:GQ 0/1:110,0,255:99 chr1 100336361 . C T 97 . DP=35;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,8,9,5;MQ=59;FQ=100;PV4=1,2.8e-11,1,1 GT:PL:GQ 0/1:127,0,255:99 chr1 100340225 . G A 221 . DP=51;VDB=0.0365;AF1=0.5;AC1=1;DP4=23,4,18,3;MQ=60;FQ=223;PV4=1,1,1,0.18 GT:PL:GQ 0/1:251,0,255:99 chr1 100342227 . C T 85 . DP=59;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,29,2,22;MQ=60;FQ=88;PV4=0.45,1.7e-23,1,0.36 GT:PL:GQ 0/1:115,0,255:99 chr1 100345409 . C G 50 . DP=28;VDB=0.0025;AF1=0.5;AC1=1;DP4=12,0,14,0;MQ=60;FQ=53;PV4=1,3.1e-15,1,1 GT:PL:GQ 0/1:80,0,164:83 chr1 100346741 . T C 123 . DP=67;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,15,12,26;MQ=60;FQ=126;PV4=0.31,1.9e-33,1,1 GT:PL:GQ 0/1:153,0,255:99 chr1 100353675 . G A 166 . DP=83;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,26,15,23;MQ=59;FQ=169;PV4=1,3.6e-24,0.065,0.25 GT:PL:GQ 0/1:196,0,255:99 chr1 100357141 . T A 74 . DP=32;VDB=0.0140;AF1=0.5;AC1=1;DP4=14,1,13,2;MQ=60;FQ=77;PV4=1,2.4e-17,1,0.11 GT:PL:GQ 0/1:104,0,211:99 chr1 100358200 . G A 96 . DP=62;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,31,2,26;MQ=59;FQ=99;PV4=1,1.4e-22,0.061,1 GT:PL:GQ 0/1:126,0,247:99 chr1 100366446 . GTTTTTTTTTTTTTTT GTTTTTTTTTTTTT 4.05 . INDEL;DP=25;VDB=0.0345;AF1=0.5554;AC1=1;DP4=0,4,1,9;MQ=58;FQ=-27.5;PV4=1,0.33,0.27,0.36 GT:PL:GQ 0/1:39,0,7:13 chr1 100376448 . G A 16.1 . DP=33;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,13,1,14;MQ=58;FQ=19.1;PV4=1,2.9e-21,0.08,1 GT:PL:GQ 0/1:46,0,228:49 chr1 100376456 . T A 77 . DP=27;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,10,1,15;MQ=57;FQ=80;PV4=1,4.6e-13,0.072,1 GT:PL:GQ 0/1:107,0,180:99 chr1 100381869 . G A 8.44 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr1 100472604 . A G 30 . DP=11;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,0,3,2;MQ=58;FQ=33;PV4=0.18,2.8e-05,1,1 GT:PL:GQ 0/1:60,0,125:63 chr1 100483213 . A G 34 . DP=21;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,4,3,7;MQ=60;FQ=37;PV4=0.2,1.2e-12,1,0.29 GT:PL:GQ 0/1:64,0,238:67 chr1 100488177 . C T 61 . DP=19;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,13,0,5;MQ=60;FQ=64;PV4=1,0.43,1,0.088 GT:PL:GQ 0/1:91,0,175:94 chr1 100503993 . A C 73 . DP=12;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,7,0,5;MQ=60;FQ=76;PV4=1,1,1,1 GT:PL:GQ 0/1:103,0,131:99 chr1 100515616 . T C 55 . DP=44;VDB=0.0216;AF1=0.5;AC1=1;DP4=8,18,5,11;MQ=60;FQ=58;PV4=1,4.2e-19,1,1 GT:PL:GQ 0/1:85,0,255:88 chr1 100543962 . A G 107 . DP=61;VDB=0.0190;AF1=0.5;AC1=1;DP4=25,13,18,5;MQ=60;FQ=110;PV4=0.39,4.2e-22,1,1 GT:PL:GQ 0/1:137,0,255:99 chr1 100587146 . T C 31 . DP=8;VDB=0.0133;AF1=0.5;AC1=1;DP4=1,4,0,3;MQ=57;FQ=34;PV4=1,0.27,0.11,1 GT:PL:GQ 0/1:61,0,132:64 chr1 100617887 . C T 109 . DP=21;VDB=0.0011;AF1=0.5;AC1=1;DP4=10,0,11,0;MQ=60;FQ=112;PV4=1,0.0035,1,1 GT:PL:GQ 0/1:139,0,154:99 chr1 100671755 . A C 37 . DP=24;VDB=0.0359;AF1=0.5;AC1=1;DP4=6,5,11,1;MQ=59;FQ=40;PV4=0.069,2.9e-13,1,0.23 GT:PL:GQ 0/1:67,0,211:70 chr1 100672060 . T C 141 . DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,8,14,12;MQ=59;FQ=144;PV4=0.4,3.2e-22,0.086,1 GT:PL:GQ 0/1:171,0,255:99 chr1 100715454 . G A 123 . DP=35;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,11,1,20;MQ=60;FQ=124;PV4=1,0.00043,1,0.41 GT:PL:GQ 0/1:153,0,156:99 chr1 100733552 . T C 63 . DP=5;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:95,9,0:16 chr1 100750733 . Agttttgttttgttttgttttgttttgtttt Agttttgttttgttttgttttgtttt 214 . INDEL;DP=25;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,21,1;MQ=59;FQ=-101 GT:PL:GQ 1/1:255,66,0:99 chr1 100817384 . A G 132 . DP=27;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,10,5,10;MQ=59;FQ=135;PV4=0.41,7.1e-11,0.19,1 GT:PL:GQ 0/1:162,0,206:99 chr1 100818464 . T C 92 . DP=10;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:125,30,0:57 chr1 100856479 . C T 225 . DP=72;VDB=0.0398;AF1=0.5;AC1=1;DP4=18,26,12,16;MQ=59;FQ=225;PV4=1,1,1,0.47 GT:PL:GQ 0/1:255,0,255:99 chr1 100908577 . A T 61 . DP=41;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,14,4,13;MQ=59;FQ=64;PV4=0.33,6.7e-19,1,0.16 GT:PL:GQ 0/1:91,0,255:94 chr1 100949860 . G A 169 . DP=22;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,4,6,3;MQ=60;FQ=172;PV4=1,1,1,1 GT:PL:GQ 0/1:199,0,239:99 chr1 100963829 . G A 62 . DP=25;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,10,0,14;MQ=60;FQ=65;PV4=0.44,1e-08,1,1 GT:PL:GQ 0/1:92,0,179:95 chr1 100970346 . T C 174 . DP=131;VDB=0.0380;AF1=0.5;AC1=1;DP4=41,17,54,17;MQ=60;FQ=177;PV4=0.55,6.7e-36,1,0.22 GT:PL:GQ 0/1:204,0,255:99 chr1 101005090 . G A 169 . DP=13;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,6,7;MQ=60;FQ=-66 GT:PL:GQ 1/1:202,39,0:75 chr1 101203827 . G A 189 . DP=45;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,17,25;MQ=59;FQ=-153 GT:PL:GQ 1/1:222,126,0:99 chr1 101342497 . T C 65 . DP=3;VDB=0.0189;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:97,9,0:16 chr1 101372607 . C A 22.3 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:55,15,0:26 chr1 101704532 . G T 21 . DP=21;VDB=0.0033;AF1=0.5;AC1=1;DP4=13,0,7,1;MQ=60;FQ=24;PV4=0.38,5.2e-10,1,1 GT:PL:GQ 0/1:51,0,166:54 chr1 102271774 . G A 225 . DP=96;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,30,17,33;MQ=60;FQ=225;PV4=1,0.17,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 102312412 . G A 124 . DP=44;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,9,16,10;MQ=58;FQ=127;PV4=0.54,7e-16,1,1 GT:PL:GQ 0/1:154,0,255:99 chr1 102462446 . GTCAGTT GT 192 . INDEL;DP=32;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,18,2,8;MQ=55;FQ=195;PV4=0.27,0.068,1e-05,0.27 GT:PL:GQ 0/1:230,0,255:99 chr1 103343470 . G A 118 . DP=13;VDB=0.0053;AF1=0.5;AC1=1;DP4=4,1,8,0;MQ=58;FQ=72;PV4=0.38,1,1,0.29 GT:PL:GQ 0/1:148,0,99:99 chr1 103352451 . A G 159 . DP=130;VDB=0.0398;AF1=0.5;AC1=1;DP4=41,27,33,23;MQ=60;FQ=162;PV4=1,6.4e-49,1,0.49 GT:PL:GQ 0/1:189,0,255:99 chr1 103354138 . A G 203 . DP=40;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,27,11;MQ=60;FQ=-141 GT:PL:GQ 1/1:236,114,0:99 chr1 103354428 . A G 196 . DP=41;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,23;MQ=59;FQ=-135 GT:PL:GQ 1/1:229,108,0:99 chr1 103354939 . Ctgtgtgtgtgtgtgtgtgtgtgtgtgt CTGTGTGTGTGtgtgtgtgtgtgtgtgtgtgtgtgtgt,CTGtgtgtgtgtgtgtgtgtgtgtgtgtgt 95.2 . INDEL;DP=9;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,4,1;MQ=55;FQ=-44.5 GT:PL:GQ 1/1:196,71,61,135,0,129:17 chr1 103356168 . A C 34.3 . DP=6;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:67,15,0:27 chr1 103364120 . T G 17.8 . DP=2;VDB=0.0135;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:49,6,0:10 chr1 103364396 . C T 42 . DP=5;VDB=0.0225;AF1=0.5;AC1=1;DP4=0,2,1,2;MQ=60;FQ=28.9;PV4=1,0.23,1,0.15 GT:PL:GQ 0/1:72,0,56:59 chr1 103379918 . G A 128 . DP=40;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,10,12,11;MQ=59;FQ=131;PV4=0.52,1e-17,1,0.22 GT:PL:GQ 0/1:158,0,255:99 chr1 103388799 . TACA TA 217 . INDEL;DP=35;VDB=0.0164;AF1=0.5;AC1=1;DP4=13,3,12,3;MQ=59;FQ=217;PV4=1,1.2e-08,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr1 103405793 . G A 50 . DP=6;VDB=0.0244;AF1=0.5006;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-3.53;PV4=1,0.21,1,0.25 GT:PL:GQ 0/1:80,0,26:29 chr1 103428389 . G A 112 . DP=30;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,24;MQ=60;FQ=-102 GT:PL:GQ 1/1:145,75,0:99 chr1 103444679 . T G 204 . DP=66;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,31,33;MQ=60;FQ=-220 GT:PL:GQ 1/1:237,193,0:99 chr1 103449598 . G C 68 . DP=4;VDB=0.0110;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:100,9,0:16 chr1 103455217 . C T 152 . DP=10;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:185,30,0:57 chr1 103461508 . T A 56 . DP=12;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,0;MQ=53;FQ=-60 GT:PL:GQ 1/1:89,33,0:63 chr1 103467615 . C T 116 . DP=9;VDB=0.0066;AF1=1;AC1=2;DP4=0,1,0,8;MQ=60;FQ=-27;PV4=1,1,1,0.16 GT:PL:GQ 0/1:144,0,0:3 chr1 103468609 . A G 37 . DP=11;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:70,27,0:51 chr1 103471456 . Ccatcatcatcatcatcatcatcatcatcatca Ccatcatcatcatcatcatcatcatcatca 214 . INDEL;DP=53;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,11,17;MQ=60;FQ=-119 GT:PL:GQ 1/1:255,84,0:99 chr1 103483514 . C T 82.1 . DP=8;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:115,21,0:39 chr1 103496620 . G T 162 . DP=12;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:195,33,0:63 chr1 103496805 . GAAAAAAAAAAAAA GAAAAAAAAAAAA 20.5 . INDEL;DP=39;VDB=0.0400;AF1=1;AC1=2;DP4=1,1,4,22;MQ=60;FQ=-92.5;PV4=0.33,1,1,1 GT:PL:GQ 1/1:61,58,0:75 chr1 103573547 . G A 78 . DP=11;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,8,2;MQ=58;FQ=-57 GT:PL:GQ 1/1:111,30,0:57 chr1 104076462 . C T 205 . DP=22;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,8;MQ=60;FQ=-87 GT:PL:GQ 1/1:238,60,0:99 chr1 104076495 . A G 172 . DP=20;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,7,13;MQ=60;FQ=-87 GT:PL:GQ 1/1:205,60,0:99 chr1 104076537 . A T 3.41 . DP=14;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:32,6,0:4 chr1 104080169 . G C 102 . DP=11;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:135,27,0:51 chr1 104084226 . A G 210 . DP=19;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,18;MQ=60;FQ=-84 GT:PL:GQ 1/1:243,57,0:99 chr1 104086145 . A G 222 . DP=36;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,3,32;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 104117921 . G A 106 . DP=46;VDB=0.0398;AF1=0.5;AC1=1;DP4=15,6,16,7;MQ=56;FQ=109;PV4=1,6.3e-14,0.18,1 GT:PL:GQ 0/1:136,0,255:99 chr1 107599747 . C T 188 . DP=78;VDB=0.0400;AF1=0.5;AC1=1;DP4=20,14,23,20;MQ=60;FQ=191;PV4=0.65,3.3e-25,1,1 GT:PL:GQ 0/1:218,0,255:99 chr1 107963826 . T G 88 . DP=37;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,16,2,13;MQ=59;FQ=91;PV4=0.43,8.4e-15,1,0.35 GT:PL:GQ 0/1:118,0,255:99 chr1 107979396 . A C 173 . DP=48;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,10,36;MQ=60;FQ=-165 GT:PL:GQ 1/1:206,138,0:99 chr1 108116051 . G A 57 . DP=41;VDB=0.0164;AF1=0.5;AC1=1;DP4=3,17,2,19;MQ=59;FQ=60;PV4=0.66,4.4e-16,1,1 GT:PL:GQ 0/1:87,0,237:90 chr1 108119007 . G C 95 . DP=26;VDB=0.0190;AF1=0.5;AC1=1;DP4=10,4,5,6;MQ=59;FQ=98;PV4=0.24,4.9e-12,0.13,0.41 GT:PL:GQ 0/1:125,0,255:99 chr1 108138961 . T C 104 . DP=44;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,19,2,21;MQ=60;FQ=107;PV4=1,3.1e-15,1,0.29 GT:PL:GQ 0/1:134,0,236:99 chr1 108292260 . A G 145 . DP=17;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,3,14;MQ=60;FQ=-78 GT:PL:GQ 1/1:178,51,0:99 chr1 108293844 . T C 163 . DP=29;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,15,2,8;MQ=60;FQ=166;PV4=0.61,1,1,1 GT:PL:GQ 0/1:193,0,243:99 chr1 108307642 . C T 109 . DP=6;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:142,18,0:33 chr1 108313258 . C T 97 . DP=26;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,10,7;MQ=60;FQ=-78 GT:PL:GQ 1/1:130,51,0:99 chr1 108315305 . C T 109 . DP=42;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,41,0;MQ=59;FQ=-150 GT:PL:GQ 1/1:142,123,0:99 chr1 108319965 . G C 225 . DP=91;VDB=0.0392;AF1=0.5;AC1=1;DP4=24,25,22,18;MQ=59;FQ=225;PV4=0.67,0.34,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 108703834 . C T 4.77 . DP=29;VDB=0.0325;AF1=0.4999;AC1=1;DP4=13,8,4,3;MQ=60;FQ=6.99;PV4=1,3.4e-09,1,0.45 GT:PL:GQ 0/1:33,0,255:33 chr1 108724518 . A G 101 . DP=57;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,6,23,9;MQ=60;FQ=104;PV4=0.77,2.9e-31,1,1 GT:PL:GQ 0/1:131,0,255:99 chr1 108724693 . G A 26 . DP=6;VDB=0.0236;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=60;FQ=26;PV4=1,9.9e-05,1,0.22 GT:PL:GQ 0/1:56,0,56:56 chr1 108766424 . A G 101 . DP=50;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,26,3,17;MQ=43;FQ=104;PV4=0.64,2.2e-16,0.37,1 GT:PL:GQ 0/1:131,0,201:99 chr1 109170746 . C T 80 . DP=24;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,22,2;MQ=60;FQ=-99 GT:PL:GQ 1/1:113,72,0:99 chr1 109242392 . A G 123 . DP=65;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,22,10,18;MQ=60;FQ=126;PV4=1,1.3e-24,1,1 GT:PL:GQ 0/1:153,0,255:99 chr1 109255513 . G T 222 . DP=47;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,30,15;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 109260357 . G A 225 . DP=83;VDB=0.0298;AF1=0.5;AC1=1;DP4=31,13,30,9;MQ=60;FQ=225;PV4=0.62,0.28,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 109261509 . A G 225 . DP=78;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,19,26,7;MQ=60;FQ=225;PV4=0.029,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 109265029 . G T 67 . DP=34;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,5,13,1;MQ=59;FQ=70;PV4=0.36,4.4e-10,1,1 GT:PL:GQ 0/1:97,0,255:99 chr1 109268573 . T C 155 . DP=72;VDB=0.0393;AF1=0.5;AC1=1;DP4=11,30,10,17;MQ=60;FQ=158;PV4=0.43,3.2e-12,1,1 GT:PL:GQ 0/1:185,0,255:99 chr1 109273269 . A G 131 . DP=50;VDB=0.0216;AF1=0.5;AC1=1;DP4=19,7,18,5;MQ=60;FQ=134;PV4=0.75,7e-20,1,0.27 GT:PL:GQ 0/1:161,0,255:99 chr1 109289353 . C G 123 . DP=14;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,3;MQ=60;FQ=-69 GT:PL:GQ 1/1:156,42,0:81 chr1 109289487 . C T 108 . DP=12;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:141,33,0:63 chr1 109299453 . C G 74.5 . DP=4;VDB=0.0309;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:107,12,0:21 chr1 109301250 . G C 170 . DP=35;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,6,29;MQ=59;FQ=-132 GT:PL:GQ 1/1:203,105,0:99 chr1 109321824 . G T 87 . DP=15;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,15,0;MQ=60;FQ=-72 GT:PL:GQ 1/1:120,45,0:87 chr1 109325028 . T C 112 . DP=12;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,8,3;MQ=60;FQ=-60 GT:PL:GQ 1/1:145,33,0:63 chr1 109358958 . T C 222 . DP=30;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,5,23;MQ=60;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 109366370 . C T 222 . DP=36;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,4,32;MQ=59;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 109369791 . G A 63 . DP=11;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:96,33,0:63 chr1 109369797 . T G 107 . DP=13;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,11,2;MQ=60;FQ=-66 GT:PL:GQ 1/1:140,39,0:75 chr1 109369915 . G T 164 . DP=41;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,17,21;MQ=60;FQ=-141 GT:PL:GQ 1/1:197,114,0:99 chr1 109377053 . G A 85 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,2,9,2;MQ=59;FQ=88;PV4=1,1.7e-06,0.15,0.36 GT:PL:GQ 0/1:115,0,204:99 chr1 109377157 . TAAAAAAAAAAAAA TAAAAAAAAAAAA,TAAAAAAAAAAA 18.5 . INDEL;DP=45;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,21,14;MQ=60;FQ=-137 GT:PL:GQ 1/1:59,102,0,61,88,58:96 chr1 109391486 . G A 222 . DP=40;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,27,12;MQ=59;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 109395105 . C T 222 . DP=166;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,78,81;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 109446750 . G A 20 . DP=10;VDB=0.0140;AF1=0.5;AC1=1;DP4=5,0,4,1;MQ=58;FQ=23;PV4=1,9.1e-06,0.17,1 GT:PL:GQ 0/1:50,0,110:53 chr1 109486196 . A G 131 . DP=89;VDB=0.0399;AF1=0.5;AC1=1;DP4=34,21,23,10;MQ=59;FQ=134;PV4=0.5,6e-23,0.36,0.38 GT:PL:GQ 0/1:161,0,255:99 chr1 109486240 . TAAAA TAAA 120 . INDEL;DP=88;VDB=0.0322;AF1=0.5;AC1=1;DP4=23,30,16,15;MQ=59;FQ=123;PV4=0.5,2.9e-05,0.35,1 GT:PL:GQ 0/1:158,0,211:99 chr1 109490457 . T C 85 . DP=23;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,8,4,10;MQ=60;FQ=87.9;PV4=0.25,8.3e-13,1,1 GT:PL:GQ 0/1:115,0,133:99 chr1 109506029 . C G 100 . DP=51;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,9,11,14;MQ=60;FQ=103;PV4=0.26,1.4e-14,0.16,0.08 GT:PL:GQ 0/1:130,0,255:99 chr1 109524584 . C A 3.01 . DP=8;VDB=0.0116;AF1=0.4997;AC1=1;DP4=0,5,0,2;MQ=60;FQ=4.77;PV4=1,0.00033,1,0.27 GT:PL:GQ 0/1:30,0,122:28 chr1 109529322 . TA TAAA 214 . INDEL;DP=25;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,20;MQ=60;FQ=-94.5 GT:PL:GQ 1/1:255,60,0:99 chr1 109545046 . C T 98.5 . DP=6;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:131,12,0:21 chr1 109704361 . A G 130 . DP=15;VDB=0.0025;AF1=0.5;AC1=1;DP4=5,0,10,0;MQ=58;FQ=68;PV4=1,1,0.25,1 GT:PL:GQ 0/1:160,0,95:98 chr1 109704390 . C G 32 . DP=28;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:65,27,0:50 chr1 109704618 . A G 222 . DP=60;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,51;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 109714750 . T C 6.2 . DP=5;VDB=0.0204;AF1=0.4999;AC1=1;DP4=0,2,0,3;MQ=60;FQ=8.64;PV4=1,6.9e-05,1,0.23 GT:PL:GQ 0/1:35,0,61:36 chr1 109734157 . T C 184 . DP=18;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,4,14;MQ=60;FQ=-81 GT:PL:GQ 1/1:217,54,0:99 chr1 109734225 . G T 8.44 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr1 109734541 . C T 113 . DP=20;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,17;MQ=60;FQ=-81 GT:PL:GQ 1/1:146,54,0:99 chr1 109735298 . T C 222 . DP=52;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,21,30;MQ=59;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 109735416 . A C 149 . DP=32;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,15,16;MQ=59;FQ=-120 GT:PL:GQ 1/1:182,93,0:99 chr1 109735504 . T C 162 . DP=8;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:195,24,0:45 chr1 109737063 . C T 211 . DP=30;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,29,1;MQ=60;FQ=-117 GT:PL:GQ 1/1:244,90,0:99 chr1 109737090 . G A 207 . DP=46;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,37,7;MQ=60;FQ=-159 GT:PL:GQ 1/1:240,132,0:99 chr1 109737132 . T C 222 . DP=62;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,31,27;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 109737172 . C T 222 . DP=62;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,22,38;MQ=60;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr1 109737314 . T C 104 . DP=8;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:137,15,0:27 chr1 109737320 . G A 31.3 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:64,15,0:27 chr1 109740548 . G T 95 . DP=30;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,4,10,6;MQ=59;FQ=98;PV4=0.71,2.1e-08,0.18,0.051 GT:PL:GQ 0/1:125,0,239:99 chr1 109742485 . G A 58.1 . DP=7;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:91,18,0:33 chr1 109743622 . C T 21 . DP=12;VDB=0.0001;AF1=0.5;AC1=1;DP4=1,6,0,5;MQ=60;FQ=24;PV4=1,9.3e-06,1,0.19 GT:PL:GQ 0/1:51,0,150:54 chr1 109745618 . T C 171 . DP=32;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,6,24;MQ=59;FQ=-117 GT:PL:GQ 1/1:204,90,0:99 chr1 109771063 . T C 225 . DP=90;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,32,17,26;MQ=59;FQ=225;PV4=0.51,0.45,0.47,0.47 GT:PL:GQ 0/1:255,0,255:99 chr1 109771881 . G T 37 . DP=3;VDB=0.0050;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:69,9,0:16 chr1 109778577 . T C 13.2 . DP=19;VDB=0.0190;AF1=0.5;AC1=1;DP4=10,4,4,1;MQ=60;FQ=16.1;PV4=1,0.0015,1,0.35 GT:PL:GQ 0/1:43,0,245:46 chr1 109779556 . T A 222 . DP=42;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,7,35;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 109779621 . TC TCC 113 . INDEL;DP=15;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,6,0,8;MQ=60;FQ=70.5;PV4=1,1,1,1 GT:PL:GQ 0/1:151,0,105:99 chr1 109792735 . ACgccgccgccgccgc ACGCCgccgccgccgccgc 144 . INDEL;DP=6;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:184,12,0:21 chr1 109794252 . T C 222 . DP=187;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,60,117;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 109795026 . T C 222 . DP=78;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,35,42;MQ=59;FQ=-259 GT:PL:GQ 1/1:255,232,0:99 chr1 109795608 . T C 157 . DP=87;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,43,42;MQ=60;FQ=-282 GT:PL:GQ 1/1:190,255,0:99 chr1 109801121 . C T 138 . DP=82;VDB=0.0244;AF1=0.5;AC1=1;DP4=28,11,33,10;MQ=60;FQ=141;PV4=0.62,2.9e-25,1,1 GT:PL:GQ 0/1:168,0,255:99 chr1 109806313 . T C 225 . DP=122;VDB=0.0392;AF1=0.5;AC1=1;DP4=29,34,15,41;MQ=60;FQ=225;PV4=0.037,0.4,0.066,0.16 GT:PL:GQ 0/1:255,0,255:99 chr1 109806442 . C A 49 . DP=20;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,5,0,12;MQ=60;FQ=51.5;PV4=1,5.6e-07,1,1 GT:PL:GQ 0/1:79,0,88:81 chr1 109808329 . G A 132 . DP=94;VDB=0.0365;AF1=0.5;AC1=1;DP4=41,15,24,10;MQ=60;FQ=135;PV4=0.81,1e-21,1,1 GT:PL:GQ 0/1:162,0,255:99 chr1 109813510 . A T 28 . DP=9;VDB=0.0002;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=31;PV4=1,0.006,1,0.38 GT:PL:GQ 0/1:58,0,83:61 chr1 109813719 . C T 151 . DP=45;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,13,6,18;MQ=60;FQ=154;PV4=1,6.7e-11,1,0.12 GT:PL:GQ 0/1:181,0,255:99 chr1 109814721 . G A 47 . DP=8;VDB=0.0001;AF1=0.5;AC1=1;DP4=2,0,6,0;MQ=60;FQ=17.1;PV4=1,0.00025,1,0.19 GT:PL:GQ 0/1:77,0,44:47 chr1 109815252 . A G 176 . DP=40;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,3,15,2;MQ=59;FQ=179;PV4=1,0.22,1,1 GT:PL:GQ 0/1:206,0,255:99 chr1 109816176 . A C 182 . DP=23;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,1,21;MQ=59;FQ=-93 GT:PL:GQ 1/1:215,66,0:99 chr1 109825360 . C T 43.5 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:76,12,0:21 chr1 109836835 . A G 176 . DP=126;VDB=0.0345;AF1=0.5;AC1=1;DP4=27,31,25,41;MQ=59;FQ=179;PV4=0.37,9.2e-38,1,1 GT:PL:GQ 0/1:206,0,255:99 chr1 109836842 . C G 154 . DP=133;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,46,25,30;MQ=59;FQ=157;PV4=0.47,1.1e-42,0.15,0.4 GT:PL:GQ 0/1:184,0,255:99 chr1 109838833 . T C 194 . DP=10;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,8,2;MQ=60;FQ=-57 GT:PL:GQ 1/1:227,30,0:57 chr1 109838918 . C T 210 . DP=28;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,8;MQ=59;FQ=-105 GT:PL:GQ 1/1:243,78,0:99 chr1 109839392 . A G 222 . DP=42;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,35,4;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 109839433 . A G 222 . DP=58;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,34,18;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 109839738 . C A 225 . DP=68;VDB=0.0359;AF1=0.5;AC1=1;DP4=24,14,18,9;MQ=60;FQ=225;PV4=0.8,0.17,1,0.31 GT:PL:GQ 0/1:255,0,255:99 chr1 109839896 . C T 55 . DP=40;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,19,1,17;MQ=60;FQ=58;PV4=1,4.2e-17,1,1 GT:PL:GQ 0/1:85,0,234:88 chr1 109839954 . G C 75 . DP=13;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:108,33,0:63 chr1 109883576 . C CAT 217 . INDEL;DP=22;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,11,4,6;MQ=60;FQ=217;PV4=0.14,1,1,0.19 GT:PL:GQ 0/1:255,0,255:99 chr1 109884775 . T G 78 . DP=20;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,5,4,9;MQ=60;FQ=81;PV4=1,1.5e-09,1,0.074 GT:PL:GQ 0/1:108,0,153:99 chr1 109897103 . A G 110 . DP=38;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,7,12,10;MQ=59;FQ=113;PV4=1,3.9e-17,0.2,1 GT:PL:GQ 0/1:140,0,253:99 chr1 109958035 . T C 35 . DP=9;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,4,0,5;MQ=57;FQ=38;PV4=1,7.8e-05,0.2,0.44 GT:PL:GQ 0/1:65,0,101:68 chr1 110018148 . C T 85 . DP=12;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:118,36,0:69 chr1 110030945 . A G 22 . DP=24;VDB=0.0164;AF1=0.5;AC1=1;DP4=11,5,4,3;MQ=59;FQ=25;PV4=0.66,1.4e-11,1,1 GT:PL:GQ 0/1:52,0,255:55 chr1 110035159 . T C 81 . DP=20;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,4,6,3;MQ=60;FQ=84;PV4=1,1.7e-07,1,1 GT:PL:GQ 0/1:111,0,220:99 chr1 110036919 . C G 80 . DP=69;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,23,12,13;MQ=60;FQ=83;PV4=0.61,2.6e-17,1,1 GT:PL:GQ 0/1:110,0,255:99 chr1 110036998 . G C 113 . DP=36;VDB=0.0373;AF1=0.5;AC1=1;DP4=6,13,6,10;MQ=60;FQ=116;PV4=0.74,1.3e-14,1,0.23 GT:PL:GQ 0/1:143,0,255:99 chr1 110037838 . T G 162 . DP=61;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,19,8,23;MQ=60;FQ=165;PV4=0.77,3.1e-20,0.17,1 GT:PL:GQ 0/1:192,0,255:99 chr1 110148974 . C T 120 . DP=119;VDB=0.0345;AF1=0.5;AC1=1;DP4=39,25,37,14;MQ=60;FQ=123;PV4=0.24,1.7e-39,1,1 GT:PL:GQ 0/1:150,0,255:99 chr1 110163076 . A G 4.13 . DP=6;VDB=0.0133;AF1=0.4998;AC1=1;DP4=0,3,0,3;MQ=60;FQ=6.2;PV4=1,0.00012,1,1 GT:PL:GQ 0/1:32,0,84:31 chr1 110168888 . C G 158 . DP=90;VDB=0.0345;AF1=0.5;AC1=1;DP4=22,31,14,22;MQ=59;FQ=161;PV4=0.83,1.8e-14,0.042,1 GT:PL:GQ 0/1:188,0,255:99 chr1 110169957 . A G 225 . DP=64;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,13,18,11;MQ=60;FQ=225;PV4=1,1,1,0.49 GT:PL:GQ 0/1:255,0,255:99 chr1 110170896 . T C 225 . DP=48;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,7,20,6;MQ=60;FQ=225;PV4=0.51,0.11,1,0.48 GT:PL:GQ 0/1:255,0,255:99 chr1 110171705 . A C 89 . DP=24;VDB=0.0343;AF1=0.5;AC1=1;DP4=9,3,7,5;MQ=60;FQ=92;PV4=0.67,4.5e-09,1,0.08 GT:PL:GQ 0/1:119,0,224:99 chr1 110172346 . TGGGGG TGGGGGG 9.93 . INDEL;DP=13;VDB=0.0033;AF1=0.5;AC1=1;DP4=8,0,4,1;MQ=60;FQ=12.5;PV4=0.38,1,1,0.045 GT:PL:GQ 0/1:47,0,60:49 chr1 110172362 . C T 46 . DP=20;VDB=0.0025;AF1=0.5;AC1=1;DP4=11,1,5,1;MQ=60;FQ=49;PV4=1,7.5e-07,1,1 GT:PL:GQ 0/1:76,0,198:79 chr1 110199172 . Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 7.35 . INDEL;DP=14;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=54;FQ=9.94;PV4=1,0.22,0.21,1 GT:PL:GQ 0/1:44,0,75:45 chr1 110200360 . T C 225 . DP=83;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,12,29,19;MQ=60;FQ=225;PV4=0.82,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 110201580 . C T 222 . DP=116;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,56,56;MQ=57;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 110201699 . T C 87 . DP=18;VDB=0.0325;AF1=1;AC1=2;DP4=0,0,3,9;MQ=49;FQ=-63 GT:PL:GQ 1/1:120,36,0:69 chr1 110201809 . G T 222 . DP=41;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,29,8;MQ=58;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 110201812 . A G 222 . DP=43;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,32,9;MQ=58;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 110210780 . C G 155 . DP=22;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,18;MQ=59;FQ=-90 GT:PL:GQ 1/1:188,63,0:99 chr1 110251115 . G A 225 . DP=60;VDB=0.0373;AF1=0.5;AC1=1;DP4=25,13,11,10;MQ=60;FQ=225;PV4=0.41,0.016,1,0.085 GT:PL:GQ 0/1:255,0,255:99 chr1 110252010 . T C 88 . DP=52;VDB=0.0298;AF1=0.5;AC1=1;DP4=17,11,11,12;MQ=60;FQ=91;PV4=0.41,1.6e-21,1,1 GT:PL:GQ 0/1:118,0,255:99 chr1 110256075 . A G 14.2 . DP=14;VDB=0.0011;AF1=0.5;AC1=1;DP4=9,0,5,0;MQ=58;FQ=17.1;PV4=1,2.5e-08,1,1 GT:PL:GQ 0/1:44,0,150:47 chr1 110279821 . C A 72 . DP=109;VDB=0.0190;AF1=0.5;AC1=1;DP4=33,42,16,18;MQ=60;FQ=75;PV4=0.84,9.9e-33,0.28,1 GT:PL:GQ 0/1:102,0,255:99 chr1 110281941 . G A 19.1 . DP=8;VDB=0.0332;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=57;FQ=22;PV4=1,0.0064,1,0.08 GT:PL:GQ 0/1:49,0,93:52 chr1 110282972 . G T 225 . DP=75;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,30,9,33;MQ=60;FQ=191;PV4=0.1,0.18,1,0.072 GT:PL:GQ 0/1:255,0,218:99 chr1 110294577 . A G 131 . DP=42;VDB=0.0398;AF1=0.5;AC1=1;DP4=16,7,9,6;MQ=60;FQ=134;PV4=0.73,4.1e-06,1,0.15 GT:PL:GQ 0/1:161,0,255:99 chr1 110295643 . G T 21 . DP=22;VDB=0.0393;AF1=0.5;AC1=1;DP4=12,3,6,1;MQ=60;FQ=24;PV4=1,6.1e-07,1,0.34 GT:PL:GQ 0/1:51,0,242:54 chr1 110295772 . T C 165 . DP=79;VDB=0.0271;AF1=0.5;AC1=1;DP4=21,19,27,12;MQ=60;FQ=168;PV4=0.17,1.1e-21,1,1 GT:PL:GQ 0/1:195,0,255:99 chr1 110295890 . C G 146 . DP=33;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,12,0,19;MQ=60;FQ=149;PV4=0.17,0.34,1,1 GT:PL:GQ 0/1:176,0,205:99 chr1 110299550 . A G 62 . DP=23;VDB=0.0014;AF1=0.5;AC1=1;DP4=9,1,13,0;MQ=59;FQ=65;PV4=0.43,3.9e-08,1,1 GT:PL:GQ 0/1:92,0,176:95 chr1 110300441 . G A 225 . DP=54;VDB=0.0190;AF1=0.5;AC1=1;DP4=19,7,18,10;MQ=60;FQ=225;PV4=0.57,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 110300504 . A G 175 . DP=73;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,16,17,22;MQ=60;FQ=178;PV4=0.81,2.3e-16,0.19,1 GT:PL:GQ 0/1:205,0,255:99 chr1 110301260 . C T 54 . DP=26;VDB=0.0398;AF1=0.5;AC1=1;DP4=1,7,1,16;MQ=60;FQ=57;PV4=1,5.4e-14,1,0.15 GT:PL:GQ 0/1:84,0,146:87 chr1 110304537 . G A 22 . DP=6;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=60;FQ=22;PV4=1,1.3e-05,1,1 GT:PL:GQ 0/1:52,0,52:52 chr1 110456866 . C A 77 . DP=25;VDB=0.0359;AF1=0.5;AC1=1;DP4=7,4,8,4;MQ=60;FQ=80;PV4=1,9.5e-09,1,0.25 GT:PL:GQ 0/1:107,0,211:99 chr1 110458234 . G A 225 . DP=79;VDB=0.0400;AF1=0.5;AC1=1;DP4=31,12,25,9;MQ=60;FQ=225;PV4=1,0.023,1,0.18 GT:PL:GQ 0/1:255,0,255:99 chr1 110466338 . C A 182 . DP=135;VDB=0.0392;AF1=0.5;AC1=1;DP4=35,25,32,42;MQ=60;FQ=185;PV4=0.12,1.7e-29,1,1 GT:PL:GQ 0/1:212,0,255:99 chr1 110466466 . T C 181 . DP=76;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,25,14,19;MQ=60;FQ=184;PV4=0.46,1.3e-06,1,1 GT:PL:GQ 0/1:211,0,255:99 chr1 110466709 . T C 188 . DP=75;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,25,49;MQ=59;FQ=-250 GT:PL:GQ 1/1:221,223,0:99 chr1 110466810 . C A 13.2 . DP=13;VDB=0.0116;AF1=0.5;AC1=1;DP4=1,8,0,2;MQ=60;FQ=16.1;PV4=1,1,1,0.48 GT:PL:GQ 0/1:43,0,189:46 chr1 110467745 . A G 222 . DP=20;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,17,3;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr1 110558276 . A AC 104 . INDEL;DP=11;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-67.5 GT:PL:GQ 1/1:145,33,0:63 chr1 110603286 . A G 13.2 . DP=16;VDB=0.0000;AF1=0.5;AC1=1;DP4=7,1,5,0;MQ=52;FQ=16.1;PV4=1,2.4e-06,0.00015,0.18 GT:PL:GQ 0/1:43,0,169:46 chr1 110709719 . T C 124 . DP=41;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,6;MQ=60;FQ=-63 GT:PL:GQ 1/1:157,36,0:69 chr1 110709720 . G A 100 . DP=41;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,5;MQ=60;FQ=-57 GT:PL:GQ 1/1:133,30,0:57 chr1 110716511 . C T 104 . DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,5,2;MQ=53;FQ=-48 GT:PL:GQ 1/1:137,21,0:39 chr1 110738296 . G A 222 . DP=55;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,17;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 110740273 . G T 77 . DP=9;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:110,27,0:51 chr1 110740688 . C T 184 . DP=49;VDB=0.0118;AF1=1;AC1=2;DP4=1,0,37,11;MQ=60;FQ=-140;PV4=1,0.002,1,1 GT:PL:GQ 1/1:217,113,0:99 chr1 110765535 . C G 66.1 . DP=6;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,5,1;MQ=60;FQ=-45 GT:PL:GQ 1/1:99,18,0:33 chr1 110882444 . A G 171 . DP=52;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,8,13,12;MQ=60;FQ=174;PV4=0.39,3.1e-07,0.17,1 GT:PL:GQ 0/1:201,0,255:99 chr1 110949720 . C T 225 . DP=44;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,18,7,14;MQ=60;FQ=225;PV4=0.31,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 110950439 . C T 163 . DP=84;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,28,19,19;MQ=59;FQ=166;PV4=0.28,1.5e-13,0.061,1 GT:PL:GQ 0/1:193,0,255:99 chr1 110998854 . G A 133 . DP=42;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,4,17,4;MQ=59;FQ=136;PV4=1,1e-08,1,0.025 GT:PL:GQ 0/1:163,0,255:99 chr1 111059812 . cgagagagagagagagaga cgagagagagagagaga 19.5 . INDEL;DP=20;VDB=0.0008;AF1=0.5;AC1=1;DP4=15,1,3,0;MQ=60;FQ=22.5;PV4=1,2.8e-13,1,1 GT:PL:GQ 0/1:57,0,255:60 chr1 111060752 . C T 225 . DP=49;VDB=0.0398;AF1=0.5;AC1=1;DP4=15,10,8,16;MQ=60;FQ=225;PV4=0.088,0.14,1,0.27 GT:PL:GQ 0/1:255,0,255:99 chr1 111136611 . G A 225 . DP=47;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,17,9,12;MQ=60;FQ=225;PV4=0.55,0.06,1,0.085 GT:PL:GQ 0/1:255,0,255:99 chr1 111144526 . T G 6.02 . DP=2;VDB=0.0178;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr1 111144661 . A G 167 . DP=29;VDB=0.0398;AF1=0.5;AC1=1;DP4=11,6,6,5;MQ=59;FQ=170;PV4=0.7,0.093,0.11,0.021 GT:PL:GQ 0/1:197,0,255:99 chr1 111437129 . A C 53 . DP=8;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:86,24,0:45 chr1 111441829 . C T 185 . DP=82;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,31,49;MQ=60;FQ=-268 GT:PL:GQ 1/1:218,241,0:99 chr1 111492807 . G A 12.3 . DP=8;VDB=0.0110;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=15.1;PV4=1,0.00032,1,1 GT:PL:GQ 0/1:42,0,99:44 chr1 111770423 . T G 62 . DP=22;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,6,2,9;MQ=60;FQ=65;PV4=0.36,6.2e-11,1,1 GT:PL:GQ 0/1:92,0,224:95 chr1 111778241 . C T 109 . DP=19;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,18,1;MQ=60;FQ=-84 GT:PL:GQ 1/1:142,57,0:99 chr1 111778468 . G A 71 . DP=88;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,25,20,29;MQ=60;FQ=74;PV4=0.5,2.8e-44,1,1 GT:PL:GQ 0/1:101,0,255:99 chr1 111778824 . T C 19.1 . DP=10;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,6,0,4;MQ=60;FQ=22;PV4=1,2.1e-05,1,1 GT:PL:GQ 0/1:49,0,120:52 chr1 111783982 . C T 211 . DP=34;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,6,10,5;MQ=59;FQ=214;PV4=1,1,1,0.29 GT:PL:GQ 0/1:241,0,254:99 chr1 111783996 . A G 222 . DP=39;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,14;MQ=59;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 111784148 . T G 222 . DP=16;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,3,13;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 111784816 . G A 82 . DP=31;VDB=0.0398;AF1=0.5;AC1=1;DP4=8,7,12,3;MQ=60;FQ=85;PV4=0.25,9e-14,1,1 GT:PL:GQ 0/1:112,0,255:99 chr1 111785929 . C A 78 . DP=13;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,7,0,5;MQ=60;FQ=76.9;PV4=1,1,1,1 GT:PL:GQ 0/1:108,0,106:99 chr1 111785930 . T C 76 . DP=13;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,5,1,7;MQ=60;FQ=76.5;PV4=1,2.7e-05,1,0.36 GT:PL:GQ 0/1:106,0,107:99 chr1 111825883 . T C 3.54 . DP=6;VDB=0.0030;AF1=0.4998;AC1=1;DP4=1,2,3,0;MQ=53;FQ=5.47;PV4=0.4,0.00024,1,0.15 GT:PL:GQ 0/1:31,0,83:30 chr1 111826023 . C G 78 . DP=28;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,10,1,13;MQ=36;FQ=81;PV4=0.33,3.9e-09,1,0.21 GT:PL:GQ 0/1:108,0,182:99 chr1 111833441 . G A 225 . DP=45;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,10,16,8;MQ=58;FQ=225;PV4=0.37,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 111833488 . cctc cCTctc 217 . INDEL;DP=43;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,16,6,11;MQ=58;FQ=217;PV4=1,0.084,0.49,0.0078 GT:PL:GQ 0/1:255,0,255:99 chr1 111833517 . G A 75 . DP=35;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,15,2,10;MQ=59;FQ=78;PV4=0.43,6.5e-07,1,1 GT:PL:GQ 0/1:105,0,255:99 chr1 111854207 . T C 95 . DP=70;VDB=0.0140;AF1=0.5;AC1=1;DP4=33,11,20,5;MQ=59;FQ=98;PV4=0.77,1.3e-17,1,1 GT:PL:GQ 0/1:125,0,255:99 chr1 111854223 . C T 225 . DP=83;VDB=0.0216;AF1=0.5;AC1=1;DP4=37,13,26,7;MQ=59;FQ=225;PV4=0.79,0.027,1,0.33 GT:PL:GQ 0/1:255,0,255:99 chr1 111857087 . C T 203 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,2,14,2;MQ=60;FQ=160;PV4=0.63,1,1,1 GT:PL:GQ 0/1:233,0,187:99 chr1 111857154 . T C 117 . DP=42;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,5,14,10;MQ=60;FQ=120;PV4=0.74,2.4e-14,1,1 GT:PL:GQ 0/1:147,0,243:99 chr1 111858444 . C T 161 . DP=77;VDB=0.0271;AF1=0.5;AC1=1;DP4=26,13,18,18;MQ=57;FQ=164;PV4=0.17,2.1e-27,0.00014,1 GT:PL:GQ 0/1:191,0,255:99 chr1 111858499 . A G 138 . DP=53;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,24,3,12;MQ=55;FQ=141;PV4=0.51,1,5.5e-11,1 GT:PL:GQ 0/1:168,0,255:99 chr1 111861714 . T A 44 . DP=73;VDB=0.0164;AF1=0.5;AC1=1;DP4=36,11,19,5;MQ=59;FQ=47;PV4=1,2.9e-26,1,1 GT:PL:GQ 0/1:74,0,255:77 chr1 111861841 . A G 225 . DP=87;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,31,20,22;MQ=59;FQ=225;PV4=0.13,0.16,0.48,0.24 GT:PL:GQ 0/1:255,0,255:99 chr1 111861974 . T C 122 . DP=57;VDB=0.0398;AF1=0.5;AC1=1;DP4=8,19,10,19;MQ=60;FQ=125;PV4=0.78,1.5e-18,1,1 GT:PL:GQ 0/1:152,0,255:99 chr1 111862952 . T G 181 . DP=54;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,8,17,10;MQ=60;FQ=184;PV4=1,3.2e-09,1,0.37 GT:PL:GQ 0/1:211,0,255:99 chr1 112106342 . C T 222 . DP=29;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,26,3;MQ=60;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 112106444 . G A 222 . DP=59;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,24,34;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 112251983 . C G 225 . DP=123;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,41,17,53;MQ=60;FQ=225;PV4=0.5,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 112269872 . G A 213 . DP=114;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,76,30;MQ=60;FQ=-282 GT:PL:GQ 1/1:246,255,0:99 chr1 112525142 . C T 165 . DP=93;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,24,20,20;MQ=60;FQ=168;PV4=1,1.4e-21,1,1 GT:PL:GQ 0/1:195,0,255:99 chr1 112991698 . T C 108 . DP=39;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,13,9,8;MQ=60;FQ=111;PV4=0.53,7.2e-16,1,0.21 GT:PL:GQ 0/1:138,0,255:99 chr1 112991862 . G T 22 . DP=9;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,3,1,4;MQ=60;FQ=25;PV4=1,4e-06,1,1 GT:PL:GQ 0/1:52,0,102:55 chr1 112999227 . G A 171 . DP=49;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,22,25;MQ=60;FQ=-168 GT:PL:GQ 1/1:204,141,0:99 chr1 113063125 . A G 118 . DP=61;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,25,12,11;MQ=60;FQ=121;PV4=0.19,3.1e-12,1,1 GT:PL:GQ 0/1:148,0,255:99 chr1 113068577 . C T 225 . DP=101;VDB=0.0380;AF1=0.5;AC1=1;DP4=32,14,38,15;MQ=60;FQ=225;PV4=0.83,0.44,1,0.33 GT:PL:GQ 0/1:255,0,255:99 chr1 113083439 . C T 30 . DP=20;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,3,6,2;MQ=60;FQ=33;PV4=1,7.3e-13,1,0.39 GT:PL:GQ 0/1:60,0,234:63 chr1 113113938 . G A 96 . DP=26;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,9,4,8;MQ=59;FQ=99;PV4=1,9.8e-08,1,1 GT:PL:GQ 0/1:126,0,237:99 chr1 113140583 . T C 33 . DP=16;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,0,3,0;MQ=60;FQ=36;PV4=1,1,1,1 GT:PL:GQ 0/1:63,0,171:66 chr1 113197203 . A G 73 . DP=80;VDB=0.0392;AF1=0.5;AC1=1;DP4=27,27,13,13;MQ=60;FQ=76;PV4=1,2e-32,1,1 GT:PL:GQ 0/1:103,0,255:99 chr1 113202417 . G A 71 . DP=27;VDB=0.0373;AF1=0.5;AC1=1;DP4=11,9,5,1;MQ=60;FQ=74;PV4=0.35,0.39,1,1 GT:PL:GQ 0/1:101,0,255:99 chr1 113234456 . G A 225 . DP=71;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,19,18,24;MQ=60;FQ=225;PV4=0.46,0.4,1,0.28 GT:PL:GQ 0/1:255,0,255:99 chr1 113236681 . C T 216 . DP=46;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,0,14,7;MQ=60;FQ=148;PV4=0.0086,0.00049,1,1 GT:PL:GQ 0/1:246,0,175:99 chr1 113237171 . A G 70 . DP=32;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,6,11,3;MQ=59;FQ=73;PV4=0.43,1.1e-13,1,0.2 GT:PL:GQ 0/1:100,0,255:99 chr1 113238201 . T C 127 . DP=41;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,19,4,16;MQ=60;FQ=130;PV4=0.41,3e-10,1,0.27 GT:PL:GQ 0/1:157,0,229:99 chr1 113239382 . G A 99 . DP=42;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,14,3,12;MQ=60;FQ=102;PV4=0.18,1.5e-11,1,1 GT:PL:GQ 0/1:129,0,255:99 chr1 113239478 . T C 118 . DP=7;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:151,21,0:39 chr1 113241052 . T C 64 . DP=60;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,32,3,16;MQ=60;FQ=67;PV4=1,8.2e-13,1,0.32 GT:PL:GQ 0/1:94,0,255:97 chr1 113242488 . C T 142 . DP=110;VDB=0.0345;AF1=0.5;AC1=1;DP4=28,29,28,25;MQ=59;FQ=145;PV4=0.71,1.2e-38,1,0.33 GT:PL:GQ 0/1:172,0,255:99 chr1 113243048 . C T 178 . DP=69;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,10,11,21;MQ=59;FQ=181;PV4=0.0063,2.6e-11,0.49,1 GT:PL:GQ 0/1:208,0,255:99 chr1 113244433 . T C 76 . DP=19;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,17;MQ=60;FQ=-81 GT:PL:GQ 1/1:109,54,0:99 chr1 113247898 . G A 104 . DP=19;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,6,4,8;MQ=60;FQ=80;PV4=0.25,3.9e-05,1,0.044 GT:PL:GQ 0/1:134,0,107:99 chr1 113255389 . C T 20.8 . DP=2;VDB=0.0176;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:52,6,0:10 chr1 113255456 . C A 66 . DP=12;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,0,6,2;MQ=60;FQ=58.6;PV4=0.52,8.9e-07,1,0.19 GT:PL:GQ 0/1:96,0,86:89 chr1 113264930 . C G 46 . DP=23;VDB=0.0373;AF1=0.5;AC1=1;DP4=3,10,1,7;MQ=60;FQ=49;PV4=1,6.4e-06,1,0.39 GT:PL:GQ 0/1:76,0,230:79 chr1 113616382 . GAA GAAA 53.4 . INDEL;DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:93,9,0:16 chr1 113636924 . T C 56.1 . DP=7;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:89,21,0:39 chr1 113657092 . A C 187 . DP=71;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,56,13;MQ=60;FQ=-235 GT:PL:GQ 1/1:220,208,0:99 chr1 113658887 . G A 5.46 . DP=30;VDB=0.0345;AF1=0.4999;AC1=1;DP4=20,1,5,1;MQ=60;FQ=7.8;PV4=0.4,2e-13,1,0.3 GT:PL:GQ 0/1:34,0,213:34 chr1 113659065 . ACTCT ACT 217 . INDEL;DP=85;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,31,11,26;MQ=59;FQ=217;PV4=0.82,1.8e-05,0.071,0.31 GT:PL:GQ 0/1:255,0,255:99 chr1 114092306 . A G 12.3 . DP=15;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,10,0,5;MQ=57;FQ=15.1;PV4=1,8.4e-09,0.31,1 GT:PL:GQ 0/1:42,0,169:44 chr1 114137013 . CAT CATAT 111 . INDEL;DP=3;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:151,9,0:16 chr1 114189067 . G T 91 . DP=27;VDB=0.0271;AF1=0.5;AC1=1;DP4=15,1,7,4;MQ=60;FQ=94;PV4=0.13,1.2e-12,1,1 GT:PL:GQ 0/1:121,0,211:99 chr1 114191994 . G A 225 . DP=95;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,39,15,30;MQ=60;FQ=225;PV4=0.25,0.27,1,0.42 GT:PL:GQ 0/1:255,0,255:99 chr1 114240319 . TA TAA 214 . INDEL;DP=72;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,39,32;MQ=60;FQ=-249 GT:PL:GQ 1/1:255,214,0:99 chr1 114249382 . C T 107 . DP=40;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,2,33;MQ=59;FQ=-132 GT:PL:GQ 1/1:140,105,0:99 chr1 114255828 . T C 46 . DP=29;VDB=0.0033;AF1=0.5;AC1=1;DP4=16,1,12,0;MQ=60;FQ=49;PV4=1,1.2e-15,1,0.38 GT:PL:GQ 0/1:76,0,215:79 chr1 114267347 . C T 222 . DP=40;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,37,3;MQ=59;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 114280717 . A C 30 . DP=35;VDB=0.0400;AF1=0.5;AC1=1;DP4=20,1,12,2;MQ=60;FQ=33;PV4=0.55,1.3e-25,1,0.11 GT:PL:GQ 0/1:60,0,222:63 chr1 114280856 . T C 225 . DP=85;VDB=0.0322;AF1=0.5;AC1=1;DP4=20,29,14,22;MQ=60;FQ=225;PV4=1,0.11,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 114339956 . CTAA CTAAATAA 214 . INDEL;DP=18;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,16,2;MQ=53;FQ=-88.5 GT:PL:GQ 1/1:255,54,0:99 chr1 114354654 . T C 28 . DP=16;VDB=0.0373;AF1=0.5;AC1=1;DP4=5,5,2,2;MQ=60;FQ=31;PV4=1,0.0022,1,0.24 GT:PL:GQ 0/1:58,0,225:61 chr1 114354942 . T G 225 . DP=119;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,35,16,42;MQ=60;FQ=225;PV4=0.42,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 114372214 . C G 133 . DP=30;VDB=0.0373;AF1=0.5;AC1=1;DP4=11,3,9,6;MQ=60;FQ=136;PV4=0.43,6e-05,1,0.17 GT:PL:GQ 0/1:163,0,218:99 chr1 114372528 . T G 35 . DP=9;VDB=0.0025;AF1=0.5;AC1=1;DP4=2,1,5,1;MQ=60;FQ=37.9;PV4=1,0.00012,1,1 GT:PL:GQ 0/1:65,0,81:68 chr1 114377093 . A G 127 . DP=37;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,4,31;MQ=59;FQ=-132 GT:PL:GQ 1/1:160,105,0:99 chr1 114377148 . T C 47 . DP=13;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,3,0,9;MQ=60;FQ=31.9;PV4=1,3.6e-06,1,1 GT:PL:GQ 0/1:77,0,59:62 chr1 114377568 . A G 222 . DP=43;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,27;MQ=59;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 114397308 . C T 29 . DP=17;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,8,0,9;MQ=60;FQ=32;PV4=1,5.3e-11,1,1 GT:PL:GQ 0/1:59,0,144:62 chr1 114423653 . C T 20 . DP=26;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,3,8,1;MQ=60;FQ=23;PV4=1,8e-11,1,1 GT:PL:GQ 0/1:50,0,249:53 chr1 114424601 . C T 171 . DP=38;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,22;MQ=60;FQ=-132 GT:PL:GQ 1/1:204,105,0:99 chr1 114429340 . T C 136 . DP=89;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,39,7,33;MQ=59;FQ=139;PV4=0.79,2.3e-32,1,1 GT:PL:GQ 0/1:166,0,255:99 chr1 114438951 . A G 134 . DP=96;VDB=0.0322;AF1=0.5;AC1=1;DP4=35,17,26,17;MQ=60;FQ=137;PV4=0.52,1.7e-35,1,1 GT:PL:GQ 0/1:164,0,255:99 chr1 114443035 . C G 69 . DP=24;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,15,1,5;MQ=60;FQ=72;PV4=1,0.3,1,0.43 GT:PL:GQ 0/1:99,0,248:99 chr1 114443899 . G A 225 . DP=118;VDB=0.0322;AF1=0.5;AC1=1;DP4=24,21,43,27;MQ=60;FQ=225;PV4=0.44,0.092,0.21,1 GT:PL:GQ 0/1:255,0,255:99 chr1 114483908 . A G 162 . DP=111;VDB=0.0365;AF1=0.5;AC1=1;DP4=31,30,23,26;MQ=60;FQ=165;PV4=0.71,2.1e-28,1,0.43 GT:PL:GQ 0/1:192,0,255:99 chr1 114512939 . A T 172 . DP=14;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,14;MQ=60;FQ=-69 GT:PL:GQ 1/1:205,42,0:81 chr1 114515717 . G A 225 . DP=70;VDB=0.0345;AF1=0.5;AC1=1;DP4=20,17,18,14;MQ=59;FQ=225;PV4=1,0.3,0.029,1 GT:PL:GQ 0/1:255,0,255:99 chr1 114523465 . A G 135 . DP=10;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:168,21,0:39 chr1 114524169 . C T 183 . DP=64;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,17,15,23;MQ=59;FQ=186;PV4=0.8,4.6e-14,1,0.48 GT:PL:GQ 0/1:213,0,255:99 chr1 114634485 . T C 6.17 . DP=3;VDB=0.0050;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:37,9,0:10 chr1 114641685 . A G 103 . DP=19;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,0;MQ=60;FQ=-78 GT:PL:GQ 1/1:136,51,0:99 chr1 114680540 . C T 175 . DP=194;VDB=0.0400;AF1=0.5;AC1=1;DP4=44,60,39,43;MQ=59;FQ=178;PV4=0.55,8.5e-44,1,0.47 GT:PL:GQ 0/1:205,0,255:99 chr1 114940632 . CAAAAAAAAAAAA CAAAAAAAAAAA,CAAAAAAAAAA 24.5 . INDEL;DP=28;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,6,18;MQ=60;FQ=-101 GT:PL:GQ 1/1:65,66,0,62,38,56:87 chr1 114948281 . A G 222 . DP=199;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,95,93;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 114963113 . A G 98 . DP=77;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,35,6,33;MQ=59;FQ=101;PV4=0.11,8.9e-39,1,0.2 GT:PL:GQ 0/1:128,0,222:99 chr1 114973429 . T C 153 . DP=49;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,13,15,11;MQ=60;FQ=156;PV4=0.4,3.1e-20,1,1 GT:PL:GQ 0/1:183,0,255:99 chr1 114976224 . A C 118 . DP=32;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,4,12,4;MQ=60;FQ=121;PV4=1,2.5e-13,1,1 GT:PL:GQ 0/1:148,0,253:99 chr1 115005658 . TAAGAAGAAGAA TAAGAAGAA 120 . INDEL;DP=18;VDB=0.0006;AF1=0.5;AC1=1;DP4=9,0,9,0;MQ=50;FQ=123;PV4=1,0.0092,3.7e-05,0.3 GT:PL:GQ 0/1:158,0,248:99 chr1 115128087 . A G 41 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:73,9,0:16 chr1 115143052 . CTTAT CTTATTAT 173 . INDEL;DP=11;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,3,1,5;MQ=55;FQ=52.5;PV4=1,1,0.16,1 GT:PL:GQ 0/1:211,0,87:90 chr1 115144304 . C T 98 . DP=13;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,6,0,6;MQ=60;FQ=101;PV4=1,1,1,1 GT:PL:GQ 0/1:128,0,153:99 chr1 115144703 . A G 222 . DP=171;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,123,41;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 115161140 . C T 35 . DP=7;VDB=0.0040;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=38;PV4=1,0.23,1,0.29 GT:PL:GQ 0/1:65,0,93:68 chr1 115164659 . G C 63 . DP=64;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,30,6,19;MQ=59;FQ=66;PV4=0.75,5.7e-31,0.041,1 GT:PL:GQ 0/1:93,0,255:96 chr1 115168440 . T G 225 . DP=139;VDB=0.0380;AF1=0.5;AC1=1;DP4=38,33,32,33;MQ=60;FQ=225;PV4=0.73,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 115168600 . A T 150 . DP=69;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,21,8,27;MQ=60;FQ=153;PV4=0.29,6.9e-29,0.17,0.0034 GT:PL:GQ 0/1:180,0,255:99 chr1 115222169 . G C 122 . DP=36;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,5,11,4;MQ=60;FQ=125;PV4=1,3.4e-13,1,0.069 GT:PL:GQ 0/1:152,0,255:99 chr1 115222237 . T A 103 . DP=64;VDB=0.0400;AF1=0.5;AC1=1;DP4=18,16,13,14;MQ=60;FQ=106;PV4=0.8,2e-20,1,1 GT:PL:GQ 0/1:133,0,255:99 chr1 115222434 . G A 123 . DP=6;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:156,18,0:33 chr1 115256669 . G A 54 . DP=5;VDB=0.0177;AF1=0.5;AC1=1;DP4=0,2,1,2;MQ=60;FQ=29;PV4=1,0.23,1,1 GT:PL:GQ 0/1:84,0,56:59 chr1 115280605 . A C 187 . DP=163;VDB=0.0392;AF1=0.5;AC1=1;DP4=37,27,47,43;MQ=60;FQ=190;PV4=0.52,1.5e-45,1,1 GT:PL:GQ 0/1:217,0,255:99 chr1 115284056 . G T 222 . DP=57;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,46,9;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 115398044 . GCCCCCCC GCCCCCC 60.5 . INDEL;DP=19;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,14,5;MQ=60;FQ=-91.5 GT:PL:GQ 1/1:101,57,0:99 chr1 115399940 . T G 15.1 . DP=16;VDB=0.0099;AF1=0.5;AC1=1;DP4=5,6,1,4;MQ=59;FQ=18.1;PV4=0.59,4.1e-10,1,0.42 GT:PL:GQ 0/1:45,0,250:48 chr1 115420905 . T C 55 . DP=20;VDB=0.0066;AF1=0.5;AC1=1;DP4=3,8,3,6;MQ=60;FQ=58;PV4=1,3.5e-13,1,0.013 GT:PL:GQ 0/1:85,0,237:88 chr1 115437986 . G A 225 . DP=35;VDB=0.0164;AF1=0.5;AC1=1;DP4=10,6,11,8;MQ=60;FQ=225;PV4=1,0.41,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 115576023 . A G 222 . DP=79;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,55,22;MQ=60;FQ=-259 GT:PL:GQ 1/1:255,232,0:99 chr1 115601615 . A G 189 . DP=54;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,45;MQ=60;FQ=-181 GT:PL:GQ 1/1:222,154,0:99 chr1 115631924 . C T 83 . DP=11;VDB=0.0325;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:116,24,0:45 chr1 115829313 . G A 222 . DP=108;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,62,40;MQ=60;FQ=-282;PV4=1,1,1,0.24 GT:PL:GQ 1/1:255,255,0:99 chr1 116224925 . G A 204 . DP=37;VDB=0.0140;AF1=0.5;AC1=1;DP4=15,2,18,2;MQ=60;FQ=198;PV4=1,0.32,1,1 GT:PL:GQ 0/1:234,0,226:99 chr1 116224940 . C A 207 . DP=46;VDB=0.0190;AF1=0.5;AC1=1;DP4=20,4,20,2;MQ=60;FQ=210;PV4=0.67,1,1,1 GT:PL:GQ 0/1:237,0,255:99 chr1 116225180 . A C 151 . DP=39;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,20,0,19;MQ=59;FQ=151;PV4=1,0.45,1,1 GT:PL:GQ 0/1:181,0,181:99 chr1 116228220 . C T 43 . DP=9;VDB=0.0030;AF1=0.5;AC1=1;DP4=0,6,0,3;MQ=60;FQ=46;PV4=1,1,1,1 GT:PL:GQ 0/1:73,0,125:76 chr1 116245809 . C T 102 . DP=7;VDB=0.0008;AF1=0.5263;AC1=1;DP4=0,1,0,6;MQ=60;FQ=-17.1;PV4=1,1,1,1 GT:PL:GQ 0/1:132,0,10:13 chr1 116247790 . G A 16.1 . DP=15;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,1,6,0;MQ=58;FQ=19.1;PV4=1,0.0008,1,0.058 GT:PL:GQ 0/1:46,0,124:49 chr1 116260532 . A T 90 . DP=37;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,13,4,10;MQ=60;FQ=93;PV4=0.49,3.5e-10,1,1 GT:PL:GQ 0/1:120,0,255:99 chr1 116260604 . G A 6.2 . DP=20;VDB=0.0066;AF1=0.4999;AC1=1;DP4=0,12,3,3;MQ=60;FQ=8.65;PV4=0.025,1.3e-05,1,0.13 GT:PL:GQ 0/1:35,0,170:36 chr1 116283343 . A G 222 . DP=49;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,31,17;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 116283526 . G A 77 . DP=16;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,15;MQ=58;FQ=-72 GT:PL:GQ 1/1:110,45,0:87 chr1 116287682 . T C 26.8 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:58,6,0:10 chr1 116311198 . T C 113 . DP=16;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:146,45,0:87 chr1 116534852 . C T 222 . DP=35;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,24;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 116569530 . G C 211 . DP=12;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,10,2;MQ=58;FQ=-63 GT:PL:GQ 1/1:244,36,0:69 chr1 116577981 . G A 222 . DP=24;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,2,22;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 116609126 . TCCCC TCCC 205 . INDEL;DP=43;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,27,15;MQ=60;FQ=-161 GT:PL:GQ 1/1:246,126,0:99 chr1 116655272 . C T 171 . DP=89;VDB=0.0365;AF1=0.5;AC1=1;DP4=29,19,25,16;MQ=60;FQ=174;PV4=1,5.3e-31,1,1 GT:PL:GQ 0/1:201,0,255:99 chr1 117121865 . G A 80 . DP=21;VDB=0.0053;AF1=0.5;AC1=1;DP4=13,0,6,0;MQ=59;FQ=83;PV4=1,1,1,1 GT:PL:GQ 0/1:110,0,167:99 chr1 117122285 . gtc gTCCtc 214 . INDEL;DP=63;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,9,30;MQ=57;FQ=-115;PV4=1,1,0.36,0.3 GT:PL:GQ 1/1:255,80,0:99 chr1 117236913 . T C 99 . DP=72;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,29,5,27;MQ=59;FQ=102;PV4=0.27,2.5e-29,0.056,1 GT:PL:GQ 0/1:129,0,255:99 chr1 117236970 . G C 99 . DP=15;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,13;MQ=60;FQ=-69 GT:PL:GQ 1/1:132,42,0:81 chr1 117311147 . C A 108 . DP=95;VDB=0.0345;AF1=0.5;AC1=1;DP4=30,25,25,15;MQ=60;FQ=111;PV4=0.53,4.1e-31,1,1 GT:PL:GQ 0/1:138,0,255:99 chr1 117554421 . A G 213 . DP=53;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,39,13;MQ=60;FQ=-184 GT:PL:GQ 1/1:246,157,0:99 chr1 117559726 . A G 222 . DP=82;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,50,29;MQ=59;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr1 117576389 . T C 57 . DP=21;VDB=0.0066;AF1=0.5;AC1=1;DP4=8,1,10,2;MQ=60;FQ=60;PV4=1,9.7e-06,1,1 GT:PL:GQ 0/1:87,0,154:90 chr1 117602960 . C A 175 . DP=60;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,44,15;MQ=60;FQ=-205 GT:PL:GQ 1/1:208,178,0:99 chr1 117603188 . G T 78 . DP=14;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,13;MQ=60;FQ=-69 GT:PL:GQ 1/1:111,42,0:81 chr1 117617705 . A G 147 . DP=119;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,55,58;MQ=60;FQ=-282 GT:PL:GQ 1/1:180,255,0:99 chr1 117618067 . C T 222 . DP=57;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,15,42;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr1 117618722 . T C 38.8 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:70,6,0:10 chr1 117622286 . A G 222 . DP=101;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,22,71;MQ=59;FQ=-281;PV4=1,0.27,1,0.25 GT:PL:GQ 1/1:255,254,0:99 chr1 117631391 . T C 196 . DP=50;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,39,11;MQ=59;FQ=-178 GT:PL:GQ 1/1:229,151,0:99 chr1 117635401 . G A 71 . DP=34;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,8,10,5;MQ=60;FQ=74;PV4=0.73,6.4e-17,1,0.29 GT:PL:GQ 0/1:101,0,255:99 chr1 117656088 . A G 122 . DP=10;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,2,2,4;MQ=60;FQ=87;PV4=1,0.012,1,1 GT:PL:GQ 0/1:152,0,114:99 chr1 117660608 . C T 39.3 . DP=5;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:72,15,0:27 chr1 117660754 . C T 225 . DP=64;VDB=0.0298;AF1=0.5;AC1=1;DP4=25,8,24,7;MQ=60;FQ=225;PV4=1,1,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr1 117663913 . C T 8.64 . DP=5;VDB=0.0225;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=11.3;PV4=1,0.0026,1,0.16 GT:PL:GQ 0/1:38,0,55:40 chr1 117690272 . G A 188 . DP=25;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,18,5;MQ=58;FQ=-96 GT:PL:GQ 1/1:221,69,0:99 chr1 117944732 . C A 4.13 . DP=3;VDB=0.0141;AF1=0.5;AC1=1;DP4=1,0,2,0;MQ=60;FQ=4.13;PV4=1,0.015,1,0.35 GT:PL:GQ 0/1:32,0,32:31 chr1 117957288 . A G 36.5 . DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:69,12,0:21 chr1 117957505 . A G 81 . DP=41;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,22,3,12;MQ=59;FQ=84;PV4=0.65,9.4e-12,0.36,1 GT:PL:GQ 0/1:111,0,255:99 chr1 118065841 . A G 140 . DP=89;VDB=0.0392;AF1=0.5;AC1=1;DP4=24,23,18,20;MQ=59;FQ=143;PV4=0.83,9.9e-23,0.44,1 GT:PL:GQ 0/1:170,0,255:99 chr1 118165691 . C T 222 . DP=78;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,28,47;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr1 118320859 . T A 82 . DP=12;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,10,2;MQ=25;FQ=-63 GT:PL:GQ 1/1:115,36,0:69 chr1 118482015 . G A 21 . DP=7;VDB=0.0011;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=53;FQ=24;PV4=1,7.3e-05,1,1 GT:PL:GQ 0/1:51,0,74:54 chr1 118623681 . Tacacacacacacacacacacacacacacacac Tacacacacacacacacacacacacacacac 94.5 . INDEL;DP=13;VDB=0.0066;AF1=0.5;AC1=1;DP4=7,0,6,0;MQ=60;FQ=97.5;PV4=1,0.16,1,1 GT:PL:GQ 0/1:132,0,182:99 chr1 119427454 . G A 161 . DP=38;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,4,15,11;MQ=60;FQ=163;PV4=1,8.1e-10,1,0.33 GT:PL:GQ 0/1:191,0,195:99 chr1 119466275 . A G 222 . DP=18;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,5,13;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr1 119683063 . G A 50.1 . DP=8;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-48 GT:PL:GQ 1/1:83,21,0:39 chr1 120165826 . C T 222 . DP=30;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,6,23;MQ=59;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 120166681 . G A 222 . DP=84;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,42,36;MQ=60;FQ=-262 GT:PL:GQ 1/1:255,235,0:99 chr1 120267431 . G A 152 . DP=62;VDB=0.0271;AF1=0.5;AC1=1;DP4=15,8,28,10;MQ=59;FQ=155;PV4=0.57,8.4e-15,1,1 GT:PL:GQ 0/1:182,0,255:99 chr1 120267505 . C G 225 . DP=63;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,25,10,17;MQ=59;FQ=225;PV4=0.59,1,0.21,0.49 GT:PL:GQ 0/1:255,0,255:99 chr1 120285546 . G A 225 . DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,5,26,7;MQ=60;FQ=212;PV4=0.73,0.17,1,1 GT:PL:GQ 0/1:255,0,239:99 chr1 120293367 . T C 96 . DP=65;VDB=0.0384;AF1=0.5;AC1=1;DP4=26,14,17,6;MQ=60;FQ=99;PV4=0.58,1.6e-22,1,0.43 GT:PL:GQ 0/1:126,0,255:99 chr1 120336785 . C T 110 . DP=63;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,21,15,11;MQ=59;FQ=113;PV4=0.31,4.4e-24,1,0.37 GT:PL:GQ 0/1:140,0,255:99 chr1 120336876 . T G 21 . DP=36;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,15,1,13;MQ=59;FQ=24;PV4=0.61,5.7e-14,0.13,1 GT:PL:GQ 0/1:51,0,243:54 chr1 120378678 . C T 44 . DP=58;VDB=0.0345;AF1=0.5;AC1=1;DP4=23,14,13,5;MQ=60;FQ=47;PV4=0.55,1.3e-22,1,0.26 GT:PL:GQ 0/1:74,0,255:77 chr1 120380008 . T A 114 . DP=27;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,14,0,10;MQ=60;FQ=117;PV4=0.27,1,1,1 GT:PL:GQ 0/1:144,0,238:99 chr1 120382906 . A G 225 . DP=48;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,20,3,24;MQ=60;FQ=181;PV4=0.62,1,0.19,0.18 GT:PL:GQ 0/1:255,0,208:99 chr1 120465262 . C T 225 . DP=47;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,11,8,11;MQ=59;FQ=225;PV4=0.37,1,0.12,1 GT:PL:GQ 0/1:255,0,255:99 chr1 120478285 . T C 222 . DP=21;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,3,18;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 120512104 . T C 48 . DP=13;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,12,0;MQ=58;FQ=-63 GT:PL:GQ 1/1:81,36,0:69 chr1 120539331 . C T 61 . DP=234;VDB=0.0298;AF1=0.5;AC1=1;DP4=71,83,37,39;MQ=55;FQ=64;PV4=0.78,1.8e-75,1.8e-05,1 GT:PL:GQ 0/1:91,0,255:94 chr1 120611715 . A G 60 . DP=31;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,18,2,6;MQ=50;FQ=63;PV4=0.65,0.038,0.31,1 GT:PL:GQ 0/1:90,0,249:93 chr1 120611758 . G A 80 . DP=22;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,9,1,10;MQ=53;FQ=83;PV4=1,0.011,0.026,1 GT:PL:GQ 0/1:110,0,176:99 chr1 120611830 . G A 60 . DP=16;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,5,3,2;MQ=44;FQ=63;PV4=1,0.22,1,1 GT:PL:GQ 0/1:90,0,191:93 chr1 120611876 . C T 65 . DP=18;VDB=0.0384;AF1=0.5;AC1=1;DP4=6,4,5,3;MQ=38;FQ=68;PV4=1,4.6e-05,1,1 GT:PL:GQ 0/1:95,0,150:98 chr1 120611964 . G C 30 . DP=16;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,9,2,3;MQ=42;FQ=33;PV4=0.55,1.6e-05,0.22,1 GT:PL:GQ 0/1:60,0,186:63 chr1 120612006 . G A 25 . DP=14;VDB=0.0014;AF1=0.5;AC1=1;DP4=3,4,2,2;MQ=46;FQ=28;PV4=1,3.4e-05,0.22,0.47 GT:PL:GQ 0/1:55,0,160:58 chr1 120612034 . T G 3.54 . DP=13;VDB=0.0161;AF1=0.4998;AC1=1;DP4=3,4,2,1;MQ=47;FQ=5.47;PV4=1,0.032,0.007,0.41 GT:PL:GQ 0/1:31,0,154:30 chr1 120612154 . C G 53 . DP=11;VDB=0.0359;AF1=0.5;AC1=1;DP4=1,4,2,3;MQ=41;FQ=56;PV4=1,0.002,0.074,1 GT:PL:GQ 0/1:83,0,115:86 chr1 120612163 . C A 54 . DP=11;VDB=0.0359;AF1=0.5;AC1=1;DP4=1,4,2,4;MQ=40;FQ=57;PV4=1,0.024,0.046,1 GT:PL:GQ 0/1:84,0,103:87 chr1 120612168 . C T 16.1 . DP=10;VDB=0.0049;AF1=0.5;AC1=1;DP4=2,5,1,1;MQ=38;FQ=19.1;PV4=1,1,1,0.26 GT:PL:GQ 0/1:46,0,149:49 chr1 120612265 . A G 31 . DP=3;VDB=0.0030;AF1=1;AC1=2;DP4=0,0,0,3;MQ=29;FQ=-36 GT:PL:GQ 1/1:63,9,0:16 chr1 121115786 . C A 8.64 . DP=33;VDB=0.0025;AF1=0.5;AC1=1;DP4=21,1,7,2;MQ=33;FQ=11.3;PV4=0.19,2.7e-12,0.17,1 GT:PL:GQ 0/1:38,0,167:40 chr1 121116121 . T C 3.54 . DP=10;VDB=0.0099;AF1=0.4998;AC1=1;DP4=0,8,0,2;MQ=32;FQ=5.47;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,97:30 chr1 121116678 . C T 53 . DP=51;VDB=0.0244;AF1=0.5;AC1=1;DP4=21,8,17,5;MQ=51;FQ=56;PV4=0.76,9.5e-26,1,1 GT:PL:GQ 0/1:83,0,255:86 chr1 121116688 . A G 225 . DP=65;VDB=0.0345;AF1=0.5;AC1=1;DP4=20,6,25,9;MQ=51;FQ=225;PV4=1,0.11,0.0066,1 GT:PL:GQ 0/1:255,0,255:99 chr1 121116933 . T C 63 . DP=8;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,3,1,2;MQ=57;FQ=47;PV4=1,1,0.19,1 GT:PL:GQ 0/1:93,0,74:77 chr1 121129557 . T C 4.77 . DP=6;VDB=0.0211;AF1=0.5;AC1=1;DP4=1,2,0,3;MQ=20;FQ=4.42;PV4=1,2.7e-05,1,0.19 GT:PL:GQ 0/1:33,0,32:32 chr1 144013853 . T C 18.1 . DP=62;VDB=0.0271;AF1=0.5;AC1=1;DP4=34,9,16,1;MQ=59;FQ=21;PV4=0.26,1.2e-08,0.011,0.43 GT:PL:GQ 0/1:48,0,255:51 chr1 144013865 . T G 74 . DP=74;VDB=0.0298;AF1=0.5;AC1=1;DP4=35,15,20,4;MQ=59;FQ=77;PV4=0.27,5.3e-22,0.019,1 GT:PL:GQ 0/1:104,0,255:99 chr1 144014051 . G A 212 . DP=56;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,26,5,16;MQ=60;FQ=215;PV4=1,0.026,0.11,1 GT:PL:GQ 0/1:242,0,255:99 chr1 144014068 . T C 225 . DP=44;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,7,7,26;MQ=59;FQ=81;PV4=1,0.052,0.31,0.48 GT:PL:GQ 0/1:255,0,108:99 chr1 144854491 . T G 46 . DP=13;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,3,3,2;MQ=60;FQ=49;PV4=1,2.6e-05,1,0.32 GT:PL:GQ 0/1:76,0,197:79 chr1 144854497 . A G 85 . DP=15;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,4,3,2;MQ=60;FQ=88;PV4=1,0.38,1,1 GT:PL:GQ 0/1:115,0,223:99 chr1 144854594 . G T 5.46 . DP=9;VDB=0.0181;AF1=0.4999;AC1=1;DP4=0,6,1,2;MQ=52;FQ=7.8;PV4=0.33,0.00064,3.1e-05,0.1 GT:PL:GQ 0/1:34,0,124:34 chr1 144854597 . T C 18.1 . DP=9;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,4,1,3;MQ=51;FQ=21;PV4=1,0.017,0.018,0.22 GT:PL:GQ 0/1:48,0,94:51 chr1 144859720 . G C 26.3 . DP=5;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,5,0;MQ=55;FQ=-42 GT:PL:GQ 1/1:59,15,0:27 chr1 144860026 . G C 187 . DP=31;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,13,2,14;MQ=59;FQ=186;PV4=1,0.44,0.17,1 GT:PL:GQ 0/1:217,0,215:99 chr1 144864208 . C A 4.77 . DP=25;VDB=0.0189;AF1=0.4999;AC1=1;DP4=18,4,2,1;MQ=55;FQ=6.99;PV4=0.5,0.49,0.015,0.39 GT:PL:GQ 0/1:33,0,255:33 chr1 144865850 . G T 83 . DP=73;VDB=0.0216;AF1=0.5;AC1=1;DP4=18,23,12,18;MQ=60;FQ=86;PV4=0.81,7.5e-37,0.12,1 GT:PL:GQ 0/1:113,0,255:99 chr1 144866509 . G A 91 . DP=31;VDB=0.0118;AF1=0.5;AC1=1;DP4=12,1,16,1;MQ=60;FQ=94;PV4=1,2.8e-10,1,1 GT:PL:GQ 0/1:121,0,186:99 chr1 144866643 . G A 152 . DP=171;VDB=0.0392;AF1=0.5;AC1=1;DP4=52,48,27,42;MQ=60;FQ=155;PV4=0.12,3.9e-36,1,0.13 GT:PL:GQ 0/1:182,0,255:99 chr1 144866662 . T C 154 . DP=170;VDB=0.0399;AF1=0.5;AC1=1;DP4=45,56,21,43;MQ=60;FQ=157;PV4=0.15,7.6e-35,1,1 GT:PL:GQ 0/1:184,0,255:99 chr1 144868170 . C T 111 . DP=23;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,13,0,10;MQ=59;FQ=114;PV4=1,0.29,1,0.35 GT:PL:GQ 0/1:141,0,159:99 chr1 144871738 . C A 70 . DP=23;VDB=0.0019;AF1=0.5;AC1=1;DP4=10,0,10,1;MQ=60;FQ=73;PV4=1,6.1e-11,1,0.094 GT:PL:GQ 0/1:100,0,158:99 chr1 144871755 . A T 187 . DP=27;VDB=0.0042;AF1=0.5;AC1=1;DP4=10,1,15,1;MQ=60;FQ=152;PV4=1,1,1,0.19 GT:PL:GQ 0/1:217,0,179:99 chr1 144871782 . A G 81 . DP=52;VDB=0.0298;AF1=0.5;AC1=1;DP4=19,3,23,4;MQ=60;FQ=84;PV4=1,1.4e-15,0.19,1 GT:PL:GQ 0/1:111,0,234:99 chr1 144871889 . A C 129 . DP=102;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,31,21,29;MQ=60;FQ=132;PV4=0.68,6e-34,1,1 GT:PL:GQ 0/1:159,0,255:99 chr1 144873818 . A G 10.4 . DP=9;VDB=0.0001;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=13.2;PV4=1,8.5e-07,1,0.11 GT:PL:GQ 0/1:40,0,98:42 chr1 144873840 . A G 51 . DP=23;VDB=0.0025;AF1=0.5;AC1=1;DP4=11,0,11,1;MQ=60;FQ=54;PV4=1,1.3e-09,1,0.49 GT:PL:GQ 0/1:81,0,152:84 chr1 144873887 . C T 106 . DP=70;VDB=0.0298;AF1=0.5;AC1=1;DP4=27,5,30,6;MQ=60;FQ=109;PV4=1,3.3e-31,0.17,1 GT:PL:GQ 0/1:136,0,255:99 chr1 144873962 . CT C 132 . INDEL;DP=123;VDB=0.0322;AF1=0.5;AC1=1;DP4=50,45,11,14;MQ=60;FQ=135;PV4=0.5,6.8e-06,1,1 GT:PL:GQ 0/1:170,0,255:99 chr1 144874038 . T C 116 . DP=70;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,28,9,27;MQ=59;FQ=119;PV4=0.56,3.8e-24,1,1 GT:PL:GQ 0/1:146,0,255:99 chr1 144874070 . C T 200 . DP=35;VDB=0.0011;AF1=0.5;AC1=1;DP4=1,17,2,14;MQ=59;FQ=185;PV4=0.59,1,0.47,1 GT:PL:GQ 0/1:230,0,212:99 chr1 144874088 . G C 4.13 . DP=18;VDB=0.0004;AF1=0.4998;AC1=1;DP4=0,9,0,6;MQ=58;FQ=6.2;PV4=1,2.7e-11,1,0.27 GT:PL:GQ 0/1:32,0,153:31 chr1 144874641 . G C 8.64 . DP=11;VDB=0.0066;AF1=0.5;AC1=1;DP4=5,0,4,0;MQ=57;FQ=11.3;PV4=1,0.017,1,0.47 GT:PL:GQ 0/1:38,0,101:40 chr1 144874760 . T C 113 . DP=67;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,24,11,11;MQ=59;FQ=116;PV4=0.8,2.7e-15,1,1 GT:PL:GQ 0/1:143,0,255:99 chr1 144874950 . G A 36 . DP=18;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,9,2,5;MQ=60;FQ=39;PV4=1,4e-10,1,0.44 GT:PL:GQ 0/1:66,0,218:69 chr1 144877176 . C T 38 . DP=20;VDB=0.0053;AF1=0.5;AC1=1;DP4=11,1,8,0;MQ=57;FQ=41;PV4=1,1.4e-10,0.0022,1 GT:PL:GQ 0/1:68,0,203:71 chr1 144877366 . A G 163 . DP=33;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,17,1,13;MQ=59;FQ=166;PV4=1,1,1,1 GT:PL:GQ 0/1:193,0,207:99 chr1 144877390 . G A 19.1 . DP=12;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,6,0,6;MQ=60;FQ=22;PV4=1,8.6e-10,1,0.24 GT:PL:GQ 0/1:49,0,129:52 chr1 144879264 . A G 108 . DP=62;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,13,19,20;MQ=60;FQ=111;PV4=0.16,2.4e-30,1,1 GT:PL:GQ 0/1:138,0,248:99 chr1 144879375 . T C 120 . DP=60;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,8,18,10;MQ=59;FQ=123;PV4=0.58,7.6e-28,1,0.44 GT:PL:GQ 0/1:150,0,255:99 chr1 144882581 . A G 56 . DP=14;VDB=0.0140;AF1=0.5;AC1=1;DP4=2,2,9,0;MQ=60;FQ=58.2;PV4=0.077,0.00074,1,1 GT:PL:GQ 0/1:86,0,93:88 chr1 144882823 . C T 158 . DP=251;VDB=0.0345;AF1=0.5;AC1=1;DP4=46,76,41,83;MQ=60;FQ=161;PV4=0.51,1.5e-97,1,1 GT:PL:GQ 0/1:188,0,255:99 chr1 144886063 . T C 56 . DP=25;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,4,9,2;MQ=60;FQ=59;PV4=0.66,2.2e-09,1,1 GT:PL:GQ 0/1:86,0,238:89 chr1 144886092 . C T 70 . DP=31;VDB=0.0384;AF1=0.5;AC1=1;DP4=13,4,11,3;MQ=60;FQ=73;PV4=1,2.1e-10,1,0.00054 GT:PL:GQ 0/1:100,0,255:99 chr1 144886197 . A T 118 . DP=48;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,10,10,7;MQ=60;FQ=121;PV4=0.76,4e-10,1,1 GT:PL:GQ 0/1:148,0,255:99 chr1 144890833 . T C 42 . DP=26;VDB=0.0042;AF1=0.5;AC1=1;DP4=16,0,9,0;MQ=60;FQ=45;PV4=1,2.6e-12,1,0.01 GT:PL:GQ 0/1:72,0,183:75 chr1 144892089 . G T 25 . DP=15;VDB=0.0042;AF1=0.5;AC1=1;DP4=6,0,9,0;MQ=47;FQ=28;PV4=1,7.2e-09,7.1e-05,1 GT:PL:GQ 0/1:55,0,115:58 chr1 144892149 . G A 225 . DP=48;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,1,21,7;MQ=57;FQ=162;PV4=0.12,0.16,0.031,1 GT:PL:GQ 0/1:255,0,189:99 chr1 144892368 . A T 17.1 . DP=35;VDB=0.0042;AF1=0.5;AC1=1;DP4=23,3,8,0;MQ=60;FQ=20.1;PV4=1,1.7e-06,1,0.37 GT:PL:GQ 0/1:47,0,255:50 chr1 144910082 . A G 81 . DP=32;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,2,29;MQ=59;FQ=-120 GT:PL:GQ 1/1:114,93,0:99 chr1 144912233 . C T 159 . DP=19;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,3,6,3;MQ=60;FQ=151;PV4=1,1,1,1 GT:PL:GQ 0/1:189,0,178:99 chr1 144915412 . T C 80 . DP=43;VDB=0.0322;AF1=0.5;AC1=1;DP4=28,5,8,1;MQ=60;FQ=83;PV4=1,0.43,1,1 GT:PL:GQ 0/1:110,0,255:99 chr1 144915561 . G A 225 . DP=44;VDB=0.0190;AF1=0.5;AC1=1;DP4=7,13,5,16;MQ=57;FQ=225;PV4=0.51,0.23,0.01,1 GT:PL:GQ 0/1:255,0,255:99 chr1 144915624 . G A 14.2 . DP=8;VDB=0.0030;AF1=0.5;AC1=1;DP4=0,5,0,3;MQ=51;FQ=17.1;PV4=1,1.6e-05,0,0.053 GT:PL:GQ 0/1:44,0,123:47 chr1 144916676 . C T 17.1 . DP=131;VDB=0.0393;AF1=0.5;AC1=1;DP4=41,58,13,14;MQ=60;FQ=20.1;PV4=0.66,1.2e-26,0.028,0.18 GT:PL:GQ 0/1:47,0,255:50 chr1 144916748 . C G 225 . DP=72;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,33,4,27;MQ=60;FQ=225;PV4=0.75,0.39,0.13,0.45 GT:PL:GQ 0/1:255,0,255:99 chr1 144917546 . A G 112 . DP=43;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,11,9,16;MQ=60;FQ=115;PV4=1,3.4e-19,1,0.4 GT:PL:GQ 0/1:142,0,252:99 chr1 144917841 . T C 84 . DP=14;VDB=0.0033;AF1=0.5;AC1=1;DP4=8,0,6,0;MQ=55;FQ=87;PV4=1,0.42,1,0.32 GT:PL:GQ 0/1:114,0,142:99 chr1 144918034 . A G 5.46 . DP=15;VDB=0.0127;AF1=0.4999;AC1=1;DP4=0,12,0,2;MQ=58;FQ=7.8;PV4=1,1,1,1 GT:PL:GQ 0/1:34,0,144:34 chr1 144918957 . T A 206 . DP=146;VDB=0.0345;AF1=0.5;AC1=1;DP4=31,34,34,42;MQ=59;FQ=209;PV4=0.74,7.9e-36,1,0.36 GT:PL:GQ 0/1:236,0,255:99 chr1 144919008 . ACC AC 136 . INDEL;DP=112;VDB=0.0271;AF1=0.5;AC1=1;DP4=21,61,7,19;MQ=59;FQ=139;PV4=1,0.00011,1,1 GT:PL:GQ 0/1:174,0,255:99 chr1 144919094 . C T 50 . DP=11;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,7,0,4;MQ=58;FQ=53;PV4=1,0.12,1,0.22 GT:PL:GQ 0/1:80,0,144:83 chr1 144922109 . A G 96 . DP=202;VDB=0.0392;AF1=0.5;AC1=1;DP4=74,31,64,27;MQ=60;FQ=99;PV4=1,3.6e-91,0.14,1 GT:PL:GQ 0/1:126,0,255:99 chr1 144922171 . C T 225 . DP=292;VDB=0.0399;AF1=0.5;AC1=1;DP4=90,65,76,48;MQ=60;FQ=225;PV4=0.62,0.042,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 144922523 . C T 86 . DP=277;VDB=0.0392;AF1=0.5;AC1=1;DP4=147,66,43,17;MQ=59;FQ=89;PV4=0.75,0.36,1,0.44 GT:PL:GQ 0/1:116,0,255:99 chr1 144922583 . G A 192 . DP=312;VDB=0.0365;AF1=0.5;AC1=1;DP4=57,86,60,102;MQ=59;FQ=195;PV4=0.64,3.8e-91,1,1 GT:PL:GQ 0/1:222,0,255:99 chr1 144923823 . TAGGAAGAAACGGCAAGGAAGAAACGGCAA TAGGAAGAAACGGCAA 214 . INDEL;DP=83;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,9,43;MQ=30;FQ=-192 GT:PL:GQ 1/1:255,157,0:99 chr1 144930571 . C A 124 . DP=26;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,3,9,4;MQ=57;FQ=127;PV4=1,5.5e-11,0.041,1 GT:PL:GQ 0/1:154,0,231:99 chr1 144930596 . C A 195 . DP=32;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,3,8,5;MQ=58;FQ=198;PV4=0.23,0.14,0.045,1 GT:PL:GQ 0/1:225,0,255:99 chr1 144930940 . T C 95 . DP=175;VDB=0.0365;AF1=0.5;AC1=1;DP4=29,50,24,66;MQ=60;FQ=98;PV4=0.19,1.8e-80,1,1 GT:PL:GQ 0/1:125,0,255:99 chr1 144931087 . T C 151 . DP=59;VDB=0.0373;AF1=0.5;AC1=1;DP4=24,22,6,7;MQ=60;FQ=154;PV4=0.76,1,1,0.0022 GT:PL:GQ 0/1:181,0,255:99 chr1 144931330 . C T 225 . DP=194;VDB=0.0399;AF1=0.5;AC1=1;DP4=48,49,45,50;MQ=60;FQ=225;PV4=0.77,0.13,0.49,0.22 GT:PL:GQ 0/1:255,0,255:99 chr1 144931387 . T G 206 . DP=151;VDB=0.0399;AF1=0.5;AC1=1;DP4=50,59,18,22;MQ=60;FQ=209;PV4=1,1,1,1 GT:PL:GQ 0/1:236,0,255:99 chr1 144931392 . G A 225 . DP=152;VDB=0.0398;AF1=0.5;AC1=1;DP4=28,44,32,40;MQ=60;FQ=225;PV4=0.61,0.048,1,0.44 GT:PL:GQ 0/1:255,0,255:99 chr1 144946510 . C T 132 . DP=44;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,41,2;MQ=60;FQ=-156 GT:PL:GQ 1/1:165,129,0:99 chr1 144946768 . G A 49 . DP=56;VDB=0.0118;AF1=0.5;AC1=1;DP4=6,27,0,22;MQ=60;FQ=52;PV4=0.071,6.7e-20,1,1 GT:PL:GQ 0/1:79,0,255:82 chr1 144951973 . T C 168 . DP=117;VDB=0.0298;AF1=0.5;AC1=1;DP4=27,15,54,20;MQ=43;FQ=171;PV4=0.4,8.7e-38,0.4,0.099 GT:PL:GQ 0/1:198,0,255:99 chr1 144952078 . C A 100 . DP=132;VDB=0.0365;AF1=0.5;AC1=1;DP4=31,51,21,25;MQ=42;FQ=103;PV4=0.45,1.4e-36,1,1 GT:PL:GQ 0/1:130,0,255:99 chr1 144952220 . C T 88 . DP=136;VDB=0.0271;AF1=0.5;AC1=1;DP4=49,38,30,18;MQ=30;FQ=91;PV4=0.58,9.1e-24,1,1 GT:PL:GQ 0/1:118,0,250:99 chr1 144994658 . C A 225 . DP=159;VDB=0.0393;AF1=0.5;AC1=1;DP4=77,29,36,13;MQ=60;FQ=225;PV4=1,0.23,0.29,0.41 GT:PL:GQ 0/1:255,0,255:99 chr1 144994861 . C T 225 . DP=130;VDB=0.0398;AF1=0.5;AC1=1;DP4=11,25,47,45;MQ=60;FQ=210;PV4=0.048,0.27,1,0.12 GT:PL:GQ 0/1:255,0,237:99 chr1 144994902 . G A 37 . DP=141;VDB=0.0345;AF1=0.5;AC1=1;DP4=51,50,20,18;MQ=60;FQ=40;PV4=0.85,8.9e-47,0.052,1 GT:PL:GQ 0/1:67,0,255:70 chr1 145014103 . G C 85 . DP=32;VDB=0.0140;AF1=0.5;AC1=1;DP4=17,2,10,3;MQ=60;FQ=88;PV4=0.37,4.6e-12,1,1 GT:PL:GQ 0/1:115,0,234:99 chr1 145014263 . C T 99 . DP=281;VDB=0.0322;AF1=0.5;AC1=1;DP4=110,59,70,35;MQ=59;FQ=102;PV4=0.9,1.3e-75,0.045,1 GT:PL:GQ 0/1:129,0,255:99 chr1 145014394 . C T 199 . DP=108;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,56,2,41;MQ=59;FQ=202;PV4=1,0.049,0.19,0.42 GT:PL:GQ 0/1:229,0,255:99 chr1 145014411 . T C 17.1 . DP=54;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,32,0,22;MQ=59;FQ=20.1;PV4=1,6.1e-28,0.4,1 GT:PL:GQ 0/1:47,0,185:50 chr1 145015877 . G T 60 . DP=197;VDB=0.0322;AF1=0.5;AC1=1;DP4=88,70,19,13;MQ=60;FQ=63;PV4=0.85,1,1,1 GT:PL:GQ 0/1:90,0,255:93 chr1 145016020 . T G 222 . DP=125;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,21,97;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 145017822 . ct cTt 63 . INDEL;DP=5;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,4,0;MQ=54;FQ=-46.5 GT:PL:GQ 1/1:103,12,0:21 chr1 145018023 . G T 24 . DP=29;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,12,3,8;MQ=59;FQ=27;PV4=1,4.1e-15,1,1 GT:PL:GQ 0/1:54,0,255:57 chr1 145021024 . G C 123 . DP=68;VDB=0.0099;AF1=0.5;AC1=1;DP4=41,7,18,1;MQ=60;FQ=126;PV4=0.42,1,1,1 GT:PL:GQ 0/1:153,0,255:99 chr1 145038736 . C G 23 . DP=12;VDB=0.0099;AF1=0.5;AC1=1;DP4=5,0,5,1;MQ=60;FQ=26;PV4=1,7e-07,1,1 GT:PL:GQ 0/1:53,0,107:56 chr1 145038815 . A G 222 . DP=54;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,38,14;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 145038889 . G A 14.2 . DP=105;VDB=0.0325;AF1=0.5;AC1=1;DP4=61,28,10,3;MQ=60;FQ=17.1;PV4=0.75,1,1,0.27 GT:PL:GQ 0/1:44,0,255:47 chr1 145038952 . C T 76 . DP=108;VDB=0.0392;AF1=0.5;AC1=1;DP4=27,39,15,15;MQ=60;FQ=79;PV4=0.51,4.7e-33,1,1 GT:PL:GQ 0/1:106,0,255:99 chr1 145039026 . T C 5.46 . DP=49;VDB=0.0271;AF1=0.4999;AC1=1;DP4=2,34,1,10;MQ=59;FQ=7.8;PV4=0.56,2.2e-17,1,1 GT:PL:GQ 0/1:34,0,240:34 chr1 145039562 . C T 225 . DP=141;VDB=0.0365;AF1=0.5;AC1=1;DP4=58,23,39,14;MQ=60;FQ=225;PV4=0.85,4.2e-06,0.04,0.39 GT:PL:GQ 0/1:255,0,255:99 chr1 145074882 . G T 29 . DP=27;VDB=0.0099;AF1=0.5;AC1=1;DP4=17,0,10,0;MQ=60;FQ=32;PV4=1,1.1e-13,1,0.23 GT:PL:GQ 0/1:59,0,181:62 chr1 145074939 . T C 148 . DP=66;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,11,25,7;MQ=60;FQ=151;PV4=0.41,1.1e-25,1,1 GT:PL:GQ 0/1:178,0,255:99 chr1 145075208 . T A 67 . DP=25;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,9,1,10;MQ=60;FQ=70;PV4=0.18,9.7e-08,1,1 GT:PL:GQ 0/1:97,0,254:99 chr1 145075683 . C T 128 . DP=37;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,9,11,6;MQ=60;FQ=131;PV4=0.52,4.1e-08,1,1 GT:PL:GQ 0/1:158,0,255:99 chr1 145075854 . G C 125 . DP=95;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,28,15,23;MQ=60;FQ=128;PV4=0.67,6.7e-22,1,1 GT:PL:GQ 0/1:155,0,255:99 chr1 145075923 . C T 110 . DP=67;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,25,7,20;MQ=60;FQ=113;PV4=0.59,1.3e-21,1,1 GT:PL:GQ 0/1:140,0,255:99 chr1 145103844 . G A 43 . DP=126;VDB=0.0216;AF1=0.5;AC1=1;DP4=77,11,34,4;MQ=60;FQ=46;PV4=1,8.7e-44,0.064,1 GT:PL:GQ 0/1:73,0,255:76 chr1 145103947 . T C 225 . DP=248;VDB=0.0380;AF1=0.5;AC1=1;DP4=53,107,40,46;MQ=60;FQ=225;PV4=0.053,0.4,0.087,1 GT:PL:GQ 0/1:255,0,255:99 chr1 145104052 . AGTGTG AGTG 108 . INDEL;DP=55;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,41,0,10;MQ=60;FQ=111;PV4=1,0.051,1,0.11 GT:PL:GQ 0/1:146,0,255:99 chr1 145104075 . G A 48 . DP=35;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,27,0,8;MQ=60;FQ=51;PV4=1,0.0026,1,0.41 GT:PL:GQ 0/1:78,0,176:81 chr1 145109468 . A G 222 . DP=132;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,113,13;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 145109583 . C A 176 . DP=374;VDB=0.0380;AF1=0.5;AC1=1;DP4=104,88,108,63;MQ=60;FQ=179;PV4=0.089,3e-97,0.47,1 GT:PL:GQ 0/1:206,0,255:99 chr1 145112287 . T C 21 . DP=17;VDB=0.0004;AF1=0.5;AC1=1;DP4=12,0,3,0;MQ=58;FQ=24;PV4=1,0.46,1,0.21 GT:PL:GQ 0/1:51,0,158:54 chr1 145115810 . A G 225 . DP=424;VDB=0.0380;AF1=0.5;AC1=1;DP4=119,126,69,102;MQ=59;FQ=225;PV4=0.11,0.087,0.00088,1 GT:PL:GQ 0/1:255,0,255:99 chr1 145115820 . T C 83 . DP=424;VDB=0.0392;AF1=0.5;AC1=1;DP4=146,182,37,55;MQ=59;FQ=86;PV4=0.48,0.0093,1,1 GT:PL:GQ 0/1:113,0,255:99 chr1 145139088 . CG CGG 25.5 . INDEL;DP=23;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,23,0;MQ=14;FQ=-104 GT:PL:GQ 1/1:66,69,0:91 chr1 145209153 . G A 21.1 . DP=4;VDB=0.0220;AF1=0.502;AC1=1;DP4=0,1,1,2;MQ=49;FQ=-6.97;PV4=1,0.048,0.27,1 GT:PL:GQ 0/1:51,0,21:24 chr1 145209632 . T G 43 . DP=11;VDB=0.0001;AF1=0.5;AC1=1;DP4=1,1,6,0;MQ=44;FQ=12.3;PV4=0.25,0.029,1,0.047 GT:PL:GQ 0/1:73,0,39:42 chr1 145273520 . G A 115 . DP=80;VDB=0.0164;AF1=0.5;AC1=1;DP4=5,50,1,21;MQ=46;FQ=118;PV4=0.67,1,0.25,1 GT:PL:GQ 0/1:145,0,255:99 chr1 145281543 . C T 43 . DP=290;VDB=0.0392;AF1=0.5;AC1=1;DP4=79,126,27,55;MQ=48;FQ=46;PV4=0.42,4e-79,0.35,1 GT:PL:GQ 0/1:73,0,255:76 chr1 145281656 . A T 13.2 . DP=155;VDB=0.0380;AF1=0.5;AC1=1;DP4=46,85,7,15;MQ=48;FQ=16.1;PV4=0.81,1,0.46,1 GT:PL:GQ 0/1:43,0,222:46 chr1 145510376 . A G 30.5 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,4;MQ=23;FQ=-39 GT:PL:GQ 1/1:63,12,0:21 chr1 145517561 . C T 197 . DP=11;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:230,33,0:63 chr1 145531980 . T C 43.1 . DP=6;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,6,0;MQ=56;FQ=-45 GT:PL:GQ 1/1:76,18,0:33 chr1 145532322 . G A 166 . DP=13;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,2,2,7;MQ=60;FQ=42;PV4=1,0.45,1,0.2 GT:PL:GQ 0/1:196,0,69:72 chr1 145532549 . T C 155 . DP=56;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,35,18;MQ=60;FQ=-187 GT:PL:GQ 1/1:188,160,0:99 chr1 145533175 . T C 148 . DP=35;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,13,6,13;MQ=60;FQ=151;PV4=0.46,1.8e-09,1,1 GT:PL:GQ 0/1:178,0,231:99 chr1 145533314 . T C 222 . DP=49;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,38,11;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 145535921 . T C 222 . DP=153;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,90,55;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 145536082 . G A 160 . DP=83;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,33,9,32;MQ=60;FQ=163;PV4=1,1.1e-26,0.16,1 GT:PL:GQ 0/1:190,0,255:99 chr1 145536197 . G A 34 . DP=19;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,6,0,8;MQ=59;FQ=37;PV4=0.092,2.2e-06,1,1 GT:PL:GQ 0/1:64,0,218:67 chr1 145538139 . C T 225 . DP=38;VDB=0.0384;AF1=0.5;AC1=1;DP4=8,10,9,10;MQ=60;FQ=225;PV4=1,1,1,0.42 GT:PL:GQ 0/1:255,0,255:99 chr1 145538664 . A G 222 . DP=18;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,14,3;MQ=60;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr1 145539892 . T A 80 . DP=56;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,18,6,20;MQ=60;FQ=83;PV4=0.76,3.5e-27,1,0.27 GT:PL:GQ 0/1:110,0,255:99 chr1 145542281 . G A 225 . DP=75;VDB=0.0393;AF1=0.5;AC1=1;DP4=20,18,12,23;MQ=60;FQ=225;PV4=0.16,0.053,1,0.18 GT:PL:GQ 0/1:255,0,255:99 chr1 145555653 . C T 84 . DP=115;VDB=0.0392;AF1=0.5;AC1=1;DP4=41,22,31,13;MQ=60;FQ=87;PV4=0.68,5.9e-40,1,1 GT:PL:GQ 0/1:114,0,255:99 chr1 145558565 . C G 199 . DP=16;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,13;MQ=60;FQ=-69 GT:PL:GQ 1/1:232,42,0:81 chr1 145558824 . A C 102 . DP=54;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,9,21,6;MQ=60;FQ=105;PV4=0.54,4.5e-19,0.16,1 GT:PL:GQ 0/1:132,0,255:99 chr1 145561594 . C T 124 . DP=129;VDB=0.0392;AF1=0.5;AC1=1;DP4=37,30,33,28;MQ=60;FQ=127;PV4=1,2.5e-49,0.15,1 GT:PL:GQ 0/1:154,0,255:99 chr1 145562293 . G C 225 . DP=73;VDB=0.0399;AF1=0.5;AC1=1;DP4=23,16,16,17;MQ=59;FQ=225;PV4=0.48,0.011,0.061,1 GT:PL:GQ 0/1:255,0,255:99 chr1 145562881 . T C 110 . DP=24;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,3,7,5;MQ=60;FQ=113;PV4=0.67,8.8e-09,1,1 GT:PL:GQ 0/1:140,0,189:99 chr1 145566535 . C T 54 . DP=14;VDB=0.0099;AF1=0.5;AC1=1;DP4=5,0,9,0;MQ=60;FQ=56.8;PV4=1,6.7e-06,1,0.33 GT:PL:GQ 0/1:84,0,97:87 chr1 145576116 . C G 69 . DP=16;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,3,8,3;MQ=60;FQ=56.9;PV4=0.24,4.1e-10,1,0.38 GT:PL:GQ 0/1:99,0,84:87 chr1 145581639 . ctttt cTtttt 39.5 . INDEL;DP=14;VDB=0.0014;AF1=0.5;AC1=1;DP4=1,5,0,7;MQ=58;FQ=41.3;PV4=0.46,1,0.19,1 GT:PL:GQ 0/1:77,0,82:79 chr1 145585317 . A G 189 . DP=33;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,23,9;MQ=60;FQ=-123 GT:PL:GQ 1/1:222,96,0:99 chr1 145588536 . C T 138 . DP=129;VDB=0.0380;AF1=0.5;AC1=1;DP4=32,21,44,26;MQ=60;FQ=141;PV4=0.85,6.9e-35,0.11,1 GT:PL:GQ 0/1:168,0,255:99 chr1 145597116 . C T 222 . DP=31;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,2,29;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 145597417 . C A 109 . DP=29;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,4,10,5;MQ=60;FQ=112;PV4=1,1.8e-12,1,0.44 GT:PL:GQ 0/1:139,0,223:99 chr1 145598459 . T C 222 . DP=27;VDB=0.0305;AF1=1;AC1=2;DP4=0,0,19,8;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 145601861 . G A 163 . DP=68;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,48;MQ=60;FQ=-217 GT:PL:GQ 1/1:196,190,0:99 chr1 145696694 . G A 225 . DP=76;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,31,16,23;MQ=60;FQ=225;PV4=0.023,0.03,0.17,0.23 GT:PL:GQ 0/1:255,0,255:99 chr1 146514576 . T C 182 . DP=106;VDB=0.0400;AF1=0.5;AC1=1;DP4=29,17,34,25;MQ=49;FQ=185;PV4=0.69,6.9e-34,1,0.36 GT:PL:GQ 0/1:212,0,255:99 chr1 146633933 . G A 3.01 . DP=12;VDB=0.0215;AF1=0.4997;AC1=1;DP4=8,1,2,1;MQ=60;FQ=4.77;PV4=0.45,1.8e-05,1,1 GT:PL:GQ 0/1:30,0,182:28 chr1 146643555 . A G 221 . DP=34;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,8,11,6;MQ=59;FQ=190;PV4=0.29,1,0.19,1 GT:PL:GQ 0/1:251,0,217:99 chr1 146656292 . A G 178 . DP=24;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,6,17;MQ=60;FQ=-96 GT:PL:GQ 1/1:211,69,0:99 chr1 146672906 . C T 222 . DP=92;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,54,36;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 146680262 . A G 40.3 . DP=6;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:73,15,0:27 chr1 146684095 . T C 53 . DP=54;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,23,2,21;MQ=60;FQ=56;PV4=0.28,6e-27,1,1 GT:PL:GQ 0/1:83,0,255:86 chr1 146685121 . G A 79 . DP=12;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:112,33,0:63 chr1 146687250 . A T 83 . DP=14;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:116,36,0:69 chr1 146714392 . G T,C 109 . DP=13;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,8,2;MQ=60;FQ=-45 GT:PL:GQ 1/1:199,75,57,147,0,135:33 chr1 146724093 . A G 99.5 . DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:132,12,0:21 chr1 146728162 . TA TAA 214 . INDEL;DP=60;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,49,11;MQ=59;FQ=-216 GT:PL:GQ 1/1:255,181,0:99 chr1 146736092 . C T 26 . DP=20;VDB=0.0190;AF1=0.5;AC1=1;DP4=11,1,7,1;MQ=60;FQ=29;PV4=1,3e-10,1,1 GT:PL:GQ 0/1:56,0,200:59 chr1 146739277 . T C 74 . DP=86;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,36,3,40;MQ=60;FQ=77;PV4=0.48,1.4e-47,1,1 GT:PL:GQ 0/1:104,0,255:99 chr1 146740502 . C G 38 . DP=49;VDB=0.0216;AF1=0.5;AC1=1;DP4=26,9,13,1;MQ=60;FQ=41;PV4=0.24,6.7e-12,1,1 GT:PL:GQ 0/1:68,0,255:71 chr1 146740576 . G A 222 . DP=60;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,25,35;MQ=59;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr1 146747153 . T C 106 . DP=57;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,54;MQ=60;FQ=-199 GT:PL:GQ 1/1:139,172,0:99 chr1 146747232 . C T 14.2 . DP=6;VDB=0.0070;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=17.1;PV4=1,0.0011,1,0.39 GT:PL:GQ 0/1:44,0,78:47 chr1 146748008 . CAGCCA C 75.5 . INDEL;DP=7;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,3,1,3;MQ=49;FQ=78.4;PV4=1,1,0.026,1 GT:PL:GQ 0/1:113,0,132:99 chr1 146751782 . A C 216 . DP=31;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,17,13;MQ=60;FQ=-117 GT:PL:GQ 1/1:249,90,0:99 chr1 146756222 . AAAACAAACAAACAAA AAAACAAACAAA 217 . INDEL;DP=25;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,10,0,11;MQ=55;FQ=211;PV4=1,0.035,1,0.28 GT:PL:GQ 0/1:255,0,246:99 chr1 146759306 . T C 45 . DP=23;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,6,11,1;MQ=59;FQ=48;PV4=0.027,1.2e-12,0.18,0.13 GT:PL:GQ 0/1:75,0,242:78 chr1 146763089 . G A 83 . DP=62;VDB=0.0365;AF1=0.5;AC1=1;DP4=24,10,14,11;MQ=60;FQ=86;PV4=0.28,3.2e-25,1,1 GT:PL:GQ 0/1:113,0,255:99 chr1 146766069 . C CAT 214 . INDEL;DP=39;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,34,5;MQ=57;FQ=-152 GT:PL:GQ 1/1:255,117,0:99 chr1 146767149 . G T 202 . DP=21;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,12,9;MQ=60;FQ=-90 GT:PL:GQ 1/1:235,63,0:99 chr1 147086504 . A C 48 . DP=21;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,10,1,9;MQ=58;FQ=51;PV4=1,1.4e-06,1,1 GT:PL:GQ 0/1:78,0,161:81 chr1 147087721 . T A 225 . DP=34;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,17,7,9;MQ=60;FQ=182;PV4=0.014,1,1,1 GT:PL:GQ 0/1:255,0,209:99 chr1 147091972 . C T 147 . DP=48;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,19,6,17;MQ=60;FQ=150;PV4=0.74,1.8e-13,1,0.42 GT:PL:GQ 0/1:177,0,255:99 chr1 147096794 . A G 82 . DP=13;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,10;MQ=60;FQ=-63 GT:PL:GQ 1/1:115,36,0:69 chr1 147096828 . C G 64.1 . DP=7;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:97,21,0:39 chr1 147119273 . G A 225 . DP=57;VDB=0.0244;AF1=0.5;AC1=1;DP4=16,13,15,11;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 147121977 . C T 222 . DP=31;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,7;MQ=59;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 147124310 . T G 141 . DP=11;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,6,5;MQ=60;FQ=-60 GT:PL:GQ 1/1:174,33,0:63 chr1 147131465 . T C 181 . DP=29;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,23,5;MQ=60;FQ=-111 GT:PL:GQ 1/1:214,84,0:99 chr1 147131501 . A T 141 . DP=48;VDB=0.0298;AF1=0.5;AC1=1;DP4=14,5,21,6;MQ=59;FQ=144;PV4=1,1e-17,1,0.43 GT:PL:GQ 0/1:171,0,255:99 chr1 147131662 . AAAGAAGAA AAAGAA 217 . INDEL;DP=79;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,18,15,17;MQ=57;FQ=217;PV4=0.64,4.6e-18,0.00057,1 GT:PL:GQ 0/1:255,0,255:99 chr1 147131945 . T C 90.5 . DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:123,12,0:21 chr1 147230217 . T C 70 . DP=33;VDB=0.0393;AF1=0.5;AC1=1;DP4=14,3,12,4;MQ=60;FQ=73;PV4=0.69,3.9e-15,1,0.12 GT:PL:GQ 0/1:100,0,255:99 chr1 147381444 . A C 41.1 . DP=7;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:74,21,0:39 chr1 147400842 . T A 14.2 . DP=7;VDB=0.0210;AF1=0.5;AC1=1;DP4=1,3,1,2;MQ=56;FQ=17.1;PV4=1,0.11,0.14,0.17 GT:PL:GQ 0/1:44,0,88:47 chr1 147806559 . C T 222 . DP=37;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,28,6;MQ=59;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 147806874 . G C 6.02 . DP=3;VDB=0.0089;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr1 149290881 . C T 75 . DP=27;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,5,5,5;MQ=35;FQ=78;PV4=0.42,0.00032,1,0.055 GT:PL:GQ 0/1:105,0,175:99 chr1 149676401 . A G 106 . DP=59;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,17,3,29;MQ=41;FQ=109;PV4=0.025,2.4e-19,4e-08,1 GT:PL:GQ 0/1:136,0,255:99 chr1 149676508 . A T 17.1 . DP=14;VDB=0.0300;AF1=0.5;AC1=1;DP4=0,10,0,4;MQ=26;FQ=20.1;PV4=1,1,1,1 GT:PL:GQ 0/1:47,0,104:50 chr1 149764685 . G C 35 . DP=10;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,1,4,2;MQ=58;FQ=38;PV4=1,2.7e-06,1,1 GT:PL:GQ 0/1:65,0,96:68 chr1 149783886 . C T 225 . DP=51;VDB=0.0164;AF1=0.5;AC1=1;DP4=9,18,8,16;MQ=52;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 149871905 . G C 116 . DP=37;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,10,9,8;MQ=59;FQ=119;PV4=1,5.7e-14,0.47,1 GT:PL:GQ 0/1:146,0,255:99 chr1 149880863 . A G 146 . DP=89;VDB=0.0399;AF1=0.5;AC1=1;DP4=23,31,13,18;MQ=60;FQ=149;PV4=1,2.5e-18,1,1 GT:PL:GQ 0/1:176,0,255:99 chr1 149881173 . A C 117 . DP=32;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,12,3,15;MQ=58;FQ=120;PV4=0.62,5.7e-09,0.12,1 GT:PL:GQ 0/1:147,0,176:99 chr1 149881183 . C T 207 . DP=28;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,11,3,14;MQ=58;FQ=127;PV4=0.26,0.064,0.13,0.041 GT:PL:GQ 0/1:237,0,154:99 chr1 149897528 . T A 93 . DP=12;VDB=0.0025;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=60;FQ=73;PV4=1,1,1,1 GT:PL:GQ 0/1:123,0,100:99 chr1 149897966 . T G 104 . DP=57;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,23,6,17;MQ=58;FQ=107;PV4=0.77,7e-24,0.087,0.38 GT:PL:GQ 0/1:134,0,255:99 chr1 149900610 . T C 225 . DP=47;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,2,17,4;MQ=60;FQ=214;PV4=0.4,1,1,0.15 GT:PL:GQ 0/1:255,0,241:99 chr1 149903122 . G C 36 . DP=21;VDB=0.0140;AF1=0.5;AC1=1;DP4=7,6,5,3;MQ=60;FQ=39;PV4=1,3.3e-08,1,0.014 GT:PL:GQ 0/1:66,0,255:69 chr1 149906167 . T G 96 . DP=45;VDB=0.0345;AF1=0.5;AC1=1;DP4=22,7,12,4;MQ=59;FQ=99;PV4=1,7.5e-09,1,1 GT:PL:GQ 0/1:126,0,255:99 chr1 149907172 . CAAA CAA 144 . INDEL;DP=26;VDB=0.0244;AF1=0.5;AC1=1;DP4=10,4,6,5;MQ=60;FQ=147;PV4=0.43,0.019,1,0.11 GT:PL:GQ 0/1:182,0,202:99 chr1 149907258 . C T 225 . DP=46;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,8,13,6;MQ=59;FQ=225;PV4=1,0.29,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 149907276 . A G 122 . DP=49;VDB=0.0271;AF1=0.5;AC1=1;DP4=21,9,14,5;MQ=60;FQ=125;PV4=1,5.9e-10,0.11,1 GT:PL:GQ 0/1:152,0,255:99 chr1 149908108 . A G 177 . DP=29;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,10,1,15;MQ=60;FQ=132;PV4=1,1,1,1 GT:PL:GQ 0/1:207,0,159:99 chr1 149943157 . G A 166 . DP=91;VDB=0.0380;AF1=0.5;AC1=1;DP4=29,13,27,20;MQ=60;FQ=169;PV4=0.28,3.1e-27,1,1 GT:PL:GQ 0/1:196,0,255:99 chr1 149949570 . C T 8.64 . DP=11;VDB=0.0208;AF1=0.5;AC1=1;DP4=0,8,2,1;MQ=60;FQ=11.3;PV4=0.055,0.008,1,1 GT:PL:GQ 0/1:38,0,142:40 chr1 150049934 . A G 3.54 . DP=45;VDB=0.0081;AF1=0.4998;AC1=1;DP4=4,26,0,14;MQ=59;FQ=5.47;PV4=0.29,1.1e-14,1,0.38 GT:PL:GQ 0/1:31,0,255:30 chr1 150128425 . C T 17.1 . DP=14;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,4,0,4;MQ=60;FQ=20.1;PV4=0.24,6.8e-05,1,1 GT:PL:GQ 0/1:47,0,181:50 chr1 150129267 . G A 129 . DP=15;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,2,11;MQ=58;FQ=-66 GT:PL:GQ 1/1:162,39,0:75 chr1 150130982 . G GC 132 . INDEL;DP=39;VDB=0.0140;AF1=0.5;AC1=1;DP4=15,1,22,0;MQ=60;FQ=135;PV4=0.42,0.19,1,0.35 GT:PL:GQ 0/1:170,0,186:99 chr1 150193165 . G A 38 . DP=25;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,12,0,11;MQ=60;FQ=41;PV4=0.49,2.5e-07,1,1 GT:PL:GQ 0/1:68,0,211:71 chr1 150199123 . G T 225 . DP=98;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,39,14,25;MQ=60;FQ=225;PV4=0.67,0.35,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 150249101 . C A 31 . DP=8;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,2,0,6;MQ=60;FQ=23.6;PV4=1,9e-06,1,0.13 GT:PL:GQ 0/1:61,0,51:54 chr1 150258838 . C G 222 . DP=42;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,30,10;MQ=60;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 150259400 . A C 66 . DP=42;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,17,0,23;MQ=60;FQ=69;PV4=0.2,4e-20,1,1 GT:PL:GQ 0/1:96,0,233:99 chr1 150276429 . G A 164 . DP=24;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,11,4,6;MQ=60;FQ=167;PV4=0.34,0.066,1,0.26 GT:PL:GQ 0/1:194,0,221:99 chr1 150276461 . G A 13.2 . DP=13;VDB=0.0019;AF1=0.5;AC1=1;DP4=1,7,2,2;MQ=60;FQ=16.1;PV4=0.24,1.1e-06,1,0.37 GT:PL:GQ 0/1:43,0,176:46 chr1 150281202 . A C 78 . DP=9;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:111,27,0:51 chr1 150281343 . C T 133 . DP=67;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,21,11,15;MQ=59;FQ=136;PV4=0.8,2.6e-14,1,0.14 GT:PL:GQ 0/1:163,0,255:99 chr1 150284311 . C T 116 . DP=100;VDB=0.0271;AF1=0.5;AC1=1;DP4=30,22,29,19;MQ=59;FQ=119;PV4=0.84,5.3e-43,1,1 GT:PL:GQ 0/1:146,0,255:99 chr1 150298192 . G A 158 . DP=17;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,1,8,2;MQ=60;FQ=121;PV4=1,0.37,1,1 GT:PL:GQ 0/1:188,0,148:99 chr1 150319081 . T A 10.2 . DP=2;VDB=0.0174;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:41,6,0:8 chr1 150337289 . G T 150 . DP=42;VDB=0.0216;AF1=0.5;AC1=1;DP4=12,7,16,7;MQ=59;FQ=153;PV4=0.75,6.9e-06,1,1 GT:PL:GQ 0/1:180,0,255:99 chr1 150415631 . T G 81 . DP=16;VDB=0.0190;AF1=0.5;AC1=1;DP4=8,0,5,1;MQ=60;FQ=84;PV4=0.43,0.062,1,0.039 GT:PL:GQ 0/1:111,0,149:99 chr1 150416913 . A G 4.13 . DP=15;VDB=0.0019;AF1=0.4998;AC1=1;DP4=1,9,0,4;MQ=60;FQ=6.2;PV4=1,5e-07,1,1 GT:PL:GQ 0/1:32,0,188:31 chr1 150429944 . A G 225 . DP=86;VDB=0.0345;AF1=0.5;AC1=1;DP4=22,24,16,21;MQ=60;FQ=225;PV4=0.82,0.19,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 150437215 . A G 167 . DP=24;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,12,4,5;MQ=60;FQ=170;PV4=0.36,1,1,1 GT:PL:GQ 0/1:197,0,244:99 chr1 150470296 . G A 21 . DP=8;VDB=0.0126;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=24;PV4=1,0.00014,1,0.037 GT:PL:GQ 0/1:51,0,99:54 chr1 150482255 . A G 225 . DP=86;VDB=0.0322;AF1=0.5;AC1=1;DP4=21,29,14,20;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 150485566 . T G 5.46 . DP=3;VDB=0.0163;AF1=0.5003;AC1=1;DP4=1,0,2,0;MQ=60;FQ=3.03;PV4=1,0.077,1,1 GT:PL:GQ 0/1:34,0,28:31 chr1 150485571 . T C,G 59 . DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:105,23,14,88,0,85:16 chr1 150522471 . CTG CTGTG 214 . INDEL;DP=25;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,20,5;MQ=59;FQ=-110 GT:PL:GQ 1/1:255,75,0:99 chr1 150526044 . G C 133 . DP=141;VDB=0.0399;AF1=0.5;AC1=1;DP4=27,30,38,43;MQ=59;FQ=136;PV4=1,5.3e-46,0.25,1 GT:PL:GQ 0/1:163,0,255:99 chr1 150526406 . C T 156 . DP=51;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,22,8,15;MQ=60;FQ=159;PV4=0.22,4.6e-12,1,0.3 GT:PL:GQ 0/1:186,0,255:99 chr1 150528118 . tacacaca tACACacacaca 6.55 . INDEL;DP=26;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,13,1,3;MQ=54;FQ=9.05;PV4=1,1,1.7e-07,0.24 GT:PL:GQ 0/1:43,0,255:44 chr1 150528175 . gcaca gca 24.5 . INDEL;DP=8;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,4,1,2;MQ=49;FQ=27.5;PV4=0.43,1.1e-05,0,0.49 GT:PL:GQ 0/1:62,0,167:65 chr1 150529322 . T TAA 214 . INDEL;DP=18;VDB=0.0284;AF1=1;AC1=2;DP4=0,0,12,6;MQ=60;FQ=-88.5 GT:PL:GQ 1/1:255,54,0:99 chr1 150531008 . T C 222 . DP=48;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,29,17;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 150531050 . G A 225 . DP=58;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,11,18,8;MQ=60;FQ=225;PV4=0.78,0.32,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr1 150531170 . C T 222 . DP=63;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,23,37;MQ=60;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr1 150550019 . TA TAA 214 . INDEL;DP=24;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,2,22;MQ=59;FQ=-107 GT:PL:GQ 1/1:255,72,0:99 chr1 150600181 . C T 193 . DP=12;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-63 GT:PL:GQ 1/1:226,36,0:69 chr1 150676485 . T C 32.3 . DP=5;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:65,15,0:27 chr1 150686633 . A T 51 . DP=22;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,9,4,6;MQ=60;FQ=54;PV4=0.65,1.4e-12,1,1 GT:PL:GQ 0/1:81,0,233:84 chr1 150737220 . A G 222 . DP=96;VDB=0.0400;AF1=0.5;AC1=1;DP4=28,32,14,14;MQ=60;FQ=223;PV4=0.82,0.053,1,0.48 GT:PL:GQ 0/1:252,0,255:99 chr1 150771703 . T C 222 . DP=137;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,76,55;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 150779755 . C T 191 . DP=98;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,47,46;MQ=59;FQ=-282 GT:PL:GQ 1/1:224,255,0:99 chr1 150801466 . T C 145 . DP=24;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,19,4;MQ=60;FQ=-96 GT:PL:GQ 1/1:178,69,0:99 chr1 150938616 . G A 208 . DP=32;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,8;MQ=59;FQ=-117 GT:PL:GQ 1/1:241,90,0:99 chr1 150940625 . T G 225 . DP=46;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,6,17,8;MQ=60;FQ=220;PV4=1,1,1,0.41 GT:PL:GQ 0/1:255,0,248:99 chr1 150944541 . A G 49.3 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,1,4;MQ=55;FQ=-42 GT:PL:GQ 1/1:82,15,0:27 chr1 150969992 . T C 162 . DP=92;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,22,24,23;MQ=59;FQ=165;PV4=1,5.5e-21,1,1 GT:PL:GQ 0/1:192,0,255:99 chr1 150970577 . G T 106 . DP=22;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,19,3;MQ=60;FQ=-93 GT:PL:GQ 1/1:139,66,0:99 chr1 150972538 . G A 82.5 . DP=9;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,4;MQ=54;FQ=-39 GT:PL:GQ 1/1:115,12,0:21 chr1 150974162 . G A 208 . DP=38;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,27,10;MQ=59;FQ=-138 GT:PL:GQ 1/1:241,111,0:99 chr1 150974971 . T A 225 . DP=84;VDB=0.0271;AF1=0.5;AC1=1;DP4=20,23,21,16;MQ=60;FQ=225;PV4=0.38,0.17,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 150975108 . T C 206 . DP=35;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,19;MQ=60;FQ=-120 GT:PL:GQ 1/1:239,93,0:99 chr1 150990825 . A G 10.4 . DP=5;VDB=0.0176;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=13.2;PV4=1,0.099,1,0.46 GT:PL:GQ 0/1:40,0,76:42 chr1 150990913 . G C 225 . DP=41;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,2,16,3;MQ=60;FQ=208;PV4=0.66,1,1,1 GT:PL:GQ 0/1:255,0,235:99 chr1 150991221 . A G 42 . DP=22;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,8,1,13;MQ=59;FQ=45;PV4=1,8.5e-13,0.23,1 GT:PL:GQ 0/1:72,0,132:75 chr1 151006539 . C A 222 . DP=38;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,19;MQ=58;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 151009984 . C G 43 . DP=19;VDB=0.0027;AF1=0.5;AC1=1;DP4=13,2,4,0;MQ=60;FQ=46;PV4=1,1,1,1 GT:PL:GQ 0/1:73,0,238:76 chr1 151011325 . C T 212 . DP=44;VDB=0.0393;AF1=0.5;AC1=1;DP4=16,7,14,6;MQ=59;FQ=215;PV4=1,0.019,1,1 GT:PL:GQ 0/1:242,0,255:99 chr1 151011543 . G A 81 . DP=41;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,19,6,6;MQ=60;FQ=84;PV4=0.27,8.9e-10,1,1 GT:PL:GQ 0/1:111,0,255:99 chr1 151015868 . G A 133 . DP=103;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,36,17,29;MQ=60;FQ=136;PV4=1,7.3e-27,0.14,1 GT:PL:GQ 0/1:163,0,255:99 chr1 151019180 . A G 134 . DP=64;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,24;MQ=60;FQ=-135 GT:PL:GQ 1/1:167,108,0:99 chr1 151026815 . C T 222 . DP=78;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,25,47;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr1 151028234 . G T 222 . DP=63;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,12,49;MQ=60;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr1 151039609 . A G 62.1 . DP=7;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:95,21,0:39 chr1 151062957 . G A 225 . DP=114;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,46,14,32;MQ=59;FQ=225;PV4=1,0.31,0.18,1 GT:PL:GQ 0/1:255,0,255:99 chr1 151104950 . G A 107 . DP=28;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,0,11,5;MQ=60;FQ=106;PV4=0.12,1.6e-09,1,0.43 GT:PL:GQ 0/1:137,0,135:99 chr1 151105824 . C G 71 . DP=8;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,3,5;MQ=60;FQ=-51 GT:PL:GQ 1/1:104,24,0:45 chr1 151108137 . T G 177 . DP=75;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,45,28;MQ=59;FQ=-247 GT:PL:GQ 1/1:210,220,0:99 chr1 151114882 . CT CTT 214 . INDEL;DP=22;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,17,5;MQ=60;FQ=-101 GT:PL:GQ 1/1:255,66,0:99 chr1 151143166 . C T 131 . DP=23;VDB=0.0025;AF1=0.5;AC1=1;DP4=1,14,2,6;MQ=60;FQ=134;PV4=0.27,0.36,1,1 GT:PL:GQ 0/1:161,0,200:99 chr1 151144057 . C T 127 . DP=69;VDB=0.0393;AF1=0.5;AC1=1;DP4=16,24,10,15;MQ=60;FQ=130;PV4=1,1e-21,0.1,0.29 GT:PL:GQ 0/1:157,0,255:99 chr1 151146186 . C G 84 . DP=16;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,0,15;MQ=58;FQ=-72 GT:PL:GQ 1/1:117,45,0:87 chr1 151205303 . A G 84.5 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:117,12,0:21 chr1 151209063 . C T 222 . DP=88;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,54,32;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 151210789 . C T 222 . DP=148;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,76,64;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 151212399 . CCT CCTTCT 123 . INDEL;DP=7;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,2,2;MQ=47;FQ=-46.5 GT:PL:GQ 1/1:163,12,0:21 chr1 151237589 . TCCCCCCC TCCCCCC 28.5 . INDEL;DP=14;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-70.5 GT:PL:GQ 1/1:69,36,0:61 chr1 151238222 . G A 63 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:95,9,0:16 chr1 151239051 . T C 222 . DP=44;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,27;MQ=60;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 151239570 . C T 222 . DP=13;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,6;MQ=60;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr1 151254041 . T C 222 . DP=28;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,22,6;MQ=59;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 151280400 . C G 46.3 . DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:79,15,0:27 chr1 151288172 . G A 222 . DP=37;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,10;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 151288391 . A G 222 . DP=58;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,24,31;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 151315287 . G C 132 . DP=75;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,20,19,17;MQ=60;FQ=135;PV4=0.48,1.3e-25,1,1 GT:PL:GQ 0/1:162,0,255:99 chr1 151316161 . G A 151 . DP=20;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,16,3;MQ=60;FQ=-84 GT:PL:GQ 1/1:184,57,0:99 chr1 151337788 . A G 115 . DP=13;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,2,10;MQ=60;FQ=-63 GT:PL:GQ 1/1:148,36,0:69 chr1 151372138 . G A 222 . DP=27;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,9,17;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 151373200 . T C 222 . DP=39;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,23,15;MQ=59;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 151377248 . T C 101 . DP=15;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,12,3;MQ=58;FQ=-72 GT:PL:GQ 1/1:134,45,0:87 chr1 151379250 . G A 28 . DP=3;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:60,9,0:16 chr1 151381320 . GAAAAAAA GAAAAAA 104 . INDEL;DP=48;VDB=0.0345;AF1=1;AC1=2;DP4=1,0,9,35;MQ=59;FQ=-153;PV4=0.22,0.26,1,0.28 GT:PL:GQ 1/1:145,118,0:99 chr1 151384711 . A G 184 . DP=33;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,20,9;MQ=60;FQ=-114 GT:PL:GQ 1/1:217,87,0:99 chr1 151384733 . G A 192 . DP=46;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,28,15;MQ=60;FQ=-156 GT:PL:GQ 1/1:225,129,0:99 chr1 151395782 . T C 115 . DP=7;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:148,18,0:33 chr1 151396037 . A C 176 . DP=57;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,10,44;MQ=60;FQ=-190 GT:PL:GQ 1/1:209,163,0:99 chr1 151400942 . A C 78 . DP=16;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,13;MQ=60;FQ=-69 GT:PL:GQ 1/1:111,42,0:81 chr1 151402045 . A G 151 . DP=50;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,45,3;MQ=60;FQ=-171 GT:PL:GQ 1/1:184,144,0:99 chr1 151403244 . T C 47 . DP=18;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,8,0,7;MQ=60;FQ=50;PV4=0.25,8.9e-06,1,1 GT:PL:GQ 0/1:77,0,228:80 chr1 151499635 . C T 80 . DP=18;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,14;MQ=60;FQ=-75 GT:PL:GQ 1/1:113,48,0:93 chr1 151501737 . T C 47.1 . DP=7;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,5,2;MQ=60;FQ=-48 GT:PL:GQ 1/1:80,21,0:39 chr1 151502427 . C T 78 . DP=16;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,5,5,1;MQ=60;FQ=81;PV4=0.31,0.24,1,1 GT:PL:GQ 0/1:108,0,205:99 chr1 151502589 . G A 117 . DP=44;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,11,12,11;MQ=60;FQ=120;PV4=1,1.8e-14,1,0.13 GT:PL:GQ 0/1:147,0,255:99 chr1 151508061 . A C 9.52 . DP=6;VDB=0.0008;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=56;FQ=12.2;PV4=1,0.00017,0.27,0.14 GT:PL:GQ 0/1:39,0,55:41 chr1 151534142 . A C 96 . DP=21;VDB=0.0398;AF1=0.5;AC1=1;DP4=8,1,10,2;MQ=59;FQ=99;PV4=1,2.4e-08,0.2,0.14 GT:PL:GQ 0/1:126,0,165:99 chr1 151538784 . ttctctctctctctctctctc ttctctctctctctctctc 148 . INDEL;DP=17;VDB=0.0380;AF1=0.5;AC1=1;DP4=0,4,2,4;MQ=60;FQ=109;PV4=0.47,7.5e-07,1,1 GT:PL:GQ 0/1:186,0,144:99 chr1 151542099 . G T 97 . DP=38;VDB=0.0244;AF1=0.5;AC1=1;DP4=15,3,16,4;MQ=60;FQ=100;PV4=1,5.7e-11,1,1 GT:PL:GQ 0/1:127,0,229:99 chr1 151546931 . A G 6.79 . DP=2;VDB=0.0173;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:37,6,0:7 chr1 151551320 . G A 101 . DP=27;VDB=0.0325;AF1=0.5;AC1=1;DP4=8,10,2,6;MQ=60;FQ=104;PV4=0.42,0.032,1,1 GT:PL:GQ 0/1:131,0,255:99 chr1 151554503 . T C 167 . DP=41;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,4,17,1;MQ=60;FQ=170;PV4=0.36,0.3,1,1 GT:PL:GQ 0/1:197,0,255:99 chr1 151634803 . G A 6.98 . DP=15;VDB=0.0014;AF1=0.4999;AC1=1;DP4=1,8,0,5;MQ=60;FQ=9.53;PV4=1,1.2e-06,1,0.27 GT:PL:GQ 0/1:36,0,185:37 chr1 151655751 . C T 39 . DP=9;VDB=0.0224;AF1=0.5;AC1=1;DP4=6,0,3,0;MQ=60;FQ=42;PV4=1,0.2,1,1 GT:PL:GQ 0/1:69,0,133:72 chr1 151675618 . T C 222 . DP=27;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,20,6;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 151679900 . C T 68 . DP=24;VDB=0.0081;AF1=0.5;AC1=1;DP4=8,1,12,2;MQ=60;FQ=71;PV4=1,3e-10,1,0.21 GT:PL:GQ 0/1:98,0,162:99 chr1 151686983 . T A 70 . DP=31;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,3,9,7;MQ=60;FQ=73;PV4=0.26,1.5e-15,1,1 GT:PL:GQ 0/1:100,0,232:99 chr1 151700189 . CC CCTGC 205 . INDEL;DP=11;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,10;MQ=47;FQ=-64.5 GT:PL:GQ 1/1:246,30,0:57 chr1 151701210 . A G 56 . DP=22;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,3,7,1;MQ=60;FQ=59;PV4=1,8.4e-06,1,0.25 GT:PL:GQ 0/1:86,0,244:89 chr1 151732700 . A G 48 . DP=58;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,27,2,19;MQ=60;FQ=51;PV4=0.18,7.6e-25,0.093,1 GT:PL:GQ 0/1:78,0,255:81 chr1 151733327 . T C 225 . DP=56;VDB=0.0140;AF1=0.5;AC1=1;DP4=11,21,5,17;MQ=59;FQ=225;PV4=0.55,1,0.043,0.38 GT:PL:GQ 0/1:255,0,255:99 chr1 151733335 . T G 89 . DP=53;VDB=0.0066;AF1=0.5;AC1=1;DP4=11,21,4,17;MQ=59;FQ=92;PV4=0.35,1.6e-18,0.039,1 GT:PL:GQ 0/1:119,0,255:99 chr1 151733874 . C G 118 . DP=36;VDB=0.0190;AF1=0.5;AC1=1;DP4=14,4,12,5;MQ=60;FQ=121;PV4=0.71,3e-14,1,1 GT:PL:GQ 0/1:148,0,255:99 chr1 151740666 . T C 188 . DP=47;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,18,25;MQ=59;FQ=-156 GT:PL:GQ 1/1:221,129,0:99 chr1 151742580 . gac g 137 . INDEL;DP=17;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,3,4;MQ=33;FQ=-55.5 GT:PL:GQ 1/1:177,21,0:39 chr1 151742588 . C G 161 . DP=25;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,16,6;MQ=38;FQ=-93 GT:PL:GQ 1/1:194,66,0:99 chr1 151747043 . C T 222 . DP=65;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,33;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 151747733 . C T 147 . DP=12;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:180,27,0:51 chr1 151747799 . G A 57 . DP=9;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:90,27,0:51 chr1 151748425 . C A 116 . DP=19;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,17;MQ=60;FQ=-81 GT:PL:GQ 1/1:149,54,0:99 chr1 151751081 . G A 102 . DP=19;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,13,5;MQ=60;FQ=-81 GT:PL:GQ 1/1:135,54,0:99 chr1 151754112 . T C 222 . DP=56;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,17,37;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr1 151780177 . C T 181 . DP=27;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,4,20;MQ=59;FQ=-99 GT:PL:GQ 1/1:214,72,0:99 chr1 151783688 . A C 62 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:94,9,0:16 chr1 151789647 . T G 87 . DP=32;VDB=0.0190;AF1=0.5;AC1=1;DP4=10,2,18,1;MQ=56;FQ=90;PV4=0.54,2.5e-10,0.18,0.23 GT:PL:GQ 0/1:117,0,201:99 chr1 151798295 . G A 225 . DP=76;VDB=0.0399;AF1=0.5;AC1=1;DP4=24,13,25,12;MQ=59;FQ=225;PV4=1,0.45,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 151803449 . G T 87 . DP=31;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,2,12,4;MQ=60;FQ=90;PV4=0.65,3.4e-11,1,0.079 GT:PL:GQ 0/1:117,0,205:99 chr1 151811226 . G A 33 . DP=3;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:65,9,0:16 chr1 151819738 . gggaggcaggaggcagg gGGAGGCAggaggcaggaggcagg 45.2 . INDEL;DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,2,0;MQ=47;FQ=-40.5 GT:PL:GQ 1/1:84,6,0:10 chr1 151820298 . G C 222 . DP=29;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,16,12;MQ=60;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 151820324 . T C 203 . DP=25;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,13;MQ=60;FQ=-102 GT:PL:GQ 1/1:236,75,0:99 chr1 151825991 . G T 222 . DP=50;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,10,36;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 151862661 . G A 222 . DP=53;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,40,10;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 151867560 . G A 222 . DP=53;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,38,13;MQ=55;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 151881885 . A C 85 . DP=11;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:118,30,0:57 chr1 152057794 . G C 149 . DP=87;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,20,23,20;MQ=60;FQ=152;PV4=1,2.6e-26,0.16,1 GT:PL:GQ 0/1:179,0,255:99 chr1 152079823 . C G 125 . DP=53;VDB=0.0244;AF1=0.5;AC1=1;DP4=18,7,20,6;MQ=60;FQ=128;PV4=0.76,1.1e-21,1,1 GT:PL:GQ 0/1:155,0,255:99 chr1 152079989 . T G 108 . DP=139;VDB=0.0365;AF1=0.5;AC1=1;DP4=50,17,53,14;MQ=60;FQ=111;PV4=0.68,9.3e-48,1,1 GT:PL:GQ 0/1:138,0,255:99 chr1 152081921 . G C 183 . DP=114;VDB=0.0392;AF1=0.5;AC1=1;DP4=29,18,31,34;MQ=60;FQ=186;PV4=0.18,8.5e-26,1,0.46 GT:PL:GQ 0/1:213,0,255:99 chr1 152084175 . TTGCTGCTCGCGCCTCTCCTGCTGCTCGCGCCTCTCCT TTGCTGCTCGCGCCTCTCCTGCTGCTCGCGCCTCTCCTGCTGCTCGCGCCTCTCCT 217 . INDEL;DP=112;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,12,14,7;MQ=53;FQ=217;PV4=1,1,7.2e-15,0.13 GT:PL:GQ 0/1:255,0,255:99 chr1 152085505 . A C 222 . DP=56;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,19,34;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr1 152129087 . T C 109 . DP=174;VDB=0.0365;AF1=0.5;AC1=1;DP4=48,53,39,26;MQ=59;FQ=112;PV4=0.15,1.7e-60,0.00013,1 GT:PL:GQ 0/1:139,0,255:99 chr1 152129094 . A G 135 . DP=174;VDB=0.0399;AF1=0.5;AC1=1;DP4=52,52,37,29;MQ=58;FQ=138;PV4=0.53,1.2e-38,0.0001,0.14 GT:PL:GQ 0/1:165,0,255:99 chr1 152185500 . C G 139 . DP=21;VDB=0.0081;AF1=0.5;AC1=1;DP4=7,0,12,0;MQ=59;FQ=96;PV4=1,0.48,1,0.25 GT:PL:GQ 0/1:169,0,123:99 chr1 152185750 . G A 225 . DP=69;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,18,15,35;MQ=56;FQ=120;PV4=0.052,0.069,1,1 GT:PL:GQ 0/1:255,0,147:99 chr1 152185762 . C G 24 . DP=63;VDB=0.0099;AF1=0.5;AC1=1;DP4=15,36,0,12;MQ=56;FQ=27;PV4=0.054,0.38,0.0043,0.0024 GT:PL:GQ 0/1:54,0,255:57 chr1 152191709 . C G 225 . DP=58;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,17,11,20;MQ=60;FQ=225;PV4=1,0.0013,1,0.12 GT:PL:GQ 0/1:255,0,255:99 chr1 152191879 . G A 225 . DP=37;VDB=0.0190;AF1=0.5;AC1=1;DP4=10,8,14,5;MQ=60;FQ=225;PV4=0.31,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 152192114 . C T 91 . DP=25;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,12,4,7;MQ=59;FQ=94;PV4=0.14,1.2e-09,1,1 GT:PL:GQ 0/1:121,0,192:99 chr1 152192293 . C T 29 . DP=10;VDB=0.0019;AF1=0.5;AC1=1;DP4=5,0,4,1;MQ=56;FQ=32;PV4=1,7.9e-07,0.025,0.36 GT:PL:GQ 0/1:59,0,115:62 chr1 152192555 . T C 225 . DP=66;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,16,21,11;MQ=60;FQ=225;PV4=0.32,0.1,1,0.21 GT:PL:GQ 0/1:255,0,255:99 chr1 152192631 . C T 136 . DP=90;VDB=0.0380;AF1=0.5;AC1=1;DP4=29,23,21,15;MQ=60;FQ=139;PV4=0.83,1.1e-33,0.12,1 GT:PL:GQ 0/1:166,0,255:99 chr1 152192687 . T C 201 . DP=89;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,29,51;MQ=59;FQ=-268 GT:PL:GQ 1/1:234,241,0:99 chr1 152192825 . C T 155 . DP=59;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,14,18,7;MQ=58;FQ=158;PV4=0.27,4.1e-11,0.05,1 GT:PL:GQ 0/1:185,0,255:99 chr1 152192978 . T C 222 . DP=107;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,46,53;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 152193052 . A G 222 . DP=77;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,21,52;MQ=60;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr1 152193121 . G T 127 . DP=31;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,15,2,8;MQ=60;FQ=130;PV4=1,0.16,1,1 GT:PL:GQ 0/1:157,0,255:99 chr1 152193286 . G T 3.01 . DP=11;VDB=0.0050;AF1=0.4997;AC1=1;DP4=5,3,2,1;MQ=60;FQ=4.77;PV4=1,0.00015,1,1 GT:PL:GQ 0/1:30,0,182:28 chr1 152193291 . G T 32 . DP=17;VDB=0.0004;AF1=0.5;AC1=1;DP4=8,3,3,3;MQ=60;FQ=35;PV4=0.6,1e-06,1,1 GT:PL:GQ 0/1:62,0,212:65 chr1 152193544 . A G 139 . DP=64;VDB=0.0398;AF1=0.5;AC1=1;DP4=11,14,17,19;MQ=60;FQ=142;PV4=1,1.3e-25,1,0.36 GT:PL:GQ 0/1:169,0,255:99 chr1 152193547 . G A 176 . DP=63;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,31;MQ=59;FQ=-205 GT:PL:GQ 1/1:209,178,0:99 chr1 152193851 . C T 225 . DP=96;VDB=0.0398;AF1=0.5;AC1=1;DP4=20,30,18,24;MQ=60;FQ=225;PV4=0.83,0.1,0.14,0.13 GT:PL:GQ 0/1:255,0,255:99 chr1 152193990 . A G 46 . DP=32;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,14,0,18;MQ=60;FQ=49;PV4=1,2.8e-11,1,1 GT:PL:GQ 0/1:76,0,161:79 chr1 152195579 . G A 225 . DP=114;VDB=0.0345;AF1=0.5;AC1=1;DP4=40,8,50,12;MQ=59;FQ=225;PV4=0.81,0.073,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 152195728 . ATTTTTTTTTTT ATTTTTTTTTT,ATTTTTTTTT 51.5 . INDEL;DP=89;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,64;MQ=60;FQ=-243 GT:PL:GQ 1/1:92,208,0,87,119,69:99 chr1 152276149 . C T 211 . DP=40;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,7,17,4;MQ=51;FQ=214;PV4=0.29,0.022,0.38,1 GT:PL:GQ 0/1:241,0,255:99 chr1 152276671 . C T 9.52 . DP=6;VDB=0.0060;AF1=0.5;AC1=1;DP4=1,2,2,0;MQ=49;FQ=12.3;PV4=0.4,1,8.7e-05,1 GT:PL:GQ 0/1:39,0,71:41 chr1 152276772 . C A 178 . DP=80;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,19,19,15;MQ=55;FQ=181;PV4=0.82,1.5e-10,0.13,0.35 GT:PL:GQ 0/1:208,0,255:99 chr1 152276871 . A G 225 . DP=74;VDB=0.0400;AF1=0.5;AC1=1;DP4=20,21,11,19;MQ=55;FQ=225;PV4=0.34,0.29,3.3e-07,0.43 GT:PL:GQ 0/1:255,0,255:99 chr1 152276889 . A G 220 . DP=65;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,25,6,18;MQ=55;FQ=222;PV4=0.41,1,0.0025,0.15 GT:PL:GQ 0/1:250,0,255:99 chr1 152277168 . A G 63 . DP=9;VDB=0.0000;AF1=0.5;AC1=1;DP4=1,3,2,3;MQ=51;FQ=64.8;PV4=1,0.001,0.18,1 GT:PL:GQ 0/1:93,0,98:95 chr1 152277345 . C T 109 . DP=77;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,24,16,21;MQ=60;FQ=112;PV4=0.82,2.1e-27,1,1 GT:PL:GQ 0/1:139,0,255:99 chr1 152277396 . T C 113 . DP=60;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,20,9,19;MQ=60;FQ=116;PV4=1,1.6e-24,0.15,1 GT:PL:GQ 0/1:143,0,255:99 chr1 152278689 . C A 99 . DP=90;VDB=0.0216;AF1=0.5;AC1=1;DP4=25,7,51,4;MQ=28;FQ=102;PV4=0.09,4.2e-31,0.02,0.15 GT:PL:GQ 0/1:129,0,201:99 chr1 152278814 . C T 44 . DP=150;VDB=0.0271;AF1=0.5;AC1=1;DP4=35,72,16,27;MQ=40;FQ=47;PV4=0.7,2.5e-36,4.2e-08,1 GT:PL:GQ 0/1:74,0,255:77 chr1 152279019 . G A 121 . DP=96;VDB=0.0392;AF1=0.5;AC1=1;DP4=40,30,17,9;MQ=30;FQ=124;PV4=0.49,1,1,0.15 GT:PL:GQ 0/1:151,0,232:99 chr1 152279729 . C T 183 . DP=106;VDB=0.0365;AF1=0.5;AC1=1;DP4=30,26,23,26;MQ=57;FQ=186;PV4=0.56,1.7e-21,0.045,1 GT:PL:GQ 0/1:213,0,255:99 chr1 152279841 . G C 192 . DP=40;VDB=0.0164;AF1=0.5;AC1=1;DP4=4,17,3,15;MQ=59;FQ=195;PV4=1,0.048,0.062,1 GT:PL:GQ 0/1:222,0,255:99 chr1 152280782 . A G 225 . DP=119;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,37,20,43;MQ=54;FQ=225;PV4=1,2.4e-08,2.1e-10,1 GT:PL:GQ 0/1:255,0,255:99 chr1 152280864 . A G 17.1 . DP=8;VDB=0.0001;AF1=0.5;AC1=1;DP4=1,2,0,4;MQ=57;FQ=20.1;PV4=0.43,0.00027,0.22,1 GT:PL:GQ 0/1:47,0,83:50 chr1 152280900 . T G 32 . DP=11;VDB=0.0059;AF1=0.5;AC1=1;DP4=7,0,2,2;MQ=58;FQ=35;PV4=0.11,0.00051,0.1,1 GT:PL:GQ 0/1:62,0,143:65 chr1 152281007 . A G 86 . DP=77;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,18,18,10;MQ=59;FQ=89;PV4=0.81,2e-26,0.15,1 GT:PL:GQ 0/1:116,0,255:99 chr1 152281008 . A G 80 . DP=80;VDB=0.0399;AF1=0.5;AC1=1;DP4=29,20,18,10;MQ=59;FQ=83;PV4=0.81,2.5e-30,0.28,1 GT:PL:GQ 0/1:110,0,255:99 chr1 152281039 . G A 225 . DP=76;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,22,15,12;MQ=59;FQ=225;PV4=1,1,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 152281228 . C G 127 . DP=35;VDB=0.0081;AF1=0.5;AC1=1;DP4=10,16,6,3;MQ=58;FQ=130;PV4=0.25,0.4,0.0017,1 GT:PL:GQ 0/1:157,0,255:99 chr1 152281690 . C T 162 . DP=122;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,27,42,28;MQ=59;FQ=165;PV4=0.089,1.5e-29,0.43,1 GT:PL:GQ 0/1:192,0,255:99 chr1 152281948 . G A 225 . DP=50;VDB=0.0373;AF1=0.5;AC1=1;DP4=19,8,11,9;MQ=58;FQ=225;PV4=0.36,0.47,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 152282267 . G A 220 . DP=43;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,14,5,14;MQ=59;FQ=222;PV4=0.52,0.016,1,1 GT:PL:GQ 0/1:250,0,255:99 chr1 152282311 . C T 225 . DP=38;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,11,5,15;MQ=59;FQ=225;PV4=0.72,0.15,0.18,1 GT:PL:GQ 0/1:255,0,255:99 chr1 152282917 . G T 131 . DP=38;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,8,12,6;MQ=60;FQ=134;PV4=0.74,3e-14,1,0.15 GT:PL:GQ 0/1:161,0,255:99 chr1 152283283 . C T 182 . DP=23;VDB=0.0081;AF1=0.5;AC1=1;DP4=3,8,5,6;MQ=58;FQ=182;PV4=0.66,1,0.099,0.32 GT:PL:GQ 0/1:212,0,213:99 chr1 152283975 . A G 147 . DP=29;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,6,11,8;MQ=50;FQ=132;PV4=0.42,6.2e-09,1,1 GT:PL:GQ 0/1:177,0,159:99 chr1 152284854 . A G 225 . DP=44;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,7,16,7;MQ=57;FQ=225;PV4=1,0.31,1,0.25 GT:PL:GQ 0/1:255,0,255:99 chr1 152285076 . CACTGACTG CACTG 217 . INDEL;DP=69;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,14,18,19;MQ=56;FQ=217;PV4=0.61,0.00018,0.0064,1 GT:PL:GQ 0/1:255,0,255:99 chr1 152285099 . C T 69 . DP=47;VDB=0.0164;AF1=0.5;AC1=1;DP4=16,13,7,11;MQ=58;FQ=72;PV4=0.37,8.7e-24,1,1 GT:PL:GQ 0/1:99,0,255:99 chr1 152285930 . G A 137 . DP=50;VDB=0.0398;AF1=0.5;AC1=1;DP4=17,10,11,8;MQ=60;FQ=140;PV4=0.77,4.9e-13,0.12,1 GT:PL:GQ 0/1:167,0,255:99 chr1 152286002 . T C 225 . DP=74;VDB=0.0298;AF1=0.5;AC1=1;DP4=23,18,22,9;MQ=60;FQ=225;PV4=0.23,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 152286032 . C T 161 . DP=85;VDB=0.0365;AF1=0.5;AC1=1;DP4=25,15,27,16;MQ=60;FQ=164;PV4=1,1.3e-27,1,1 GT:PL:GQ 0/1:191,0,255:99 chr1 152286367 . C A 8.64 . DP=8;VDB=0.0040;AF1=0.5;AC1=1;DP4=4,1,3,0;MQ=60;FQ=11.3;PV4=1,0.00035,1,1 GT:PL:GQ 0/1:38,0,132:40 chr1 152323132 . G T 141 . DP=91;VDB=0.0345;AF1=0.5;AC1=1;DP4=28,22,23,15;MQ=60;FQ=144;PV4=0.83,4e-27,0.13,1 GT:PL:GQ 0/1:171,0,255:99 chr1 152325732 . G A 177 . DP=168;VDB=0.0400;AF1=0.5;AC1=1;DP4=46,34,51,33;MQ=60;FQ=180;PV4=0.75,5.3e-39,0.045,0.2 GT:PL:GQ 0/1:207,0,255:99 chr1 152328411 . A G 113 . DP=139;VDB=0.0380;AF1=0.5;AC1=1;DP4=37,47,32,17;MQ=47;FQ=116;PV4=0.02,2.5e-41,2.6e-31,1 GT:PL:GQ 0/1:143,0,255:99 chr1 152329435 . C T 139 . DP=228;VDB=0.0345;AF1=0.5;AC1=1;DP4=61,47,73,39;MQ=60;FQ=142;PV4=0.21,4.1e-94,1,1 GT:PL:GQ 0/1:169,0,255:99 chr1 152331240 . G A 51 . DP=53;VDB=0.0271;AF1=0.5;AC1=1;DP4=24,8,17,2;MQ=60;FQ=54;PV4=0.29,3.2e-24,1,1 GT:PL:GQ 0/1:81,0,255:84 chr1 152382062 . C T 127 . DP=38;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,0,15,4;MQ=60;FQ=130;PV4=0.11,4.8e-13,1,0.34 GT:PL:GQ 0/1:157,0,177:99 chr1 152382120 . C T 110 . DP=87;VDB=0.0365;AF1=0.5;AC1=1;DP4=37,4,34,11;MQ=60;FQ=113;PV4=0.092,2.2e-39,1,0.34 GT:PL:GQ 0/1:140,0,255:99 chr1 152384759 . A G 127 . DP=70;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,24,9,16;MQ=60;FQ=130;PV4=0.62,5.9e-24,0.099,1 GT:PL:GQ 0/1:157,0,255:99 chr1 152384833 . T C 13.2 . DP=20;VDB=0.0025;AF1=0.5;AC1=1;DP4=2,9,0,9;MQ=60;FQ=16.1;PV4=0.48,8.8e-11,1,1 GT:PL:GQ 0/1:43,0,208:46 chr1 152484129 . G A 225 . DP=78;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,27,15,20;MQ=59;FQ=225;PV4=0.64,0.0093,0.1,0.15 GT:PL:GQ 0/1:255,0,255:99 chr1 152487979 . C T 167 . DP=9;VDB=0.0241;AF1=1;AC1=2;DP4=0,0,4,4;MQ=60;FQ=-51 GT:PL:GQ 1/1:200,24,0:45 chr1 152488063 . C T 28 . DP=3;VDB=0.0215;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:60,9,0:16 chr1 152681543 . T C 139 . DP=90;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,73,11;MQ=57;FQ=-280 GT:PL:GQ 1/1:172,253,0:99 chr1 152681680 . CAGCTCTGGGGGCTG CAGCTCTGGGGGCTGCTGTAGCTCTGGGGGCTG 217 . INDEL;DP=103;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,31,9,16;MQ=53;FQ=217;PV4=0.4,0.055,2.3e-10,0.19 GT:PL:GQ 0/1:255,0,255:99 chr1 152692803 . A C 56 . DP=13;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,4,0,8;MQ=60;FQ=59;PV4=0.38,0.00011,1,0.46 GT:PL:GQ 0/1:86,0,122:89 chr1 152732436 . G C 166 . DP=67;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,16,24,12;MQ=60;FQ=169;PV4=0.14,4.3e-26,1,1 GT:PL:GQ 0/1:196,0,255:99 chr1 152733301 . T A 156 . DP=157;VDB=0.0392;AF1=0.5;AC1=1;DP4=53,39,29,32;MQ=59;FQ=159;PV4=0.25,8.4e-36,1,1 GT:PL:GQ 0/1:186,0,255:99 chr1 152944594 . C T 225 . DP=86;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,19,19,28;MQ=60;FQ=225;PV4=0.66,0.15,0.19,0.41 GT:PL:GQ 0/1:255,0,255:99 chr1 152957832 . C A 62 . DP=40;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,10,7,9;MQ=59;FQ=65;PV4=0.74,4.2e-17,0.12,0.22 GT:PL:GQ 0/1:92,0,255:95 chr1 152957887 . G A 82 . DP=50;VDB=0.0393;AF1=0.5;AC1=1;DP4=22,14,9,5;MQ=60;FQ=85;PV4=1,2.4e-09,1,0.39 GT:PL:GQ 0/1:112,0,255:99 chr1 152975495 . G A 142 . DP=76;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,11,25,12;MQ=60;FQ=145;PV4=1,7.1e-28,1,1 GT:PL:GQ 0/1:172,0,255:99 chr1 152975715 . C T 46 . DP=15;VDB=0.0033;AF1=0.5;AC1=1;DP4=5,4,3,3;MQ=60;FQ=49;PV4=1,9.4e-06,1,1 GT:PL:GQ 0/1:76,0,214:79 chr1 152975739 . T A 5.46 . DP=14;VDB=0.0060;AF1=0.4999;AC1=1;DP4=11,0,2,1;MQ=60;FQ=7.8;PV4=0.21,0.044,1,0.074 GT:PL:GQ 0/1:34,0,150:34 chr1 152975829 . A G 97 . DP=41;VDB=0.0118;AF1=0.5;AC1=1;DP4=15,11,11,4;MQ=60;FQ=100;PV4=0.5,5.7e-09,1,1 GT:PL:GQ 0/1:127,0,255:99 chr1 152975941 . C G 167 . DP=59;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,16,11,16;MQ=60;FQ=170;PV4=0.61,1e-20,0.14,1 GT:PL:GQ 0/1:197,0,255:99 chr1 153004721 . A T 51 . DP=19;VDB=0.0025;AF1=0.5;AC1=1;DP4=7,2,10,0;MQ=60;FQ=54;PV4=0.21,3.2e-09,1,1 GT:PL:GQ 0/1:81,0,189:84 chr1 153004778 . C T 65 . DP=37;VDB=0.0384;AF1=0.5;AC1=1;DP4=16,6,12,1;MQ=60;FQ=68;PV4=0.22,2.1e-16,1,0.036 GT:PL:GQ 0/1:95,0,255:98 chr1 153004809 . T C 127 . DP=51;VDB=0.0271;AF1=0.5;AC1=1;DP4=19,11,14,6;MQ=60;FQ=130;PV4=0.76,1.2e-09,0.11,0.44 GT:PL:GQ 0/1:157,0,255:99 chr1 153004848 . T C 104 . DP=64;VDB=0.0298;AF1=0.5;AC1=1;DP4=16,16,16,12;MQ=59;FQ=107;PV4=0.61,2.6e-17,0.28,1 GT:PL:GQ 0/1:134,0,255:99 chr1 153004853 . C T 118 . DP=63;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,15,19,11;MQ=58;FQ=121;PV4=0.43,9.9e-27,0.066,1 GT:PL:GQ 0/1:148,0,255:99 chr1 153004983 . C T 128 . DP=48;VDB=0.0384;AF1=0.5;AC1=1;DP4=17,6,13,8;MQ=56;FQ=131;PV4=0.52,1.9e-12,0.00038,0.47 GT:PL:GQ 0/1:158,0,255:99 chr1 153005156 . C T 225 . DP=82;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,34,10,23;MQ=59;FQ=225;PV4=0.61,0.069,0.41,1 GT:PL:GQ 0/1:255,0,255:99 chr1 153122310 . G A 26 . DP=10;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,1,5,0;MQ=60;FQ=29;PV4=1,5.4e-06,1,0.42 GT:PL:GQ 0/1:56,0,129:59 chr1 153233510 . A G 76 . DP=26;VDB=0.0066;AF1=0.5;AC1=1;DP4=3,11,1,10;MQ=60;FQ=79;PV4=0.6,0.00061,1,1 GT:PL:GQ 0/1:106,0,217:99 chr1 153271524 . C T 75 . DP=21;VDB=0.0066;AF1=0.5;AC1=1;DP4=9,1,10,1;MQ=60;FQ=78;PV4=1,1.7e-08,1,1 GT:PL:GQ 0/1:105,0,181:99 chr1 153277423 . C T 60 . DP=30;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,4,14,2;MQ=60;FQ=63;PV4=0.36,2.3e-14,1,0.43 GT:PL:GQ 0/1:90,0,239:93 chr1 153277660 . A T 18.1 . DP=9;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,3,0,6;MQ=57;FQ=21;PV4=1,3e-06,0.26,0.16 GT:PL:GQ 0/1:48,0,71:51 chr1 153279462 . TAAGA TA 156 . INDEL;DP=19;VDB=0.0066;AF1=0.5;AC1=1;DP4=9,3,7,0;MQ=58;FQ=159;PV4=0.26,0.00071,0.027,1 GT:PL:GQ 0/1:194,0,255:99 chr1 153282892 . C T 26 . DP=13;VDB=0.0033;AF1=0.5;AC1=1;DP4=6,0,6,0;MQ=60;FQ=29;PV4=1,2.5e-08,1,0.33 GT:PL:GQ 0/1:56,0,124:59 chr1 153283004 . C T 163 . DP=101;VDB=0.0380;AF1=0.5;AC1=1;DP4=29,21,24,25;MQ=60;FQ=166;PV4=0.42,1.2e-37,0.49,0.48 GT:PL:GQ 0/1:193,0,255:99 chr1 153313071 . A C 21 . DP=7;VDB=0.0082;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=24;PV4=1,0.0053,1,1 GT:PL:GQ 0/1:51,0,72:54 chr1 153314153 . C A 50 . DP=13;VDB=0.0325;AF1=0.5;AC1=1;DP4=3,3,6,1;MQ=58;FQ=53;PV4=0.27,6.3e-07,1,0.039 GT:PL:GQ 0/1:80,0,146:83 chr1 153315579 . A G 78 . DP=31;VDB=0.0393;AF1=0.5;AC1=1;DP4=10,4,10,4;MQ=59;FQ=81;PV4=1,5.5e-17,0.16,0.34 GT:PL:GQ 0/1:108,0,255:99 chr1 153315784 . T C 19.1 . DP=12;VDB=0.0218;AF1=0.5;AC1=1;DP4=1,7,1,3;MQ=60;FQ=22;PV4=1,1e-06,1,1 GT:PL:GQ 0/1:49,0,182:52 chr1 153320334 . T C 83 . DP=61;VDB=0.0380;AF1=0.5;AC1=1;DP4=23,9,18,10;MQ=60;FQ=86;PV4=0.59,8.8e-30,1,0.39 GT:PL:GQ 0/1:113,0,255:99 chr1 153320372 . T G 225 . DP=71;VDB=0.0400;AF1=0.5;AC1=1;DP4=25,14,19,12;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 153320581 . T C 9.55 . DP=4;VDB=0.0080;AF1=0.504;AC1=1;DP4=0,1,0,3;MQ=60;FQ=-9.53;PV4=1,0.041,1,0.49 GT:PL:GQ 0/1:39,0,18:22 chr1 153410822 . C A 105 . DP=28;VDB=0.0140;AF1=0.5;AC1=1;DP4=2,9,2,14;MQ=60;FQ=108;PV4=1,3.8e-08,1,0.43 GT:PL:GQ 0/1:135,0,183:99 chr1 153412392 . T G 182 . DP=40;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,13,1,18;MQ=60;FQ=185;PV4=0.044,1,0.16,1 GT:PL:GQ 0/1:212,0,255:99 chr1 153431406 . C G 30 . DP=16;VDB=0.0027;AF1=0.5;AC1=1;DP4=9,3,3,1;MQ=60;FQ=33;PV4=1,0.1,1,1 GT:PL:GQ 0/1:60,0,221:63 chr1 153431561 . T C 121 . DP=90;VDB=0.0271;AF1=0.5;AC1=1;DP4=15,28,17,28;MQ=59;FQ=124;PV4=0.83,5.8e-28,0.17,1 GT:PL:GQ 0/1:151,0,255:99 chr1 153535862 . A G 5.46 . DP=43;VDB=0.0216;AF1=0.4999;AC1=1;DP4=11,3,8,0;MQ=54;FQ=7.8;PV4=0.27,1.4e-10,1,1 GT:PL:GQ 0/1:34,0,184:34 chr1 153587308 . C T 12.3 . DP=18;VDB=0.0033;AF1=0.5;AC1=1;DP4=11,1,4,1;MQ=60;FQ=15.1;PV4=0.51,1.7e-08,1,0.32 GT:PL:GQ 0/1:42,0,204:44 chr1 153588208 . G A 8.64 . DP=13;VDB=0.0033;AF1=0.5;AC1=1;DP4=6,0,7,0;MQ=60;FQ=11.3;PV4=1,1.1e-09,1,1 GT:PL:GQ 0/1:38,0,122:40 chr1 153588279 . G A 98 . DP=75;VDB=0.0298;AF1=0.5;AC1=1;DP4=26,6,28,11;MQ=60;FQ=101;PV4=0.41,5.1e-35,0.18,1 GT:PL:GQ 0/1:128,0,255:99 chr1 153588340 . C T 134 . DP=98;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,27,26,18;MQ=60;FQ=137;PV4=0.41,1.4e-28,1,1 GT:PL:GQ 0/1:164,0,255:99 chr1 153604029 . C T 125 . DP=64;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,27,33;MQ=60;FQ=-208 GT:PL:GQ 1/1:158,181,0:99 chr1 153604112 . G A 225 . DP=57;VDB=0.0398;AF1=0.5;AC1=1;DP4=19,7,22,9;MQ=60;FQ=225;PV4=1,0.0019,1,0.25 GT:PL:GQ 0/1:255,0,255:99 chr1 153609039 . T C 67 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,2,9,3;MQ=60;FQ=70;PV4=0.63,3.2e-14,1,0.18 GT:PL:GQ 0/1:97,0,231:99 chr1 153636472 . T C 77 . DP=17;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,13,0;MQ=58;FQ=-66 GT:PL:GQ 1/1:110,39,0:75 chr1 153636860 . A G 108 . DP=105;VDB=0.0380;AF1=0.5;AC1=1;DP4=39,26,25,13;MQ=60;FQ=111;PV4=0.67,2.8e-37,0.096,0.43 GT:PL:GQ 0/1:138,0,255:99 chr1 153637617 . G A 65 . DP=26;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,4,8,2;MQ=60;FQ=68;PV4=1,1.3e-07,1,1 GT:PL:GQ 0/1:95,0,243:98 chr1 153642372 . G T 225 . DP=29;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,6,4,11;MQ=60;FQ=223;PV4=0.26,0.28,1,1 GT:PL:GQ 0/1:255,0,252:99 chr1 153642835 . G C 183 . DP=9;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,2,6;MQ=60;FQ=-51 GT:PL:GQ 1/1:216,24,0:45 chr1 153656352 . T G 72 . DP=8;VDB=0.0161;AF1=0.5;AC1=1;DP4=0,4,2,2;MQ=60;FQ=50;PV4=0.43,1,1,1 GT:PL:GQ 0/1:102,0,77:80 chr1 153661374 . CGG CG 188 . INDEL;DP=32;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,4,13,4;MQ=59;FQ=191;PV4=1,0.099,1,1 GT:PL:GQ 0/1:226,0,241:99 chr1 153743234 . T C 198 . DP=48;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,24,19;MQ=60;FQ=-156 GT:PL:GQ 1/1:231,129,0:99 chr1 153743289 . C G 61 . DP=40;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,19,4,7;MQ=60;FQ=64;PV4=1,1.3e-09,1,0.45 GT:PL:GQ 0/1:91,0,255:94 chr1 153745380 . G A 24 . DP=18;VDB=0.0066;AF1=0.5;AC1=1;DP4=12,0,6,0;MQ=60;FQ=27;PV4=1,2e-07,1,1 GT:PL:GQ 0/1:54,0,160:57 chr1 153906397 . A G 166 . DP=43;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,17,9,13;MQ=60;FQ=169;PV4=0.091,1.5e-10,1,0.014 GT:PL:GQ 0/1:196,0,242:99 chr1 153913684 . C A 44 . DP=23;VDB=0.0398;AF1=0.5;AC1=1;DP4=10,3,9,1;MQ=60;FQ=47;PV4=0.6,3.1e-07,1,0.16 GT:PL:GQ 0/1:74,0,235:77 chr1 153913770 . A G 106 . DP=45;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,7,13,11;MQ=60;FQ=109;PV4=0.76,6.1e-11,1,1 GT:PL:GQ 0/1:136,0,255:99 chr1 153954674 . T C 66 . DP=13;VDB=0.0305;AF1=0.5;AC1=1;DP4=4,4,1,3;MQ=60;FQ=69;PV4=0.58,1,1,0.44 GT:PL:GQ 0/1:96,0,165:99 chr1 153964396 . CA CAAA 217 . INDEL;DP=117;VDB=0.0365;AF1=0.5;AC1=1;DP4=53,12,41,10;MQ=60;FQ=217;PV4=1,1,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 154026642 . A G 134 . DP=25;VDB=0.0019;AF1=0.5;AC1=1;DP4=12,1,11,1;MQ=60;FQ=137;PV4=1,0.12,1,1 GT:PL:GQ 0/1:164,0,193:99 chr1 154061855 . T G 222 . DP=29;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,17,10;MQ=59;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 154108387 . G A 222 . DP=84;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,28,52;MQ=59;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr1 154243097 . G A 56.1 . DP=7;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:89,21,0:39 chr1 154245142 . T G 141 . DP=17;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,14,3;MQ=60;FQ=-78 GT:PL:GQ 1/1:174,51,0:99 chr1 154304374 . G T 13.2 . DP=9;VDB=0.0086;AF1=0.5;AC1=1;DP4=5,2,1,1;MQ=60;FQ=16.1;PV4=1,0.35,1,1 GT:PL:GQ 0/1:43,0,172:46 chr1 154305010 . A G 52 . DP=8;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:85,24,0:45 chr1 154310048 . C G 222 . DP=65;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,29;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 154316996 . G A 98 . DP=55;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,12,15,10;MQ=60;FQ=101;PV4=1,4.8e-22,0.14,0.44 GT:PL:GQ 0/1:128,0,255:99 chr1 154317153 . C T 222 . DP=51;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,19,31;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 154317418 . T C 62.1 . DP=8;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:95,21,0:39 chr1 154321072 . A G 62 . DP=3;VDB=0.0199;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:94,9,0:16 chr1 154378049 . G A 10.4 . DP=3;VDB=0.0174;AF1=0.5016;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-6.23;PV4=1,0.24,1,1 GT:PL:GQ 0/1:40,0,22:26 chr1 154401679 . G A 157 . DP=47;VDB=0.0244;AF1=0.5;AC1=1;DP4=18,5,15,8;MQ=60;FQ=160;PV4=0.51,1.9e-11,1,1 GT:PL:GQ 0/1:187,0,255:99 chr1 154401972 . T C 202 . DP=58;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,15,42;MQ=60;FQ=-199 GT:PL:GQ 1/1:235,172,0:99 chr1 154407713 . T C 96 . DP=17;VDB=0.0053;AF1=0.5;AC1=1;DP4=3,7,0,7;MQ=60;FQ=99;PV4=0.23,0.41,1,1 GT:PL:GQ 0/1:126,0,216:99 chr1 154426970 . A C 210 . DP=27;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,4,8,5;MQ=59;FQ=213;PV4=0.69,0.36,1,1 GT:PL:GQ 0/1:240,0,249:99 chr1 154437896 . T C 222 . DP=34;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,2,31;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 154442960 . G A 57 . DP=42;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,21,3,14;MQ=59;FQ=60;PV4=0.68,1.9e-14,1,1 GT:PL:GQ 0/1:87,0,255:90 chr1 154459197 . C G 148 . DP=27;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,20;MQ=59;FQ=-108 GT:PL:GQ 1/1:181,81,0:99 chr1 154474131 . C G 138 . DP=57;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,19,9,18;MQ=60;FQ=141;PV4=1,9.6e-17,1,1 GT:PL:GQ 0/1:168,0,255:99 chr1 154479657 . C CAT 214 . INDEL;DP=8;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,6,2;MQ=54;FQ=-58.5 GT:PL:GQ 1/1:255,24,0:45 chr1 154479670 . C T 91 . DP=10;VDB=0.0399;AF1=0.5001;AC1=1;DP4=2,0,6,2;MQ=55;FQ=9.53;PV4=1,0.00012,1,0.2 GT:PL:GQ 0/1:121,0,36:39 chr1 154492702 . G A 83 . DP=25;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,1,10,2;MQ=60;FQ=86;PV4=1,2.1e-10,1,0.44 GT:PL:GQ 0/1:113,0,194:99 chr1 154493721 . T C 147 . DP=15;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,12,3;MQ=60;FQ=-72 GT:PL:GQ 1/1:180,45,0:87 chr1 154514331 . C A 3.54 . DP=6;VDB=0.0222;AF1=0.4998;AC1=1;DP4=3,0,2,0;MQ=60;FQ=5.47;PV4=1,2.3e-05,1,0.25 GT:PL:GQ 0/1:31,0,89:30 chr1 154514338 . A T 50 . DP=10;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,1,6,0;MQ=60;FQ=53;PV4=0.4,0.0074,1,1 GT:PL:GQ 0/1:80,0,101:83 chr1 154516477 . G A 157 . DP=95;VDB=0.0399;AF1=0.5;AC1=1;DP4=23,31,14,24;MQ=59;FQ=160;PV4=0.67,4.1e-19,0.018,1 GT:PL:GQ 0/1:187,0,255:99 chr1 154516571 . T C 222 . DP=71;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,26,41;MQ=58;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr1 154523215 . C T 70 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:102,9,0:16 chr1 154523588 . T G 13.9 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr1 154523990 . G T 159 . DP=29;VDB=0.0373;AF1=0.5;AC1=1;DP4=2,7,9,9;MQ=60;FQ=143;PV4=0.23,7.2e-11,1,0.46 GT:PL:GQ 0/1:189,0,170:99 chr1 154524973 . A G 102 . DP=41;VDB=0.0393;AF1=0.5;AC1=1;DP4=12,12,6,9;MQ=58;FQ=105;PV4=0.74,0.0011,1,0.41 GT:PL:GQ 0/1:132,0,255:99 chr1 154528086 . T C 136 . DP=17;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,12;MQ=60;FQ=-75 GT:PL:GQ 1/1:169,48,0:93 chr1 154544651 . G T 8.64 . DP=6;VDB=0.0098;AF1=0.5;AC1=1;DP4=2,1,0,3;MQ=60;FQ=11.3;PV4=0.4,0.00088,1,0.46 GT:PL:GQ 0/1:38,0,84:40 chr1 154557685 . C T 95 . DP=35;VDB=0.0190;AF1=0.5;AC1=1;DP4=14,1,16,3;MQ=60;FQ=98;PV4=0.61,9.9e-16,1,1 GT:PL:GQ 0/1:125,0,199:99 chr1 154561261 . G C 64 . DP=8;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,8;MQ=57;FQ=-51 GT:PL:GQ 1/1:97,24,0:45 chr1 154573967 . T C 193 . DP=129;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,50,72;MQ=60;FQ=-282 GT:PL:GQ 1/1:226,255,0:99 chr1 154574820 . T C 222 . DP=58;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,29;MQ=59;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 154575040 . C T 222 . DP=39;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,24;MQ=58;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 154580458 . C A 148 . DP=119;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,35,13,46;MQ=60;FQ=151;PV4=0.51,2.3e-17,1,1 GT:PL:GQ 0/1:178,0,255:99 chr1 154600372 . A G 184 . DP=20;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,13,5;MQ=60;FQ=-81 GT:PL:GQ 1/1:217,54,0:99 chr1 154744807 . C G 225 . DP=82;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,30,9,33;MQ=60;FQ=225;PV4=0.77,0.057,1,0.18 GT:PL:GQ 0/1:255,0,255:99 chr1 154744852 . A G 194 . DP=35;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,14,2,17;MQ=60;FQ=170;PV4=1,0.18,1,0.15 GT:PL:GQ 0/1:224,0,197:99 chr1 154744937 . C T 42.8 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:74,6,0:10 chr1 154832290 . C T 211 . DP=38;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,16,2,17;MQ=60;FQ=177;PV4=1,1,1,1 GT:PL:GQ 0/1:241,0,204:99 chr1 154832304 . T C 42 . DP=31;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,15,0,13;MQ=60;FQ=45;PV4=0.49,4.5e-16,1,1 GT:PL:GQ 0/1:72,0,241:75 chr1 154832322 . A C 113 . DP=20;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,16;MQ=60;FQ=-78 GT:PL:GQ 1/1:146,51,0:99 chr1 154842282 . C A 7.8 . DP=3;VDB=0.0196;AF1=0.5001;AC1=1;DP4=1,0,0,2;MQ=42;FQ=4.79;PV4=0.33,0.15,0,0.05 GT:PL:GQ 0/1:37,0,31:34 chr1 154917701 . A G 210 . DP=23;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,1,18;MQ=60;FQ=-84 GT:PL:GQ 1/1:243,57,0:99 chr1 154919080 . C T 105 . DP=55;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,23,7,19;MQ=60;FQ=108;PV4=0.33,1.9e-22,1,0.24 GT:PL:GQ 0/1:135,0,255:99 chr1 154938214 . C G 70 . DP=25;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,1,7,3;MQ=58;FQ=73;PV4=0.27,2.9e-11,1,1 GT:PL:GQ 0/1:100,0,197:99 chr1 154987526 . C T 97 . DP=102;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,26,27,23;MQ=60;FQ=100;PV4=0.69,2.5e-37,0.16,1 GT:PL:GQ 0/1:127,0,255:99 chr1 154988957 . A G 225 . DP=64;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,13,13,21;MQ=60;FQ=225;PV4=0.43,1,0.19,1 GT:PL:GQ 0/1:255,0,255:99 chr1 155001929 . T C 18.1 . DP=8;VDB=0.0180;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=21;PV4=1,0.0001,1,0.21 GT:PL:GQ 0/1:48,0,98:51 chr1 155006091 . A G 129 . DP=103;VDB=0.0400;AF1=0.5;AC1=1;DP4=29,21,25,18;MQ=60;FQ=132;PV4=1,8.2e-21,1,1 GT:PL:GQ 0/1:159,0,255:99 chr1 155006999 . C T 102 . DP=71;VDB=0.0398;AF1=0.5;AC1=1;DP4=19,20,21,9;MQ=60;FQ=105;PV4=0.09,1.5e-31,0.13,0.22 GT:PL:GQ 0/1:132,0,255:99 chr1 155019710 . A C 112 . DP=40;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,6,11,6;MQ=60;FQ=115;PV4=0.73,3.2e-11,1,1 GT:PL:GQ 0/1:142,0,255:99 chr1 155026942 . A C 222 . DP=36;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,13,21;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 155028522 . G A 177 . DP=101;VDB=0.0399;AF1=0.5;AC1=1;DP4=31,19,31,14;MQ=60;FQ=180;PV4=0.52,1.8e-12,0.15,0.4 GT:PL:GQ 0/1:207,0,255:99 chr1 155030557 . A C 187 . DP=169;VDB=0.0392;AF1=0.5;AC1=1;DP4=40,48,37,39;MQ=60;FQ=190;PV4=0.75,1.2e-46,0.14,0.24 GT:PL:GQ 0/1:217,0,255:99 chr1 155031376 . C T 65 . DP=16;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,6,2,7;MQ=60;FQ=68;PV4=1,9.7e-06,1,1 GT:PL:GQ 0/1:95,0,148:98 chr1 155033317 . T C 170 . DP=27;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,21;MQ=59;FQ=-105 GT:PL:GQ 1/1:203,78,0:99 chr1 155033918 . C T 74 . DP=36;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,3,12,5;MQ=60;FQ=77;PV4=0.69,6.5e-13,1,0.4 GT:PL:GQ 0/1:104,0,236:99 chr1 155057499 . A G 76 . DP=16;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,15,0;MQ=58;FQ=-72 GT:PL:GQ 1/1:109,45,0:87 chr1 155105882 . T G 115 . DP=51;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,4,18,14;MQ=60;FQ=118;PV4=0.22,7e-20,1,1 GT:PL:GQ 0/1:145,0,227:99 chr1 155106550 . A G 222 . DP=54;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,12,37;MQ=60;FQ=-157;PV4=0.26,1,1,1 GT:PL:GQ 1/1:255,130,0:99 chr1 155142210 . A G 187 . DP=74;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,29,43;MQ=59;FQ=-244 GT:PL:GQ 1/1:220,217,0:99 chr1 155142229 . G A 222 . DP=75;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,31,40;MQ=59;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr1 155148520 . G A 225 . DP=62;VDB=0.0271;AF1=0.5;AC1=1;DP4=24,9,17,9;MQ=59;FQ=225;PV4=0.58,0.11,0.054,1 GT:PL:GQ 0/1:255,0,255:99 chr1 155148781 . G A 19 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:51,9,0:15 chr1 155149718 . G A 222 . DP=162;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,38,116;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 155162067 . C T 194 . DP=54;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,30;MQ=59;FQ=-178 GT:PL:GQ 1/1:227,151,0:99 chr1 155178782 . A T 208 . DP=20;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,2,16;MQ=60;FQ=-81 GT:PL:GQ 1/1:241,54,0:99 chr1 155181843 . G T 158 . DP=9;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,8,1;MQ=56;FQ=-54 GT:PL:GQ 1/1:191,27,0:51 chr1 155182164 . C T 176 . DP=38;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,28,8;MQ=51;FQ=-135 GT:PL:GQ 1/1:209,108,0:99 chr1 155184975 . A G 163 . DP=65;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,26,33;MQ=46;FQ=-205 GT:PL:GQ 1/1:196,178,0:99 chr1 155186729 . T C 124 . DP=33;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,7,24;MQ=55;FQ=-120 GT:PL:GQ 1/1:157,93,0:99 chr1 155186742 . G A 186 . DP=21;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,15;MQ=54;FQ=-87 GT:PL:GQ 1/1:219,60,0:99 chr1 155203060 . G A 141 . DP=31;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,8,5,11;MQ=43;FQ=144;PV4=0.47,5e-08,0.47,1 GT:PL:GQ 0/1:171,0,250:99 chr1 155205669 . G T 222 . DP=70;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,39;MQ=47;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr1 155206341 . T G 75 . DP=33;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,15,3,14;MQ=60;FQ=78;PV4=0.6,6e-15,1,1 GT:PL:GQ 0/1:105,0,198:99 chr1 155209360 . C T 30 . DP=4;VDB=0.0196;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=28.9;PV4=1,1,1,1 GT:PL:GQ 0/1:60,0,58:59 chr1 155218067 . C T 225 . DP=68;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,13,20,12;MQ=60;FQ=225;PV4=1,3.1e-05,1,0.1 GT:PL:GQ 0/1:255,0,255:99 chr1 155218168 . T C 115 . DP=70;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,23,14,17;MQ=60;FQ=118;PV4=0.32,7e-25,0.15,1 GT:PL:GQ 0/1:145,0,255:99 chr1 155224091 . C A 97 . DP=27;VDB=0.0343;AF1=0.5;AC1=1;DP4=11,5,8,3;MQ=60;FQ=100;PV4=1,1.1e-06,1,0.00089 GT:PL:GQ 0/1:127,0,255:99 chr1 155224301 . C A 84 . DP=34;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,12,4,10;MQ=59;FQ=87;PV4=0.72,8.5e-07,0.13,1 GT:PL:GQ 0/1:114,0,255:99 chr1 155230131 . C T 34 . DP=28;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,5,6,4;MQ=58;FQ=37;PV4=0.68,5.5e-09,0.34,1 GT:PL:GQ 0/1:64,0,255:67 chr1 155231545 . T G 69 . DP=38;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,18,4,12;MQ=60;FQ=72;PV4=0.16,2.2e-17,1,0.045 GT:PL:GQ 0/1:99,0,210:99 chr1 155239624 . G A 62 . DP=13;VDB=0.0006;AF1=0.5;AC1=1;DP4=1,4,1,7;MQ=60;FQ=65;PV4=1,7.3e-06,1,0.27 GT:PL:GQ 0/1:92,0,118:95 chr1 155257492 . C G 139 . DP=25;VDB=0.0033;AF1=0.5;AC1=1;DP4=12,3,9,1;MQ=60;FQ=142;PV4=0.63,0.41,1,1 GT:PL:GQ 0/1:169,0,244:99 chr1 155260350 . A G 47 . DP=39;VDB=0.0081;AF1=0.5;AC1=1;DP4=18,4,15,2;MQ=58;FQ=50;PV4=0.68,2e-19,0.21,1 GT:PL:GQ 0/1:77,0,255:80 chr1 155260383 . G T 197 . DP=66;VDB=0.0345;AF1=0.5;AC1=1;DP4=22,16,22,3;MQ=59;FQ=200;PV4=0.013,1,0.07,1 GT:PL:GQ 0/1:227,0,255:99 chr1 155265177 . A G 117 . DP=55;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,20,7,13;MQ=60;FQ=120;PV4=1,7.7e-15,1,1 GT:PL:GQ 0/1:147,0,255:99 chr1 155269776 . A G 41 . DP=20;VDB=0.0164;AF1=0.5;AC1=1;DP4=10,0,9,0;MQ=60;FQ=44;PV4=1,1.6e-08,1,0.24 GT:PL:GQ 0/1:71,0,159:74 chr1 155289545 . T G 206 . DP=48;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,21,7,10;MQ=60;FQ=209;PV4=0.55,0.42,1,1 GT:PL:GQ 0/1:236,0,255:99 chr1 155294274 . A G 222 . DP=39;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,7,28;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 155294772 . A G 197 . DP=25;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,12,12;MQ=59;FQ=-99 GT:PL:GQ 1/1:230,72,0:99 chr1 155313047 . T C 170 . DP=19;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,14,4;MQ=60;FQ=-81 GT:PL:GQ 1/1:203,54,0:99 chr1 155408635 . T C 222 . DP=58;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,30,25;MQ=59;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 155429725 . A C 22 . DP=9;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,4,1,4;MQ=60;FQ=25;PV4=1,7.2e-05,1,1 GT:PL:GQ 0/1:52,0,93:55 chr1 155532316 . T C 172 . DP=34;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,20;MQ=50;FQ=-123 GT:PL:GQ 1/1:205,96,0:99 chr1 155532325 . T C 162 . DP=32;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,13,19;MQ=49;FQ=-123 GT:PL:GQ 1/1:195,96,0:99 chr1 155532332 . T C 222 . DP=32;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,12,17;MQ=50;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 155532341 . T C 141 . DP=35;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,13,15;MQ=55;FQ=-111 GT:PL:GQ 1/1:174,84,0:99 chr1 155581757 . A G 44.5 . DP=4;VDB=0.0041;AF1=1;AC1=2;DP4=0,0,4,0;MQ=26;FQ=-39 GT:PL:GQ 1/1:77,12,0:21 chr1 155618415 . CTTTT CTTT 165 . INDEL;DP=48;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,36,9;MQ=47;FQ=-170 GT:PL:GQ 1/1:206,135,0:99 chr1 155737385 . C T 3.98 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=30;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr1 155755097 . G A 222 . DP=60;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,15,43;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 155785578 . CAACTAAC CAAC 214 . INDEL;DP=66;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,54,10;MQ=52;FQ=-228 GT:PL:GQ 1/1:255,193,0:99 chr1 155823002 . T C 67 . DP=14;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:100,42,0:81 chr1 155837865 . G C 222 . DP=52;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,21;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 155838267 . T C 222 . DP=70;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,52,14;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr1 155850558 . T C 152 . DP=12;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:185,30,0:57 chr1 155870416 . G A 145 . DP=48;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,13,14;MQ=60;FQ=-108 GT:PL:GQ 1/1:178,81,0:99 chr1 155880573 . C G 197 . DP=79;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,15,59;MQ=60;FQ=-250 GT:PL:GQ 1/1:230,223,0:99 chr1 155891045 . A C 67 . DP=18;VDB=0.0025;AF1=1;AC1=2;DP4=1,0,17,0;MQ=59;FQ=-52;PV4=1,0.001,1,1 GT:PL:GQ 1/1:100,25,0:47 chr1 155899020 . A T 119 . DP=100;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,29,18;MQ=59;FQ=-168 GT:PL:GQ 1/1:152,141,0:99 chr1 155903310 . T C 28 . DP=3;VDB=0.0030;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:60,9,0:16 chr1 155903408 . C T 140 . DP=53;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,28,14;MQ=59;FQ=-153 GT:PL:GQ 1/1:173,126,0:99 chr1 155904177 . T C 222 . DP=213;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,127,76;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 155912486 . T C 222 . DP=76;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,61;MQ=60;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr1 155917880 . T A 222 . DP=87;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,35,43;MQ=60;FQ=-262 GT:PL:GQ 1/1:255,235,0:99 chr1 155928232 . T C 90.1 . DP=15;VDB=0.0066;AF1=1;AC1=2;DP4=1,0,1,13;MQ=58;FQ=-48;PV4=0.13,0.42,1,1 GT:PL:GQ 1/1:123,21,0:39 chr1 155928242 . C T 86 . DP=10;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,9;MQ=60;FQ=-57 GT:PL:GQ 1/1:119,30,0:57 chr1 155931368 . G A 58.3 . DP=5;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:91,15,0:27 chr1 155955076 . A G 222 . DP=30;VDB=0.0343;AF1=1;AC1=2;DP4=0,0,16,10;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 156011444 . T C 225 . DP=40;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,9,14,6;MQ=58;FQ=225;PV4=0.51,1,0.28,0.19 GT:PL:GQ 0/1:255,0,255:99 chr1 156132909 . GCACA GCA 217 . INDEL;DP=22;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,7,3,7;MQ=60;FQ=217;PV4=0.67,1.2e-20,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 156133038 . T C 19.1 . DP=5;VDB=0.0188;AF1=0.5;AC1=1;DP4=0,3,0,2;MQ=60;FQ=22;PV4=1,1,1,1 GT:PL:GQ 0/1:49,0,73:52 chr1 156146218 . C T 187 . DP=58;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,32,22;MQ=59;FQ=-190 GT:PL:GQ 1/1:220,163,0:99 chr1 156169610 . A G 142 . DP=33;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,3,15,0;MQ=60;FQ=145;PV4=0.23,1,1,1 GT:PL:GQ 0/1:172,0,245:99 chr1 156202173 . A G 69 . DP=32;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,12,8,4;MQ=59;FQ=72;PV4=0.15,2.2e-10,1,1 GT:PL:GQ 0/1:99,0,255:99 chr1 156206121 . G A 155 . DP=57;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,11,13,11;MQ=60;FQ=158;PV4=0.42,4.1e-09,1,0.49 GT:PL:GQ 0/1:185,0,255:99 chr1 156213921 . C T 173 . DP=82;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,23,22,17;MQ=59;FQ=176;PV4=0.38,2.3e-20,0.47,1 GT:PL:GQ 0/1:203,0,255:99 chr1 156215899 . G A 99 . DP=32;VDB=0.0271;AF1=0.5;AC1=1;DP4=16,3,9,4;MQ=59;FQ=102;PV4=0.4,2.6e-10,1,1 GT:PL:GQ 0/1:129,0,254:99 chr1 156220056 . T C 45 . DP=19;VDB=0.0025;AF1=0.5;AC1=1;DP4=10,0,9,0;MQ=60;FQ=48;PV4=1,2.6e-12,1,1 GT:PL:GQ 0/1:75,0,162:78 chr1 156230141 . T A 45 . DP=9;VDB=0.0287;AF1=0.5;AC1=1;DP4=5,0,3,0;MQ=60;FQ=48;PV4=1,1,1,0.24 GT:PL:GQ 0/1:75,0,111:78 chr1 156230206 . C A 71 . DP=19;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,4,7,4;MQ=60;FQ=74;PV4=0.66,2.6e-10,1,0.18 GT:PL:GQ 0/1:101,0,171:99 chr1 156231266 . G C 86 . DP=34;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,15,2,13;MQ=59;FQ=89;PV4=0.67,1.5e-13,1,1 GT:PL:GQ 0/1:116,0,255:99 chr1 156233479 . T C 28 . DP=16;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,8,1,5;MQ=60;FQ=31;PV4=1,2e-09,1,0.35 GT:PL:GQ 0/1:58,0,177:61 chr1 156255833 . G C 36.3 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:69,15,0:27 chr1 156261491 . G C 38 . DP=19;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,7,1,8;MQ=60;FQ=41;PV4=0.58,6.3e-07,1,0.43 GT:PL:GQ 0/1:68,0,208:71 chr1 156279210 . T C 133 . DP=29;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,2,27;MQ=60;FQ=-114 GT:PL:GQ 1/1:166,87,0:99 chr1 156287360 . C T 118 . DP=21;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,6,4,8;MQ=60;FQ=121;PV4=1,2.5e-07,1,0.26 GT:PL:GQ 0/1:148,0,171:99 chr1 156287403 . T C 39 . DP=10;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,5,1,4;MQ=60;FQ=42;PV4=1,2.5e-07,1,1 GT:PL:GQ 0/1:69,0,119:72 chr1 156303527 . C A 25 . DP=3;VDB=0.0217;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:57,9,0:15 chr1 156316741 . T C 57 . DP=33;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,12,2,8;MQ=60;FQ=60;PV4=0.26,3.2e-08,1,1 GT:PL:GQ 0/1:87,0,255:90 chr1 156347131 . G A 222 . DP=79;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,42,34;MQ=60;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr1 156351066 . C A 198 . DP=52;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,40,8;MQ=60;FQ=-171 GT:PL:GQ 1/1:231,144,0:99 chr1 156446242 . C A 133 . DP=29;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,7;MQ=60;FQ=-108 GT:PL:GQ 1/1:166,81,0:99 chr1 156446450 . C T 96 . DP=14;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,14;MQ=60;FQ=-69 GT:PL:GQ 1/1:129,42,0:81 chr1 156446903 . T C 222 . DP=49;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,33,13;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 156450740 . G A 196 . DP=10;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,8;MQ=60;FQ=-57 GT:PL:GQ 1/1:229,30,0:57 chr1 156452870 . G A 69 . DP=20;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,17,0;MQ=60;FQ=-78 GT:PL:GQ 1/1:102,51,0:99 chr1 156453096 . G T 66 . DP=54;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,22,5,15;MQ=60;FQ=69;PV4=1,6.5e-14,1,0.066 GT:PL:GQ 0/1:96,0,255:99 chr1 156496188 . A G 76 . DP=9;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:109,24,0:45 chr1 156503541 . T C 13.2 . DP=3;VDB=0.0098;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:45,9,0:14 chr1 156509552 . C G 112 . DP=24;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,23,1;MQ=60;FQ=-99 GT:PL:GQ 1/1:145,72,0:99 chr1 156520173 . T A 222 . DP=36;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,14,21;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 156521547 . C T 181 . DP=18;VDB=0.0118;AF1=0.5;AC1=1;DP4=5,0,8,4;MQ=60;FQ=63;PV4=0.26,0.045,1,0.19 GT:PL:GQ 0/1:211,0,90:93 chr1 156526234 . C T 110 . DP=8;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,6,2;MQ=60;FQ=-51 GT:PL:GQ 1/1:143,24,0:45 chr1 156526387 . C G 222 . DP=37;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,19,16;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 156526444 . T C 190 . DP=30;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,11,19;MQ=60;FQ=-117 GT:PL:GQ 1/1:223,90,0:99 chr1 156531871 . A G 222 . DP=35;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,10,23;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 156532344 . T G 116 . DP=30;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,25,2;MQ=60;FQ=-108 GT:PL:GQ 1/1:149,81,0:99 chr1 156532908 . C A 144 . DP=43;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,20;MQ=59;FQ=-132 GT:PL:GQ 1/1:177,105,0:99 chr1 156532977 . T C 163 . DP=46;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,20,21;MQ=59;FQ=-150 GT:PL:GQ 1/1:196,123,0:99 chr1 156534525 . A C 74.1 . DP=6;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:107,18,0:33 chr1 156534539 . G A 56 . DP=3;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:88,9,0:16 chr1 156536123 . T C 62.1 . DP=6;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:95,18,0:33 chr1 156536133 . A G 28.1 . DP=6;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:61,18,0:33 chr1 156536221 . G C 153 . DP=37;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,28,5;MQ=59;FQ=-126 GT:PL:GQ 1/1:186,99,0:99 chr1 156536251 . T C 213 . DP=52;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,19;MQ=60;FQ=-184 GT:PL:GQ 1/1:246,157,0:99 chr1 156536353 . A G 222 . DP=51;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,31;MQ=59;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 156536480 . T C 7.77 . DP=5;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:39,9,0:11 chr1 156539154 . T C 145 . DP=23;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,19,4;MQ=56;FQ=-96 GT:PL:GQ 1/1:178,69,0:99 chr1 156542215 . TCCC TCC 170 . INDEL;DP=38;VDB=0.0118;AF1=0.5;AC1=1;DP4=10,5,18,3;MQ=60;FQ=170;PV4=0.24,8e-08,1,1 GT:PL:GQ 0/1:208,0,208:99 chr1 156551848 . A G 159 . DP=30;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,8,20;MQ=57;FQ=-111 GT:PL:GQ 1/1:192,84,0:99 chr1 156553762 . A C 36.3 . DP=6;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:69,15,0:27 chr1 156556321 . G A 202 . DP=60;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,44,14;MQ=60;FQ=-202 GT:PL:GQ 1/1:235,175,0:99 chr1 156561651 . G C 123 . DP=13;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,10,2;MQ=56;FQ=-63 GT:PL:GQ 1/1:156,36,0:69 chr1 156562008 . G A 88 . DP=17;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,16;MQ=60;FQ=-75 GT:PL:GQ 1/1:121,48,0:93 chr1 156562143 . G A 8.44 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr1 156563375 . G A 171 . DP=49;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,34;MQ=60;FQ=-165 GT:PL:GQ 1/1:204,138,0:99 chr1 156563726 . A C 222 . DP=29;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,18,11;MQ=60;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 156563813 . G A 173 . DP=35;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,21;MQ=59;FQ=-126 GT:PL:GQ 1/1:206,99,0:99 chr1 156563852 . C T 186 . DP=27;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,5,22;MQ=59;FQ=-108 GT:PL:GQ 1/1:219,81,0:99 chr1 156563898 . T C 26 . DP=9;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:59,24,0:43 chr1 156564640 . G A 161 . DP=13;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:194,39,0:75 chr1 156564922 . C T 222 . DP=175;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,100,64;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 156565049 . AA AACA 214 . INDEL;DP=193;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,81,106;MQ=59;FQ=-290 GT:PL:GQ 1/1:255,255,0:99 chr1 156567496 . C T 45.3 . DP=5;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:78,15,0:27 chr1 156594656 . C A 68.1 . DP=7;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:101,21,0:39 chr1 156626340 . C G 88.5 . DP=4;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:121,12,0:21 chr1 156626920 . T C 172 . DP=62;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,22,32;MQ=60;FQ=-190 GT:PL:GQ 1/1:205,163,0:99 chr1 156639753 . G A 222 . DP=104;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,52,45;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 156640156 . G A 205 . DP=121;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,66,47;MQ=60;FQ=-282 GT:PL:GQ 1/1:238,255,0:99 chr1 156640678 . G A 178 . DP=35;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,10,20;MQ=59;FQ=-117 GT:PL:GQ 1/1:211,90,0:99 chr1 156641746 . C G 138 . DP=31;VDB=0.0373;AF1=0.5;AC1=1;DP4=2,9,6,11;MQ=60;FQ=141;PV4=0.42,1.9e-07,1,1 GT:PL:GQ 0/1:168,0,190:99 chr1 156646668 . A G 222 . DP=26;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,17,7;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 156705593 . G C 222 . DP=61;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,31,27;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 156706559 . A C,G 75 . DP=16;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,2,13;MQ=60;FQ=-57 GT:PL:GQ 1/1:166,88,58,113,0,98:57 chr1 156707524 . C T 138 . DP=51;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,18,9,17;MQ=60;FQ=141;PV4=0.76,2.9e-17,1,1 GT:PL:GQ 0/1:168,0,255:99 chr1 156707775 . T G 55 . DP=17;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,17,0;MQ=60;FQ=-78 GT:PL:GQ 1/1:88,51,0:98 chr1 156708244 . C T 225 . DP=168;VDB=0.0400;AF1=0.5;AC1=1;DP4=47,38,50,27;MQ=60;FQ=225;PV4=0.26,1,0.068,0.47 GT:PL:GQ 0/1:255,0,255:99 chr1 156713512 . C T 145 . DP=16;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,8,7;MQ=60;FQ=-72 GT:PL:GQ 1/1:178,45,0:87 chr1 156737969 . C T 78 . DP=45;VDB=0.0393;AF1=0.5;AC1=1;DP4=18,7,6,10;MQ=59;FQ=81;PV4=0.05,2.2e-15,1,1 GT:PL:GQ 0/1:108,0,255:99 chr1 156752048 . C G 173 . DP=49;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,27,20;MQ=60;FQ=-168 GT:PL:GQ 1/1:206,141,0:99 chr1 156760887 . C A 169 . DP=70;VDB=0.0399;AF1=0.5;AC1=1;DP4=28,4,17,16;MQ=60;FQ=172;PV4=0.0027,1e-11,1,0.3 GT:PL:GQ 0/1:199,0,255:99 chr1 156779118 . G A 180 . DP=85;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,24,12,32;MQ=59;FQ=183;PV4=0.63,4.1e-21,1,0.34 GT:PL:GQ 0/1:210,0,255:99 chr1 156784982 . T C 176 . DP=16;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,7;MQ=60;FQ=-75 GT:PL:GQ 1/1:209,48,0:93 chr1 156785617 . G A 222 . DP=99;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,56,37;MQ=58;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 156785762 . AG A 214 . INDEL;DP=93;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,32,59;MQ=56;FQ=-290 GT:PL:GQ 1/1:255,255,0:99 chr1 156785771 . A G 222 . DP=85;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,28,53;MQ=55;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr1 156785779 . G A 222 . DP=80;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,53;MQ=56;FQ=-259 GT:PL:GQ 1/1:255,232,0:99 chr1 156837847 . T C 73 . DP=82;VDB=0.0380;AF1=0.5;AC1=1;DP4=23,28,21,8;MQ=59;FQ=76;PV4=0.021,1.6e-21,0.28,1 GT:PL:GQ 0/1:103,0,255:99 chr1 156845492 . Agtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt AGTGTgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt,AGTgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 79.7 . INDEL;DP=41;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:255,150,135,204,0,192:27 chr1 156848995 . C T 219 . DP=38;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,8;MQ=59;FQ=-138 GT:PL:GQ 1/1:252,111,0:99 chr1 156875092 . G A 137 . DP=21;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,12,8;MQ=54;FQ=-87 GT:PL:GQ 1/1:170,60,0:99 chr1 156875097 . G A 222 . DP=26;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,13,11;MQ=54;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 156875107 . C A 222 . DP=29;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,16,12;MQ=55;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 156875377 . G C 15.9 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:47,6,0:10 chr1 156875985 . G A 163 . DP=34;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,10;MQ=59;FQ=-126 GT:PL:GQ 1/1:196,99,0:99 chr1 156877457 . T C 188 . DP=66;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,44;MQ=60;FQ=-214 GT:PL:GQ 1/1:221,187,0:99 chr1 156883493 . G A 160 . DP=24;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,1,11,1;MQ=60;FQ=155;PV4=1,1,1,1 GT:PL:GQ 0/1:190,0,183:99 chr1 156883546 . A G 116 . DP=55;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,2,18,5;MQ=59;FQ=119;PV4=0.22,2.8e-15,1,1 GT:PL:GQ 0/1:146,0,234:99 chr1 156884365 . T C 200 . DP=43;VDB=0.0066;AF1=0.5;AC1=1;DP4=21,1,17,2;MQ=60;FQ=154;PV4=0.59,1,1,0.27 GT:PL:GQ 0/1:230,0,181:99 chr1 156897591 . G T 225 . DP=49;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,7,14,15;MQ=60;FQ=219;PV4=0.38,1,1,0.21 GT:PL:GQ 0/1:255,0,247:99 chr1 156902259 . G A 43 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,2,9,0;MQ=60;FQ=46;PV4=0.49,2.3e-06,1,0.49 GT:PL:GQ 0/1:73,0,212:76 chr1 156907081 . T C 225 . DP=58;VDB=0.0393;AF1=0.5;AC1=1;DP4=17,19,10,10;MQ=60;FQ=225;PV4=1,0.26,1,0.26 GT:PL:GQ 0/1:255,0,255:99 chr1 156907115 . T C 96 . DP=61;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,22,11,11;MQ=60;FQ=99;PV4=0.41,9.1e-19,1,1 GT:PL:GQ 0/1:126,0,255:99 chr1 156914240 . Ccattcattcattcattcattcattcattcattca Ccattcattcattcattcattcattcattca 148 . INDEL;DP=22;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,4,0,5;MQ=58;FQ=151;PV4=0.2,4.5e-07,1,1 GT:PL:GQ 0/1:186,0,255:99 chr1 156918137 . C T 225 . DP=76;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,16,28,14;MQ=59;FQ=225;PV4=0.16,1,0.11,0.37 GT:PL:GQ 0/1:255,0,255:99 chr1 156925448 . G A 127 . DP=34;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,5,10,6;MQ=60;FQ=130;PV4=0.72,2.3e-12,1,1 GT:PL:GQ 0/1:157,0,255:99 chr1 156939175 . C T 119 . DP=19;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,3,4,3;MQ=60;FQ=122;PV4=0.63,0.22,1,1 GT:PL:GQ 0/1:149,0,222:99 chr1 156948956 . ccctcct ccct 86.5 . INDEL;DP=10;VDB=0.0081;AF1=0.5;AC1=1;DP4=7,0,3,0;MQ=60;FQ=89.5;PV4=1,2.4e-09,1,1 GT:PL:GQ 0/1:124,0,234:99 chr1 156954267 . C T 55 . DP=13;VDB=0.0359;AF1=0.5;AC1=1;DP4=2,3,0,7;MQ=58;FQ=58;PV4=0.15,0.0094,0.21,1 GT:PL:GQ 0/1:85,0,108:88 chr1 157062364 . G A 25 . DP=7;VDB=0.0011;AF1=0.5025;AC1=1;DP4=1,0,6,0;MQ=60;FQ=-7.78;PV4=1,0.0022,1,1 GT:PL:GQ 0/1:55,0,20:23 chr1 157062696 . G T 100 . DP=32;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,12,5,8;MQ=60;FQ=103;PV4=0.69,1.2e-10,1,0.35 GT:PL:GQ 0/1:130,0,255:99 chr1 157068533 . G A 94 . DP=20;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,1,8,2;MQ=59;FQ=97;PV4=1,6.2e-07,0.17,0.45 GT:PL:GQ 0/1:124,0,177:99 chr1 157095406 . C T 190 . DP=191;VDB=0.0365;AF1=0.5;AC1=1;DP4=63,32,52,40;MQ=60;FQ=193;PV4=0.18,2.8e-43,0.49,0.49 GT:PL:GQ 0/1:220,0,255:99 chr1 157485561 . G A 160 . DP=40;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,15;MQ=60;FQ=-144 GT:PL:GQ 1/1:193,117,0:99 chr1 157485720 . T C 100 . DP=7;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:133,15,0:27 chr1 157491173 . T A,G 146 . DP=17;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,2,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:179,45,0,157,11,154:87 chr1 157497263 . T C 157 . DP=39;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,32,4;MQ=60;FQ=-135 GT:PL:GQ 1/1:190,108,0:99 chr1 157508882 . C T 91.1 . DP=8;VDB=0.0003;AF1=0.5064;AC1=1;DP4=1,0,6,0;MQ=60;FQ=-11.3;PV4=1,0.4,1,1 GT:PL:GQ 0/1:121,0,16:19 chr1 157509025 . C T 205 . DP=49;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,22,24;MQ=59;FQ=-165 GT:PL:GQ 1/1:238,138,0:99 chr1 157514097 . A G 222 . DP=62;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,39,23;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 157550066 . T C 222 . DP=123;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,68,47;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 157557701 . G A 222 . DP=24;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,19,4;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr1 157559122 . C T 222 . DP=98;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,51,43;MQ=60;FQ=-281;PV4=1,0.011,0.46,1 GT:PL:GQ 1/1:255,254,0:99 chr1 157567751 . A G 201 . DP=44;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,13,30;MQ=59;FQ=-156 GT:PL:GQ 1/1:234,129,0:99 chr1 157771880 . C T 222 . DP=108;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,47,55;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 157802979 . C T 170 . DP=45;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,39,4;MQ=59;FQ=-156 GT:PL:GQ 1/1:203,129,0:99 chr1 157806006 . G A 222 . DP=40;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,9,31;MQ=60;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 157811392 . G A 169 . DP=46;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,30,11;MQ=59;FQ=-150 GT:PL:GQ 1/1:202,123,0:99 chr1 158056299 . C G 72 . DP=20;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,0,12,1;MQ=60;FQ=74.6;PV4=1,1.4e-08,1,1 GT:PL:GQ 0/1:102,0,112:99 chr1 158056549 . G C 11.3 . DP=18;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,9,0,7;MQ=60;FQ=14.2;PV4=1,4.8e-12,1,0.18 GT:PL:GQ 0/1:41,0,190:43 chr1 158057633 . C G 27 . DP=38;VDB=0.0216;AF1=0.5;AC1=1;DP4=8,17,5,7;MQ=60;FQ=30;PV4=0.72,5.7e-10,1,1 GT:PL:GQ 0/1:57,0,255:60 chr1 158146946 . T C 122 . DP=25;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,21,4;MQ=58;FQ=-102 GT:PL:GQ 1/1:155,75,0:99 chr1 158151218 . A G 101 . DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,6,0;MQ=56;FQ=-45 GT:PL:GQ 1/1:134,18,0:33 chr1 158153996 . T C 137 . DP=38;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,4,34;MQ=59;FQ=-141 GT:PL:GQ 1/1:170,114,0:99 chr1 158224825 . C T 23 . DP=7;VDB=0.0254;AF1=0.5;AC1=1;DP4=1,2,4,0;MQ=60;FQ=26;PV4=0.14,0.049,1,0.48 GT:PL:GQ 0/1:53,0,79:56 chr1 158224904 . C T 63 . DP=40;VDB=0.0140;AF1=0.5;AC1=1;DP4=15,6,17,1;MQ=60;FQ=66;PV4=0.098,6.7e-10,1,1 GT:PL:GQ 0/1:93,0,255:96 chr1 158225019 . C G 73 . DP=59;VDB=0.0393;AF1=0.5;AC1=1;DP4=10,18,11,16;MQ=60;FQ=76;PV4=0.78,4.3e-23,1,0.21 GT:PL:GQ 0/1:103,0,255:99 chr1 158263123 . C T 115 . DP=142;VDB=0.0392;AF1=0.5;AC1=1;DP4=24,50,12,50;MQ=59;FQ=118;PV4=0.12,5.5e-67,0.43,1 GT:PL:GQ 0/1:145,0,255:99 chr1 158297960 . C T 43 . DP=43;VDB=0.0298;AF1=0.5;AC1=1;DP4=19,5,16,3;MQ=60;FQ=46;PV4=1,1.8e-27,1,0.28 GT:PL:GQ 0/1:73,0,255:76 chr1 158300306 . G C 225 . DP=36;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,3,13,5;MQ=60;FQ=214;PV4=0.69,1,1,0.31 GT:PL:GQ 0/1:255,0,241:99 chr1 158324425 . A G 110 . DP=73;VDB=0.0345;AF1=0.5;AC1=1;DP4=24,20,12,13;MQ=60;FQ=113;PV4=0.63,1.3e-19,1,1 GT:PL:GQ 0/1:140,0,255:99 chr1 158368392 . C T 225 . DP=37;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,6,11,7;MQ=59;FQ=225;PV4=0.74,0.082,0.48,1 GT:PL:GQ 0/1:255,0,255:99 chr1 158435250 . C T 193 . DP=51;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,43,7;MQ=60;FQ=-178 GT:PL:GQ 1/1:226,151,0:99 chr1 158435278 . G A 222 . DP=75;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,51,19;MQ=59;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr1 158436299 . T C 213 . DP=81;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,8,69;MQ=60;FQ=-259 GT:PL:GQ 1/1:246,232,0:99 chr1 158436354 . atttttttt attttttt 5.84 . INDEL;DP=15;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-55.5 GT:PL:GQ 1/1:45,21,0:22 chr1 158450192 . C T 84 . DP=144;VDB=0.0359;AF1=0.5;AC1=1;DP4=55,26,29,22;MQ=60;FQ=87;PV4=0.26,2.4e-52,1,0.053 GT:PL:GQ 0/1:114,0,255:99 chr1 158450314 . A G 185 . DP=156;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,55,97;MQ=60;FQ=-282 GT:PL:GQ 1/1:218,255,0:99 chr1 158450382 . C T 121 . DP=95;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,33,13,29;MQ=60;FQ=124;PV4=0.83,2e-33,1,1 GT:PL:GQ 0/1:151,0,255:99 chr1 158507157 . A T 146 . DP=77;VDB=0.0322;AF1=1;AC1=2;DP4=1,0,54,18;MQ=59;FQ=-212;PV4=1,6e-05,0.41,1 GT:PL:GQ 1/1:179,185,0:99 chr1 158507160 . T G 75 . DP=77;VDB=0.0298;AF1=1;AC1=2;DP4=1,0,27,9;MQ=58;FQ=-101;PV4=1,1.1e-13,0.39,1 GT:PL:GQ 1/1:108,74,0:99 chr1 158507184 . A G 164 . DP=97;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,8,43,19;MQ=59;FQ=167;PV4=0.48,3.9e-37,0.44,1 GT:PL:GQ 0/1:194,0,255:99 chr1 158507222 . GAAAAAAAA GAAAAAAA 68.5 . INDEL;DP=115;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,60,46;MQ=59;FQ=-290;PV4=1,0.17,0.41,0.28 GT:PL:GQ 1/1:109,255,0:99 chr1 158507360 . G C 82 . DP=38;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,18,2,14;MQ=58;FQ=85;PV4=1,6.1e-15,1,1 GT:PL:GQ 0/1:112,0,255:99 chr1 158507398 . G T 87 . DP=14;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,14;MQ=58;FQ=-69 GT:PL:GQ 1/1:120,42,0:81 chr1 158517142 . C T 225 . DP=65;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,18,10,13;MQ=60;FQ=225;PV4=0.6,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 158517226 . C T 225 . DP=73;VDB=0.0399;AF1=0.5;AC1=1;DP4=23,14,16,16;MQ=59;FQ=225;PV4=0.34,0.023,0.063,1 GT:PL:GQ 0/1:255,0,255:99 chr1 158517353 . G A 163 . DP=88;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,22,19,23;MQ=59;FQ=166;PV4=0.67,2.2e-35,1,0.41 GT:PL:GQ 0/1:193,0,255:99 chr1 158532405 . T G 41 . DP=6;VDB=0.0003;AF1=0.5032;AC1=1;DP4=1,0,5,0;MQ=60;FQ=-8.63;PV4=1,0.0027,1,1 GT:PL:GQ 0/1:71,0,19:22 chr1 158533140 . A G 96 . DP=83;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,22,18,27;MQ=59;FQ=99;PV4=1,3.2e-33,0.44,1 GT:PL:GQ 0/1:126,0,255:99 chr1 158533224 . A G 134 . DP=67;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,15,12,23;MQ=59;FQ=137;PV4=0.44,1.2e-11,1,1 GT:PL:GQ 0/1:164,0,255:99 chr1 158549264 . G A 116 . DP=59;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,10,23,8;MQ=60;FQ=119;PV4=0.39,1.4e-24,1,0.4 GT:PL:GQ 0/1:146,0,255:99 chr1 158549420 . C T 225 . DP=77;VDB=0.0393;AF1=0.5;AC1=1;DP4=17,23,19,16;MQ=60;FQ=225;PV4=0.36,0.044,1,0.065 GT:PL:GQ 0/1:255,0,255:99 chr1 158549421 . G A 225 . DP=78;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,16,17,23;MQ=60;FQ=225;PV4=0.36,1,0.18,1 GT:PL:GQ 0/1:255,0,255:99 chr1 158549492 . C T 134 . DP=109;VDB=0.0392;AF1=0.5;AC1=1;DP4=35,14,45,12;MQ=60;FQ=137;PV4=0.5,2.4e-45,0.18,0.31 GT:PL:GQ 0/1:164,0,255:99 chr1 158549511 . A G 173 . DP=122;VDB=0.0392;AF1=0.5;AC1=1;DP4=39,17,43,17;MQ=59;FQ=176;PV4=0.84,5.7e-37,1,1 GT:PL:GQ 0/1:203,0,255:99 chr1 158577109 . A C 141 . DP=67;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,23,10,21;MQ=60;FQ=144;PV4=1,1.2e-28,1,1 GT:PL:GQ 0/1:171,0,255:99 chr1 158580921 . gcacacacacacacacacacacacacacacacacac gcacacacacacacacacacacacacacacacac,gcacacacacacacacacacacacacacacac 31.2 . INDEL;DP=3;VDB=0.0208;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:121,57,51,68,0,65:10 chr1 158582543 . G A 88 . DP=39;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,6,13,3;MQ=59;FQ=91;PV4=0.46,1.1e-07,1,1 GT:PL:GQ 0/1:118,0,255:99 chr1 158582552 . G A 142 . DP=45;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,9,14,7;MQ=59;FQ=145;PV4=0.76,1.6e-09,1,1 GT:PL:GQ 0/1:172,0,255:99 chr1 158582646 . T C 143 . DP=49;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,15,9,13;MQ=60;FQ=146;PV4=1,3.9e-19,0.14,1 GT:PL:GQ 0/1:173,0,255:99 chr1 158584091 . A G 90 . DP=26;VDB=0.0325;AF1=0.5;AC1=1;DP4=5,9,4,7;MQ=60;FQ=93;PV4=1,1.6e-08,1,0.41 GT:PL:GQ 0/1:120,0,255:99 chr1 158585230 . C T 73 . DP=19;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,6,2,8;MQ=60;FQ=76;PV4=0.63,1e-06,1,0.093 GT:PL:GQ 0/1:103,0,196:99 chr1 158587390 . C T 157 . DP=132;VDB=0.0345;AF1=0.5;AC1=1;DP4=44,21,42,24;MQ=59;FQ=160;PV4=0.71,5.6e-43,0.16,1 GT:PL:GQ 0/1:187,0,255:99 chr1 158587784 . T G 222 . DP=29;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,24,3;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 158607788 . T G 177 . DP=26;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,21,4;MQ=59;FQ=-102 GT:PL:GQ 1/1:210,75,0:99 chr1 158607935 . T G 127 . DP=58;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,18,12,16;MQ=60;FQ=130;PV4=1,5e-25,0.15,0.17 GT:PL:GQ 0/1:157,0,255:99 chr1 158612236 . A G 225 . DP=54;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,15,13,8;MQ=59;FQ=225;PV4=0.57,0.49,0.31,1 GT:PL:GQ 0/1:255,0,255:99 chr1 158612548 . T A 109 . DP=49;VDB=0.0216;AF1=0.5;AC1=1;DP4=15,5,23,5;MQ=59;FQ=112;PV4=0.72,2.2e-20,1,1 GT:PL:GQ 0/1:139,0,255:99 chr1 158618223 . C T 4.77 . DP=9;VDB=0.0060;AF1=0.4999;AC1=1;DP4=5,1,3,0;MQ=60;FQ=6.99;PV4=1,1.2e-05,1,0.02 GT:PL:GQ 0/1:33,0,155:33 chr1 158618455 . G A 31 . DP=18;VDB=0.0373;AF1=0.5;AC1=1;DP4=2,10,2,4;MQ=59;FQ=34;PV4=0.57,1.9e-06,0.082,1 GT:PL:GQ 0/1:61,0,219:64 chr1 158619728 . A C 222 . DP=74;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,42,28;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr1 158619822 . A C 71 . DP=56;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,18,6,27;MQ=60;FQ=74;PV4=1,2.2e-20,0.22,1 GT:PL:GQ 0/1:101,0,230:99 chr1 158626378 . C T 225 . DP=59;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,14,12,9;MQ=60;FQ=225;PV4=0.79,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 158631171 . A C 134 . DP=127;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,54,8,47;MQ=60;FQ=137;PV4=0.48,6.9e-35,1,1 GT:PL:GQ 0/1:164,0,255:99 chr1 158644105 . T A 107 . DP=50;VDB=0.0345;AF1=0.5;AC1=1;DP4=25,2,19,4;MQ=60;FQ=110;PV4=0.39,7.1e-26,1,0.22 GT:PL:GQ 0/1:137,0,247:99 chr1 158644294 . G T 169 . DP=65;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,14,12,19;MQ=59;FQ=172;PV4=0.31,3.9e-09,1,1 GT:PL:GQ 0/1:199,0,255:99 chr1 158647495 . A T 222 . DP=125;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,56,59;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 158647522 . A G 145 . DP=111;VDB=0.0399;AF1=0.5;AC1=1;DP4=20,46,16,25;MQ=59;FQ=148;PV4=0.4,4.3e-20,0.063,0.1 GT:PL:GQ 0/1:175,0,255:99 chr1 158647631 . T A 192 . DP=20;VDB=0.0081;AF1=1;AC1=2;DP4=0,1,1,17;MQ=58;FQ=-55;PV4=1,0.18,1,1 GT:PL:GQ 1/1:225,28,0:53 chr1 158647669 . T C 5.46 . DP=5;VDB=0.0153;AF1=0.4999;AC1=1;DP4=0,3,0,2;MQ=60;FQ=7.8;PV4=1,0.046,1,1 GT:PL:GQ 0/1:34,0,78:34 chr1 158654786 . C T 77.5 . DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:110,12,0:21 chr1 158654852 . A G 153 . DP=51;VDB=0.0164;AF1=0.5;AC1=1;DP4=15,1,27,8;MQ=60;FQ=144;PV4=0.24,2e-11,1,0.46 GT:PL:GQ 0/1:183,0,171:99 chr1 158655036 . G A 222 . DP=105;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,47,55;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 158655162 . C A 197 . DP=51;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,5,45;MQ=60;FQ=-178 GT:PL:GQ 1/1:230,151,0:99 chr1 158656281 . T C 143 . DP=11;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,7,4;MQ=58;FQ=-60 GT:PL:GQ 1/1:176,33,0:63 chr1 158656347 . CAGAGAGAGAGAGAGAGAGA CAGAGAGAGAGAGAGAGAGAGAGA 187 . INDEL;DP=17;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,4,5;MQ=57;FQ=-58.5 GT:PL:GQ 1/1:255,51,27:45 chr1 158670539 . C A 29 . DP=4;VDB=0.0153;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=30.3;PV4=1,0.25,1,0.44 GT:PL:GQ 0/1:59,0,62:60 chr1 158687896 . C T 146 . DP=67;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,19,18,12;MQ=60;FQ=149;PV4=0.46,9.6e-20,0.13,1 GT:PL:GQ 0/1:176,0,255:99 chr1 158724537 . T C 7.8 . DP=8;VDB=0.0011;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=10.4;PV4=1,0.013,1,1 GT:PL:GQ 0/1:37,0,68:39 chr1 158735595 . C T 222 . DP=55;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,27,24;MQ=58;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 158735691 . T C 222 . DP=58;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,27;MQ=59;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 158735740 . A G 164 . DP=55;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,24,30;MQ=59;FQ=-190 GT:PL:GQ 1/1:197,163,0:99 chr1 158735892 . A G 222 . DP=60;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,31,25;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 158736215 . G A 222 . DP=46;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,23,20;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 158736445 . C T 124 . DP=33;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,10,4,13;MQ=60;FQ=127;PV4=0.7,4.5e-08,1,1 GT:PL:GQ 0/1:154,0,232:99 chr1 158813819 . A G 204 . DP=52;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,16;MQ=60;FQ=-175 GT:PL:GQ 1/1:237,148,0:99 chr1 158817474 . A G 44 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:76,9,0:16 chr1 158906555 . A C 19.1 . DP=9;VDB=0.0014;AF1=0.5;AC1=1;DP4=5,0,4,0;MQ=60;FQ=22;PV4=1,0.00047,1,1 GT:PL:GQ 0/1:49,0,112:52 chr1 158909164 . C A 85 . DP=26;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,23,0;MQ=60;FQ=-96 GT:PL:GQ 1/1:118,69,0:99 chr1 158913525 . A G 222 . DP=19;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,16,2;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr1 158986477 . G C 222 . DP=96;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,49,41;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 158987941 . A G 139 . DP=17;VDB=0.0042;AF1=0.5;AC1=1;DP4=7,0,7,1;MQ=58;FQ=107;PV4=1,1,0.18,0.28 GT:PL:GQ 0/1:169,0,134:99 chr1 158990247 . A G 147 . DP=55;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,22,6,21;MQ=59;FQ=150;PV4=1,9.9e-13,0.078,1 GT:PL:GQ 0/1:177,0,255:99 chr1 159002301 . T C 225 . DP=50;VDB=0.0322;AF1=0.5;AC1=1;DP4=20,1,23,4;MQ=60;FQ=178;PV4=0.37,1,1,1 GT:PL:GQ 0/1:255,0,205:99 chr1 159002377 . C A 225 . DP=73;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,16,23,15;MQ=59;FQ=225;PV4=0.47,0.048,1,0.071 GT:PL:GQ 0/1:255,0,255:99 chr1 159002389 . T A 137 . DP=74;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,22,20,16;MQ=58;FQ=140;PV4=0.24,1.7e-28,0.31,0.43 GT:PL:GQ 0/1:167,0,255:99 chr1 159021364 . G A 39.1 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:72,18,0:33 chr1 159021445 . A G 225 . DP=70;VDB=0.0392;AF1=0.5;AC1=1;DP4=33,4,22,10;MQ=59;FQ=225;PV4=0.069,0.077,0.46,0.11 GT:PL:GQ 0/1:255,0,255:99 chr1 159024668 . A T 93 . DP=20;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,7,4,9;MQ=60;FQ=93.9;PV4=0.25,2.2e-11,1,1 GT:PL:GQ 0/1:123,0,125:99 chr1 159169641 . T C 177 . DP=18;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,4,14;MQ=60;FQ=-81 GT:PL:GQ 1/1:210,54,0:99 chr1 159174824 . G C 222 . DP=251;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,130,110;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 159402584 . GTT GTTT 214 . INDEL;DP=54;VDB=0.0066;AF1=1;AC1=2;DP4=0,1,4,46;MQ=60;FQ=-155;PV4=1,1,1,0.17 GT:PL:GQ 1/1:255,120,0:99 chr1 159409196 . T C 222 . DP=88;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,65,20;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 159409479 . T G 7.8 . DP=9;VDB=0.0050;AF1=0.5;AC1=1;DP4=5,1,3,0;MQ=60;FQ=10.4;PV4=1,0.001,1,0.31 GT:PL:GQ 0/1:37,0,144:39 chr1 159409533 . G A 169 . DP=50;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,43,6;MQ=60;FQ=-175 GT:PL:GQ 1/1:202,148,0:99 chr1 159409734 . G T 219 . DP=205;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,99,102;MQ=60;FQ=-282 GT:PL:GQ 1/1:252,255,0:99 chr1 159409857 . A G 225 . DP=120;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,53,14,40;MQ=60;FQ=225;PV4=0.38,0.49,0.06,1 GT:PL:GQ 0/1:255,0,255:99 chr1 159409884 . G A 225 . DP=87;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,29,7,42;MQ=60;FQ=225;PV4=0.4,0.29,1,0.33 GT:PL:GQ 0/1:255,0,255:99 chr1 159505297 . C T 222 . DP=114;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,62,49;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 159558258 . A G 222 . DP=52;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,15,33;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 159799599 . CAAA CAAAA 214 . INDEL;DP=43;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,35,7;MQ=59;FQ=-161 GT:PL:GQ 1/1:255,126,0:99 chr1 159799910 . G A 173 . DP=79;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,26,19,22;MQ=60;FQ=176;PV4=0.25,3.1e-28,1,0.4 GT:PL:GQ 0/1:203,0,255:99 chr1 159824967 . G C 222 . DP=32;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,21,10;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 159825061 . G C 176 . DP=50;VDB=0.0384;AF1=0.5;AC1=1;DP4=12,19,8,6;MQ=60;FQ=179;PV4=0.34,1,1,1 GT:PL:GQ 0/1:206,0,255:99 chr1 159825916 . C T 201 . DP=31;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,9,5,11;MQ=60;FQ=193;PV4=1,0.49,1,0.39 GT:PL:GQ 0/1:231,0,220:99 chr1 159828128 . A G 135 . DP=32;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,6,24;MQ=60;FQ=-117 GT:PL:GQ 1/1:168,90,0:99 chr1 159832425 . G A 27 . DP=18;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,9,0,8;MQ=59;FQ=30;PV4=1,6.2e-09,1,1 GT:PL:GQ 0/1:57,0,181:60 chr1 159842691 . C G 73 . DP=22;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,3,7,5;MQ=60;FQ=76;PV4=0.67,5.1e-12,1,1 GT:PL:GQ 0/1:103,0,206:99 chr1 159850401 . C G 160 . DP=63;VDB=0.0345;AF1=0.5;AC1=1;DP4=22,8,15,15;MQ=60;FQ=163;PV4=0.11,7.3e-17,1,1 GT:PL:GQ 0/1:190,0,255:99 chr1 159854392 . C A 40 . DP=8;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,2,2,4;MQ=60;FQ=19.1;PV4=1,0.00026,1,1 GT:PL:GQ 0/1:70,0,46:49 chr1 159860259 . G A 96 . DP=24;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,3,10,2;MQ=60;FQ=99;PV4=1,1.5e-07,1,1 GT:PL:GQ 0/1:126,0,218:99 chr1 159888701 . C T 161 . DP=86;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,26,16,22;MQ=59;FQ=164;PV4=0.83,3e-17,0.41,0.4 GT:PL:GQ 0/1:191,0,255:99 chr1 159889686 . G A 196 . DP=28;VDB=0.0393;AF1=0.5;AC1=1;DP4=5,6,3,12;MQ=59;FQ=185;PV4=0.22,0.14,0.2,1 GT:PL:GQ 0/1:226,0,212:99 chr1 159889895 . T G 134 . DP=17;VDB=0.0216;AF1=0.5;AC1=1;DP4=7,1,7,2;MQ=60;FQ=128;PV4=1,0.12,1,0.14 GT:PL:GQ 0/1:164,0,155:99 chr1 159890163 . T A 73 . DP=6;VDB=0.0126;AF1=0.5;AC1=1;DP4=0,2,2,2;MQ=60;FQ=24;PV4=0.47,0.32,1,1 GT:PL:GQ 0/1:103,0,51:54 chr1 159897126 . C T 25 . DP=11;VDB=0.0006;AF1=0.5;AC1=1;DP4=6,0,5,0;MQ=60;FQ=28;PV4=1,8.5e-09,1,0.1 GT:PL:GQ 0/1:55,0,133:58 chr1 159897681 . TAAAAAAAAAAAAAAA TAAAAAAAAAAAAA,TAAAAAAAAAAAAAA 5.19 . INDEL;DP=32;VDB=0.0384;AF1=1;AC1=2;DP4=0,1,4,13;MQ=59;FQ=-51.5;PV4=1,1,0.41,1 GT:PL:GQ 1/1:50,23,6,57,0,37:17 chr1 159898100 . A G 83 . DP=20;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,6,2,3;MQ=60;FQ=86;PV4=0.63,1,1,1 GT:PL:GQ 0/1:113,0,253:99 chr1 159902526 . T C 204 . DP=23;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,5,3,11;MQ=60;FQ=149;PV4=0.62,0.12,1,1 GT:PL:GQ 0/1:234,0,176:99 chr1 159906156 . A G 151 . DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,19,13,11;MQ=59;FQ=154;PV4=0.6,1e-05,0.39,0.32 GT:PL:GQ 0/1:181,0,255:99 chr1 159907362 . A G 27 . DP=10;VDB=0.0011;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=30;PV4=1,0.00011,1,1 GT:PL:GQ 0/1:57,0,80:60 chr1 159907367 . T C 59 . DP=12;VDB=0.0011;AF1=0.5;AC1=1;DP4=3,1,8,0;MQ=60;FQ=61.8;PV4=0.33,6.4e-06,1,0.28 GT:PL:GQ 0/1:89,0,103:92 chr1 159913053 . C T 79 . DP=57;VDB=0.0190;AF1=0.5;AC1=1;DP4=21,6,26,4;MQ=60;FQ=82;PV4=0.49,3.3e-22,1,1 GT:PL:GQ 0/1:109,0,255:99 chr1 159922369 . C T 44 . DP=18;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,9,0,9;MQ=59;FQ=47;PV4=1,1.5e-10,0.17,1 GT:PL:GQ 0/1:74,0,152:77 chr1 159923111 . T G 203 . DP=31;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,6,13,3;MQ=59;FQ=206;PV4=0.24,1,0.18,1 GT:PL:GQ 0/1:233,0,244:99 chr1 160012406 . A G 107 . DP=19;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,1,16;MQ=60;FQ=-78 GT:PL:GQ 1/1:140,51,0:99 chr1 160085868 . A C 41.3 . DP=6;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:74,15,0:27 chr1 160090674 . T C 173 . DP=25;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,20,4;MQ=57;FQ=-99 GT:PL:GQ 1/1:206,72,0:99 chr1 160090681 . CCCTTCCT CCCT 189 . INDEL;DP=30;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,4,10,0;MQ=58;FQ=192;PV4=0.27,0.0027,0.022,1 GT:PL:GQ 0/1:227,0,255:99 chr1 160093222 . C T 215 . DP=48;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,21,26;MQ=60;FQ=-168 GT:PL:GQ 1/1:248,141,0:99 chr1 160093911 . T C 115 . DP=15;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,11;MQ=60;FQ=-72 GT:PL:GQ 1/1:148,45,0:87 chr1 160093927 . T A 17.1 . DP=9;VDB=0.0131;AF1=0.5;AC1=1;DP4=1,6,1,1;MQ=60;FQ=20.1;PV4=0.42,0.46,1,1 GT:PL:GQ 0/1:47,0,165:50 chr1 160093942 . G A 16.1 . DP=6;VDB=0.0095;AF1=0.5;AC1=1;DP4=1,1,1,3;MQ=60;FQ=18.8;PV4=1,0.001,1,1 GT:PL:GQ 0/1:46,0,58:49 chr1 160097666 . G A 88 . DP=33;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,11,3,13;MQ=60;FQ=91;PV4=0.69,1.2e-14,1,1 GT:PL:GQ 0/1:118,0,255:99 chr1 160098543 . G A 154 . DP=72;VDB=0.0190;AF1=0.5;AC1=1;DP4=21,18,22,10;MQ=56;FQ=157;PV4=0.23,1.5e-26,1.9e-06,1 GT:PL:GQ 0/1:184,0,255:99 chr1 160124875 . G A 164 . DP=15;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,9,5;MQ=60;FQ=-69 GT:PL:GQ 1/1:197,42,0:81 chr1 160128671 . G A 53 . DP=14;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,2,8,0;MQ=60;FQ=56;PV4=0.13,8.3e-08,1,1 GT:PL:GQ 0/1:83,0,130:86 chr1 160128994 . C T 58.1 . DP=7;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:91,18,0:33 chr1 160134205 . C T,A 172 . DP=26;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,5,18;MQ=60;FQ=-93 GT:PL:GQ 1/1:205,66,0,202,50,199:99 chr1 160137300 . A C 74 . DP=25;VDB=0.0118;AF1=1;AC1=2;DP4=0,1,0,22;MQ=59;FQ=-67;PV4=1,1.7e-07,1,0.29 GT:PL:GQ 1/1:107,40,0:77 chr1 160141196 . C T 195 . DP=89;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,53,32;MQ=60;FQ=-282 GT:PL:GQ 1/1:228,255,0:99 chr1 160141268 . T C 222 . DP=86;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,34,50;MQ=60;FQ=-280 GT:PL:GQ 1/1:255,253,0:99 chr1 160141286 . C G 207 . DP=87;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,30,53;MQ=59;FQ=-277 GT:PL:GQ 1/1:240,250,0:99 chr1 160141636 . C T 119 . DP=16;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,13;MQ=60;FQ=-72 GT:PL:GQ 1/1:152,45,0:87 chr1 160146173 . T C 125 . DP=38;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,3,20,4;MQ=60;FQ=128;PV4=0.68,2.3e-17,1,1 GT:PL:GQ 0/1:155,0,219:99 chr1 160147502 . T G 94 . DP=31;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,12,4,10;MQ=59;FQ=97;PV4=0.68,2.1e-09,1,1 GT:PL:GQ 0/1:124,0,233:99 chr1 160147510 . G A 71 . DP=30;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,12,4,11;MQ=59;FQ=74;PV4=0.65,6e-11,1,0.38 GT:PL:GQ 0/1:101,0,215:99 chr1 160151421 . G C 101 . DP=31;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,1,14,4;MQ=59;FQ=104;PV4=0.62,1.7e-12,0.21,0.034 GT:PL:GQ 0/1:131,0,182:99 chr1 160151450 . T C 142 . DP=44;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,5,18,8;MQ=59;FQ=145;PV4=1,1.3e-09,0.21,1 GT:PL:GQ 0/1:172,0,236:99 chr1 160151624 . GCCC GCCCC 177 . INDEL;DP=82;VDB=0.0392;AF1=0.5;AC1=1;DP4=35,14,18,8;MQ=60;FQ=180;PV4=1,1,1,1 GT:PL:GQ 0/1:215,0,255:99 chr1 160156027 . C G 220 . DP=34;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,5,17,4;MQ=59;FQ=201;PV4=0.23,0.011,1,1 GT:PL:GQ 0/1:250,0,228:99 chr1 160163446 . C T 58 . DP=3;VDB=0.0050;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:90,9,0:16 chr1 160163509 . C T 127 . DP=23;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,18,4;MQ=60;FQ=-93 GT:PL:GQ 1/1:160,66,0:99 chr1 160164714 . C G 6.98 . DP=6;VDB=0.0102;AF1=0.4999;AC1=1;DP4=3,1,1,1;MQ=60;FQ=9.53;PV4=1,0.0075,1,0.35 GT:PL:GQ 0/1:36,0,114:37 chr1 160168368 . G A 152 . DP=23;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,16,6;MQ=60;FQ=-93 GT:PL:GQ 1/1:185,66,0:99 chr1 160168426 . G C 134 . DP=29;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,5,8,7;MQ=60;FQ=137;PV4=0.72,1.4e-09,1,1 GT:PL:GQ 0/1:164,0,248:99 chr1 160169473 . T C 13 . DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr1 160178356 . A G 169 . DP=25;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,18,6;MQ=59;FQ=-99 GT:PL:GQ 1/1:202,72,0:99 chr1 160265668 . G C 225 . DP=69;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,18,13,15;MQ=60;FQ=225;PV4=0.62,0.37,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 160275434 . A G 160 . DP=72;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,23,46;MQ=60;FQ=-235 GT:PL:GQ 1/1:193,208,0:99 chr1 160318984 . T C 106 . DP=21;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,8,3,9;MQ=60;FQ=109;PV4=0.6,3.2e-09,1,0.079 GT:PL:GQ 0/1:136,0,170:99 chr1 160393905 . A G 43 . DP=45;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,9,10,4;MQ=60;FQ=46;PV4=1,1e-15,1,1 GT:PL:GQ 0/1:73,0,255:76 chr1 160394173 . A G 210 . DP=48;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,20,3,17;MQ=60;FQ=213;PV4=0.72,1,1,1 GT:PL:GQ 0/1:240,0,255:99 chr1 160394937 . A C 121 . DP=43;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,11,7,13;MQ=60;FQ=124;PV4=0.37,2.6e-10,1,1 GT:PL:GQ 0/1:151,0,255:99 chr1 160395003 . G A 123 . DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,14,9,10;MQ=60;FQ=126;PV4=1,3.4e-18,1,0.5 GT:PL:GQ 0/1:153,0,255:99 chr1 160458782 . A G 222 . DP=86;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,62,21;MQ=60;FQ=-277 GT:PL:GQ 1/1:255,250,0:99 chr1 160580015 . A G 178 . DP=33;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,27,5;MQ=60;FQ=-123 GT:PL:GQ 1/1:211,96,0:99 chr1 160580549 . G T 176 . DP=83;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,13,30,17;MQ=60;FQ=179;PV4=1,2.1e-30,0.2,0.22 GT:PL:GQ 0/1:206,0,255:99 chr1 160582248 . C G 142 . DP=25;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,6,7,2;MQ=60;FQ=145;PV4=0.4,0.3,1,0.23 GT:PL:GQ 0/1:172,0,255:99 chr1 160585554 . C G 222 . DP=85;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,53,32;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 160585706 . C T 61 . DP=27;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,26;MQ=60;FQ=-105 GT:PL:GQ 1/1:94,78,0:99 chr1 160604473 . G A 121 . DP=66;VDB=0.0190;AF1=0.5;AC1=1;DP4=25,17,15,8;MQ=60;FQ=124;PV4=0.79,2.1e-18,1,1 GT:PL:GQ 0/1:151,0,255:99 chr1 160650913 . A G 56.1 . DP=7;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,6,0;MQ=56;FQ=-45 GT:PL:GQ 1/1:89,18,0:33 chr1 160650938 . C T 31 . DP=10;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,1,6,0;MQ=58;FQ=34;PV4=0.4,9.7e-05,0.22,1 GT:PL:GQ 0/1:61,0,94:64 chr1 160654758 . C G 225 . DP=105;VDB=0.0380;AF1=0.5;AC1=1;DP4=33,22,27,21;MQ=60;FQ=225;PV4=0.84,0.48,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr1 160654786 . G A 225 . DP=101;VDB=0.0380;AF1=0.5;AC1=1;DP4=33,20,22,24;MQ=60;FQ=225;PV4=0.16,0.39,0.14,0.24 GT:PL:GQ 0/1:255,0,255:99 chr1 160722064 . A G 222 . DP=27;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,20;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 160786670 . A G 189 . DP=39;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,19,3,12;MQ=60;FQ=192;PV4=1,0.15,1,0.47 GT:PL:GQ 0/1:219,0,255:99 chr1 160789196 . A C 222 . DP=44;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,4,39;MQ=59;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 160803802 . A G 81 . DP=20;VDB=0.0053;AF1=0.5;AC1=1;DP4=11,3,6,0;MQ=59;FQ=84;PV4=0.52,1,1,1 GT:PL:GQ 0/1:111,0,231:99 chr1 160849060 . G A 105 . DP=11;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:138,33,0:63 chr1 160849082 . A G 210 . DP=28;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,18,9;MQ=60;FQ=-108 GT:PL:GQ 1/1:243,81,0:99 chr1 160850280 . G A 63 . DP=10;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:96,27,0:51 chr1 160850936 . T C 181 . DP=140;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,94,42;MQ=60;FQ=-282 GT:PL:GQ 1/1:214,255,0:99 chr1 160851826 . A T 222 . DP=29;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,13,15;MQ=58;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 160851894 . G A 222 . DP=42;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,29,12;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 160852022 . C T 203 . DP=64;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,44;MQ=60;FQ=-220 GT:PL:GQ 1/1:236,193,0:99 chr1 160852046 . T C 178 . DP=50;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,42;MQ=60;FQ=-178 GT:PL:GQ 1/1:211,151,0:99 chr1 160854526 . G A 35 . DP=8;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:68,24,0:45 chr1 160917902 . T C 55 . DP=14;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,3,0,10;MQ=60;FQ=32;PV4=1,9.8e-06,1,1 GT:PL:GQ 0/1:85,0,59:62 chr1 160920809 . A G 166 . DP=27;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,5,7,10;MQ=60;FQ=168;PV4=0.71,2e-08,1,1 GT:PL:GQ 0/1:196,0,202:99 chr1 160920813 . A G 214 . DP=30;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,16;MQ=60;FQ=-108 GT:PL:GQ 1/1:247,81,0:99 chr1 160920966 . C T 214 . DP=32;VDB=0.0190;AF1=0.5;AC1=1;DP4=11,6,10,4;MQ=60;FQ=217;PV4=1,0.46,1,1 GT:PL:GQ 0/1:244,0,255:99 chr1 160969585 . C T 222 . DP=108;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,58,46;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 160971146 . A G 213 . DP=24;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,13,11;MQ=60;FQ=-99 GT:PL:GQ 1/1:246,72,0:99 chr1 160990878 . C T 17.1 . DP=64;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:49,9,0:15 chr1 161008360 . T A 225 . DP=49;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,13,12,16;MQ=60;FQ=219;PV4=0.36,0.19,1,1 GT:PL:GQ 0/1:255,0,247:99 chr1 161010774 . A G 48.1 . DP=6;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:81,18,0:33 chr1 161010791 . C T 36 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:68,9,0:16 chr1 161011716 . G C 125 . DP=13;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,3,10;MQ=60;FQ=-66 GT:PL:GQ 1/1:158,39,0:75 chr1 161013121 . C T 150 . DP=32;VDB=0.0322;AF1=1;AC1=2;DP4=0,1,8,23;MQ=60;FQ=-89;PV4=1,0.0002,1,1 GT:PL:GQ 1/1:183,62,0:99 chr1 161017556 . C T 222 . DP=45;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,29,15;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 161019040 . G C 222 . DP=138;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,64,68;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 161022380 . G A 217 . DP=53;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,44;MQ=59;FQ=-187 GT:PL:GQ 1/1:250,160,0:99 chr1 161049358 . G A 187 . DP=24;VDB=0.0343;AF1=0.5;AC1=1;DP4=5,5,9,5;MQ=60;FQ=163;PV4=0.68,0.11,1,0.011 GT:PL:GQ 0/1:217,0,190:99 chr1 161049383 . G T 209 . DP=26;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,6,9,5;MQ=59;FQ=179;PV4=0.43,0.43,1,1 GT:PL:GQ 0/1:239,0,206:99 chr1 161070042 . C T 164 . DP=81;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,23,16,30;MQ=59;FQ=167;PV4=1,3.5e-22,1,0.47 GT:PL:GQ 0/1:194,0,255:99 chr1 161088695 . A C 142 . DP=33;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,9,7,11;MQ=59;FQ=145;PV4=1,1.2e-07,0.18,0.47 GT:PL:GQ 0/1:172,0,255:99 chr1 161089450 . CTA CTAAACTTA 130 . INDEL;DP=26;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,8,2,8;MQ=49;FQ=133;PV4=0.41,1,7.1e-07,1 GT:PL:GQ 0/1:168,0,255:99 chr1 161093862 . G A 173 . DP=34;VDB=0.0216;AF1=0.5;AC1=1;DP4=16,4,9,3;MQ=60;FQ=176;PV4=1,1,1,1 GT:PL:GQ 0/1:203,0,255:99 chr1 161126975 . C G 151 . DP=58;VDB=0.0271;AF1=0.5;AC1=1;DP4=23,6,22,7;MQ=60;FQ=154;PV4=1,1.5e-19,1,1 GT:PL:GQ 0/1:181,0,255:99 chr1 161132777 . G A 113 . DP=47;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,11,12,5;MQ=59;FQ=116;PV4=0.52,2.1e-06,0.11,0.19 GT:PL:GQ 0/1:143,0,255:99 chr1 161136843 . C G 79 . DP=54;VDB=0.0398;AF1=0.5;AC1=1;DP4=20,13,12,6;MQ=60;FQ=82;PV4=0.77,7.7e-17,1,1 GT:PL:GQ 0/1:109,0,255:99 chr1 161138135 . C T 83 . DP=16;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,2,8,2;MQ=60;FQ=86;PV4=0.6,1.5e-05,1,1 GT:PL:GQ 0/1:113,0,135:99 chr1 161163037 . T C 163 . DP=18;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,6;MQ=60;FQ=-81 GT:PL:GQ 1/1:196,54,0:99 chr1 161163633 . C T 222 . DP=51;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,20,28;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 161168004 . C T 93 . DP=53;VDB=0.0393;AF1=0.5;AC1=1;DP4=19,17,5,11;MQ=59;FQ=96;PV4=0.23,1.6e-11,0.28,0.48 GT:PL:GQ 0/1:123,0,255:99 chr1 161168189 . C T 223 . DP=61;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,11,16,10;MQ=59;FQ=224;PV4=1,0.0045,1,0.47 GT:PL:GQ 0/1:253,0,255:99 chr1 161176137 . A G 201 . DP=12;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:234,36,0:69 chr1 161182208 . C G 142 . DP=59;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,14,16,20;MQ=60;FQ=145;PV4=0.58,3.6e-17,1,0.12 GT:PL:GQ 0/1:172,0,255:99 chr1 161184059 . Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt CTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 57.2 . INDEL;DP=10;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:96,6,0:10 chr1 161185058 . G T 90 . DP=21;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,3,4,5;MQ=60;FQ=93;PV4=0.2,4.1e-05,1,0.47 GT:PL:GQ 0/1:120,0,206:99 chr1 161191296 . T C 65.8 . DP=10;VDB=0.0033;AF1=0.6243;AC1=1;DP4=1,0,8,1;MQ=58;FQ=-23;PV4=1,0.0009,0.38,0.44 GT:PL:GQ 0/1:95,0,4:7 chr1 161192845 . Ccacacacacacacacacacacacacacacacacacacac Ccacacacacacacacacacacacacacacacacac,Ccacacacacacacacacacacacac,Ccacacacacacacacacacacacacac 155 . INDEL;DP=35;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,9;MQ=55;FQ=-52.5 GT:PL:GQ 1/1:255,78,60,208,0,202,255,53,187,252:33 chr1 161196166 . A C 17.1 . DP=4;VDB=0.0183;AF1=0.5008;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-4.13;PV4=1,0.0012,1,1 GT:PL:GQ 0/1:47,0,25:28 chr1 161202556 . T C 97 . DP=41;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,13,9,5;MQ=59;FQ=100;PV4=0.52,9.6e-16,0.084,0.22 GT:PL:GQ 0/1:127,0,255:99 chr1 161205608 . G C 60 . DP=17;VDB=0.0081;AF1=0.5;AC1=1;DP4=8,0,7,1;MQ=60;FQ=63;PV4=1,3e-10,1,1 GT:PL:GQ 0/1:90,0,151:93 chr1 161253657 . C T 119 . DP=7;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,2,2,3;MQ=60;FQ=19.1;PV4=1,1,1,1 GT:PL:GQ 0/1:149,0,46:49 chr1 161254302 . C T 68 . DP=13;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,3,1,9;MQ=60;FQ=39;PV4=1,1.3e-06,1,1 GT:PL:GQ 0/1:98,0,66:69 chr1 161276376 . G A 222 . DP=27;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,3,22;MQ=59;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 161276434 . A G 197 . DP=10;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,6,3;MQ=60;FQ=-54 GT:PL:GQ 1/1:230,27,0:51 chr1 161309239 . C T 105 . DP=52;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,8,13,5;MQ=58;FQ=108;PV4=0.75,1.2e-12,1,1 GT:PL:GQ 0/1:135,0,255:99 chr1 161475750 . G A 225 . DP=46;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,8,10,13;MQ=60;FQ=225;PV4=0.24,0.41,1,0.4 GT:PL:GQ 0/1:255,0,255:99 chr1 161479599 . G A 157 . DP=21;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,1,7,2;MQ=60;FQ=158;PV4=0.57,1,1,1 GT:PL:GQ 0/1:187,0,189:99 chr1 161479745 . A G 225 . DP=99;VDB=0.0365;AF1=0.5;AC1=1;DP4=32,22,29,16;MQ=59;FQ=225;PV4=0.68,1,1,0.41 GT:PL:GQ 0/1:255,0,255:99 chr1 161480649 . A G 180 . DP=101;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,25,25,34;MQ=60;FQ=183;PV4=0.68,2.6e-29,1,0.2 GT:PL:GQ 0/1:210,0,255:99 chr1 161495477 . A T 222 . DP=59;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,37,21;MQ=45;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 161495885 . T C 128 . DP=67;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,34,30;MQ=58;FQ=-220 GT:PL:GQ 1/1:161,193,0:99 chr1 161514542 . A C 70 . DP=27;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,5,10,5;MQ=46;FQ=73;PV4=0.71,5.7e-09,0.0071,0.4 GT:PL:GQ 0/1:100,0,203:99 chr1 161514759 . C A 87.2 . DP=16;VDB=0.0398;AF1=1;AC1=2;DP4=0,1,2,12;MQ=49;FQ=-43;PV4=1,8.4e-06,1,1 GT:PL:GQ 1/1:120,16,0:29 chr1 161518333 . A T 225 . DP=115;VDB=0.0380;AF1=0.5;AC1=1;DP4=33,36,23,21;MQ=47;FQ=225;PV4=0.7,0.0038,1,0.14 GT:PL:GQ 0/1:255,0,255:99 chr1 161559327 . A G 222 . DP=19;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,14,4;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr1 161561236 . C T 99 . DP=10;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,9;MQ=25;FQ=-57 GT:PL:GQ 1/1:132,30,0:57 chr1 161561287 . A G 48.5 . DP=4;VDB=0.0249;AF1=1;AC1=2;DP4=0,0,0,4;MQ=28;FQ=-39 GT:PL:GQ 1/1:81,12,0:21 chr1 161563281 . AGG AGGG 173 . INDEL;DP=18;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,3,5,5;MQ=54;FQ=108;PV4=0.66,1,0.34,0.23 GT:PL:GQ 0/1:211,0,143:99 chr1 161565324 . C T 85 . DP=50;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,38,3;MQ=31;FQ=-150 GT:PL:GQ 1/1:118,123,0:99 chr1 161565381 . A G 171 . DP=111;VDB=0.0118;AF1=0.5;AC1=1;DP4=25,28,39,18;MQ=45;FQ=174;PV4=0.033,8.6e-38,0.16,1 GT:PL:GQ 0/1:201,0,255:99 chr1 161576227 . C G 31 . DP=26;VDB=0.0398;AF1=0.5;AC1=1;DP4=10,0,13,0;MQ=20;FQ=31;PV4=1,1.8e-08,0.054,1 GT:PL:GQ 0/1:61,0,61:61 chr1 161577204 . G T 45 . DP=59;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,25,1,27;MQ=31;FQ=48;PV4=0.2,1.7e-21,1,1 GT:PL:GQ 0/1:75,0,211:78 chr1 161577657 . G A 112 . DP=63;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,13,18,16;MQ=45;FQ=115;PV4=0.79,6.3e-22,2.9e-10,0.15 GT:PL:GQ 0/1:142,0,255:99 chr1 161577669 . G A 159 . DP=60;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,14,18,15;MQ=44;FQ=162;PV4=0.8,2.2e-19,4.7e-10,1 GT:PL:GQ 0/1:189,0,255:99 chr1 161594226 . C T 31.5 . DP=4;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,3,1;MQ=53;FQ=-39 GT:PL:GQ 1/1:64,12,0:21 chr1 161594246 . G T 130 . DP=16;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,12,3;MQ=48;FQ=-72 GT:PL:GQ 1/1:163,45,0:87 chr1 161596283 . G A 69 . DP=10;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,9;MQ=34;FQ=-54 GT:PL:GQ 1/1:102,27,0:51 chr1 161599693 . T C 209 . DP=52;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,15;MQ=28;FQ=-171 GT:PL:GQ 1/1:242,144,0:99 chr1 161601133 . T C 38 . DP=9;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:71,24,0:45 chr1 161641384 . G A 99 . DP=34;VDB=0.0099;AF1=0.5;AC1=1;DP4=7,14,2,11;MQ=27;FQ=102;PV4=0.43,1,1,0.38 GT:PL:GQ 0/1:129,0,215:99 chr1 161645211 . G C 13 . DP=2;VDB=0.0169;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr1 161676904 . T C 35.8 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:67,6,0:10 chr1 161676970 . A G 66.3 . DP=6;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,4,1;MQ=55;FQ=-42 GT:PL:GQ 1/1:99,15,0:27 chr1 161680258 . G A 222 . DP=54;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,27;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr1 161681918 . G C 225 . DP=29;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,4,7,13;MQ=60;FQ=120;PV4=1,0.083,1,0.063 GT:PL:GQ 0/1:255,0,147:99 chr1 161682975 . G T 225 . DP=64;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,19,13,16;MQ=60;FQ=225;PV4=0.79,0.21,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 161683136 . G A 157 . DP=65;VDB=0.0345;AF1=0.5;AC1=1;DP4=22,13,19,10;MQ=60;FQ=160;PV4=1,1.3e-22,1,0.45 GT:PL:GQ 0/1:187,0,255:99 chr1 161695639 . G T 222 . DP=22;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,17,4;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 161696088 . T C 220 . DP=118;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,47,63;MQ=60;FQ=-282 GT:PL:GQ 1/1:253,255,0:99 chr1 161696782 . G C 24 . DP=10;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,4,1,4;MQ=58;FQ=27;PV4=1,0.00093,1,1 GT:PL:GQ 0/1:54,0,112:57 chr1 161697319 . G A 100 . DP=40;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,9,11,4;MQ=59;FQ=103;PV4=0.73,6.5e-06,1,1 GT:PL:GQ 0/1:130,0,255:99 chr1 161721351 . A G 50 . DP=10;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:83,24,0:45 chr1 161721707 . C T 225 . DP=14;VDB=0.0380;AF1=0.5001;AC1=1;DP4=1,1,7,5;MQ=60;FQ=7.8;PV4=1,0.35,1,0.32 GT:PL:GQ 0/1:255,0,34:37 chr1 161722779 . caaaaaaaaaa cAAAaaaaaaaaaa,cAAaaaaaaaaaa,cAaaaaaaaaaa 24.4 . INDEL;DP=6;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:85,30,21,65,0,59,84,23,60,81:15 chr1 161736035 . A G 17.1 . DP=14;VDB=0.0324;AF1=0.5;AC1=1;DP4=8,1,3,1;MQ=60;FQ=20.1;PV4=1,3.7e-05,1,0.37 GT:PL:GQ 0/1:47,0,184:50 chr1 161928327 . A G 168 . DP=71;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,27,14,14;MQ=60;FQ=171;PV4=0.21,2.8e-19,1,1 GT:PL:GQ 0/1:198,0,255:99 chr1 161967681 . A G 225 . DP=61;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,14,11,19;MQ=60;FQ=225;PV4=0.3,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 161976234 . A G 222 . DP=83;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,31,44;MQ=59;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr1 161976272 . GAAAAAAAAAA GAAAAAAAAAAA,GAAAAAAAAAAAA 43.5 . INDEL;DP=72;VDB=0.0399;AF1=1;AC1=2;DP4=1,2,20,39;MQ=60;FQ=-159;PV4=1,1,0.41,1 GT:PL:GQ 1/1:84,124,0,65,74,58:99 chr1 162257033 . C G 88 . DP=22;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,5,5,4;MQ=60;FQ=91;PV4=1,3.7e-08,1,1 GT:PL:GQ 0/1:118,0,247:99 chr1 162302635 . T C 53 . DP=22;VDB=0.0014;AF1=0.5;AC1=1;DP4=8,0,13,0;MQ=59;FQ=56;PV4=1,1e-10,1,1 GT:PL:GQ 0/1:83,0,130:86 chr1 162302689 . C T 84 . DP=94;VDB=0.0345;AF1=0.5;AC1=1;DP4=31,9,45,7;MQ=59;FQ=87;PV4=0.28,2.1e-42,1,1 GT:PL:GQ 0/1:114,0,255:99 chr1 162313597 . T C 197 . DP=87;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,58,26;MQ=60;FQ=-280 GT:PL:GQ 1/1:230,253,0:99 chr1 162313735 . C T 225 . DP=91;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,27,12,28;MQ=60;FQ=225;PV4=0.19,0.0017,1,0.42 GT:PL:GQ 0/1:255,0,255:99 chr1 162335052 . C T 81 . DP=12;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:114,30,0:57 chr1 162335424 . T C 30.5 . DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:63,12,0:21 chr1 162343774 . A G 197 . DP=51;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,38,9;MQ=59;FQ=-142;PV4=1,0.061,1,0.23 GT:PL:GQ 1/1:230,115,0:99 chr1 162344102 . C T 222 . DP=66;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,44,21;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr1 162344390 . A G 222 . DP=42;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,31;MQ=60;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 162345091 . G A 222 . DP=29;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,24,3;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 162346433 . CAAAAAAAA CAAAAAAA 6.55 . INDEL;DP=34;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,7,11,5;MQ=60;FQ=6.55;PV4=0.46,7.3e-24,1,0.3 GT:PL:GQ 0/1:43,0,43:43 chr1 162348662 . C T 8.44 . DP=2;VDB=0.0165;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr1 162367103 . G T 206 . DP=166;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,84,71;MQ=59;FQ=-282 GT:PL:GQ 1/1:239,255,0:99 chr1 162367235 . G A 182 . DP=33;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,32;MQ=59;FQ=-123 GT:PL:GQ 1/1:215,96,0:99 chr1 162467014 . C G 66 . DP=36;VDB=0.0190;AF1=0.5;AC1=1;DP4=18,6,10,2;MQ=59;FQ=69;PV4=0.69,1.2e-11,1,1 GT:PL:GQ 0/1:96,0,255:99 chr1 162558705 . C T 33 . DP=21;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,8,1,9;MQ=60;FQ=36;PV4=1,3.2e-13,1,0.038 GT:PL:GQ 0/1:63,0,183:66 chr1 162722846 . C G 141 . DP=14;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,11,3;MQ=58;FQ=-69 GT:PL:GQ 1/1:174,42,0:81 chr1 162740327 . T C 222 . DP=141;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,55,77;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 162742117 . C T 107 . DP=40;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,15,4,13;MQ=60;FQ=110;PV4=0.5,1.4e-17,1,1 GT:PL:GQ 0/1:137,0,255:99 chr1 162742180 . T C 44.3 . DP=5;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:77,15,0:27 chr1 162743418 . G T 178 . DP=34;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,30;MQ=60;FQ=-129 GT:PL:GQ 1/1:211,102,0:99 chr1 162748588 . C A 76.1 . DP=7;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:109,18,0:33 chr1 162754049 . G A 70 . DP=15;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,0,6,2;MQ=47;FQ=73;PV4=0.47,5.7e-06,1,0.16 GT:PL:GQ 0/1:100,0,124:99 chr1 162754212 . G A 69 . DP=27;VDB=0.0384;AF1=0.5;AC1=1;DP4=7,9,7,3;MQ=33;FQ=72;PV4=0.25,2e-05,0.04,0.22 GT:PL:GQ 0/1:99,0,213:99 chr1 162754244 . T G 112 . DP=13;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,1,10;MQ=29;FQ=-60 GT:PL:GQ 1/1:145,33,0:63 chr1 162760551 . C T 18.1 . DP=22;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,5,6,0;MQ=36;FQ=21;PV4=0.26,6.3e-05,0.47,1 GT:PL:GQ 0/1:48,0,213:51 chr1 162760554 . T C 222 . DP=23;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,5;MQ=35;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 162765475 . G C 222 . DP=52;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,23,28;MQ=28;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 162766476 . C T 64 . DP=98;VDB=0.0365;AF1=0.5;AC1=1;DP4=23,34,16,23;MQ=60;FQ=67;PV4=1,9.3e-32,0.11,1 GT:PL:GQ 0/1:94,0,255:97 chr1 162787358 . C T 13.2 . DP=81;VDB=0.0298;AF1=0.5;AC1=1;DP4=19,35,13,14;MQ=40;FQ=16.1;PV4=0.34,1.4e-30,0.052,1 GT:PL:GQ 0/1:43,0,255:46 chr1 162822771 . A C 140 . DP=13;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,10,3;MQ=60;FQ=-66 GT:PL:GQ 1/1:173,39,0:75 chr1 162824553 . G A 136 . DP=53;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,4,24,7;MQ=60;FQ=139;PV4=1,9.4e-20,1,1 GT:PL:GQ 0/1:166,0,254:99 chr1 162825258 . T C 134 . DP=16;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,8,1,7;MQ=60;FQ=121;PV4=1,0.039,1,0.38 GT:PL:GQ 0/1:164,0,148:99 chr1 162825457 . C A 167 . DP=88;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,24,21,20;MQ=60;FQ=170;PV4=0.83,1.9e-26,1,1 GT:PL:GQ 0/1:197,0,255:99 chr1 163117351 . G T 24 . DP=20;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,6,0,11;MQ=60;FQ=27;PV4=0.16,2.5e-09,1,0.49 GT:PL:GQ 0/1:54,0,165:57 chr1 163122528 . G C 30 . DP=6;VDB=0.0017;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=60;FQ=28.9;PV4=1,0.00047,1,0.081 GT:PL:GQ 0/1:60,0,58:59 chr1 163137907 . T A 71 . DP=18;VDB=0.0066;AF1=0.5;AC1=1;DP4=8,0,6,2;MQ=59;FQ=74;PV4=0.47,4.9e-05,0.17,1 GT:PL:GQ 0/1:101,0,130:99 chr1 163142537 . G A 72.5 . DP=4;VDB=0.0027;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:105,12,0:21 chr1 163187263 . G A 119 . DP=8;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:152,18,0:33 chr1 163309302 . C T 222 . DP=57;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,7,49;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 164532325 . T C 83 . DP=9;VDB=0.0004;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=57;FQ=45;PV4=1,0.33,1,1 GT:PL:GQ 0/1:113,0,72:75 chr1 164559536 . A G 222 . DP=13;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,10,2;MQ=60;FQ=-63 GT:PL:GQ 1/1:255,36,0:69 chr1 164789444 . A G 222 . DP=19;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,16;MQ=59;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr1 165173216 . A G 222 . DP=35;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,21;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 165180089 . T A 27 . DP=17;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,7,2,3;MQ=60;FQ=30;PV4=1,0.00058,1,1 GT:PL:GQ 0/1:57,0,219:60 chr1 165218679 . C T 225 . DP=69;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,12,29,6;MQ=59;FQ=225;PV4=0.11,0.13,0.042,0.12 GT:PL:GQ 0/1:255,0,255:99 chr1 165375895 . A C 8.44 . DP=3;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr1 165376043 . T C 210 . DP=26;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,14,11;MQ=59;FQ=-102 GT:PL:GQ 1/1:243,75,0:99 chr1 165377389 . T C 110 . DP=7;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:143,18,0:33 chr1 165377552 . G A 91 . DP=104;VDB=0.0392;AF1=0.5;AC1=1;DP4=31,33,16,19;MQ=60;FQ=94;PV4=0.84,1.2e-35,0.089,0.48 GT:PL:GQ 0/1:121,0,255:99 chr1 165378729 . Tacacacacacacacacacacacacacaca Tacacacacacacacacacacacaca 214 . INDEL;DP=15;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,14,1;MQ=58;FQ=-79.5 GT:PL:GQ 1/1:255,45,0:87 chr1 165389285 . C G 59 . DP=47;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,19,6,10;MQ=60;FQ=62;PV4=1,3.3e-13,1,0.38 GT:PL:GQ 0/1:89,0,255:92 chr1 165601365 . T C 222 . DP=36;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,20,15;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 165601466 . G A 157 . DP=25;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,8,14;MQ=60;FQ=-93 GT:PL:GQ 1/1:190,66,0:99 chr1 165623411 . C G 55 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:87,9,0:16 chr1 165623451 . C T 61 . DP=30;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,27,1;MQ=59;FQ=-111 GT:PL:GQ 1/1:94,84,0:99 chr1 165623693 . G C 75 . DP=9;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:108,27,0:51 chr1 165630475 . C T 57 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:89,9,0:16 chr1 165630495 . T C 157 . DP=10;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,10,0;MQ=58;FQ=-57 GT:PL:GQ 1/1:190,30,0:57 chr1 165630698 . A G 208 . DP=17;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,15;MQ=60;FQ=-75 GT:PL:GQ 1/1:241,48,0:93 chr1 165651502 . G C 50.3 . DP=5;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:83,15,0:27 chr1 165652273 . A G 222 . DP=82;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,52,26;MQ=60;FQ=-262 GT:PL:GQ 1/1:255,235,0:99 chr1 165652445 . A G 52 . DP=18;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81 GT:PL:GQ 1/1:85,54,0:99 chr1 165727274 . ctcttcttc ctcttc 214 . INDEL;DP=125;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,65,54;MQ=57;FQ=-290 GT:PL:GQ 1/1:255,255,0:99 chr1 165737704 . C G 211 . DP=112;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,65,42;MQ=60;FQ=-282 GT:PL:GQ 1/1:244,255,0:99 chr1 165859630 . C G 222 . DP=53;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,19,31;MQ=56;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 165859640 . GTGTTG GTGTTGTTG 217 . INDEL;DP=49;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,11,8,14;MQ=58;FQ=217;PV4=0.75,1,0.04,1 GT:PL:GQ 0/1:255,0,255:99 chr1 166029970 . T C 163 . DP=38;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,26;MQ=59;FQ=-141 GT:PL:GQ 1/1:196,114,0:99 chr1 166124134 . A G 164 . DP=108;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,40,60;MQ=60;FQ=-282 GT:PL:GQ 1/1:197,255,0:99 chr1 166591043 . T C 46 . DP=19;VDB=0.0014;AF1=0.5;AC1=1;DP4=9,1,9,0;MQ=60;FQ=49;PV4=1,5.1e-10,1,1 GT:PL:GQ 0/1:76,0,183:79 chr1 166831703 . CAAA CAAAA 54.5 . INDEL;DP=10;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,4,1,3;MQ=60;FQ=57.3;PV4=1,1,1,1 GT:PL:GQ 0/1:92,0,106:95 chr1 166833199 . C A 79 . DP=54;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,20,7,19;MQ=60;FQ=82;PV4=1,8.1e-32,1,1 GT:PL:GQ 0/1:109,0,255:99 chr1 166961857 . G A 33 . DP=11;VDB=0.0019;AF1=0.5013;AC1=1;DP4=2,0,8,0;MQ=60;FQ=-5.45;PV4=1,0.013,1,1 GT:PL:GQ 0/1:63,0,23:26 chr1 166963234 . T C 53 . DP=26;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,4,7,4;MQ=60;FQ=56;PV4=0.68,3e-13,1,1 GT:PL:GQ 0/1:83,0,255:86 chr1 167059462 . G C 225 . DP=105;VDB=0.0345;AF1=0.5;AC1=1;DP4=34,17,30,19;MQ=60;FQ=225;PV4=0.68,0.08,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 167059575 . G T 225 . DP=85;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,36,7,31;MQ=60;FQ=225;PV4=0.79,0.33,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 167082869 . G A 56 . DP=83;VDB=0.0216;AF1=0.5;AC1=1;DP4=40,3,35,3;MQ=60;FQ=59;PV4=1,1e-35,1,1 GT:PL:GQ 0/1:86,0,255:89 chr1 167088473 . C A 34 . DP=13;VDB=0.0053;AF1=0.5;AC1=1;DP4=4,1,7,0;MQ=58;FQ=37;PV4=0.42,3.2e-05,1,1 GT:PL:GQ 0/1:64,0,114:67 chr1 167095163 . G C 128 . DP=27;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,3,12,7;MQ=60;FQ=127;PV4=1,4.7e-12,1,1 GT:PL:GQ 0/1:158,0,156:99 chr1 167095765 . G A 85 . DP=30;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,13,5,2;MQ=60;FQ=88;PV4=0.21,0.47,1,0.48 GT:PL:GQ 0/1:115,0,255:99 chr1 167095881 . G A 111 . DP=25;VDB=0.0359;AF1=0.5;AC1=1;DP4=8,3,7,5;MQ=60;FQ=114;PV4=0.67,0.00052,1,1 GT:PL:GQ 0/1:141,0,193:99 chr1 167097739 . C A 159 . DP=36;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,8,12,11;MQ=60;FQ=162;PV4=0.48,5.1e-12,1,1 GT:PL:GQ 0/1:189,0,217:99 chr1 167345218 . A C 17.1 . DP=18;VDB=0.0216;AF1=0.5;AC1=1;DP4=10,1,7,0;MQ=60;FQ=20.1;PV4=1,8.9e-09,1,1 GT:PL:GQ 0/1:47,0,187:50 chr1 167367193 . C T 70 . DP=46;VDB=0.0164;AF1=0.5;AC1=1;DP4=20,5,18,2;MQ=59;FQ=73;PV4=0.44,2.9e-21,1,1 GT:PL:GQ 0/1:100,0,255:99 chr1 167382374 . A C 213 . DP=26;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,7,19;MQ=56;FQ=-105 GT:PL:GQ 1/1:246,78,0:99 chr1 167382399 . agtgtgtgtgtgtgtgtgtgtgtgtgtg agtgtgtgtgtgtgtgtgtgtgtg 214 . INDEL;DP=16;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,13;MQ=56;FQ=-73.5 GT:PL:GQ 1/1:255,39,0:75 chr1 167403212 . G A 11.3 . DP=7;VDB=0.0180;AF1=0.5;AC1=1;DP4=2,1,4,0;MQ=60;FQ=14.2;PV4=0.43,5e-05,1,0.11 GT:PL:GQ 0/1:41,0,83:43 chr1 167404078 . G A 46 . DP=9;VDB=0.0276;AF1=0.5;AC1=1;DP4=4,1,2,2;MQ=59;FQ=49;PV4=0.52,0.14,1,0.32 GT:PL:GQ 0/1:76,0,109:79 chr1 167404179 . G A 19.1 . DP=7;VDB=0.0224;AF1=0.5;AC1=1;DP4=0,4,1,2;MQ=59;FQ=22;PV4=0.43,0.096,1,1 GT:PL:GQ 0/1:49,0,83:52 chr1 167408565 . G T 183 . DP=82;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,21,18,23;MQ=59;FQ=186;PV4=1,8.1e-23,1,1 GT:PL:GQ 0/1:213,0,255:99 chr1 167515272 . T C 188 . DP=28;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,5;MQ=60;FQ=-111 GT:PL:GQ 1/1:221,84,0:99 chr1 167599583 . G A 166 . DP=14;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,9,4;MQ=60;FQ=-66 GT:PL:GQ 1/1:199,39,0:75 chr1 167652995 . C A 31 . DP=21;VDB=0.0118;AF1=0.5;AC1=1;DP4=12,1,7,0;MQ=60;FQ=34;PV4=1,2.2e-05,1,1 GT:PL:GQ 0/1:61,0,186:64 chr1 167666218 . C T 103 . DP=17;VDB=0.0140;AF1=0.5;AC1=1;DP4=9,1,7,0;MQ=59;FQ=106;PV4=1,1,0.12,1 GT:PL:GQ 0/1:133,0,172:99 chr1 167666316 . T C 82 . DP=51;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,11,13,8;MQ=59;FQ=85;PV4=0.56,2.9e-21,0.47,0.39 GT:PL:GQ 0/1:112,0,255:99 chr1 167734717 . A G 86 . DP=10;VDB=0.0025;AF1=0.5;AC1=1;DP4=4,0,6,0;MQ=60;FQ=65;PV4=1,0.047,1,0.34 GT:PL:GQ 0/1:116,0,92:95 chr1 167778843 . G A 15.9 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:47,6,0:10 chr1 167787265 . C T 70 . DP=40;VDB=0.0014;AF1=0.5;AC1=1;DP4=20,0,19,0;MQ=60;FQ=73;PV4=1,2e-16,1,1 GT:PL:GQ 0/1:100,0,184:99 chr1 167792356 . G A 34 . DP=59;VDB=0.0118;AF1=0.5;AC1=1;DP4=8,25,0,25;MQ=60;FQ=37;PV4=0.0078,1.4e-28,1,1 GT:PL:GQ 0/1:64,0,255:67 chr1 167805439 . G A 61 . DP=27;VDB=0.0244;AF1=0.5;AC1=1;DP4=10,1,13,1;MQ=60;FQ=64;PV4=1,1.6e-11,1,1 GT:PL:GQ 0/1:91,0,183:94 chr1 167806642 . C G 116 . DP=85;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,26,9,33;MQ=60;FQ=119;PV4=0.32,4.3e-23,1,1 GT:PL:GQ 0/1:146,0,255:99 chr1 167806647 . T A 190 . DP=77;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,53;MQ=60;FQ=-241 GT:PL:GQ 1/1:223,214,0:99 chr1 167806696 . T C 222 . DP=44;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,4,39;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 167806714 . G A 120 . DP=28;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,14,0,10;MQ=60;FQ=123;PV4=1,0.47,1,1 GT:PL:GQ 0/1:150,0,174:99 chr1 167815167 . T C 95 . DP=50;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,10,12,10;MQ=60;FQ=98;PV4=0.57,2.6e-17,1,1 GT:PL:GQ 0/1:125,0,255:99 chr1 167815610 . C A 13.2 . DP=7;VDB=0.0022;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=16.1;PV4=1,5.4e-05,1,1 GT:PL:GQ 0/1:43,0,79:46 chr1 167817639 . A G 225 . DP=48;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,7,16,8;MQ=60;FQ=225;PV4=1,0.24,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 167823512 . T C 60 . DP=26;VDB=0.0081;AF1=0.5;AC1=1;DP4=10,1,14,1;MQ=60;FQ=63;PV4=1,1.5e-19,1,0.2 GT:PL:GQ 0/1:90,0,190:93 chr1 167825485 . T C 225 . DP=141;VDB=0.0393;AF1=0.5;AC1=1;DP4=38,43,24,34;MQ=60;FQ=225;PV4=0.6,0.015,1,0.16 GT:PL:GQ 0/1:255,0,255:99 chr1 167825718 . C T 85 . DP=10;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,5,0,5;MQ=60;FQ=85.5;PV4=1,0.46,1,1 GT:PL:GQ 0/1:115,0,116:99 chr1 167906239 . A C 222 . DP=19;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,9,9;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr1 168013850 . T C 222 . DP=23;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,11;MQ=59;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr1 168035104 . G C 40.5 . DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:73,12,0:21 chr1 168106716 . T C 166 . DP=36;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,5,27;MQ=60;FQ=-123 GT:PL:GQ 1/1:199,96,0:99 chr1 168200733 . T C 31 . DP=41;VDB=0.0271;AF1=0.5;AC1=1;DP4=15,0,11,3;MQ=59;FQ=34;PV4=0.1,7.8e-24,1,0.21 GT:PL:GQ 0/1:61,0,178:64 chr1 168205991 . G T 171 . DP=85;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,24,23,16;MQ=59;FQ=174;PV4=0.28,1.3e-29,1,1 GT:PL:GQ 0/1:201,0,255:99 chr1 168208308 . T C 120 . DP=42;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,8,17,5;MQ=60;FQ=123;PV4=0.31,6.3e-22,1,1 GT:PL:GQ 0/1:150,0,255:99 chr1 168262289 . A G 86 . DP=21;VDB=0.0008;AF1=0.5;AC1=1;DP4=8,0,12,1;MQ=59;FQ=89;PV4=1,1.1e-10,1,0.16 GT:PL:GQ 0/1:116,0,135:99 chr1 168262299 . C T 91 . DP=26;VDB=0.0025;AF1=0.5;AC1=1;DP4=10,0,15,1;MQ=59;FQ=93.8;PV4=1,4e-09,1,1 GT:PL:GQ 0/1:121,0,135:99 chr1 168274201 . G A 26 . DP=25;VDB=0.0244;AF1=0.5;AC1=1;DP4=9,5,10,1;MQ=59;FQ=29;PV4=0.18,1.9e-16,0.13,1 GT:PL:GQ 0/1:56,0,255:59 chr1 168282261 . T A 124 . DP=36;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,5,6,19;MQ=60;FQ=127;PV4=0.23,1.5e-13,1,1 GT:PL:GQ 0/1:154,0,185:99 chr1 168545949 . G A 137 . DP=60;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,17,13,17;MQ=56;FQ=140;PV4=0.79,1.6e-15,0.37,0.42 GT:PL:GQ 0/1:167,0,255:99 chr1 168549422 . C T 45 . DP=21;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,6,0,10;MQ=59;FQ=48;PV4=0.087,5.6e-13,1,0.038 GT:PL:GQ 0/1:75,0,226:78 chr1 168550535 . A G 58 . DP=11;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,6,0,4;MQ=60;FQ=61;PV4=1,1,1,0.45 GT:PL:GQ 0/1:88,0,107:91 chr1 168665747 . C CT 214 . INDEL;DP=66;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,36,30;MQ=60;FQ=-234 GT:PL:GQ 1/1:255,199,0:99 chr1 168665974 . T C 41.5 . DP=4;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:74,12,0:21 chr1 168683476 . C T 125 . DP=60;VDB=0.0322;AF1=0.5;AC1=1;DP4=25,10,20,5;MQ=59;FQ=128;PV4=0.55,8.8e-13,1,1 GT:PL:GQ 0/1:155,0,255:99 chr1 169080837 . C T 4.13 . DP=17;VDB=0.0190;AF1=0.4998;AC1=1;DP4=0,11,0,6;MQ=59;FQ=6.2;PV4=1,9.6e-13,0.092,1 GT:PL:GQ 0/1:32,0,171:31 chr1 169094100 . T A 86 . DP=64;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,9,23,8;MQ=60;FQ=89;PV4=1,2.5e-23,1,1 GT:PL:GQ 0/1:116,0,255:99 chr1 169099061 . G A 15.1 . DP=5;VDB=0.0060;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=17.8;PV4=1,0.0058,1,1 GT:PL:GQ 0/1:45,0,57:48 chr1 169102223 . G C 201 . DP=32;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,13,2,15;MQ=60;FQ=197;PV4=1,0.14,1,1 GT:PL:GQ 0/1:231,0,225:99 chr1 169138027 . A G 225 . DP=24;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,4,8,7;MQ=58;FQ=159;PV4=1,0.003,0.15,0.2 GT:PL:GQ 0/1:255,0,186:99 chr1 169138307 . C A 31 . DP=19;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,3,6,2;MQ=59;FQ=34;PV4=1,1.9e-07,0.15,0.34 GT:PL:GQ 0/1:61,0,199:64 chr1 169138318 . T A 38 . DP=21;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,3,5,4;MQ=59;FQ=41;PV4=1,4.9e-11,0.17,0.03 GT:PL:GQ 0/1:68,0,208:71 chr1 169138868 . C T 107 . DP=13;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,5,0,8;MQ=60;FQ=84;PV4=1,0.11,1,1 GT:PL:GQ 0/1:137,0,111:99 chr1 169159866 . G T 20 . DP=19;VDB=0.0118;AF1=0.5;AC1=1;DP4=6,2,7,1;MQ=56;FQ=23;PV4=1,5.7e-05,0.28,1 GT:PL:GQ 0/1:50,0,160:53 chr1 169200111 . C T 63 . DP=19;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,6,2,8;MQ=60;FQ=66;PV4=1,2.1e-08,1,1 GT:PL:GQ 0/1:93,0,150:96 chr1 169216412 . C G 63 . DP=15;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,14;MQ=60;FQ=-69 GT:PL:GQ 1/1:96,42,0:81 chr1 169256501 . C T 39 . DP=45;VDB=0.0271;AF1=0.5;AC1=1;DP4=22,5,13,2;MQ=59;FQ=42;PV4=1,2.2e-22,1,0.46 GT:PL:GQ 0/1:69,0,255:72 chr1 169272299 . A T 116 . DP=36;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,2,16,4;MQ=59;FQ=119;PV4=0.68,3.8e-12,1,1 GT:PL:GQ 0/1:146,0,210:99 chr1 169272451 . A T 6.95 . DP=12;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:38,9,0:10 chr1 169272453 . G A 6.95 . DP=12;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:38,9,0:10 chr1 169293721 . G A 100 . DP=55;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,20,4,25;MQ=60;FQ=103;PV4=1,2.5e-26,1,1 GT:PL:GQ 0/1:130,0,255:99 chr1 169345704 . G A 28 . DP=26;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,0,8,0;MQ=60;FQ=31;PV4=1,4e-10,1,1 GT:PL:GQ 0/1:58,0,181:61 chr1 169351596 . A G 133 . DP=22;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,13,1,7;MQ=58;FQ=136;PV4=1,1,1,1 GT:PL:GQ 0/1:163,0,209:99 chr1 169390957 . A T 22 . DP=10;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,1,4,2;MQ=60;FQ=25;PV4=1,9.7e-06,1,1 GT:PL:GQ 0/1:52,0,102:55 chr1 169391154 . A G 85 . DP=39;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,6,13,13;MQ=60;FQ=88;PV4=1,1.3e-26,1,1 GT:PL:GQ 0/1:115,0,232:99 chr1 169394226 . A G 225 . DP=19;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,3,4,8;MQ=60;FQ=105;PV4=0.63,1,1,0.27 GT:PL:GQ 0/1:255,0,132:99 chr1 169435027 . C T 184 . DP=38;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,37,0;MQ=60;FQ=-138 GT:PL:GQ 1/1:217,111,0:99 chr1 169493953 . A C 222 . DP=46;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,42,4;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 169498834 . T C 130 . DP=43;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,41,2;MQ=60;FQ=-156 GT:PL:GQ 1/1:163,129,0:99 chr1 169510233 . G A 196 . DP=22;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,10,11;MQ=60;FQ=-90 GT:PL:GQ 1/1:229,63,0:99 chr1 169512291 . G C 225 . DP=147;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,41,41,37;MQ=60;FQ=225;PV4=0.13,0.28,0.33,1 GT:PL:GQ 0/1:255,0,255:99 chr1 169519049 . T C 219 . DP=46;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,32,12;MQ=60;FQ=-159 GT:PL:GQ 1/1:252,132,0:99 chr1 169528384 . G A 225 . DP=72;VDB=0.0380;AF1=0.5;AC1=1;DP4=29,9,27,6;MQ=58;FQ=225;PV4=0.77,0.11,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 169528580 . C T 157 . DP=48;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,23,1,17;MQ=60;FQ=160;PV4=0.23,1,1,1 GT:PL:GQ 0/1:187,0,255:99 chr1 169529826 . C A 99 . DP=41;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,13,8,9;MQ=60;FQ=102;PV4=1,1.7e-11,1,0.35 GT:PL:GQ 0/1:129,0,255:99 chr1 169529973 . C T 7.8 . DP=7;VDB=0.0215;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=10.4;PV4=1,0.0024,1,1 GT:PL:GQ 0/1:37,0,98:39 chr1 169541513 . C G 225 . DP=54;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,12,14,9;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 169559326 . G A 39 . DP=36;VDB=0.0014;AF1=0.5;AC1=1;DP4=19,2,15,0;MQ=60;FQ=42;PV4=0.5,1.7e-22,1,1 GT:PL:GQ 0/1:69,0,242:72 chr1 169559333 . ATTTTT ATTTT 6.55 . INDEL;DP=44;VDB=0.0033;AF1=0.5;AC1=1;DP4=26,2,16,0;MQ=60;FQ=9.05;PV4=0.53,1.9e-27,1,1 GT:PL:GQ 0/1:43,0,78:44 chr1 169559635 . T C 3.02 . DP=3;VDB=0.0194;AF1=0.5001;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-3.6;PV4=1,0.034,1,0.23 GT:PL:GQ 0/1:30,0,28:28 chr1 169560727 . TAAAAAAAAAAAA TAAAAAAAAAAAAAAA,TAAAAAAAAAAAAAA 20.6 . INDEL;DP=16;VDB=0.0398;AF1=1;AC1=2;DP4=1,2,5,4;MQ=54;FQ=-35.5;PV4=1,1,0.14,1 GT:PL:GQ 1/1:87,31,30,57,0,57:4 chr1 169562904 . C T 104 . DP=66;VDB=0.0400;AF1=0.5;AC1=1;DP4=24,18,16,7;MQ=60;FQ=107;PV4=0.43,7.5e-19,1,0.29 GT:PL:GQ 0/1:134,0,255:99 chr1 169563062 . G A 70 . DP=22;VDB=0.0011;AF1=0.5;AC1=1;DP4=3,7,1,11;MQ=60;FQ=73;PV4=0.29,1.5e-09,1,0.48 GT:PL:GQ 0/1:100,0,206:99 chr1 169564130 . T G 222 . DP=25;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,2,23;MQ=59;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 169565346 . C A 40 . DP=38;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,14,6,7;MQ=59;FQ=43;PV4=1,1.2e-14,0.084,1 GT:PL:GQ 0/1:70,0,255:73 chr1 169565393 . C A 48 . DP=36;VDB=0.0384;AF1=0.5;AC1=1;DP4=8,14,4,9;MQ=60;FQ=51;PV4=1,8.8e-17,1,1 GT:PL:GQ 0/1:78,0,255:81 chr1 169566308 . G A 225 . DP=82;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,34,11,22;MQ=59;FQ=225;PV4=0.62,0.012,0.19,1 GT:PL:GQ 0/1:255,0,255:99 chr1 169566313 . C T 222 . DP=78;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,20,54;MQ=59;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr1 169566326 . G A 151 . DP=64;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,28,7,22;MQ=59;FQ=154;PV4=0.55,8.5e-19,0.062,0.39 GT:PL:GQ 0/1:181,0,255:99 chr1 169580717 . T C 93 . DP=14;VDB=0.0140;AF1=0.5;AC1=1;DP4=8,0,6,0;MQ=60;FQ=96;PV4=1,0.36,1,1 GT:PL:GQ 0/1:123,0,149:99 chr1 169580972 . CA CATA 217 . INDEL;DP=24;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,8,1,12;MQ=59;FQ=213;PV4=1,1,0.21,0.0026 GT:PL:GQ 0/1:255,0,248:99 chr1 169599254 . T C 113 . DP=110;VDB=0.0365;AF1=0.5;AC1=1;DP4=38,17,34,19;MQ=60;FQ=116;PV4=0.68,7.1e-47,0.16,1 GT:PL:GQ 0/1:143,0,255:99 chr1 169890933 . A G 114 . DP=75;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,18,51;MQ=60;FQ=-201;PV4=0.27,1.7e-08,0.45,0.26 GT:PL:GQ 1/1:147,174,0:99 chr1 169923041 . GTTTTTT GTTTTTTT 33.5 . INDEL;DP=11;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-67.5 GT:PL:GQ 1/1:74,33,0:60 chr1 169941761 . A T 76.1 . DP=7;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:109,21,0:39 chr1 169947146 . CAAAAAAAAAAA CAAAAAAAAAAAA 6.55 . INDEL;DP=17;VDB=0.0398;AF1=1;AC1=2;DP4=1,0,10,3;MQ=60;FQ=-64.5;PV4=1,1,1,0.2 GT:PL:GQ 1/1:46,30,0:32 chr1 169952385 . G T 50 . DP=24;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,19,0;MQ=60;FQ=-84 GT:PL:GQ 1/1:83,57,0:99 chr1 169985796 . A G 11.3 . DP=6;VDB=0.0059;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=60;FQ=14;PV4=1,0.00016,1,0.45 GT:PL:GQ 0/1:41,0,54:43 chr1 170135669 . C T 197 . DP=21;VDB=0.0164;AF1=0.5;AC1=1;DP4=8,1,9,3;MQ=59;FQ=135;PV4=0.6,1,0.2,1 GT:PL:GQ 0/1:227,0,162:99 chr1 170135760 . T C 96 . DP=57;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,6,22,11;MQ=60;FQ=99;PV4=0.57,7.7e-30,1,1 GT:PL:GQ 0/1:126,0,255:99 chr1 170135765 . T C 64 . DP=57;VDB=0.0298;AF1=0.5;AC1=1;DP4=18,7,19,9;MQ=60;FQ=67;PV4=0.77,2.3e-31,1,1 GT:PL:GQ 0/1:94,0,255:97 chr1 170135828 . C T 225 . DP=81;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,26,16,19;MQ=60;FQ=225;PV4=1,0.4,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 170136787 . C T 75 . DP=36;VDB=0.0343;AF1=0.5;AC1=1;DP4=11,13,3,8;MQ=59;FQ=78;PV4=0.46,3.1e-05,0.071,1 GT:PL:GQ 0/1:105,0,255:99 chr1 170501385 . A C 222 . DP=16;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,8,8;MQ=59;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 170501456 . C T 11.3 . DP=15;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,5,1,5;MQ=60;FQ=14.2;PV4=0.58,4.6e-07,1,1 GT:PL:GQ 0/1:41,0,197:43 chr1 170501521 . AC A 105 . INDEL;DP=7;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,7;MQ=57;FQ=-55.5 GT:PL:GQ 1/1:145,21,0:39 chr1 170502517 . A G 36.8 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:68,6,0:10 chr1 170511604 . T C 73 . DP=34;VDB=0.0216;AF1=0.5;AC1=1;DP4=11,2,17,2;MQ=59;FQ=76;PV4=1,4.7e-18,1,0.14 GT:PL:GQ 0/1:103,0,197:99 chr1 170521650 . T G 5.46 . DP=35;VDB=0.0033;AF1=0.4999;AC1=1;DP4=0,20,0,12;MQ=59;FQ=7.8;PV4=1,3.2e-14,1,1 GT:PL:GQ 0/1:34,0,184:34 chr1 170916646 . G T 225 . DP=86;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,24,19,17;MQ=60;FQ=225;PV4=0.66,0.43,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 170993444 . Ggtgtgtgtgtgtgtgtgtgtgtgtgtgt GGTgtgtgtgtgtgtgtgtgtgtgtgtgtgt 5.79 . INDEL;DP=3;VDB=0.0040;AF1=0.5001;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-3.63;PV4=1,1,1,1 GT:PL:GQ 0/1:42,0,34:38 chr1 171061990 . A G 10.4 . DP=7;VDB=0.0124;AF1=0.5;AC1=1;DP4=0,5,0,2;MQ=57;FQ=13.2;PV4=1,0.23,0.059,1 GT:PL:GQ 0/1:40,0,112:42 chr1 171070472 . G T 66 . DP=8;VDB=0.0099;AF1=0.5016;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-6.18;PV4=1,0.43,1,1 GT:PL:GQ 0/1:96,0,22:25 chr1 171072862 . G T 205 . DP=48;VDB=0.0066;AF1=0.5;AC1=1;DP4=22,2,21,2;MQ=60;FQ=207;PV4=1,0.18,1,0.18 GT:PL:GQ 0/1:235,0,239:99 chr1 171076966 . G A 78 . DP=95;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,29,16,35;MQ=59;FQ=81;PV4=0.82,1.6e-45,0.1,1 GT:PL:GQ 0/1:108,0,255:99 chr1 171077165 . G A 15.1 . DP=36;VDB=0.0118;AF1=0.5;AC1=1;DP4=18,4,12,1;MQ=60;FQ=18.1;PV4=0.63,8.8e-17,1,1 GT:PL:GQ 0/1:45,0,255:48 chr1 171077198 . G A 225 . DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=29,7,21,5;MQ=60;FQ=225;PV4=1,0.061,1,0.17 GT:PL:GQ 0/1:255,0,255:99 chr1 171077502 . TCCCC TCCC 20.5 . INDEL;DP=7;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=6.51;PV4=1,0.37,1,1 GT:PL:GQ 0/1:58,0,40:43 chr1 171083174 . C T 225 . DP=83;VDB=0.0365;AF1=0.5;AC1=1;DP4=28,12,31,11;MQ=60;FQ=225;PV4=0.81,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 171083242 . A G 138 . DP=138;VDB=0.0365;AF1=0.5;AC1=1;DP4=40,29,33,30;MQ=60;FQ=141;PV4=0.6,8.1e-42,1,1 GT:PL:GQ 0/1:168,0,255:99 chr1 171083537 . T C 50 . DP=3;VDB=0.0170;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:82,9,0:16 chr1 171085314 . ATT ATTT 107 . INDEL;DP=15;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,1,8,0;MQ=60;FQ=70.5;PV4=0.43,1,1,0.19 GT:PL:GQ 0/1:145,0,105:99 chr1 171112490 . C T 145 . DP=25;VDB=0.0099;AF1=0.5;AC1=1;DP4=2,12,1,10;MQ=59;FQ=148;PV4=1,1,0.13,1 GT:PL:GQ 0/1:175,0,225:99 chr1 171115483 . A G 58 . DP=34;VDB=0.0081;AF1=0.5;AC1=1;DP4=17,0,15,0;MQ=59;FQ=61;PV4=1,5.1e-12,0.15,0.32 GT:PL:GQ 0/1:88,0,179:91 chr1 171115567 . G A 87 . DP=131;VDB=0.0380;AF1=0.5;AC1=1;DP4=40,21,33,21;MQ=60;FQ=90;PV4=0.7,1.5e-44,1,0.29 GT:PL:GQ 0/1:117,0,255:99 chr1 171115645 . G T 128 . DP=105;VDB=0.0298;AF1=0.5;AC1=1;DP4=19,41,11,33;MQ=60;FQ=131;PV4=0.52,2.7e-41,1,0.13 GT:PL:GQ 0/1:158,0,255:99 chr1 171116760 . C T 112 . DP=40;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,8,15,7;MQ=60;FQ=115;PV4=0.51,2.5e-17,1,1 GT:PL:GQ 0/1:142,0,255:99 chr1 171118840 . G A 92 . DP=17;VDB=0.0359;AF1=0.5;AC1=1;DP4=1,8,0,7;MQ=59;FQ=95;PV4=1,0.09,0.14,0.075 GT:PL:GQ 0/1:122,0,181:99 chr1 171121173 . A G 225 . DP=147;VDB=0.0392;AF1=0.5;AC1=1;DP4=51,21,50,21;MQ=60;FQ=225;PV4=1,0.051,0.5,0.4 GT:PL:GQ 0/1:255,0,255:99 chr1 171121268 . G A 142 . DP=194;VDB=0.0365;AF1=0.5;AC1=1;DP4=46,54,37,53;MQ=60;FQ=145;PV4=0.56,7.1e-70,0.13,1 GT:PL:GQ 0/1:172,0,255:99 chr1 171121421 . G T 103 . DP=53;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,22,6,18;MQ=60;FQ=106;PV4=0.49,1.5e-21,1,1 GT:PL:GQ 0/1:133,0,255:99 chr1 171168584 . C T 53 . DP=43;VDB=0.0140;AF1=0.5;AC1=1;DP4=7,17,6,11;MQ=59;FQ=56;PV4=0.74,3.8e-21,0.12,1 GT:PL:GQ 0/1:83,0,255:86 chr1 171168585 . A G 37 . DP=40;VDB=0.0140;AF1=0.5;AC1=1;DP4=5,16,6,6;MQ=60;FQ=40;PV4=0.15,7.1e-20,1,0.48 GT:PL:GQ 0/1:67,0,255:70 chr1 171227216 . T C 222 . DP=22;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,18,4;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 171227464 . T C 21 . DP=5;VDB=0.0223;AF1=0.5;AC1=1;DP4=0,2,1,2;MQ=60;FQ=22.8;PV4=1,0.015,1,0.25 GT:PL:GQ 0/1:51,0,56:53 chr1 171227487 . A G 4.13 . DP=4;VDB=0.0159;AF1=0.4998;AC1=1;DP4=0,2,1,1;MQ=60;FQ=6.17;PV4=1,0.022,1,1 GT:PL:GQ 0/1:32,0,52:31 chr1 171244759 . A C 98.3 . DP=5;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:131,15,0:27 chr1 171300959 . T C 166 . DP=26;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,3,22;MQ=60;FQ=-102 GT:PL:GQ 1/1:199,75,0:99 chr1 171301033 . C G 119 . DP=6;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:152,18,0:33 chr1 171303925 . C T 171 . DP=70;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,18,47;MQ=59;FQ=-223 GT:PL:GQ 1/1:204,196,0:99 chr1 171311003 . A C,T 152 . DP=68;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,49;MQ=60;FQ=-223 GT:PL:GQ 1/1:185,196,0,178,170,175:99 chr1 171482616 . A C 225 . DP=51;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,16,4,22;MQ=60;FQ=225;PV4=0.31,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 171486912 . G A 45 . DP=8;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,3,1,4;MQ=60;FQ=46.6;PV4=1,0.00043,1,0.41 GT:PL:GQ 0/1:75,0,79:77 chr1 171496895 . A G 20.6 . DP=4;VDB=0.0049;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:53,12,0:21 chr1 171509327 . G A 222 . DP=93;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,49,40;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 171511039 . C G 131 . DP=107;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,61,41;MQ=60;FQ=-282 GT:PL:GQ 1/1:164,255,0:99 chr1 171511442 . A G 63 . DP=12;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,8,0,4;MQ=60;FQ=66;PV4=1,1,1,1 GT:PL:GQ 0/1:93,0,145:96 chr1 171514731 . C G 222 . DP=38;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,18;MQ=58;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 171519487 . A C 64.1 . DP=7;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:97,21,0:39 chr1 171526570 . G A 222 . DP=230;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,121,101;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 171527322 . A G 67 . DP=22;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,20;MQ=60;FQ=-87 GT:PL:GQ 1/1:100,60,0:99 chr1 171535309 . T C 17.1 . DP=15;VDB=0.0025;AF1=0.5;AC1=1;DP4=7,0,7,0;MQ=57;FQ=20.1;PV4=1,1.9e-07,0.074,0.43 GT:PL:GQ 0/1:47,0,134:50 chr1 171535573 . T C 74 . DP=67;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,25,2,35;MQ=60;FQ=77;PV4=0.23,1.2e-37,0.19,1 GT:PL:GQ 0/1:104,0,255:99 chr1 171546833 . C A 222 . DP=53;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,46;MQ=59;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 171548617 . G A 118 . DP=159;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,54,29,52;MQ=60;FQ=121;PV4=0.22,2.8e-67,0.17,0.35 GT:PL:GQ 0/1:148,0,255:99 chr1 171548868 . T C 59 . DP=15;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:92,42,0:81 chr1 171556165 . G C 201 . DP=82;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,43,38;MQ=59;FQ=-271 GT:PL:GQ 1/1:234,244,0:99 chr1 171558516 . C T 172 . DP=35;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,18,10;MQ=58;FQ=-111 GT:PL:GQ 1/1:205,84,0:99 chr1 171607702 . C T 222 . DP=29;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,16,13;MQ=60;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 171679958 . G A 86 . DP=30;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,12,2,14;MQ=60;FQ=89;PV4=1,3.4e-12,1,1 GT:PL:GQ 0/1:116,0,194:99 chr1 171751051 . A G 68 . DP=46;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,12,3,14;MQ=60;FQ=71;PV4=0.026,3.3e-11,1,1 GT:PL:GQ 0/1:98,0,255:99 chr1 171751236 . T C 225 . DP=29;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,13,7,8;MQ=60;FQ=173;PV4=0.035,0.25,1,0.28 GT:PL:GQ 0/1:255,0,200:99 chr1 171753039 . A G 225 . DP=64;VDB=0.0393;AF1=0.5;AC1=1;DP4=14,16,18,15;MQ=60;FQ=225;PV4=0.62,1,1,0.006 GT:PL:GQ 0/1:255,0,255:99 chr1 171755170 . G A 52 . DP=19;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,8,1,6;MQ=60;FQ=55;PV4=1,6.4e-05,1,0.3 GT:PL:GQ 0/1:82,0,213:85 chr1 171763522 . C A 63 . DP=37;VDB=0.0066;AF1=0.5;AC1=1;DP4=18,3,15,1;MQ=60;FQ=66;PV4=0.62,1.2e-18,1,1 GT:PL:GQ 0/1:93,0,255:96 chr1 171765591 . G A 83 . DP=80;VDB=0.0392;AF1=0.5;AC1=1;DP4=32,18,17,10;MQ=60;FQ=86;PV4=1,2.6e-29,1,1 GT:PL:GQ 0/1:113,0,255:99 chr1 172007676 . G C 147 . DP=43;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,24,0,19;MQ=60;FQ=149;PV4=1,1,1,1 GT:PL:GQ 0/1:177,0,185:99 chr1 172011059 . G A 3.54 . DP=16;VDB=0.0099;AF1=0.4998;AC1=1;DP4=6,0,4,1;MQ=60;FQ=5.47;PV4=0.45,3.4e-07,1,0.11 GT:PL:GQ 0/1:31,0,126:30 chr1 172100831 . G A 37 . DP=14;VDB=0.0263;AF1=0.5;AC1=1;DP4=7,0,4,2;MQ=60;FQ=40;PV4=0.19,9.9e-08,1,0.16 GT:PL:GQ 0/1:67,0,143:70 chr1 172277925 . C T 111 . DP=20;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,4,3,10;MQ=60;FQ=114;PV4=0.61,2.5e-08,1,1 GT:PL:GQ 0/1:141,0,157:99 chr1 172356437 . A G 192 . DP=29;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,4,24;MQ=60;FQ=-111 GT:PL:GQ 1/1:225,84,0:99 chr1 172399596 . T G 14.2 . DP=13;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,5,0,7;MQ=56;FQ=17.1;PV4=1,0.004,1,1 GT:PL:GQ 0/1:44,0,94:47 chr1 172410967 . G A 134 . DP=36;VDB=0.0365;AF1=1;AC1=2;DP4=0,1,24,9;MQ=59;FQ=-100;PV4=0.29,3.6e-05,1,0.21 GT:PL:GQ 1/1:167,73,0:99 chr1 172411496 . A G 84.1 . DP=6;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,2,4;MQ=60;FQ=-45 GT:PL:GQ 1/1:117,18,0:33 chr1 172417781 . A G 116 . DP=13;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,1,12;MQ=60;FQ=-66 GT:PL:GQ 1/1:149,39,0:75 chr1 172425529 . C G 222 . DP=123;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,42,68;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 172431210 . G A 16.1 . DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:48,9,0:15 chr1 172434375 . G A 117 . DP=51;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,47,1;MQ=60;FQ=-171 GT:PL:GQ 1/1:150,144,0:99 chr1 172434812 . C T 185 . DP=75;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,20,47;MQ=60;FQ=-229 GT:PL:GQ 1/1:218,202,0:99 chr1 172437592 . G A 166 . DP=42;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,15;MQ=60;FQ=-141 GT:PL:GQ 1/1:199,114,0:99 chr1 172502479 . T C 135 . DP=25;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,5;MQ=60;FQ=-102 GT:PL:GQ 1/1:168,75,0:99 chr1 172525158 . G A 82 . DP=37;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,15,3,17;MQ=59;FQ=85;PV4=1,5.6e-15,1,1 GT:PL:GQ 0/1:112,0,233:99 chr1 172544877 . A C 6.02 . DP=3;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr1 172558524 . A G 225 . DP=111;VDB=0.0392;AF1=0.5;AC1=1;DP4=24,32,24,29;MQ=60;FQ=225;PV4=0.85,0.031,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr1 172578018 . AGGTAATTACCTTTAAGTAGTCCT A 15.6 . INDEL;DP=14;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,9,1,1;MQ=58;FQ=18.5;PV4=0.32,0.16,0.0081,0.16 GT:PL:GQ 0/1:53,0,255:56 chr1 172634734 . T C 110 . DP=23;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,22,1;MQ=60;FQ=-96 GT:PL:GQ 1/1:143,69,0:99 chr1 173157764 . G A 195 . DP=28;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,11,4,9;MQ=60;FQ=195;PV4=0.68,1,1,0.1 GT:PL:GQ 0/1:225,0,226:99 chr1 173472551 . T C 66 . DP=25;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,9,2,10;MQ=60;FQ=69;PV4=0.64,4.5e-15,1,1 GT:PL:GQ 0/1:96,0,252:99 chr1 173474429 . T C 124 . DP=127;VDB=0.0399;AF1=0.5;AC1=1;DP4=33,33,31,30;MQ=59;FQ=127;PV4=1,6.1e-50,1,0.11 GT:PL:GQ 0/1:154,0,255:99 chr1 173516871 . G C 144 . DP=96;VDB=0.0271;AF1=0.5;AC1=1;DP4=24,24,13,33;MQ=60;FQ=147;PV4=0.037,1.7e-37,0.15,0.36 GT:PL:GQ 0/1:174,0,255:99 chr1 173516903 . A G 225 . DP=84;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,28,7,32;MQ=60;FQ=225;PV4=0.13,0.34,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr1 173552541 . C G 13.9 . DP=3;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,2,0;MQ=47;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr1 173552783 . G A 225 . DP=31;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,9,7,8;MQ=58;FQ=225;PV4=1,0.025,0.077,0.4 GT:PL:GQ 0/1:255,0,255:99 chr1 173556699 . G T 11.1 . DP=2;VDB=0.0174;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr1 173569176 . T C 57 . DP=4;VDB=0.0133;AF1=0.5003;AC1=1;DP4=1,0,3,0;MQ=60;FQ=4.13;PV4=1,0.24,1,0.36 GT:PL:GQ 0/1:87,0,29:32 chr1 173839907 . C T 142 . DP=48;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,14,9,11;MQ=59;FQ=145;PV4=1,2.3e-13,1,0.48 GT:PL:GQ 0/1:172,0,255:99 chr1 173854660 . G A 27 . DP=5;VDB=0.0159;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=30;PV4=1,1,1,0.45 GT:PL:GQ 0/1:57,0,85:60 chr1 173941617 . T C 129 . DP=63;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,8,28,5;MQ=60;FQ=132;PV4=0.35,1.6e-16,1,0.12 GT:PL:GQ 0/1:159,0,255:99 chr1 174417231 . G A 222 . DP=61;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,44,11;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 174927388 . G C 120 . DP=6;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:153,18,0:33 chr1 174945171 . CTGTATGACTGTGATGTATGACTGTGATG CTGTATGACTGTGATG 77.5 . INDEL;DP=94;VDB=0.0298;AF1=0.5;AC1=1;DP4=34,24,9,8;MQ=54;FQ=80.5;PV4=0.78,0.0011,1.2e-33,1 GT:PL:GQ 0/1:115,0,255:99 chr1 174969271 . C T 86 . DP=23;VDB=0.0033;AF1=0.5;AC1=1;DP4=7,2,9,4;MQ=59;FQ=89;PV4=1,1.1e-05,0.21,1 GT:PL:GQ 0/1:116,0,156:99 chr1 175046488 . G A 134 . DP=13;VDB=0.0042;AF1=0.5;AC1=1;DP4=3,2,7,1;MQ=58;FQ=83;PV4=0.51,1,1,1 GT:PL:GQ 0/1:164,0,110:99 chr1 175046789 . A G 131 . DP=106;VDB=0.0399;AF1=0.5;AC1=1;DP4=25,25,24,26;MQ=60;FQ=134;PV4=1,1.5e-27,1,1 GT:PL:GQ 0/1:161,0,255:99 chr1 175052828 . G A 5.46 . DP=6;VDB=0.0040;AF1=0.4999;AC1=1;DP4=3,0,3,0;MQ=60;FQ=7.8;PV4=1,0.00028,1,0.4 GT:PL:GQ 0/1:34,0,79:34 chr1 175053101 . A T 101 . DP=64;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,25,4,28;MQ=60;FQ=104;PV4=0.51,8.5e-25,1,1 GT:PL:GQ 0/1:131,0,255:99 chr1 175054548 . C T 65 . DP=40;VDB=0.0298;AF1=0.5;AC1=1;DP4=16,4,18,1;MQ=59;FQ=68;PV4=0.34,8.6e-16,1,1 GT:PL:GQ 0/1:95,0,255:98 chr1 175087677 . G A 187 . DP=86;VDB=0.0400;AF1=0.5;AC1=1;DP4=23,20,27,14;MQ=60;FQ=190;PV4=0.27,2.6e-15,0.15,1 GT:PL:GQ 0/1:217,0,255:99 chr1 175087729 . T C 172 . DP=98;VDB=0.0380;AF1=0.5;AC1=1;DP4=23,28,19,25;MQ=60;FQ=175;PV4=1,7e-22,0.14,0.43 GT:PL:GQ 0/1:202,0,255:99 chr1 175092631 . A C 178 . DP=50;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,15,12,17;MQ=59;FQ=181;PV4=0.36,7.2e-17,0.4,1 GT:PL:GQ 0/1:208,0,255:99 chr1 175092674 . C T 210 . DP=34;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,13,20;MQ=59;FQ=-126 GT:PL:GQ 1/1:243,99,0:99 chr1 175092707 . C T 222 . DP=42;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,19,22;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 175092840 . T C 222 . DP=37;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,11,24;MQ=57;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 175097331 . G A 222 . DP=20;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,16,4;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr1 175097349 . C T 215 . DP=22;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,12,9;MQ=60;FQ=-90 GT:PL:GQ 1/1:248,63,0:99 chr1 175105880 . G A 83 . DP=18;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,14,1;MQ=58;FQ=-72 GT:PL:GQ 1/1:116,45,0:87 chr1 175105942 . G A 222 . DP=40;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,31,8;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 175113578 . T C 222 . DP=65;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,38,24;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 175116252 . C G 45.1 . DP=7;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:78,21,0:39 chr1 175129947 . ttcttcttgt tt 18.5 . INDEL;DP=10;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=36;FQ=21.5;PV4=1,1,0.19,1 GT:PL:GQ 0/1:56,0,87:59 chr1 175130204 . G A 28 . DP=3;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:60,9,0:16 chr1 175299301 . T C 174 . DP=46;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,35,10;MQ=60;FQ=-162 GT:PL:GQ 1/1:207,135,0:99 chr1 175324518 . GCA G 214 . INDEL;DP=13;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,11,2;MQ=58;FQ=-73.5 GT:PL:GQ 1/1:255,39,0:75 chr1 175324651 . A G 222 . DP=84;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,36,44;MQ=59;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr1 175335412 . A C 25 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:57,9,0:15 chr1 175336530 . T C 138 . DP=19;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,17;MQ=59;FQ=-84 GT:PL:GQ 1/1:171,57,0:99 chr1 175348723 . C T 101 . DP=18;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,14,4;MQ=59;FQ=-81 GT:PL:GQ 1/1:134,54,0:99 chr1 175355128 . C G 222 . DP=34;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,25,9;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 175355391 . A G 219 . DP=29;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,20;MQ=60;FQ=-114 GT:PL:GQ 1/1:252,87,0:99 chr1 175360690 . C T 215 . DP=18;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,16;MQ=60;FQ=-78 GT:PL:GQ 1/1:248,51,0:99 chr1 175365663 . G A 179 . DP=74;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,48,23;MQ=59;FQ=-241 GT:PL:GQ 1/1:212,214,0:99 chr1 175375334 . C T 150 . DP=10;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:183,27,0:51 chr1 175375469 . C A 222 . DP=81;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,57,22;MQ=60;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr1 175375683 . T C 222 . DP=80;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,35,40;MQ=60;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr1 175375802 . T C 222 . DP=95;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,54,36;MQ=60;FQ=-272;PV4=1,0.29,1,1 GT:PL:GQ 1/1:255,245,0:99 chr1 175916267 . T C 179 . DP=27;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,21,6;MQ=58;FQ=-108 GT:PL:GQ 1/1:212,81,0:99 chr1 175937540 . C T 222 . DP=69;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,52,14;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr1 175951347 . T A 66.1 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:99,18,0:33 chr1 176012807 . G A 169 . DP=10;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:202,27,0:51 chr1 176102974 . T C 223 . DP=16;VDB=0.0400;AF1=1;AC1=2;DP4=1,0,8,7;MQ=60;FQ=-34;PV4=1,0.2,1,0.16 GT:PL:GQ 1/1:255,7,0:12 chr1 176129276 . G A 158 . DP=38;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,27,11;MQ=56;FQ=-141 GT:PL:GQ 1/1:191,114,0:99 chr1 176153658 . T C 222 . DP=13;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,8,5;MQ=60;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr1 176659463 . C T 136 . DP=77;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,19,22,20;MQ=60;FQ=139;PV4=0.49,9.1e-20,0.19,0.36 GT:PL:GQ 0/1:166,0,255:99 chr1 176664842 . C A 79 . DP=36;VDB=0.0271;AF1=0.5;AC1=1;DP4=15,8,8,5;MQ=60;FQ=82;PV4=1,1.6e-08,1,1 GT:PL:GQ 0/1:109,0,255:99 chr1 176681165 . Atgtgtgtgtgtgtgtgtgtgtgtgtgtgt Atgtgtgtgtgtgtgtgtgtgtgtgtgt,ATGTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 69.7 . INDEL;DP=20;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,1,8;MQ=57;FQ=-49.5 GT:PL:GQ 1/1:255,160,145,137,0,128:27 chr1 176734756 . C T 159 . DP=23;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,19,4;MQ=60;FQ=-96 GT:PL:GQ 1/1:192,69,0:99 chr1 176759202 . A G 5.46 . DP=14;VDB=0.0099;AF1=0.4999;AC1=1;DP4=1,7,0,5;MQ=60;FQ=7.8;PV4=1,2.6e-06,1,1 GT:PL:GQ 0/1:34,0,170:34 chr1 176762955 . T G 6.79 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:37,6,0:7 chr1 176769358 . T C 44 . DP=24;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,13,1,10;MQ=60;FQ=47;PV4=0.46,1.6e-11,1,0.18 GT:PL:GQ 0/1:74,0,169:77 chr1 176809368 . C T 225 . DP=73;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,18,17,25;MQ=60;FQ=225;PV4=1,0.038,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 176845528 . C T 211 . DP=26;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,25,1;MQ=59;FQ=-105 GT:PL:GQ 1/1:244,78,0:99 chr1 176857347 . A G 128 . DP=18;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,2,14;MQ=60;FQ=-75 GT:PL:GQ 1/1:161,48,0:93 chr1 176863836 . G C 222 . DP=48;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,32,11;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 176863867 . T C 222 . DP=47;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,31,16;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 176992553 . A G 197 . DP=36;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,9,6,9;MQ=60;FQ=200;PV4=0.5,1,1,0.19 GT:PL:GQ 0/1:227,0,255:99 chr1 176992676 . C T 63 . DP=15;VDB=0.0392;AF1=0.5;AC1=1;DP4=0,9,3,3;MQ=60;FQ=66;PV4=0.044,2.6e-05,1,0.2 GT:PL:GQ 0/1:93,0,151:96 chr1 177199323 . C T 169 . DP=27;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,5,21;MQ=60;FQ=-105 GT:PL:GQ 1/1:202,78,0:99 chr1 177247854 . C G 94 . DP=48;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,23,3,13;MQ=60;FQ=97;PV4=1,2.6e-09,1,0.14 GT:PL:GQ 0/1:124,0,255:99 chr1 177898799 . C T 13 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr1 177899121 . G C 3.01 . DP=10;VDB=0.0095;AF1=0.4997;AC1=1;DP4=1,5,0,3;MQ=60;FQ=4.77;PV4=1,0.00017,1,1 GT:PL:GQ 0/1:30,0,152:28 chr1 177901713 . T C 225 . DP=67;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,22,19,9;MQ=59;FQ=225;PV4=0.048,1,1,0.27 GT:PL:GQ 0/1:255,0,255:99 chr1 177901741 . A G 125 . DP=65;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,20,15,13;MQ=60;FQ=128;PV4=0.61,1.9e-22,1,1 GT:PL:GQ 0/1:155,0,255:99 chr1 177902388 . G A 63 . DP=63;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,16,21,4;MQ=60;FQ=66;PV4=0.027,6.1e-26,1,1 GT:PL:GQ 0/1:93,0,255:96 chr1 177902753 . G C 143 . DP=115;VDB=0.0399;AF1=0.5;AC1=1;DP4=41,30,21,21;MQ=60;FQ=146;PV4=0.44,1.1e-39,0.35,1 GT:PL:GQ 0/1:173,0,255:99 chr1 177915474 . A C 159 . DP=27;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,9;MQ=60;FQ=-102 GT:PL:GQ 1/1:192,75,0:99 chr1 177929940 . G A 94 . DP=34;VDB=0.0190;AF1=0.5;AC1=1;DP4=16,3,12,2;MQ=60;FQ=97;PV4=1,6.9e-10,1,0.17 GT:PL:GQ 0/1:124,0,255:99 chr1 177929987 . T C 225 . DP=59;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,9,21,6;MQ=60;FQ=225;PV4=0.76,1,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr1 177930642 . G A 77 . DP=11;VDB=0.0081;AF1=0.5;AC1=1;DP4=6,0,5,0;MQ=60;FQ=79.9;PV4=1,1,1,1 GT:PL:GQ 0/1:107,0,123:99 chr1 177930894 . C T 186 . DP=36;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,14,3,12;MQ=60;FQ=189;PV4=0.7,0.0083,1,0.26 GT:PL:GQ 0/1:216,0,255:99 chr1 177933443 . G A 113 . DP=37;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,17,6,13;MQ=60;FQ=116;PV4=0.09,4.6e-13,1,0.25 GT:PL:GQ 0/1:143,0,198:99 chr1 177935203 . A G 11.3 . DP=22;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,14,3,3;MQ=60;FQ=14.2;PV4=0.053,2.1e-11,1,1 GT:PL:GQ 0/1:41,0,211:43 chr1 178483231 . G A 222 . DP=100;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,54,42;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 178484834 . A G 69 . DP=4;VDB=0.0041;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:101,9,0:16 chr1 178489978 . T G 179 . DP=35;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,27;MQ=60;FQ=-129 GT:PL:GQ 1/1:212,102,0:99 chr1 178492447 . T A 104 . DP=4;VDB=0.0095;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:136,12,0:21 chr1 178514622 . C T 137 . DP=80;VDB=0.0392;AF1=1;AC1=2;DP4=1,0,34,42;MQ=59;FQ=-223;PV4=0.45,6.4e-07,0.44,0.23 GT:PL:GQ 1/1:170,196,0:99 chr1 179023879 . T G 34.3 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:67,15,0:27 chr1 179040930 . T C 114 . DP=18;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,16,2;MQ=59;FQ=-81 GT:PL:GQ 1/1:147,54,0:99 chr1 179041011 . A G 189 . DP=71;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,42,24;MQ=59;FQ=-226 GT:PL:GQ 1/1:222,199,0:99 chr1 179051300 . T C 64.1 . DP=8;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-48 GT:PL:GQ 1/1:97,21,0:39 chr1 179052006 . G T 222 . DP=30;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,13,16;MQ=59;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 179054692 . T G 160 . DP=48;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,24,22;MQ=58;FQ=-165 GT:PL:GQ 1/1:193,138,0:99 chr1 179067071 . C A 222 . DP=33;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,11,22;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 179087934 . T C 222 . DP=63;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,10,45;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 179089213 . C T 116 . DP=8;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:149,24,0:45 chr1 179089475 . C G 222 . DP=26;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,23;MQ=59;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 179089491 . A C 107 . DP=18;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,17;MQ=59;FQ=-81 GT:PL:GQ 1/1:140,54,0:99 chr1 179089518 . C G 155 . DP=11;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,11;MQ=58;FQ=-60 GT:PL:GQ 1/1:188,33,0:63 chr1 179292442 . G A 205 . DP=16;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,1,8,3;MQ=60;FQ=65;PV4=1,1,1,1 GT:PL:GQ 0/1:235,0,92:95 chr1 179304892 . T C 51.5 . DP=4;VDB=0.0095;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:84,12,0:21 chr1 179310262 . C T 80 . DP=118;VDB=0.0345;AF1=0.5;AC1=1;DP4=32,29,34,20;MQ=60;FQ=83;PV4=0.27,2.6e-53,1,1 GT:PL:GQ 0/1:110,0,255:99 chr1 179312102 . T C 222 . DP=124;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,43,76;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 179312249 . att at 83.7 . INDEL;DP=5;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:124,15,0:27 chr1 179317895 . Atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt Atgtgtgtgtgtgtgtgtgtgtgtgtgtgt 14.4 . INDEL;DP=2;VDB=0.0178;AF1=1;AC1=2;DP4=0,0,2,0;MQ=29;FQ=-40.5 GT:PL:GQ 1/1:53,6,0:10 chr1 179319580 . T C 222 . DP=123;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,26,97;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 179320665 . A G 211 . DP=90;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,11,76;MQ=59;FQ=-282 GT:PL:GQ 1/1:244,255,0:99 chr1 179339334 . G A 14.9 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:46,6,0:10 chr1 179347832 . T C,A 210 . DP=44;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,29,14;MQ=59;FQ=-153 GT:PL:GQ 1/1:243,126,0,240,108,237:99 chr1 179354304 . A G 104 . DP=6;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:137,18,0:33 chr1 179364391 . A G 189 . DP=15;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,1,12;MQ=60;FQ=-66 GT:PL:GQ 1/1:222,39,0:75 chr1 179380472 . gtttttttt gttttttt 43.5 . INDEL;DP=26;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,2,19;MQ=60;FQ=-97.5 GT:PL:GQ 1/1:84,63,0:99 chr1 179401564 . Ctttttttttttt Cttttttttttt,Cttttttttt 30.5 . INDEL;DP=78;VDB=0.0380;AF1=1;AC1=2;DP4=1,1,22,30;MQ=60;FQ=-163;PV4=1,0.36,1,0.26 GT:PL:GQ 1/1:71,128,0,67,131,63:99 chr1 179437827 . G A 105 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:138,15,0:27 chr1 179452194 . C T 7.59 . DP=3;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr1 179452522 . G C 111 . DP=6;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:144,18,0:33 chr1 179462149 . A G 36 . DP=9;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:69,24,0:45 chr1 179497359 . T C 176 . DP=17;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,16,0;MQ=60;FQ=-75 GT:PL:GQ 1/1:209,48,0:93 chr1 179503806 . G A 37.5 . DP=11;VDB=0.0081;AF1=1;AC1=2;DP4=1,0,10,0;MQ=56;FQ=-31;PV4=1,0.00012,1,0.29 GT:PL:GQ 1/1:68,4,0:7 chr1 179504025 . aaagaagaagaagaa aaagaagaagaa 214 . INDEL;DP=39;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,9;MQ=58;FQ=-146 GT:PL:GQ 1/1:255,111,0:99 chr1 179504043 . C G 222 . DP=48;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,27,14;MQ=58;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 179504130 . G A 171 . DP=49;VDB=0.0392;AF1=1;AC1=2;DP4=1,1,14,31;MQ=59;FQ=-112;PV4=0.54,0.0098,0.38,0.17 GT:PL:GQ 1/1:204,85,0:99 chr1 179520254 . C G 62 . DP=30;VDB=0.0244;AF1=0.5;AC1=1;DP4=9,6,11,2;MQ=60;FQ=65;PV4=0.22,1.5e-11,1,0.35 GT:PL:GQ 0/1:92,0,255:95 chr1 179520506 . G A 104 . DP=31;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,9,3,11;MQ=60;FQ=107;PV4=0.26,4.5e-12,1,1 GT:PL:GQ 0/1:134,0,255:99 chr1 179521932 . G T 133 . DP=47;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,19,5,18;MQ=60;FQ=136;PV4=1,3e-18,1,0.0012 GT:PL:GQ 0/1:163,0,255:99 chr1 179544898 . T C 171 . DP=23;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,13;MQ=59;FQ=-84 GT:PL:GQ 1/1:204,57,0:99 chr1 179561645 . A C 69 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:101,9,0:16 chr1 179561683 . A T 7.77 . DP=10;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:39,9,0:11 chr1 179562740 . G C 160 . DP=109;VDB=0.0399;AF1=0.5;AC1=1;DP4=28,27,28,24;MQ=60;FQ=163;PV4=0.85,4.9e-26,0.15,0.32 GT:PL:GQ 0/1:190,0,255:99 chr1 179604864 . C T 222 . DP=93;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,53,40;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 179609589 . G T 118 . DP=96;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,27,21,26;MQ=60;FQ=121;PV4=1,3.5e-33,1,0.18 GT:PL:GQ 0/1:148,0,255:99 chr1 179620253 . G A 211 . DP=25;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,8,2,15;MQ=59;FQ=98;PV4=1,1,0.25,1 GT:PL:GQ 0/1:241,0,125:99 chr1 179816816 . T A 17.1 . DP=27;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,18,0,9;MQ=59;FQ=20.1;PV4=1,1.4e-13,0.081,0.33 GT:PL:GQ 0/1:47,0,179:50 chr1 179852074 . T C 195 . DP=47;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,22,4,15;MQ=60;FQ=198;PV4=1,0.5,1,1 GT:PL:GQ 0/1:225,0,255:99 chr1 179852552 . T G 47.5 . DP=4;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:80,12,0:21 chr1 179858333 . C T 33 . DP=10;VDB=0.0116;AF1=0.5;AC1=1;DP4=7,0,3,0;MQ=60;FQ=36;PV4=1,0.47,1,1 GT:PL:GQ 0/1:63,0,133:66 chr1 179858444 . G A 56 . DP=24;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,7,6,2;MQ=59;FQ=59;PV4=0.4,0.00056,1,0.25 GT:PL:GQ 0/1:86,0,255:89 chr1 179876900 . A T 70 . DP=27;VDB=0.0271;AF1=0.5;AC1=1;DP4=12,0,13,1;MQ=53;FQ=73;PV4=1,3.4e-07,0.49,0.3 GT:PL:GQ 0/1:100,0,150:99 chr1 179876988 . C G 136 . DP=34;VDB=0.0216;AF1=0.5;AC1=1;DP4=7,8,8,11;MQ=56;FQ=139;PV4=1,2.6e-11,0.44,0.3 GT:PL:GQ 0/1:166,0,255:99 chr1 179887125 . G A 222 . DP=112;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,55,54;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 179972337 . A C 157 . DP=84;VDB=0.0345;AF1=0.5;AC1=1;DP4=29,15,25,13;MQ=60;FQ=160;PV4=1,3.5e-25,0.14,0.19 GT:PL:GQ 0/1:187,0,255:99 chr1 179983665 . G A 51 . DP=35;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,13,2,18;MQ=60;FQ=54;PV4=1,1e-18,1,1 GT:PL:GQ 0/1:81,0,193:84 chr1 179985156 . C T 176 . DP=32;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,15,1,15;MQ=60;FQ=147;PV4=1,0.38,1,0.41 GT:PL:GQ 0/1:206,0,174:99 chr1 179989742 . G C 225 . DP=66;VDB=0.0373;AF1=0.5;AC1=1;DP4=14,14,18,15;MQ=60;FQ=225;PV4=0.8,0.4,1,0.27 GT:PL:GQ 0/1:255,0,255:99 chr1 180000542 . G T 113 . DP=90;VDB=0.0343;AF1=0.5;AC1=1;DP4=24,31,12,19;MQ=60;FQ=116;PV4=0.82,6.7e-22,0.092,0.072 GT:PL:GQ 0/1:143,0,255:99 chr1 180003277 . C A 36 . DP=32;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,14,0,15;MQ=60;FQ=39;PV4=1,5.5e-13,1,1 GT:PL:GQ 0/1:66,0,169:69 chr1 180010702 . T C 46 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=52;FQ=-36 GT:PL:GQ 1/1:78,9,0:16 chr1 180022343 . T G 72 . DP=41;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,21,1,16;MQ=60;FQ=75;PV4=1,7.1e-14,1,1 GT:PL:GQ 0/1:102,0,244:99 chr1 180022813 . A G 47 . DP=4;VDB=0.0040;AF1=0.5008;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-4.12;PV4=1,0.33,1,0.42 GT:PL:GQ 0/1:77,0,25:28 chr1 180034431 . CTT C 217 . INDEL;DP=10;VDB=0.0322;AF1=0.5001;AC1=1;DP4=0,1,2,6;MQ=57;FQ=-3.84;PV4=1,1.1e-07,0.37,0.24 GT:PL:GQ 0/1:255,0,33:36 chr1 180049840 . C T 118 . DP=14;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,6,1,5;MQ=60;FQ=121;PV4=1,1,1,1 GT:PL:GQ 0/1:148,0,157:99 chr1 180059736 . gacatacctac gac 37.5 . INDEL;DP=5;VDB=0.0001;AF1=0.5;AC1=1;DP4=1,0,4,0;MQ=37;FQ=10.8;PV4=1,1.5e-05,0,1 GT:PL:GQ 0/1:75,0,45:48 chr1 180059811 . A C 125 . DP=35;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,2,16,4;MQ=54;FQ=128;PV4=1,2.2e-13,0.031,0.35 GT:PL:GQ 0/1:155,0,206:99 chr1 180067914 . G A 101 . DP=7;VDB=0.0004;AF1=0.5064;AC1=1;DP4=1,0,6,0;MQ=60;FQ=-11.3;PV4=1,1,1,1 GT:PL:GQ 0/1:131,0,16:19 chr1 180067988 . G A 225 . DP=17;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,0,9,4;MQ=60;FQ=54;PV4=0.52,0.051,1,0.042 GT:PL:GQ 0/1:255,0,81:84 chr1 180080115 . T G 14.2 . DP=13;VDB=0.0118;AF1=0.5;AC1=1;DP4=6,1,4,1;MQ=60;FQ=17.1;PV4=1,3e-08,1,1 GT:PL:GQ 0/1:44,0,163:47 chr1 180080290 . T A 168 . DP=51;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,8,11,13;MQ=60;FQ=171;PV4=0.15,6.1e-17,0.15,1 GT:PL:GQ 0/1:198,0,255:99 chr1 180144485 . G A 32 . DP=17;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,10,2,4;MQ=59;FQ=35;PV4=0.51,1.6e-08,1,1 GT:PL:GQ 0/1:62,0,190:65 chr1 180145088 . A G 222 . DP=21;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,5,14;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr1 180148012 . G C 141 . DP=45;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,12,10,16;MQ=59;FQ=144;PV4=1,1.5e-17,1,1 GT:PL:GQ 0/1:171,0,255:99 chr1 180155382 . AGG AG 24.2 . INDEL;DP=2;VDB=0.0171;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:63,6,0:10 chr1 180158927 . C G 57 . DP=18;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,7,0,9;MQ=60;FQ=60;PV4=1,2.5e-05,1,0.16 GT:PL:GQ 0/1:87,0,131:90 chr1 180180669 . A G 173 . DP=19;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,5,3,7;MQ=60;FQ=167;PV4=0.65,1,1,1 GT:PL:GQ 0/1:203,0,195:99 chr1 180240752 . C T 55 . DP=7;VDB=0.0143;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=49.4;PV4=1,1,1,1 GT:PL:GQ 0/1:85,0,77:79 chr1 180243524 . A G 222 . DP=100;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,29,68;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 180257692 . A C 126 . DP=11;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,5,6;MQ=60;FQ=-60 GT:PL:GQ 1/1:159,33,0:63 chr1 180283659 . T C 28.8 . DP=2;VDB=0.0178;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:60,6,0:10 chr1 180794474 . A G 79 . DP=84;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,38,4,33;MQ=59;FQ=82;PV4=0.75,3.8e-23,1,0.18 GT:PL:GQ 0/1:109,0,255:99 chr1 180885430 . T C 219 . DP=73;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,39,28;MQ=60;FQ=-229 GT:PL:GQ 1/1:252,202,0:99 chr1 180897521 . C T 189 . DP=69;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,40,25;MQ=59;FQ=-223 GT:PL:GQ 1/1:222,196,0:99 chr1 180913456 . G A 48 . DP=23;VDB=0.0164;AF1=0.5;AC1=1;DP4=9,5,7,2;MQ=60;FQ=51;PV4=0.66,7.3e-11,1,1 GT:PL:GQ 0/1:78,0,255:81 chr1 180913597 . A G 186 . DP=106;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,49,47;MQ=60;FQ=-282 GT:PL:GQ 1/1:219,255,0:99 chr1 180953853 . A G 225 . DP=54;VDB=0.0164;AF1=0.5;AC1=1;DP4=18,16,7,13;MQ=60;FQ=225;PV4=0.26,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 180991665 . C G 112 . DP=55;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,9,15,9;MQ=60;FQ=115;PV4=0.58,1.1e-14,0.13,0.28 GT:PL:GQ 0/1:142,0,255:99 chr1 181024528 . G A 103 . DP=51;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,24,3,17;MQ=60;FQ=106;PV4=1,1.8e-13,1,1 GT:PL:GQ 0/1:133,0,255:99 chr1 181058272 . G T 22.8 . DP=2;VDB=0.0110;AF1=1;AC1=2;DP4=0,0,1,1;MQ=47;FQ=-33 GT:PL:GQ 1/1:54,6,0:10 chr1 181058643 . A G 24.8 . DP=2;VDB=0.0125;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:56,6,0:10 chr1 181684605 . A G 108 . DP=15;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,3,10;MQ=60;FQ=-66 GT:PL:GQ 1/1:141,39,0:75 chr1 181686216 . T C 120 . DP=36;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,31,2;MQ=60;FQ=-126 GT:PL:GQ 1/1:153,99,0:99 chr1 181690156 . A T 59 . DP=9;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,2,1,6;MQ=60;FQ=19.1;PV4=1,0.00098,1,1 GT:PL:GQ 0/1:89,0,46:49 chr1 181719679 . C T 222 . DP=53;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,14,38;MQ=59;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 181727273 . G A 14.2 . DP=7;VDB=0.0133;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=17.1;PV4=1,0.0022,1,0.18 GT:PL:GQ 0/1:44,0,95:47 chr1 181752923 . AAGCTTAGCTTAG AAGCTTAG 217 . INDEL;DP=24;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,6,3,9;MQ=58;FQ=217;PV4=1,0.00031,0.11,0.2 GT:PL:GQ 0/1:255,0,255:99 chr1 181759657 . G A 225 . DP=46;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,8,12,13;MQ=59;FQ=225;PV4=0.55,0.16,1,0.33 GT:PL:GQ 0/1:255,0,255:99 chr1 182026813 . G C 183 . DP=135;VDB=0.0399;AF1=0.5;AC1=1;DP4=31,34,31,37;MQ=60;FQ=186;PV4=0.86,1.6e-37,1,0.18 GT:PL:GQ 0/1:213,0,255:99 chr1 182027022 . C T 94 . DP=89;VDB=0.0400;AF1=0.5;AC1=1;DP4=19,21,20,24;MQ=60;FQ=97;PV4=1,2e-33,0.17,0.39 GT:PL:GQ 0/1:124,0,255:99 chr1 182355046 . A G 225 . DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,18,13,17;MQ=60;FQ=225;PV4=1,0.26,1,0.13 GT:PL:GQ 0/1:255,0,255:99 chr1 182356399 . A G 164 . DP=57;VDB=0.0298;AF1=0.5;AC1=1;DP4=18,12,16,11;MQ=59;FQ=167;PV4=1,8.2e-22,0.031,1 GT:PL:GQ 0/1:194,0,255:99 chr1 182369078 . G A 198 . DP=57;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,30,25;MQ=60;FQ=-193 GT:PL:GQ 1/1:231,166,0:99 chr1 182369233 . A G 137 . DP=95;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,25,19,24;MQ=60;FQ=140;PV4=0.54,1.3e-29,1,0.42 GT:PL:GQ 0/1:167,0,255:99 chr1 182429295 . ctgtgtgtgtgtgtgtgtgtgtgtgt ctgtgtgtgtgtgtgtgtgtgtgt 125 . INDEL;DP=12;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:165,15,0:27 chr1 182429728 . T C 93 . DP=22;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,4;MQ=59;FQ=-90 GT:PL:GQ 1/1:126,63,0:99 chr1 182491107 . A C 198 . DP=11;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:231,33,0:63 chr1 182496829 . A G 222 . DP=114;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,33,74;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 182501933 . C A 222 . DP=122;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,64,56;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 182502033 . G T 219 . DP=52;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,10,40;MQ=60;FQ=-178 GT:PL:GQ 1/1:252,151,0:99 chr1 182509269 . G A 108 . DP=17;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,16,1;MQ=60;FQ=-78 GT:PL:GQ 1/1:141,51,0:99 chr1 182509292 . A G 129 . DP=29;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,26,2;MQ=60;FQ=-111 GT:PL:GQ 1/1:162,84,0:99 chr1 182509617 . C A 9.49 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:41,9,0:12 chr1 182544815 . T C 21 . DP=16;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,9,0,5;MQ=60;FQ=24;PV4=1,9.1e-08,1,0.1 GT:PL:GQ 0/1:51,0,156:54 chr1 182549019 . A G 222 . DP=32;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,25,6;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 182551337 . A C 222 . DP=88;VDB=0.0345;AF1=1;AC1=2;DP4=1,0,56,29;MQ=59;FQ=-266;PV4=1,1,1,0.24 GT:PL:GQ 1/1:255,239,0:99 chr1 182554557 . C T 187 . DP=127;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,64,58;MQ=60;FQ=-282 GT:PL:GQ 1/1:220,255,0:99 chr1 182569626 . T C 222 . DP=36;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,25;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 182573227 . T C 185 . DP=68;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,49,15;MQ=60;FQ=-220 GT:PL:GQ 1/1:218,193,0:99 chr1 182778367 . G A 209 . DP=45;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,10,33;MQ=60;FQ=-156 GT:PL:GQ 1/1:242,129,0:99 chr1 182784022 . T C 141 . DP=67;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,26,8,23;MQ=60;FQ=144;PV4=1,6.2e-21,1,0.38 GT:PL:GQ 0/1:171,0,255:99 chr1 182850727 . T C 147 . DP=22;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,6,15;MQ=59;FQ=-90 GT:PL:GQ 1/1:180,63,0:99 chr1 182854017 . G A 37 . DP=16;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,5,0,10;MQ=59;FQ=40;PV4=0.37,9e-11,0.23,0.25 GT:PL:GQ 0/1:67,0,139:70 chr1 182993025 . C T 103 . DP=66;VDB=0.0373;AF1=0.5;AC1=1;DP4=24,14,16,10;MQ=60;FQ=106;PV4=1,4.3e-22,1,0.034 GT:PL:GQ 0/1:133,0,255:99 chr1 183072590 . T C 225 . DP=70;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,26,9,20;MQ=60;FQ=225;PV4=1,0.33,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 183077296 . A AG 62.5 . INDEL;DP=11;VDB=0.0014;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=60;FQ=56;PV4=1,1,1,0.2 GT:PL:GQ 0/1:100,0,91:93 chr1 183077615 . C T 107 . DP=12;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,5,0,7;MQ=60;FQ=89;PV4=1,0.21,1,0.27 GT:PL:GQ 0/1:137,0,116:99 chr1 183077618 . C T 26 . DP=12;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,6,0,5;MQ=60;FQ=29;PV4=1,1.1e-09,1,0.21 GT:PL:GQ 0/1:56,0,135:59 chr1 183079509 . C T 39 . DP=22;VDB=0.0081;AF1=0.5;AC1=1;DP4=7,0,14,0;MQ=60;FQ=42;PV4=1,4.6e-10,1,0.37 GT:PL:GQ 0/1:69,0,118:72 chr1 183085696 . A G 220 . DP=62;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,6,25,3;MQ=60;FQ=222;PV4=0.47,0.31,0.15,1 GT:PL:GQ 0/1:250,0,255:99 chr1 183085755 . A G 225 . DP=96;VDB=0.0365;AF1=0.5;AC1=1;DP4=25,25,21,21;MQ=59;FQ=225;PV4=1,1,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr1 183086757 . A C 159 . DP=54;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,15,12,14;MQ=60;FQ=162;PV4=1,5.7e-18,1,1 GT:PL:GQ 0/1:189,0,255:99 chr1 183093875 . T C 225 . DP=44;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,5,10,17;MQ=60;FQ=216;PV4=0.062,1,1,1 GT:PL:GQ 0/1:255,0,243:99 chr1 183094547 . T C 164 . DP=66;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,8,30,12;MQ=60;FQ=167;PV4=0.78,2.7e-26,0.23,0.27 GT:PL:GQ 0/1:194,0,255:99 chr1 183094802 . G A 9.49 . DP=4;VDB=0.0027;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:41,9,0:12 chr1 183095185 . TAAAAAAAAAAAAAA TAAAAAAAAAAAA,TAAAAAAAAAAA 15.8 . INDEL;DP=33;VDB=0.0345;AF1=1;AC1=2;DP4=8,0,15,3;MQ=59;FQ=-42.5;PV4=0.53,1,0.26,1 GT:PL:GQ 1/1:55,8,0,65,26,51:13 chr1 183095234 . A G 111 . DP=74;VDB=0.0345;AF1=0.5;AC1=1;DP4=32,12,16,11;MQ=60;FQ=114;PV4=0.3,8.1e-17,0.1,1 GT:PL:GQ 0/1:141,0,255:99 chr1 183095477 . G A 96 . DP=20;VDB=0.0140;AF1=0.5;AC1=1;DP4=2,8,3,6;MQ=60;FQ=99;PV4=0.63,1.1e-08,1,0.41 GT:PL:GQ 0/1:126,0,207:99 chr1 183096634 . G A 4.13 . DP=5;VDB=0.0194;AF1=0.4998;AC1=1;DP4=0,2,0,2;MQ=60;FQ=6.2;PV4=1,0.013,1,1 GT:PL:GQ 0/1:32,0,60:31 chr1 183097956 . GTTA GTTATTA 217 . INDEL;DP=17;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,5,3,7;MQ=57;FQ=132;PV4=0.51,1,0.16,0.088 GT:PL:GQ 0/1:255,0,167:99 chr1 183098001 . A G 74 . DP=8;VDB=0.0070;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=69.2;PV4=1,1,1,1 GT:PL:GQ 0/1:104,0,97:99 chr1 183099701 . G A 100 . DP=20;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,13,2,4;MQ=60;FQ=103;PV4=0.2,0.21,1,1 GT:PL:GQ 0/1:130,0,209:99 chr1 183100555 . T C 45 . DP=48;VDB=0.0019;AF1=0.5;AC1=1;DP4=2,28,0,17;MQ=60;FQ=48;PV4=0.53,6.2e-18,0.094,0.28 GT:PL:GQ 0/1:75,0,245:78 chr1 183101471 . G A 30 . DP=11;VDB=0.0003;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=60;FQ=33;PV4=1,4.7e-06,1,0.016 GT:PL:GQ 0/1:60,0,116:63 chr1 183101686 . G A 91 . DP=85;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,30,7,31;MQ=60;FQ=94;PV4=0.3,8.9e-41,1,1 GT:PL:GQ 0/1:121,0,255:99 chr1 183104013 . G A 117 . DP=40;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,16,4,16;MQ=60;FQ=120;PV4=1,1.8e-10,1,0.26 GT:PL:GQ 0/1:147,0,238:99 chr1 183105534 . T C 225 . DP=78;VDB=0.0322;AF1=0.5;AC1=1;DP4=27,4,34,8;MQ=60;FQ=225;PV4=0.54,1,0.2,1 GT:PL:GQ 0/1:255,0,255:99 chr1 183105705 . G A 97 . DP=53;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,19,1,31;MQ=60;FQ=100;PV4=1,2.7e-16,1,0.44 GT:PL:GQ 0/1:127,0,192:99 chr1 183106739 . G A 25 . DP=10;VDB=0.0004;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=28;PV4=1,0.00019,1,0.1 GT:PL:GQ 0/1:55,0,95:58 chr1 183155482 . C A 6.98 . DP=11;VDB=0.0219;AF1=0.4999;AC1=1;DP4=5,0,3,0;MQ=57;FQ=9.53;PV4=1,0.00036,0.11,0.0061 GT:PL:GQ 0/1:36,0,106:37 chr1 183155700 . C A 95 . DP=23;VDB=0.0140;AF1=0.5;AC1=1;DP4=2,8,4,9;MQ=57;FQ=98;PV4=0.66,6.8e-08,0.056,0.48 GT:PL:GQ 0/1:125,0,191:99 chr1 183155715 . CT C 125 . INDEL;DP=18;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,8,2,7;MQ=57;FQ=105;PV4=0.47,0.043,0.088,0.33 GT:PL:GQ 0/1:163,0,140:99 chr1 183176970 . GTTTTTTTTTTTTTTT GTTTTTTTTTTTTTTTTTTT 4.19 . INDEL;DP=24;VDB=0.0244;AF1=0.5939;AC1=1;DP4=6,1,5,0;MQ=60;FQ=-29.5;PV4=1,1,1,1 GT:PL:GQ 0/1:39,0,5:11 chr1 183177218 . A G 18.1 . DP=7;VDB=0.0082;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=20.8;PV4=1,0.0091,1,1 GT:PL:GQ 0/1:48,0,60:51 chr1 183273751 . C T 45 . DP=13;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,2,7,1;MQ=60;FQ=48;PV4=0.51,9.2e-07,1,1 GT:PL:GQ 0/1:75,0,125:78 chr1 183486859 . G A 225 . DP=126;VDB=0.0365;AF1=0.5;AC1=1;DP4=39,31,29,27;MQ=60;FQ=225;PV4=0.72,0.14,1,0.4 GT:PL:GQ 0/1:255,0,255:99 chr1 183525452 . T G 96 . DP=73;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,31,3,28;MQ=59;FQ=99;PV4=0.13,5.8e-26,0.051,0.46 GT:PL:GQ 0/1:126,0,255:99 chr1 183602076 . T A 5.46 . DP=12;VDB=0.0014;AF1=0.4999;AC1=1;DP4=6,0,4,0;MQ=60;FQ=7.8;PV4=1,0.0018,1,1 GT:PL:GQ 0/1:34,0,120:34 chr1 183617266 . C G 196 . DP=113;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,50,58;MQ=60;FQ=-282 GT:PL:GQ 1/1:229,255,0:99 chr1 183711483 . C T 76 . DP=11;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:109,30,0:57 chr1 183849739 . G C 98.3 . DP=6;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:131,15,0:27 chr1 183867085 . C T 141 . DP=13;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,11;MQ=58;FQ=-60 GT:PL:GQ 1/1:174,33,0:63 chr1 183871637 . G A 178 . DP=24;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,17,6;MQ=59;FQ=-96 GT:PL:GQ 1/1:211,69,0:99 chr1 183873898 . A G 108 . DP=7;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:141,18,0:33 chr1 183876287 . T C 159 . DP=13;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:192,33,0:63 chr1 183895178 . G A 222 . DP=58;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,38,11;MQ=59;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 183942950 . C T 80 . DP=17;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,1,15;MQ=60;FQ=-75 GT:PL:GQ 1/1:113,48,0:93 chr1 183944444 . C T 24.5 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:57,12,0:21 chr1 184020945 . G A 199 . DP=26;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,13,8;MQ=59;FQ=-90 GT:PL:GQ 1/1:232,63,0:99 chr1 184023529 . A C 201 . DP=85;VDB=0.0271;AF1=1;AC1=2;DP4=1,0,61,18;MQ=60;FQ=-232;PV4=1,8.2e-06,0.46,0.34 GT:PL:GQ 1/1:234,205,0:99 chr1 184042058 . T C 120 . DP=19;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,16;MQ=60;FQ=-84 GT:PL:GQ 1/1:153,57,0:99 chr1 184662181 . C T 63 . DP=60;VDB=0.0244;AF1=0.5;AC1=1;DP4=27,5,22,4;MQ=60;FQ=66;PV4=1,2e-28,0.14,0.49 GT:PL:GQ 0/1:93,0,255:96 chr1 184663537 . A C 99 . DP=41;VDB=0.0216;AF1=0.5;AC1=1;DP4=5,15,7,11;MQ=59;FQ=102;PV4=0.49,1.6e-13,0.066,1 GT:PL:GQ 0/1:129,0,255:99 chr1 184663581 . T C 92 . DP=22;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,10,3,8;MQ=60;FQ=95;PV4=0.59,1.2e-09,1,0.46 GT:PL:GQ 0/1:122,0,178:99 chr1 184675814 . G A 225 . DP=158;VDB=0.0400;AF1=0.5;AC1=1;DP4=39,38,44,32;MQ=60;FQ=225;PV4=0.42,6.4e-06,0.16,0.28 GT:PL:GQ 0/1:255,0,255:99 chr1 184677464 . G A 174 . DP=52;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,12,14,19;MQ=60;FQ=177;PV4=0.35,5.1e-18,1,1 GT:PL:GQ 0/1:204,0,223:99 chr1 184681081 . A G 30.5 . DP=4;VDB=0.0143;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:63,12,0:21 chr1 184695571 . C T 3.01 . DP=24;VDB=0.0025;AF1=0.4997;AC1=1;DP4=1,15,0,8;MQ=59;FQ=4.77;PV4=1,7.1e-12,1,1 GT:PL:GQ 0/1:30,0,207:28 chr1 184706212 . GTT GT 217 . INDEL;DP=42;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,17,9,12;MQ=59;FQ=217;PV4=0.18,4.6e-11,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr1 184760001 . T C 29 . DP=13;VDB=0.0118;AF1=0.5;AC1=1;DP4=6,0,7,0;MQ=60;FQ=32;PV4=1,8.2e-09,1,0.036 GT:PL:GQ 0/1:59,0,119:62 chr1 184764067 . C G 140 . DP=99;VDB=0.0244;AF1=0.5;AC1=1;DP4=29,15,37,18;MQ=60;FQ=143;PV4=1,1.5e-37,1,1 GT:PL:GQ 0/1:170,0,255:99 chr1 184777079 . G A 85 . DP=21;VDB=0.0025;AF1=0.5;AC1=1;DP4=12,0,7,0;MQ=60;FQ=88;PV4=1,0.051,1,0.25 GT:PL:GQ 0/1:115,0,170:99 chr1 184777101 . G A 147 . DP=41;VDB=0.0033;AF1=0.5;AC1=1;DP4=20,0,20,0;MQ=59;FQ=149;PV4=1,0.16,1,0.34 GT:PL:GQ 0/1:177,0,182:99 chr1 184777177 . C A 198 . DP=120;VDB=0.0400;AF1=0.5;AC1=1;DP4=37,18,39,23;MQ=60;FQ=201;PV4=0.7,2.5e-18,1,0.18 GT:PL:GQ 0/1:228,0,255:99 chr1 184777467 . A T 8.64 . DP=12;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,7,0,3;MQ=60;FQ=11.3;PV4=1,0.0009,1,1 GT:PL:GQ 0/1:38,0,139:40 chr1 184868251 . G A 63 . DP=33;VDB=0.0118;AF1=0.5;AC1=1;DP4=13,1,18,0;MQ=60;FQ=66;PV4=0.44,1.8e-14,1,0.48 GT:PL:GQ 0/1:93,0,198:96 chr1 185094277 . G T 35.3 . DP=6;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:68,15,0:27 chr1 185119794 . C T 57 . DP=3;VDB=0.0089;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:89,9,0:16 chr1 185135745 . A G 201 . DP=26;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,10,5,6;MQ=60;FQ=204;PV4=0.69,1,1,1 GT:PL:GQ 0/1:231,0,255:99 chr1 185143721 . A G 121 . DP=64;VDB=0.0298;AF1=0.5;AC1=1;DP4=19,20,15,8;MQ=60;FQ=124;PV4=0.29,3.4e-17,1,1 GT:PL:GQ 0/1:151,0,255:99 chr1 185153545 . G GT 125 . INDEL;DP=22;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,10,2,8;MQ=59;FQ=128;PV4=1,1,0.14,1 GT:PL:GQ 0/1:163,0,178:99 chr1 185171869 . A G 225 . DP=64;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,18,11,26;MQ=60;FQ=225;PV4=0.79,1,0.2,1 GT:PL:GQ 0/1:255,0,255:99 chr1 185240474 . A G 126 . DP=35;VDB=0.0190;AF1=0.5;AC1=1;DP4=7,10,6,12;MQ=60;FQ=129;PV4=0.73,1.2e-11,1,1 GT:PL:GQ 0/1:156,0,255:99 chr1 185259731 . A G 18.1 . DP=9;VDB=0.0008;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=57;FQ=21;PV4=1,2.3e-05,0.2,1 GT:PL:GQ 0/1:48,0,94:51 chr1 185267114 . A G 106 . DP=15;VDB=0.0004;AF1=0.5;AC1=1;DP4=7,0,7,0;MQ=60;FQ=107;PV4=1,0.37,1,0.4 GT:PL:GQ 0/1:136,0,138:99 chr1 185984517 . T C 222 . DP=79;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,21,56;MQ=59;FQ=-259 GT:PL:GQ 1/1:255,232,0:99 chr1 186106861 . C T 218 . DP=91;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,44,43;MQ=59;FQ=-263;PV4=1,1.1e-08,1,0.25 GT:PL:GQ 1/1:251,236,0:99 chr1 186265948 . T A 222 . DP=54;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,46,6;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 186274133 . C T 40.8 . DP=2;VDB=0.0173;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:72,6,0:10 chr1 186275760 . G A 116 . DP=95;VDB=0.0400;AF1=0.5;AC1=1;DP4=23,18,28,26;MQ=60;FQ=119;PV4=0.84,5.9e-45,0.19,0.24 GT:PL:GQ 0/1:146,0,255:99 chr1 186277088 . G C 222 . DP=79;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,32,41;MQ=56;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr1 186295021 . A G 63 . DP=60;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,28,3,22;MQ=59;FQ=66;PV4=0.33,1.3e-23,0.37,1 GT:PL:GQ 0/1:93,0,210:96 chr1 186304109 . C T 42 . DP=5;VDB=0.0070;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=24;PV4=1,0.33,1,1 GT:PL:GQ 0/1:72,0,51:54 chr1 186304298 . C T 108 . DP=51;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,12,8,16;MQ=60;FQ=111;PV4=0.25,9.9e-21,1,0.23 GT:PL:GQ 0/1:138,0,255:99 chr1 186313249 . A G 222 . DP=79;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,9,68;MQ=59;FQ=-259 GT:PL:GQ 1/1:255,232,0:99 chr1 186313293 . G A 89 . DP=24;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,14,0,8;MQ=60;FQ=92;PV4=1,0.12,1,0.39 GT:PL:GQ 0/1:119,0,172:99 chr1 186316488 . C T 159 . DP=179;VDB=0.0399;AF1=0.5;AC1=1;DP4=57,40,54,25;MQ=60;FQ=162;PV4=0.21,1.6e-60,1,0.43 GT:PL:GQ 0/1:189,0,255:99 chr1 186326757 . TAAAAA TAAAA 94 . INDEL;DP=45;VDB=0.0345;AF1=0.5718;AC1=1;DP4=1,7,7,27;MQ=59;FQ=-28.5;PV4=1,0.08,0.32,1 GT:PL:GQ 0/1:131,0,6:9 chr1 186329869 . C G 222 . DP=33;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,26,5;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 186330643 . T C 28 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:60,9,0:16 chr1 186357523 . T C 82 . DP=10;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:115,30,0:57 chr1 186367619 . C T 164 . DP=25;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,13,1,11;MQ=59;FQ=148;PV4=0.48,0.11,0.15,1 GT:PL:GQ 0/1:194,0,175:99 chr1 186413714 . G C 39 . DP=10;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,3,0,7;MQ=60;FQ=38.5;PV4=1,5.2e-05,1,1 GT:PL:GQ 0/1:69,0,68:68 chr1 186649221 . A G 33.5 . DP=4;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:66,12,0:21 chr1 186862419 . A G 7.8 . DP=3;VDB=0.0190;AF1=0.5003;AC1=1;DP4=0,1,0,2;MQ=60;FQ=3.27;PV4=1,0.089,1,1 GT:PL:GQ 0/1:37,0,28:32 chr1 186863385 . TAAA TA 208 . INDEL;DP=23;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,8,0,13;MQ=59;FQ=211;PV4=0.18,0.0058,0.2,0.36 GT:PL:GQ 0/1:246,0,255:99 chr1 186919732 . A T 16.4 . DP=9;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:49,15,0:25 chr1 186919993 . G A 222 . DP=38;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,3,34;MQ=59;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 186925194 . T C 171 . DP=16;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,15,0;MQ=57;FQ=-72 GT:PL:GQ 1/1:204,45,0:87 chr1 186925552 . T C 172 . DP=50;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,7,42;MQ=60;FQ=-175 GT:PL:GQ 1/1:205,148,0:99 chr1 186946638 . C T 20 . DP=8;VDB=0.0125;AF1=0.5;AC1=1;DP4=5,0,2,0;MQ=60;FQ=23;PV4=1,1,1,0.24 GT:PL:GQ 0/1:50,0,115:53 chr1 186946912 . G A 134 . DP=64;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,9,54;MQ=60;FQ=-217 GT:PL:GQ 1/1:167,190,0:99 chr1 187610852 . A T 222 . DP=78;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,35,40;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr1 192128183 . G A 164 . DP=12;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:197,33,0:63 chr1 192545099 . G A 107 . DP=25;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,2,21;MQ=60;FQ=-96 GT:PL:GQ 1/1:140,69,0:99 chr1 193051685 . G A 104 . DP=26;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,24,1;MQ=58;FQ=-102 GT:PL:GQ 1/1:137,75,0:99 chr1 193054154 . G A 225 . DP=23;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,4,10,7;MQ=59;FQ=103;PV4=0.37,0.21,1,0.091 GT:PL:GQ 0/1:255,0,130:99 chr1 193074651 . T A 162 . DP=7;VDB=0.0325;AF1=1;AC1=2;DP4=0,0,4,3;MQ=57;FQ=-48 GT:PL:GQ 1/1:195,21,0:39 chr1 193090865 . C A 222 . DP=40;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,22,16;MQ=59;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 193094375 . T C 166 . DP=36;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,6,29;MQ=60;FQ=-132 GT:PL:GQ 1/1:199,105,0:99 chr1 193111228 . TGAGAGAGAGAGAGAGAGAG TGAGAGAGAGAGAGAGAG 6.55 . INDEL;DP=17;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,11,0,2;MQ=60;FQ=9.05;PV4=1,0.0031,1,1 GT:PL:GQ 0/1:43,0,247:44 chr1 193205272 . T A 124 . DP=30;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,24,3;MQ=59;FQ=-108 GT:PL:GQ 1/1:157,81,0:99 chr1 196227526 . A G 222 . DP=38;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,19;MQ=59;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 196242764 . T G 32.5 . DP=4;VDB=0.0059;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:65,12,0:21 chr1 196251522 . T C 176 . DP=10;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,2,7;MQ=60;FQ=-54 GT:PL:GQ 1/1:209,27,0:51 chr1 196254970 . C T 222 . DP=47;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,44;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 196311513 . G A 14.2 . DP=5;VDB=0.0089;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=16.8;PV4=1,0.0014,1,1 GT:PL:GQ 0/1:44,0,55:46 chr1 196398619 . T C 99.1 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:132,18,0:33 chr1 196398974 . T A 8.61 . DP=3;VDB=0.0050;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:40,9,0:12 chr1 196874356 . G T 180 . DP=98;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,61,32;MQ=59;FQ=-282 GT:PL:GQ 1/1:213,255,0:99 chr1 197030201 . T C 186 . DP=32;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,29;MQ=60;FQ=-114 GT:PL:GQ 1/1:219,87,0:99 chr1 197031021 . C T 222 . DP=58;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,22,34;MQ=59;FQ=-176;PV4=1,1,1,0.23 GT:PL:GQ 1/1:255,149,0:99 chr1 197053373 . G A 101 . DP=13;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:134,39,0:75 chr1 197055925 . T C 208 . DP=26;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,16,9;MQ=60;FQ=-102 GT:PL:GQ 1/1:241,75,0:99 chr1 197059892 . A G 22.5 . DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:55,12,0:21 chr1 197059928 . A G 118 . DP=27;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,25,1;MQ=60;FQ=-105 GT:PL:GQ 1/1:151,78,0:99 chr1 197063352 . C T 44.3 . DP=5;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:77,15,0:27 chr1 197070442 . G T 162 . DP=23;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,13,9;MQ=60;FQ=-56;PV4=1,1.4e-06,1,1 GT:PL:GQ 1/1:195,29,0:55 chr1 197070697 . T C 135 . DP=47;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,31,12;MQ=59;FQ=-156 GT:PL:GQ 1/1:168,129,0:99 chr1 197070707 . G A 222 . DP=49;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,32,16;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 197070815 . T C 222 . DP=67;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,38,29;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr1 197070901 . A G 222 . DP=76;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,42,28;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr1 197072420 . T C 136 . DP=84;VDB=0.0244;AF1=1;AC1=2;DP4=1,0,66,15;MQ=59;FQ=-245;PV4=1,1.4e-08,1,1 GT:PL:GQ 1/1:169,218,0:99 chr1 197073932 . T C 179 . DP=57;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,31;MQ=60;FQ=-187 GT:PL:GQ 1/1:212,160,0:99 chr1 197091537 . A T 222 . DP=69;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,50,16;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr1 197091808 . T C 214 . DP=15;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:247,45,0:87 chr1 197109042 . C T 27.8 . DP=2;VDB=0.0076;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:59,6,0:10 chr1 197112533 . G A 222 . DP=90;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,47,40;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 197113073 . G A 182 . DP=27;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,3;MQ=60;FQ=-105 GT:PL:GQ 1/1:215,78,0:99 chr1 197141243 . A C 126 . DP=9;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:159,27,0:51 chr1 197316408 . T G 57 . DP=37;VDB=0.0011;AF1=0.5;AC1=1;DP4=21,0,13,1;MQ=60;FQ=60;PV4=0.4,8e-11,1,0.12 GT:PL:GQ 0/1:87,0,170:90 chr1 197316435 . T C 92 . DP=57;VDB=0.0081;AF1=0.5;AC1=1;DP4=28,3,22,3;MQ=60;FQ=95;PV4=1,3.3e-32,1,0.24 GT:PL:GQ 0/1:122,0,255:99 chr1 197325908 . T G 225 . DP=80;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,5,37,9;MQ=59;FQ=225;PV4=0.77,0.056,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 197390368 . A G 222 . DP=74;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,48;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr1 197398086 . A G 222 . DP=52;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,41,10;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 197407942 . A G 26 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:58,9,0:16 chr1 197446702 . G T 91 . DP=85;VDB=0.0400;AF1=0.5;AC1=1;DP4=30,17,21,13;MQ=60;FQ=94;PV4=1,1e-32,1,1 GT:PL:GQ 0/1:121,0,255:99 chr1 197447037 . T C 93 . DP=62;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,24,7,19;MQ=60;FQ=96;PV4=0.78,1.1e-22,0.12,1 GT:PL:GQ 0/1:123,0,255:99 chr1 197480927 . C T 18.1 . DP=52;VDB=0.0244;AF1=0.5;AC1=1;DP4=22,8,15,4;MQ=60;FQ=21;PV4=0.74,4.5e-27,1,1 GT:PL:GQ 0/1:48,0,255:51 chr1 197480986 . C T 74 . DP=64;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,22,14,12;MQ=60;FQ=77;PV4=0.45,1.7e-31,1,0.32 GT:PL:GQ 0/1:104,0,255:99 chr1 197482167 . C G 83.3 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:116,15,0:27 chr1 197510025 . G T 60.1 . DP=6;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:93,18,0:33 chr1 197510299 . G A 56 . DP=3;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:88,9,0:16 chr1 197515777 . A T 107 . DP=21;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,3,8,0;MQ=60;FQ=110;PV4=0.26,0.31,1,1 GT:PL:GQ 0/1:137,0,252:99 chr1 197515981 . T C 153 . DP=14;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,7,2,5;MQ=60;FQ=97;PV4=0.46,1,1,1 GT:PL:GQ 0/1:183,0,124:99 chr1 197576307 . AT ATT 97.7 . INDEL;DP=11;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:138,15,0:27 chr1 197741951 . C A 3.41 . DP=15;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:32,6,0:4 chr1 197742171 . C T 22 . DP=6;VDB=0.0182;AF1=0.5;AC1=1;DP4=0,4,0,2;MQ=60;FQ=25;PV4=1,1,1,0.36 GT:PL:GQ 0/1:52,0,101:55 chr1 197874949 . T C 203 . DP=61;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,43,17;MQ=60;FQ=-208 GT:PL:GQ 1/1:236,181,0:99 chr1 197890422 . C G 222 . DP=31;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,25,5;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 198225478 . G A 21 . DP=35;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,10,7,2;MQ=60;FQ=24;PV4=0.45,1.7e-10,1,1 GT:PL:GQ 0/1:51,0,255:54 chr1 198288709 . A G 125 . DP=27;VDB=0.0164;AF1=0.5;AC1=1;DP4=3,12,0,11;MQ=60;FQ=128;PV4=0.24,0.41,1,0.3 GT:PL:GQ 0/1:155,0,255:99 chr1 198711170 . C A 3.01 . DP=21;VDB=0.0392;AF1=0.4997;AC1=1;DP4=4,4,0,4;MQ=58;FQ=4.77;PV4=0.21,0.014,0.083,1 GT:PL:GQ 0/1:30,0,164:28 chr1 200014762 . A G 65 . DP=28;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,7,2,15;MQ=60;FQ=68;PV4=0.17,1.7e-13,1,1 GT:PL:GQ 0/1:95,0,219:98 chr1 200014766 . G T 76 . DP=27;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,6,2,14;MQ=60;FQ=79;PV4=0.16,4.1e-14,1,1 GT:PL:GQ 0/1:106,0,210:99 chr1 200080463 . C T 27 . DP=22;VDB=0.0219;AF1=0.5;AC1=1;DP4=4,3,2,3;MQ=60;FQ=30;PV4=1,0.024,1,1 GT:PL:GQ 0/1:57,0,137:60 chr1 200089872 . C T 147 . DP=43;VDB=0.0190;AF1=0.5;AC1=1;DP4=22,1,19,0;MQ=59;FQ=150;PV4=1,1,1,0.1 GT:PL:GQ 0/1:177,0,214:99 chr1 200090120 . G A 71 . DP=39;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,15,1,18;MQ=59;FQ=74;PV4=0.34,1.4e-16,1,0.29 GT:PL:GQ 0/1:101,0,255:99 chr1 200182654 . T C 94 . DP=8;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:127,24,0:45 chr1 200182683 . C A 10.4 . DP=11;VDB=0.0120;AF1=0.5;AC1=1;DP4=6,2,1,1;MQ=60;FQ=13.2;PV4=1,0.49,1,1 GT:PL:GQ 0/1:40,0,176:42 chr1 200311868 . C G 222 . DP=27;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,12,15;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 200311910 . T A 118 . DP=27;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,4,21;MQ=60;FQ=-102 GT:PL:GQ 1/1:151,75,0:99 chr1 200534248 . C T 148 . DP=96;VDB=0.0399;AF1=0.5;AC1=1;DP4=32,18,38,8;MQ=60;FQ=151;PV4=0.065,4.7e-22,0.15,0.44 GT:PL:GQ 0/1:178,0,255:99 chr1 200544650 . Tacacacacacacacacacacaca Tacacacacacacacacacaca 80.5 . INDEL;DP=22;VDB=0.0019;AF1=0.5;AC1=1;DP4=16,0,6,0;MQ=60;FQ=83.5;PV4=1,0.0087,1,0.21 GT:PL:GQ 0/1:118,0,255:99 chr1 200549590 . T C 22 . DP=4;VDB=0.0173;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=24.5;PV4=1,0.26,1,1 GT:PL:GQ 0/1:52,0,61:54 chr1 200558363 . T C 141 . DP=68;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,12,23,11;MQ=60;FQ=144;PV4=1,1.4e-24,1,0.3 GT:PL:GQ 0/1:171,0,255:99 chr1 200569392 . C A 222 . DP=101;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,80,16;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 200574959 . T C 51 . DP=13;VDB=0.0006;AF1=0.5;AC1=1;DP4=5,1,6,1;MQ=60;FQ=54;PV4=1,2.9e-05,1,0.24 GT:PL:GQ 0/1:81,0,139:84 chr1 200575744 . CTAAATAAATA CTAAATA 217 . INDEL;DP=28;VDB=0.0033;AF1=0.5;AC1=1;DP4=13,0,15,0;MQ=53;FQ=217;PV4=1,3e-30,0.011,0.21 GT:PL:GQ 0/1:255,0,255:99 chr1 200575794 . A G 203 . DP=72;VDB=0.0400;AF1=0.5;AC1=1;DP4=35,3,30,3;MQ=56;FQ=206;PV4=1,0.4,0.00052,1 GT:PL:GQ 0/1:233,0,255:99 chr1 200578093 . G A 125 . DP=12;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,2,10;MQ=60;FQ=-63 GT:PL:GQ 1/1:158,36,0:69 chr1 200583380 . T G 80 . DP=35;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,2,13,2;MQ=60;FQ=83;PV4=1,2.4e-15,1,1 GT:PL:GQ 0/1:110,0,237:99 chr1 200594240 . G A 115 . DP=37;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,2,33;MQ=59;FQ=-132 GT:PL:GQ 1/1:148,105,0:99 chr1 200618238 . T C 207 . DP=38;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,23,13;MQ=60;FQ=-135 GT:PL:GQ 1/1:240,108,0:99 chr1 200619530 . T C 214 . DP=20;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,18,1;MQ=60;FQ=-84 GT:PL:GQ 1/1:247,57,0:99 chr1 200816658 . T C 27.5 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:60,12,0:21 chr1 200824108 . C T 32 . DP=10;VDB=0.0116;AF1=0.5;AC1=1;DP4=0,7,0,3;MQ=60;FQ=35;PV4=1,0.055,1,0.0028 GT:PL:GQ 0/1:62,0,146:65 chr1 200843305 . G T 77 . DP=10;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,2,1,6;MQ=60;FQ=15.1;PV4=1,0.0018,1,1 GT:PL:GQ 0/1:107,0,42:45 chr1 200867492 . C G 53 . DP=15;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,3,5,3;MQ=60;FQ=56;PV4=1,0.0031,1,1 GT:PL:GQ 0/1:83,0,124:86 chr1 200877786 . T C 202 . DP=20;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,17,1;MQ=60;FQ=-81 GT:PL:GQ 1/1:235,54,0:99 chr1 200880978 . C T 53 . DP=4;VDB=0.0249;AF1=1;AC1=2;DP4=0,0,0,3;MQ=34;FQ=-36 GT:PL:GQ 1/1:85,9,0:16 chr1 200881172 . C A 145 . DP=23;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,16,7;MQ=34;FQ=-96 GT:PL:GQ 1/1:178,69,0:99 chr1 200943793 . CAGGAAGGA CAGGA 214 . INDEL;DP=24;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,20,4;MQ=54;FQ=-107 GT:PL:GQ 1/1:255,72,0:99 chr1 200944840 . T G 9.31 . DP=2;VDB=0.0174;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr1 200952336 . C G 8.76 . DP=5;VDB=0.0082;AF1=0.5162;AC1=1;DP4=1,0,0,3;MQ=60;FQ=-15.1;PV4=0.25,0.16,1,0.13 GT:PL:GQ 0/1:38,0,12:16 chr1 200956288 . A G 171 . DP=48;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,16,9,16;MQ=60;FQ=174;PV4=0.76,7.3e-13,1,1 GT:PL:GQ 0/1:201,0,255:99 chr1 200957691 . G C 58 . DP=24;VDB=0.0244;AF1=0.5003;AC1=1;DP4=0,3,1,19;MQ=60;FQ=4.13;PV4=1,6.8e-08,1,1 GT:PL:GQ 0/1:88,0,29:32 chr1 200959052 . T G 168 . DP=57;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,8,15,10;MQ=60;FQ=171;PV4=0.39,1.7e-12,1,1 GT:PL:GQ 0/1:198,0,255:99 chr1 200959302 . G A 160 . DP=58;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,15,12,13;MQ=59;FQ=163;PV4=1,2.7e-16,1,1 GT:PL:GQ 0/1:190,0,255:99 chr1 200960886 . C T 89 . DP=27;VDB=0.0359;AF1=0.5;AC1=1;DP4=6,8,2,9;MQ=60;FQ=92;PV4=0.23,6.4e-08,1,0.41 GT:PL:GQ 0/1:119,0,255:99 chr1 200960898 . A T 52 . DP=23;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,8,2,6;MQ=59;FQ=55;PV4=0.65,2e-09,1,1 GT:PL:GQ 0/1:82,0,255:85 chr1 200960915 . T C 87 . DP=19;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,7,1,5;MQ=60;FQ=90;PV4=0.33,1,1,1 GT:PL:GQ 0/1:117,0,252:99 chr1 200965601 . G A 133 . DP=16;VDB=0.0380;AF1=0.5;AC1=1;DP4=0,5,1,10;MQ=60;FQ=70;PV4=1,0.16,1,1 GT:PL:GQ 0/1:163,0,97:99 chr1 201009897 . T C 19.6 . DP=4;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:52,12,0:21 chr1 201013387 . C T 22 . DP=14;VDB=0.0066;AF1=0.5;AC1=1;DP4=7,0,5,0;MQ=60;FQ=25;PV4=1,2.6e-08,1,1 GT:PL:GQ 0/1:52,0,140:55 chr1 201016296 . G A 222 . DP=45;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,24,20;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 201017805 . A C 12.3 . DP=30;VDB=0.0004;AF1=0.5;AC1=1;DP4=6,7,0,7;MQ=60;FQ=15.1;PV4=0.051,1.9e-06,1,1 GT:PL:GQ 0/1:42,0,225:44 chr1 201020105 . A G 222 . DP=25;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,9;MQ=59;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 201042618 . G A 4.75 . DP=6;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:35,9,0:8 chr1 201043627 . C A 175 . DP=96;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,23,21,21;MQ=59;FQ=178;PV4=0.68,6.2e-28,1,1 GT:PL:GQ 0/1:205,0,255:99 chr1 201044748 . A G 222 . DP=43;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,14,24;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 201060865 . G A 24 . DP=29;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,14,1,6;MQ=60;FQ=27;PV4=0.38,4.1e-06,1,1 GT:PL:GQ 0/1:54,0,255:57 chr1 201079458 . T A 91 . DP=32;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,30;MQ=60;FQ=-117 GT:PL:GQ 1/1:124,90,0:99 chr1 201081283 . ACCCCCCCCC ACCCCCCCC,ACCCCCCC 7.34 . INDEL;DP=17;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,15,1;MQ=60;FQ=-79.5 GT:PL:GQ 1/1:47,45,0,39,26,36:48 chr1 201112981 . A G 222 . DP=36;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,8;MQ=59;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 201113118 . A G 144 . DP=34;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,6,28;MQ=59;FQ=-129 GT:PL:GQ 1/1:177,102,0:99 chr1 201115822 . A G 123 . DP=49;VDB=0.0398;AF1=0.5;AC1=1;DP4=10,9,17,11;MQ=60;FQ=126;PV4=0.76,2.6e-20,1,0.097 GT:PL:GQ 0/1:153,0,255:99 chr1 201116018 . C G 132 . DP=13;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,2,11;MQ=60;FQ=-66 GT:PL:GQ 1/1:165,39,0:75 chr1 201122784 . C T 83 . DP=16;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,15,1;MQ=60;FQ=-75 GT:PL:GQ 1/1:116,48,0:93 chr1 201122947 . T G 222 . DP=63;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,44;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 201163191 . G T 53 . DP=14;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,13,1;MQ=60;FQ=-69 GT:PL:GQ 1/1:86,42,0:81 chr1 201166281 . C T 222 . DP=44;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,25,13;MQ=59;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 201166383 . G A 222 . DP=50;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,23;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 201166435 . T C 222 . DP=50;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,26;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 201170772 . A G 107 . DP=14;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:140,39,0:75 chr1 201170824 . C G 181 . DP=28;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,23,5;MQ=60;FQ=-111 GT:PL:GQ 1/1:214,84,0:99 chr1 201171007 . T G 71 . DP=9;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:104,27,0:51 chr1 201173104 . C T 156 . DP=29;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,10,1,12;MQ=60;FQ=159;PV4=0.33,0.28,1,1 GT:PL:GQ 0/1:186,0,252:99 chr1 201175227 . C A 59 . DP=37;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,11,9,3;MQ=60;FQ=62;PV4=0.28,8.7e-10,1,1 GT:PL:GQ 0/1:89,0,255:92 chr1 201175274 . A G 80 . DP=33;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,7,5,8;MQ=60;FQ=83;PV4=0.46,3.9e-08,1,1 GT:PL:GQ 0/1:110,0,255:99 chr1 201175715 . G T 185 . DP=64;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,19,16,19;MQ=60;FQ=188;PV4=0.31,1.8e-19,0.19,1 GT:PL:GQ 0/1:215,0,255:99 chr1 201176018 . A G 69 . DP=29;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,10,4,5;MQ=60;FQ=72;PV4=1,1.9e-05,1,1 GT:PL:GQ 0/1:99,0,255:99 chr1 201176108 . G A 49 . DP=28;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,11,6,5;MQ=60;FQ=52;PV4=0.44,2.7e-15,1,1 GT:PL:GQ 0/1:79,0,255:82 chr1 201176711 . G T 91 . DP=37;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,9,6,11;MQ=59;FQ=94;PV4=0.5,1.3e-14,0.16,0.044 GT:PL:GQ 0/1:121,0,255:99 chr1 201176968 . A G 155 . DP=36;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,4,11,12;MQ=60;FQ=154;PV4=0.48,8.4e-11,1,1 GT:PL:GQ 0/1:185,0,184:99 chr1 201177246 . T C 225 . DP=74;VDB=0.0393;AF1=0.5;AC1=1;DP4=12,23,21,15;MQ=59;FQ=225;PV4=0.058,1,0.081,0.36 GT:PL:GQ 0/1:255,0,255:99 chr1 201177278 . C T 225 . DP=82;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,25,23,19;MQ=59;FQ=225;PV4=0.04,0.06,0.095,1 GT:PL:GQ 0/1:255,0,255:99 chr1 201177538 . G T 183 . DP=59;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,9,19,14;MQ=60;FQ=186;PV4=0.79,3.6e-12,1,1 GT:PL:GQ 0/1:213,0,255:99 chr1 201178125 . G A 144 . DP=73;VDB=0.0393;AF1=0.5;AC1=1;DP4=11,17,23,21;MQ=60;FQ=147;PV4=0.34,7.4e-30,1,0.31 GT:PL:GQ 0/1:174,0,255:99 chr1 201178470 . G A 121 . DP=72;VDB=0.0398;AF1=0.5;AC1=1;DP4=15,19,17,17;MQ=60;FQ=124;PV4=0.81,1.5e-25,1,1 GT:PL:GQ 0/1:151,0,255:99 chr1 201178788 . A G 37 . DP=155;VDB=0.0271;AF1=0.5;AC1=1;DP4=49,51,37,17;MQ=54;FQ=40;PV4=0.027,6.4e-52,4.5e-09,1 GT:PL:GQ 0/1:67,0,255:70 chr1 201178819 . G A 53 . DP=141;VDB=0.0398;AF1=0.5;AC1=1;DP4=51,51,19,19;MQ=54;FQ=56;PV4=1,4.6e-36,1,0.15 GT:PL:GQ 0/1:83,0,255:86 chr1 201178866 . A G 22 . DP=72;VDB=0.0140;AF1=0.5;AC1=1;DP4=15,33,8,14;MQ=54;FQ=25;PV4=0.79,3.7e-35,1,1 GT:PL:GQ 0/1:52,0,255:55 chr1 201178904 . A G 56 . DP=36;VDB=0.0008;AF1=0.5;AC1=1;DP4=6,15,4,9;MQ=56;FQ=59;PV4=1,5.8e-12,0.24,0.46 GT:PL:GQ 0/1:86,0,255:89 chr1 201181217 . A G 190 . DP=98;VDB=0.0398;AF1=0.5;AC1=1;DP4=22,18,19,35;MQ=60;FQ=193;PV4=0.062,1.5e-14,1,0.3 GT:PL:GQ 0/1:220,0,255:99 chr1 201181223 . A G 222 . DP=93;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,42,50;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 201181920 . G T 65 . DP=56;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,13,8,11;MQ=59;FQ=68;PV4=0.77,4e-15,0.13,1 GT:PL:GQ 0/1:95,0,255:98 chr1 201182609 . G A 134 . DP=117;VDB=0.0399;AF1=0.5;AC1=1;DP4=40,19,44,11;MQ=60;FQ=137;PV4=0.2,7.6e-40,1,1 GT:PL:GQ 0/1:164,0,255:99 chr1 201182779 . A G 225 . DP=51;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,26,4,19;MQ=60;FQ=204;PV4=0.39,1,1,0.091 GT:PL:GQ 0/1:255,0,231:99 chr1 201183363 . C T 108 . DP=51;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,11,15,4;MQ=59;FQ=111;PV4=0.34,2.1e-10,0.37,0.35 GT:PL:GQ 0/1:138,0,255:99 chr1 201183402 . T C 112 . DP=55;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,16,15,8;MQ=59;FQ=115;PV4=0.27,2.5e-18,0.2,1 GT:PL:GQ 0/1:142,0,255:99 chr1 201184097 . G A 98 . DP=40;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,11,6,14;MQ=59;FQ=101;PV4=0.51,7.6e-15,1,0.46 GT:PL:GQ 0/1:128,0,255:99 chr1 201184275 . C T 11.3 . DP=10;VDB=0.0189;AF1=0.5;AC1=1;DP4=2,5,1,2;MQ=60;FQ=14.2;PV4=1,0.00052,1,1 GT:PL:GQ 0/1:41,0,165:43 chr1 201187764 . T C 222 . DP=39;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,22,17;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 201187828 . T C 222 . DP=37;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,12,25;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 201187954 . C T 20.6 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:53,12,0:21 chr1 201190732 . G A 90 . DP=41;VDB=0.0118;AF1=0.5;AC1=1;DP4=9,15,5,9;MQ=59;FQ=93;PV4=1,3e-11,1,1 GT:PL:GQ 0/1:120,0,255:99 chr1 201195119 . C T 222 . DP=63;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,32,28;MQ=60;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr1 201197358 . G C 8.64 . DP=6;VDB=0.0149;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=11.3;PV4=1,2.6e-07,1,1 GT:PL:GQ 0/1:38,0,87:40 chr1 201197471 . T C 225 . DP=67;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,8,23,9;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 201282167 . C G 30 . DP=9;VDB=0.0003;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=33;PV4=1,3.4e-06,1,1 GT:PL:GQ 0/1:60,0,91:63 chr1 201285759 . A G 163 . DP=20;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,7;MQ=60;FQ=-84 GT:PL:GQ 1/1:196,57,0:99 chr1 201285909 . A G 3.98 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr1 201286628 . C G 182 . DP=31;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,26,5;MQ=58;FQ=-120 GT:PL:GQ 1/1:215,93,0:99 chr1 201286678 . C T 225 . DP=45;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,6,11,9;MQ=59;FQ=225;PV4=0.22,0.066,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 201286771 . C T 56 . DP=39;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,18,2,9;MQ=60;FQ=59;PV4=0.45,6.4e-06,1,1 GT:PL:GQ 0/1:86,0,255:89 chr1 201288898 . A C 222 . DP=40;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,30,9;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 201288955 . G A 85 . DP=56;VDB=0.0384;AF1=0.5;AC1=1;DP4=14,21,9,9;MQ=60;FQ=88;PV4=0.56,1.5e-22,1,0.27 GT:PL:GQ 0/1:115,0,255:99 chr1 201290968 . T G 222 . DP=24;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,19,4;MQ=59;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr1 201291066 . C T 184 . DP=97;VDB=0.0365;AF1=0.5;AC1=1;DP4=34,14,28,18;MQ=59;FQ=187;PV4=0.39,1.1e-21,1,0.41 GT:PL:GQ 0/1:214,0,255:99 chr1 201291283 . C T 143 . DP=28;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,13,1,13;MQ=60;FQ=133;PV4=1,0.017,1,1 GT:PL:GQ 0/1:173,0,160:99 chr1 201292110 . T C 184 . DP=25;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,20,5;MQ=59;FQ=-102 GT:PL:GQ 1/1:217,75,0:99 chr1 201293512 . TGGG TGG 65.5 . INDEL;DP=15;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,2,7,0;MQ=60;FQ=68.5;PV4=0.47,0.00068,1,1 GT:PL:GQ 0/1:103,0,153:99 chr1 201331554 . T G 225 . DP=53;VDB=0.0359;AF1=0.5;AC1=1;DP4=20,12,8,12;MQ=60;FQ=225;PV4=0.16,0.13,1,0.072 GT:PL:GQ 0/1:255,0,255:99 chr1 201331664 . C A 74 . DP=25;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,14,3,6;MQ=60;FQ=77;PV4=0.31,1.3e-10,1,0.084 GT:PL:GQ 0/1:104,0,241:99 chr1 201334382 . G A 158 . DP=52;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,18,7,17;MQ=60;FQ=161;PV4=0.77,8.4e-11,1,1 GT:PL:GQ 0/1:188,0,255:99 chr1 201335899 . C T 3.98 . DP=2;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr1 201336984 . C T 81 . DP=57;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,17,4,17;MQ=60;FQ=84;PV4=0.33,3.4e-13,1,1 GT:PL:GQ 0/1:111,0,255:99 chr1 201337050 . T C 25 . DP=18;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,7,1,8;MQ=60;FQ=28;PV4=1,3.8e-09,1,1 GT:PL:GQ 0/1:55,0,161:58 chr1 201338553 . T C 97 . DP=16;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,7,0,7;MQ=60;FQ=100;PV4=0.47,0.26,1,1 GT:PL:GQ 0/1:127,0,196:99 chr1 201338586 . A G 13.2 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:45,9,0:14 chr1 201338896 . T C 172 . DP=59;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,10,15,12;MQ=60;FQ=175;PV4=0.59,3.6e-16,1,1 GT:PL:GQ 0/1:202,0,255:99 chr1 201339043 . C T 158 . DP=16;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,5,1,10;MQ=60;FQ=70;PV4=1,0.27,1,1 GT:PL:GQ 0/1:188,0,97:99 chr1 201341175 . CAGAAGAGAAG CAGAAG 217 . INDEL;DP=40;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,3,18,2;MQ=56;FQ=217;PV4=0.65,2.3e-17,0.0023,1 GT:PL:GQ 0/1:255,0,255:99 chr1 201341341 . C T 153 . DP=39;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,20,2,15;MQ=58;FQ=156;PV4=1,0.089,0.095,0.21 GT:PL:GQ 0/1:183,0,239:99 chr1 201353827 . G C 50 . DP=7;VDB=0.0140;AF1=0.5032;AC1=1;DP4=0,1,4,2;MQ=60;FQ=-8.63;PV4=0.43,0.0075,1,0.31 GT:PL:GQ 0/1:80,0,19:22 chr1 201355522 . T C 68 . DP=25;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,5,8,3;MQ=60;FQ=71;PV4=0.68,5e-10,1,0.19 GT:PL:GQ 0/1:98,0,237:99 chr1 201355943 . C T 103 . DP=34;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,10,7,9;MQ=59;FQ=106;PV4=1,7.8e-09,0.071,1 GT:PL:GQ 0/1:133,0,255:99 chr1 201360281 . A G 73 . DP=61;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,15,8,26;MQ=60;FQ=76;PV4=1,8.4e-29,1,0.35 GT:PL:GQ 0/1:103,0,241:99 chr1 201386916 . C T 139 . DP=51;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,10,14,8;MQ=60;FQ=142;PV4=1,5.2e-21,0.13,1 GT:PL:GQ 0/1:169,0,255:99 chr1 201687451 . A G 142 . DP=44;VDB=0.0190;AF1=0.5;AC1=1;DP4=25,4,14,1;MQ=60;FQ=145;PV4=0.65,1,1,1 GT:PL:GQ 0/1:172,0,255:99 chr1 201754528 . T C 225 . DP=46;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,16,8,9;MQ=57;FQ=225;PV4=0.75,0.15,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 201755469 . C G 13.2 . DP=8;VDB=0.0223;AF1=0.5;AC1=1;DP4=4,1,2,1;MQ=60;FQ=16.1;PV4=1,0.00013,1,0.4 GT:PL:GQ 0/1:43,0,136:46 chr1 201763184 . T C 9.52 . DP=21;VDB=0.0244;AF1=0.5;AC1=1;DP4=12,2,6,1;MQ=60;FQ=12.3;PV4=1,4e-08,1,0.39 GT:PL:GQ 0/1:39,0,217:41 chr1 201772863 . TGGG TGGGG 201 . INDEL;DP=34;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,2,28;MQ=59;FQ=-125 GT:PL:GQ 1/1:242,90,0:99 chr1 201772891 . G A 146 . DP=12;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:179,33,0:63 chr1 201824390 . G A 214 . DP=46;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,35;MQ=60;FQ=-165 GT:PL:GQ 1/1:247,138,0:99 chr1 201837934 . Cgtgtgtgtgtgtgtgtgtgtgtg Cgtgtgtgtgtgtgtgtgtgtg 123 . INDEL;DP=21;VDB=0.0398;AF1=0.5;AC1=1;DP4=1,4,5,1;MQ=58;FQ=126;PV4=0.08,7.7e-06,0.19,0.43 GT:PL:GQ 0/1:161,0,191:99 chr1 201840059 . GTTATTTTATTTTA GTTATTTTA 192 . INDEL;DP=15;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,3,5;MQ=47;FQ=-58.5 GT:PL:GQ 1/1:233,24,0:45 chr1 201840464 . T C 101 . DP=21;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,2,19;MQ=60;FQ=-90 GT:PL:GQ 1/1:134,63,0:99 chr1 201844128 . G A 222 . DP=37;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,10,24;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 201860626 . A G 222 . DP=27;VDB=0.0400;AF1=1;AC1=2;DP4=1,0,4,20;MQ=59;FQ=-73;PV4=0.2,1,1,1 GT:PL:GQ 1/1:255,46,0:89 chr1 201861016 . C G 130 . DP=52;VDB=0.0244;AF1=1;AC1=2;DP4=1,0,2,47;MQ=60;FQ=-148;PV4=0.06,0.026,1,1 GT:PL:GQ 1/1:163,121,0:99 chr1 201865763 . A G,T 176 . DP=65;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,20,39;MQ=60;FQ=-202 GT:PL:GQ 1/1:209,175,0,209,157,206:99 chr1 201924749 . G C 79 . DP=34;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,17,1,13;MQ=60;FQ=82;PV4=0.45,5.9e-10,1,1 GT:PL:GQ 0/1:109,0,168:99 chr1 201966774 . T C 168 . DP=14;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,14;MQ=58;FQ=-69 GT:PL:GQ 1/1:201,42,0:81 chr1 201970562 . T C 207 . DP=61;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,37;MQ=60;FQ=-205 GT:PL:GQ 1/1:240,178,0:99 chr1 201981862 . T C 6.2 . DP=22;VDB=0.0219;AF1=0.4999;AC1=1;DP4=6,9,1,5;MQ=59;FQ=8.65;PV4=0.61,4.1e-09,0.058,0.3 GT:PL:GQ 0/1:35,0,255:36 chr1 202092046 . C T 38.8 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:70,6,0:10 chr1 202092360 . G A 216 . DP=45;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,31,9;MQ=60;FQ=-147 GT:PL:GQ 1/1:249,120,0:99 chr1 202092415 . A G 205 . DP=69;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,38,29;MQ=60;FQ=-229 GT:PL:GQ 1/1:238,202,0:99 chr1 202092580 . T C 222 . DP=70;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,30,38;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr1 202096815 . G A 222 . DP=49;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,43,6;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 202103802 . G A 8.44 . DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr1 202122783 . C A 16.1 . DP=8;VDB=0.0116;AF1=0.5;AC1=1;DP4=5,0,3,0;MQ=60;FQ=19.1;PV4=1,6.4e-05,1,0.44 GT:PL:GQ 0/1:46,0,119:49 chr1 202129826 . T C 74 . DP=36;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,7,7,6;MQ=60;FQ=77;PV4=0.48,2.3e-09,1,0.44 GT:PL:GQ 0/1:104,0,255:99 chr1 202129895 . G A 225 . DP=54;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,14,16,6;MQ=60;FQ=225;PV4=0.25,0.26,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 202130754 . T C 222 . DP=26;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,4,21;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 202155543 . A C 222 . DP=72;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,57;MQ=59;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr1 202156482 . G A 156 . DP=18;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,15,3;MQ=59;FQ=-81 GT:PL:GQ 1/1:189,54,0:99 chr1 202156628 . A C 156 . DP=15;VDB=0.0343;AF1=1;AC1=2;DP4=0,0,3,11;MQ=60;FQ=-69 GT:PL:GQ 1/1:189,42,0:81 chr1 202163516 . C A 222 . DP=23;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,17,5;MQ=59;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 202163621 . G A 151 . DP=78;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,22,22,11;MQ=59;FQ=154;PV4=0.17,2e-13,0.15,1 GT:PL:GQ 0/1:181,0,255:99 chr1 202183308 . C T 114 . DP=27;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,7,6,6;MQ=59;FQ=117;PV4=1,1.6e-06,1,0.47 GT:PL:GQ 0/1:144,0,255:99 chr1 202196931 . G A 222 . DP=38;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,31,6;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 202197161 . C T 174 . DP=25;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,8,2,10;MQ=60;FQ=177;PV4=0.38,0.14,1,1 GT:PL:GQ 0/1:204,0,255:99 chr1 202266547 . C T 111 . DP=39;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,7,17,3;MQ=59;FQ=114;PV4=0.14,4.3e-15,0.089,1 GT:PL:GQ 0/1:141,0,255:99 chr1 202266607 . C T 98 . DP=61;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,16,16,8;MQ=60;FQ=101;PV4=0.42,1.2e-26,0.12,1 GT:PL:GQ 0/1:128,0,255:99 chr1 202274936 . T C 175 . DP=19;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,5,6,4;MQ=59;FQ=161;PV4=0.66,1,0.18,0.46 GT:PL:GQ 0/1:205,0,188:99 chr1 202276494 . C T 130 . DP=100;VDB=0.0399;AF1=0.5;AC1=1;DP4=20,26,21,29;MQ=60;FQ=133;PV4=1,8.6e-36,1,1 GT:PL:GQ 0/1:160,0,255:99 chr1 202287206 . T C 115 . DP=45;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,17,8,12;MQ=59;FQ=118;PV4=0.16,9.1e-09,1,1 GT:PL:GQ 0/1:145,0,211:99 chr1 202287537 . G A 208 . DP=42;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,5,9,7;MQ=60;FQ=211;PV4=0.29,0.37,1,1 GT:PL:GQ 0/1:238,0,255:99 chr1 202287813 . T C 117 . DP=75;VDB=0.0365;AF1=0.5;AC1=1;DP4=28,17,10,16;MQ=60;FQ=120;PV4=0.083,1.7e-13,1,1 GT:PL:GQ 0/1:147,0,255:99 chr1 202304868 . T C 205 . DP=23;VDB=0.0373;AF1=0.5;AC1=1;DP4=8,1,8,5;MQ=60;FQ=126;PV4=0.33,0.46,1,0.19 GT:PL:GQ 0/1:235,0,153:99 chr1 202318316 . A C 193 . DP=32;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,13,2,13;MQ=59;FQ=193;PV4=1,1,1,1 GT:PL:GQ 0/1:223,0,223:99 chr1 202386075 . T C 222 . DP=29;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,27;MQ=59;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 202457784 . T A 133 . DP=16;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,3,0,11;MQ=60;FQ=65;PV4=0.27,0.37,1,1 GT:PL:GQ 0/1:163,0,92:95 chr1 202531741 . C T 3.54 . DP=14;VDB=0.0022;AF1=0.4998;AC1=1;DP4=8,2,4,0;MQ=60;FQ=5.47;PV4=1,1.4e-06,1,1 GT:PL:GQ 0/1:31,0,199:30 chr1 202536848 . C T 169 . DP=27;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,1,12,2;MQ=60;FQ=155;PV4=1,1,1,1 GT:PL:GQ 0/1:199,0,182:99 chr1 202565948 . G A 165 . DP=40;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,3,8,16;MQ=60;FQ=168;PV4=0.0041,4e-13,1,0.34 GT:PL:GQ 0/1:195,0,229:99 chr1 202572105 . GCCCCCCC GCCCCC 191 . INDEL;DP=79;VDB=0.0271;AF1=0.5;AC1=1;DP4=19,15,27,11;MQ=59;FQ=194;PV4=0.22,0.089,1,1 GT:PL:GQ 0/1:229,0,236:99 chr1 202574784 . G A 167 . DP=65;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,18,17,11;MQ=60;FQ=170;PV4=0.32,6e-11,1,1 GT:PL:GQ 0/1:197,0,255:99 chr1 202703053 . G A 181 . DP=31;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,24;MQ=58;FQ=-117 GT:PL:GQ 1/1:214,90,0:99 chr1 202705455 . G C 139 . DP=28;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,14,13;MQ=58;FQ=-108 GT:PL:GQ 1/1:172,81,0:99 chr1 202715244 . GAAAAAAAA GAAAAAAAAA 31.5 . INDEL;DP=62;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,51,11;MQ=60;FQ=-222 GT:PL:GQ 1/1:72,187,0:99 chr1 202715284 . G A 222 . DP=93;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,63,25;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 202718028 . A G 24 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:56,9,0:15 chr1 202718202 . G A 222 . DP=167;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,76,79;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 202722277 . G A 56.3 . DP=6;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:89,15,0:27 chr1 202731986 . CCTCA CCTCAACTCA 105 . INDEL;DP=4;VDB=0.0049;AF1=1;AC1=2;DP4=0,0,0,4;MQ=47;FQ=-46.5 GT:PL:GQ 1/1:145,12,0:21 chr1 202733238 . C T 212 . DP=24;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,11,13;MQ=60;FQ=-99 GT:PL:GQ 1/1:245,72,0:99 chr1 202735751 . T C 85 . DP=12;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,8;MQ=58;FQ=-57 GT:PL:GQ 1/1:118,30,0:57 chr1 202743892 . T C 30 . DP=37;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,20,0,14;MQ=59;FQ=33;PV4=0.51,7.4e-13,1,1 GT:PL:GQ 0/1:60,0,242:63 chr1 202827191 . G A 32 . DP=15;VDB=0.0393;AF1=0.5;AC1=1;DP4=8,1,6,0;MQ=60;FQ=35;PV4=1,8.2e-07,1,0.27 GT:PL:GQ 0/1:62,0,180:65 chr1 202887295 . G A 225 . DP=129;VDB=0.0345;AF1=0.5;AC1=1;DP4=41,36,24,27;MQ=60;FQ=225;PV4=0.59,0.37,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 202888947 . T C 182 . DP=80;VDB=0.0400;AF1=0.5;AC1=1;DP4=25,13,21,19;MQ=60;FQ=185;PV4=0.26,1.8e-34,1,0.32 GT:PL:GQ 0/1:212,0,255:99 chr1 202931839 . G A 77 . DP=38;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,11,4,14;MQ=59;FQ=80;PV4=0.3,9.5e-15,0.48,0.23 GT:PL:GQ 0/1:107,0,255:99 chr1 202931958 . G A 7.8 . DP=4;VDB=0.0186;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=10.4;PV4=1,0.0034,1,0.45 GT:PL:GQ 0/1:37,0,62:39 chr1 202933992 . G C 31 . DP=5;VDB=0.0194;AF1=0.5;AC1=1;DP4=1,2,0,2;MQ=60;FQ=34;PV4=1,1,1,0.47 GT:PL:GQ 0/1:61,0,89:64 chr1 202956340 . T G 225 . DP=46;VDB=0.0359;AF1=0.5;AC1=1;DP4=10,11,11,14;MQ=59;FQ=225;PV4=1,0.28,1,0.0093 GT:PL:GQ 0/1:255,0,255:99 chr1 202983873 . G A 20 . DP=22;VDB=0.0053;AF1=0.5;AC1=1;DP4=10,2,10,0;MQ=60;FQ=23;PV4=0.48,3e-15,1,1 GT:PL:GQ 0/1:50,0,226:53 chr1 202987770 . T C 95 . DP=30;VDB=0.0325;AF1=0.5;AC1=1;DP4=7,10,3,8;MQ=60;FQ=98;PV4=0.69,5.5e-09,1,0.12 GT:PL:GQ 0/1:125,0,255:99 chr1 202987796 . G A 58 . DP=24;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,9,2,8;MQ=59;FQ=61;PV4=0.66,8.3e-12,0.13,1 GT:PL:GQ 0/1:88,0,255:91 chr1 203004627 . ACCCCC ACCCCCC 94.5 . INDEL;DP=14;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,11,3;MQ=58;FQ=-76.5 GT:PL:GQ 1/1:135,42,0:81 chr1 203006243 . A G 222 . DP=98;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,64,29;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 203008174 . G C 185 . DP=38;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,16,17;MQ=60;FQ=-126 GT:PL:GQ 1/1:218,99,0:99 chr1 203008286 . C G 176 . DP=17;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,13;MQ=60;FQ=-78 GT:PL:GQ 1/1:209,51,0:99 chr1 203012705 . C G 113 . DP=36;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,14,2,19;MQ=59;FQ=116;PV4=1,3.1e-12,0.12,0.21 GT:PL:GQ 0/1:143,0,194:99 chr1 203012906 . G A 30.5 . DP=5;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:63,12,0:21 chr1 203013663 . A G 41 . DP=9;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,3,4,1;MQ=60;FQ=44;PV4=0.21,3.2e-05,1,1 GT:PL:GQ 0/1:71,0,115:74 chr1 203030207 . G A 110 . DP=29;VDB=0.0118;AF1=0.5;AC1=1;DP4=7,5,3,14;MQ=60;FQ=113;PV4=0.046,1.3e-15,1,0.069 GT:PL:GQ 0/1:140,0,241:99 chr1 203040673 . A G 30.5 . DP=4;VDB=0.0027;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:63,12,0:21 chr1 203040740 . T C 64 . DP=19;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,0,4,3;MQ=58;FQ=67;PV4=0.036,1.2e-06,1,1 GT:PL:GQ 0/1:94,0,167:97 chr1 203040816 . G C 77 . DP=44;VDB=0.0216;AF1=0.5;AC1=1;DP4=22,6,11,4;MQ=58;FQ=80;PV4=0.72,4.9e-17,1,1 GT:PL:GQ 0/1:107,0,255:99 chr1 203053768 . T C 222 . DP=25;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,15;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 203055101 . A G 128 . DP=24;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,5,15;MQ=59;FQ=-87 GT:PL:GQ 1/1:161,60,0:99 chr1 203098275 . T G 176 . DP=114;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,39,14,47;MQ=60;FQ=179;PV4=1,3.5e-30,1,0.14 GT:PL:GQ 0/1:206,0,255:99 chr1 203134135 . ATTTT ATTTTT 100 . INDEL;DP=31;VDB=0.0216;AF1=0.5;AC1=1;DP4=13,0,15,3;MQ=60;FQ=46.5;PV4=0.25,1,1,0.33 GT:PL:GQ 0/1:138,0,81:84 chr1 203137784 . ACT ACTCT 214 . INDEL;DP=40;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,29,11;MQ=58;FQ=-155 GT:PL:GQ 1/1:255,120,0:99 chr1 203143725 . G C 44 . DP=14;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,8,3,3;MQ=60;FQ=47;PV4=0.055,2e-07,1,0.32 GT:PL:GQ 0/1:74,0,136:77 chr1 203148633 . A G 222 . DP=30;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,11,19;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 203150208 . G A 15.1 . DP=4;VDB=0.0060;AF1=0.5003;AC1=1;DP4=1,0,3,0;MQ=60;FQ=4.07;PV4=1,0.022,1,0.12 GT:PL:GQ 0/1:45,0,29:32 chr1 203152801 . T C 104 . DP=38;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,1,17,5;MQ=60;FQ=107;PV4=0.37,1.7e-17,1,0.42 GT:PL:GQ 0/1:134,0,192:99 chr1 203153634 . C G 72 . DP=52;VDB=0.0271;AF1=0.5;AC1=1;DP4=22,4,20,5;MQ=60;FQ=75;PV4=0.73,5.4e-20,1,1 GT:PL:GQ 0/1:102,0,255:99 chr1 203154532 . A G 18 . DP=3;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:50,9,0:15 chr1 203155703 . A T 170 . DP=112;VDB=0.0399;AF1=0.5;AC1=1;DP4=28,15,32,29;MQ=59;FQ=173;PV4=0.23,5.1e-25,0.48,0.26 GT:PL:GQ 0/1:200,0,255:99 chr1 203155882 . G C 29.3 . DP=5;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:62,15,0:27 chr1 203175107 . A C 9.52 . DP=8;VDB=0.0189;AF1=0.5;AC1=1;DP4=0,5,0,3;MQ=60;FQ=12.3;PV4=1,9.1e-05,1,1 GT:PL:GQ 0/1:39,0,114:41 chr1 203186093 . G C 79 . DP=36;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,7,10,7;MQ=60;FQ=82;PV4=1,3.3e-13,1,1 GT:PL:GQ 0/1:109,0,255:99 chr1 203188692 . A C 27 . DP=17;VDB=0.0066;AF1=0.5;AC1=1;DP4=10,0,4,1;MQ=60;FQ=30;PV4=0.33,1.8e-05,1,0.18 GT:PL:GQ 0/1:57,0,162:60 chr1 203192820 . C T 79 . DP=19;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,8,2,8;MQ=60;FQ=82;PV4=1,5.1e-09,1,0.47 GT:PL:GQ 0/1:109,0,176:99 chr1 203194186 . C T 109 . DP=36;VDB=0.0216;AF1=0.5;AC1=1;DP4=16,4,12,4;MQ=60;FQ=112;PV4=1,1.6e-17,1,0.4 GT:PL:GQ 0/1:139,0,255:99 chr1 203317162 . C T 222 . DP=44;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,17;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 203455754 . G A 33 . DP=15;VDB=0.0164;AF1=0.5;AC1=1;DP4=9,0,5,1;MQ=60;FQ=36;PV4=0.4,1.1e-08,1,1 GT:PL:GQ 0/1:63,0,157:66 chr1 203652444 . A G 222 . DP=50;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,27;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 203667409 . T C 222 . DP=64;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,24,38;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 203689936 . C G 44 . DP=8;VDB=0.0070;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=47;PV4=1,0.072,1,0.41 GT:PL:GQ 0/1:74,0,99:77 chr1 203741368 . C A 14.2 . DP=6;VDB=0.0254;AF1=0.5;AC1=1;DP4=0,2,1,3;MQ=60;FQ=16.8;PV4=1,1e-05,1,0.066 GT:PL:GQ 0/1:44,0,56:46 chr1 203742915 . G A 29.2 . DP=9;VDB=0.0000;AF1=0.5263;AC1=1;DP4=1,0,6,0;MQ=60;FQ=-17.1;PV4=1,3.4e-05,1,1 GT:PL:GQ 0/1:59,0,10:13 chr1 203743122 . G A 176 . DP=88;VDB=0.0322;AF1=0.5;AC1=1;DP4=24,15,31,17;MQ=60;FQ=179;PV4=0.83,8.2e-16,1,1 GT:PL:GQ 0/1:206,0,255:99 chr1 203743653 . C T 97 . DP=62;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,22,12,16;MQ=60;FQ=100;PV4=0.6,4.3e-24,1,0.24 GT:PL:GQ 0/1:127,0,255:99 chr1 203769532 . G A 126 . DP=30;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,11,3,13;MQ=60;FQ=129;PV4=1,5.4e-13,1,0.18 GT:PL:GQ 0/1:156,0,219:99 chr1 203787700 . T C 207 . DP=10;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,6,4;MQ=60;FQ=-57 GT:PL:GQ 1/1:240,30,0:57 chr1 203803016 . A G 222 . DP=21;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,2,18;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr1 203818973 . C A 132 . DP=45;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,17,8,14;MQ=59;FQ=135;PV4=0.53,1.3e-13,0.11,1 GT:PL:GQ 0/1:162,0,255:99 chr1 203819177 . T C 138 . DP=47;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,17,8,16;MQ=60;FQ=141;PV4=0.33,2.5e-17,0.18,0.45 GT:PL:GQ 0/1:168,0,255:99 chr1 203821200 . G A 219 . DP=16;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,15,1;MQ=59;FQ=-75 GT:PL:GQ 1/1:252,48,0:93 chr1 203821314 . G A 153 . DP=63;VDB=0.0298;AF1=0.5;AC1=1;DP4=17,16,12,16;MQ=45;FQ=156;PV4=0.61,6.3e-16,1,1 GT:PL:GQ 0/1:183,0,255:99 chr1 204006095 . A G 208 . DP=48;VDB=0.0099;AF1=0.5;AC1=1;DP4=22,3,20,2;MQ=60;FQ=211;PV4=1,1,1,1 GT:PL:GQ 0/1:238,0,255:99 chr1 204006538 . T C 18.6 . DP=4;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:51,12,0:20 chr1 204006597 . G A 220 . DP=15;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,2;MQ=60;FQ=-69 GT:PL:GQ 1/1:253,42,0:81 chr1 204010389 . G T 140 . DP=46;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,3,39;MQ=59;FQ=-153 GT:PL:GQ 1/1:173,126,0:99 chr1 204082002 . C T 211 . DP=14;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,11,2;MQ=60;FQ=-66 GT:PL:GQ 1/1:244,39,0:75 chr1 204086324 . C T 169 . DP=55;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,19,12,17;MQ=59;FQ=172;PV4=0.39,7.1e-19,1,0.42 GT:PL:GQ 0/1:199,0,255:99 chr1 204103618 . G A 172 . DP=44;VDB=0.0322;AF1=0.5;AC1=1;DP4=24,3,14,2;MQ=60;FQ=175;PV4=1,0.44,1,1 GT:PL:GQ 0/1:202,0,255:99 chr1 204110334 . A G 222 . DP=86;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,61,24;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 204116452 . G A 87 . DP=23;VDB=0.0081;AF1=0.5;AC1=1;DP4=7,1,13,1;MQ=60;FQ=90;PV4=1,5.7e-08,1,1 GT:PL:GQ 0/1:117,0,150:99 chr1 204120952 . G T 160 . DP=39;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,15,8,11;MQ=58;FQ=163;PV4=0.32,2.4e-08,0.48,1 GT:PL:GQ 0/1:190,0,255:99 chr1 204124865 . C T 111 . DP=38;VDB=0.0216;AF1=0.5;AC1=1;DP4=12,6,16,3;MQ=60;FQ=114;PV4=0.27,3.1e-12,1,1 GT:PL:GQ 0/1:141,0,255:99 chr1 204125089 . G A 57 . DP=5;VDB=0.0040;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=33;PV4=1,0.37,1,1 GT:PL:GQ 0/1:87,0,60:63 chr1 204126378 . G A 3.01 . DP=14;VDB=0.0066;AF1=0.4997;AC1=1;DP4=9,0,4,0;MQ=60;FQ=4.77;PV4=1,4.1e-07,1,0.36 GT:PL:GQ 0/1:30,0,160:28 chr1 204379617 . T C 222 . DP=84;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,48,34;MQ=60;FQ=-274 GT:PL:GQ 1/1:255,247,0:99 chr1 204400783 . A G 57 . DP=14;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,0,5,2;MQ=60;FQ=60;PV4=0.46,1e-05,1,0.17 GT:PL:GQ 0/1:87,0,119:90 chr1 204409281 . C G 99 . DP=24;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,21,2;MQ=60;FQ=-96 GT:PL:GQ 1/1:132,69,0:99 chr1 204413297 . C T 124 . DP=50;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,19;MQ=59;FQ=-138 GT:PL:GQ 1/1:157,111,0:99 chr1 204413299 . G A 136 . DP=52;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,18;MQ=59;FQ=-135 GT:PL:GQ 1/1:169,108,0:99 chr1 204418939 . C T 42.3 . DP=5;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,3,2;MQ=60;FQ=-42 GT:PL:GQ 1/1:75,15,0:27 chr1 204419217 . CAGGCTGAGGCTGAGGCTGAGG CAGGCTGAGGCTGAGGCTGAGGCTGAGG 33.5 . INDEL;DP=20;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,8,0,5;MQ=50;FQ=36.5;PV4=1,1,0,1 GT:PL:GQ 0/1:71,0,246:74 chr1 204429838 . C G 135 . DP=17;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,3,14;MQ=60;FQ=-78 GT:PL:GQ 1/1:168,51,0:99 chr1 204433093 . A C 52.1 . DP=8;VDB=0.0118;AF1=0.5102;AC1=1;DP4=1,0,7,0;MQ=60;FQ=-13.2;PV4=1,0.0012,1,0.13 GT:PL:GQ 0/1:82,0,14:17 chr1 204434277 . T C 103 . DP=16;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,14,2;MQ=60;FQ=-75 GT:PL:GQ 1/1:136,48,0:93 chr1 204438334 . C T 197 . DP=50;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,34;MQ=60;FQ=-175 GT:PL:GQ 1/1:230,148,0:99 chr1 204438643 . G T 222 . DP=58;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,36,21;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr1 204505976 . GAAAAAAA GAAAAAA 15.6 . INDEL;DP=8;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-58.5 GT:PL:GQ 1/1:56,24,0:36 chr1 204506107 . C T 158 . DP=38;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,22;MQ=60;FQ=-138 GT:PL:GQ 1/1:191,111,0:99 chr1 204512100 . T C 59 . DP=12;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-63 GT:PL:GQ 1/1:92,36,0:69 chr1 204515863 . C T 41 . DP=12;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,10,0;MQ=58;FQ=-57 GT:PL:GQ 1/1:74,30,0:57 chr1 204516025 . A G 222 . DP=155;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,94,52;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 204518842 . C A 123 . DP=22;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,18;MQ=60;FQ=-87 GT:PL:GQ 1/1:156,60,0:99 chr1 204587240 . G A 206 . DP=30;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,13,13;MQ=59;FQ=-76;PV4=1,0.019,0.42,1 GT:PL:GQ 1/1:239,49,0:95 chr1 204889909 . G A 6.98 . DP=9;VDB=0.0301;AF1=0.4999;AC1=1;DP4=1,4,0,4;MQ=60;FQ=9.53;PV4=1,5.5e-05,1,0.37 GT:PL:GQ 0/1:36,0,131:37 chr1 204915393 . A G 132 . DP=30;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,19,8;MQ=60;FQ=-108 GT:PL:GQ 1/1:165,81,0:99 chr1 204915757 . G A 190 . DP=80;VDB=0.0398;AF1=0.5;AC1=1;DP4=19,19,21,20;MQ=60;FQ=193;PV4=1,8e-16,1,1 GT:PL:GQ 0/1:220,0,255:99 chr1 204917708 . Aaaaacaaaacaaaacaaaacaaaa Aaaaacaaaacaaaacaaaa 217 . INDEL;DP=56;VDB=0.0271;AF1=0.5;AC1=1;DP4=19,6,19,7;MQ=58;FQ=217;PV4=1,1.2e-06,0.021,0.25 GT:PL:GQ 0/1:255,0,255:99 chr1 204917909 . T C 100 . DP=19;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,11,0,8;MQ=58;FQ=103;PV4=1,1,0.044,0.14 GT:PL:GQ 0/1:130,0,160:99 chr1 204943285 . A T 219 . DP=51;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,34,12;MQ=58;FQ=-165 GT:PL:GQ 1/1:252,138,0:99 chr1 204943947 . C A 106 . DP=28;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,7,5,10;MQ=59;FQ=109;PV4=0.71,1.4e-07,0.19,0.087 GT:PL:GQ 0/1:136,0,222:99 chr1 204943992 . A G 168 . DP=25;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,10;MQ=59;FQ=-75 GT:PL:GQ 1/1:201,48,0:93 chr1 204945316 . T C 92 . DP=36;VDB=0.0384;AF1=0.5;AC1=1;DP4=6,10,5,12;MQ=59;FQ=95;PV4=0.72,2e-13,0.17,0.22 GT:PL:GQ 0/1:122,0,255:99 chr1 204945489 . C A 44 . DP=10;VDB=0.0025;AF1=0.5;AC1=1;DP4=3,0,7,0;MQ=60;FQ=41.6;PV4=1,0.00017,1,1 GT:PL:GQ 0/1:74,0,70:72 chr1 204945665 . G A 142 . DP=69;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,18,16,19;MQ=60;FQ=145;PV4=1,5.2e-25,0.17,0.47 GT:PL:GQ 0/1:172,0,255:99 chr1 204945678 . A AT 109 . INDEL;DP=73;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,18,17,22;MQ=60;FQ=99.3;PV4=1,1,0.18,0.07 GT:PL:GQ 0/1:147,0,134:99 chr1 204945746 . G C 160 . DP=51;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,13,10,14;MQ=60;FQ=163;PV4=1,7.2e-10,1,0.49 GT:PL:GQ 0/1:190,0,255:99 chr1 204945934 . A G 165 . DP=28;VDB=0.0373;AF1=0.5;AC1=1;DP4=10,8,4,6;MQ=60;FQ=168;PV4=0.69,1,1,0.26 GT:PL:GQ 0/1:195,0,255:99 chr1 204946668 . T C 210 . DP=55;VDB=0.0042;AF1=0.5;AC1=1;DP4=20,5,27,2;MQ=60;FQ=213;PV4=0.23,1,1,1 GT:PL:GQ 0/1:240,0,255:99 chr1 204946764 . T C 225 . DP=118;VDB=0.0380;AF1=0.5;AC1=1;DP4=33,25,24,32;MQ=60;FQ=225;PV4=0.19,0.26,0.49,1 GT:PL:GQ 0/1:255,0,255:99 chr1 204948659 . A G 113 . DP=17;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,8,0,8;MQ=60;FQ=116;PV4=1,1,1,1 GT:PL:GQ 0/1:143,0,158:99 chr1 204949645 . G A 18.1 . DP=11;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,7,0,4;MQ=60;FQ=21;PV4=1,7.7e-05,1,0.34 GT:PL:GQ 0/1:48,0,135:51 chr1 204951184 . CTT CT 101 . INDEL;DP=33;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,16,0,13;MQ=60;FQ=104;PV4=0.25,0.0015,1,1 GT:PL:GQ 0/1:139,0,255:99 chr1 204966428 . C G 222 . DP=84;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,48,36;MQ=60;FQ=-280 GT:PL:GQ 1/1:255,253,0:99 chr1 204966690 . G A 222 . DP=38;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,27;MQ=59;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 204966749 . A G 189 . DP=16;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,13;MQ=60;FQ=-69 GT:PL:GQ 1/1:222,42,0:81 chr1 204978533 . A G 116 . DP=170;VDB=0.0398;AF1=0.5;AC1=1;DP4=48,39,35,42;MQ=59;FQ=119;PV4=0.27,1e-66,0.45,1 GT:PL:GQ 0/1:146,0,255:99 chr1 204978643 . C A 47 . DP=190;VDB=0.0380;AF1=0.5;AC1=1;DP4=46,53,43,22;MQ=59;FQ=50;PV4=0.016,3.2e-70,0.49,1 GT:PL:GQ 0/1:77,0,255:80 chr1 205028883 . cagag cag 44.5 . INDEL;DP=5;VDB=0.0002;AF1=0.5;AC1=1;DP4=1,1,0,2;MQ=60;FQ=43.4;PV4=1,1,1,1 GT:PL:GQ 0/1:82,0,80:81 chr1 205038731 . C T 46 . DP=19;VDB=0.0042;AF1=0.5;AC1=1;DP4=2,7,1,8;MQ=60;FQ=49;PV4=1,1.3e-07,1,0.34 GT:PL:GQ 0/1:76,0,179:79 chr1 205039288 . T C 222 . DP=22;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,7,4,10;MQ=60;FQ=118;PV4=0.61,0.36,1,1 GT:PL:GQ 0/1:252,0,145:99 chr1 205041015 . G A 6.98 . DP=4;VDB=0.0215;AF1=0.5003;AC1=1;DP4=1,0,3,0;MQ=60;FQ=3.2;PV4=1,0.012,1,1 GT:PL:GQ 0/1:36,0,28:31 chr1 205052939 . G A 159 . DP=49;VDB=0.0393;AF1=0.5;AC1=1;DP4=14,10,8,15;MQ=60;FQ=162;PV4=0.15,1.5e-13,1,1 GT:PL:GQ 0/1:189,0,255:99 chr1 205053219 . C T 161 . DP=50;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,11,12,13;MQ=59;FQ=164;PV4=0.78,2.7e-17,0.29,1 GT:PL:GQ 0/1:191,0,255:99 chr1 205063949 . C T 113 . DP=8;VDB=0.0006;AF1=0.5263;AC1=1;DP4=1,0,6,1;MQ=60;FQ=-17.1;PV4=1,0.44,1,1 GT:PL:GQ 0/1:143,0,10:13 chr1 205065733 . G T 24 . DP=6;VDB=0.0098;AF1=0.5;AC1=1;DP4=3,0,2,1;MQ=60;FQ=27;PV4=1,0.0059,1,0.32 GT:PL:GQ 0/1:54,0,74:57 chr1 205083865 . T C 25 . DP=6;VDB=0.0170;AF1=0.5;AC1=1;DP4=2,1,2,0;MQ=60;FQ=28;PV4=1,1,1,1 GT:PL:GQ 0/1:55,0,92:58 chr1 205084120 . G A 53 . DP=15;VDB=0.0392;AF1=0.5;AC1=1;DP4=0,6,0,8;MQ=60;FQ=56;PV4=1,1.1e-07,1,0.4 GT:PL:GQ 0/1:83,0,122:86 chr1 205090885 . C G 214 . DP=72;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,16,22,4;MQ=60;FQ=217;PV4=0.099,0.052,0.098,0.42 GT:PL:GQ 0/1:244,0,255:99 chr1 205130413 . A G 142 . DP=31;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,4,13,5;MQ=60;FQ=145;PV4=0.69,6.4e-09,1,1 GT:PL:GQ 0/1:172,0,211:99 chr1 205225457 . G A 84 . DP=15;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,1,9,1;MQ=58;FQ=82.9;PV4=1,5.6e-07,0.25,0.34 GT:PL:GQ 0/1:114,0,112:99 chr1 205238275 . A G 183 . DP=98;VDB=0.0365;AF1=0.5;AC1=1;DP4=31,16,24,26;MQ=59;FQ=186;PV4=0.1,4e-28,1,0.21 GT:PL:GQ 0/1:213,0,255:99 chr1 205238530 . C T 225 . DP=48;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,10,9,14;MQ=59;FQ=225;PV4=0.38,0.083,1,0.14 GT:PL:GQ 0/1:255,0,255:99 chr1 205239031 . C G 12.3 . DP=11;VDB=0.0001;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=60;FQ=15.1;PV4=1,7.5e-05,1,1 GT:PL:GQ 0/1:42,0,100:44 chr1 205272926 . C T 151 . DP=49;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,9,13,8;MQ=60;FQ=154;PV4=1,4.2e-12,1,1 GT:PL:GQ 0/1:181,0,255:99 chr1 205272983 . C G 125 . DP=79;VDB=0.0365;AF1=0.5;AC1=1;DP4=24,26,14,13;MQ=60;FQ=128;PV4=0.81,3.2e-14,0.088,0.27 GT:PL:GQ 0/1:155,0,255:99 chr1 205275421 . A G 222 . DP=31;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,19;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 205306590 . G A 76 . DP=25;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,3,7,3;MQ=60;FQ=79;PV4=0.65,1.4e-07,1,1 GT:PL:GQ 0/1:106,0,242:99 chr1 205312280 . C G 28 . DP=13;VDB=0.0011;AF1=0.5;AC1=1;DP4=8,0,5,0;MQ=58;FQ=31;PV4=1,2.2e-07,1,0.21 GT:PL:GQ 0/1:58,0,149:61 chr1 205325609 . C A 157 . DP=66;VDB=0.0393;AF1=0.5;AC1=1;DP4=15,14,15,15;MQ=60;FQ=160;PV4=1,5.6e-17,1,0.18 GT:PL:GQ 0/1:187,0,255:99 chr1 205385498 . C T 173 . DP=84;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,28,13,30;MQ=59;FQ=176;PV4=1,1.9e-35,0.086,0.22 GT:PL:GQ 0/1:203,0,255:99 chr1 205492756 . A G 222 . DP=43;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,24;MQ=59;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 205495392 . A G 222 . DP=62;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,24,27;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 205495976 . A G 178 . DP=62;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,24,32;MQ=60;FQ=-196 GT:PL:GQ 1/1:211,169,0:99 chr1 205499577 . C G 101 . DP=13;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,8;MQ=60;FQ=-66 GT:PL:GQ 1/1:134,39,0:75 chr1 205499660 . C T 222 . DP=21;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,3;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr1 205500543 . T C 222 . DP=89;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,40,44;MQ=60;FQ=-280 GT:PL:GQ 1/1:255,253,0:99 chr1 205554085 . G C 163 . DP=56;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,14,35;MQ=59;FQ=-148;PV4=1,1.8e-07,1,0.27 GT:PL:GQ 1/1:196,121,0:99 chr1 205554095 . A C 222 . DP=50;VDB=0.0322;AF1=1;AC1=2;DP4=0,1,13,36;MQ=59;FQ=-148;PV4=1,0.0015,1,0.27 GT:PL:GQ 1/1:255,121,0:99 chr1 205615791 . A G 225 . DP=49;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,7,19,6;MQ=60;FQ=225;PV4=0.75,0.14,1,0.48 GT:PL:GQ 0/1:255,0,255:99 chr1 205615947 . C A 16.2 . DP=12;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:49,18,0:29 chr1 205689807 . T G 201 . DP=45;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,19,2,21;MQ=60;FQ=204;PV4=0.67,0.019,1,0.075 GT:PL:GQ 0/1:231,0,255:99 chr1 205696671 . G A 36.5 . DP=4;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:69,12,0:21 chr1 205739396 . T G 153 . DP=42;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,30,7;MQ=60;FQ=-138 GT:PL:GQ 1/1:186,111,0:99 chr1 205744138 . G T 65 . DP=43;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,17,4,14;MQ=59;FQ=68;PV4=0.69,7.3e-13,1,1 GT:PL:GQ 0/1:95,0,238:98 chr1 205764640 . G A 137 . DP=28;VDB=0.0164;AF1=1;AC1=2;DP4=0,1,8,19;MQ=60;FQ=-74;PV4=1,1.5e-06,1,1 GT:PL:GQ 1/1:170,47,0:91 chr1 205766159 . CAAA CAA 214 . INDEL;DP=47;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,19,28;MQ=60;FQ=-176 GT:PL:GQ 1/1:255,141,0:99 chr1 205767885 . G A 225 . DP=121;VDB=0.0399;AF1=0.5;AC1=1;DP4=33,31,30,25;MQ=60;FQ=225;PV4=0.85,0.022,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 205779231 . G A 108 . DP=65;VDB=0.0164;AF1=0.5;AC1=1;DP4=30,4,25,4;MQ=59;FQ=111;PV4=1,5.3e-27,1,0.25 GT:PL:GQ 0/1:138,0,255:99 chr1 205801872 . A G 166 . DP=83;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,25,11,25;MQ=59;FQ=169;PV4=0.25,7.7e-22,0.44,1 GT:PL:GQ 0/1:196,0,255:99 chr1 205814485 . G A 194 . DP=121;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,27,33,34;MQ=60;FQ=197;PV4=1,1.3e-18,0.1,0.05 GT:PL:GQ 0/1:224,0,255:99 chr1 205814497 . T C 222 . DP=115;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,54,57;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 205859798 . G C 26 . DP=4;VDB=0.0194;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=25.5;PV4=1,1,1,0.094 GT:PL:GQ 0/1:56,0,55:55 chr1 205890679 . T C 126 . DP=39;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,33,6;MQ=59;FQ=-144 GT:PL:GQ 1/1:159,117,0:99 chr1 205896475 . C T 144 . DP=23;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,17;MQ=60;FQ=-90 GT:PL:GQ 1/1:177,63,0:99 chr1 205896948 . A G 46.3 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:79,15,0:27 chr1 206224412 . T C 133 . DP=105;VDB=0.0398;AF1=0.5;AC1=1;DP4=42,9,28,21;MQ=60;FQ=136;PV4=0.0085,1.1e-41,1,1 GT:PL:GQ 0/1:163,0,255:99 chr1 206224830 . G C 179 . DP=47;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,13,9,15;MQ=60;FQ=182;PV4=0.77,2.4e-05,1,1 GT:PL:GQ 0/1:209,0,255:99 chr1 206225011 . G C 117 . DP=51;VDB=0.0384;AF1=0.5;AC1=1;DP4=12,12,11,14;MQ=60;FQ=120;PV4=0.78,9.1e-21,1,1 GT:PL:GQ 0/1:147,0,255:99 chr1 206230986 . G A 179 . DP=39;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,4,14,10;MQ=59;FQ=172;PV4=0.72,7.8e-09,0.23,1 GT:PL:GQ 0/1:209,0,199:99 chr1 206231203 . G A 106 . DP=30;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,10,4,14;MQ=60;FQ=109;PV4=1,7.1e-10,1,1 GT:PL:GQ 0/1:136,0,188:99 chr1 206231259 . A G 21 . DP=9;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=24;PV4=1,0.00013,1,1 GT:PL:GQ 0/1:51,0,102:54 chr1 206231264 . G A 25 . DP=7;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=28;PV4=1,7e-05,1,1 GT:PL:GQ 0/1:55,0,80:58 chr1 206516261 . C T 97 . DP=47;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,0,19,0;MQ=33;FQ=100;PV4=1,0.0008,0.078,0.14 GT:PL:GQ 0/1:127,0,155:99 chr1 206566904 . T C 96 . DP=78;VDB=0.0025;AF1=0.5;AC1=1;DP4=30,4,39,2;MQ=48;FQ=99;PV4=0.4,1.5e-20,0.00011,1 GT:PL:GQ 0/1:126,0,255:99 chr1 206567100 . C T 25 . DP=59;VDB=0.0066;AF1=0.5;AC1=1;DP4=4,37,3,13;MQ=59;FQ=28;PV4=0.39,2.9e-17,0.2,1 GT:PL:GQ 0/1:55,0,255:58 chr1 206579936 . A G 55 . DP=39;VDB=0.0298;AF1=0.5;AC1=1;DP4=18,2,16,2;MQ=20;FQ=57.4;PV4=1,2.4e-14,1,1 GT:PL:GQ 0/1:85,0,93:87 chr1 206592808 . A G 42 . DP=16;VDB=0.0014;AF1=0.5;AC1=1;DP4=1,9,1,5;MQ=59;FQ=45;PV4=1,5e-05,1,1 GT:PL:GQ 0/1:72,0,176:75 chr1 206623685 . G T 186 . DP=53;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,27,21;MQ=60;FQ=-171 GT:PL:GQ 1/1:219,144,0:99 chr1 206623866 . C T 88.5 . DP=4;VDB=0.0059;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:121,12,0:21 chr1 206626607 . G A 222 . DP=36;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,21,14;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 206626779 . A G 59.1 . DP=7;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:92,21,0:39 chr1 206631532 . T A 70.5 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:103,12,0:21 chr1 206646427 . C A 83 . DP=11;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,11,0;MQ=58;FQ=-60 GT:PL:GQ 1/1:116,33,0:63 chr1 206647742 . A G 176 . DP=42;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,30,12;MQ=59;FQ=-153 GT:PL:GQ 1/1:209,126,0:99 chr1 206647787 . T C 155 . DP=51;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,12,12,11;MQ=59;FQ=158;PV4=0.78,8.4e-09,1,0.12 GT:PL:GQ 0/1:185,0,255:99 chr1 206648147 . T G 105 . DP=24;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,1,14,2;MQ=60;FQ=78;PV4=1,1.5e-07,1,0.27 GT:PL:GQ 0/1:135,0,105:99 chr1 206649952 . G A 12.3 . DP=15;VDB=0.0033;AF1=0.5;AC1=1;DP4=9,0,6,0;MQ=60;FQ=15.1;PV4=1,5.2e-06,1,1 GT:PL:GQ 0/1:42,0,144:44 chr1 206652524 . T C 92 . DP=71;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,29,9,25;MQ=60;FQ=95;PV4=0.39,3.6e-24,1,1 GT:PL:GQ 0/1:122,0,255:99 chr1 206658569 . G A 184 . DP=73;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,14,21,18;MQ=59;FQ=187;PV4=1,8.6e-14,1,0.14 GT:PL:GQ 0/1:214,0,255:99 chr1 206665896 . C G 210 . DP=43;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,9,33;MQ=60;FQ=-153 GT:PL:GQ 1/1:243,126,0:99 chr1 206667441 . G A 90 . DP=39;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,13,4,20;MQ=59;FQ=93;PV4=0.63,2.4e-19,0.23,1 GT:PL:GQ 0/1:120,0,179:99 chr1 206670827 . G T 122 . DP=29;VDB=0.0271;AF1=0.5;AC1=1;DP4=18,2,8,1;MQ=60;FQ=125;PV4=1,1,1,0.46 GT:PL:GQ 0/1:152,0,219:99 chr1 206680983 . A C 222 . DP=24;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,13,11;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 206757857 . C A 225 . DP=104;VDB=0.0400;AF1=0.5;AC1=1;DP4=25,26,23,27;MQ=60;FQ=225;PV4=0.84,0.23,1,0.22 GT:PL:GQ 0/1:255,0,255:99 chr1 206758077 . T A 222 . DP=50;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,9,41;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 206765254 . C T 13.2 . DP=8;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=16.1;PV4=1,0.0026,1,1 GT:PL:GQ 0/1:43,0,103:46 chr1 206769047 . T C 76 . DP=36;VDB=0.0190;AF1=0.5;AC1=1;DP4=16,3,16,1;MQ=59;FQ=79;PV4=0.61,3.5e-14,0.15,1 GT:PL:GQ 0/1:106,0,253:99 chr1 206772753 . A G 7.59 . DP=2;VDB=0.0174;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr1 206773659 . A G 170 . DP=66;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,24,38;MQ=60;FQ=-214 GT:PL:GQ 1/1:203,187,0:99 chr1 206821569 . C T 101 . DP=72;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,21,8,22;MQ=60;FQ=104;PV4=0.086,2.6e-28,1,0.071 GT:PL:GQ 0/1:131,0,255:99 chr1 206904644 . Cgtgtgtgtgtgtgtgtgtgt Cgtgtgtgtgtgtgtgtgt 30.5 . INDEL;DP=23;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,8,1,1;MQ=60;FQ=33.5;PV4=0.45,1,1,0.34 GT:PL:GQ 0/1:68,0,255:71 chr1 206943351 . T C 83 . DP=8;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:116,24,0:45 chr1 206944233 . A G 75 . DP=59;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,12,19,8;MQ=60;FQ=78;PV4=0.58,1.2e-23,0.14,0.46 GT:PL:GQ 0/1:105,0,255:99 chr1 206944645 . T C 37 . DP=7;VDB=0.0004;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=13.2;PV4=1,0.086,1,0.024 GT:PL:GQ 0/1:67,0,40:43 chr1 206944861 . A C 17.1 . DP=11;VDB=0.0313;AF1=0.5;AC1=1;DP4=2,5,1,3;MQ=58;FQ=20.1;PV4=1,3.3e-06,1,1 GT:PL:GQ 0/1:47,0,167:50 chr1 207014472 . A C 222 . DP=34;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,13,21;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 207015957 . T C 190 . DP=41;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,16;MQ=59;FQ=-147 GT:PL:GQ 1/1:223,120,0:99 chr1 207040659 . G A 173 . DP=14;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:206,42,0:81 chr1 207074905 . T C 102 . DP=27;VDB=0.0384;AF1=0.5;AC1=1;DP4=8,6,6,5;MQ=59;FQ=105;PV4=1,8.6e-10,0.13,1 GT:PL:GQ 0/1:132,0,255:99 chr1 207075171 . T C 57 . DP=10;VDB=0.0004;AF1=0.5;AC1=1;DP4=5,0,5,0;MQ=60;FQ=58.6;PV4=1,0.3,1,0.42 GT:PL:GQ 0/1:87,0,91:89 chr1 207086969 . A G 13.2 . DP=6;VDB=0.0027;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=16;PV4=1,7.5e-05,1,0.16 GT:PL:GQ 0/1:43,0,57:45 chr1 207087435 . C T 55 . DP=41;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,18,2,20;MQ=59;FQ=58;PV4=1,1.8e-20,0.18,1 GT:PL:GQ 0/1:85,0,200:88 chr1 207108191 . CATATATATATATAt CATATATATATAt 88.5 . INDEL;DP=9;VDB=0.0042;AF1=0.5064;AC1=1;DP4=1,0,0,4;MQ=60;FQ=-18.6;PV4=0.2,1,1,1 GT:PL:GQ 0/1:126,0,16:19 chr1 207109116 . C T 111 . DP=45;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,18,8,13;MQ=59;FQ=114;PV4=0.33,1.6e-11,1,1 GT:PL:GQ 0/1:141,0,255:99 chr1 207109167 . G A 31 . DP=20;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,9,0,11;MQ=59;FQ=34;PV4=1,1.1e-12,0.19,0.26 GT:PL:GQ 0/1:61,0,149:64 chr1 207110363 . A G 88 . DP=9;VDB=0.0003;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=72.9;PV4=1,0.29,1,0.27 GT:PL:GQ 0/1:118,0,100:99 chr1 207110936 . T C 149 . DP=62;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,12,19,17;MQ=60;FQ=152;PV4=1,2e-25,1,0.48 GT:PL:GQ 0/1:179,0,255:99 chr1 207113755 . G C 39 . DP=8;VDB=0.0149;AF1=0.5;AC1=1;DP4=2,3,3,0;MQ=60;FQ=42;PV4=0.2,1,1,1 GT:PL:GQ 0/1:69,0,120:72 chr1 207132345 . A G 86 . DP=46;VDB=0.0244;AF1=0.5;AC1=1;DP4=8,22,6,10;MQ=60;FQ=89;PV4=0.51,2.9e-21,1,1 GT:PL:GQ 0/1:116,0,255:99 chr1 207135736 . G C 179 . DP=82;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,27,17,24;MQ=59;FQ=182;PV4=0.36,2.6e-26,1,0.22 GT:PL:GQ 0/1:209,0,255:99 chr1 207139046 . A G 26 . DP=9;VDB=0.0014;AF1=0.5;AC1=1;DP4=3,0,6,0;MQ=60;FQ=28.8;PV4=1,3.5e-05,1,0.41 GT:PL:GQ 0/1:56,0,68:59 chr1 207139362 . C G 4.77 . DP=4;VDB=0.0170;AF1=0.5001;AC1=1;DP4=0,1,0,2;MQ=60;FQ=3.68;PV4=1,0.05,1,1 GT:PL:GQ 0/1:33,0,30:31 chr1 207140440 . C T 103 . DP=21;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,4,6,6;MQ=60;FQ=106;PV4=1,3e-09,1,1 GT:PL:GQ 0/1:133,0,200:99 chr1 207143422 . A G 184 . DP=51;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,8,19,2;MQ=59;FQ=187;PV4=0.17,0.21,1,0.041 GT:PL:GQ 0/1:214,0,255:99 chr1 207143550 . C T 69 . DP=50;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,21,4,15;MQ=59;FQ=72;PV4=1,4.2e-23,0.12,0.27 GT:PL:GQ 0/1:99,0,255:99 chr1 207195779 . A G 128 . DP=29;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,10,16;MQ=60;FQ=-105 GT:PL:GQ 1/1:161,78,0:99 chr1 207235954 . G A 222 . DP=108;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,56,46;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 207238419 . C T 60 . DP=19;VDB=0.0008;AF1=0.5;AC1=1;DP4=5,10,1,3;MQ=60;FQ=63;PV4=1,1,1,1 GT:PL:GQ 0/1:90,0,255:93 chr1 207241436 . gtt gt 80.5 . INDEL;DP=10;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,7,0;MQ=35;FQ=-55.5 GT:PL:GQ 1/1:121,21,0:39 chr1 207243851 . A G 86 . DP=12;VDB=0.0011;AF1=0.5;AC1=1;DP4=2,5,3,2;MQ=60;FQ=89;PV4=0.56,1,1,1 GT:PL:GQ 0/1:116,0,155:99 chr1 207269980 . C T 165 . DP=65;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,19,16,14;MQ=59;FQ=168;PV4=0.45,2.6e-12,0.47,1 GT:PL:GQ 0/1:195,0,255:99 chr1 207297680 . T C 225 . DP=69;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,20,14,22;MQ=60;FQ=225;PV4=1,0.27,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr1 207300259 . A G 159 . DP=64;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,22,10,23;MQ=60;FQ=162;PV4=0.79,3.2e-20,1,0.1 GT:PL:GQ 0/1:189,0,255:99 chr1 207304900 . T C 128 . DP=61;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,6,19,6;MQ=60;FQ=131;PV4=0.74,9.8e-18,1,0.42 GT:PL:GQ 0/1:158,0,255:99 chr1 207314356 . A C 28 . DP=12;VDB=0.0333;AF1=0.5;AC1=1;DP4=7,1,2,2;MQ=60;FQ=31;PV4=0.24,0.00015,1,0.33 GT:PL:GQ 0/1:58,0,174:61 chr1 207500032 . G A 78 . DP=32;VDB=0.0118;AF1=0.5;AC1=1;DP4=15,0,13,4;MQ=59;FQ=81;PV4=0.1,6.8e-17,0.18,0.36 GT:PL:GQ 0/1:108,0,173:99 chr1 207500293 . C T 36 . DP=13;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:69,36,0:66 chr1 207504669 . G A 173 . DP=41;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,39;MQ=60;FQ=-144 GT:PL:GQ 1/1:206,117,0:99 chr1 207510289 . T C 210 . DP=48;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,10,33;MQ=59;FQ=-156 GT:PL:GQ 1/1:243,129,0:99 chr1 207510548 . A G 70 . DP=18;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,12,1;MQ=56;FQ=-66 GT:PL:GQ 1/1:103,39,0:75 chr1 207510596 . G A 222 . DP=74;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,62,7;MQ=59;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr1 207520376 . T C 135 . DP=31;VDB=0.0373;AF1=0.5;AC1=1;DP4=10,3,14,4;MQ=60;FQ=138;PV4=1,0.00012,1,0.011 GT:PL:GQ 0/1:165,0,218:99 chr1 207527285 . G A 87 . DP=27;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,21,1;MQ=60;FQ=-93 GT:PL:GQ 1/1:120,66,0:99 chr1 207646322 . G A 225 . DP=50;VDB=0.0398;AF1=0.5;AC1=1;DP4=16,11,16,7;MQ=60;FQ=225;PV4=0.56,1,1,0.15 GT:PL:GQ 0/1:255,0,255:99 chr1 207653395 . C A 222 . DP=143;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,60,74;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 207679229 . T G 158 . DP=93;VDB=0.0271;AF1=0.5;AC1=1;DP4=30,15,37,10;MQ=58;FQ=161;PV4=0.24,1.6e-33,0.024,0.28 GT:PL:GQ 0/1:188,0,255:99 chr1 207679307 . A G 189 . DP=100;VDB=0.0399;AF1=0.5;AC1=1;DP4=24,22,27,25;MQ=54;FQ=192;PV4=1,7.4e-29,5.4e-08,0.43 GT:PL:GQ 0/1:219,0,255:99 chr1 207753621 . A G 178 . DP=54;VDB=0.0053;AF1=0.5;AC1=1;DP4=4,30,2,18;MQ=60;FQ=181;PV4=1,0.2,0.098,1 GT:PL:GQ 0/1:208,0,255:99 chr1 207758232 . A G 225 . DP=68;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,31,9,14;MQ=60;FQ=225;PV4=0.59,1,1,0.45 GT:PL:GQ 0/1:255,0,255:99 chr1 207782916 . A T 171 . DP=74;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,25,47;MQ=60;FQ=-244 GT:PL:GQ 1/1:204,217,0:99 chr1 207782931 . A G 225 . DP=74;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,22,15,25;MQ=60;FQ=225;PV4=0.81,0.025,1,0.33 GT:PL:GQ 0/1:255,0,255:99 chr1 207784968 . A G 168 . DP=119;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,27,33,26;MQ=60;FQ=171;PV4=0.71,1.4e-39,1,0.24 GT:PL:GQ 0/1:198,0,255:99 chr1 207790088 . C G 158 . DP=83;VDB=0.0393;AF1=0.5;AC1=1;DP4=18,22,22,19;MQ=59;FQ=161;PV4=0.51,6.1e-21,1,0.24 GT:PL:GQ 0/1:188,0,255:99 chr1 207795320 . A G 204 . DP=35;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,6,12,3;MQ=59;FQ=207;PV4=0.7,1,1,1 GT:PL:GQ 0/1:234,0,255:99 chr1 207812791 . A G 24 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:56,9,0:15 chr1 207850717 . G A 222 . DP=28;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,21,3;MQ=56;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 207851611 . A G 222 . DP=102;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,35,62;MQ=58;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 207857254 . A G 222 . DP=159;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,70,88;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 207872507 . G A 141 . DP=9;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,9,0;MQ=59;FQ=-54 GT:PL:GQ 1/1:174,27,0:51 chr1 207875116 . GAGAAGA GAGA 214 . INDEL;DP=16;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,10;MQ=60;FQ=-70.5 GT:PL:GQ 1/1:255,36,0:69 chr1 207888739 . G T 152 . DP=29;VDB=0.0140;AF1=1;AC1=2;DP4=0,2,7,19;MQ=56;FQ=-59;PV4=1,0.00011,1,0.19 GT:PL:GQ 1/1:185,32,0:61 chr1 207941191 . G T 100 . DP=21;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,4,15;MQ=60;FQ=-84 GT:PL:GQ 1/1:133,57,0:99 chr1 208050301 . A G 225 . DP=98;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,26,20,23;MQ=59;FQ=225;PV4=0.84,0.43,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 208050360 . G A 136 . DP=83;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,37,6,28;MQ=59;FQ=139;PV4=0.78,7.6e-24,1,1 GT:PL:GQ 0/1:166,0,255:99 chr1 208062260 . T C 75 . DP=12;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,9;MQ=60;FQ=-60 GT:PL:GQ 1/1:108,33,0:63 chr1 208062973 . A T 165 . DP=71;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,20,18,14;MQ=60;FQ=168;PV4=0.47,2.8e-23,1,1 GT:PL:GQ 0/1:195,0,255:99 chr1 208063067 . G A 225 . DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,15,10,16;MQ=60;FQ=225;PV4=1,0.028,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 208070983 . C A 225 . DP=36;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,10,5,14;MQ=60;FQ=220;PV4=1,0.056,1,0.18 GT:PL:GQ 0/1:255,0,248:99 chr1 208072626 . A C 27 . DP=11;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,2,0,8;MQ=58;FQ=16.9;PV4=1,5e-07,0.32,0.12 GT:PL:GQ 0/1:57,0,44:47 chr1 208200737 . C G 115 . DP=33;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,12,6,8;MQ=60;FQ=118;PV4=0.72,3.7e-10,1,0.47 GT:PL:GQ 0/1:145,0,255:99 chr1 208204794 . CTGTTTGTT CTGTT 83.5 . INDEL;DP=10;VDB=0.0019;AF1=0.5;AC1=1;DP4=6,0,4,0;MQ=55;FQ=86.5;PV4=1,7.1e-08,0.03,0.45 GT:PL:GQ 0/1:121,0,214:99 chr1 208207839 . G A 109 . DP=20;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,1,8,0;MQ=59;FQ=112;PV4=1,1,1,1 GT:PL:GQ 0/1:139,0,174:99 chr1 208208034 . G C 24 . DP=15;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,7,1,6;MQ=60;FQ=27;PV4=1,5.4e-10,1,0.23 GT:PL:GQ 0/1:54,0,174:57 chr1 208212397 . A G 44.1 . DP=14;VDB=0.0033;AF1=0.5163;AC1=1;DP4=0,2,0,12;MQ=60;FQ=-15.1;PV4=1,0.055,1,0.27 GT:PL:GQ 0/1:74,0,12:15 chr1 208213125 . A G 222 . DP=84;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,41,42;MQ=59;FQ=-277 GT:PL:GQ 1/1:255,250,0:99 chr1 208219164 . A C 36 . DP=12;VDB=0.0189;AF1=0.5;AC1=1;DP4=9,0,3,0;MQ=60;FQ=39;PV4=1,1,1,0.42 GT:PL:GQ 0/1:66,0,153:69 chr1 208225909 . G A 159 . DP=15;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,7,2,6;MQ=60;FQ=108;PV4=0.47,1,1,1 GT:PL:GQ 0/1:189,0,135:99 chr1 208233984 . C G 57 . DP=13;VDB=0.0066;AF1=0.5;AC1=1;DP4=3,0,9,0;MQ=60;FQ=35;PV4=1,4.4e-05,1,1 GT:PL:GQ 0/1:87,0,62:65 chr1 208233998 . C T 39 . DP=19;VDB=0.0066;AF1=0.5;AC1=1;DP4=6,3,10,0;MQ=59;FQ=42;PV4=0.087,0.00013,1,1 GT:PL:GQ 0/1:69,0,174:72 chr1 208255877 . T C 222 . DP=24;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,21;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr1 208276399 . CCTCTCTCT CCTCTCTCTCTCT 214 . INDEL;DP=70;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,56,14;MQ=53;FQ=-231 GT:PL:GQ 1/1:255,196,0:99 chr1 208390086 . G C 222 . DP=52;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,29,19;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 208391254 . C T 204 . DP=37;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,6,30;MQ=58;FQ=-135 GT:PL:GQ 1/1:237,108,0:99 chr1 209782545 . A G 5.46 . DP=10;VDB=0.0161;AF1=0.4999;AC1=1;DP4=0,6,1,3;MQ=60;FQ=7.8;PV4=0.4,2.6e-05,1,1 GT:PL:GQ 0/1:34,0,131:34 chr1 209784927 . G T 115 . DP=33;VDB=0.0099;AF1=0.5;AC1=1;DP4=2,19,0,12;MQ=59;FQ=118;PV4=0.52,1,1,1 GT:PL:GQ 0/1:145,0,235:99 chr1 209785206 . G A 225 . DP=73;VDB=0.0399;AF1=0.5;AC1=1;DP4=27,9,25,10;MQ=60;FQ=225;PV4=0.79,0.16,1,0.14 GT:PL:GQ 0/1:255,0,255:99 chr1 209786078 . G A 153 . DP=36;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,9,13,7;MQ=60;FQ=156;PV4=0.16,5.4e-08,1,1 GT:PL:GQ 0/1:183,0,232:99 chr1 209788703 . T C 180 . DP=51;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,16,9,19;MQ=59;FQ=183;PV4=1,2.7e-10,1,0.13 GT:PL:GQ 0/1:210,0,255:99 chr1 209792015 . AC ACC 208 . INDEL;DP=42;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,16,2,20;MQ=60;FQ=156;PV4=1,1,1,1 GT:PL:GQ 0/1:246,0,191:99 chr1 209799253 . A G 222 . DP=46;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,27;MQ=59;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 209800976 . C T 46 . DP=46;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,18,4,13;MQ=59;FQ=49;PV4=0.74,3.2e-11,1,1 GT:PL:GQ 0/1:76,0,255:79 chr1 209804095 . G A 151 . DP=10;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:184,30,0:57 chr1 209811886 . T G 198 . DP=43;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,29,14;MQ=60;FQ=-156 GT:PL:GQ 1/1:231,129,0:99 chr1 209812063 . T C 20 . DP=11;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,3,0,7;MQ=60;FQ=23;PV4=0.36,4.7e-09,1,1 GT:PL:GQ 0/1:50,0,100:53 chr1 209849002 . T C 70 . DP=34;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,2,17,0;MQ=60;FQ=73;PV4=0.23,4.9e-10,1,1 GT:PL:GQ 0/1:100,0,212:99 chr1 209849399 . AG A 71.5 . INDEL;DP=9;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,3,1,4;MQ=58;FQ=73.7;PV4=1,0.037,0.2,1 GT:PL:GQ 0/1:109,0,116:99 chr1 209849406 . T G 93 . DP=8;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,2,6;MQ=58;FQ=-51 GT:PL:GQ 1/1:126,24,0:45 chr1 209948711 . A C 148 . DP=54;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,3,26,7;MQ=60;FQ=151;PV4=0.72,7.1e-17,0.22,0.022 GT:PL:GQ 0/1:178,0,227:99 chr1 209950681 . T C 51 . DP=10;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,1,4,3;MQ=60;FQ=18.1;PV4=1,0.00036,1,1 GT:PL:GQ 0/1:81,0,45:48 chr1 209950760 . C G 182 . DP=21;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,7;MQ=60;FQ=-90 GT:PL:GQ 1/1:215,63,0:99 chr1 209950848 . G A 65 . DP=24;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,8,6,5;MQ=59;FQ=68;PV4=0.68,1.1e-09,1,1 GT:PL:GQ 0/1:95,0,246:98 chr1 209951400 . C G 225 . DP=103;VDB=0.0380;AF1=0.5;AC1=1;DP4=43,15,33,8;MQ=59;FQ=225;PV4=0.63,1,1,0.47 GT:PL:GQ 0/1:255,0,255:99 chr1 209952865 . C G 121 . DP=19;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,8,0,9;MQ=60;FQ=124;PV4=1,1,1,1 GT:PL:GQ 0/1:151,0,168:99 chr1 209954893 . G T 9.52 . DP=10;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,8,1,1;MQ=58;FQ=12.3;PV4=0.2,0.44,1,0.038 GT:PL:GQ 0/1:39,0,140:41 chr1 209956542 . C A 109 . DP=51;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,7,18,11;MQ=60;FQ=112;PV4=0.77,2.1e-22,1,1 GT:PL:GQ 0/1:139,0,255:99 chr1 209963803 . G A 6.98 . DP=8;VDB=0.0220;AF1=0.4999;AC1=1;DP4=4,0,3,0;MQ=60;FQ=9.53;PV4=1,0.0077,1,1 GT:PL:GQ 0/1:36,0,94:37 chr1 209965587 . G C 91 . DP=59;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,11,23,4;MQ=59;FQ=94;PV4=0.13,2.2e-25,1,0.3 GT:PL:GQ 0/1:121,0,255:99 chr1 209968684 . C A 225 . DP=64;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,20,17,17;MQ=60;FQ=225;PV4=0.12,1,0.18,1 GT:PL:GQ 0/1:255,0,255:99 chr1 209969902 . G C 52 . DP=8;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,2,0,3;MQ=60;FQ=54;PV4=1,1,1,0.43 GT:PL:GQ 0/1:82,0,88:84 chr1 210001586 . A G 100 . DP=14;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,14;MQ=57;FQ=-69 GT:PL:GQ 1/1:133,42,0:81 chr1 210003388 . A C 58 . DP=16;VDB=0.0025;AF1=0.5;AC1=1;DP4=8,0,6,2;MQ=60;FQ=61;PV4=0.47,1.1e-08,1,1 GT:PL:GQ 0/1:88,0,146:91 chr1 210003402 . T C 131 . DP=19;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,15,4;MQ=60;FQ=-84 GT:PL:GQ 1/1:164,57,0:99 chr1 210004199 . C G 222 . DP=53;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,31,16;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 210004332 . G A 187 . DP=133;VDB=0.0392;AF1=0.5;AC1=1;DP4=31,30,40,30;MQ=60;FQ=190;PV4=0.49,5.2e-42,1,0.4 GT:PL:GQ 0/1:217,0,255:99 chr1 210006603 . C T 154 . DP=71;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,51,12;MQ=60;FQ=-217 GT:PL:GQ 1/1:187,190,0:99 chr1 210008367 . C G 183 . DP=20;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,17,0;MQ=60;FQ=-78 GT:PL:GQ 1/1:216,51,0:99 chr1 210008673 . T G 60 . DP=9;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:93,24,0:45 chr1 210012102 . A G 49 . DP=9;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:82,27,0:51 chr1 210016709 . A T 42 . DP=34;VDB=0.0025;AF1=0.5;AC1=1;DP4=21,0,12,0;MQ=60;FQ=45;PV4=1,1.3e-12,1,0.17 GT:PL:GQ 0/1:72,0,185:75 chr1 210111733 . G A 4.13 . DP=11;VDB=0.0313;AF1=0.4998;AC1=1;DP4=1,6,0,4;MQ=60;FQ=6.2;PV4=1,1.9e-05,1,1 GT:PL:GQ 0/1:32,0,142:31 chr1 210407031 . G T 222 . DP=27;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,8;MQ=58;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 210536078 . C G 212 . DP=47;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,38,8;MQ=59;FQ=-165 GT:PL:GQ 1/1:245,138,0:99 chr1 210577873 . G C 167 . DP=9;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:200,24,0:45 chr1 210577884 . G A 22 . DP=12;VDB=0.0332;AF1=0.5;AC1=1;DP4=5,3,3,1;MQ=60;FQ=25;PV4=1,0.0015,1,1 GT:PL:GQ 0/1:52,0,180:55 chr1 210577901 . T C 94 . DP=14;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,2,6,3;MQ=60;FQ=89.2;PV4=1,6.7e-05,1,1 GT:PL:GQ 0/1:124,0,117:99 chr1 210686570 . A G 218 . DP=48;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,33;MQ=60;FQ=-171 GT:PL:GQ 1/1:251,144,0:99 chr1 210686614 . A G 137 . DP=24;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,14,1,8;MQ=60;FQ=140;PV4=1,1,1,1 GT:PL:GQ 0/1:167,0,200:99 chr1 210761462 . G C 86 . DP=15;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,15;MQ=60;FQ=-72 GT:PL:GQ 1/1:119,45,0:87 chr1 210856585 . G T 49 . DP=19;VDB=0.0140;AF1=0.5;AC1=1;DP4=9,3,7,0;MQ=59;FQ=52;PV4=0.26,0.0011,1,0.21 GT:PL:GQ 0/1:79,0,218:82 chr1 210857457 . A G 128 . DP=36;VDB=0.0140;AF1=0.5;AC1=1;DP4=10,14,2,9;MQ=60;FQ=131;PV4=0.26,0.08,1,0.18 GT:PL:GQ 0/1:158,0,255:99 chr1 210970823 . TG TGG 214 . INDEL;DP=34;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,31,3;MQ=60;FQ=-137 GT:PL:GQ 1/1:255,102,0:99 chr1 211264140 . A G 14.2 . DP=14;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,8,0,6;MQ=60;FQ=17.1;PV4=1,6.3e-11,1,1 GT:PL:GQ 0/1:44,0,153:47 chr1 211447625 . G A 212 . DP=31;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,13,17;MQ=59;FQ=-117 GT:PL:GQ 1/1:245,90,0:99 chr1 211452678 . G A 199 . DP=31;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,10,20;MQ=60;FQ=-117 GT:PL:GQ 1/1:232,90,0:99 chr1 211452728 . G A 166 . DP=13;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,13;MQ=59;FQ=-66 GT:PL:GQ 1/1:199,39,0:75 chr1 211527609 . C A 28.3 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:61,15,0:27 chr1 211846876 . A G 166 . DP=39;VDB=0.0398;AF1=0.5;AC1=1;DP4=16,10,4,7;MQ=59;FQ=169;PV4=0.28,1,1,1 GT:PL:GQ 0/1:196,0,255:99 chr1 212209367 . TCC TCCC 73.5 . INDEL;DP=11;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,4,0,5;MQ=60;FQ=42.5;PV4=1,1,1,0.47 GT:PL:GQ 0/1:111,0,77:80 chr1 212217971 . CT CTTT 24.5 . INDEL;DP=12;VDB=0.0053;AF1=0.5;AC1=1;DP4=8,2,2,0;MQ=58;FQ=27.5;PV4=1,1,1,1 GT:PL:GQ 0/1:62,0,255:65 chr1 212220847 . G A 11.3 . DP=11;VDB=0.0196;AF1=0.5;AC1=1;DP4=0,9,0,2;MQ=60;FQ=14.2;PV4=1,1,1,1 GT:PL:GQ 0/1:41,0,161:43 chr1 212236157 . G T 94 . DP=39;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,34,2;MQ=59;FQ=-135 GT:PL:GQ 1/1:127,108,0:99 chr1 212251103 . A G 106 . DP=6;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:139,15,0:27 chr1 212251402 . G A 109 . DP=45;VDB=0.0118;AF1=0.5;AC1=1;DP4=20,6,13,5;MQ=60;FQ=112;PV4=0.74,6.2e-15,1,0.46 GT:PL:GQ 0/1:139,0,255:99 chr1 212273639 . C T 222 . DP=71;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,18,47;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr1 212274413 . A C 168 . DP=36;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,7,28;MQ=59;FQ=-132 GT:PL:GQ 1/1:201,105,0:99 chr1 212475573 . T C 133 . DP=29;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,5,5,12;MQ=60;FQ=136;PV4=0.25,3.1e-11,1,1 GT:PL:GQ 0/1:163,0,219:99 chr1 212515613 . C T 186 . DP=52;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,16,34;MQ=60;FQ=-178 GT:PL:GQ 1/1:219,151,0:99 chr1 212521639 . T G 222 . DP=120;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,83,31;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 212526288 . C T 222 . DP=118;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,43,68;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 212530192 . T C 6.79 . DP=4;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:37,6,0:7 chr1 212553111 . G C 25 . DP=5;VDB=0.0188;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=28;PV4=1,1,1,0.0048 GT:PL:GQ 0/1:55,0,82:58 chr1 212560327 . A G 159 . DP=93;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,32,60;MQ=60;FQ=-282 GT:PL:GQ 1/1:192,255,0:99 chr1 212588167 . G T 141 . DP=35;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,11,5,12;MQ=59;FQ=144;PV4=0.7,8.1e-07,0.19,0.25 GT:PL:GQ 0/1:171,0,225:99 chr1 212588206 . C G 23 . DP=8;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,4,2,2;MQ=57;FQ=26;PV4=0.43,3.2e-05,1,0.34 GT:PL:GQ 0/1:53,0,87:56 chr1 212615875 . T C 53 . DP=48;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,10,10,8;MQ=60;FQ=56;PV4=0.54,1.4e-16,1,1 GT:PL:GQ 0/1:83,0,255:86 chr1 212617829 . C G 45 . DP=18;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,10,0,8;MQ=60;FQ=48;PV4=1,2.7e-08,1,1 GT:PL:GQ 0/1:75,0,161:78 chr1 212619339 . T C 225 . DP=34;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,10,5,14;MQ=60;FQ=199;PV4=1,0.18,1,1 GT:PL:GQ 0/1:255,0,226:99 chr1 212799870 . A G 172 . DP=40;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,22,15;MQ=60;FQ=-138 GT:PL:GQ 1/1:205,111,0:99 chr1 212799949 . C T 222 . DP=46;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,20;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 212900487 . A G 148 . DP=20;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,14,4;MQ=60;FQ=-81 GT:PL:GQ 1/1:181,54,0:99 chr1 212960866 . C T 107 . DP=32;VDB=0.0190;AF1=0.5;AC1=1;DP4=9,1,16,6;MQ=59;FQ=110;PV4=0.39,1.6e-17,1,0.39 GT:PL:GQ 0/1:137,0,158:99 chr1 212965149 . C A 15.1 . DP=8;VDB=0.0145;AF1=0.5;AC1=1;DP4=1,5,0,2;MQ=60;FQ=18.1;PV4=1,1,1,1 GT:PL:GQ 0/1:45,0,150:48 chr1 212970375 . A G 149 . DP=21;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,18,3;MQ=60;FQ=-90 GT:PL:GQ 1/1:182,63,0:99 chr1 213003571 . C G 17.1 . DP=3;VDB=0.0092;AF1=0.5025;AC1=1;DP4=0,1,1,1;MQ=60;FQ=-7.79;PV4=1,0.44,1,0.33 GT:PL:GQ 0/1:47,0,20:23 chr1 213009469 . A G 160 . DP=56;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,20,9,20;MQ=60;FQ=163;PV4=0.34,1.8e-16,1,1 GT:PL:GQ 0/1:190,0,255:99 chr1 213046236 . G A 44 . DP=6;VDB=0.0001;AF1=0.5032;AC1=1;DP4=0,1,0,5;MQ=60;FQ=-8.63;PV4=1,0.016,1,0.38 GT:PL:GQ 0/1:74,0,19:22 chr1 213056819 . A G 145 . DP=34;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,19,15;MQ=60;FQ=-129 GT:PL:GQ 1/1:178,102,0:99 chr1 213061362 . T A 51 . DP=27;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,8,4,7;MQ=60;FQ=54;PV4=0.7,1.1e-11,1,1 GT:PL:GQ 0/1:81,0,255:84 chr1 213068192 . T C 12.7 . DP=7;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:45,12,0:18 chr1 213068233 . C T 128 . DP=16;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,0,7,1;MQ=60;FQ=113;PV4=1,0.013,1,0.15 GT:PL:GQ 0/1:158,0,140:99 chr1 213068404 . T C 145 . DP=11;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,3,2,5;MQ=58;FQ=71;PV4=1,1,0.24,1 GT:PL:GQ 0/1:175,0,98:99 chr1 213068436 . A G 84 . DP=6;VDB=0.0059;AF1=0.5;AC1=1;DP4=1,1,1,3;MQ=57;FQ=35;PV4=1,0.00092,0.27,0.27 GT:PL:GQ 0/1:114,0,62:65 chr1 213068456 . T A 11.3 . DP=5;VDB=0.0080;AF1=0.5;AC1=1;DP4=1,1,1,2;MQ=56;FQ=14.2;PV4=1,0.00056,0.25,1 GT:PL:GQ 0/1:41,0,64:43 chr1 213068542 . CTGATTG CTGATTGATTG 217 . INDEL;DP=47;VDB=0.0298;AF1=0.5;AC1=1;DP4=22,6,17,2;MQ=58;FQ=217;PV4=0.44,1,0.0069,1 GT:PL:GQ 0/1:255,0,255:99 chr1 213124871 . G A 60 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:92,9,0:16 chr1 213139748 . T G 57 . DP=17;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,6,2,8;MQ=59;FQ=60;PV4=0.5,2.4e-08,0.23,1 GT:PL:GQ 0/1:87,0,117:90 chr1 213140362 . G A 30 . DP=10;VDB=0.0042;AF1=0.5;AC1=1;DP4=3,1,6,0;MQ=60;FQ=33;PV4=0.4,6e-06,1,1 GT:PL:GQ 0/1:60,0,108:63 chr1 213140398 . A C 31 . DP=28;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,1,13,0;MQ=60;FQ=34;PV4=1,1.4e-12,1,1 GT:PL:GQ 0/1:61,0,197:64 chr1 213146944 . A G 16.1 . DP=18;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,9,0,7;MQ=60;FQ=19.1;PV4=1,5.8e-10,1,0.43 GT:PL:GQ 0/1:46,0,188:49 chr1 213178340 . G A 55 . DP=13;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,0,4,0;MQ=60;FQ=58;PV4=1,1,1,1 GT:PL:GQ 0/1:85,0,154:88 chr1 213224719 . T C 86 . DP=10;VDB=0.0081;AF1=0.5;AC1=1;DP4=3,0,4,1;MQ=60;FQ=15.1;PV4=1,1,1,0.13 GT:PL:GQ 0/1:116,0,42:45 chr1 213405414 . Ggcaactgaggatgcaactgaggat Ggcaactgaggat 9.04 . INDEL;DP=23;VDB=0.0140;AF1=0.5;AC1=1;DP4=16,2,5,0;MQ=54;FQ=11.8;PV4=1,6.7e-28,8.5e-09,1 GT:PL:GQ 0/1:46,0,255:48 chr1 214478459 . G A 225 . DP=76;VDB=0.0400;AF1=0.5;AC1=1;DP4=24,6,26,17;MQ=60;FQ=225;PV4=0.12,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 214492286 . G A 171 . DP=85;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,35,47;MQ=59;FQ=-274 GT:PL:GQ 1/1:204,247,0:99 chr1 214503489 . T G 138 . DP=76;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,21,20,14;MQ=60;FQ=141;PV4=0.35,2e-29,1,1 GT:PL:GQ 0/1:168,0,255:99 chr1 214504604 . T C 75 . DP=23;VDB=0.0099;AF1=0.5;AC1=1;DP4=2,6,4,10;MQ=59;FQ=78;PV4=1,5.7e-12,1,1 GT:PL:GQ 0/1:105,0,156:99 chr1 214505640 . A G 29 . DP=8;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=60;FQ=31.9;PV4=1,7.2e-05,1,1 GT:PL:GQ 0/1:59,0,75:62 chr1 214507580 . A G 225 . DP=20;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,4,8,5;MQ=60;FQ=130;PV4=0.64,0.35,1,0.39 GT:PL:GQ 0/1:255,0,157:99 chr1 214531239 . C T 3.54 . DP=7;VDB=0.0143;AF1=0.4998;AC1=1;DP4=2,1,3,1;MQ=60;FQ=5.47;PV4=1,4.3e-05,1,1 GT:PL:GQ 0/1:31,0,85:30 chr1 214542819 . T C 193 . DP=141;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,88,45;MQ=59;FQ=-282 GT:PL:GQ 1/1:226,255,0:99 chr1 214551276 . G A 74 . DP=12;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:107,36,0:69 chr1 214564177 . C T 225 . DP=59;VDB=0.0244;AF1=0.5;AC1=1;DP4=17,7,26,9;MQ=60;FQ=225;PV4=0.77,0.083,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 214564191 . A C 173 . DP=82;VDB=0.0345;AF1=0.5;AC1=1;DP4=29,10,31,12;MQ=60;FQ=176;PV4=1,7.4e-19,1,1 GT:PL:GQ 0/1:203,0,255:99 chr1 214564340 . T C 222 . DP=92;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,19,70;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 214566952 . A G 161 . DP=18;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,11,6;MQ=60;FQ=-78 GT:PL:GQ 1/1:194,51,0:99 chr1 214567013 . CGGGGGGG CGGGGGG 76.5 . INDEL;DP=28;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,17,9;MQ=60;FQ=-113 GT:PL:GQ 1/1:117,78,0:99 chr1 214571251 . A C 124 . DP=144;VDB=0.0244;AF1=0.5;AC1=1;DP4=67,14,52,9;MQ=59;FQ=127;PV4=0.82,4.1e-51,1,1 GT:PL:GQ 0/1:154,0,255:99 chr1 214575183 . AT A 217 . INDEL;DP=45;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,21,4,19;MQ=60;FQ=182;PV4=0.35,5.3e-07,1,0.27 GT:PL:GQ 0/1:255,0,217:99 chr1 214638172 . C T 168 . DP=40;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,6,31;MQ=60;FQ=-138 GT:PL:GQ 1/1:201,111,0:99 chr1 214787130 . G A 48 . DP=30;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,6,10,1;MQ=60;FQ=51;PV4=0.19,2.6e-08,1,1 GT:PL:GQ 0/1:78,0,255:81 chr1 214791895 . T C 112 . DP=98;VDB=0.0298;AF1=0.5;AC1=1;DP4=33,15,27,20;MQ=60;FQ=115;PV4=0.29,1.4e-49,1,1 GT:PL:GQ 0/1:142,0,255:99 chr1 214814571 . C T 23 . DP=28;VDB=0.0343;AF1=0.5;AC1=1;DP4=12,7,4,4;MQ=59;FQ=26;PV4=0.68,2.4e-08,1,0.35 GT:PL:GQ 0/1:53,0,255:56 chr1 214820099 . A G 95 . DP=48;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,16,9,16;MQ=60;FQ=98;PV4=0.55,8.3e-24,1,0.15 GT:PL:GQ 0/1:125,0,255:99 chr1 214826196 . G A 118 . DP=22;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,2,9,4;MQ=60;FQ=121;PV4=1,1.7e-08,1,0.25 GT:PL:GQ 0/1:148,0,161:99 chr1 214826364 . G A 103 . DP=30;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,8,6,13;MQ=60;FQ=106;PV4=0.67,1.3e-13,1,1 GT:PL:GQ 0/1:133,0,172:99 chr1 214828812 . A G 205 . DP=57;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,29,3,20;MQ=60;FQ=208;PV4=1,0.21,1,1 GT:PL:GQ 0/1:235,0,255:99 chr1 214830617 . A G 183 . DP=122;VDB=0.0345;AF1=0.5;AC1=1;DP4=28,23,36,32;MQ=60;FQ=186;PV4=0.85,3.1e-32,0.11,1 GT:PL:GQ 0/1:213,0,255:99 chr1 214837110 . C G 60 . DP=24;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,12,2,10;MQ=59;FQ=63;PV4=0.48,8.8e-17,1,1 GT:PL:GQ 0/1:90,0,168:93 chr1 215368514 . A G 31.8 . DP=2;VDB=0.0165;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:63,6,0:10 chr1 215408057 . G T 66 . DP=5;VDB=0.0033;AF1=0.5006;AC1=1;DP4=1,0,2,1;MQ=60;FQ=-3.53;PV4=1,1,1,0.42 GT:PL:GQ 0/1:96,0,26:29 chr1 215741053 . T G 112 . DP=21;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,1,10,2;MQ=60;FQ=105;PV4=1,2.7e-05,1,1 GT:PL:GQ 0/1:142,0,132:99 chr1 215753355 . T G 142 . DP=54;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,22,6,23;MQ=60;FQ=145;PV4=0.48,1.9e-21,1,0.11 GT:PL:GQ 0/1:172,0,255:99 chr1 215781574 . A G 116 . DP=13;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,5,0,8;MQ=60;FQ=77;PV4=1,1,1,1 GT:PL:GQ 0/1:146,0,104:99 chr1 215793834 . G A 225 . DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,8,16,10;MQ=59;FQ=225;PV4=0.76,1,0.12,1 GT:PL:GQ 0/1:255,0,255:99 chr1 215848062 . C T 66 . DP=29;VDB=0.0373;AF1=0.5;AC1=1;DP4=5,11,2,9;MQ=60;FQ=69;PV4=0.66,4.9e-10,1,1 GT:PL:GQ 0/1:96,0,255:99 chr1 215848641 . T C 180 . DP=163;VDB=0.0365;AF1=0.5;AC1=1;DP4=46,40,34,39;MQ=60;FQ=183;PV4=0.43,1.6e-39,0.45,1 GT:PL:GQ 0/1:210,0,255:99 chr1 215853748 . GTTTTTTTTTTTT GTTTTTTTTTTT 24.5 . INDEL;DP=41;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,3,28;MQ=59;FQ=-128 GT:PL:GQ 1/1:65,93,0:99 chr1 215914646 . T A 20 . DP=4;VDB=0.0178;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=22.8;PV4=1,0.15,1,0.23 GT:PL:GQ 0/1:50,0,62:53 chr1 215914826 . T C 116 . DP=61;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,27,7,15;MQ=60;FQ=119;PV4=1,2e-15,1,0.4 GT:PL:GQ 0/1:146,0,255:99 chr1 215916563 . G A 153 . DP=59;VDB=0.0345;AF1=0.5;AC1=1;DP4=20,9,17,11;MQ=60;FQ=156;PV4=0.59,1.5e-27,1,1 GT:PL:GQ 0/1:183,0,255:99 chr1 215956304 . A G 5.46 . DP=13;VDB=0.0081;AF1=0.4999;AC1=1;DP4=2,5,0,6;MQ=60;FQ=7.8;PV4=0.46,9.8e-10,1,1 GT:PL:GQ 0/1:34,0,172:34 chr1 215960167 . T G 67 . DP=45;VDB=0.0384;AF1=0.5;AC1=1;DP4=1,19,0,24;MQ=59;FQ=70;PV4=0.45,1.2e-15,0.18,0.34 GT:PL:GQ 0/1:97,0,206:99 chr1 216219781 . A G 222 . DP=32;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,23,8;MQ=59;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 216246675 . AGGG AGG 119 . INDEL;DP=28;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,10,1,11;MQ=60;FQ=117;PV4=1,2.3e-13,1,1 GT:PL:GQ 0/1:157,0,153:99 chr1 216258194 . G T 181 . DP=32;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,11,1,18;MQ=60;FQ=154;PV4=1,0.27,1,0.45 GT:PL:GQ 0/1:211,0,181:99 chr1 216258213 . A G 28 . DP=25;VDB=0.0019;AF1=0.5;AC1=1;DP4=1,14,0,10;MQ=60;FQ=31;PV4=1,3.8e-12,1,1 GT:PL:GQ 0/1:58,0,207:61 chr1 216270618 . G A 152 . DP=38;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,19,1,15;MQ=59;FQ=155;PV4=0.62,0.026,0.12,0.42 GT:PL:GQ 0/1:182,0,255:99 chr1 216370108 . C T 70 . DP=19;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,9,1,9;MQ=60;FQ=73;PV4=1,5.6e-10,1,1 GT:PL:GQ 0/1:100,0,149:99 chr1 216370130 . T G 46 . DP=10;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,4,1,5;MQ=60;FQ=48.9;PV4=1,5.4e-05,1,1 GT:PL:GQ 0/1:76,0,92:79 chr1 216371934 . A C 19.1 . DP=13;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,7,0,6;MQ=60;FQ=22;PV4=1,1.9e-06,1,0.23 GT:PL:GQ 0/1:49,0,138:52 chr1 216462662 . T A 182 . DP=132;VDB=0.0380;AF1=0.5;AC1=1;DP4=32,24,49,24;MQ=59;FQ=185;PV4=0.27,2.6e-37,1,1 GT:PL:GQ 0/1:212,0,255:99 chr1 216495191 . T G 4.13 . DP=28;VDB=0.0019;AF1=0.4998;AC1=1;DP4=12,0,10,0;MQ=60;FQ=6.2;PV4=1,5.8e-11,1,1 GT:PL:GQ 0/1:32,0,168:31 chr1 216495400 . A G 225 . DP=70;VDB=0.0190;AF1=0.5;AC1=1;DP4=7,30,4,28;MQ=59;FQ=225;PV4=0.53,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 216496947 . G A 105 . DP=119;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,31,23,38;MQ=60;FQ=108;PV4=0.46,5.8e-48,1,1 GT:PL:GQ 0/1:135,0,255:99 chr1 216497469 . CCAATCA CCA 171 . INDEL;DP=12;VDB=0.0066;AF1=0.5;AC1=1;DP4=4,0,7,1;MQ=49;FQ=120;PV4=1,3.4e-11,0.02,0.13 GT:PL:GQ 0/1:209,0,155:99 chr1 216500830 . G C 86 . DP=27;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,20,0;MQ=59;FQ=-87 GT:PL:GQ 1/1:119,60,0:99 chr1 216538507 . A G 29 . DP=5;VDB=0.0126;AF1=0.501;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-4.76;PV4=1,0.0035,1,1 GT:PL:GQ 0/1:59,0,24:27 chr1 216692669 . C T 222 . DP=33;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,22;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 216741314 . C T 148 . DP=46;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,7,12,2;MQ=59;FQ=151;PV4=0.69,0.33,0.076,1 GT:PL:GQ 0/1:178,0,255:99 chr1 217604777 . G A 38 . DP=15;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,6,0,7;MQ=60;FQ=41;PV4=0.47,3.7e-09,1,0.35 GT:PL:GQ 0/1:68,0,188:71 chr1 217804325 . G A 152 . DP=88;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,36,16,20;MQ=60;FQ=155;PV4=0.059,2.1e-17,1,1 GT:PL:GQ 0/1:182,0,255:99 chr1 217947738 . G A 110 . DP=75;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,10,26,14;MQ=60;FQ=113;PV4=1,3.3e-29,1,0.21 GT:PL:GQ 0/1:140,0,255:99 chr1 218475533 . C T 56 . DP=5;VDB=0.0116;AF1=0.5;AC1=1;DP4=1,1,2,1;MQ=60;FQ=34;PV4=1,0.3,1,1 GT:PL:GQ 0/1:86,0,61:64 chr1 219383848 . ACTTTT ACTTTTTCTTTT 32.4 . INDEL;DP=4;VDB=0.0143;AF1=1;AC1=2;DP4=0,0,3,0;MQ=29;FQ=-43.5 GT:PL:GQ 1/1:72,9,0:16 chr1 219383867 . T C 49 . DP=8;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,1;MQ=39;FQ=-51 GT:PL:GQ 1/1:82,24,0:45 chr1 219383905 . A G 222 . DP=12;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,6,6;MQ=47;FQ=-63 GT:PL:GQ 1/1:255,36,0:69 chr1 219706327 . A G 160 . DP=43;VDB=0.0190;AF1=0.5;AC1=1;DP4=20,3,19,1;MQ=60;FQ=163;PV4=0.61,1,1,1 GT:PL:GQ 0/1:190,0,255:99 chr1 219783279 . T A 222 . DP=71;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,18,50;MQ=31;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr1 219783709 . G A 21.2 . DP=6;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,6,0;MQ=15;FQ=-45 GT:PL:GQ 1/1:54,18,0:31 chr1 220100497 . CAAAAAAAAA CAAAAAAAA 21.5 . INDEL;DP=16;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-79.5 GT:PL:GQ 1/1:62,45,0:63 chr1 220145371 . T G 75 . DP=11;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:108,30,0:57 chr1 220145637 . A G 136 . DP=6;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:169,18,0:33 chr1 220153332 . TAA TAAAA 214 . INDEL;DP=27;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,24,3;MQ=60;FQ=-116 GT:PL:GQ 1/1:255,81,0:99 chr1 220154659 . TAAAAAAAAAAAAAAAAA TAAAAAAAAAAAAAA 13.2 . INDEL;DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,4,0;MQ=54;FQ=-46.5 GT:PL:GQ 1/1:53,12,0:19 chr1 220154768 . C T 222 . DP=61;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,36,22;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 220156090 . T C 172 . DP=84;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,54,26;MQ=60;FQ=-268 GT:PL:GQ 1/1:205,241,0:99 chr1 220160360 . A G 168 . DP=13;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:201,39,0:75 chr1 220160433 . A G 222 . DP=50;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,32,14;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 220162195 . T C 139 . DP=9;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:172,24,0:45 chr1 220178717 . TAAA TAAAA 214 . INDEL;DP=25;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,10,15;MQ=59;FQ=-110 GT:PL:GQ 1/1:255,75,0:99 chr1 220192495 . C G 186 . DP=23;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,21;MQ=60;FQ=-90 GT:PL:GQ 1/1:219,63,0:99 chr1 220197545 . C T 182 . DP=19;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,18,0;MQ=60;FQ=-81 GT:PL:GQ 1/1:215,54,0:99 chr1 220197625 . G T 222 . DP=85;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,58,24;MQ=60;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr1 220205943 . G A 83 . DP=17;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,16;MQ=60;FQ=-78 GT:PL:GQ 1/1:116,51,0:99 chr1 220205980 . A C 18 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:50,9,0:15 chr1 220207017 . C T 204 . DP=12;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-63 GT:PL:GQ 1/1:237,36,0:69 chr1 220208154 . C A 119 . DP=18;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,16,1;MQ=60;FQ=-78 GT:PL:GQ 1/1:152,51,0:99 chr1 220239448 . T C,A 130 . DP=59;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,8,43;MQ=60;FQ=-178 GT:PL:GQ 1/1:163,151,0,165,136,162:99 chr1 220240862 . A G 178 . DP=28;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,6,21;MQ=60;FQ=-108 GT:PL:GQ 1/1:211,81,0:99 chr1 220321023 . A G 222 . DP=48;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,16,30;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 220331319 . T G 87 . DP=18;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,16;MQ=59;FQ=-78 GT:PL:GQ 1/1:120,51,0:99 chr1 220332552 . C T 59.1 . DP=8;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:92,21,0:39 chr1 220335430 . A G 11.1 . DP=3;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr1 220355433 . CTT CT 24.2 . INDEL;DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:63,6,0:10 chr1 220375728 . A G 127 . DP=29;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,5,24;MQ=60;FQ=-114 GT:PL:GQ 1/1:160,87,0:99 chr1 220406291 . A G 111 . DP=13;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:144,33,0:63 chr1 220603310 . tgtgag tg 214 . INDEL;DP=20;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-76.5 GT:PL:GQ 1/1:255,42,0:81 chr1 220607685 . G A 167 . DP=42;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,20,18;MQ=60;FQ=-141 GT:PL:GQ 1/1:200,114,0:99 chr1 220607891 . A G 148 . DP=28;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,24,4;MQ=60;FQ=-111 GT:PL:GQ 1/1:181,84,0:99 chr1 220789236 . C T 222 . DP=25;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,15,10;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 220808921 . T C 194 . DP=87;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,13,68;MQ=60;FQ=-271 GT:PL:GQ 1/1:227,244,0:99 chr1 220825523 . A G 222 . DP=17;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,3,13;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 220864062 . C A 114 . DP=22;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,4,4,7;MQ=60;FQ=117;PV4=0.39,1.6e-05,1,1 GT:PL:GQ 0/1:144,0,209:99 chr1 220970028 . A G 222 . DP=46;VDB=0.0081;AF1=0.5;AC1=1;DP4=17,7,15,4;MQ=59;FQ=223;PV4=0.73,1,1,0.13 GT:PL:GQ 0/1:252,0,255:99 chr1 220986516 . C G 6.79 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:37,6,0:7 chr1 221053545 . T C 85 . DP=28;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,7,6,5;MQ=60;FQ=88;PV4=1,4.3e-06,1,0.39 GT:PL:GQ 0/1:115,0,253:99 chr1 221054761 . C G 188 . DP=30;VDB=0.0140;AF1=0.5;AC1=1;DP4=3,6,1,20;MQ=60;FQ=146;PV4=0.069,1,1,0.22 GT:PL:GQ 0/1:218,0,173:99 chr1 221055463 . G A 188 . DP=116;VDB=0.0399;AF1=0.5;AC1=1;DP4=24,36,21,33;MQ=60;FQ=191;PV4=1,5.8e-16,0.067,0.084 GT:PL:GQ 0/1:218,0,255:99 chr1 221057646 . C T 132 . DP=44;VDB=0.0384;AF1=0.5;AC1=1;DP4=7,10,13,10;MQ=60;FQ=135;PV4=0.52,2.4e-11,1,1 GT:PL:GQ 0/1:162,0,255:99 chr1 221057662 . G A 166 . DP=40;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,7,17,10;MQ=60;FQ=169;PV4=0.5,9.2e-09,1,0.056 GT:PL:GQ 0/1:196,0,208:99 chr1 221507141 . C T 102 . DP=30;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,26,3;MQ=60;FQ=-114 GT:PL:GQ 1/1:135,87,0:99 chr1 221912361 . T C 150 . DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,7,14,10;MQ=60;FQ=153;PV4=1,4.6e-07,1,1 GT:PL:GQ 0/1:180,0,248:99 chr1 221912808 . T C 159 . DP=71;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,13,19,21;MQ=60;FQ=162;PV4=0.47,1.9e-17,1,1 GT:PL:GQ 0/1:189,0,255:99 chr1 222697088 . G A 170 . DP=89;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,27,18,23;MQ=60;FQ=173;PV4=0.83,4.7e-28,0.15,0.41 GT:PL:GQ 0/1:200,0,255:99 chr1 222736498 . C T 222 . DP=28;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,23,3;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 222737265 . G T 189 . DP=10;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:222,30,0:57 chr1 222737568 . C T 84 . DP=9;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:117,27,0:51 chr1 222751034 . T C 122 . DP=34;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,32;MQ=60;FQ=-126 GT:PL:GQ 1/1:155,99,0:99 chr1 222791646 . C T 142 . DP=17;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,3,12;MQ=60;FQ=-72 GT:PL:GQ 1/1:175,45,0:87 chr1 222794455 . T A 222 . DP=47;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,30,11;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 222798106 . G A 222 . DP=31;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,14,14;MQ=59;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 222802006 . A G 222 . DP=70;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,36,32;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr1 222802376 . A G 204 . DP=64;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,34;MQ=60;FQ=-217 GT:PL:GQ 1/1:237,190,0:99 chr1 222802926 . C T 222 . DP=110;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,44,61;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 222803204 . A G 197 . DP=51;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,27,17;MQ=60;FQ=-159 GT:PL:GQ 1/1:230,132,0:99 chr1 222805698 . T G 143 . DP=46;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,35;MQ=60;FQ=-162 GT:PL:GQ 1/1:176,135,0:99 chr1 222817670 . C T 56 . DP=11;VDB=0.0070;AF1=0.5;AC1=1;DP4=5,2,4,0;MQ=60;FQ=59;PV4=0.49,0.43,1,1 GT:PL:GQ 0/1:86,0,173:89 chr1 222823737 . TG T 8.18 . INDEL;DP=12;VDB=0.0359;AF1=0.5;AC1=1;DP4=0,4,0,2;MQ=60;FQ=10.8;PV4=1,1,1,1 GT:PL:GQ 0/1:45,0,88:47 chr1 222825403 . G A 222 . DP=14;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,3,10;MQ=60;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr1 222825761 . G A 97 . DP=45;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,38;MQ=60;FQ=-153 GT:PL:GQ 1/1:130,126,0:99 chr1 222832992 . A C 76 . DP=33;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,8,8,6;MQ=59;FQ=79;PV4=1,5.3e-15,0.13,1 GT:PL:GQ 0/1:106,0,255:99 chr1 222833601 . T C 155 . DP=28;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,5,21;MQ=60;FQ=-105 GT:PL:GQ 1/1:188,78,0:99 chr1 222838216 . C T 121 . DP=36;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,26;MQ=60;FQ=-126 GT:PL:GQ 1/1:154,99,0:99 chr1 223116109 . C T 65 . DP=27;VDB=0.0025;AF1=0.5;AC1=1;DP4=13,0,12,0;MQ=60;FQ=68;PV4=1,1.6e-09,1,0.094 GT:PL:GQ 0/1:95,0,172:98 chr1 223116240 . G A 191 . DP=211;VDB=0.0392;AF1=0.5;AC1=1;DP4=62,35,63,50;MQ=60;FQ=194;PV4=0.26,2.1e-51,0.33,0.18 GT:PL:GQ 0/1:221,0,255:99 chr1 223152868 . G A 143 . DP=10;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:176,30,0:57 chr1 223156382 . C T 166 . DP=32;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,24,7;MQ=58;FQ=-120 GT:PL:GQ 1/1:199,93,0:99 chr1 223176275 . G A 222 . DP=102;VDB=0.0399;AF1=1;AC1=2;DP4=0,1,42,57;MQ=60;FQ=-282;PV4=1,7.8e-06,0.46,0.22 GT:PL:GQ 1/1:255,255,0:99 chr1 223178478 . G A 222 . DP=80;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,48,30;MQ=60;FQ=-262 GT:PL:GQ 1/1:255,235,0:99 chr1 223178561 . A C 178 . DP=114;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,73,38;MQ=60;FQ=-282 GT:PL:GQ 1/1:211,255,0:99 chr1 223283910 . A G 205 . DP=78;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,48,26;MQ=60;FQ=-250 GT:PL:GQ 1/1:238,223,0:99 chr1 223284528 . A G 222 . DP=64;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,21,39;MQ=60;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr1 223285200 . G A 144 . DP=105;VDB=0.0399;AF1=0.5;AC1=1;DP4=20,36,18,27;MQ=59;FQ=147;PV4=0.68,1.8e-37,0.22,0.22 GT:PL:GQ 0/1:174,0,255:99 chr1 223285833 . G T 64 . DP=83;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,19,20,23;MQ=60;FQ=67;PV4=1,2.8e-40,1,1 GT:PL:GQ 0/1:94,0,255:97 chr1 223397037 . T C 66 . DP=14;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,7,0,6;MQ=60;FQ=69;PV4=1,0.27,1,0.34 GT:PL:GQ 0/1:96,0,152:99 chr1 223712870 . G T 136 . DP=20;VDB=0.0014;AF1=0.5;AC1=1;DP4=1,7,0,11;MQ=60;FQ=134;PV4=0.42,0.44,1,1 GT:PL:GQ 0/1:166,0,163:99 chr1 223715248 . GTT GT 177 . INDEL;DP=20;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,6,6,5;MQ=60;FQ=174;PV4=0.41,0.12,1,0.3 GT:PL:GQ 0/1:215,0,209:99 chr1 223716349 . G A 225 . DP=67;VDB=0.0380;AF1=0.5;AC1=1;DP4=32,4,27,4;MQ=59;FQ=225;PV4=1,0.16,1,0.062 GT:PL:GQ 0/1:255,0,255:99 chr1 223717379 . A C 99 . DP=27;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,25,2;MQ=59;FQ=-108 GT:PL:GQ 1/1:132,81,0:99 chr1 223717484 . G A 194 . DP=69;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,14,20,19;MQ=60;FQ=197;PV4=1,3.4e-12,1,1 GT:PL:GQ 0/1:224,0,255:99 chr1 223718462 . G A 107 . DP=16;VDB=0.0099;AF1=0.5;AC1=1;DP4=8,0,7,0;MQ=60;FQ=110;PV4=1,1,1,0.44 GT:PL:GQ 0/1:137,0,146:99 chr1 223718518 . C A 132 . DP=53;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,5,22,6;MQ=60;FQ=135;PV4=1,2.7e-17,1,0.33 GT:PL:GQ 0/1:162,0,255:99 chr1 223718651 . G A 225 . DP=51;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,14,7,20;MQ=60;FQ=225;PV4=0.37,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 223718670 . G A 225 . DP=45;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,11,7,20;MQ=60;FQ=225;PV4=0.51,0.48,1,0.35 GT:PL:GQ 0/1:255,0,255:99 chr1 223722780 . G A 159 . DP=65;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,16,13,17;MQ=60;FQ=162;PV4=0.62,4.4e-21,1,0.39 GT:PL:GQ 0/1:189,0,255:99 chr1 223799857 . C T 142 . DP=46;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,10,12,10;MQ=59;FQ=145;PV4=1,5.6e-25,0.073,1 GT:PL:GQ 0/1:172,0,255:99 chr1 223799871 . C T 225 . DP=54;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,12,12,12;MQ=59;FQ=225;PV4=0.58,0.15,0.056,1 GT:PL:GQ 0/1:255,0,255:99 chr1 223805804 . C T 169 . DP=22;VDB=0.0042;AF1=0.5;AC1=1;DP4=7,4,6,4;MQ=59;FQ=172;PV4=1,0.4,0.15,0.29 GT:PL:GQ 0/1:199,0,213:99 chr1 223807239 . C G 63 . DP=15;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,5,2,6;MQ=60;FQ=66;PV4=1,0.00094,1,0.19 GT:PL:GQ 0/1:93,0,150:96 chr1 223814682 . A T 55 . DP=15;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,0,6,1;MQ=58;FQ=58;PV4=1,3.5e-07,0.19,1 GT:PL:GQ 0/1:85,0,117:88 chr1 223815575 . G A 23 . DP=7;VDB=0.0010;AF1=0.5;AC1=1;DP4=3,0,2,1;MQ=56;FQ=25.9;PV4=1,0.0044,1,1 GT:PL:GQ 0/1:53,0,70:56 chr1 223816322 . A G 104 . DP=44;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,6,13,4;MQ=59;FQ=107;PV4=1,6.2e-19,0.11,1 GT:PL:GQ 0/1:134,0,255:99 chr1 223816347 . A G 124 . DP=52;VDB=0.0399;AF1=0.5;AC1=1;DP4=20,11,15,6;MQ=60;FQ=127;PV4=0.76,3.1e-16,0.11,1 GT:PL:GQ 0/1:154,0,255:99 chr1 223830566 . G A 172 . DP=149;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,53,24,52;MQ=60;FQ=175;PV4=0.59,1.1e-53,1,0.38 GT:PL:GQ 0/1:202,0,255:99 chr1 223841913 . C A 78 . DP=30;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,4,10,2;MQ=58;FQ=81;PV4=1,1e-11,0.039,0.38 GT:PL:GQ 0/1:108,0,255:99 chr1 223900408 . C G 222 . DP=57;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,30,25;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 223905532 . G A 201 . DP=64;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,21,39;MQ=59;FQ=-208 GT:PL:GQ 1/1:234,181,0:99 chr1 223934720 . G A 222 . DP=43;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,31,12;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 223938565 . A C 112 . DP=48;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,7,18,3;MQ=59;FQ=115;PV4=0.31,3e-09,0.14,0.48 GT:PL:GQ 0/1:142,0,255:99 chr1 223951841 . T C 105 . DP=30;VDB=0.0373;AF1=0.5;AC1=1;DP4=15,5,8,1;MQ=59;FQ=108;PV4=0.63,0.094,1,1 GT:PL:GQ 0/1:135,0,255:99 chr1 223954080 . A C 55 . DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,14,10,6;MQ=60;FQ=58;PV4=0.76,6.9e-19,1,0.31 GT:PL:GQ 0/1:85,0,255:88 chr1 224001963 . G A 225 . DP=76;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,19,14,26;MQ=60;FQ=225;PV4=0.35,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 224033281 . G C 23 . DP=10;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=26;PV4=1,0.0041,1,1 GT:PL:GQ 0/1:53,0,79:56 chr1 224302154 . TGAG TGAGGAG 172 . INDEL;DP=4;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:212,12,0:21 chr1 224318151 . TTTGTT TTTGTTGTT 214 . INDEL;DP=29;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,22,7;MQ=58;FQ=-122 GT:PL:GQ 1/1:255,87,0:99 chr1 224321984 . C T 51 . DP=18;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,16;MQ=60;FQ=-75 GT:PL:GQ 1/1:84,48,0:91 chr1 224444628 . C T 139 . DP=58;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,42,12;MQ=60;FQ=-190 GT:PL:GQ 1/1:172,163,0:99 chr1 224482216 . T C 44.1 . DP=7;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:77,21,0:39 chr1 224490858 . C T 50 . DP=13;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,7,2,4;MQ=60;FQ=53;PV4=0.19,2.1e-09,1,1 GT:PL:GQ 0/1:80,0,140:83 chr1 224492381 . C T 50 . DP=20;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:83,39,0:75 chr1 224492746 . C T 222 . DP=152;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,72,78;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 224495852 . C T 215 . DP=141;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,62,71;MQ=60;FQ=-282 GT:PL:GQ 1/1:248,255,0:99 chr1 224505570 . TAA TAAAA 214 . INDEL;DP=18;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,11;MQ=60;FQ=-88.5 GT:PL:GQ 1/1:255,54,0:99 chr1 224514275 . G A 89.5 . DP=4;VDB=0.0049;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:122,12,0:21 chr1 224517842 . C T 158 . DP=27;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,9,14;MQ=60;FQ=-96 GT:PL:GQ 1/1:191,69,0:99 chr1 224517907 . A T 130 . DP=12;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,2,10;MQ=60;FQ=-63 GT:PL:GQ 1/1:163,36,0:69 chr1 224544529 . A G 55 . DP=8;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:88,24,0:45 chr1 224600904 . caaaaa cAaaaaa 26.7 . INDEL;DP=10;VDB=0.0345;AF1=0.7304;AC1=1;DP4=1,0,4,1;MQ=60;FQ=-32.5;PV4=1,1,1,0.47 GT:PL:GQ 0/1:63,0,2:5 chr1 224621368 . G C 37.5 . DP=4;VDB=0.0082;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:70,12,0:21 chr1 224621538 . G A 96 . DP=25;VDB=0.0271;AF1=0.5;AC1=1;DP4=14,1,4,5;MQ=60;FQ=99;PV4=0.015,0.00048,1,1 GT:PL:GQ 0/1:126,0,181:99 chr1 224805112 . C T 20 . DP=10;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,4,1,4;MQ=60;FQ=23;PV4=1,6.8e-05,1,0.44 GT:PL:GQ 0/1:50,0,85:53 chr1 225230608 . C T 198 . DP=45;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,25;MQ=59;FQ=-162 GT:PL:GQ 1/1:231,135,0:99 chr1 225266966 . C G 222 . DP=25;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,21,3;MQ=59;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 225268343 . A G 160 . DP=103;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,37,58;MQ=59;FQ=-282 GT:PL:GQ 1/1:193,255,0:99 chr1 225268346 . G A 215 . DP=112;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,37,63;MQ=59;FQ=-282 GT:PL:GQ 1/1:248,255,0:99 chr1 225270409 . A T 141 . DP=28;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,6,22;MQ=59;FQ=-111 GT:PL:GQ 1/1:174,84,0:99 chr1 225273248 . G T 64 . DP=15;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:97,36,0:69 chr1 225492545 . A G 19.1 . DP=5;VDB=0.0030;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=21.8;PV4=1,0.00086,1,0.0023 GT:PL:GQ 0/1:49,0,61:52 chr1 225492845 . C T 124 . DP=8;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,2,1,5;MQ=60;FQ=19.1;PV4=1,1,1,0.21 GT:PL:GQ 0/1:154,0,46:49 chr1 225506294 . A G 161 . DP=81;VDB=0.0398;AF1=0.5;AC1=1;DP4=31,12,24,14;MQ=59;FQ=164;PV4=0.48,2.5e-23,1,0.26 GT:PL:GQ 0/1:191,0,255:99 chr1 225510564 . C T 59 . DP=11;VDB=0.0143;AF1=0.5;AC1=1;DP4=0,7,0,4;MQ=58;FQ=62;PV4=1,1,0.1,1 GT:PL:GQ 0/1:89,0,140:92 chr1 225533731 . T A 147 . DP=102;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,19,30,25;MQ=59;FQ=150;PV4=1,7.3e-30,1,0.27 GT:PL:GQ 0/1:177,0,255:99 chr1 225541649 . A G 33 . DP=10;VDB=0.0236;AF1=0.5;AC1=1;DP4=0,6,1,3;MQ=60;FQ=36;PV4=0.4,0.0011,1,1 GT:PL:GQ 0/1:63,0,124:66 chr1 225541899 . C T 135 . DP=42;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,7,13,7;MQ=59;FQ=138;PV4=1,5.5e-17,1,1 GT:PL:GQ 0/1:165,0,255:99 chr1 225545580 . A C 180 . DP=27;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,10,1,14;MQ=59;FQ=179;PV4=0.57,1,1,0.39 GT:PL:GQ 0/1:210,0,209:99 chr1 225546172 . C G 20.2 . DP=4;VDB=0.0098;AF1=0.5128;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-14.2;PV4=1,0.4,1,0.27 GT:PL:GQ 0/1:50,0,13:16 chr1 225552624 . G A 23 . DP=3;VDB=0.0104;AF1=0.5006;AC1=1;DP4=1,0,1,1;MQ=60;FQ=-3.54;PV4=1,0.33,1,1 GT:PL:GQ 0/1:53,0,26:29 chr1 225552650 . C T 37.8 . DP=2;VDB=0.0084;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:69,6,0:10 chr1 225555512 . C T 124 . DP=46;VDB=0.0271;AF1=0.5;AC1=1;DP4=16,10,10,10;MQ=60;FQ=127;PV4=0.55,1.3e-19,1,1 GT:PL:GQ 0/1:154,0,255:99 chr1 225555602 . T G 225 . DP=41;VDB=0.0140;AF1=0.5;AC1=1;DP4=10,14,5,12;MQ=60;FQ=225;PV4=0.52,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 225562385 . C T 174 . DP=40;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,33,6;MQ=60;FQ=-144 GT:PL:GQ 1/1:207,117,0:99 chr1 225565015 . T C 85 . DP=43;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,10,8,10;MQ=59;FQ=88;PV4=0.53,9.5e-13,0.13,0.49 GT:PL:GQ 0/1:115,0,255:99 chr1 225565073 . C T 185 . DP=43;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,13,4,11;MQ=59;FQ=188;PV4=0.32,1,0.1,1 GT:PL:GQ 0/1:215,0,255:99 chr1 225569241 . T G 107 . DP=35;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,9,7,14;MQ=60;FQ=110;PV4=0.71,3.2e-24,1,1 GT:PL:GQ 0/1:137,0,217:99 chr1 225576058 . T C 121 . DP=21;VDB=0.0393;AF1=0.5;AC1=1;DP4=12,0,7,1;MQ=60;FQ=123;PV4=0.4,1,1,1 GT:PL:GQ 0/1:151,0,155:99 chr1 225576311 . A G 77 . DP=24;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,14,2,8;MQ=59;FQ=80;PV4=0.16,1.7e-09,0.12,0.049 GT:PL:GQ 0/1:107,0,178:99 chr1 225577648 . C T 21 . DP=18;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,10,0,6;MQ=60;FQ=24;PV4=0.53,6.1e-08,1,0.019 GT:PL:GQ 0/1:51,0,222:54 chr1 225601647 . C T 222 . DP=59;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,43,15;MQ=59;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 225603103 . C T 39 . DP=4;VDB=0.0110;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:71,9,0:16 chr1 225607144 . C T 78 . DP=17;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,14;MQ=60;FQ=-69 GT:PL:GQ 1/1:111,42,0:81 chr1 225609884 . A G 131 . DP=17;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,8;MQ=60;FQ=-69 GT:PL:GQ 1/1:164,42,0:81 chr1 225611661 . C T 172 . DP=72;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,52,16;MQ=60;FQ=-232 GT:PL:GQ 1/1:205,205,0:99 chr1 225611845 . C T 114 . DP=25;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,2,23;MQ=59;FQ=-102 GT:PL:GQ 1/1:147,75,0:99 chr1 225685621 . TAAGAAGA TAAGA 214 . INDEL;DP=10;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,6;MQ=57;FQ=-58.5 GT:PL:GQ 1/1:255,24,0:45 chr1 226016397 . G A 61 . DP=5;VDB=0.0318;AF1=0.5025;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-7.78;PV4=1,0.38,1,0.25 GT:PL:GQ 0/1:91,0,20:23 chr1 226019633 . T C 225 . DP=63;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,19,15,16;MQ=60;FQ=225;PV4=0.44,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 226019653 . G A 107 . DP=62;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,20,11,17;MQ=60;FQ=110;PV4=1,1.2e-29,0.14,1 GT:PL:GQ 0/1:137,0,255:99 chr1 226019774 . G C 126 . DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:159,21,0:39 chr1 226026406 . A G 225 . DP=71;VDB=0.0298;AF1=0.5;AC1=1;DP4=28,17,15,11;MQ=60;FQ=225;PV4=0.8,0.14,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 226027067 . Ggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt GGTGTgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt,GGTGTGTgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 55.2 . INDEL;DP=9;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,3;MQ=52;FQ=-40.5 GT:PL:GQ 1/1:114,26,20,92,0,89:10 chr1 226032229 . C T 225 . DP=99;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,33,20,30;MQ=60;FQ=225;PV4=0.53,1,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr1 226036309 . A G 215 . DP=93;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,43,45;MQ=60;FQ=-282 GT:PL:GQ 1/1:248,255,0:99 chr1 226044489 . GCCCC GCCCCC 68.6 . INDEL;DP=7;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,5,1;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:109,18,0:33 chr1 226044766 . G A 222 . DP=27;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,9,18;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 226053805 . G A 80 . DP=13;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:113,33,0:63 chr1 226054333 . G A 63 . DP=46;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,14,10,5;MQ=59;FQ=66;PV4=0.53,2.6e-16,1,0.44 GT:PL:GQ 0/1:93,0,255:96 chr1 226054681 . T A 80.5 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:113,12,0:21 chr1 226054714 . G A 75 . DP=12;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,12,0;MQ=59;FQ=-63 GT:PL:GQ 1/1:108,36,0:69 chr1 226055595 . G A 186 . DP=34;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,25,9;MQ=59;FQ=-129 GT:PL:GQ 1/1:219,102,0:99 chr1 226125385 . G A 97 . DP=39;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,9,6,13;MQ=59;FQ=100;PV4=0.32,1.3e-09,1,1 GT:PL:GQ 0/1:127,0,255:99 chr1 226125543 . GA GAA 33.2 . INDEL;DP=2;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:72,6,0:10 chr1 226252232 . C T 82.5 . DP=6;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,1,3;MQ=55;FQ=-39 GT:PL:GQ 1/1:115,12,0:21 chr1 226253316 . G T 114 . DP=13;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,4,8;MQ=57;FQ=-63 GT:PL:GQ 1/1:147,36,0:69 chr1 226334578 . G A 110 . DP=34;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,4,28;MQ=59;FQ=-123 GT:PL:GQ 1/1:143,96,0:99 chr1 226334605 . T C 4.77 . DP=21;VDB=0.0042;AF1=0.4999;AC1=1;DP4=0,11,0,8;MQ=59;FQ=6.99;PV4=1,2.6e-13,1,0.48 GT:PL:GQ 0/1:33,0,163:33 chr1 226352498 . T G 73 . DP=108;VDB=0.0365;AF1=0.5;AC1=1;DP4=28,19,32,16;MQ=60;FQ=76;PV4=0.53,5.4e-40,1,1 GT:PL:GQ 0/1:103,0,255:99 chr1 226353521 . T A 70 . DP=109;VDB=0.0271;AF1=0.5;AC1=1;DP4=51,13,33,10;MQ=60;FQ=73;PV4=0.81,1.3e-43,1,0.31 GT:PL:GQ 0/1:100,0,255:99 chr1 226411317 . C T 30 . DP=4;VDB=0.0163;AF1=0.5032;AC1=1;DP4=0,1,2,1;MQ=54;FQ=-8.63;PV4=1,0.12,0.33,1 GT:PL:GQ 0/1:60,0,19:22 chr1 226474132 . G A 12.3 . DP=18;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,5,1,5;MQ=60;FQ=15.1;PV4=0.15,0.0002,1,1 GT:PL:GQ 0/1:42,0,233:44 chr1 226485327 . ATTTTTT ATTTTTTT 16.6 . INDEL;DP=29;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,3,14,1;MQ=59;FQ=19.4;PV4=0.33,1,1,0.46 GT:PL:GQ 0/1:54,0,68:57 chr1 226497419 . G A 167 . DP=117;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,35,19,44;MQ=60;FQ=170;PV4=1,1.6e-24,1,1 GT:PL:GQ 0/1:197,0,255:99 chr1 226550924 . G C 222 . DP=27;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,4,23;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 226555348 . G A 127 . DP=23;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,7,8,5;MQ=59;FQ=130;PV4=0.21,7.1e-07,0.2,0.26 GT:PL:GQ 0/1:157,0,205:99 chr1 226556094 . T C 107 . DP=20;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,3,17;MQ=60;FQ=-87 GT:PL:GQ 1/1:140,60,0:99 chr1 226566726 . A C 99.3 . DP=5;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:132,15,0:27 chr1 226567172 . A C 28 . DP=16;VDB=0.0325;AF1=0.5;AC1=1;DP4=6,2,7,0;MQ=60;FQ=31;PV4=0.47,8e-06,1,1 GT:PL:GQ 0/1:58,0,170:61 chr1 226570840 . T C 114 . DP=12;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,9,3;MQ=60;FQ=-63 GT:PL:GQ 1/1:147,36,0:69 chr1 226836590 . A G 166 . DP=69;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,27,8,27;MQ=59;FQ=169;PV4=0.35,5.1e-11,0.091,0.47 GT:PL:GQ 0/1:196,0,255:99 chr1 226923146 . GTT GT 144 . INDEL;DP=21;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,4,4,5;MQ=60;FQ=147;PV4=0.4,0.31,1,0.33 GT:PL:GQ 0/1:182,0,255:99 chr1 226923264 . G A 49 . DP=27;VDB=0.0384;AF1=0.5;AC1=1;DP4=6,10,4,6;MQ=60;FQ=52;PV4=1,7.8e-13,1,0.36 GT:PL:GQ 0/1:79,0,255:82 chr1 226923505 . G T 222 . DP=90;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,37,49;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 226923938 . A C 132 . DP=43;VDB=0.0244;AF1=0.5;AC1=1;DP4=8,13,13,7;MQ=60;FQ=135;PV4=0.12,3.9e-13,1,1 GT:PL:GQ 0/1:162,0,255:99 chr1 226924875 . actgccgctgctgccgctgc actgccgctgc 6.55 . INDEL;DP=30;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,14,0,5;MQ=55;FQ=9.05;PV4=0.54,0.34,0,1 GT:PL:GQ 0/1:43,0,255:44 chr1 227069677 . T C 183 . DP=51;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,16,12,16;MQ=60;FQ=186;PV4=0.13,3.4e-09,1,1 GT:PL:GQ 0/1:213,0,243:99 chr1 227069737 . C T 185 . DP=20;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,6,3,9;MQ=60;FQ=118;PV4=1,0.054,1,0.2 GT:PL:GQ 0/1:215,0,145:99 chr1 227071525 . C T 225 . DP=36;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,15,6,11;MQ=60;FQ=216;PV4=0.26,1,1,1 GT:PL:GQ 0/1:255,0,243:99 chr1 227073410 . G C 70 . DP=60;VDB=0.0164;AF1=0.5;AC1=1;DP4=7,26,1,24;MQ=60;FQ=73;PV4=0.12,1.8e-18,1,1 GT:PL:GQ 0/1:100,0,255:99 chr1 227075939 . C T 73 . DP=9;VDB=0.0022;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=60;FQ=73.5;PV4=1,1,1,1 GT:PL:GQ 0/1:103,0,104:99 chr1 227078955 . T C 24 . DP=15;VDB=0.0329;AF1=0.5;AC1=1;DP4=9,2,3,0;MQ=60;FQ=27;PV4=1,1,1,1 GT:PL:GQ 0/1:54,0,198:57 chr1 227081622 . A G 75 . DP=12;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,0,4,2;MQ=60;FQ=64.8;PV4=0.47,0.0019,1,0.42 GT:PL:GQ 0/1:105,0,92:95 chr1 227081850 . G A 111 . DP=20;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,7,2,10;MQ=59;FQ=113;PV4=1,2.2e-06,1,0.096 GT:PL:GQ 0/1:141,0,145:99 chr1 227170543 . C G 122 . DP=24;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,14;MQ=59;FQ=-87 GT:PL:GQ 1/1:155,60,0:99 chr1 227171737 . G T 83 . DP=15;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:116,39,0:75 chr1 227171739 . G T 76 . DP=15;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:109,39,0:75 chr1 227172290 . C T 196 . DP=98;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,40,53;MQ=60;FQ=-282 GT:PL:GQ 1/1:229,255,0:99 chr1 227172903 . G A 107 . DP=16;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,14,1;MQ=60;FQ=-72 GT:PL:GQ 1/1:140,45,0:87 chr1 227172935 . C G 147 . DP=21;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,5;MQ=60;FQ=-87 GT:PL:GQ 1/1:180,60,0:99 chr1 227174145 . T C 129 . DP=48;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,44,3;MQ=60;FQ=-168 GT:PL:GQ 1/1:162,141,0:99 chr1 227174210 . T C 222 . DP=109;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,75,28;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 227181923 . C T 110 . DP=6;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,5,1;MQ=60;FQ=-45 GT:PL:GQ 1/1:143,18,0:33 chr1 227182033 . G A 219 . DP=46;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,25,18;MQ=60;FQ=-156 GT:PL:GQ 1/1:252,129,0:99 chr1 227182575 . A G 222 . DP=79;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,54,21;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr1 227182674 . G A 174 . DP=99;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,33,18,30;MQ=60;FQ=177;PV4=0.52,2.4e-29,1,1 GT:PL:GQ 0/1:204,0,255:99 chr1 227182754 . G A 158 . DP=32;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,3,28;MQ=60;FQ=-120 GT:PL:GQ 1/1:191,93,0:99 chr1 227204557 . T C 222 . DP=36;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,34,2;MQ=60;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 227210820 . G A 140 . DP=19;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,15,3;MQ=60;FQ=-81 GT:PL:GQ 1/1:173,54,0:99 chr1 227210888 . A T 125 . DP=35;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,20,14;MQ=60;FQ=-129 GT:PL:GQ 1/1:158,102,0:99 chr1 227213968 . G T 58 . DP=22;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81 GT:PL:GQ 1/1:91,54,0:99 chr1 227216662 . T C 159 . DP=111;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,45,61;MQ=60;FQ=-282 GT:PL:GQ 1/1:192,255,0:99 chr1 227216775 . C T 222 . DP=116;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,63,50;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 227218069 . C CAT 214 . INDEL;DP=13;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-73.5 GT:PL:GQ 1/1:255,39,0:75 chr1 227221123 . G A 167 . DP=33;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,17,15;MQ=60;FQ=-123 GT:PL:GQ 1/1:200,96,0:99 chr1 227222515 . GACAAACA GACAAACAAACA 214 . INDEL;DP=61;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,10,39;MQ=59;FQ=-183 GT:PL:GQ 1/1:255,148,0:99 chr1 227239562 . G C 188 . DP=44;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,22,18;MQ=60;FQ=-147 GT:PL:GQ 1/1:221,120,0:99 chr1 227330759 . A G 202 . DP=41;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,8,32;MQ=59;FQ=-147 GT:PL:GQ 1/1:235,120,0:99 chr1 227387361 . A G 222 . DP=21;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,17;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 227834233 . TCCCCCCCCC TCCCCCCCC 12.7 . INDEL;DP=74;VDB=0.0380;AF1=0.5008;AC1=1;DP4=16,12,18,23;MQ=60;FQ=-10;PV4=0.33,0.0097,1,1 GT:PL:GQ 0/1:50,0,25:28 chr1 227920665 . A G 111 . DP=37;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,5,13,7;MQ=60;FQ=114;PV4=1,3e-16,1,1 GT:PL:GQ 0/1:141,0,255:99 chr1 227922918 . A C 149 . DP=70;VDB=0.0392;AF1=0.5;AC1=1;DP4=29,9,25,5;MQ=60;FQ=152;PV4=0.56,2.7e-10,1,0.41 GT:PL:GQ 0/1:179,0,255:99 chr1 227923081 . G A 222 . DP=69;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,21,44;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr1 227935280 . C T 153 . DP=20;VDB=0.0033;AF1=0.5;AC1=1;DP4=8,0,9,1;MQ=60;FQ=106;PV4=1,1,1,1 GT:PL:GQ 0/1:183,0,133:99 chr1 227935355 . T C 225 . DP=48;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,8,17,8;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 227935444 . A G 115 . DP=74;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,19,16,21;MQ=60;FQ=118;PV4=1,6.6e-32,1,1 GT:PL:GQ 0/1:145,0,255:99 chr1 227968107 . G A 107 . DP=14;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,0,4,2;MQ=60;FQ=109;PV4=0.16,0.31,1,1 GT:PL:GQ 0/1:137,0,141:99 chr1 228004966 . C A 120 . DP=50;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,9,19,3;MQ=60;FQ=123;PV4=0.1,8.1e-12,0.15,1 GT:PL:GQ 0/1:150,0,255:99 chr1 228033197 . A G 153 . DP=14;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,11,3;MQ=58;FQ=-69 GT:PL:GQ 1/1:186,42,0:81 chr1 228109471 . C T 225 . DP=87;VDB=0.0365;AF1=0.5;AC1=1;DP4=25,16,36,7;MQ=59;FQ=225;PV4=0.027,0.13,0.3,1 GT:PL:GQ 0/1:255,0,255:99 chr1 228129197 . T C 166 . DP=27;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,8,5,5;MQ=60;FQ=169;PV4=1,0.47,1,0.42 GT:PL:GQ 0/1:196,0,255:99 chr1 228294300 . T C 6.02 . DP=4;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr1 228346053 . C T 190 . DP=30;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,3,9,5;MQ=60;FQ=192;PV4=0.42,0.18,1,0.2 GT:PL:GQ 0/1:220,0,225:99 chr1 228352160 . T C 222 . DP=44;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,8,34;MQ=59;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 228353651 . G C 84 . DP=11;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:117,33,0:63 chr1 228391591 . G C 150 . DP=10;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:183,30,0:57 chr1 228399482 . C G 37 . DP=6;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:69,9,0:16 chr1 228399766 . T C 193 . DP=22;VDB=0.0298;AF1=1;AC1=2;DP4=1,0,12,9;MQ=59;FQ=-61;PV4=1,0.055,0.42,0.31 GT:PL:GQ 1/1:226,34,0:65 chr1 228400646 . T C 91 . DP=21;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,20;MQ=58;FQ=-90 GT:PL:GQ 1/1:124,63,0:99 chr1 228400653 . A T 179 . DP=20;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,16;MQ=57;FQ=-78 GT:PL:GQ 1/1:212,51,0:99 chr1 228402047 . A G 222 . DP=75;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,34,39;MQ=60;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr1 228402121 . A G 222 . DP=62;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,15,46;MQ=60;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr1 228404997 . C T 225 . DP=36;VDB=0.0343;AF1=0.5;AC1=1;DP4=6,12,7,11;MQ=60;FQ=225;PV4=1,0.099,1,0.21 GT:PL:GQ 0/1:255,0,255:99 chr1 228431095 . A G 138 . DP=41;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,14,7,11;MQ=58;FQ=141;PV4=0.75,9.3e-16,1,0.035 GT:PL:GQ 0/1:168,0,255:99 chr1 228431930 . C T 225 . DP=97;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,22,37,11;MQ=60;FQ=225;PV4=0.032,0.059,1,0.13 GT:PL:GQ 0/1:255,0,255:99 chr1 228433217 . A G 158 . DP=42;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,8,10,14;MQ=59;FQ=161;PV4=0.54,1.9e-14,0.2,1 GT:PL:GQ 0/1:188,0,255:99 chr1 228434395 . T C 182 . DP=49;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,5,13,17;MQ=59;FQ=185;PV4=0.13,9.9e-11,0.24,1 GT:PL:GQ 0/1:212,0,229:99 chr1 228434467 . T C 144 . DP=39;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,11,6,15;MQ=60;FQ=147;PV4=1,2.8e-12,1,1 GT:PL:GQ 0/1:174,0,251:99 chr1 228437603 . T C 16.1 . DP=20;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,1,6,2;MQ=60;FQ=19.1;PV4=0.54,6.1e-07,1,0.42 GT:PL:GQ 0/1:46,0,191:49 chr1 228438045 . G A 12.3 . DP=4;VDB=0.0098;AF1=0.5008;AC1=1;DP4=0,1,0,3;MQ=60;FQ=-4.17;PV4=1,0.022,1,1 GT:PL:GQ 0/1:42,0,25:28 chr1 228444318 . T G 36 . DP=21;VDB=0.0216;AF1=0.5;AC1=1;DP4=11,1,5,3;MQ=60;FQ=39;PV4=0.26,9.7e-14,1,0.016 GT:PL:GQ 0/1:66,0,200:69 chr1 228444565 . T A 222 . DP=51;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,9,37;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 228451826 . C T 178 . DP=37;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,8,8,6;MQ=59;FQ=181;PV4=1,0.18,0.41,1 GT:PL:GQ 0/1:208,0,255:99 chr1 228456147 . T C 182 . DP=136;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,38,31,38;MQ=60;FQ=185;PV4=0.6,7.1e-42,0.35,1 GT:PL:GQ 0/1:212,0,255:99 chr1 228459780 . G A 120 . DP=45;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,14,6,16;MQ=60;FQ=123;PV4=0.75,2.7e-14,1,0.36 GT:PL:GQ 0/1:150,0,255:99 chr1 228461129 . A G 219 . DP=30;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,6,7,7;MQ=60;FQ=221;PV4=0.71,0.19,1,1 GT:PL:GQ 0/1:249,0,255:99 chr1 228461408 . AGGG AGGGG 175 . INDEL;DP=10;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,7,3;MQ=60;FQ=-64.5 GT:PL:GQ 1/1:216,30,0:57 chr1 228464248 . T G 122 . DP=53;VDB=0.0099;AF1=0.5;AC1=1;DP4=17,13,16,7;MQ=60;FQ=125;PV4=0.4,6.2e-15,1,1 GT:PL:GQ 0/1:152,0,255:99 chr1 228464276 . T C 173 . DP=63;VDB=0.0298;AF1=0.5;AC1=1;DP4=17,15,19,11;MQ=60;FQ=176;PV4=0.45,1.5e-08,1,1 GT:PL:GQ 0/1:203,0,255:99 chr1 228464842 . C G 154 . DP=64;VDB=0.0384;AF1=0.5;AC1=1;DP4=15,14,14,19;MQ=60;FQ=157;PV4=0.61,9.9e-20,0.18,0.21 GT:PL:GQ 0/1:184,0,255:99 chr1 228465370 . T G 180 . DP=53;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,15,14,11;MQ=60;FQ=183;PV4=0.4,1.2e-09,1,1 GT:PL:GQ 0/1:210,0,255:99 chr1 228468458 . G A 97 . DP=15;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,7,0,8;MQ=58;FQ=97.5;PV4=1,0.058,0.18,0.32 GT:PL:GQ 0/1:127,0,128:99 chr1 228470995 . G T 132 . DP=8;VDB=0.0053;AF1=0.5102;AC1=1;DP4=0,1,1,6;MQ=60;FQ=-13.2;PV4=1,0.32,1,1 GT:PL:GQ 0/1:162,0,14:17 chr1 228475848 . G A 187 . DP=94;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,33,23,21;MQ=60;FQ=190;PV4=0.056,6.4e-25,0.15,1 GT:PL:GQ 0/1:217,0,255:99 chr1 228480282 . A G 171 . DP=66;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,17,13,19;MQ=59;FQ=174;PV4=0.62,1.1e-20,1,0.4 GT:PL:GQ 0/1:201,0,255:99 chr1 228481382 . C T 78 . DP=22;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,8,1,11;MQ=60;FQ=81;PV4=1,5.6e-10,1,0.14 GT:PL:GQ 0/1:108,0,173:99 chr1 228482010 . C T 225 . DP=114;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,28,37,18;MQ=59;FQ=225;PV4=0.083,0.028,1,0.061 GT:PL:GQ 0/1:255,0,255:99 chr1 228492044 . G A 118 . DP=110;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,21,28,38;MQ=60;FQ=121;PV4=0.55,3.6e-44,1,0.24 GT:PL:GQ 0/1:148,0,255:99 chr1 228494382 . T G 88 . DP=40;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,19,2,15;MQ=59;FQ=91;PV4=1,5.8e-14,1,1 GT:PL:GQ 0/1:118,0,234:99 chr1 228494790 . G A 110 . DP=31;VDB=0.0384;AF1=0.5;AC1=1;DP4=8,10,6,7;MQ=58;FQ=113;PV4=1,3.4e-07,0.41,0.33 GT:PL:GQ 0/1:140,0,255:99 chr1 228495696 . T C 10.4 . DP=6;VDB=0.0149;AF1=0.5;AC1=1;DP4=1,2,3,0;MQ=60;FQ=13.2;PV4=0.4,0.0043,1,1 GT:PL:GQ 0/1:40,0,77:42 chr1 228497053 . A G 71 . DP=73;VDB=0.0392;AF1=0.5;AC1=1;DP4=27,17,15,11;MQ=60;FQ=74;PV4=0.8,3.5e-28,1,1 GT:PL:GQ 0/1:101,0,255:99 chr1 228503677 . A G 129 . DP=37;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,9,9,2;MQ=60;FQ=132;PV4=0.44,1,1,0.21 GT:PL:GQ 0/1:159,0,255:99 chr1 228503711 . G A 73 . DP=54;VDB=0.0345;AF1=0.5;AC1=1;DP4=22,12,13,5;MQ=60;FQ=76;PV4=0.76,2.4e-15,0.086,1 GT:PL:GQ 0/1:103,0,255:99 chr1 228504472 . T C 200 . DP=14;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,1,7,3;MQ=60;FQ=58;PV4=1,1,1,1 GT:PL:GQ 0/1:230,0,85:88 chr1 228505668 . C G 216 . DP=42;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,9,11,6;MQ=60;FQ=219;PV4=1,0.3,1,1 GT:PL:GQ 0/1:246,0,255:99 chr1 228505699 . T C 207 . DP=46;VDB=0.0393;AF1=0.5;AC1=1;DP4=14,11,12,4;MQ=59;FQ=210;PV4=0.32,1,0.11,0.25 GT:PL:GQ 0/1:237,0,255:99 chr1 228509427 . A G 99 . DP=56;VDB=0.0384;AF1=0.5;AC1=1;DP4=19,15,10,9;MQ=59;FQ=102;PV4=1,1.1e-13,0.34,0.45 GT:PL:GQ 0/1:129,0,255:99 chr1 228520880 . C T 47.2 . DP=9;VDB=0.0033;AF1=0.5207;AC1=1;DP4=1,0,7,1;MQ=60;FQ=-16.1;PV4=1,8.5e-05,1,0.17 GT:PL:GQ 0/1:77,0,11:14 chr1 228520973 . C G 134 . DP=30;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,7,6,8;MQ=60;FQ=137;PV4=1,9.1e-05,1,1 GT:PL:GQ 0/1:164,0,224:99 chr1 228523442 . T C 82 . DP=26;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,8,6,2;MQ=56;FQ=85;PV4=0.42,0.048,0.019,1 GT:PL:GQ 0/1:112,0,255:99 chr1 228523618 . G A 71 . DP=21;VDB=0.0359;AF1=0.5;AC1=1;DP4=1,8,4,6;MQ=60;FQ=74;PV4=0.3,6.2e-10,1,1 GT:PL:GQ 0/1:101,0,162:99 chr1 228524919 . G A 94 . DP=43;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,12,12,8;MQ=59;FQ=97;PV4=0.2,2.4e-15,1,0.12 GT:PL:GQ 0/1:124,0,255:99 chr1 228524961 . C A 150 . DP=41;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,7,14,11;MQ=59;FQ=153;PV4=1,5.8e-07,1,1 GT:PL:GQ 0/1:180,0,236:99 chr1 228525627 . C A 64 . DP=41;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,6,9,6;MQ=60;FQ=67;PV4=0.48,9.4e-12,1,0.26 GT:PL:GQ 0/1:94,0,255:97 chr1 228525898 . C G 59 . DP=22;VDB=0.0384;AF1=0.5;AC1=1;DP4=7,7,2,5;MQ=60;FQ=62;PV4=0.64,0.00044,1,1 GT:PL:GQ 0/1:89,0,255:92 chr1 228526486 . G A 52 . DP=5;VDB=0.0133;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=32;PV4=1,0.25,1,1 GT:PL:GQ 0/1:82,0,59:62 chr1 228526665 . T C 9.52 . DP=15;VDB=0.0041;AF1=0.5;AC1=1;DP4=2,9,0,4;MQ=58;FQ=12.3;PV4=1,0.067,0.049,1 GT:PL:GQ 0/1:39,0,181:41 chr1 228528177 . C T 25 . DP=15;VDB=0.0216;AF1=0.5;AC1=1;DP4=8,2,3,2;MQ=60;FQ=28;PV4=0.56,9.9e-05,1,1 GT:PL:GQ 0/1:55,0,188:58 chr1 228528412 . G A 225 . DP=65;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,17,15,13;MQ=60;FQ=225;PV4=1,0.00061,0.13,0.21 GT:PL:GQ 0/1:255,0,255:99 chr1 228528563 . C G 49 . DP=17;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,8,1,5;MQ=60;FQ=52;PV4=1,0.00073,1,1 GT:PL:GQ 0/1:79,0,187:82 chr1 228547901 . C T 225 . DP=60;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,9,16,17;MQ=60;FQ=225;PV4=0.2,0.35,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 228556788 . C T 14.2 . DP=19;VDB=0.0066;AF1=0.5;AC1=1;DP4=11,1,5,1;MQ=60;FQ=17.1;PV4=1,5.9e-06,1,1 GT:PL:GQ 0/1:44,0,194:47 chr1 228559994 . C T 222 . DP=87;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,34,48;MQ=60;FQ=-274 GT:PL:GQ 1/1:255,247,0:99 chr1 228560139 . A G 126 . DP=18;VDB=0.0325;AF1=1;AC1=2;DP4=0,1,7,6;MQ=60;FQ=-30;PV4=1,0.00017,1,0.35 GT:PL:GQ 1/1:156,3,0:6 chr1 228560700 . T C 225 . DP=49;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,7,18,8;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 228565208 . C T 118 . DP=33;VDB=0.0398;AF1=0.5;AC1=1;DP4=15,2,9,5;MQ=59;FQ=121;PV4=0.2,1.3e-11,0.14,0.31 GT:PL:GQ 0/1:148,0,233:99 chr1 228588979 . C G 30 . DP=10;VDB=0.0019;AF1=0.5;AC1=1;DP4=1,4,1,4;MQ=60;FQ=33;PV4=1,6.1e-06,1,1 GT:PL:GQ 0/1:60,0,128:63 chr1 228612838 . G T 209 . DP=19;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,11,8;MQ=60;FQ=-84 GT:PL:GQ 1/1:242,57,0:99 chr1 228613052 . T C 222 . DP=34;VDB=0.0271;AF1=1;AC1=2;DP4=0,1,4,27;MQ=59;FQ=-88;PV4=1,0.47,0.43,1 GT:PL:GQ 1/1:255,61,0:99 chr1 228645063 . A G 85 . DP=11;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:118,33,0:63 chr1 228699477 . T C 222 . DP=173;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,102,65;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 228871693 . C T 122 . DP=44;VDB=0.0398;AF1=0.5;AC1=1;DP4=19,8,8,7;MQ=60;FQ=125;PV4=0.33,7.7e-09,1,0.34 GT:PL:GQ 0/1:152,0,255:99 chr1 228873640 . GTT GT 13.7 . INDEL;DP=5;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=16.2;PV4=1,0.0041,1,1 GT:PL:GQ 0/1:51,0,61:53 chr1 229422088 . A G 62 . DP=7;VDB=0.0002;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=57;FQ=42;PV4=1,1,0.22,1 GT:PL:GQ 0/1:92,0,69:72 chr1 229422193 . T C 130 . DP=34;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,4,13,7;MQ=60;FQ=133;PV4=1,4.7e-13,1,0.27 GT:PL:GQ 0/1:160,0,241:99 chr1 229567660 . CGG CGGG 51.5 . INDEL;DP=19;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,10,2,3;MQ=59;FQ=54.5;PV4=0.21,1,0.072,1 GT:PL:GQ 0/1:89,0,149:92 chr1 229568231 . T G 80.5 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:113,12,0:21 chr1 229568632 . A G 185 . DP=91;VDB=0.0345;AF1=0.5;AC1=1;DP4=24,21,22,21;MQ=59;FQ=188;PV4=1,9.5e-14,1,0.42 GT:PL:GQ 0/1:215,0,255:99 chr1 229568637 . C G 130 . DP=90;VDB=0.0298;AF1=0.5;AC1=1;DP4=25,24,20,19;MQ=59;FQ=133;PV4=1,2e-24,1,1 GT:PL:GQ 0/1:160,0,255:99 chr1 229599225 . T C 96 . DP=10;VDB=0.0011;AF1=0.5;AC1=1;DP4=4,0,6,0;MQ=60;FQ=68;PV4=1,0.25,1,1 GT:PL:GQ 0/1:126,0,95:98 chr1 229600336 . A C 5.46 . DP=20;VDB=0.0025;AF1=0.4999;AC1=1;DP4=12,0,8,0;MQ=60;FQ=7.8;PV4=1,9.4e-10,1,0.48 GT:PL:GQ 0/1:34,0,171:34 chr1 229602284 . C A 19.1 . DP=19;VDB=0.0008;AF1=0.5;AC1=1;DP4=11,0,6,0;MQ=60;FQ=22;PV4=1,1.5e-09,1,0.068 GT:PL:GQ 0/1:49,0,171:52 chr1 229622162 . A G 106 . DP=128;VDB=0.0392;AF1=0.5;AC1=1;DP4=43,28,32,21;MQ=60;FQ=109;PV4=1,3.2e-51,1,1 GT:PL:GQ 0/1:136,0,255:99 chr1 229623131 . G C 213 . DP=36;VDB=0.0053;AF1=0.5;AC1=1;DP4=13,4,15,3;MQ=59;FQ=216;PV4=0.69,0.18,0.083,0.43 GT:PL:GQ 0/1:243,0,255:99 chr1 229623137 . T C 123 . DP=43;VDB=0.0066;AF1=0.5;AC1=1;DP4=18,4,17,4;MQ=59;FQ=126;PV4=1,3.2e-16,0.072,1 GT:PL:GQ 0/1:153,0,255:99 chr1 229623338 . T C 131 . DP=83;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,35,6,32;MQ=58;FQ=134;PV4=1,1.3e-23,0.037,1 GT:PL:GQ 0/1:161,0,255:99 chr1 229623409 . ATTTGT ATTTGTTTGT 136 . INDEL;DP=22;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,9,0,8;MQ=53;FQ=139;PV4=1,1,0.0012,1 GT:PL:GQ 0/1:174,0,248:99 chr1 229631734 . T C 217 . DP=45;VDB=0.0393;AF1=0.5;AC1=1;DP4=12,17,7,9;MQ=60;FQ=219;PV4=1,0.07,1,0.37 GT:PL:GQ 0/1:247,0,255:99 chr1 229635521 . A G 174 . DP=71;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,15,19,19;MQ=60;FQ=177;PV4=0.81,2.8e-13,1,1 GT:PL:GQ 0/1:204,0,255:99 chr1 229636388 . A G 68.5 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:101,12,0:21 chr1 229637645 . C A 68 . DP=29;VDB=0.0099;AF1=0.5;AC1=1;DP4=11,2,13,1;MQ=60;FQ=71;PV4=0.6,7e-13,1,1 GT:PL:GQ 0/1:98,0,214:99 chr1 229637881 . T G 87 . DP=66;VDB=0.0140;AF1=0.5;AC1=1;DP4=3,30,2,31;MQ=60;FQ=90;PV4=1,4.9e-27,1,1 GT:PL:GQ 0/1:117,0,255:99 chr1 229663064 . GAGGAAAGGAAAGGAAAG GAGGAAAGGAAAG 214 . INDEL;DP=66;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,38,22;MQ=57;FQ=-216 GT:PL:GQ 1/1:255,181,0:99 chr1 229683264 . G A 5.46 . DP=3;VDB=0.0196;AF1=0.5003;AC1=1;DP4=1,0,2,0;MQ=60;FQ=3.03;PV4=1,0.061,1,1 GT:PL:GQ 0/1:34,0,28:31 chr1 229730452 . G A 225 . DP=87;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,14,27,15;MQ=60;FQ=225;PV4=1,0.033,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 229738170 . T G 225 . DP=71;VDB=0.0345;AF1=0.5;AC1=1;DP4=24,18,18,10;MQ=60;FQ=225;PV4=0.62,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 229738236 . G A 170 . DP=72;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,35,32;MQ=60;FQ=-229 GT:PL:GQ 1/1:203,202,0:99 chr1 229746019 . C T 225 . DP=34;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,11,6,10;MQ=60;FQ=225;PV4=1,0.17,1,0.23 GT:PL:GQ 0/1:255,0,255:99 chr1 229750036 . C T 225 . DP=61;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,13,16,13;MQ=59;FQ=225;PV4=1,1,0.071,1 GT:PL:GQ 0/1:255,0,255:99 chr1 229750343 . T G 65 . DP=48;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,30,2,13;MQ=60;FQ=68;PV4=0.58,6.9e-11,1,0.47 GT:PL:GQ 0/1:95,0,233:98 chr1 229768297 . C T 31 . DP=16;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,8,0,8;MQ=60;FQ=34;PV4=1,6.2e-07,1,1 GT:PL:GQ 0/1:61,0,140:64 chr1 229771083 . C T 106 . DP=129;VDB=0.0392;AF1=0.5;AC1=1;DP4=38,31,30,25;MQ=59;FQ=109;PV4=1,7e-43,1,1 GT:PL:GQ 0/1:136,0,255:99 chr1 229772693 . T G 149 . DP=78;VDB=0.0400;AF1=0.5;AC1=1;DP4=24,16,18,15;MQ=60;FQ=152;PV4=0.81,4e-11,1,0.41 GT:PL:GQ 0/1:179,0,255:99 chr1 229781744 . T C 168 . DP=67;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,15,17,15;MQ=60;FQ=171;PV4=1,3.7e-13,1,0.02 GT:PL:GQ 0/1:198,0,255:99 chr1 229783236 . T C 189 . DP=47;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,31,12;MQ=58;FQ=-156 GT:PL:GQ 1/1:222,129,0:99 chr1 229783240 . T C 104 . DP=48;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,6,20,9;MQ=59;FQ=107;PV4=1,2.1e-18,0.14,1 GT:PL:GQ 0/1:134,0,253:99 chr1 229790048 . A G 103 . DP=69;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,19,11,19;MQ=59;FQ=106;PV4=0.46,1.2e-24,1,1 GT:PL:GQ 0/1:133,0,255:99 chr1 229795070 . T G 58 . DP=16;VDB=0.0399;AF1=0.5;AC1=1;DP4=0,5,1,9;MQ=60;FQ=60.9;PV4=1,2.6e-08,1,0.44 GT:PL:GQ 0/1:88,0,103:91 chr1 230415025 . A G 167 . DP=78;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,14,26,13;MQ=60;FQ=170;PV4=1,7.6e-23,1,1 GT:PL:GQ 0/1:197,0,255:99 chr1 230451935 . cat cATat 214 . INDEL;DP=10;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,8,2;MQ=60;FQ=-64.5 GT:PL:GQ 1/1:255,30,0:57 chr1 230451978 . G A 222 . DP=16;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,8,7;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr1 230459433 . GCCCCCCC GCCCCCC 31.5 . INDEL;DP=8;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-58.5 GT:PL:GQ 1/1:72,24,0:44 chr1 230473103 . A C 87 . DP=25;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,2,22;MQ=59;FQ=-99 GT:PL:GQ 1/1:120,72,0:99 chr1 230497940 . G T 57 . DP=31;VDB=0.0216;AF1=0.5;AC1=1;DP4=18,1,10,2;MQ=60;FQ=60;PV4=0.54,7.5e-14,1,1 GT:PL:GQ 0/1:87,0,214:90 chr1 230503684 . C T 3.54 . DP=7;VDB=0.0176;AF1=0.4998;AC1=1;DP4=5,0,2,0;MQ=60;FQ=5.47;PV4=1,0.085,1,0.28 GT:PL:GQ 0/1:31,0,113:30 chr1 230778491 . G C 170 . DP=44;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,10,33;MQ=60;FQ=-156 GT:PL:GQ 1/1:203,129,0:99 chr1 230795177 . T C 192 . DP=50;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,39,9;MQ=60;FQ=-171 GT:PL:GQ 1/1:225,144,0:99 chr1 230796375 . A C 25 . DP=21;VDB=0.0033;AF1=0.5;AC1=1;DP4=13,0,7,0;MQ=60;FQ=28;PV4=1,1.6e-11,1,1 GT:PL:GQ 0/1:55,0,174:58 chr1 230819295 . ATTCTTCTTCTT ATTCTTCTT 214 . INDEL;DP=46;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,33,12;MQ=54;FQ=-170 GT:PL:GQ 1/1:255,135,0:99 chr1 230829139 . A G 149 . DP=41;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,29;MQ=58;FQ=-150 GT:PL:GQ 1/1:182,123,0:99 chr1 230840096 . T C 166 . DP=15;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:199,39,0:75 chr1 230841687 . T C 222 . DP=46;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,27,17;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 230845794 . A G 222 . DP=115;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,93,18;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 230846679 . T C 96 . DP=10;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,2,8;MQ=58;FQ=-57 GT:PL:GQ 1/1:129,30,0:57 chr1 230883466 . C T 166 . DP=28;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,12,2,11;MQ=60;FQ=169;PV4=1,0.25,1,1 GT:PL:GQ 0/1:196,0,209:99 chr1 230883484 . T C 102 . DP=20;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,9,0,9;MQ=59;FQ=105;PV4=0.48,0.19,1,1 GT:PL:GQ 0/1:132,0,196:99 chr1 230883499 . T C 63 . DP=16;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,6,0,9;MQ=59;FQ=66;PV4=0.44,0.00011,1,0.02 GT:PL:GQ 0/1:93,0,137:96 chr1 230895340 . C A 120 . DP=17;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,8,1,6;MQ=60;FQ=123;PV4=1,1,1,1 GT:PL:GQ 0/1:150,0,161:99 chr1 230903234 . A G 10.2 . DP=3;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:41,6,0:8 chr1 230914706 . C A 141 . DP=22;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,3,9,8;MQ=60;FQ=73;PV4=1,9.1e-05,1,0.055 GT:PL:GQ 0/1:171,0,100:99 chr1 230914729 . A C 206 . DP=21;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,11;MQ=60;FQ=-90 GT:PL:GQ 1/1:239,63,0:99 chr1 230916260 . C T 202 . DP=19;VDB=0.0216;AF1=0.5;AC1=1;DP4=5,3,6,5;MQ=60;FQ=153;PV4=1,0.3,1,1 GT:PL:GQ 0/1:232,0,180:99 chr1 230923151 . T C 38 . DP=8;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=57;FQ=21;PV4=1,0.0015,0.29,1 GT:PL:GQ 0/1:68,0,48:51 chr1 230923187 . C G 79 . DP=17;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,0,7,2;MQ=57;FQ=81.9;PV4=0.47,0.0084,1,1 GT:PL:GQ 0/1:109,0,125:99 chr1 230923313 . C T 225 . DP=35;VDB=0.0393;AF1=0.5;AC1=1;DP4=3,10,10,11;MQ=59;FQ=191;PV4=0.28,0.0024,0.22,0.049 GT:PL:GQ 0/1:255,0,218:99 chr1 230928351 . C T 24 . DP=15;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,6,0,8;MQ=60;FQ=27;PV4=1,4.1e-09,1,0.21 GT:PL:GQ 0/1:54,0,123:57 chr1 230928512 . C G 40 . DP=41;VDB=0.0345;AF1=0.5;AC1=1;DP4=20,5,12,3;MQ=60;FQ=43;PV4=1,1.2e-14,1,1 GT:PL:GQ 0/1:70,0,255:73 chr1 230979657 . G A 143 . DP=32;VDB=0.0393;AF1=0.5;AC1=1;DP4=4,9,4,15;MQ=59;FQ=146;PV4=0.68,9.2e-07,1,0.07 GT:PL:GQ 0/1:173,0,216:99 chr1 231042732 . T A 95 . DP=51;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,16,6,20;MQ=60;FQ=98;PV4=0.37,6.6e-29,1,1 GT:PL:GQ 0/1:125,0,255:99 chr1 231057247 . A T 39 . DP=9;VDB=0.0199;AF1=0.5;AC1=1;DP4=0,6,0,3;MQ=60;FQ=42;PV4=1,0.24,1,1 GT:PL:GQ 0/1:69,0,131:72 chr1 231060736 . T C 145 . DP=53;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,17,8,21;MQ=60;FQ=148;PV4=1,1.8e-21,1,1 GT:PL:GQ 0/1:175,0,255:99 chr1 231064578 . tct tCTCct 24.5 . INDEL;DP=4;VDB=0.0014;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=53;FQ=27.5;PV4=1,1,0.21,0.099 GT:PL:GQ 0/1:62,0,98:65 chr1 231064611 . G A 99 . DP=11;VDB=0.0099;AF1=0.5;AC1=1;DP4=4,0,7,0;MQ=55;FQ=63;PV4=1,0.47,0.15,0.18 GT:PL:GQ 0/1:129,0,90:93 chr1 231067236 . C T 225 . DP=56;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,17,9,12;MQ=60;FQ=225;PV4=0.78,0.45,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 231067318 . G T 100 . DP=20;VDB=0.0025;AF1=0.5;AC1=1;DP4=2,10,0,8;MQ=60;FQ=103;PV4=0.49,0.13,1,1 GT:PL:GQ 0/1:130,0,220:99 chr1 231069652 . A C 4.13 . DP=17;VDB=0.0033;AF1=0.4998;AC1=1;DP4=0,10,0,7;MQ=60;FQ=6.2;PV4=1,4.3e-18,1,0.14 GT:PL:GQ 0/1:32,0,166:31 chr1 231081304 . T G 26 . DP=5;VDB=0.0003;AF1=0.5013;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-5.45;PV4=1,0.00084,1,0.31 GT:PL:GQ 0/1:56,0,23:26 chr1 231092180 . G A 225 . DP=43;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,8,12,12;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 231092211 . tgg tGgg 217 . INDEL;DP=43;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,11,9,16;MQ=60;FQ=181;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,216:99 chr1 231124055 . T C 178 . DP=29;VDB=0.0164;AF1=0.5;AC1=1;DP4=11,8,6,4;MQ=60;FQ=181;PV4=1,1,1,1 GT:PL:GQ 0/1:208,0,255:99 chr1 231155953 . T G 41 . DP=22;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,11,0,8;MQ=60;FQ=44;PV4=1,2.9e-11,1,0.35 GT:PL:GQ 0/1:71,0,194:74 chr1 231353589 . A G 164 . DP=24;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,8,15;MQ=60;FQ=-96 GT:PL:GQ 1/1:197,69,0:99 chr1 231362923 . G A 222 . DP=41;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,8,32;MQ=59;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 231376806 . G C 225 . DP=52;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,18,8,15;MQ=60;FQ=225;PV4=1,0.31,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 231377081 . C T 177 . DP=30;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,21,6;MQ=60;FQ=-108 GT:PL:GQ 1/1:210,81,0:99 chr1 231401204 . T C 131 . DP=34;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,28;MQ=59;FQ=-129 GT:PL:GQ 1/1:164,102,0:99 chr1 231401596 . T C 139 . DP=61;VDB=0.0190;AF1=1;AC1=2;DP4=0,1,6,48;MQ=59;FQ=-163;PV4=1,7e-06,1,1 GT:PL:GQ 1/1:172,136,0:99 chr1 231401902 . G A 222 . DP=72;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,40,28;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr1 231471268 . at a 52 . INDEL;DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:92,12,0:21 chr1 231480507 . A G 73 . DP=7;VDB=0.0393;AF1=0.501;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-4.75;PV4=1,0.29,1,1 GT:PL:GQ 0/1:103,0,24:27 chr1 231488524 . C T 127 . DP=90;VDB=0.0399;AF1=0.5;AC1=1;DP4=24,15,27,24;MQ=60;FQ=130;PV4=0.52,2e-38,0.19,0.43 GT:PL:GQ 0/1:157,0,255:99 chr1 231502310 . T C 176 . DP=16;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,2,2,9;MQ=59;FQ=80;PV4=0.24,1,0.26,0.11 GT:PL:GQ 0/1:206,0,107:99 chr1 231830295 . G A 186 . DP=91;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,23,23,21;MQ=60;FQ=189;PV4=0.83,9.5e-11,0.16,0.15 GT:PL:GQ 0/1:216,0,255:99 chr1 231936016 . A G 222 . DP=81;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,12,61;MQ=60;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr1 231954101 . C T 58 . DP=20;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,0,10,1;MQ=60;FQ=61;PV4=1,6.5e-09,1,1 GT:PL:GQ 0/1:88,0,148:91 chr1 231954872 . C T 3.54 . DP=6;VDB=0.0029;AF1=0.4998;AC1=1;DP4=2,2,1,1;MQ=56;FQ=5.47;PV4=1,0.079,1,0.006 GT:PL:GQ 0/1:31,0,122:30 chr1 231956086 . A T 222 . DP=25;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,11,13;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 232534957 . T C 153 . DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,11,14,9;MQ=60;FQ=156;PV4=1,3.1e-13,1,0.13 GT:PL:GQ 0/1:183,0,255:99 chr1 232535030 . C T 222 . DP=49;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,33;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 232551416 . G A 100 . DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,15,4,16;MQ=60;FQ=103;PV4=0.32,9.3e-12,1,1 GT:PL:GQ 0/1:130,0,255:99 chr1 232564297 . T A 138 . DP=35;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,7,9,9;MQ=59;FQ=141;PV4=0.74,6.5e-15,1,1 GT:PL:GQ 0/1:168,0,255:99 chr1 232568293 . A G 222 . DP=32;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,31;MQ=58;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr1 232650750 . A G 219 . DP=61;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,33,25;MQ=59;FQ=-202 GT:PL:GQ 1/1:252,175,0:99 chr1 232650867 . C T 191 . DP=113;VDB=0.0365;AF1=1;AC1=2;DP4=0,1,63,44;MQ=60;FQ=-282;PV4=0.42,0.0011,0.46,0.27 GT:PL:GQ 1/1:224,255,0:99 chr1 232941153 . C T 150 . DP=15;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,8,7;MQ=60;FQ=-72 GT:PL:GQ 1/1:183,45,0:87 chr1 233086394 . C G 38 . DP=8;VDB=0.0017;AF1=0.5;AC1=1;DP4=4,0,3,1;MQ=60;FQ=41;PV4=1,0.0014,1,1 GT:PL:GQ 0/1:68,0,93:71 chr1 233086456 . T C 191 . DP=26;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,2,9,4;MQ=60;FQ=160;PV4=0.64,1,1,0.45 GT:PL:GQ 0/1:221,0,187:99 chr1 233091463 . T A 64 . DP=22;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,8,3,4;MQ=59;FQ=67;PV4=1,7.3e-05,0.074,1 GT:PL:GQ 0/1:94,0,255:97 chr1 233113827 . G T 100 . DP=26;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,3,11,4;MQ=59;FQ=103;PV4=1,8.1e-09,1,0.063 GT:PL:GQ 0/1:130,0,185:99 chr1 233121791 . G A 225 . DP=25;VDB=0.0393;AF1=0.5;AC1=1;DP4=4,4,9,6;MQ=60;FQ=151;PV4=0.69,0.039,1,0.37 GT:PL:GQ 0/1:255,0,178:99 chr1 233122127 . C T 137 . DP=28;VDB=0.0216;AF1=0.5;AC1=1;DP4=10,1,13,4;MQ=58;FQ=132;PV4=0.62,2.5e-06,1,0.12 GT:PL:GQ 0/1:167,0,160:99 chr1 233134086 . C T 145 . DP=43;VDB=0.0271;AF1=0.5;AC1=1;DP4=12,8,15,7;MQ=60;FQ=148;PV4=0.75,5e-08,1,1 GT:PL:GQ 0/1:175,0,255:99 chr1 233150270 . T C 118 . DP=6;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:151,18,0:33 chr1 233152915 . CCAGG C 32.4 . INDEL;DP=3;VDB=0.0189;AF1=1;AC1=2;DP4=0,0,0,3;MQ=29;FQ=-43.5 GT:PL:GQ 1/1:72,9,0:16 chr1 233296891 . T C 77 . DP=16;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:110,39,0:75 chr1 233296908 . T G 87 . DP=23;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,20,3;MQ=60;FQ=-96 GT:PL:GQ 1/1:120,69,0:99 chr1 233362930 . G A 95 . DP=43;VDB=0.0190;AF1=0.5;AC1=1;DP4=17,2,21,2;MQ=60;FQ=98;PV4=1,2.2e-21,1,0.077 GT:PL:GQ 0/1:125,0,231:99 chr1 233397267 . G A 64 . DP=11;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,3,1,7;MQ=60;FQ=38;PV4=1,8.2e-06,1,1 GT:PL:GQ 0/1:94,0,65:68 chr1 233397752 . T C 81 . DP=27;VDB=0.0190;AF1=0.5;AC1=1;DP4=13,2,9,3;MQ=60;FQ=84;PV4=0.63,1.3e-09,1,1 GT:PL:GQ 0/1:111,0,230:99 chr1 233398670 . C A 32 . DP=18;VDB=0.0008;AF1=0.5;AC1=1;DP4=8,0,10,0;MQ=60;FQ=35;PV4=1,5.4e-13,1,0.49 GT:PL:GQ 0/1:62,0,147:65 chr1 233398713 . C T 45 . DP=43;VDB=0.0298;AF1=0.5;AC1=1;DP4=14,4,23,2;MQ=59;FQ=48;PV4=0.22,8.3e-26,0.2,1 GT:PL:GQ 0/1:75,0,255:78 chr1 233398927 . C G 57 . DP=33;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,15,0,16;MQ=58;FQ=60;PV4=1,1.3e-17,1,1 GT:PL:GQ 0/1:87,0,173:90 chr1 233398931 . G GC 25.5 . INDEL;DP=32;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,13,0,16;MQ=58;FQ=21.5;PV4=1,1,1,1 GT:PL:GQ 0/1:63,0,57:59 chr1 233431241 . G A 15.1 . DP=10;VDB=0.0287;AF1=0.5;AC1=1;DP4=0,6,0,4;MQ=60;FQ=18.1;PV4=1,0.0024,1,1 GT:PL:GQ 0/1:45,0,115:48 chr1 233489499 . A G 53 . DP=6;VDB=0.0126;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=19.1;PV4=1,1,1,1 GT:PL:GQ 0/1:83,0,46:49 chr1 233489529 . G A 33 . DP=8;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=60;FQ=33;PV4=1,0.018,1,1 GT:PL:GQ 0/1:63,0,63:63 chr1 233489707 . G T 90 . DP=38;VDB=0.0140;AF1=0.5;AC1=1;DP4=9,9,6,14;MQ=60;FQ=93;PV4=0.32,9.9e-15,1,1 GT:PL:GQ 0/1:120,0,255:99 chr1 233490536 . AA AATGTCTTGGGGATAATCTGA 124 . INDEL;DP=37;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,0,15,1;MQ=51;FQ=127;PV4=0.43,0.0006,2.9e-11,0.46 GT:PL:GQ 0/1:162,0,255:99 chr1 233490543 . G A 131 . DP=47;VDB=0.0380;AF1=0.5;AC1=1;DP4=23,2,14,3;MQ=51;FQ=134;PV4=0.38,0.013,1.2e-16,1 GT:PL:GQ 0/1:161,0,249:99 chr1 233490764 . G T 128 . DP=27;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,13,0,13;MQ=59;FQ=130;PV4=1,0.3,0.16,1 GT:PL:GQ 0/1:158,0,165:99 chr1 233490776 . C T 97 . DP=15;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,7,0,7;MQ=60;FQ=99.2;PV4=1,0.26,1,0.31 GT:PL:GQ 0/1:127,0,134:99 chr1 233512362 . A G 225 . DP=86;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,44,7,29;MQ=60;FQ=225;PV4=0.37,0.34,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 233514934 . G A 225 . DP=64;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,10,18,15;MQ=60;FQ=225;PV4=0.6,1,0.19,1 GT:PL:GQ 0/1:255,0,255:99 chr1 233514975 . G T 225 . DP=74;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,14,14,16;MQ=59;FQ=225;PV4=0.22,1,0.43,1 GT:PL:GQ 0/1:255,0,255:99 chr1 233515071 . C T 225 . DP=102;VDB=0.0322;AF1=0.5;AC1=1;DP4=38,16,31,13;MQ=60;FQ=225;PV4=1,0.033,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 233515102 . T G 172 . DP=112;VDB=0.0398;AF1=0.5;AC1=1;DP4=38,15,30,17;MQ=60;FQ=175;PV4=0.52,2.3e-21,1,0.49 GT:PL:GQ 0/1:202,0,255:99 chr1 233785786 . A C 222 . DP=56;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,14,41;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 234040742 . A C 87 . DP=36;VDB=0.0298;AF1=0.5;AC1=1;DP4=14,1,16,3;MQ=60;FQ=90;PV4=0.61,9.3e-14,1,1 GT:PL:GQ 0/1:117,0,195:99 chr1 234041422 . G C 125 . DP=194;VDB=0.0380;AF1=0.5;AC1=1;DP4=54,42,62,31;MQ=59;FQ=128;PV4=0.18,9.3e-78,0.27,0.5 GT:PL:GQ 0/1:155,0,255:99 chr1 234367549 . T C 46 . DP=15;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,9,2,4;MQ=60;FQ=49;PV4=0.14,0.00011,1,0.47 GT:PL:GQ 0/1:76,0,152:79 chr1 234509259 . G C 219 . DP=30;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,8,5,9;MQ=60;FQ=221;PV4=0.71,1,1,1 GT:PL:GQ 0/1:249,0,255:99 chr1 234529552 . C T 153 . DP=38;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,13,8,14;MQ=58;FQ=156;PV4=0.3,8e-12,0.38,1 GT:PL:GQ 0/1:183,0,224:99 chr1 234529570 . G A 148 . DP=34;VDB=0.0380;AF1=0.5;AC1=1;DP4=0,12,8,13;MQ=59;FQ=121;PV4=0.03,6.7e-12,0.14,1 GT:PL:GQ 0/1:178,0,148:99 chr1 234541622 . G T 71 . DP=25;VDB=0.0066;AF1=0.5;AC1=1;DP4=11,1,11,1;MQ=60;FQ=74;PV4=1,1.4e-07,1,1 GT:PL:GQ 0/1:101,0,186:99 chr1 234546245 . C T 225 . DP=44;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,11,11,12;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 234556630 . C T 71 . DP=8;VDB=0.0254;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=61.7;PV4=1,1,1,1 GT:PL:GQ 0/1:101,0,89:92 chr1 234556646 . T A 35 . DP=4;VDB=0.0174;AF1=0.5002;AC1=1;DP4=0,1,0,2;MQ=60;FQ=6.2;PV4=1,0.33,1,1 GT:PL:GQ 0/1:65,0,32:35 chr1 234582457 . C T 5.46 . DP=7;VDB=0.0003;AF1=0.4999;AC1=1;DP4=3,0,4,0;MQ=60;FQ=7.8;PV4=1,0.00053,1,1 GT:PL:GQ 0/1:34,0,69:34 chr1 234582461 . G A 18.1 . DP=7;VDB=0.0003;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=21;PV4=1,3e-05,1,1 GT:PL:GQ 0/1:48,0,80:51 chr1 234582651 . T C 172 . DP=109;VDB=0.0298;AF1=0.5;AC1=1;DP4=25,30,23,30;MQ=60;FQ=175;PV4=0.85,2.5e-43,0.49,1 GT:PL:GQ 0/1:202,0,255:99 chr1 234584231 . C T 117 . DP=102;VDB=0.0298;AF1=0.5;AC1=1;DP4=42,20,22,13;MQ=60;FQ=120;PV4=0.66,8.7e-43,0.092,1 GT:PL:GQ 0/1:147,0,255:99 chr1 234584445 . C T 4.13 . DP=3;VDB=0.0186;AF1=0.5001;AC1=1;DP4=0,1,0,2;MQ=60;FQ=3.48;PV4=1,0.032,1,1 GT:PL:GQ 0/1:32,0,30:30 chr1 234594947 . T C 225 . DP=52;VDB=0.0322;AF1=0.5;AC1=1;DP4=21,3,21,3;MQ=60;FQ=222;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,250:99 chr1 234744250 . G A 108 . DP=46;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,7,12,16;MQ=60;FQ=111;PV4=0.53,5e-20,1,1 GT:PL:GQ 0/1:138,0,255:99 chr1 234953834 . A C 6.02 . DP=2;VDB=0.0182;AF1=1;AC1=2;DP4=0,0,0,2;MQ=29;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr1 234953875 . CAA CAAA 88.6 . INDEL;DP=6;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,3,3;MQ=26;FQ=-52.5 GT:PL:GQ 1/1:129,18,0:33 chr1 235285740 . C T 44 . DP=21;VDB=0.0053;AF1=0.5;AC1=1;DP4=4,10,3,4;MQ=60;FQ=47;PV4=0.64,7.2e-09,1,1 GT:PL:GQ 0/1:74,0,255:77 chr1 235357303 . A ATG 42.5 . INDEL;DP=16;VDB=0.0053;AF1=0.5;AC1=1;DP4=8,0,6,0;MQ=49;FQ=45.5;PV4=1,0.0002,0,1 GT:PL:GQ 0/1:80,0,218:83 chr1 235357543 . A G 3.01 . DP=14;VDB=0.0053;AF1=0.4997;AC1=1;DP4=0,4,0,5;MQ=60;FQ=4.77;PV4=1,1.4e-05,1,0.04 GT:PL:GQ 0/1:30,0,96:28 chr1 235383188 . A G 225 . DP=40;VDB=0.0164;AF1=0.5;AC1=1;DP4=5,17,4,13;MQ=59;FQ=225;PV4=1,1,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 235392546 . T C 45 . DP=76;VDB=0.0392;AF1=0.5;AC1=1;DP4=41,6,25,3;MQ=60;FQ=48;PV4=1,1.1e-35,1,1 GT:PL:GQ 0/1:75,0,255:78 chr1 235505313 . ATTTTTTT ATTTTTTTT 9.05 . INDEL;DP=18;VDB=0.0042;AF1=0.5006;AC1=1;DP4=8,0,8,2;MQ=60;FQ=-9.13;PV4=0.48,1,1,0.11 GT:PL:GQ 0/1:46,0,26:30 chr1 235543476 . Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 15.4 . INDEL;DP=36;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,2;MQ=47;FQ=-40.5 GT:PL:GQ 1/1:54,6,0:10 chr1 235594182 . A G 39 . DP=7;VDB=0.0399;AF1=0.5;AC1=1;DP4=0,2,1,4;MQ=60;FQ=24.9;PV4=1,0.00041,1,1 GT:PL:GQ 0/1:69,0,52:55 chr1 235598973 . C T 44 . DP=16;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,0,8,0;MQ=60;FQ=47;PV4=1,2.1e-07,1,0.42 GT:PL:GQ 0/1:74,0,134:77 chr1 235601958 . G T 67 . DP=8;VDB=0.0126;AF1=0.5;AC1=1;DP4=3,1,4,0;MQ=60;FQ=69.9;PV4=1,0.37,1,1 GT:PL:GQ 0/1:97,0,113:99 chr1 235628908 . G A 222 . DP=18;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,6;MQ=57;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr1 235647631 . G T 54 . DP=21;VDB=0.0042;AF1=0.5;AC1=1;DP4=5,0,16,0;MQ=60;FQ=55.6;PV4=1,9.1e-12,1,0.3 GT:PL:GQ 0/1:84,0,88:86 chr1 235652513 . T C 74 . DP=139;VDB=0.0345;AF1=0.5;AC1=1;DP4=56,23,47,11;MQ=60;FQ=77;PV4=0.23,1.4e-57,0.41,1 GT:PL:GQ 0/1:104,0,255:99 chr1 235715523 . A G 123 . DP=24;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,8,4,12;MQ=59;FQ=84;PV4=0.26,9.9e-06,1,1 GT:PL:GQ 0/1:153,0,111:99 chr1 235715556 . C G 127 . DP=10;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,3,1,6;MQ=60;FQ=17.1;PV4=1,1,1,1 GT:PL:GQ 0/1:157,0,44:47 chr1 235747005 . C T 6.98 . DP=14;VDB=0.0161;AF1=0.4999;AC1=1;DP4=10,0,3,1;MQ=60;FQ=9.53;PV4=0.29,1.5e-06,1,1 GT:PL:GQ 0/1:36,0,158:37 chr1 235747154 . A G 41 . DP=43;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,23,3,11;MQ=60;FQ=44;PV4=1,4.6e-14,1,0.4 GT:PL:GQ 0/1:71,0,255:74 chr1 235878431 . Agttgttgttgttgttgttgttgtt AGTTgttgttgttgttgttgttgttgtt 58.5 . INDEL;DP=5;VDB=0.0019;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=61.5;PV4=1,1,1,1 GT:PL:GQ 0/1:96,0,137:99 chr1 235918688 . caaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaa cAAAAGaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaa 209 . INDEL;DP=12;VDB=0.0008;AF1=0.5;AC1=1;DP4=4,0,5,1;MQ=60;FQ=125;PV4=1,1,1,0.13 GT:PL:GQ 0/1:247,0,160:99 chr1 235993709 . G A 113 . DP=57;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,21,3,25;MQ=60;FQ=116;PV4=0.3,5e-22,0.16,0.042 GT:PL:GQ 0/1:143,0,255:99 chr1 236141174 . T C 162 . DP=46;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,13,10,13;MQ=60;FQ=165;PV4=1,4.7e-18,1,1 GT:PL:GQ 0/1:192,0,255:99 chr1 236142253 . T G 163 . DP=67;VDB=0.0322;AF1=0.5;AC1=1;DP4=29,6,23,9;MQ=60;FQ=166;PV4=0.38,2.2e-20,1,0.38 GT:PL:GQ 0/1:193,0,255:99 chr1 236142565 . T C 36 . DP=15;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,8,0,7;MQ=60;FQ=39;PV4=1,6.7e-08,1,1 GT:PL:GQ 0/1:66,0,139:69 chr1 236142570 . C G 4.77 . DP=12;VDB=0.0006;AF1=0.4999;AC1=1;DP4=0,7,0,5;MQ=60;FQ=6.99;PV4=1,2.1e-06,1,1 GT:PL:GQ 0/1:33,0,133:33 chr1 236144951 . A G 84 . DP=46;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,14,9,9;MQ=60;FQ=87;PV4=1,7.4e-17,1,1 GT:PL:GQ 0/1:114,0,255:99 chr1 236154365 . G T 11.3 . DP=8;VDB=0.0180;AF1=0.5;AC1=1;DP4=2,2,1,3;MQ=60;FQ=14.2;PV4=1,0.00043,1,1 GT:PL:GQ 0/1:41,0,107:43 chr1 236157277 . T G 49 . DP=19;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,9,0,8;MQ=60;FQ=52;PV4=0.49,0.00013,1,1 GT:PL:GQ 0/1:79,0,198:82 chr1 236305885 . G A 37.5 . DP=4;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:70,12,0:21 chr1 236368391 . CT CTT 209 . INDEL;DP=35;VDB=0.0190;AF1=0.5;AC1=1;DP4=15,2,15,3;MQ=60;FQ=159;PV4=1,1,1,1 GT:PL:GQ 0/1:247,0,194:99 chr1 236368708 . T C 14.9 . DP=2;VDB=0.0182;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:46,6,0:10 chr1 236381825 . G C 62 . DP=5;VDB=0.0225;AF1=0.5;AC1=1;DP4=1,1,2,1;MQ=60;FQ=38;PV4=1,0.037,1,1 GT:PL:GQ 0/1:92,0,65:68 chr1 236381897 . T A 8.64 . DP=5;VDB=0.0225;AF1=0.5;AC1=1;DP4=0,2,1,1;MQ=60;FQ=11.3;PV4=1,0.018,1,0.21 GT:PL:GQ 0/1:38,0,63:40 chr1 236384278 . G C 6.98 . DP=8;VDB=0.0040;AF1=0.4999;AC1=1;DP4=0,5,0,3;MQ=60;FQ=9.53;PV4=1,0.037,1,0.39 GT:PL:GQ 0/1:36,0,106:37 chr1 236385165 . G C 61 . DP=22;VDB=0.0081;AF1=0.5;AC1=1;DP4=11,0,11,0;MQ=60;FQ=64;PV4=1,6.9e-08,1,1 GT:PL:GQ 0/1:91,0,160:94 chr1 236385360 . C T 93 . DP=44;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,20,1,20;MQ=60;FQ=96;PV4=1,6.8e-09,1,1 GT:PL:GQ 0/1:123,0,226:99 chr1 236385379 . A G 34 . DP=31;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,13,0,17;MQ=60;FQ=37;PV4=0.45,4.3e-15,1,0.2 GT:PL:GQ 0/1:64,0,189:67 chr1 236393654 . A G 133 . DP=9;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:166,24,0:45 chr1 236413147 . T C 134 . DP=22;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,1,10,1;MQ=60;FQ=137;PV4=1,0.086,1,0.25 GT:PL:GQ 0/1:164,0,191:99 chr1 236413230 . T A 128 . DP=47;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,10,16,11;MQ=60;FQ=131;PV4=0.55,6.6e-24,1,0.25 GT:PL:GQ 0/1:158,0,255:99 chr1 236413282 . G A 121 . DP=35;VDB=0.0359;AF1=0.5;AC1=1;DP4=5,17,0,12;MQ=60;FQ=124;PV4=0.14,1,1,0.12 GT:PL:GQ 0/1:151,0,255:99 chr1 236413362 . C T 36 . DP=10;VDB=0.0059;AF1=0.5;AC1=1;DP4=0,6,0,3;MQ=60;FQ=39;PV4=1,0.00074,1,0.14 GT:PL:GQ 0/1:66,0,132:69 chr1 236415347 . T C 103 . DP=49;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,23,4,14;MQ=60;FQ=106;PV4=1,8.4e-16,1,0.47 GT:PL:GQ 0/1:133,0,255:99 chr1 236416921 . C T 31 . DP=17;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,7,1,7;MQ=60;FQ=34;PV4=1,6.2e-08,1,1 GT:PL:GQ 0/1:61,0,127:64 chr1 236433135 . AT A 214 . INDEL;DP=18;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,6;MQ=60;FQ=-88.5 GT:PL:GQ 1/1:255,54,0:99 chr1 236444973 . C T 89 . DP=10;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,1,5,2;MQ=58;FQ=23;PV4=1,0.28,1,1 GT:PL:GQ 0/1:119,0,50:53 chr1 236557771 . G A 96 . DP=56;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,14,16,9;MQ=59;FQ=99;PV4=0.58,2.9e-20,0.23,1 GT:PL:GQ 0/1:126,0,255:99 chr1 236572389 . G A 6.79 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:37,6,0:7 chr1 236572475 . A G 123 . DP=38;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,29,6;MQ=59;FQ=-132 GT:PL:GQ 1/1:156,105,0:99 chr1 236590497 . C G 58.1 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:91,18,0:33 chr1 236590563 . C T 171 . DP=16;VDB=0.0325;AF1=1;AC1=2;DP4=0,0,8,7;MQ=60;FQ=-72 GT:PL:GQ 1/1:204,45,0:87 chr1 236590629 . C T 222 . DP=19;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,11;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr1 236590659 . G C 222 . DP=15;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,8,5;MQ=60;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr1 236590816 . T G 78 . DP=9;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:111,27,0:51 chr1 236645670 . C T 222 . DP=65;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,28,36;MQ=59;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr1 236700807 . T A 52 . DP=109;VDB=0.0322;AF1=0.5;AC1=1;DP4=51,20,24,6;MQ=60;FQ=55;PV4=0.46,1.2e-29,0.014,1 GT:PL:GQ 0/1:82,0,255:85 chr1 236700823 . T C 95 . DP=120;VDB=0.0322;AF1=0.5;AC1=1;DP4=48,24,34,10;MQ=59;FQ=98;PV4=0.29,5.3e-34,0.012,0.096 GT:PL:GQ 0/1:125,0,255:99 chr1 236700857 . C T 225 . DP=124;VDB=0.0271;AF1=0.5;AC1=1;DP4=41,33,30,17;MQ=60;FQ=225;PV4=0.45,1,0.037,1 GT:PL:GQ 0/1:255,0,255:99 chr1 236700982 . T C 128 . DP=67;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,25,8,30;MQ=59;FQ=131;PV4=0.33,5.9e-26,0.11,1 GT:PL:GQ 0/1:158,0,250:99 chr1 236702374 . G C 91 . DP=11;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,3,2,3;MQ=60;FQ=94;PV4=1,0.16,1,1 GT:PL:GQ 0/1:121,0,164:99 chr1 236703767 . C T 43 . DP=3;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:75,9,0:16 chr1 236706352 . A C 60 . DP=49;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,21,2,20;MQ=59;FQ=63;PV4=0.43,2.9e-15,0.061,1 GT:PL:GQ 0/1:90,0,255:93 chr1 236706371 . A G 183 . DP=40;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,17,2,15;MQ=60;FQ=186;PV4=1,0.051,1,1 GT:PL:GQ 0/1:213,0,255:99 chr1 236706780 . C T 29 . DP=24;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,6,7,0;MQ=60;FQ=32;PV4=0.12,5.9e-08,1,1 GT:PL:GQ 0/1:59,0,255:62 chr1 236706862 . G C 97 . DP=36;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,6,9,7;MQ=60;FQ=100;PV4=0.73,2.9e-09,1,1 GT:PL:GQ 0/1:127,0,255:99 chr1 236708037 . T C 22 . DP=12;VDB=0.0019;AF1=0.5;AC1=1;DP4=5,0,5,0;MQ=60;FQ=25;PV4=1,0.00027,1,0.34 GT:PL:GQ 0/1:52,0,113:55 chr1 236708224 . A C 154 . DP=35;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,9,7,16;MQ=59;FQ=127;PV4=0.38,3.5e-11,0.26,0.29 GT:PL:GQ 0/1:184,0,154:99 chr1 236708318 . T C 4.77 . DP=7;VDB=0.0244;AF1=0.5005;AC1=1;DP4=0,1,0,4;MQ=55;FQ=-3.99;PV4=1,0.0006,0.34,1 GT:PL:GQ 0/1:33,0,26:29 chr1 236711323 . T C 38 . DP=8;VDB=0.0110;AF1=0.5;AC1=1;DP4=4,0,3,1;MQ=57;FQ=40.8;PV4=1,0.046,1,1 GT:PL:GQ 0/1:68,0,81:71 chr1 236711586 . G A 57 . DP=11;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,1,0,8;MQ=60;FQ=14.2;PV4=0.2,0.002,1,1 GT:PL:GQ 0/1:87,0,41:44 chr1 236716741 . G A 31 . DP=6;VDB=0.0002;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=22.7;PV4=1,0.0003,1,1 GT:PL:GQ 0/1:61,0,50:53 chr1 236716959 . C T 133 . DP=50;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,18,5,17;MQ=60;FQ=136;PV4=0.37,1.9e-16,1,1 GT:PL:GQ 0/1:163,0,255:99 chr1 236717926 . T C 111 . DP=73;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,18,17,25;MQ=60;FQ=114;PV4=1,3.4e-31,1,1 GT:PL:GQ 0/1:141,0,255:99 chr1 236718561 . G A 9.52 . DP=14;VDB=0.0025;AF1=0.5;AC1=1;DP4=8,1,5,0;MQ=60;FQ=12.3;PV4=1,4.7e-09,1,1 GT:PL:GQ 0/1:39,0,187:41 chr1 236718620 . T C 72 . DP=48;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,6,21,2;MQ=60;FQ=75;PV4=0.24,3.2e-17,0.16,1 GT:PL:GQ 0/1:102,0,255:99 chr1 236719135 . T C 56 . DP=72;VDB=0.0392;AF1=0.5;AC1=1;DP4=35,4,31,2;MQ=60;FQ=59;PV4=0.68,2.4e-26,1,1 GT:PL:GQ 0/1:86,0,255:89 chr1 236719193 . A G 225 . DP=123;VDB=0.0298;AF1=0.5;AC1=1;DP4=49,21,38,13;MQ=60;FQ=225;PV4=0.68,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 236720467 . G A 67 . DP=9;VDB=0.0003;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=67.9;PV4=1,0.45,1,0.38 GT:PL:GQ 0/1:97,0,99:98 chr1 236721610 . G A 23 . DP=44;VDB=0.0216;AF1=0.5;AC1=1;DP4=24,0,16,0;MQ=60;FQ=26;PV4=1,1.2e-20,1,1 GT:PL:GQ 0/1:53,0,181:56 chr1 236721660 . T C 157 . DP=86;VDB=0.0380;AF1=0.5;AC1=1;DP4=36,8,30,8;MQ=60;FQ=160;PV4=0.79,2e-15,0.14,1 GT:PL:GQ 0/1:187,0,255:99 chr1 236721731 . T C 222 . DP=119;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,62,53;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 236722182 . A T 36.1 . DP=6;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:69,18,0:33 chr1 236724504 . G A 28 . DP=16;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,3,6,1;MQ=60;FQ=31;PV4=0.58,1.1e-06,1,0.18 GT:PL:GQ 0/1:58,0,199:61 chr1 236724605 . G T 131 . DP=51;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,9,14,14;MQ=60;FQ=134;PV4=0.58,8.4e-24,1,1 GT:PL:GQ 0/1:161,0,255:99 chr1 236724715 . T G 107 . DP=16;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,9,1,6;MQ=60;FQ=110;PV4=0.44,0.29,1,0.17 GT:PL:GQ 0/1:137,0,156:99 chr1 236729956 . T C 225 . DP=47;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,15,10,12;MQ=60;FQ=225;PV4=0.77,0.072,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 236739416 . C T 186 . DP=23;VDB=0.0081;AF1=0.5;AC1=1;DP4=8,2,11,2;MQ=60;FQ=170;PV4=1,0.19,1,1 GT:PL:GQ 0/1:216,0,197:99 chr1 236740039 . G C 157 . DP=24;VDB=0.0216;AF1=0.5;AC1=1;DP4=10,1,10,2;MQ=60;FQ=155;PV4=1,0.0069,1,1 GT:PL:GQ 0/1:187,0,184:99 chr1 236744712 . C A 89 . DP=32;VDB=0.0014;AF1=0.5;AC1=1;DP4=1,15,1,14;MQ=60;FQ=92;PV4=1,0.0027,1,0.057 GT:PL:GQ 0/1:119,0,178:99 chr1 236746275 . G C 225 . DP=44;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,17,4,15;MQ=60;FQ=225;PV4=0.73,0.36,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 236746443 . C T 148 . DP=26;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,7,7,8;MQ=59;FQ=151;PV4=0.7,1.9e-07,0.2,1 GT:PL:GQ 0/1:178,0,205:99 chr1 236748433 . G A 177 . DP=181;VDB=0.0380;AF1=0.5;AC1=1;DP4=54,21,69,37;MQ=60;FQ=180;PV4=0.34,2.2e-56,1,0.48 GT:PL:GQ 0/1:207,0,255:99 chr1 236748505 . T C 174 . DP=194;VDB=0.0400;AF1=0.5;AC1=1;DP4=33,49,42,65;MQ=60;FQ=177;PV4=1,2.2e-69,1,0.024 GT:PL:GQ 0/1:204,0,255:99 chr1 236748570 . T C 46 . DP=93;VDB=0.0118;AF1=0.5;AC1=1;DP4=12,43,5,32;MQ=60;FQ=49;PV4=0.41,7.8e-38,1,1 GT:PL:GQ 0/1:76,0,255:79 chr1 236748630 . C T 62 . DP=9;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=58.8;PV4=1,1,1,1 GT:PL:GQ 0/1:92,0,87:89 chr1 236749626 . C T 68 . DP=23;VDB=0.0190;AF1=0.5;AC1=1;DP4=9,2,10,2;MQ=60;FQ=71;PV4=1,5.2e-12,1,1 GT:PL:GQ 0/1:98,0,198:99 chr1 236749817 . C T 29 . DP=9;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,4,1,4;MQ=60;FQ=32;PV4=1,1.2e-06,1,0.08 GT:PL:GQ 0/1:59,0,101:62 chr1 236755170 . G T 225 . DP=59;VDB=0.0164;AF1=0.5;AC1=1;DP4=23,4,25,5;MQ=60;FQ=225;PV4=1,0.14,1,0.41 GT:PL:GQ 0/1:255,0,255:99 chr1 236755427 . A G 15.1 . DP=18;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,10,0,8;MQ=60;FQ=18.1;PV4=1,4.8e-07,1,1 GT:PL:GQ 0/1:45,0,152:48 chr1 236755814 . G A 225 . DP=24;VDB=0.0164;AF1=0.5;AC1=1;DP4=7,2,11,4;MQ=60;FQ=154;PV4=1,0.43,1,1 GT:PL:GQ 0/1:255,0,181:99 chr1 236755837 . C T 152 . DP=30;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,6,8,11;MQ=60;FQ=155;PV4=1,2.5e-07,1,0.4 GT:PL:GQ 0/1:182,0,203:99 chr1 236757229 . G A 37 . DP=10;VDB=0.0177;AF1=0.5;AC1=1;DP4=7,0,3,0;MQ=60;FQ=40;PV4=1,0.066,1,0.34 GT:PL:GQ 0/1:67,0,146:70 chr1 236758887 . T C 225 . DP=79;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,15,28,17;MQ=60;FQ=225;PV4=0.49,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 236759060 . T C 72 . DP=18;VDB=0.0284;AF1=0.5;AC1=1;DP4=6,3,5,3;MQ=60;FQ=75;PV4=1,4.4e-11,1,0.36 GT:PL:GQ 0/1:102,0,212:99 chr1 236763031 . C T 115 . DP=14;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,6,0,8;MQ=60;FQ=82;PV4=1,1,1,1 GT:PL:GQ 0/1:145,0,109:99 chr1 236767181 . G GA 14.6 . INDEL;DP=39;VDB=0.0345;AF1=0.5;AC1=1;DP4=20,7,6,2;MQ=60;FQ=17.6;PV4=1,0.18,1,0.44 GT:PL:GQ 0/1:52,0,165:55 chr1 236849952 . C T 39 . DP=8;VDB=0.0215;AF1=0.5;AC1=1;DP4=5,0,2,1;MQ=60;FQ=42;PV4=0.37,1,1,1 GT:PL:GQ 0/1:69,0,97:72 chr1 236882110 . G A 128 . DP=32;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,22,6;MQ=60;FQ=-111 GT:PL:GQ 1/1:161,84,0:99 chr1 236882303 . T C 171 . DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,11;MQ=60;FQ=-72 GT:PL:GQ 1/1:204,45,0:87 chr1 236883240 . T C 15.9 . DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:47,6,0:10 chr1 236883421 . C T 222 . DP=33;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,24,9;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 236883564 . G A 172 . DP=16;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:205,39,0:75 chr1 236897633 . A G 99 . DP=28;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,19,3;MQ=59;FQ=-93 GT:PL:GQ 1/1:132,66,0:99 chr1 236899899 . TCCCCC TCCCC 131 . INDEL;DP=40;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,4,31;MQ=59;FQ=-140 GT:PL:GQ 1/1:172,105,0:99 chr1 236900018 . G A 76 . DP=10;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,3,2,4;MQ=60;FQ=47;PV4=0.5,3.9e-05,1,0.27 GT:PL:GQ 0/1:106,0,74:77 chr1 236902560 . C T 112 . DP=47;VDB=0.0190;AF1=0.5;AC1=1;DP4=14,3,25,3;MQ=60;FQ=115;PV4=0.66,6.3e-05,1,0.082 GT:PL:GQ 0/1:142,0,200:99 chr1 236902594 . C G 197 . DP=76;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,54,21;MQ=60;FQ=-253 GT:PL:GQ 1/1:230,226,0:99 chr1 236902865 . A C 109 . DP=43;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,11,8,12;MQ=60;FQ=112;PV4=0.76,1.8e-15,1,0.41 GT:PL:GQ 0/1:139,0,255:99 chr1 236902955 . T C 45 . DP=14;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,5,2,6;MQ=60;FQ=48;PV4=1,0.00042,1,0.33 GT:PL:GQ 0/1:75,0,130:78 chr1 236910863 . T C 38.8 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:70,6,0:10 chr1 236911137 . A G 179 . DP=33;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,10,1,19;MQ=60;FQ=180;PV4=0.28,1,1,1 GT:PL:GQ 0/1:209,0,211:99 chr1 236912597 . A G 219 . DP=34;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,10,3,15;MQ=60;FQ=221;PV4=0.25,0.29,1,0.4 GT:PL:GQ 0/1:249,0,255:99 chr1 236924506 . A G 198 . DP=54;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,11,40;MQ=60;FQ=-181 GT:PL:GQ 1/1:231,154,0:99 chr1 236972186 . A G 225 . DP=41;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,17,3,20;MQ=59;FQ=170;PV4=0.62,0.48,1,0.49 GT:PL:GQ 0/1:255,0,197:99 chr1 236978992 . TTCT TTCTGTCT 217 . INDEL;DP=51;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,25,3,19;MQ=58;FQ=217;PV4=0.32,1,0.0047,0.24 GT:PL:GQ 0/1:255,0,255:99 chr1 237038161 . T C 225 . DP=35;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,10,5,14;MQ=59;FQ=222;PV4=0.72,1,1,1 GT:PL:GQ 0/1:255,0,250:99 chr1 237048500 . A G 103 . DP=44;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,16,4,22;MQ=60;FQ=106;PV4=0.63,8.4e-14,1,0.37 GT:PL:GQ 0/1:133,0,185:99 chr1 237048562 . G A 86 . DP=8;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,2,0,5;MQ=60;FQ=26;PV4=1,0.22,1,1 GT:PL:GQ 0/1:116,0,53:56 chr1 237057608 . G A 209 . DP=35;VDB=0.0216;AF1=0.5;AC1=1;DP4=12,1,20,2;MQ=60;FQ=158;PV4=1,0.047,1,0.36 GT:PL:GQ 0/1:239,0,185:99 chr1 237058828 . C T 149 . DP=39;VDB=0.0393;AF1=0.5;AC1=1;DP4=8,11,7,11;MQ=59;FQ=152;PV4=1,1.5e-09,0.071,1 GT:PL:GQ 0/1:179,0,255:99 chr1 237060433 . G T 60 . DP=70;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,35,3,23;MQ=59;FQ=63;PV4=1,1.2e-24,1,1 GT:PL:GQ 0/1:90,0,255:93 chr1 237063335 . G C 177 . DP=64;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,11,22,17;MQ=60;FQ=180;PV4=0.8,1.2e-23,1,0.044 GT:PL:GQ 0/1:207,0,255:99 chr1 237504759 . T C 9.52 . DP=8;VDB=0.0053;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=60;FQ=12.3;PV4=1,4e-06,1,0.48 GT:PL:GQ 0/1:39,0,78:41 chr1 237516073 . T C 107 . DP=16;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,0,5,1;MQ=60;FQ=110;PV4=0.4,1,1,0.35 GT:PL:GQ 0/1:137,0,152:99 chr1 237532763 . T G 39 . DP=30;VDB=0.0271;AF1=0.5;AC1=1;DP4=16,1,13,0;MQ=60;FQ=42;PV4=1,1.8e-12,1,1 GT:PL:GQ 0/1:69,0,206:72 chr1 237540615 . A C 225 . DP=69;VDB=0.0393;AF1=0.5;AC1=1;DP4=29,4,25,8;MQ=60;FQ=225;PV4=0.34,0.0065,1,0.045 GT:PL:GQ 0/1:255,0,255:99 chr1 237580606 . G T 36.8 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:68,6,0:10 chr1 237617757 . C T 168 . DP=109;VDB=0.0398;AF1=0.5;AC1=1;DP4=41,23,28,17;MQ=59;FQ=171;PV4=0.84,9.2e-31,1,1 GT:PL:GQ 0/1:198,0,255:99 chr1 237620049 . T C 145 . DP=80;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,28,8,27;MQ=60;FQ=148;PV4=0.22,1.7e-26,1,0.47 GT:PL:GQ 0/1:175,0,255:99 chr1 237670140 . A G 130 . DP=61;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,22,7,17;MQ=60;FQ=133;PV4=0.42,1.8e-19,1,0.33 GT:PL:GQ 0/1:160,0,255:99 chr1 237711644 . T C 97.3 . DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,5,0;MQ=55;FQ=-42 GT:PL:GQ 1/1:130,15,0:27 chr1 237711797 . A G 222 . DP=55;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,30,20;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 237730124 . A G 222 . DP=14;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,2,12;MQ=60;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr1 237755188 . C T 104 . DP=113;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,46,7,45;MQ=60;FQ=107;PV4=0.23,5.7e-48,1,1 GT:PL:GQ 0/1:134,0,255:99 chr1 237755203 . T C 51 . DP=90;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,41,2,35;MQ=60;FQ=54;PV4=0.29,5.9e-44,1,1 GT:PL:GQ 0/1:81,0,255:84 chr1 237765470 . A T 11.3 . DP=8;VDB=0.0392;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=60;FQ=14.2;PV4=1,1.4e-06,1,1 GT:PL:GQ 0/1:41,0,77:43 chr1 237794603 . A G 25.5 . DP=6;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:58,12,0:21 chr1 237796759 . G C 27 . DP=4;VDB=0.0184;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=26.5;PV4=1,1,1,1 GT:PL:GQ 0/1:57,0,56:56 chr1 237796837 . G A 86 . DP=30;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,2,18,1;MQ=60;FQ=89;PV4=0.27,1.1e-10,1,1 GT:PL:GQ 0/1:116,0,177:99 chr1 237801770 . T C 219 . DP=70;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,56;MQ=59;FQ=-238 GT:PL:GQ 1/1:252,211,0:99 chr1 237802559 . T C 222 . DP=27;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,6,20;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 237814783 . C T 183 . DP=31;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,11,2,12;MQ=60;FQ=186;PV4=0.24,0.14,1,0.16 GT:PL:GQ 0/1:213,0,255:99 chr1 237817784 . A G 38 . DP=17;VDB=0.0019;AF1=0.5;AC1=1;DP4=2,6,0,9;MQ=60;FQ=41;PV4=0.21,7e-10,1,1 GT:PL:GQ 0/1:68,0,180:71 chr1 237824332 . G A 8.61 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:40,9,0:12 chr1 237831103 . C A 33 . DP=3;VDB=0.0225;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:65,9,0:16 chr1 237862164 . G C 221 . DP=15;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,14,1;MQ=60;FQ=-72 GT:PL:GQ 1/1:254,45,0:87 chr1 237863439 . G A 3.98 . DP=2;VDB=0.0141;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr1 237863718 . T G 222 . DP=38;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,11,25;MQ=57;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 237865203 . C T 222 . DP=20;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,17,2;MQ=59;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr1 237881770 . C T 222 . DP=41;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,20,19;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 237890437 . C T 222 . DP=77;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,37,38;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr1 237893674 . C T 222 . DP=59;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,19,38;MQ=59;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr1 237923053 . C T 222 . DP=65;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,44,18;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 237946964 . T C 23 . DP=35;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,3,16,0;MQ=58;FQ=26;PV4=0.23,2.3e-13,1,0.49 GT:PL:GQ 0/1:53,0,231:56 chr1 237951451 . A G 68 . DP=57;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,19,1,36;MQ=60;FQ=71;PV4=1,1.1e-31,1,1 GT:PL:GQ 0/1:98,0,157:99 chr1 237957146 . G A 225 . DP=33;VDB=0.0066;AF1=0.5;AC1=1;DP4=9,3,18,3;MQ=60;FQ=188;PV4=0.64,1,1,0.4 GT:PL:GQ 0/1:255,0,215:99 chr1 237957161 . A G 225 . DP=49;VDB=0.0190;AF1=0.5;AC1=1;DP4=16,3,24,5;MQ=60;FQ=210;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,237:99 chr1 237957309 . A C 134 . DP=56;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,24,7,19;MQ=60;FQ=137;PV4=0.52,4.8e-22,1,0.13 GT:PL:GQ 0/1:164,0,255:99 chr1 237993724 . C T 52 . DP=4;VDB=0.0050;AF1=0.5008;AC1=1;DP4=1,0,2,1;MQ=54;FQ=-4.12;PV4=1,0.19,0.33,1 GT:PL:GQ 0/1:82,0,25:28 chr1 238045995 . T C 136 . DP=63;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,8,20,8;MQ=59;FQ=139;PV4=0.77,6.6e-29,0.45,0.39 GT:PL:GQ 0/1:166,0,255:99 chr1 238048325 . A G 14.9 . DP=2;VDB=0.0178;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:46,6,0:10 chr1 238051933 . C T 4.13 . DP=3;VDB=0.0171;AF1=0.5;AC1=1;DP4=0,1,0,2;MQ=60;FQ=4.13;PV4=1,0.029,1,0.42 GT:PL:GQ 0/1:32,0,32:31 chr1 240255203 . G T 5.46 . DP=3;VDB=0.0018;AF1=0.5005;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-3.9;PV4=1,0.13,1,0.052 GT:PL:GQ 0/1:34,0,26:30 chr1 240255568 . gggcggcggcggcggcgg gggcggcggcggcgg 214 . INDEL;DP=26;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,16,7;MQ=59;FQ=-104 GT:PL:GQ 1/1:255,69,0:99 chr1 240256822 . C A 71 . DP=19;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,8,0,10;MQ=60;FQ=74;PV4=1,0.00012,1,1 GT:PL:GQ 0/1:101,0,124:99 chr1 240351628 . T C 109 . DP=95;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,37,8,32;MQ=60;FQ=112;PV4=0.47,7e-28,1,0.45 GT:PL:GQ 0/1:139,0,255:99 chr1 240408789 . G A 225 . DP=42;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,7,14,10;MQ=60;FQ=225;PV4=1,0.13,1,0.31 GT:PL:GQ 0/1:255,0,255:99 chr1 240421383 . G A 46 . DP=10;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:79,30,0:57 chr1 240448434 . G T 99 . DP=63;VDB=0.0365;AF1=0.5;AC1=1;DP4=24,9,18,11;MQ=60;FQ=102;PV4=0.42,1.3e-27,1,0.069 GT:PL:GQ 0/1:129,0,255:99 chr1 240492543 . G A 144 . DP=37;VDB=0.0384;AF1=0.5;AC1=1;DP4=10,6,11,8;MQ=60;FQ=147;PV4=1,9.6e-13,1,0.32 GT:PL:GQ 0/1:174,0,255:99 chr1 240492734 . G A 225 . DP=121;VDB=0.0399;AF1=0.5;AC1=1;DP4=23,37,20,40;MQ=60;FQ=225;PV4=0.7,0.15,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 240497265 . A C 202 . DP=39;VDB=0.0384;AF1=0.5;AC1=1;DP4=13,10,6,8;MQ=59;FQ=205;PV4=0.51,0.11,0.1,0.47 GT:PL:GQ 0/1:232,0,255:99 chr1 240497598 . T C 93 . DP=8;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=60;FQ=49;PV4=1,1,1,1 GT:PL:GQ 0/1:123,0,76:79 chr1 240601269 . A G 222 . DP=30;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,29,1;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 240637571 . A G 225 . DP=89;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,36,8,33;MQ=60;FQ=225;PV4=0.8,0.38,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 240643167 . A C 9.52 . DP=5;VDB=0.0080;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=12.2;PV4=1,0.0015,1,1 GT:PL:GQ 0/1:39,0,55:41 chr1 240643184 . C T 11.3 . DP=6;VDB=0.0126;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=9.74;PV4=1,0.098,1,0.47 GT:PL:GQ 0/1:41,0,38:39 chr1 240643435 . A T 87 . DP=34;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,9,1,22;MQ=60;FQ=90;PV4=0.24,4.7e-05,1,0.082 GT:PL:GQ 0/1:117,0,145:99 chr1 240655330 . G A 43.1 . DP=6;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:76,18,0:33 chr1 240656824 . C A 169 . DP=17;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,10;MQ=60;FQ=-72 GT:PL:GQ 1/1:202,45,0:87 chr1 240939391 . C T 76 . DP=79;VDB=0.0298;AF1=0.5;AC1=1;DP4=29,16,25,8;MQ=60;FQ=79;PV4=0.33,7e-35,0.12,1 GT:PL:GQ 0/1:106,0,255:99 chr1 240975213 . T C 72 . DP=119;VDB=0.0298;AF1=0.5;AC1=1;DP4=56,6,49,4;MQ=60;FQ=75;PV4=0.75,7.9e-48,0.062,0.0027 GT:PL:GQ 0/1:102,0,255:99 chr1 240975435 . C T 56 . DP=43;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,22,0,20;MQ=60;FQ=59;PV4=1,2.7e-17,1,1 GT:PL:GQ 0/1:86,0,181:89 chr1 240977964 . G T 31.5 . DP=4;VDB=0.0143;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:64,12,0:21 chr1 241146322 . A G 222 . DP=34;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,16;MQ=60;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr1 241519098 . T A 222 . DP=35;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,11,23;MQ=59;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 241667233 . C T 176 . DP=22;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,21,0;MQ=60;FQ=-90 GT:PL:GQ 1/1:209,63,0:99 chr1 241667244 . G T 119 . DP=25;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,24,1;MQ=60;FQ=-102 GT:PL:GQ 1/1:152,75,0:99 chr1 241675119 . G C 96.3 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,5,0;MQ=55;FQ=-42 GT:PL:GQ 1/1:129,15,0:27 chr1 241676758 . C T 42.5 . DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:75,12,0:21 chr1 241712230 . G A 225 . DP=70;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,19,17,26;MQ=59;FQ=225;PV4=0.29,0.01,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr1 241729687 . AAGCTCCCTGGTCACAGC AAGC 46.5 . INDEL;DP=23;VDB=0.0066;AF1=0.5;AC1=1;DP4=15,0,8,0;MQ=51;FQ=49.5;PV4=1,0.088,0,1 GT:PL:GQ 0/1:84,0,255:87 chr1 241755348 . C T 144 . DP=101;VDB=0.0380;AF1=0.5;AC1=1;DP4=37,20,29,11;MQ=60;FQ=147;PV4=0.51,1.5e-39,1,1 GT:PL:GQ 0/1:174,0,255:99 chr1 241761349 . T C 37 . DP=19;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,9,1,6;MQ=60;FQ=40;PV4=1,1.1e-06,1,1 GT:PL:GQ 0/1:67,0,181:70 chr1 241767930 . G A 58 . DP=10;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:91,27,0:51 chr1 241838065 . T C 20 . DP=12;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,5,1,6;MQ=60;FQ=23;PV4=1,4.8e-06,1,0.4 GT:PL:GQ 0/1:50,0,108:53 chr1 241847018 . C T 165 . DP=16;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,15;MQ=58;FQ=-72 GT:PL:GQ 1/1:198,45,0:87 chr1 241886754 . T C 190 . DP=36;VDB=0.0398;AF1=0.5;AC1=1;DP4=1,17,2,13;MQ=60;FQ=178;PV4=0.58,1,1,0.4 GT:PL:GQ 0/1:220,0,205:99 chr1 241886764 . A G 33 . DP=28;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,14,0,11;MQ=60;FQ=36;PV4=1,7.7e-11,1,1 GT:PL:GQ 0/1:63,0,205:66 chr1 241907691 . A G 222 . DP=67;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,52,13;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr1 241907817 . T C 222 . DP=153;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,72,76;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 241913062 . CTTTTT CTTTTTT 76.5 . INDEL;DP=14;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-70.5 GT:PL:GQ 1/1:117,36,0:69 chr1 241933876 . A G 133 . DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,2;MQ=58;FQ=-69 GT:PL:GQ 1/1:166,42,0:81 chr1 241943271 . C G 155 . DP=11;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,0,8,1;MQ=60;FQ=15.1;PV4=1,0.18,1,0.16 GT:PL:GQ 0/1:185,0,42:45 chr1 241946766 . A C 149 . DP=37;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,16,0,18;MQ=57;FQ=152;PV4=0.49,0.023,1,1 GT:PL:GQ 0/1:179,0,241:99 chr1 241951107 . A C 94 . DP=51;VDB=0.0271;AF1=0.5;AC1=1;DP4=17,10,17,5;MQ=59;FQ=97;PV4=0.36,3.8e-22,1,0.5 GT:PL:GQ 0/1:124,0,255:99 chr1 241964559 . C T 40 . DP=90;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,38,50;MQ=59;FQ=-100 GT:PL:GQ 1/1:255,255,182:99 chr1 242016590 . C T 104 . DP=5;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:137,15,0:27 chr1 242035263 . A G 5.46 . DP=6;VDB=0.0070;AF1=0.4999;AC1=1;DP4=3,0,3,0;MQ=60;FQ=7.8;PV4=1,0.00018,1,1 GT:PL:GQ 0/1:34,0,82:34 chr1 242042301 . G A 162 . DP=135;VDB=0.0400;AF1=0.5;AC1=1;DP4=24,43,19,47;MQ=60;FQ=165;PV4=0.46,2.3e-51,1,0.35 GT:PL:GQ 0/1:192,0,255:99 chr1 242042545 . A G 103 . DP=44;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,8,13,7;MQ=59;FQ=106;PV4=1,1.8e-13,0.16,1 GT:PL:GQ 0/1:133,0,255:99 chr1 242042690 . A G 54 . DP=23;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,2,8;MQ=60;FQ=-57 GT:PL:GQ 1/1:87,30,0:57 chr1 242045275 . C T 222 . DP=33;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,16,16;MQ=60;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr1 242048674 . C T 113 . DP=27;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,4,8,8;MQ=60;FQ=116;PV4=0.7,6.6e-10,1,0.24 GT:PL:GQ 0/1:143,0,224:99 chr1 242053042 . A G 31 . DP=6;VDB=0.0041;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=60;FQ=27.8;PV4=1,0.0016,1,0.45 GT:PL:GQ 0/1:61,0,56:58 chr1 242383170 . TACA TACACA 217 . INDEL;DP=25;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,3,9,4;MQ=60;FQ=217;PV4=1,1,1,0.24 GT:PL:GQ 0/1:255,0,255:99 chr1 242383201 . T G 98 . DP=46;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,11,10,9;MQ=60;FQ=101;PV4=0.77,8.9e-22,1,1 GT:PL:GQ 0/1:128,0,255:99 chr1 242511556 . AACAAAGACAAAGA AACAAAGA 186 . INDEL;DP=61;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,27,5,19;MQ=47;FQ=189;PV4=0.44,1.1e-05,5.9e-12,0.13 GT:PL:GQ 0/1:224,0,255:99 chr1 243329049 . G A 117 . DP=234;VDB=0.0322;AF1=0.5;AC1=1;DP4=66,69,29,66;MQ=48;FQ=120;PV4=0.0065,9.9e-81,9.6e-09,1 GT:PL:GQ 0/1:147,0,255:99 chr1 243362331 . C T 66 . DP=25;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,25,0;MQ=28;FQ=-102 GT:PL:GQ 1/1:99,75,0:99 chr1 243419429 . T A 222 . DP=34;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,14,18;MQ=58;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr1 243481431 . A G 222 . DP=41;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,6,35;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 243507680 . CA CAA 119 . INDEL;DP=28;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,16,0,11;MQ=60;FQ=115;PV4=1,1,1,0.27 GT:PL:GQ 0/1:157,0,150:99 chr1 243589977 . T C 66 . DP=11;VDB=0.0027;AF1=0.5;AC1=1;DP4=0,7,0,4;MQ=60;FQ=69;PV4=1,1,1,1 GT:PL:GQ 0/1:96,0,135:99 chr1 244527857 . T C 138 . DP=18;VDB=0.0025;AF1=0.5;AC1=1;DP4=10,0,7,1;MQ=60;FQ=132;PV4=0.44,1,1,1 GT:PL:GQ 0/1:168,0,159:99 chr1 244528127 . T C 69 . DP=22;VDB=0.0025;AF1=0.5;AC1=1;DP4=1,8,1,12;MQ=60;FQ=72;PV4=1,6.6e-11,1,1 GT:PL:GQ 0/1:99,0,168:99 chr1 244601152 . C T 135 . DP=24;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,20;MQ=59;FQ=-99 GT:PL:GQ 1/1:168,72,0:99 chr1 244624887 . T C 27 . DP=21;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,10,0,8;MQ=60;FQ=30;PV4=0.49,1.3e-05,1,1 GT:PL:GQ 0/1:57,0,190:60 chr1 244715966 . G A 225 . DP=120;VDB=0.0345;AF1=0.5;AC1=1;DP4=25,38,16,37;MQ=60;FQ=225;PV4=0.33,0.43,0.45,1 GT:PL:GQ 0/1:255,0,255:99 chr1 244773784 . T C 183 . DP=8;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,6;MQ=60;FQ=-51 GT:PL:GQ 1/1:216,24,0:45 chr1 244773803 . T C 38.8 . DP=2;VDB=0.0171;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:70,6,0:10 chr1 244803205 . CTTTTTTTTTTTTTT CTTTTTTTTTTTT,CTTTTTTTTTTT,CTTTTTTTTTT 28.5 . INDEL;DP=62;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,42,6;MQ=58;FQ=-158 GT:PL:GQ 1/1:69,123,0,47,31,29,60,98,29,57:99 chr1 245027349 . C T 200 . DP=47;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,17,26;MQ=59;FQ=-156 GT:PL:GQ 1/1:233,129,0:99 chr1 245133539 . A G 60.1 . DP=8;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:93,21,0:39 chr1 245179188 . G T 91 . DP=17;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,16;MQ=57;FQ=-78 GT:PL:GQ 1/1:124,51,0:99 chr1 245179212 . C A 118 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:151,18,0:33 chr1 245180639 . ATTTTTTTTTTT ATTTTTTTTTT 26.5 . INDEL;DP=21;VDB=0.0298;AF1=1;AC1=2;DP4=1,0,9,8;MQ=60;FQ=-75.5;PV4=1,0.00065,1,0.37 GT:PL:GQ 1/1:67,41,0:64 chr1 245180677 . G T 62 . DP=18;VDB=0.0305;AF1=0.5;AC1=1;DP4=2,9,2,5;MQ=60;FQ=65;PV4=1,0.00011,1,0.48 GT:PL:GQ 0/1:92,0,197:95 chr1 245180744 . G T 77 . DP=9;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:110,27,0:51 chr1 245180750 . A G 142 . DP=8;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:175,24,0:45 chr1 245222634 . C G 88 . DP=15;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:121,39,0:75 chr1 245222839 . G T 222 . DP=52;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,41;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 245249945 . C T 7.8 . DP=3;VDB=0.0171;AF1=0.5003;AC1=1;DP4=1,0,2,0;MQ=60;FQ=3.27;PV4=1,0.18,1,1 GT:PL:GQ 0/1:37,0,28:32 chr1 245318688 . C T 222 . DP=63;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,36,23;MQ=59;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 245703990 . G T 96 . DP=101;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,26,21,27;MQ=60;FQ=99;PV4=0.69,6.3e-49,0.15,0.47 GT:PL:GQ 0/1:126,0,255:99 chr1 245775287 . G A 133 . DP=38;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,12,4,12;MQ=59;FQ=136;PV4=1,4.2e-08,0.16,1 GT:PL:GQ 0/1:163,0,255:99 chr1 245848996 . G A 195 . DP=143;VDB=0.0398;AF1=0.5;AC1=1;DP4=29,37,28,43;MQ=60;FQ=198;PV4=0.61,1.3e-24,1,1 GT:PL:GQ 0/1:225,0,255:99 chr1 245851304 . A G 222 . DP=56;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,38;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 245851609 . C G 50 . DP=59;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,26,5,13;MQ=60;FQ=53;PV4=0.57,3.1e-14,1,1 GT:PL:GQ 0/1:80,0,255:83 chr1 245861571 . C T 222 . DP=40;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,30;MQ=60;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 245912840 . C T 143 . DP=30;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,2,14,4;MQ=59;FQ=146;PV4=1,1.6e-08,0.23,1 GT:PL:GQ 0/1:173,0,183:99 chr1 246021851 . G A 89 . DP=40;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,8,10,4;MQ=60;FQ=92;PV4=1,1.3e-11,1,0.2 GT:PL:GQ 0/1:119,0,255:99 chr1 246021941 . T C 222 . DP=48;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,18,29;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 246022071 . C T 97.3 . DP=5;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:130,15,0:27 chr1 246027024 . A G 137 . DP=26;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,24,2;MQ=53;FQ=-105 GT:PL:GQ 1/1:170,78,0:99 chr1 246027029 . A T 118 . DP=36;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,30,3;MQ=53;FQ=-126 GT:PL:GQ 1/1:151,99,0:99 chr1 246027034 . G C 168 . DP=43;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,38,4;MQ=54;FQ=-153 GT:PL:GQ 1/1:201,126,0:99 chr1 246091457 . T C 222 . DP=32;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,2,28;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 246091515 . C T 71.5 . DP=6;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:104,12,0:21 chr1 246093464 . AG A 6.55 . INDEL;DP=70;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,5,0,5;MQ=59;FQ=9.05;PV4=0.0047,0.31,1,1 GT:PL:GQ 0/1:43,0,250:44 chr1 246110573 . A G 222 . DP=94;VDB=0.0345;AF1=1;AC1=2;DP4=1,0,77,16;MQ=60;FQ=-282;PV4=1,1,1,0.2 GT:PL:GQ 1/1:255,255,0:99 chr1 246490438 . T C 72 . DP=59;VDB=0.0298;AF1=0.5;AC1=1;DP4=27,5,25,2;MQ=58;FQ=75;PV4=0.44,7.2e-25,0.0022,1 GT:PL:GQ 0/1:102,0,255:99 chr1 246490442 . A G 64 . DP=64;VDB=0.0322;AF1=0.5;AC1=1;DP4=28,8,25,2;MQ=58;FQ=67;PV4=0.17,4.8e-29,0.0012,1 GT:PL:GQ 0/1:94,0,255:97 chr1 246490452 . G A 50 . DP=77;VDB=0.0399;AF1=0.5;AC1=1;DP4=32,9,31,4;MQ=58;FQ=53;PV4=0.36,3e-32,0.0026,0.42 GT:PL:GQ 0/1:80,0,255:83 chr1 246498866 . A C 9.52 . DP=13;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,7,0,5;MQ=60;FQ=12.3;PV4=1,5e-06,1,0.48 GT:PL:GQ 0/1:39,0,174:41 chr1 246670333 . A G 160 . DP=20;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,15,4;MQ=59;FQ=-84 GT:PL:GQ 1/1:193,57,0:99 chr1 246670481 . C G 222 . DP=70;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,21,46;MQ=57;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr1 246704563 . C T 79 . DP=10;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,5,0,5;MQ=60;FQ=81.7;PV4=1,0.0012,1,0.12 GT:PL:GQ 0/1:109,0,121:99 chr1 246707858 . A G 29 . DP=16;VDB=0.0384;AF1=0.5;AC1=1;DP4=6,1,6,1;MQ=60;FQ=32;PV4=1,2.2e-06,1,1 GT:PL:GQ 0/1:59,0,150:62 chr1 246711816 . GAAAAA GAAAA 19.5 . INDEL;DP=24;VDB=0.0164;AF1=0.5;AC1=1;DP4=11,2,11,0;MQ=59;FQ=22.5;PV4=0.48,0.0012,0.14,1 GT:PL:GQ 0/1:57,0,86:60 chr1 246712033 . A G 47 . DP=11;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:80,33,0:63 chr1 246714587 . G A 41 . DP=20;VDB=0.0373;AF1=0.5;AC1=1;DP4=3,10,2,5;MQ=59;FQ=44;PV4=1,1.6e-10,0.09,0.11 GT:PL:GQ 0/1:71,0,250:74 chr1 246714636 . T A 3.54 . DP=14;VDB=0.0099;AF1=0.4998;AC1=1;DP4=1,8,0,5;MQ=58;FQ=5.47;PV4=1,2.8e-09,0.095,1 GT:PL:GQ 0/1:31,0,176:30 chr1 246720798 . G A 172 . DP=34;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,21;MQ=59;FQ=-126 GT:PL:GQ 1/1:205,99,0:99 chr1 246727558 . G T 67 . DP=8;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:100,24,0:45 chr1 246755124 . T C 213 . DP=26;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,12;MQ=59;FQ=-99 GT:PL:GQ 1/1:246,72,0:99 chr1 246903654 . G C 27 . DP=18;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,11,1,6;MQ=60;FQ=30;PV4=0.39,2.5e-06,1,1 GT:PL:GQ 0/1:57,0,160:60 chr1 246929483 . A G 184 . DP=21;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,6,2,9;MQ=59;FQ=137;PV4=1,1,1,0.47 GT:PL:GQ 0/1:214,0,164:99 chr1 246939610 . ATATTTATTT ATATTTATTTATTT 217 . INDEL;DP=89;VDB=0.0380;AF1=0.5;AC1=1;DP4=36,16,16,13;MQ=59;FQ=217;PV4=0.23,1,0.00085,0.098 GT:PL:GQ 0/1:255,0,255:99 chr1 246939856 . G A 186 . DP=61;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,10,18,18;MQ=60;FQ=189;PV4=0.6,2.8e-23,1,1 GT:PL:GQ 0/1:216,0,255:99 chr1 246939943 . T C 111 . DP=57;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,19,11,16;MQ=59;FQ=114;PV4=0.58,1.4e-27,1,0.5 GT:PL:GQ 0/1:141,0,255:99 chr1 246940179 . G A 225 . DP=50;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,9,17,9;MQ=59;FQ=225;PV4=0.77,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 246940182 . C A 141 . DP=50;VDB=0.0244;AF1=0.5;AC1=1;DP4=15,8,17,9;MQ=59;FQ=144;PV4=1,5.7e-13,1,1 GT:PL:GQ 0/1:171,0,255:99 chr1 246943547 . A C 85 . DP=12;VDB=0.0004;AF1=0.5;AC1=1;DP4=6,1,4,1;MQ=58;FQ=88;PV4=1,1,0.13,0.0025 GT:PL:GQ 0/1:115,0,146:99 chr1 247006160 . G T 203 . DP=16;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,1,15;MQ=59;FQ=-75 GT:PL:GQ 1/1:236,48,0:93 chr1 247025531 . C T 3.54 . DP=7;VDB=0.0143;AF1=0.4998;AC1=1;DP4=0,3,0,3;MQ=57;FQ=5.47;PV4=1,0.00053,0.19,0.23 GT:PL:GQ 0/1:31,0,75:30 chr1 247031193 . A C 5.48 . DP=6;VDB=0.0140;AF1=0.5024;AC1=1;DP4=1,0,0,3;MQ=60;FQ=-7.92;PV4=0.25,0.041,1,1 GT:PL:GQ 0/1:34,0,20:25 chr1 247048834 . T C 35.5 . DP=4;VDB=0.0095;AF1=1;AC1=2;DP4=0,0,4,0;MQ=29;FQ=-39 GT:PL:GQ 1/1:68,12,0:21 chr1 247054344 . T C 113 . DP=36;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,4,13,4;MQ=56;FQ=116;PV4=1,8.5e-10,1,1 GT:PL:GQ 0/1:143,0,240:99 chr1 247054530 . T C 5.29 . DP=2;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:35,6,0:6 chr1 247109014 . G C 45.1 . DP=6;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:78,18,0:33 chr1 247109168 . G A 154 . DP=101;VDB=0.0345;AF1=0.5;AC1=1;DP4=38,16,34,13;MQ=59;FQ=157;PV4=1,4.8e-34,0.43,1 GT:PL:GQ 0/1:184,0,255:99 chr1 247109267 . A C 222 . DP=85;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,13,66;MQ=58;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr1 247109291 . CG C 214 . INDEL;DP=54;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,48;MQ=57;FQ=-195 GT:PL:GQ 1/1:255,160,0:99 chr1 247109296 . A G 131 . DP=45;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,2,40;MQ=59;FQ=-153 GT:PL:GQ 1/1:164,126,0:99 chr1 247151487 . C T 225 . DP=166;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,64,20,55;MQ=60;FQ=225;PV4=0.86,0.033,0.06,0.13 GT:PL:GQ 0/1:255,0,255:99 chr1 247159480 . T G 51 . DP=6;VDB=0.0001;AF1=0.5004;AC1=1;DP4=0,1,0,3;MQ=60;FQ=3.55;PV4=1,0.2,1,0.037 GT:PL:GQ 0/1:81,0,28:31 chr1 247162628 . C T 148 . DP=192;VDB=0.0298;AF1=0.5;AC1=1;DP4=35,46,39,66;MQ=60;FQ=151;PV4=0.45,3.1e-65,0.11,1 GT:PL:GQ 0/1:178,0,255:99 chr1 247162658 . C T 222 . DP=187;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,52,131;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 247201591 . T C 84 . DP=120;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,39,21,35;MQ=60;FQ=87;PV4=0.7,1.4e-53,0.49,1 GT:PL:GQ 0/1:114,0,255:99 chr1 247202032 . G T 26.5 . DP=4;VDB=0.0017;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:59,12,0:21 chr1 247241795 . C A 166 . DP=10;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:199,30,0:57 chr1 247241850 . G C 101 . DP=36;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,6,16,4;MQ=59;FQ=104;PV4=0.27,8.7e-16,1,1 GT:PL:GQ 0/1:131,0,235:99 chr1 247267274 . C A 68 . DP=14;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,3,5,0;MQ=60;FQ=71;PV4=0.26,1,1,0.18 GT:PL:GQ 0/1:98,0,185:99 chr1 247287256 . T A 20 . DP=79;VDB=0.0053;AF1=0.5;AC1=1;DP4=14,40,2,20;MQ=49;FQ=23;PV4=0.13,3.2e-24,1,1 GT:PL:GQ 0/1:50,0,255:53 chr1 247287260 . A G 124 . DP=73;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,40,7,17;MQ=50;FQ=127;PV4=0.23,1.5e-17,0.26,1 GT:PL:GQ 0/1:154,0,255:99 chr1 247287269 . T C 182 . DP=65;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,17,8,35;MQ=50;FQ=145;PV4=0.71,5e-17,1,1 GT:PL:GQ 0/1:212,0,172:99 chr1 247322298 . G T 53 . DP=28;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,8,3,7;MQ=60;FQ=56;PV4=0.25,1e-11,1,1 GT:PL:GQ 0/1:83,0,255:86 chr1 247323260 . C A 59 . DP=15;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,7,0,7;MQ=60;FQ=62;PV4=1,5.8e-06,1,0.29 GT:PL:GQ 0/1:89,0,140:92 chr1 247365430 . A G 222 . DP=62;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,21,38;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 247419509 . T C 225 . DP=130;VDB=0.0365;AF1=0.5;AC1=1;DP4=38,16,56,16;MQ=60;FQ=225;PV4=0.41,0.029,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 247419664 . C T 144 . DP=189;VDB=0.0365;AF1=0.5;AC1=1;DP4=39,60,29,60;MQ=59;FQ=147;PV4=0.36,1.4e-82,1,0.3 GT:PL:GQ 0/1:174,0,255:99 chr1 247485932 . A G 159 . DP=13;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:192,30,0:57 chr1 247486213 . G A 130 . DP=13;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,3,1,8;MQ=58;FQ=66;PV4=1,0.19,0.26,0.055 GT:PL:GQ 0/1:160,0,93:96 chr1 247486421 . G C 74 . DP=10;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:107,30,0:57 chr1 247587477 . G A 222 . DP=83;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,49,31;MQ=59;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr1 247587531 . A G 209 . DP=93;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,52,33;MQ=59;FQ=-282 GT:PL:GQ 1/1:242,255,0:99 chr1 247597365 . G A 123 . DP=18;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,16,1;MQ=49;FQ=-78 GT:PL:GQ 1/1:156,51,0:99 chr1 247597656 . TGGGG TGGG 81.5 . INDEL;DP=23;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,20;MQ=60;FQ=-94.5 GT:PL:GQ 1/1:122,60,0:99 chr1 247599232 . G A 23 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:55,9,0:15 chr1 247614617 . C T 138 . DP=44;VDB=0.0359;AF1=0.5;AC1=1;DP4=12,13,8,10;MQ=59;FQ=141;PV4=1,5.4e-09,1,0.2 GT:PL:GQ 0/1:168,0,255:99 chr1 247614693 . C T 222 . DP=49;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,24,23;MQ=59;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 247614896 . A C 225 . DP=64;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,18,17,15;MQ=60;FQ=225;PV4=0.45,0.23,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 247615252 . G A 177 . DP=85;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,24,19,22;MQ=59;FQ=180;PV4=1,3.3e-26,0.018,1 GT:PL:GQ 0/1:207,0,255:99 chr1 247615261 . GAA GA 217 . INDEL;DP=86;VDB=0.0399;AF1=0.5;AC1=1;DP4=20,28,19,18;MQ=59;FQ=217;PV4=0.39,4.7e-21,0.023,1 GT:PL:GQ 0/1:255,0,255:99 chr1 247654993 . T C 123 . DP=105;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,34,22,29;MQ=60;FQ=126;PV4=0.56,8.7e-38,0.48,0.46 GT:PL:GQ 0/1:153,0,255:99 chr1 247655275 . T C 107 . DP=65;VDB=0.0164;AF1=0.5;AC1=1;DP4=9,26,3,26;MQ=60;FQ=110;PV4=0.2,7.7e-27,1,1 GT:PL:GQ 0/1:137,0,255:99 chr1 247690320 . C T 118 . DP=63;VDB=0.0400;AF1=0.5;AC1=1;DP4=25,15,16,7;MQ=60;FQ=121;PV4=0.78,8.9e-19,0.095,0.35 GT:PL:GQ 0/1:148,0,255:99 chr1 247695427 . C G 71 . DP=77;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,28,16,13;MQ=60;FQ=74;PV4=0.24,4.2e-36,0.1,1 GT:PL:GQ 0/1:101,0,255:99 chr1 247695612 . G A 205 . DP=101;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,50,38;MQ=59;FQ=-282 GT:PL:GQ 1/1:238,255,0:99 chr1 247695756 . T C 222 . DP=59;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,45;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 247702118 . C T 65 . DP=43;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,5,17,3;MQ=59;FQ=68;PV4=0.69,3e-23,1,1 GT:PL:GQ 0/1:95,0,255:98 chr1 247726822 . CTTTTTTT CTTT 217 . INDEL;DP=72;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,13,23,7;MQ=59;FQ=217;PV4=0.42,4.8e-23,0.055,1 GT:PL:GQ 0/1:255,0,255:99 chr1 247751731 . C G 134 . DP=88;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,29,17,14;MQ=60;FQ=137;PV4=0.65,3e-27,1,0.45 GT:PL:GQ 0/1:164,0,255:99 chr1 247752019 . G C 222 . DP=71;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,36,30;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr1 247752367 . A G 134 . DP=75;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,12,24,16;MQ=60;FQ=137;PV4=0.81,1.2e-30,0.18,0.47 GT:PL:GQ 0/1:164,0,255:99 chr1 247769062 . A G 145 . DP=274;VDB=0.0380;AF1=0.5;AC1=1;DP4=90,71,58,48;MQ=60;FQ=148;PV4=0.9,5.2e-63,1,0.43 GT:PL:GQ 0/1:175,0,255:99 chr1 247769252 . G A 181 . DP=147;VDB=0.0392;AF1=0.5;AC1=1;DP4=30,40,33,44;MQ=60;FQ=184;PV4=1,8.1e-54,0.088,0.059 GT:PL:GQ 0/1:211,0,255:99 chr1 247769592 . C T 225 . DP=140;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,50,21,39;MQ=60;FQ=225;PV4=1,1,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 247769752 . A G 225 . DP=41;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,14,6,18;MQ=60;FQ=177;PV4=0.44,0.39,1,1 GT:PL:GQ 0/1:255,0,204:99 chr1 247835352 . C T 59.1 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:92,18,0:33 chr1 247835674 . G A 150 . DP=89;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,24,21,20;MQ=59;FQ=153;PV4=0.67,1.9e-37,0.071,1 GT:PL:GQ 0/1:180,0,255:99 chr1 247835908 . T A 171 . DP=59;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,15,11,23;MQ=60;FQ=174;PV4=0.59,7.2e-19,0.2,1 GT:PL:GQ 0/1:201,0,255:99 chr1 247835950 . T C 225 . DP=57;VDB=0.0373;AF1=0.5;AC1=1;DP4=13,18,11,12;MQ=59;FQ=225;PV4=0.78,1,0.049,0.41 GT:PL:GQ 0/1:255,0,255:99 chr1 247836008 . G A 122 . DP=48;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,13,12,11;MQ=57;FQ=125;PV4=1,9.7e-15,1,1 GT:PL:GQ 0/1:152,0,255:99 chr1 247836207 . T A 109 . DP=76;VDB=0.0398;AF1=0.5;AC1=1;DP4=23,18,17,14;MQ=60;FQ=112;PV4=1,1.1e-23,1,1 GT:PL:GQ 0/1:139,0,255:99 chr1 247875608 . C G 223 . DP=47;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,18,7,12;MQ=60;FQ=224;PV4=0.75,0.012,1,0.3 GT:PL:GQ 0/1:253,0,255:99 chr1 247921100 . T G 222 . DP=66;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,33,31;MQ=59;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr1 247921352 . C T 222 . DP=56;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,29,26;MQ=59;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 247921717 . C A 80 . DP=19;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,2,16;MQ=60;FQ=-81 GT:PL:GQ 1/1:113,54,0:99 chr1 247978087 . G A 99 . DP=27;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,21,4;MQ=60;FQ=-102 GT:PL:GQ 1/1:132,75,0:99 chr1 247978135 . C A 73 . DP=53;VDB=0.0398;AF1=0.5;AC1=1;DP4=24,6,16,4;MQ=60;FQ=76;PV4=1,8e-16,1,1 GT:PL:GQ 0/1:103,0,255:99 chr1 247978319 . A G 183 . DP=65;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,34,29;MQ=60;FQ=-217 GT:PL:GQ 1/1:216,190,0:99 chr1 247978541 . AAGGAG AAG 214 . INDEL;DP=73;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,31,35;MQ=57;FQ=-234 GT:PL:GQ 1/1:255,199,0:99 chr1 247978996 . A G 189 . DP=38;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,31;MQ=60;FQ=-138 GT:PL:GQ 1/1:222,111,0:99 chr1 248004614 . G A 222 . DP=79;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,41,35;MQ=60;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr1 248004687 . C G 222 . DP=122;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,79,41;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248004775 . C T 222 . DP=122;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,35,79;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248004848 . G C 222 . DP=79;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,48;MQ=59;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr1 248004877 . C T 222 . DP=79;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,34,38;MQ=58;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr1 248004884 . T C 222 . DP=81;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,39,41;MQ=58;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr1 248005213 . G C 222 . DP=35;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,25;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 248020556 . G C 58 . DP=15;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,0,6,1;MQ=60;FQ=60.7;PV4=1,0.0082,1,1 GT:PL:GQ 0/1:88,0,100:91 chr1 248023966 . C T 222 . DP=46;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,17,29;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 248024073 . A C 79 . DP=12;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:112,36,0:69 chr1 248039713 . A G 172 . DP=86;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,21,19,30;MQ=60;FQ=175;PV4=0.82,2.1e-31,1,1 GT:PL:GQ 0/1:202,0,255:99 chr1 248058797 . T G 169 . DP=19;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,16,0;MQ=60;FQ=-75 GT:PL:GQ 1/1:202,48,0:93 chr1 248058845 . A C 222 . DP=50;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,41,7;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 248058879 . A T 222 . DP=94;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,71,20;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248059423 . C T 225 . DP=64;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,16,18,17;MQ=60;FQ=225;PV4=0.62,0.15,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 248059456 . G A 225 . DP=66;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,12,19,19;MQ=59;FQ=225;PV4=0.8,0.06,1,0.45 GT:PL:GQ 0/1:255,0,255:99 chr1 248059476 . A C 194 . DP=71;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,12,22,17;MQ=59;FQ=197;PV4=1,7.4e-20,1,0.44 GT:PL:GQ 0/1:224,0,255:99 chr1 248059703 . T A 136 . DP=65;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,20,9,13;MQ=59;FQ=139;PV4=0.79,8.9e-15,0.35,0.28 GT:PL:GQ 0/1:166,0,255:99 chr1 248059712 . T C 225 . DP=58;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,20,8,12;MQ=59;FQ=225;PV4=0.79,0.19,0.34,0.054 GT:PL:GQ 0/1:255,0,255:99 chr1 248059856 . T C 4.13 . DP=13;VDB=0.0236;AF1=0.4998;AC1=1;DP4=0,9,1,3;MQ=60;FQ=6.2;PV4=0.31,1.5e-09,1,1 GT:PL:GQ 0/1:32,0,161:31 chr1 248084434 . G A 185 . DP=44;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,7,35;MQ=39;FQ=-153 GT:PL:GQ 1/1:218,126,0:99 chr1 248084464 . T C 124 . DP=21;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,2,18;MQ=27;FQ=-87 GT:PL:GQ 1/1:157,60,0:99 chr1 248085108 . C T 102 . DP=8;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,7,0;MQ=33;FQ=-48 GT:PL:GQ 1/1:135,21,0:39 chr1 248085341 . T A 80 . DP=9;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,6;MQ=60;FQ=-51 GT:PL:GQ 1/1:113,24,0:45 chr1 248112627 . T C 225 . DP=122;VDB=0.0400;AF1=0.5;AC1=1;DP4=20,57,17,25;MQ=54;FQ=225;PV4=0.15,0.025,0.18,0.42 GT:PL:GQ 0/1:255,0,255:99 chr1 248112745 . G T 218 . DP=79;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,52,24;MQ=41;FQ=-256 GT:PL:GQ 1/1:251,229,0:99 chr1 248112762 . T C 65 . DP=73;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,12;MQ=47;FQ=-63 GT:PL:GQ 1/1:98,36,0:69 chr1 248112763 . G A 46 . DP=73;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,10;MQ=47;FQ=-57 GT:PL:GQ 1/1:79,30,0:57 chr1 248112771 . C T 152 . DP=84;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,59,23;MQ=40;FQ=-274 GT:PL:GQ 1/1:185,247,0:99 chr1 248112809 . A G 222 . DP=109;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,59,42;MQ=46;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248112836 . A G 222 . DP=99;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,43,53;MQ=48;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248112915 . A G 225 . DP=63;VDB=0.0099;AF1=0.5;AC1=1;DP4=10,24,7,19;MQ=49;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 248128929 . G A 149 . DP=125;VDB=0.0398;AF1=0.5;AC1=1;DP4=34,41,15,31;MQ=60;FQ=152;PV4=0.19,2.7e-24,1,1 GT:PL:GQ 0/1:179,0,255:99 chr1 248129240 . G A 141 . DP=63;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,16,14,16;MQ=60;FQ=144;PV4=0.8,2.5e-21,1,1 GT:PL:GQ 0/1:171,0,255:99 chr1 248343543 . C T 151 . DP=32;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,21,8;MQ=53;FQ=-114 GT:PL:GQ 1/1:184,87,0:99 chr1 248366702 . G A 222 . DP=200;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,116,78;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248367415 . C T 171 . DP=15;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,15;MQ=60;FQ=-72 GT:PL:GQ 1/1:204,45,0:87 chr1 248402758 . C T 147 . DP=107;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,44,50;MQ=60;FQ=-282 GT:PL:GQ 1/1:180,255,0:99 chr1 248457979 . C A 222 . DP=57;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,19,37;MQ=59;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 248458676 . T C 97 . DP=11;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,11,0;MQ=28;FQ=-60 GT:PL:GQ 1/1:130,33,0:63 chr1 248458689 . A G 61 . DP=15;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,14,0;MQ=35;FQ=-69 GT:PL:GQ 1/1:94,42,0:81 chr1 248458717 . C G 155 . DP=25;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,21,3;MQ=45;FQ=-99 GT:PL:GQ 1/1:188,72,0:99 chr1 248486895 . G T 167 . DP=52;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,43,7;MQ=60;FQ=-178 GT:PL:GQ 1/1:200,151,0:99 chr1 248486913 . A G 222 . DP=64;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,51,12;MQ=59;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr1 248487638 . A G 158 . DP=7;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,3,4;MQ=60;FQ=-48 GT:PL:GQ 1/1:191,21,0:39 chr1 248487768 . A G 151 . DP=79;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,52,22;MQ=60;FQ=-250 GT:PL:GQ 1/1:184,223,0:99 chr1 248512064 . T G 222 . DP=125;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,92,26;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248512094 . C T 222 . DP=146;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,94,49;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248512637 . C T 222 . DP=73;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,27,41;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr1 248512749 . G A 208 . DP=52;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,32,17;MQ=60;FQ=-175 GT:PL:GQ 1/1:241,148,0:99 chr1 248512767 . G T 222 . DP=56;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,36,19;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 248513023 . G A 108 . DP=15;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:141,45,0:87 chr1 248525638 . CA C 214 . INDEL;DP=128;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,60,65;MQ=59;FQ=-290 GT:PL:GQ 1/1:255,255,0:99 chr1 248550976 . T G 222 . DP=114;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,54,56;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248569282 . A G 116 . DP=20;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,18,1;MQ=60;FQ=-84 GT:PL:GQ 1/1:149,57,0:99 chr1 248569369 . A G 222 . DP=72;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,53,17;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr1 248570440 . G A 21.3 . DP=5;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:54,15,0:26 chr1 248604614 . A T 42 . DP=23;VDB=0.0019;AF1=0.5;AC1=1;DP4=9,3,11,0;MQ=31;FQ=45;PV4=0.22,7.1e-08,0.29,0.32 GT:PL:GQ 0/1:72,0,140:75 chr1 248604765 . T A 169 . DP=32;VDB=0.0365;AF1=0.5001;AC1=1;DP4=5,4,10,13;MQ=24;FQ=7.8;PV4=0.7,0.26,1,1 GT:PL:GQ 0/1:199,0,34:37 chr1 248605436 . C G 222 . DP=23;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,5,18;MQ=28;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr1 248605442 . G T 140 . DP=23;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,5,17;MQ=28;FQ=-93 GT:PL:GQ 1/1:173,66,0:99 chr1 248651927 . A G 63 . DP=35;VDB=0.0081;AF1=1;AC1=2;DP4=1,0,28,4;MQ=18;FQ=-109;PV4=1,0.33,1,1 GT:PL:GQ 1/1:96,82,0:99 chr1 248685253 . T C 222 . DP=88;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,46,37;MQ=60;FQ=-277 GT:PL:GQ 1/1:255,250,0:99 chr1 248722722 . T C 61 . DP=32;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,32,0;MQ=19;FQ=-123 GT:PL:GQ 1/1:94,96,0:99 chr1 248737259 . C G 53 . DP=25;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,0;MQ=29;FQ=-99 GT:PL:GQ 1/1:86,72,0:99 chr1 248738133 . A G 49 . DP=39;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,24,0,14;MQ=46;FQ=52;PV4=1,3.3e-13,0.39,1 GT:PL:GQ 0/1:79,0,201:82 chr1 248789454 . G C 200 . DP=56;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,40,14;MQ=60;FQ=-190 GT:PL:GQ 1/1:233,163,0:99 chr1 248789504 . T C 222 . DP=91;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,58,29;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248789753 . G C 146 . DP=62;VDB=0.0398;AF1=0.5;AC1=1;DP4=16,10,20,13;MQ=59;FQ=149;PV4=1,1.6e-20,0.35,1 GT:PL:GQ 0/1:176,0,255:99 chr1 248790075 . A G 222 . DP=112;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,42,67;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248790167 . A G 170 . DP=82;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,24,14,30;MQ=60;FQ=173;PV4=0.65,1.4e-21,0.18,1 GT:PL:GQ 0/1:200,0,255:99 chr1 248790199 . T C 122 . DP=75;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,21,16,20;MQ=60;FQ=125;PV4=1,6.4e-22,0.16,1 GT:PL:GQ 0/1:152,0,255:99 chr1 248790425 . G A 225 . DP=22;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,7,5,9;MQ=60;FQ=132;PV4=0.35,0.21,1,0.28 GT:PL:GQ 0/1:255,0,159:99 chr1 248801778 . A T 68 . DP=14;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,14,0;MQ=21;FQ=-69 GT:PL:GQ 1/1:101,42,0:81 chr1 248801944 . TCAGCACGCAGCA TCAGCA 96.5 . INDEL;DP=20;VDB=0.0325;AF1=1;AC1=2;DP4=0,0,3,8;MQ=20;FQ=-67.5 GT:PL:GQ 1/1:137,33,0:63 chr1 248813135 . G A 13.2 . DP=5;VDB=0.0003;AF1=0.5004;AC1=1;DP4=1,0,3,0;MQ=60;FQ=3.47;PV4=1,0.00066,1,0.021 GT:PL:GQ 0/1:43,0,28:31 chr1 248813280 . C T 102 . DP=65;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,15,18,12;MQ=57;FQ=105;PV4=0.8,2.3e-31,1,1 GT:PL:GQ 0/1:132,0,255:99 chr1 248813542 . G A 96 . DP=13;VDB=0.0380;AF1=0.504;AC1=1;DP4=0,2,8,2;MQ=38;FQ=-9.5;PV4=0.091,0.005,1,1 GT:PL:GQ 0/1:126,0,18:21 chr1 248813650 . CAGAAGAAG CAGAAG 95.6 . INDEL;DP=17;VDB=0.0365;AF1=0.5163;AC1=1;DP4=4,0,4,8;MQ=21;FQ=-22.5;PV4=0.077,5e-06,1,0.45 GT:PL:GQ 0/1:133,0,12:15 chr1 248813723 . C T 128 . DP=26;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,2,11,5;MQ=28;FQ=40;PV4=0.67,0.0073,1,1 GT:PL:GQ 0/1:158,0,67:70 chr1 248813901 . A T 166 . DP=72;VDB=0.0359;AF1=0.5;AC1=1;DP4=24,22,6,18;MQ=28;FQ=169;PV4=0.042,0.25,1,1 GT:PL:GQ 0/1:196,0,209:99 chr1 248814052 . T A 183 . DP=106;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,19,33,23;MQ=40;FQ=186;PV4=1,2.6e-33,1,1 GT:PL:GQ 0/1:213,0,255:99 chr1 248814080 . A C 193 . DP=127;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,47,74;MQ=42;FQ=-282 GT:PL:GQ 1/1:226,255,0:99 chr1 248814126 . G A 225 . DP=117;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,41,17,45;MQ=47;FQ=225;PV4=0.67,0.34,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 248845097 . C T 222 . DP=113;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,50,60;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248845411 . G A 222 . DP=82;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,48;MQ=60;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr1 248845458 . C T 222 . DP=76;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,31,43;MQ=60;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr1 248845471 . T C 222 . DP=68;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,25,37;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 248845499 . A G 222 . DP=59;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,22,33;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 249107414 . T C 7 . DP=3;VDB=0.0090;AF1=0.5024;AC1=1;DP4=1,0,0,2;MQ=60;FQ=-7.87;PV4=0.33,0.26,1,1 GT:PL:GQ 0/1:36,0,20:25 chr1 249108640 . C T 71 . DP=16;VDB=0.0019;AF1=0.5;AC1=1;DP4=5,2,7,2;MQ=60;FQ=74;PV4=1,3e-06,1,0.17 GT:PL:GQ 0/1:101,0,159:99 chr1 249109034 . A G 4.13 . DP=3;VDB=0.0167;AF1=0.5006;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-4.62;PV4=1,0.024,1,1 GT:PL:GQ 0/1:32,0,25:29 chr1 249145072 . C CA 125 . INDEL;DP=10;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,2,4,2;MQ=60;FQ=71.5;PV4=1,1,1,0.3 GT:PL:GQ 0/1:163,0,106:99 chr1 249148399 . C T 14.2 . DP=4;VDB=0.0070;AF1=0.5001;AC1=1;DP4=0,1,0,2;MQ=60;FQ=6;PV4=1,0.065,1,0.33 GT:PL:GQ 0/1:44,0,32:35 chr2 41647 . A G 78 . DP=33;VDB=0.0384;AF1=0.5;AC1=1;DP4=3,11,5,13;MQ=59;FQ=81;PV4=1,1.6e-15,1,1 GT:PL:GQ 0/1:108,0,221:99 chr2 45622 . G T 130 . DP=72;VDB=0.0298;AF1=0.5;AC1=1;DP4=19,19,11,19;MQ=59;FQ=133;PV4=0.33,4.5e-22,1,1 GT:PL:GQ 0/1:160,0,255:99 chr2 45895 . A G 134 . DP=14;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,6;MQ=58;FQ=-69 GT:PL:GQ 1/1:167,42,0:81 chr2 224919 . A G 40 . DP=13;VDB=0.0219;AF1=0.5;AC1=1;DP4=6,4,1,2;MQ=60;FQ=43;PV4=0.56,1,1,1 GT:PL:GQ 0/1:70,0,216:73 chr2 230912 . A C 67 . DP=22;VDB=0.0081;AF1=0.5;AC1=1;DP4=11,0,9,2;MQ=60;FQ=70;PV4=0.48,2.9e-08,1,1 GT:PL:GQ 0/1:97,0,153:99 chr2 242732 . taacaacaacaacaacaaca tAACaacaacaacaacaacaaca 209 . INDEL;DP=18;VDB=0.0216;AF1=0.5;AC1=1;DP4=7,2,6,1;MQ=59;FQ=212;PV4=1,1,0.14,1 GT:PL:GQ 0/1:247,0,255:99 chr2 242793 . G C 222 . DP=35;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,7,10,5;MQ=59;FQ=223;PV4=1,0.063,0.13,0.19 GT:PL:GQ 0/1:252,0,255:99 chr2 262553 . T C 70 . DP=23;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,1,10,2;MQ=60;FQ=73;PV4=1,3.5e-10,1,0.13 GT:PL:GQ 0/1:100,0,187:99 chr2 264895 . G C 88 . DP=14;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,13,0;MQ=58;FQ=-66 GT:PL:GQ 1/1:121,39,0:75 chr2 272203 . C T 225 . DP=56;VDB=0.0393;AF1=0.5;AC1=1;DP4=13,13,7,22;MQ=60;FQ=225;PV4=0.056,0.29,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr2 272840 . G A 17.1 . DP=7;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=19.4;PV4=1,0.00022,1,0.32 GT:PL:GQ 0/1:47,0,55:49 chr2 272926 . A G 225 . DP=50;VDB=0.0399;AF1=0.5;AC1=1;DP4=24,8,12,6;MQ=60;FQ=225;PV4=0.53,1,1,0.47 GT:PL:GQ 0/1:255,0,255:99 chr2 273070 . A G 33 . DP=33;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,18,2,8;MQ=60;FQ=36;PV4=1,1.7e-10,1,1 GT:PL:GQ 0/1:63,0,255:66 chr2 277003 . A G 40 . DP=9;VDB=0.0053;AF1=0.5;AC1=1;DP4=2,0,6,0;MQ=60;FQ=19.1;PV4=1,0.00027,1,1 GT:PL:GQ 0/1:70,0,46:49 chr2 672976 . A G 225 . DP=26;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,7,3,13;MQ=60;FQ=169;PV4=0.64,1,1,1 GT:PL:GQ 0/1:255,0,196:99 chr2 676457 . G C 60 . DP=37;VDB=0.0118;AF1=0.5;AC1=1;DP4=14,3,16,3;MQ=58;FQ=63;PV4=1,3e-17,0.046,0.16 GT:PL:GQ 0/1:90,0,239:93 chr2 676478 . TGT TGTAAGT 217 . INDEL;DP=52;VDB=0.0298;AF1=0.5;AC1=1;DP4=19,5,22,5;MQ=55;FQ=217;PV4=1,1,0.00011,1 GT:PL:GQ 0/1:255,0,255:99 chr2 677213 . G A 24 . DP=8;VDB=0.0003;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=60;FQ=27;PV4=1,7.9e-06,1,0.22 GT:PL:GQ 0/1:54,0,79:57 chr2 677295 . C T 182 . DP=41;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,5,18,4;MQ=60;FQ=185;PV4=0.71,0.0012,1,0.069 GT:PL:GQ 0/1:212,0,242:99 chr2 905393 . C G 194 . DP=9;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,3,6;MQ=56;FQ=-54 GT:PL:GQ 1/1:227,27,0:51 chr2 905399 . T G 99.1 . DP=8;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,2,5;MQ=54;FQ=-48 GT:PL:GQ 1/1:132,21,0:39 chr2 905427 . C G 23 . DP=3;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:55,9,0:15 chr2 1079130 . G A 103 . DP=30;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,0,14,2;MQ=59;FQ=106;PV4=0.49,2.6e-10,0.18,1 GT:PL:GQ 0/1:133,0,168:99 chr2 1079132 . G A 152 . DP=31;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,0,14,2;MQ=59;FQ=145;PV4=0.48,7.9e-07,0.17,1 GT:PL:GQ 0/1:182,0,172:99 chr2 1079143 . A G 222 . DP=43;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,38,4;MQ=58;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr2 1079320 . C T 222 . DP=58;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,39;MQ=59;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr2 1133367 . G A 182 . DP=28;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,7,2,10;MQ=60;FQ=185;PV4=0.054,1,1,1 GT:PL:GQ 0/1:212,0,255:99 chr2 1168756 . G A 171 . DP=39;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,21,16;MQ=60;FQ=-138 GT:PL:GQ 1/1:204,111,0:99 chr2 1168982 . T A 7.59 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr2 1418192 . C G 54 . DP=36;VDB=0.0322;AF1=0.5;AC1=1;DP4=20,4,11,1;MQ=60;FQ=57;PV4=0.65,7.1e-08,1,1 GT:PL:GQ 0/1:84,0,255:87 chr2 1418210 . G A 140 . DP=40;VDB=0.0244;AF1=0.5;AC1=1;DP4=22,4,12,1;MQ=59;FQ=143;PV4=0.65,1,1,1 GT:PL:GQ 0/1:170,0,255:99 chr2 1426787 . G A 225 . DP=32;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,2,9,6;MQ=59;FQ=184;PV4=0.21,0.36,1,0.18 GT:PL:GQ 0/1:255,0,211:99 chr2 1437163 . A C 196 . DP=28;VDB=0.0081;AF1=0.5;AC1=1;DP4=10,3,13,2;MQ=59;FQ=198;PV4=0.64,0.15,1,1 GT:PL:GQ 0/1:226,0,231:99 chr2 1437410 . C T 161 . DP=19;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,6,2,8;MQ=60;FQ=115;PV4=1,0.43,1,0.45 GT:PL:GQ 0/1:191,0,142:99 chr2 1442476 . T C 26 . DP=27;VDB=0.0164;AF1=0.5;AC1=1;DP4=15,1,9,1;MQ=58;FQ=29;PV4=1,1.5e-12,0.37,1 GT:PL:GQ 0/1:56,0,205:59 chr2 1442551 . attttttttttttttttt attttttttttttt,atttttttttttttt,atttttttttttt 110 . INDEL;DP=51;VDB=0.0365;AF1=1;AC1=2;DP4=5,3,9,8;MQ=58;FQ=-41.5;PV4=1,1,0.17,0.3 GT:PL:GQ 1/1:149,7,0,140,1,133,152,16,124,138:12 chr2 1457364 . A G 199 . DP=57;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,43,7;MQ=60;FQ=-178 GT:PL:GQ 1/1:232,151,0:99 chr2 1459806 . A G 67 . DP=18;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,15,0;MQ=60;FQ=-72 GT:PL:GQ 1/1:100,45,0:87 chr2 1460004 . G T 197 . DP=40;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,13,25;MQ=59;FQ=-141 GT:PL:GQ 1/1:230,114,0:99 chr2 1460140 . A G 25.1 . DP=7;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:58,18,0:32 chr2 1480698 . G C 21.5 . DP=6;VDB=0.0001;AF1=0.5554;AC1=1;DP4=1,0,3,1;MQ=60;FQ=-20;PV4=1,0.27,1,1 GT:PL:GQ 0/1:51,0,7:10 chr2 1481231 . G C 9.52 . DP=5;VDB=0.0124;AF1=0.5;AC1=1;DP4=0,3,1,1;MQ=60;FQ=12.3;PV4=0.4,0.043,1,1 GT:PL:GQ 0/1:39,0,77:41 chr2 1488668 . T C 52 . DP=11;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:85,30,0:57 chr2 1491497 . T C 207 . DP=21;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,1;MQ=60;FQ=-87 GT:PL:GQ 1/1:240,60,0:99 chr2 1497442 . A G 73 . DP=16;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,15,0;MQ=60;FQ=-72 GT:PL:GQ 1/1:106,45,0:87 chr2 1497803 . C T 179 . DP=44;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,21,2,13;MQ=59;FQ=182;PV4=1,1,0.36,1 GT:PL:GQ 0/1:209,0,255:99 chr2 1499899 . C T 164 . DP=37;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,20,13;MQ=59;FQ=-126 GT:PL:GQ 1/1:197,99,0:99 chr2 1499927 . A C 202 . DP=41;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,18;MQ=59;FQ=-141 GT:PL:GQ 1/1:235,114,0:99 chr2 1500665 . C T 17.1 . DP=4;VDB=0.0027;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:49,9,0:15 chr2 1507598 . G T 47 . DP=41;VDB=0.0164;AF1=0.5;AC1=1;DP4=17,4,20,0;MQ=60;FQ=50;PV4=0.11,3.1e-14,1,1 GT:PL:GQ 0/1:77,0,246:80 chr2 1520676 . T C 181 . DP=30;VDB=0.0118;AF1=0.5;AC1=1;DP4=10,4,14,2;MQ=60;FQ=184;PV4=0.38,1,1,0.39 GT:PL:GQ 0/1:211,0,223:99 chr2 1544539 . G T 100 . DP=54;VDB=0.0384;AF1=0.5;AC1=1;DP4=14,10,9,18;MQ=60;FQ=103;PV4=0.095,8.9e-23,0.18,0.46 GT:PL:GQ 0/1:130,0,255:99 chr2 1544617 . G A 225 . DP=63;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,11,14,18;MQ=60;FQ=225;PV4=0.13,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 1546361 . G T 100 . DP=144;VDB=0.0365;AF1=0.5;AC1=1;DP4=23,51,23,41;MQ=59;FQ=103;PV4=0.59,1.5e-56,0.03,1 GT:PL:GQ 0/1:130,0,255:99 chr2 1642545 . C G 42.3 . DP=5;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,5,0;MQ=44;FQ=-42 GT:PL:GQ 1/1:75,15,0:27 chr2 1647171 . T C 222 . DP=49;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,38,11;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr2 1651842 . C A 55 . DP=23;VDB=0.0216;AF1=0.5;AC1=1;DP4=12,1,8,1;MQ=58;FQ=58;PV4=1,0.00028,0.4,1 GT:PL:GQ 0/1:85,0,185:88 chr2 1652822 . T G 222 . DP=43;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,20,19;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr2 1664654 . A G 217 . DP=14;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,11,2;MQ=60;FQ=-66 GT:PL:GQ 1/1:250,39,0:75 chr2 1667310 . G A 195 . DP=41;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,32,8;MQ=60;FQ=-147 GT:PL:GQ 1/1:228,120,0:99 chr2 1696510 . AACACACA AACACA 192 . INDEL;DP=15;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,6,1,7;MQ=60;FQ=195;PV4=1,0.00034,1,0.41 GT:PL:GQ 0/1:230,0,255:99 chr2 1813057 . G T 83 . DP=38;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,17,4,11;MQ=60;FQ=86;PV4=1,1.7e-13,1,0.066 GT:PL:GQ 0/1:113,0,255:99 chr2 1893133 . C T 168 . DP=45;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,8,17,9;MQ=60;FQ=171;PV4=0.76,8.3e-14,1,1 GT:PL:GQ 0/1:198,0,255:99 chr2 1925993 . C T 54 . DP=10;VDB=0.0140;AF1=0.5;AC1=1;DP4=2,0,8,0;MQ=60;FQ=16.1;PV4=1,6.3e-06,1,1 GT:PL:GQ 0/1:84,0,43:46 chr2 1926437 . G T 180 . DP=109;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,57,46;MQ=59;FQ=-282 GT:PL:GQ 1/1:213,255,0:99 chr2 1946646 . A C 222 . DP=84;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,60,19;MQ=59;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr2 1946914 . A G 222 . DP=51;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,25,16;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr2 1946968 . C T 111 . DP=92;VDB=0.0244;AF1=0.5;AC1=1;DP4=24,32,18,17;MQ=58;FQ=114;PV4=0.52,4.9e-25,1,1 GT:PL:GQ 0/1:141,0,255:99 chr2 1982915 . GAAAAAAAAA GAAAAAAAA 8.18 . INDEL;DP=75;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,15,13,19;MQ=60;FQ=6.21;PV4=0.23,4.2e-05,1,1 GT:PL:GQ 0/1:45,0,41:43 chr2 1983374 . A C 85 . DP=40;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,11,8,9;MQ=60;FQ=88;PV4=1,4.1e-16,1,0.45 GT:PL:GQ 0/1:115,0,255:99 chr2 1983619 . A G 5.46 . DP=12;VDB=0.0159;AF1=0.4999;AC1=1;DP4=1,9,0,2;MQ=60;FQ=7.8;PV4=1,1,1,0.2 GT:PL:GQ 0/1:34,0,162:34 chr2 3212247 . G T 72 . DP=22;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,22,0;MQ=60;FQ=-93 GT:PL:GQ 1/1:105,66,0:99 chr2 3217794 . T C 47.1 . DP=8;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,7,0;MQ=49;FQ=-48 GT:PL:GQ 1/1:80,21,0:39 chr2 3217908 . G C 222 . DP=66;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,41,24;MQ=59;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr2 3277947 . T A 72.5 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:105,12,0:21 chr2 3322700 . G A 62 . DP=89;VDB=0.0400;AF1=0.5;AC1=1;DP4=34,22,18,14;MQ=60;FQ=65;PV4=0.82,2.2e-41,1,0.18 GT:PL:GQ 0/1:92,0,255:95 chr2 3356953 . A T 222 . DP=78;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,64,14;MQ=60;FQ=-262 GT:PL:GQ 1/1:255,235,0:99 chr2 3358458 . ATTATGAAGTTAGATTTA ATTA 152 . INDEL;DP=23;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,3,8;MQ=32;FQ=-67.5 GT:PL:GQ 1/1:193,33,0:63 chr2 3391826 . C T 29 . DP=10;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,1,3,1;MQ=60;FQ=32;PV4=1,0.00032,1,1 GT:PL:GQ 0/1:59,0,135:62 chr2 3392021 . C T 121 . DP=57;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,8,24,10;MQ=58;FQ=124;PV4=0.77,4e-18,1,1 GT:PL:GQ 0/1:151,0,255:99 chr2 3392075 . T C 157 . DP=62;VDB=0.0244;AF1=0.5;AC1=1;DP4=10,11,18,22;MQ=59;FQ=160;PV4=1,4.4e-17,0.48,0.31 GT:PL:GQ 0/1:187,0,255:99 chr2 3392295 . A G 119 . DP=58;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,14,17,8;MQ=60;FQ=122;PV4=0.59,4e-17,1,1 GT:PL:GQ 0/1:149,0,255:99 chr2 3393565 . c cAA 217 . INDEL;DP=29;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,8,7,9;MQ=60;FQ=217;PV4=0.7,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 3425514 . G C 139 . DP=68;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,30,6,23;MQ=60;FQ=142;PV4=1,7e-17,1,0.26 GT:PL:GQ 0/1:169,0,255:99 chr2 3469278 . C G 3.54 . DP=4;VDB=0.0147;AF1=0.4998;AC1=1;DP4=2,0,2,0;MQ=54;FQ=5.45;PV4=1,0.0086,1,1 GT:PL:GQ 0/1:31,0,53:30 chr2 3469463 . G C 131 . DP=18;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,1,17;MQ=59;FQ=-81 GT:PL:GQ 1/1:164,54,0:99 chr2 3469506 . T C 149 . DP=14;VDB=0.0392;AF1=0.5;AC1=1;DP4=0,5,1,8;MQ=60;FQ=79;PV4=1,0.34,1,0.44 GT:PL:GQ 0/1:179,0,106:99 chr2 3470115 . T C 222 . DP=77;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,38,38;MQ=59;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr2 3470124 . G A 187 . DP=81;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,30,41;MQ=60;FQ=-241 GT:PL:GQ 1/1:220,214,0:99 chr2 3470186 . G C 221 . DP=50;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,36;MQ=60;FQ=-171 GT:PL:GQ 1/1:254,144,0:99 chr2 3470254 . T G 171 . DP=19;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,0,16;MQ=60;FQ=-75 GT:PL:GQ 1/1:204,48,0:93 chr2 3481637 . T C 219 . DP=27;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,15;MQ=60;FQ=-108 GT:PL:GQ 1/1:252,81,0:99 chr2 3481659 . G A 222 . DP=25;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,10,15;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr2 3481716 . T C 157 . DP=13;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:190,36,0:69 chr2 3482722 . C T 225 . DP=41;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,8,11,13;MQ=60;FQ=225;PV4=1,0.21,1,0.37 GT:PL:GQ 0/1:255,0,255:99 chr2 3482796 . T G 59 . DP=19;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,11,0,6;MQ=60;FQ=62;PV4=1,0.23,1,1 GT:PL:GQ 0/1:89,0,188:92 chr2 3483181 . C T 174 . DP=96;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,42,14,33;MQ=60;FQ=177;PV4=0.047,1.9e-21,1,0.41 GT:PL:GQ 0/1:204,0,255:99 chr2 3483205 . C T 199 . DP=86;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,19,62;MQ=60;FQ=-271 GT:PL:GQ 1/1:232,244,0:99 chr2 3483390 . T G 18.8 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:50,6,0:10 chr2 3488502 . A G 222 . DP=73;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,49,22;MQ=60;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr2 3502909 . A ACTT 217 . INDEL;DP=45;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,21,3,14;MQ=54;FQ=217;PV4=1,1,0.0033,1 GT:PL:GQ 0/1:255,0,255:99 chr2 3502932 . G A 89 . DP=31;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,18,1,7;MQ=58;FQ=92;PV4=1,1,1,1 GT:PL:GQ 0/1:119,0,255:99 chr2 3504290 . GTGTACCTGCCGCCGCATGTACCTGCCGCCGC GTGTACCTGCCGCCGC 23.5 . INDEL;DP=4;VDB=0.0007;AF1=0.5;AC1=1;DP4=1,0,3,0;MQ=39;FQ=13.5;PV4=1,1,0,1 GT:PL:GQ 0/1:61,0,48:51 chr2 3504687 . A G 225 . DP=135;VDB=0.0392;AF1=0.5;AC1=1;DP4=35,25,37,35;MQ=60;FQ=225;PV4=0.48,0.083,1,0.48 GT:PL:GQ 0/1:255,0,255:99 chr2 3504819 . A G 220 . DP=55;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,22,3,25;MQ=60;FQ=181;PV4=1,1,1,0.39 GT:PL:GQ 0/1:250,0,208:99 chr2 3504893 . GAAA GAAAA 11.8 . INDEL;DP=5;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=8.21;PV4=1,1,1,1 GT:PL:GQ 0/1:49,0,43:45 chr2 3523324 . A G 81 . DP=7;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,2,1,3;MQ=60;FQ=36;PV4=1,1,1,1 GT:PL:GQ 0/1:111,0,63:66 chr2 3593384 . C T 185 . DP=166;VDB=0.0380;AF1=0.5;AC1=1;DP4=39,47,46,32;MQ=60;FQ=188;PV4=0.088,2.2e-48,0.15,0.31 GT:PL:GQ 0/1:215,0,255:99 chr2 3605468 . A G 222 . DP=60;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,18,38;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr2 3605528 . T G 172 . DP=22;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,16;MQ=60;FQ=-93 GT:PL:GQ 1/1:205,66,0:99 chr2 3605538 . A C 152 . DP=21;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,4,15;MQ=60;FQ=-84 GT:PL:GQ 1/1:185,57,0:99 chr2 3627648 . G C 177 . DP=43;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,16,24;MQ=60;FQ=-147 GT:PL:GQ 1/1:210,120,0:99 chr2 3652616 . G C 222 . DP=45;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,27,18;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr2 3653576 . A G 118 . DP=7;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:151,18,0:33 chr2 3653844 . T C 152 . DP=20;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,4,13;MQ=59;FQ=-78 GT:PL:GQ 1/1:185,51,0:99 chr2 3660752 . T C 19.8 . DP=3;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:51,6,0:10 chr2 3685046 . T C 61 . DP=9;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:94,27,0:51 chr2 3685074 . A G 220 . DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,2;MQ=60;FQ=-72 GT:PL:GQ 1/1:253,45,0:87 chr2 3718646 . G A 94 . DP=11;VDB=0.0033;AF1=0.5;AC1=1;DP4=5,1,4,1;MQ=60;FQ=96.8;PV4=1,1,1,1 GT:PL:GQ 0/1:124,0,137:99 chr2 3718655 . A G 44 . DP=12;VDB=0.0033;AF1=0.5;AC1=1;DP4=6,1,4,1;MQ=60;FQ=47;PV4=1,0.018,1,1 GT:PL:GQ 0/1:74,0,151:77 chr2 3718692 . C T 199 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,5,8,4;MQ=60;FQ=202;PV4=1,1,1,1 GT:PL:GQ 0/1:229,0,243:99 chr2 3721632 . G A 56 . DP=6;VDB=0.0214;AF1=0.5;AC1=1;DP4=3,0,2,1;MQ=60;FQ=56;PV4=1,0.022,1,0.46 GT:PL:GQ 0/1:86,0,86:86 chr2 3721637 . Atctttctttctttctttcttt Atctttctttctttcttt 114 . INDEL;DP=6;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,0,2,1;MQ=60;FQ=100;PV4=1,0.062,1,0.22 GT:PL:GQ 0/1:152,0,135:99 chr2 3721729 . A G 36 . DP=8;VDB=0.0049;AF1=0.5;AC1=1;DP4=1,3,2,2;MQ=57;FQ=39;PV4=1,0.0045,0.18,1 GT:PL:GQ 0/1:66,0,99:69 chr2 3725964 . C T 48 . DP=10;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,0,7,0;MQ=60;FQ=40.6;PV4=1,5.7e-05,1,1 GT:PL:GQ 0/1:78,0,68:71 chr2 3726163 . T C 131 . DP=36;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,12,6,12;MQ=60;FQ=134;PV4=1,3.7e-09,1,1 GT:PL:GQ 0/1:161,0,255:99 chr2 3749084 . T C 181 . DP=71;VDB=0.0345;AF1=0.5;AC1=1;DP4=22,13,18,17;MQ=59;FQ=184;PV4=0.47,8.8e-16,1,0.39 GT:PL:GQ 0/1:211,0,255:99 chr2 3749151 . GGAAGAAGAAG GGAAGAAG 217 . INDEL;DP=52;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,21,1,17;MQ=58;FQ=217;PV4=0.38,3.1e-08,0.076,1 GT:PL:GQ 0/1:255,0,255:99 chr2 3774436 . C T 129 . DP=23;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,17,3;MQ=60;FQ=-87 GT:PL:GQ 1/1:162,60,0:99 chr2 3774448 . T C 30 . DP=29;VDB=0.0033;AF1=0.5;AC1=1;DP4=13,2,13,1;MQ=60;FQ=33;PV4=1,1.6e-11,1,0.052 GT:PL:GQ 0/1:60,0,216:63 chr2 3774519 . T C 222 . DP=60;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,41,18;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr2 3800383 . C T 225 . DP=75;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,26,14,21;MQ=60;FQ=225;PV4=0.46,0.33,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 3800496 . C T 225 . DP=61;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,18,10,26;MQ=60;FQ=225;PV4=1,0.1,1,0.23 GT:PL:GQ 0/1:255,0,255:99 chr2 3815250 . A G 47 . DP=20;VDB=0.0025;AF1=0.5;AC1=1;DP4=10,3,6,1;MQ=60;FQ=50;PV4=1,0.0012,1,0.051 GT:PL:GQ 0/1:77,0,235:80 chr2 3826324 . C T 65 . DP=24;VDB=0.0216;AF1=0.5;AC1=1;DP4=12,0,9,1;MQ=60;FQ=68;PV4=0.45,6e-10,1,1 GT:PL:GQ 0/1:95,0,158:98 chr2 3826387 . T C 225 . DP=67;VDB=0.0365;AF1=0.5;AC1=1;DP4=24,12,22,7;MQ=60;FQ=225;PV4=0.58,1,1,0.48 GT:PL:GQ 0/1:255,0,255:99 chr2 3826597 . G A 166 . DP=53;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,26,3,15;MQ=60;FQ=169;PV4=0.73,0.34,0.083,1 GT:PL:GQ 0/1:196,0,255:99 chr2 4135981 . C T 176 . DP=18;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,8;MQ=60;FQ=-78 GT:PL:GQ 1/1:209,51,0:99 chr2 4136145 . A G 145 . DP=6;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:178,18,0:33 chr2 7001249 . acacacacacccacacac acacacac 75.5 . INDEL;DP=29;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,7,0;MQ=29;FQ=-55.5 GT:PL:GQ 1/1:116,21,0:39 chr2 7005069 . C T 107 . DP=11;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,9,2;MQ=60;FQ=-60 GT:PL:GQ 1/1:140,33,0:63 chr2 7005369 . A G 222 . DP=23;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,12;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr2 7017903 . A G 50.1 . DP=8;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:83,18,0:33 chr2 7019079 . A G 222 . DP=26;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,16,9;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr2 7027323 . T A 141 . DP=69;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,12,53;MQ=60;FQ=-223 GT:PL:GQ 1/1:174,196,0:99 chr2 7046272 . Tacacacacacacacacacacacacacacacacacacacacacacacacacacaca Tacacacacacacacacacacacacacacacacacacacacacacacacaca 110 . INDEL;DP=5;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:150,9,0:16 chr2 7050426 . G C 144 . DP=155;VDB=0.0345;AF1=0.5;AC1=1;DP4=33,56,22,38;MQ=59;FQ=147;PV4=1,2e-35,0.0061,1 GT:PL:GQ 0/1:174,0,255:99 chr2 7050483 . Atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt ATGtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 178 . INDEL;DP=64;VDB=0.0190;AF1=0.5013;AC1=1;DP4=0,2,0,18;MQ=56;FQ=-11.8;PV4=1,1,0.28,1 GT:PL:GQ 0/1:217,1,24:26 chr2 7137067 . A G 76 . DP=21;VDB=0.0216;AF1=0.5;AC1=1;DP4=10,0,10,1;MQ=59;FQ=79;PV4=1,1.3e-10,0.18,0.25 GT:PL:GQ 0/1:106,0,160:99 chr2 7154632 . T C 222 . DP=104;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,69,29;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 7154826 . ATTTTTTTTT ATTTTTTTTTT 14.7 . INDEL;DP=61;VDB=0.0380;AF1=0.505;AC1=1;DP4=3,15,8,22;MQ=60;FQ=-17.6;PV4=0.5,1,0.22,0.2 GT:PL:GQ 0/1:52,0,17:20 chr2 7243449 . agtgtgtgtgtgtgtgtgtgtgt agtgtgtgtgtgtgtgt,agtgtgtgtgtgtgt 214 . INDEL;DP=48;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,42,6;MQ=30;FQ=-170 GT:PL:GQ 1/1:255,135,0,239,65,230:99 chr2 7386192 . T C 222 . DP=71;VDB=0.0118;AF1=1;AC1=2;DP4=1,0,60,7;MQ=60;FQ=-204;PV4=1,1,1,0.25 GT:PL:GQ 1/1:255,177,0:99 chr2 7403641 . tacacacacacacacacacacaca tACACACacacacacacacacacacacaca 214 . INDEL;DP=18;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,2;MQ=46;FQ=-67.5 GT:PL:GQ 1/1:255,33,0:63 chr2 7421569 . Ctgtgtgtgtgtgtgtgtgtctgtgtgtgcgtgtgtgtgtctgtgtgtgtgtgt CTGtgtgtgtgtgtgtgtgtgtctgtgtgtgcgtgtgtgtgtctgtgtgtgtgtgt 112 . INDEL;DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:152,12,0:21 chr2 7471674 . C A 6.98 . DP=15;VDB=0.0102;AF1=0.4999;AC1=1;DP4=2,11,1,1;MQ=57;FQ=9.53;PV4=0.37,1,1,1 GT:PL:GQ 0/1:36,0,189:37 chr2 7540646 . CAA CAAA 214 . INDEL;DP=44;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,16;MQ=60;FQ=-164 GT:PL:GQ 1/1:255,129,0:99 chr2 7540695 . C G 222 . DP=45;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,14,30;MQ=59;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr2 7540784 . T C 138 . DP=9;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:171,27,0:51 chr2 7594516 . G A 225 . DP=135;VDB=0.0345;AF1=0.5;AC1=1;DP4=56,19,38,18;MQ=60;FQ=225;PV4=0.44,0.0023,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 8178735 . A G 222 . DP=54;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,23,30;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr2 8178798 . C T 222 . DP=42;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,29;MQ=59;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr2 8822892 . Caaaaaaaaaaaaaaaaaaaaaaaaa Caaaaaaaaaaaaa,Caaaaaaaaaaaa 73.6 . INDEL;DP=11;VDB=0.0042;AF1=1;AC1=2;DP4=0,1,10,0;MQ=37;FQ=-51.5;PV4=0.091,1,0.012,0.38 GT:PL:GQ 1/1:115,18,1,99,0,97:31 chr2 8870814 . A G 137 . DP=58;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,12;MQ=60;FQ=-132 GT:PL:GQ 1/1:170,105,0:99 chr2 8877042 . G A 93 . DP=62;VDB=0.0392;AF1=0.5;AC1=1;DP4=29,11,18,3;MQ=60;FQ=96;PV4=0.34,3.7e-16,1,1 GT:PL:GQ 0/1:123,0,255:99 chr2 8887180 . A G 30 . DP=17;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,1,4,2;MQ=60;FQ=33;PV4=0.52,0.0001,1,1 GT:PL:GQ 0/1:60,0,172:63 chr2 8887426 . A G 166 . DP=22;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,9,2,10;MQ=60;FQ=140;PV4=1,1,1,0.17 GT:PL:GQ 0/1:196,0,167:99 chr2 8910987 . A T 42.1 . DP=39;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,2,5;MQ=60;FQ=-48 GT:PL:GQ 1/1:75,21,0:39 chr2 8911010 . T C 149 . DP=26;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,10,0,15;MQ=60;FQ=123;PV4=1,1,1,1 GT:PL:GQ 0/1:179,0,150:99 chr2 8916847 . A T 86 . DP=9;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:119,24,0:45 chr2 9419411 . G A 194 . DP=66;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,52,13;MQ=60;FQ=-223 GT:PL:GQ 1/1:227,196,0:99 chr2 9419415 . C T 157 . DP=68;VDB=0.0298;AF1=0.5;AC1=1;DP4=30,9,22,5;MQ=60;FQ=160;PV4=0.76,2.7e-12,0.12,1 GT:PL:GQ 0/1:187,0,255:99 chr2 9458460 . A G 61 . DP=4;VDB=0.0080;AF1=0.5016;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-6.18;PV4=1,1,1,1 GT:PL:GQ 0/1:91,0,22:25 chr2 9463454 . C T 142 . DP=66;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,31,6,24;MQ=59;FQ=145;PV4=0.53,3.8e-17,0.06,0.45 GT:PL:GQ 0/1:172,0,255:99 chr2 9467815 . C T 56 . DP=16;VDB=0.0190;AF1=0.5;AC1=1;DP4=10,0,5,0;MQ=60;FQ=59;PV4=1,0.066,1,1 GT:PL:GQ 0/1:86,0,157:89 chr2 9475337 . A G 185 . DP=91;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,19,18,29;MQ=60;FQ=188;PV4=0.2,4.8e-31,1,0.43 GT:PL:GQ 0/1:215,0,255:99 chr2 9484542 . C T 19.6 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:52,12,0:21 chr2 9484561 . TAAAAAAAAAA TAAAAAA 188 . INDEL;DP=10;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,8,2;MQ=50;FQ=-64.5 GT:PL:GQ 1/1:229,30,0:57 chr2 9491017 . C T 131 . DP=45;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,43;MQ=59;FQ=-159 GT:PL:GQ 1/1:164,132,0:99 chr2 9496291 . T C 163 . DP=131;VDB=0.0392;AF1=0.5;AC1=1;DP4=41,36,32,21;MQ=60;FQ=166;PV4=0.47,8.7e-28,0.11,0.5 GT:PL:GQ 0/1:193,0,255:99 chr2 9520959 . C T 29 . DP=21;VDB=0.0276;AF1=0.5;AC1=1;DP4=0,17,0,4;MQ=60;FQ=32;PV4=1,0.45,1,1 GT:PL:GQ 0/1:59,0,175:62 chr2 9528536 . G C 225 . DP=67;VDB=0.0393;AF1=0.5;AC1=1;DP4=16,11,24,12;MQ=60;FQ=225;PV4=0.6,1,1,0.077 GT:PL:GQ 0/1:255,0,255:99 chr2 9528801 . T C 4.77 . DP=12;VDB=0.0140;AF1=0.4999;AC1=1;DP4=0,6,0,4;MQ=60;FQ=6.99;PV4=1,0.00016,1,1 GT:PL:GQ 0/1:33,0,123:33 chr2 9540849 . C T 154 . DP=37;VDB=0.0398;AF1=0.5;AC1=1;DP4=10,8,11,8;MQ=60;FQ=157;PV4=1,4.4e-11,1,0.12 GT:PL:GQ 0/1:184,0,255:99 chr2 9547171 . G A 133 . DP=27;VDB=0.0053;AF1=0.5;AC1=1;DP4=3,9,6,9;MQ=60;FQ=136;PV4=0.68,6.5e-09,1,1 GT:PL:GQ 0/1:163,0,217:99 chr2 9552379 . C T 180 . DP=44;VDB=0.0322;AF1=0.5;AC1=1;DP4=20,0,21,2;MQ=59;FQ=143;PV4=0.49,0.41,1,1 GT:PL:GQ 0/1:210,0,170:99 chr2 9554255 . G A 100 . DP=17;VDB=0.0081;AF1=0.5;AC1=1;DP4=10,0,7,0;MQ=59;FQ=103;PV4=1,0.34,0.12,1 GT:PL:GQ 0/1:130,0,166:99 chr2 9554280 . A T 42 . DP=32;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,1,12,0;MQ=59;FQ=45;PV4=1,1.5e-14,0.1,0.49 GT:PL:GQ 0/1:72,0,216:75 chr2 9554461 . C A 130 . DP=67;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,29,12,17;MQ=60;FQ=133;PV4=0.062,1.3e-23,1,0.35 GT:PL:GQ 0/1:160,0,255:99 chr2 9569972 . A T 70 . DP=49;VDB=0.0271;AF1=0.5;AC1=1;DP4=23,8,16,2;MQ=60;FQ=73;PV4=0.29,2.8e-24,1,1 GT:PL:GQ 0/1:100,0,255:99 chr2 9571054 . C T 41.8 . DP=2;VDB=0.0124;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:73,6,0:10 chr2 9576553 . T C 46 . DP=9;VDB=0.0050;AF1=0.5;AC1=1;DP4=1,5,0,3;MQ=60;FQ=49;PV4=1,1,1,1 GT:PL:GQ 0/1:76,0,152:79 chr2 9583922 . A G 115 . DP=16;VDB=0.0019;AF1=0.5;AC1=1;DP4=1,7,0,8;MQ=60;FQ=118;PV4=1,1,1,1 GT:PL:GQ 0/1:145,0,168:99 chr2 9597276 . atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg,aTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 19.5 . INDEL;DP=8;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-37.5 GT:PL:GQ 1/1:103,49,46,57,0,54:6 chr2 9615556 . T C 36.8 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:68,6,0:10 chr2 9616035 . A G 11.3 . DP=6;VDB=0.0194;AF1=0.5;AC1=1;DP4=2,1,3,0;MQ=60;FQ=14.2;PV4=1,0.0023,1,1 GT:PL:GQ 0/1:41,0,91:43 chr2 9616301 . TAGGAG TAG 145 . INDEL;DP=6;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,1,0,5;MQ=60;FQ=8.19;PV4=1,0.089,1,0.35 GT:PL:GQ 0/1:183,0,42:45 chr2 9633137 . T G 117 . DP=46;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,18,10,9;MQ=59;FQ=120;PV4=0.23,3.7e-21,1,1 GT:PL:GQ 0/1:147,0,255:99 chr2 9634856 . A G 100 . DP=57;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,23,9,8;MQ=60;FQ=103;PV4=0.56,3.4e-20,0.066,0.43 GT:PL:GQ 0/1:130,0,255:99 chr2 9661184 . T C 140 . DP=23;VDB=0.0019;AF1=0.5;AC1=1;DP4=11,0,12,0;MQ=60;FQ=134;PV4=1,1,1,0.43 GT:PL:GQ 0/1:170,0,162:99 chr2 9661450 . A G 225 . DP=86;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,29,3,51;MQ=59;FQ=175;PV4=1,1,0.14,1 GT:PL:GQ 0/1:255,0,202:99 chr2 9770589 . gcggggccggggccggggc gCGGGGCcggggccggggccggggc 139 . INDEL;DP=31;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,10,3,5;MQ=54;FQ=142;PV4=1,1,1.2e-06,1 GT:PL:GQ 0/1:177,0,255:99 chr2 9981672 . T C 53.1 . DP=7;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:86,18,0:33 chr2 9983582 . C G 135 . DP=17;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,3,6,5;MQ=58;FQ=51;PV4=0.57,0.0078,0.28,0.37 GT:PL:GQ 0/1:165,0,78:81 chr2 9983591 . AG AGG 214 . INDEL;DP=19;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,7,12;MQ=59;FQ=-91.5 GT:PL:GQ 1/1:255,57,0:99 chr2 9983704 . A G 75.2 . DP=5;VDB=0.0313;AF1=0.5207;AC1=1;DP4=0,1,2,2;MQ=60;FQ=-16.1;PV4=1,1,1,0.34 GT:PL:GQ 0/1:105,0,11:14 chr2 9983716 . A C 3.41 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:32,6,0:4 chr2 9985247 . A T 37 . DP=38;VDB=0.0244;AF1=0.5;AC1=1;DP4=12,4,20,1;MQ=60;FQ=40;PV4=0.14,1e-15,1,1 GT:PL:GQ 0/1:67,0,253:70 chr2 9985341 . TCCC TCC 217 . INDEL;DP=93;VDB=0.0392;AF1=0.5;AC1=1;DP4=30,22,21,15;MQ=59;FQ=217;PV4=1,3.9e-08,1,0.4 GT:PL:GQ 0/1:255,0,255:99 chr2 9986102 . actct act 41.5 . INDEL;DP=5;VDB=0.0011;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=44.5;PV4=1,6e-05,1,0.49 GT:PL:GQ 0/1:79,0,137:82 chr2 10008872 . A G 27 . DP=33;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,14,3,16;MQ=59;FQ=30;PV4=0.24,2.3e-25,0.2,1 GT:PL:GQ 0/1:57,0,167:60 chr2 10044941 . G T 15.1 . DP=21;VDB=0.0025;AF1=0.5;AC1=1;DP4=11,0,8,0;MQ=60;FQ=18.1;PV4=1,2.6e-09,1,0.45 GT:PL:GQ 0/1:45,0,161:48 chr2 10045014 . C T 225 . DP=91;VDB=0.0380;AF1=0.5;AC1=1;DP4=35,8,34,11;MQ=59;FQ=225;PV4=0.61,0.12,0.083,1 GT:PL:GQ 0/1:255,0,255:99 chr2 10045024 . G A 222 . DP=101;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,76,21;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 10045147 . A G 222 . DP=91;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,16,72;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 10050947 . T C 92 . DP=36;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,13,4,11;MQ=60;FQ=95;PV4=0.72,1.1e-13,1,0.4 GT:PL:GQ 0/1:122,0,255:99 chr2 10050960 . A G 29 . DP=35;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,14,3,9;MQ=60;FQ=32;PV4=0.7,2.8e-14,1,1 GT:PL:GQ 0/1:59,0,255:62 chr2 10051053 . G C 3.54 . DP=10;VDB=0.0204;AF1=0.4998;AC1=1;DP4=0,7,0,3;MQ=60;FQ=5.47;PV4=1,6.6e-07,1,1 GT:PL:GQ 0/1:31,0,146:30 chr2 10053412 . C T 89 . DP=143;VDB=0.0345;AF1=0.5;AC1=1;DP4=24,36,26,55;MQ=60;FQ=92;PV4=0.38,1.7e-63,1,0.37 GT:PL:GQ 0/1:119,0,255:99 chr2 10059097 . A C 222 . DP=139;VDB=0.0322;AF1=1;AC1=2;DP4=1,0,83,54;MQ=59;FQ=-282;PV4=1,0.28,1,1 GT:PL:GQ 1/1:255,255,0:99 chr2 10059770 . G T 176 . DP=52;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,6,19,13;MQ=60;FQ=179;PV4=0.56,5.2e-19,1,0.47 GT:PL:GQ 0/1:206,0,255:99 chr2 10085270 . cctgtct cct 217 . INDEL;DP=63;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,9,17,12;MQ=58;FQ=217;PV4=0.3,1e-05,0.033,1 GT:PL:GQ 0/1:255,0,255:99 chr2 10183970 . A G 58.1 . DP=6;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:91,18,0:33 chr2 10186419 . A G 217 . DP=29;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,10;MQ=59;FQ=-111 GT:PL:GQ 1/1:250,84,0:99 chr2 10188649 . A T 191 . DP=62;VDB=0.0392;AF1=1;AC1=2;DP4=1,0,16,42;MQ=58;FQ=-176;PV4=0.29,0.023,1,1 GT:PL:GQ 1/1:224,149,0:99 chr2 10262859 . G A 210 . DP=81;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,29,48;MQ=59;FQ=-259 GT:PL:GQ 1/1:243,232,0:99 chr2 10262920 . T G 222 . DP=54;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,36;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr2 10264057 . T C 222 . DP=157;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,39,109;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 10282147 . T C 170 . DP=97;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,32,51;MQ=59;FQ=-277 GT:PL:GQ 1/1:203,250,0:99 chr2 10563233 . G A 121 . DP=59;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,23,9,20;MQ=60;FQ=124;PV4=0.55,1.1e-21,1,1 GT:PL:GQ 0/1:151,0,255:99 chr2 10563297 . G A 129 . DP=20;VDB=0.0014;AF1=0.5;AC1=1;DP4=1,7,0,12;MQ=60;FQ=128;PV4=0.4,0.17,1,1 GT:PL:GQ 0/1:159,0,157:99 chr2 10564528 . C T 92 . DP=25;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,2,14,1;MQ=59;FQ=95;PV4=0.53,3e-11,0.23,1 GT:PL:GQ 0/1:122,0,168:99 chr2 10595534 . T C 76 . DP=53;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,17,6,15;MQ=60;FQ=79;PV4=0.76,3.7e-19,1,1 GT:PL:GQ 0/1:106,0,255:99 chr2 10595578 . T C 120 . DP=36;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,10,9,10;MQ=59;FQ=123;PV4=0.73,1.4e-14,0.096,1 GT:PL:GQ 0/1:150,0,255:99 chr2 10717714 . G C 73 . DP=75;VDB=0.0365;AF1=0.5;AC1=1;DP4=34,4,31,4;MQ=60;FQ=76;PV4=1,5.4e-33,0.15,1 GT:PL:GQ 0/1:103,0,255:99 chr2 10729897 . C T 114 . DP=20;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,11,0,8;MQ=60;FQ=117;PV4=1,1,1,1 GT:PL:GQ 0/1:144,0,167:99 chr2 10743153 . C T 225 . DP=38;VDB=0.0373;AF1=0.5;AC1=1;DP4=10,5,17,6;MQ=60;FQ=225;PV4=0.72,0.09,1,0.24 GT:PL:GQ 0/1:255,0,255:99 chr2 10743191 . G A 116 . DP=67;VDB=0.0345;AF1=0.5;AC1=1;DP4=29,3,30,4;MQ=60;FQ=119;PV4=1,7e-21,1,0.42 GT:PL:GQ 0/1:146,0,255:99 chr2 10762302 . TAA TA 214 . INDEL;DP=38;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,6,30;MQ=60;FQ=-143 GT:PL:GQ 1/1:255,108,0:99 chr2 10808776 . C CAA 214 . INDEL;DP=19;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,8,10;MQ=60;FQ=-88.5 GT:PL:GQ 1/1:255,54,0:99 chr2 10813782 . T C,A 149 . DP=11;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:199,44,17,173,0,167:51 chr2 10815833 . A G 31 . DP=5;VDB=0.0223;AF1=0.5;AC1=1;DP4=2,0,2,1;MQ=60;FQ=31;PV4=1,0.012,1,0.25 GT:PL:GQ 0/1:61,0,61:61 chr2 10908893 . A G 218 . DP=32;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,10,22;MQ=60;FQ=-123 GT:PL:GQ 1/1:251,96,0:99 chr2 10911891 . T C 161 . DP=14;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,14,0;MQ=58;FQ=-69 GT:PL:GQ 1/1:194,42,0:81 chr2 10915020 . A G 210 . DP=65;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,35,27;MQ=60;FQ=-214 GT:PL:GQ 1/1:243,187,0:99 chr2 10922516 . A C 70 . DP=29;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,25;MQ=60;FQ=-108 GT:PL:GQ 1/1:103,81,0:99 chr2 10924524 . T C 120 . DP=8;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:153,21,0:39 chr2 10927345 . T C 181 . DP=9;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,6,2;MQ=60;FQ=-51 GT:PL:GQ 1/1:214,24,0:45 chr2 10928710 . A C 40.3 . DP=5;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:73,15,0:27 chr2 10928777 . A C 218 . DP=57;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,42,13;MQ=60;FQ=-193 GT:PL:GQ 1/1:251,166,0:99 chr2 10928906 . T C 222 . DP=59;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,21,37;MQ=59;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr2 10928962 . A G,C 128 . DP=46;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,22,21;MQ=59;FQ=-153 GT:PL:GQ 1/1:161,126,0,161,110,158:99 chr2 10929133 . A G 80 . DP=11;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:113,33,0:63 chr2 10929867 . T C 222 . DP=54;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,32,17;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr2 10930050 . A T 107 . DP=30;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,4,24;MQ=60;FQ=-111 GT:PL:GQ 1/1:140,84,0:99 chr2 10930903 . T C 191 . DP=91;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,21,62;MQ=60;FQ=-277 GT:PL:GQ 1/1:224,250,0:99 chr2 10932082 . T C 97 . DP=27;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,26;MQ=59;FQ=-105 GT:PL:GQ 1/1:130,78,0:99 chr2 10933249 . C T 204 . DP=63;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,21,35;MQ=57;FQ=-196 GT:PL:GQ 1/1:237,169,0:99 chr2 10933346 . TAGGC TAGGCAGGC 141 . INDEL;DP=12;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,8;MQ=39;FQ=-58.5 GT:PL:GQ 1/1:182,24,0:45 chr2 10937037 . T G 30.5 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:63,12,0:21 chr2 10937065 . T C 136 . DP=8;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:169,24,0:45 chr2 10937409 . C T 94.3 . DP=6;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:127,15,0:27 chr2 10942567 . G A 62 . DP=3;VDB=0.0030;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:94,9,0:16 chr2 10942687 . C T 200 . DP=93;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,60,27;MQ=60;FQ=-282 GT:PL:GQ 1/1:233,255,0:99 chr2 10950284 . G C 222 . DP=39;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,34,4;MQ=58;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr2 10952790 . T C 222 . DP=23;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,8;MQ=58;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr2 10961184 . A G 7.59 . DP=2;VDB=0.0178;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr2 10987801 . G A 42 . DP=15;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,6,1,7;MQ=60;FQ=45;PV4=1,2.7e-06,1,1 GT:PL:GQ 0/1:72,0,143:75 chr2 10994418 . T C 60 . DP=4;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:92,9,0:16 chr2 11053020 . A G 215 . DP=30;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,6,23;MQ=59;FQ=-114 GT:PL:GQ 1/1:248,87,0:99 chr2 11053740 . C T 178 . DP=65;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,19,16,17;MQ=59;FQ=181;PV4=0.62,1.2e-17,1,0.41 GT:PL:GQ 0/1:208,0,255:99 chr2 11264830 . G A 180 . DP=78;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,19,22,15;MQ=59;FQ=183;PV4=0.49,1.4e-23,0.075,1 GT:PL:GQ 0/1:210,0,255:99 chr2 11273407 . GTCTCTCTCTCTCTCTCTCT GTCTCTCTCTCTCTCTCTCTCTCT 37.5 . INDEL;DP=16;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,2,3,0;MQ=60;FQ=40.5;PV4=1,1,1,1 GT:PL:GQ 0/1:75,0,231:78 chr2 11295867 . G C 34 . DP=8;VDB=0.0384;AF1=0.5;AC1=1;DP4=1,2,2,3;MQ=60;FQ=35.3;PV4=1,0.00049,1,0.39 GT:PL:GQ 0/1:64,0,67:65 chr2 11300732 . C T 222 . DP=97;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,42,51;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 11300869 . T C 222 . DP=45;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,15,30;MQ=58;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr2 11312181 . G A 113 . DP=15;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,13;MQ=60;FQ=-69 GT:PL:GQ 1/1:146,42,0:81 chr2 11312224 . C T 53.5 . DP=5;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:86,12,0:21 chr2 11333994 . T G 48 . DP=29;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,10,2,14;MQ=60;FQ=51;PV4=1,1.2e-12,1,1 GT:PL:GQ 0/1:78,0,166:81 chr2 11348609 . CAAATAAA CAAA 49.5 . INDEL;DP=8;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,6,0,2;MQ=60;FQ=52.5;PV4=1,0.33,1,0.42 GT:PL:GQ 0/1:87,0,206:90 chr2 11356190 . G A 65 . DP=6;VDB=0.0224;AF1=0.5;AC1=1;DP4=2,1,2,1;MQ=60;FQ=60.2;PV4=1,1,1,1 GT:PL:GQ 0/1:95,0,88:90 chr2 11357100 . G A 31 . DP=3;VDB=0.0199;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:63,9,0:16 chr2 11359031 . G T 65.1 . DP=6;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,1;MQ=60;FQ=-45 GT:PL:GQ 1/1:98,18,0:33 chr2 11680896 . CAAA CA 217 . INDEL;DP=13;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,3,1,7;MQ=60;FQ=166;PV4=0.51,1,1,0.48 GT:PL:GQ 0/1:255,0,201:99 chr2 11718302 . C A 11.3 . DP=5;VDB=0.0114;AF1=0.5;AC1=1;DP4=3,0,1,1;MQ=60;FQ=14.2;PV4=0.4,4.7e-05,1,0.14 GT:PL:GQ 0/1:41,0,88:43 chr2 11718591 . C T 35 . DP=14;VDB=0.0006;AF1=0.5;AC1=1;DP4=1,5,0,7;MQ=60;FQ=38;PV4=0.46,1.1e-05,1,1 GT:PL:GQ 0/1:65,0,138:68 chr2 11720986 . G A 69 . DP=41;VDB=0.0118;AF1=0.5;AC1=1;DP4=5,14,2,20;MQ=59;FQ=72;PV4=0.22,2.5e-15,1,1 GT:PL:GQ 0/1:99,0,255:99 chr2 11725241 . G A 168 . DP=82;VDB=0.0271;AF1=0.5;AC1=1;DP4=25,19,20,16;MQ=60;FQ=171;PV4=1,6.3e-18,1,1 GT:PL:GQ 0/1:198,0,255:99 chr2 11725947 . T C 5.46 . DP=7;VDB=0.0183;AF1=0.4999;AC1=1;DP4=4,0,3,0;MQ=60;FQ=7.8;PV4=1,0.0064,1,1 GT:PL:GQ 0/1:34,0,79:34 chr2 11726061 . GA GAA 129 . INDEL;DP=11;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,4,2,4;MQ=60;FQ=77.5;PV4=1,1,1,0.22 GT:PL:GQ 0/1:167,0,112:99 chr2 11727393 . TG T 217 . INDEL;DP=61;VDB=0.0271;AF1=0.5;AC1=1;DP4=30,5,19,7;MQ=60;FQ=217;PV4=0.33,1.3e-16,0.12,1 GT:PL:GQ 0/1:255,0,255:99 chr2 11727507 . G A 222 . DP=83;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,31,49;MQ=60;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr2 11729096 . G A 45 . DP=26;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,13,0,11;MQ=60;FQ=48;PV4=1,2.5e-09,1,1 GT:PL:GQ 0/1:75,0,163:78 chr2 11731774 . T G 38.8 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:70,6,0:10 chr2 11736305 . G A 225 . DP=82;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,28,14,25;MQ=60;FQ=225;PV4=0.82,0.015,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 11738091 . T C 222 . DP=80;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,28,44;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr2 11738765 . C T 94.3 . DP=5;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:127,15,0:27 chr2 11741157 . A G 80 . DP=9;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:113,24,0:45 chr2 11751166 . C T 134 . DP=12;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,4,3,4;MQ=60;FQ=91;PV4=0.58,0.18,1,1 GT:PL:GQ 0/1:164,0,118:99 chr2 11752635 . T C 142 . DP=12;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,7;MQ=60;FQ=-60 GT:PL:GQ 1/1:175,33,0:63 chr2 11757009 . A G,T 202 . DP=16;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,15;MQ=60;FQ=-72 GT:PL:GQ 1/1:235,45,0,231,30,228:87 chr2 11757023 . C T 14.2 . DP=8;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=17.1;PV4=1,0.00073,1,1 GT:PL:GQ 0/1:44,0,72:47 chr2 11774324 . G A 202 . DP=67;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,12,20,18;MQ=59;FQ=205;PV4=1,2.2e-08,1,1 GT:PL:GQ 0/1:232,0,255:99 chr2 11780565 . G A 106 . DP=98;VDB=0.0384;AF1=0.5;AC1=1;DP4=17,43,10,24;MQ=60;FQ=109;PV4=1,2.3e-23,0.029,1 GT:PL:GQ 0/1:136,0,255:99 chr2 11810095 . G A 204 . DP=10;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,4,6;MQ=60;FQ=-57 GT:PL:GQ 1/1:237,30,0:57 chr2 11818019 . G A 98 . DP=8;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,2,0,6;MQ=60;FQ=23;PV4=1,0.1,1,0.2 GT:PL:GQ 0/1:128,0,50:53 chr2 11853913 . G A 3.01 . DP=22;VDB=0.0244;AF1=0.4997;AC1=1;DP4=10,4,7,0;MQ=60;FQ=4.77;PV4=0.25,1.9e-11,1,1 GT:PL:GQ 0/1:30,0,255:28 chr2 11853963 . C T 121 . DP=29;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,5,9,6;MQ=60;FQ=124;PV4=1,1.2e-10,1,1 GT:PL:GQ 0/1:151,0,236:99 chr2 11853964 . G A 202 . DP=29;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,6,8,5;MQ=60;FQ=205;PV4=1,0.42,1,0.48 GT:PL:GQ 0/1:232,0,255:99 chr2 11905636 . GTTTTTTTTT GTTTTTTTT 27.5 . INDEL;DP=34;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,25,7;MQ=60;FQ=-131 GT:PL:GQ 1/1:68,96,0:99 chr2 11905876 . C T 37 . DP=10;VDB=0.0020;AF1=0.5;AC1=1;DP4=2,5,0,3;MQ=60;FQ=40;PV4=1,0.46,1,0.47 GT:PL:GQ 0/1:67,0,175:70 chr2 11907842 . C T 65 . DP=54;VDB=0.0271;AF1=0.5;AC1=1;DP4=24,7,18,4;MQ=60;FQ=68;PV4=0.75,4.3e-26,1,1 GT:PL:GQ 0/1:95,0,255:98 chr2 11911761 . C T 125 . DP=35;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,14,4,15;MQ=60;FQ=128;PV4=0.67,1.5e-14,1,1 GT:PL:GQ 0/1:155,0,219:99 chr2 11924950 . T C 225 . DP=40;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,5,16,9;MQ=60;FQ=174;PV4=1,0.44,1,0.37 GT:PL:GQ 0/1:255,0,201:99 chr2 11928423 . C T 51 . DP=18;VDB=0.0099;AF1=0.5;AC1=1;DP4=7,1,9,1;MQ=60;FQ=54;PV4=1,6.7e-07,1,1 GT:PL:GQ 0/1:81,0,143:84 chr2 11932173 . G T 61 . DP=29;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,13,2,13;MQ=59;FQ=64;PV4=1,8.1e-13,0.17,1 GT:PL:GQ 0/1:91,0,195:94 chr2 11936798 . A G 9.49 . DP=3;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:41,9,0:12 chr2 11944746 . TGGGGG TGGGG 5.08 . INDEL;DP=8;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=5.08;PV4=1,2.8e-05,1,0.049 GT:PL:GQ 0/1:41,0,41:40 chr2 12877501 . G GA 217 . INDEL;DP=69;VDB=0.0384;AF1=0.5;AC1=1;DP4=27,13,18,10;MQ=60;FQ=217;PV4=0.8,1,1,0.46 GT:PL:GQ 0/1:255,0,255:99 chr2 13554931 . A G 225 . DP=33;VDB=0.0066;AF1=0.5;AC1=1;DP4=11,6,10,6;MQ=60;FQ=225;PV4=1,0.39,1,0.4 GT:PL:GQ 0/1:255,0,255:99 chr2 15415525 . C T 172 . DP=29;VDB=0.0164;AF1=0.5;AC1=1;DP4=13,0,14,1;MQ=60;FQ=139;PV4=1,0.23,1,0.24 GT:PL:GQ 0/1:202,0,166:99 chr2 15427173 . C T 225 . DP=73;VDB=0.0392;AF1=0.5;AC1=1;DP4=27,14,18,13;MQ=60;FQ=225;PV4=0.62,0.11,0.13,0.32 GT:PL:GQ 0/1:255,0,255:99 chr2 15448311 . A T 74 . DP=59;VDB=0.0271;AF1=0.5;AC1=1;DP4=19,11,23,4;MQ=60;FQ=77;PV4=0.077,2.3e-23,1,1 GT:PL:GQ 0/1:104,0,255:99 chr2 15468025 . T C 225 . DP=71;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,38,5,22;MQ=59;FQ=225;PV4=0.74,0.32,0.36,1 GT:PL:GQ 0/1:255,0,255:99 chr2 15470848 . C T 198 . DP=39;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,17,2,17;MQ=59;FQ=201;PV4=1,0.12,1,0.12 GT:PL:GQ 0/1:228,0,255:99 chr2 15491994 . Gcacacacacacacacacacacacacacacacaca Gcacacacacacacacacacacaca,Gcacacacacacacacacacaca,Gcacacacacacacacacaca 157 . INDEL;DP=59;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,38,4;MQ=32;FQ=-137 GT:PL:GQ 1/1:255,159,57,178,0,157,254,134,160,251:99 chr2 15493881 . A G 222 . DP=50;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,9,38;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr2 15519992 . G T 111 . DP=10;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,5,5;MQ=60;FQ=-57 GT:PL:GQ 1/1:144,30,0:57 chr2 15523266 . A T 3.41 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:32,6,0:4 chr2 15523307 . taaaaaaaaa taaaaaaaa 8.23 . INDEL;DP=7;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-55.5 GT:PL:GQ 1/1:48,21,0:25 chr2 15523549 . T C 102 . DP=5;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:135,15,0:27 chr2 15533689 . T C 31.1 . DP=6;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,6,0;MQ=47;FQ=-45 GT:PL:GQ 1/1:64,18,0:33 chr2 15533732 . G C 81 . DP=25;VDB=0.0000;AF1=0.5;AC1=1;DP4=15,0,7,3;MQ=36;FQ=84;PV4=0.052,1.1e-14,0.26,0.018 GT:PL:GQ 0/1:111,0,137:99 chr2 15533734 . G C 88 . DP=27;VDB=0.0000;AF1=0.5;AC1=1;DP4=15,0,7,3;MQ=36;FQ=91;PV4=0.052,2.9e-13,0.26,0.03 GT:PL:GQ 0/1:118,0,141:99 chr2 15533779 . G A 222 . DP=43;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,24,19;MQ=40;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr2 15533884 . C A 114 . DP=22;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,21;MQ=40;FQ=-93 GT:PL:GQ 1/1:147,66,0:99 chr2 15533895 . A G 27.1 . DP=17;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,6;MQ=36;FQ=-45 GT:PL:GQ 1/1:60,18,0:33 chr2 15533899 . A G 39 . DP=13;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,9;MQ=42;FQ=-54 GT:PL:GQ 1/1:72,27,0:51 chr2 15542296 . A G 225 . DP=51;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,7,26,5;MQ=60;FQ=225;PV4=0.18,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 15567649 . T C 108 . DP=6;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:141,18,0:33 chr2 15601287 . A AT 59.5 . INDEL;DP=15;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,13,2;MQ=60;FQ=-79.5 GT:PL:GQ 1/1:100,45,0:87 chr2 15601441 . C T 222 . DP=100;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,40,58;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 15601574 . C T 43.1 . DP=7;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:76,21,0:39 chr2 15607842 . T C 107 . DP=45;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,9,11;MQ=60;FQ=-87 GT:PL:GQ 1/1:140,60,0:99 chr2 15608013 . C A 7.59 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr2 15614404 . T C 190 . DP=63;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,45;MQ=60;FQ=-202 GT:PL:GQ 1/1:223,175,0:99 chr2 15615910 . A G 222 . DP=116;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,51,60;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 15616013 . C G 145 . DP=37;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,5,30;MQ=60;FQ=-132 GT:PL:GQ 1/1:178,105,0:99 chr2 15616030 . C T 215 . DP=22;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,21;MQ=60;FQ=-93 GT:PL:GQ 1/1:248,66,0:99 chr2 15618339 . G A 200 . DP=14;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:233,39,0:75 chr2 15644107 . C A 57 . DP=13;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:90,39,0:75 chr2 15644111 . C T 93 . DP=16;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,16,0;MQ=60;FQ=-75 GT:PL:GQ 1/1:126,48,0:93 chr2 15644401 . C T 32 . DP=44;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:65,39,0:67 chr2 15674686 . T C 222 . DP=75;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,38,37;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr2 15676686 . G A 122 . DP=38;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,20;MQ=60;FQ=-102 GT:PL:GQ 1/1:155,75,0:99 chr2 15678368 . C T 149 . DP=10;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:182,30,0:57 chr2 15678482 . T C 178 . DP=29;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,10,18;MQ=60;FQ=-111 GT:PL:GQ 1/1:211,84,0:99 chr2 15678501 . GAAAAAAAAA GAAAAAAAA 67.5 . INDEL;DP=28;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,8,17;MQ=60;FQ=-110 GT:PL:GQ 1/1:108,75,0:99 chr2 15691886 . G A 5.29 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:35,6,0:6 chr2 15694164 . T TA 214 . INDEL;DP=82;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,59,23;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,247,0:99 chr2 15731998 . A G 151 . DP=15;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,0,8,2;MQ=60;FQ=51;PV4=0.52,1,1,1 GT:PL:GQ 0/1:181,0,78:81 chr2 15742570 . G A 153 . DP=38;VDB=0.0019;AF1=0.5;AC1=1;DP4=18,0,20,0;MQ=60;FQ=151;PV4=1,0.25,1,1 GT:PL:GQ 0/1:183,0,179:99 chr2 15747393 . C T 225 . DP=87;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,35,9,30;MQ=60;FQ=225;PV4=1,0.3,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr2 15768876 . G A 225 . DP=43;VDB=0.0384;AF1=0.5;AC1=1;DP4=10,13,7,13;MQ=60;FQ=225;PV4=0.76,0.06,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 15768981 . C G 137 . DP=8;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,2,3,3;MQ=60;FQ=15.1;PV4=0.46,1,1,1 GT:PL:GQ 0/1:167,0,42:45 chr2 15840505 . C A 225 . DP=58;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,8,19,6;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 15840522 . G T 128 . DP=66;VDB=0.0398;AF1=0.5;AC1=1;DP4=25,11,19,9;MQ=60;FQ=131;PV4=1,1.5e-29,1,0.23 GT:PL:GQ 0/1:158,0,255:99 chr2 15840645 . T C 113 . DP=53;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,22,7,18;MQ=60;FQ=116;PV4=0.32,7.8e-16,1,1 GT:PL:GQ 0/1:143,0,255:99 chr2 15841288 . G A 41 . DP=14;VDB=0.0025;AF1=0.5;AC1=1;DP4=7,0,7,0;MQ=58;FQ=44;PV4=1,0.0012,1,1 GT:PL:GQ 0/1:71,0,118:74 chr2 15884555 . G A 52 . DP=7;VDB=0.0116;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=54.9;PV4=1,1,1,1 GT:PL:GQ 0/1:82,0,99:85 chr2 16734284 . T C 225 . DP=85;VDB=0.0399;AF1=0.5;AC1=1;DP4=25,26,14,20;MQ=59;FQ=225;PV4=0.51,0.33,1,0.35 GT:PL:GQ 0/1:255,0,255:99 chr2 16743453 . A C 38 . DP=15;VDB=0.0359;AF1=0.5;AC1=1;DP4=1,7,0,6;MQ=58;FQ=41;PV4=1,3.6e-05,0.13,1 GT:PL:GQ 0/1:68,0,161:71 chr2 17696573 . C T 205 . DP=63;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,39,20;MQ=60;FQ=-205 GT:PL:GQ 1/1:238,178,0:99 chr2 17698678 . A G 222 . DP=48;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,15,30;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr2 17773524 . G A 222 . DP=21;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,4,17;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr2 17884495 . C T 138 . DP=23;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,5,7,2;MQ=60;FQ=141;PV4=0.65,0.0074,1,0.082 GT:PL:GQ 0/1:168,0,255:99 chr2 17888457 . G A 75 . DP=20;VDB=0.0244;AF1=0.5;AC1=1;DP4=8,2,8,2;MQ=60;FQ=78;PV4=1,1.3e-07,1,1 GT:PL:GQ 0/1:105,0,192:99 chr2 17898326 . C T 123 . DP=28;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,4,7,7;MQ=59;FQ=126;PV4=0.44,5.7e-11,1,0.45 GT:PL:GQ 0/1:153,0,254:99 chr2 17913266 . A C 182 . DP=19;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,19;MQ=60;FQ=-84 GT:PL:GQ 1/1:215,57,0:99 chr2 17927275 . C T 12.3 . DP=6;VDB=0.0116;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=15.1;PV4=1,4.2e-05,1,0.44 GT:PL:GQ 0/1:42,0,81:44 chr2 17941423 . T G 64 . DP=26;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,13,3,10;MQ=60;FQ=67;PV4=0.22,5.6e-15,1,1 GT:PL:GQ 0/1:94,0,167:97 chr2 17942775 . T A 225 . DP=147;VDB=0.0380;AF1=0.5;AC1=1;DP4=46,40,35,24;MQ=60;FQ=225;PV4=0.5,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 17954027 . G A 208 . DP=57;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,46;MQ=60;FQ=-196 GT:PL:GQ 1/1:241,169,0:99 chr2 17954140 . A G 36 . DP=3;VDB=0.0169;AF1=0.5005;AC1=1;DP4=0,1,0,2;MQ=60;FQ=3.02;PV4=1,1,1,0.33 GT:PL:GQ 0/1:66,0,27:30 chr2 17954421 . C G 73 . DP=10;VDB=0.0157;AF1=0.5;AC1=1;DP4=3,2,5,0;MQ=60;FQ=76;PV4=0.44,1,1,0.11 GT:PL:GQ 0/1:103,0,123:99 chr2 17959405 . Gtatatatatatatata GTAtatatatatatatata 59.2 . INDEL;DP=4;VDB=0.0110;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:98,6,0:10 chr2 17962450 . A G 100 . DP=78;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,18,15,26;MQ=60;FQ=103;PV4=0.26,2.8e-34,1,1 GT:PL:GQ 0/1:130,0,255:99 chr2 17962518 . C T 225 . DP=63;VDB=0.0393;AF1=0.5;AC1=1;DP4=26,9,16,12;MQ=60;FQ=225;PV4=0.18,1,0.13,0.48 GT:PL:GQ 0/1:255,0,255:99 chr2 17998025 . A T 101 . DP=35;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,15,6,9;MQ=59;FQ=104;PV4=0.28,5.4e-09,0.43,1 GT:PL:GQ 0/1:131,0,254:99 chr2 17998095 . C T 150 . DP=66;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,7,26,11;MQ=60;FQ=153;PV4=1,3.7e-20,1,0.068 GT:PL:GQ 0/1:180,0,255:99 chr2 17998331 . T C 183 . DP=110;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,34,18,39;MQ=60;FQ=186;PV4=1,1.1e-22,1,1 GT:PL:GQ 0/1:213,0,255:99 chr2 18112473 . G A 222 . DP=94;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,53,41;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 18113508 . G A 105 . DP=149;VDB=0.0393;AF1=0.5;AC1=1;DP4=43,42,34,26;MQ=60;FQ=108;PV4=0.5,1.1e-61,0.4,0.2 GT:PL:GQ 0/1:135,0,255:99 chr2 18113623 . A G 225 . DP=79;VDB=0.0393;AF1=0.5;AC1=1;DP4=12,27,9,24;MQ=59;FQ=225;PV4=0.8,1,0.061,0.37 GT:PL:GQ 0/1:255,0,255:99 chr2 18758287 . C T 10.4 . DP=9;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=13.2;PV4=1,0.00037,1,0.32 GT:PL:GQ 0/1:40,0,95:42 chr2 20113221 . A G 27 . DP=5;VDB=0.0196;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=30;PV4=1,0.42,1,0.16 GT:PL:GQ 0/1:57,0,86:60 chr2 20131079 . T C 88 . DP=95;VDB=0.0399;AF1=0.5;AC1=1;DP4=38,20,26,10;MQ=60;FQ=91;PV4=0.65,1.5e-36,0.37,1 GT:PL:GQ 0/1:118,0,255:99 chr2 20131184 . C A,T 83 . DP=56;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,4,44;MQ=60;FQ=-168 GT:PL:GQ 1/1:116,141,0,114,123,111:99 chr2 20133221 . C T 225 . DP=116;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,39,17,47;MQ=60;FQ=225;PV4=0.83,0.0017,0.19,0.22 GT:PL:GQ 0/1:255,0,255:99 chr2 20147974 . G A 15.1 . DP=6;VDB=0.0125;AF1=0.5;AC1=1;DP4=4,0,1,1;MQ=60;FQ=18.1;PV4=0.33,0.07,1,1 GT:PL:GQ 0/1:45,0,104:48 chr2 20173255 . A C 146 . DP=24;VDB=0.0081;AF1=0.5;AC1=1;DP4=9,1,14,0;MQ=60;FQ=148;PV4=0.42,0.22,1,0.44 GT:PL:GQ 0/1:176,0,180:99 chr2 20189089 . C T 136 . DP=91;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,44,6,33;MQ=60;FQ=139;PV4=0.76,1.7e-30,1,1 GT:PL:GQ 0/1:166,0,255:99 chr2 20233135 . T C 58.1 . DP=7;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:91,18,0:33 chr2 20302475 . aaggag aag 5.08 . INDEL;DP=42;VDB=0.0190;AF1=0.5;AC1=1;DP4=27,2,8,0;MQ=56;FQ=7.36;PV4=1,2.1e-05,4.5e-06,0.0003 GT:PL:GQ 0/1:41,0,255:41 chr2 20403794 . A T 222 . DP=52;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,28,20;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr2 20403949 . C T 90 . DP=43;VDB=0.0359;AF1=0.5;AC1=1;DP4=9,18,8,8;MQ=59;FQ=93;PV4=0.34,1e-13,1,0.12 GT:PL:GQ 0/1:120,0,255:99 chr2 20405050 . A C 16.6 . DP=4;VDB=0.0095;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:49,12,0:20 chr2 20423154 . A G 160 . DP=22;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,5,15;MQ=60;FQ=-87 GT:PL:GQ 1/1:193,60,0:99 chr2 20699625 . G A 3.41 . DP=2;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:32,6,0:4 chr2 20699667 . C G 3.54 . DP=4;VDB=0.0190;AF1=0.4998;AC1=1;DP4=2,0,2,0;MQ=60;FQ=5.46;PV4=1,0.018,1,0.0045 GT:PL:GQ 0/1:31,0,60:30 chr2 20699801 . C G 216 . DP=33;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,4,10,5;MQ=60;FQ=210;PV4=1,0.42,1,1 GT:PL:GQ 0/1:246,0,238:99 chr2 20700900 . A G 200 . DP=22;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,8,13;MQ=59;FQ=-90 GT:PL:GQ 1/1:233,63,0:99 chr2 20798006 . ct c 131 . INDEL;DP=16;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,1,4,3;MQ=60;FQ=134;PV4=0.28,1.1e-10,1,0.22 GT:PL:GQ 0/1:169,0,175:99 chr2 20798023 . C T 44 . DP=20;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,4,8,1;MQ=59;FQ=47;PV4=0.32,6.7e-05,1,1 GT:PL:GQ 0/1:74,0,217:77 chr2 20818454 . T A 134 . DP=43;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,11,13,5;MQ=59;FQ=137;PV4=0.35,2.4e-10,0.12,1 GT:PL:GQ 0/1:164,0,255:99 chr2 20818517 . T C 150 . DP=47;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,12,10,10;MQ=60;FQ=153;PV4=1,1.9e-10,1,1 GT:PL:GQ 0/1:180,0,255:99 chr2 20818551 . G C 101 . DP=46;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,13,12,9;MQ=60;FQ=104;PV4=0.35,5.1e-21,1,0.18 GT:PL:GQ 0/1:131,0,255:99 chr2 20818764 . C T 225 . DP=98;VDB=0.0380;AF1=0.5;AC1=1;DP4=36,18,16,23;MQ=60;FQ=225;PV4=0.02,0.16,1,0.18 GT:PL:GQ 0/1:255,0,255:99 chr2 20818840 . C T 225 . DP=110;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,35,24,21;MQ=60;FQ=225;PV4=0.24,0.34,0.42,0.11 GT:PL:GQ 0/1:255,0,255:99 chr2 20822218 . T C 156 . DP=9;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:189,27,0:51 chr2 20823612 . A G 12.3 . DP=5;VDB=0.0050;AF1=0.5;AC1=1;DP4=2,0,1,2;MQ=60;FQ=15;PV4=0.4,0.0019,1,1 GT:PL:GQ 0/1:42,0,56:44 chr2 20823724 . T C 132 . DP=11;VDB=0.0325;AF1=1;AC1=2;DP4=0,0,4,5;MQ=60;FQ=-54 GT:PL:GQ 1/1:165,27,0:51 chr2 20823850 . T C 95 . DP=9;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:128,24,0:45 chr2 20824498 . C T 222 . DP=16;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,8,8;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr2 20824691 . C T 65 . DP=25;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,13,4,6;MQ=60;FQ=68;PV4=0.18,2.4e-08,1,0.047 GT:PL:GQ 0/1:95,0,221:98 chr2 20838222 . C T 141 . DP=110;VDB=0.0399;AF1=0.5;AC1=1;DP4=27,28,29,25;MQ=59;FQ=144;PV4=0.7,2.5e-29,1,0.29 GT:PL:GQ 0/1:171,0,255:99 chr2 20841059 . C T 80 . DP=10;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,10;MQ=55;FQ=-57 GT:PL:GQ 1/1:113,30,0:57 chr2 20845273 . G A 85 . DP=19;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,1,16;MQ=59;FQ=-78 GT:PL:GQ 1/1:118,51,0:99 chr2 20870579 . G A 84.1 . DP=6;VDB=0.0284;AF1=1;AC1=2;DP4=0,0,2,4;MQ=60;FQ=-45 GT:PL:GQ 1/1:117,18,0:33 chr2 20871190 . A C 154 . DP=11;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:187,33,0:63 chr2 20884550 . C A 67 . DP=47;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,5,21,2;MQ=58;FQ=70;PV4=0.41,3.1e-20,0.28,1 GT:PL:GQ 0/1:97,0,255:99 chr2 21231524 . G A 222 . DP=125;VDB=0.0392;AF1=1;AC1=2;DP4=1,0,58,64;MQ=59;FQ=-282;PV4=0.48,0.017,1,0.22 GT:PL:GQ 1/1:255,255,0:99 chr2 21232803 . T C 222 . DP=75;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,49;MQ=59;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr2 21235475 . T C 222 . DP=31;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,11,19;MQ=58;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr2 21237544 . G A 95 . DP=17;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,17;MQ=59;FQ=-78 GT:PL:GQ 1/1:128,51,0:99 chr2 21250914 . G A 222 . DP=47;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,11,34;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr2 21252365 . gaggaaggaaggaaggaaggaaggaaggaa gaggaaggaaggaaggaaggaaggaa 22.2 . INDEL;DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:61,6,0:10 chr2 21255573 . C CCATCT 117 . INDEL;DP=7;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,5;MQ=44;FQ=-49.5 GT:PL:GQ 1/1:157,15,0:27 chr2 21258600 . C T 149 . DP=21;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,6,1,9;MQ=60;FQ=152;PV4=0.15,1,1,1 GT:PL:GQ 0/1:179,0,215:99 chr2 21360583 . A G 222 . DP=52;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,29,21;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr2 21364968 . T C 185 . DP=27;VDB=0.0384;AF1=0.5;AC1=1;DP4=1,11,2,12;MQ=60;FQ=162;PV4=1,0.13,1,0.5 GT:PL:GQ 0/1:215,0,189:99 chr2 23862187 . C G 172 . DP=31;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,6,25;MQ=59;FQ=-120 GT:PL:GQ 1/1:205,93,0:99 chr2 23865260 . T C 222 . DP=52;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,35;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr2 23865908 . G C 222 . DP=38;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,17,21;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr2 23914776 . G A 27 . DP=38;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,16,1,13;MQ=60;FQ=30;PV4=0.62,1.2e-16,1,1 GT:PL:GQ 0/1:57,0,255:60 chr2 23919375 . C T 26 . DP=4;VDB=0.0180;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=28.2;PV4=1,0.029,1,0.28 GT:PL:GQ 0/1:56,0,63:58 chr2 23925980 . T C 35 . DP=14;VDB=0.0053;AF1=0.5;AC1=1;DP4=4,0,9,0;MQ=60;FQ=38;PV4=1,1.8e-08,1,1 GT:PL:GQ 0/1:65,0,85:68 chr2 23926659 . T C 180 . DP=87;VDB=0.0365;AF1=0.5;AC1=1;DP4=24,21,21,17;MQ=60;FQ=183;PV4=1,9.3e-22,1,1 GT:PL:GQ 0/1:210,0,255:99 chr2 24009163 . A G 67 . DP=39;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,17,4,14;MQ=60;FQ=70;PV4=0.4,3.3e-23,1,1 GT:PL:GQ 0/1:97,0,242:99 chr2 24042550 . C T 56.1 . DP=6;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:89,18,0:33 chr2 24046426 . G A 20 . DP=9;VDB=0.0161;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=60;FQ=23;PV4=1,0.0015,1,1 GT:PL:GQ 0/1:50,0,114:53 chr2 24055058 . G C 222 . DP=175;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,80,91;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 24108652 . T C 222 . DP=126;VDB=0.0392;AF1=1;AC1=2;DP4=1,0,67,53;MQ=60;FQ=-282;PV4=1,5e-05,0.45,0.23 GT:PL:GQ 1/1:255,255,0:99 chr2 24194314 . C T 9.52 . DP=13;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,6,0,5;MQ=58;FQ=12.3;PV4=1,1e-06,0.13,1 GT:PL:GQ 0/1:39,0,164:41 chr2 24246175 . C T 75 . DP=30;VDB=0.0393;AF1=0.5;AC1=1;DP4=0,17,1,12;MQ=60;FQ=78;PV4=0.43,5e-05,1,1 GT:PL:GQ 0/1:105,0,156:99 chr2 24246679 . A G 11.3 . DP=19;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,11,0,8;MQ=60;FQ=14.2;PV4=1,1.4e-17,1,0.27 GT:PL:GQ 0/1:41,0,171:43 chr2 24255862 . C G 102 . DP=22;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,20;MQ=60;FQ=-90 GT:PL:GQ 1/1:135,63,0:99 chr2 24276736 . T C 128 . DP=47;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,4,19,7;MQ=60;FQ=131;PV4=1,3.7e-17,1,1 GT:PL:GQ 0/1:158,0,244:99 chr2 24290671 . G A 79 . DP=50;VDB=0.0398;AF1=0.5;AC1=1;DP4=21,12,9,6;MQ=60;FQ=82;PV4=1,7.1e-21,1,1 GT:PL:GQ 0/1:109,0,255:99 chr2 24369674 . C T 222 . DP=162;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,65,93;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 24384424 . T C 126 . DP=47;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,22,8;MQ=59;FQ=-117 GT:PL:GQ 1/1:159,90,0:99 chr2 24387178 . GC GCC 214 . INDEL;DP=32;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,7,25;MQ=60;FQ=-131 GT:PL:GQ 1/1:255,96,0:99 chr2 24388096 . G A 56.3 . DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:89,15,0:27 chr2 24390517 . G A 169 . DP=49;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,27;MQ=59;FQ=-153 GT:PL:GQ 1/1:202,126,0:99 chr2 24395506 . T C 222 . DP=18;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,2,16;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr2 24398281 . T G 134 . DP=23;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,19,3;MQ=60;FQ=-93 GT:PL:GQ 1/1:167,66,0:99 chr2 24398446 . A T 222 . DP=25;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,5,20;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr2 24402127 . C CAA 214 . INDEL;DP=18;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,7,11;MQ=59;FQ=-88.5 GT:PL:GQ 1/1:255,54,0:99 chr2 24432211 . C T 222 . DP=27;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,4,22;MQ=59;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr2 24432620 . A G 52 . DP=15;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,15,0;MQ=60;FQ=-72 GT:PL:GQ 1/1:85,45,0:86 chr2 24432667 . C G 150 . DP=44;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,33,8;MQ=60;FQ=-150 GT:PL:GQ 1/1:183,123,0:99 chr2 24440997 . A T 94 . DP=27;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,26;MQ=60;FQ=-105 GT:PL:GQ 1/1:127,78,0:99 chr2 24475205 . T C 210 . DP=96;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,84,10;MQ=60;FQ=-282 GT:PL:GQ 1/1:243,255,0:99 chr2 24484150 . T C 95 . DP=24;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,22;MQ=59;FQ=-96 GT:PL:GQ 1/1:128,69,0:99 chr2 24521493 . C T 176 . DP=32;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,5;MQ=58;FQ=-117 GT:PL:GQ 1/1:209,90,0:99 chr2 24521766 . C T 41.5 . DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:74,12,0:21 chr2 24896389 . T G 6.95 . DP=16;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:38,9,0:10 chr2 24905927 . G C 222 . DP=94;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,40,52;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 24933689 . A C 102 . DP=6;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:135,15,0:27 chr2 24952740 . c cT 125 . INDEL;DP=12;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,2,7;MQ=45;FQ=-61.5 GT:PL:GQ 1/1:166,27,0:51 chr2 24974945 . T G 209 . DP=26;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,10,14;MQ=60;FQ=-99 GT:PL:GQ 1/1:242,72,0:99 chr2 25039804 . G A 120 . DP=7;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:153,18,0:33 chr2 25040423 . G A 34.8 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:66,6,0:10 chr2 25046090 . T C 142 . DP=17;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,14,2;MQ=60;FQ=-75 GT:PL:GQ 1/1:175,48,0:93 chr2 25046355 . T C 22.5 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:55,12,0:21 chr2 25047408 . A G 222 . DP=60;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,18,40;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr2 25048847 . A G 62 . DP=45;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,41,0;MQ=59;FQ=-150 GT:PL:GQ 1/1:95,123,0:99 chr2 25050977 . T C 163 . DP=21;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,15;MQ=59;FQ=-87 GT:PL:GQ 1/1:196,60,0:99 chr2 25064193 . G A 80.1 . DP=7;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-45 GT:PL:GQ 1/1:113,18,0:33 chr2 25100738 . C A 222 . DP=19;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,3;MQ=59;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr2 25100902 . C G 109 . DP=15;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:142,45,0:87 chr2 25141538 . A G 181 . DP=167;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,92,67;MQ=59;FQ=-282 GT:PL:GQ 1/1:214,255,0:99 chr2 25181488 . T C 222 . DP=83;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,68,11;MQ=60;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr2 25458546 . C T 222 . DP=47;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,32,15;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr2 25466888 . G T 106 . DP=7;VDB=0.0343;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:139,15,0:27 chr2 25469913 . C T 222 . DP=56;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,49,6;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr2 25472784 . C T 115 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:148,18,0:33 chr2 25523196 . T C 17.1 . DP=4;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:49,9,0:15 chr2 25602142 . G A 78 . DP=80;VDB=0.0345;AF1=0.5;AC1=1;DP4=36,8,32,3;MQ=60;FQ=81;PV4=0.33,2.1e-31,1,0.46 GT:PL:GQ 0/1:108,0,255:99 chr2 25655772 . T C 112 . DP=14;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,1,5,4;MQ=60;FQ=62;PV4=1,0.0016,1,1 GT:PL:GQ 0/1:142,0,89:92 chr2 25656880 . C G 152 . DP=45;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,34;MQ=59;FQ=-144 GT:PL:GQ 1/1:185,117,0:99 chr2 25754235 . T C 6.98 . DP=4;VDB=0.0204;AF1=0.5003;AC1=1;DP4=1,0,3,0;MQ=60;FQ=3.67;PV4=1,0.0014,1,0.24 GT:PL:GQ 0/1:36,0,29:32 chr2 26082057 . T C 34 . DP=3;VDB=0.0220;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:66,9,0:16 chr2 26176947 . C A 13.2 . DP=3;VDB=0.0192;AF1=0.5004;AC1=1;DP4=1,0,2,0;MQ=60;FQ=3.47;PV4=1,0.061,1,1 GT:PL:GQ 0/1:43,0,28:31 chr2 26203678 . T C 212 . DP=80;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,40,35;MQ=60;FQ=-253 GT:PL:GQ 1/1:245,226,0:99 chr2 26204640 . G A 163 . DP=54;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,15,9,16;MQ=60;FQ=166;PV4=0.78,5.2e-13,1,1 GT:PL:GQ 0/1:193,0,255:99 chr2 26321526 . T C 171 . DP=22;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,14,7;MQ=60;FQ=-90 GT:PL:GQ 1/1:204,63,0:99 chr2 26350136 . G T 179 . DP=31;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,6,24;MQ=60;FQ=-117 GT:PL:GQ 1/1:212,90,0:99 chr2 26357748 . G T 202 . DP=54;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,45,8;MQ=60;FQ=-187 GT:PL:GQ 1/1:235,160,0:99 chr2 26399214 . G A 135 . DP=102;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,25,26,21;MQ=60;FQ=138;PV4=0.69,7.5e-30,1,1 GT:PL:GQ 0/1:165,0,255:99 chr2 26405985 . A G 67 . DP=21;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,9,3,6;MQ=60;FQ=70;PV4=0.62,5.8e-07,1,1 GT:PL:GQ 0/1:97,0,195:99 chr2 26407120 . A T 225 . DP=37;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,11,14,6;MQ=59;FQ=225;PV4=0.05,0.28,0.18,1 GT:PL:GQ 0/1:255,0,255:99 chr2 26408064 . T C 13 . DP=2;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr2 26415093 . A C 16.1 . DP=5;VDB=0.0049;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:48,9,0:15 chr2 26415429 . A G 23.1 . DP=7;VDB=0.0002;AF1=0.5064;AC1=1;DP4=0,1,0,6;MQ=60;FQ=-11.3;PV4=1,0.0011,1,1 GT:PL:GQ 0/1:53,0,16:19 chr2 26416301 . A G 38 . DP=16;VDB=0.0019;AF1=0.5;AC1=1;DP4=5,0,10,0;MQ=60;FQ=41;PV4=1,2.6e-06,1,0.21 GT:PL:GQ 0/1:68,0,99:71 chr2 26420708 . T G 225 . DP=35;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,13,5,14;MQ=60;FQ=214;PV4=0.7,0.12,1,0.12 GT:PL:GQ 0/1:255,0,241:99 chr2 26455002 . C G 38 . DP=13;VDB=0.0053;AF1=0.5;AC1=1;DP4=8,0,4,1;MQ=60;FQ=41;PV4=0.38,2.7e-05,1,0.24 GT:PL:GQ 0/1:68,0,149:71 chr2 26455127 . G A 225 . DP=53;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,15,14,10;MQ=60;FQ=225;PV4=0.4,0.13,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 26457267 . T G 95 . DP=8;VDB=0.0392;AF1=0.5001;AC1=1;DP4=0,2,0,6;MQ=57;FQ=8.65;PV4=1,1,0.3,1 GT:PL:GQ 0/1:125,0,35:38 chr2 26467347 . C A 93 . DP=19;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,1,9,2;MQ=60;FQ=92.5;PV4=1,0.00022,1,0.1 GT:PL:GQ 0/1:123,0,122:99 chr2 26477125 . GACTA GACTACTA 39.5 . INDEL;DP=4;VDB=0.0017;AF1=0.5;AC1=1;DP4=2,0,1,1;MQ=54;FQ=42.4;PV4=1,1,0.21,1 GT:PL:GQ 0/1:77,0,98:80 chr2 26501953 . C A 81 . DP=22;VDB=0.0019;AF1=0.5;AC1=1;DP4=10,0,10,1;MQ=59;FQ=84;PV4=1,3.5e-10,0.18,1 GT:PL:GQ 0/1:111,0,154:99 chr2 26505858 . A G 225 . DP=50;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,12,9,9;MQ=60;FQ=225;PV4=0.56,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 26507076 . A T 172 . DP=65;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,14,24,13;MQ=60;FQ=175;PV4=0.2,1.8e-15,1,1 GT:PL:GQ 0/1:202,0,255:99 chr2 26507724 . T C 104 . DP=33;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,7,12,3;MQ=60;FQ=107;PV4=0.25,3.6e-09,1,0.063 GT:PL:GQ 0/1:134,0,255:99 chr2 26512733 . T G 225 . DP=79;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,19,17,27;MQ=60;FQ=225;PV4=0.65,0.34,0.19,0.38 GT:PL:GQ 0/1:255,0,255:99 chr2 26512957 . G C 65 . DP=8;VDB=0.0161;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=65.9;PV4=1,0.35,1,0.3 GT:PL:GQ 0/1:95,0,97:96 chr2 26532491 . G T 51 . DP=30;VDB=0.0384;AF1=0.5;AC1=1;DP4=6,14,3,6;MQ=60;FQ=54;PV4=1,8.5e-08,1,1 GT:PL:GQ 0/1:81,0,255:84 chr2 26532735 . G A 48 . DP=19;VDB=0.0118;AF1=0.5;AC1=1;DP4=10,0,9,0;MQ=60;FQ=51;PV4=1,6.8e-14,1,0.46 GT:PL:GQ 0/1:78,0,163:81 chr2 26533023 . C T 225 . DP=83;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,17,22,19;MQ=60;FQ=225;PV4=0.83,0.48,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 26534087 . G A 138 . DP=61;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,11,26,9;MQ=59;FQ=141;PV4=0.082,2.1e-23,1,1 GT:PL:GQ 0/1:168,0,255:99 chr2 26534801 . G A 160 . DP=31;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,6,7,11;MQ=59;FQ=163;PV4=1,2.4e-08,0.22,1 GT:PL:GQ 0/1:190,0,211:99 chr2 26536299 . C G 94 . DP=53;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,9,22,8;MQ=60;FQ=97;PV4=0.23,1.6e-19,1,1 GT:PL:GQ 0/1:124,0,255:99 chr2 26536694 . C T 188 . DP=29;VDB=0.0140;AF1=0.5;AC1=1;DP4=11,2,14,2;MQ=60;FQ=187;PV4=1,0.091,1,1 GT:PL:GQ 0/1:218,0,217:99 chr2 26537499 . A C 216 . DP=61;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,9,49;MQ=60;FQ=-202 GT:PL:GQ 1/1:249,175,0:99 chr2 26541813 . T A 225 . DP=54;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,23,6,17;MQ=60;FQ=225;PV4=1,0.31,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 26587076 . G A 111 . DP=18;VDB=0.0066;AF1=0.5;AC1=1;DP4=8,2,8,0;MQ=59;FQ=114;PV4=0.48,1,1,0.39 GT:PL:GQ 0/1:141,0,194:99 chr2 26590084 . T G 225 . DP=50;VDB=0.0393;AF1=0.5;AC1=1;DP4=10,13,7,19;MQ=60;FQ=225;PV4=0.25,0.47,1,0.46 GT:PL:GQ 0/1:255,0,255:99 chr2 26590118 . C T 108 . DP=42;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,14,3,17;MQ=59;FQ=111;PV4=0.45,1.2e-18,1,1 GT:PL:GQ 0/1:138,0,255:99 chr2 26606154 . T C 134 . DP=26;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,4,8,6;MQ=58;FQ=137;PV4=1,1.8e-11,1,1 GT:PL:GQ 0/1:164,0,193:99 chr2 26607815 . T C 9.52 . DP=29;VDB=0.0190;AF1=0.5;AC1=1;DP4=13,2,6,2;MQ=60;FQ=12.3;PV4=0.59,4.4e-08,1,1 GT:PL:GQ 0/1:39,0,224:41 chr2 26607992 . T C 95 . DP=44;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,40;MQ=59;FQ=-153 GT:PL:GQ 1/1:128,126,0:99 chr2 26609469 . G A 116 . DP=25;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,8,3,13;MQ=60;FQ=119;PV4=1,1.4e-10,1,0.35 GT:PL:GQ 0/1:146,0,163:99 chr2 26647277 . T G 4.77 . DP=9;VDB=0.0211;AF1=0.4999;AC1=1;DP4=0,5,0,3;MQ=60;FQ=6.99;PV4=1,0.00014,1,1 GT:PL:GQ 0/1:33,0,117:33 chr2 26652671 . A G 6.2 . DP=14;VDB=0.0216;AF1=0.4999;AC1=1;DP4=1,6,0,7;MQ=60;FQ=8.65;PV4=1,7.1e-12,1,0.26 GT:PL:GQ 0/1:35,0,165:36 chr2 26667130 . A G 131 . DP=91;VDB=0.0298;AF1=0.5;AC1=1;DP4=32,21,27,10;MQ=60;FQ=134;PV4=0.26,7.6e-28,1,1 GT:PL:GQ 0/1:161,0,255:99 chr2 26667615 . T C 150 . DP=31;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,20,9;MQ=60;FQ=-114 GT:PL:GQ 1/1:183,87,0:99 chr2 26671544 . A G 225 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,3,6,8;MQ=60;FQ=129;PV4=0.66,1,1,1 GT:PL:GQ 0/1:255,0,156:99 chr2 26676322 . A G 186 . DP=40;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,19,21;MQ=60;FQ=-147 GT:PL:GQ 1/1:219,120,0:99 chr2 26676395 . G T 72 . DP=26;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,12,3,7;MQ=60;FQ=75;PV4=0.65,7.3e-11,1,0.49 GT:PL:GQ 0/1:102,0,239:99 chr2 26693967 . C T 115 . DP=71;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,11,17,16;MQ=60;FQ=118;PV4=0.15,2.3e-28,1,1 GT:PL:GQ 0/1:145,0,255:99 chr2 26698682 . G T 60.1 . DP=6;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:93,18,0:33 chr2 26699126 . C G 222 . DP=20;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,8,12;MQ=59;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr2 26699855 . G C 222 . DP=41;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,15,24;MQ=59;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr2 26700700 . G A 126 . DP=47;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,4,39;MQ=60;FQ=-156 GT:PL:GQ 1/1:159,129,0:99 chr2 26700819 . TGGGGG TGGG 121 . INDEL;DP=6;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:161,15,0:27 chr2 26702057 . GTT GT 44.4 . INDEL;DP=3;VDB=0.0089;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:84,9,0:16 chr2 26724442 . A G 95 . DP=12;VDB=0.0042;AF1=0.5;AC1=1;DP4=6,0,6,0;MQ=60;FQ=92.6;PV4=1,1,1,1 GT:PL:GQ 0/1:125,0,121:99 chr2 26724725 . T G 32.1 . DP=10;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:65,18,0:33 chr2 26726752 . G A 64 . DP=52;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,18,6,15;MQ=60;FQ=67;PV4=0.39,1.5e-21,1,0.24 GT:PL:GQ 0/1:94,0,255:97 chr2 26733500 . C T 56 . DP=10;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,10,0;MQ=58;FQ=-57 GT:PL:GQ 1/1:89,30,0:57 chr2 26733677 . G A 77 . DP=29;VDB=0.0343;AF1=0.5;AC1=1;DP4=5,13,2,9;MQ=60;FQ=80;PV4=0.68,3e-05,1,0.45 GT:PL:GQ 0/1:107,0,255:99 chr2 26739423 . T C 124 . DP=49;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,15,6,14;MQ=60;FQ=127;PV4=0.37,4.2e-11,1,1 GT:PL:GQ 0/1:154,0,255:99 chr2 26739526 . A G 57 . DP=3;VDB=0.0050;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:89,9,0:16 chr2 26750557 . T C 51.1 . DP=7;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,7,0;MQ=57;FQ=-48 GT:PL:GQ 1/1:84,21,0:39 chr2 26750645 . G A 117 . DP=74;VDB=0.0365;AF1=0.5;AC1=1;DP4=25,13,22,12;MQ=60;FQ=120;PV4=1,3.6e-28,1,0.3 GT:PL:GQ 0/1:147,0,255:99 chr2 26795235 . C T 7.59 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr2 26798893 . A T 222 . DP=172;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,74,93;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 26799031 . G A 128 . DP=28;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,3,23;MQ=60;FQ=-105 GT:PL:GQ 1/1:161,78,0:99 chr2 26800422 . G A 115 . DP=64;VDB=0.0399;AF1=0.5;AC1=1;DP4=20,16,14,12;MQ=60;FQ=118;PV4=1,1.3e-19,1,1 GT:PL:GQ 0/1:145,0,255:99 chr2 26801586 . G A 167 . DP=21;VDB=0.0118;AF1=0.5;AC1=1;DP4=7,0,12,1;MQ=60;FQ=102;PV4=1,0.12,1,0.13 GT:PL:GQ 0/1:197,0,129:99 chr2 26802392 . A T 225 . DP=38;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,13,5,14;MQ=59;FQ=225;PV4=1,1,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr2 26804143 . T C 102 . DP=24;VDB=0.0190;AF1=0.5;AC1=1;DP4=13,1,8,0;MQ=60;FQ=105;PV4=1,1,1,1 GT:PL:GQ 0/1:132,0,204:99 chr2 26804218 . G A 222 . DP=41;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,22,19;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr2 26804247 . T C 225 . DP=51;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,15,14,11;MQ=60;FQ=225;PV4=0.41,1,0.16,0.062 GT:PL:GQ 0/1:255,0,255:99 chr2 26818006 . T C 89.5 . DP=32;VDB=0.0365;AF1=1;AC1=2;DP4=1,1,12,10;MQ=59;FQ=-39;PV4=1,2.1e-05,0.39,0.27 GT:PL:GQ 1/1:122,12,0:21 chr2 26818021 . C T 134 . DP=36;VDB=0.0322;AF1=1;AC1=2;DP4=1,1,22,11;MQ=59;FQ=-67;PV4=1,7.1e-05,0.36,1 GT:PL:GQ 1/1:167,40,0:77 chr2 26846282 . T C 47 . DP=34;VDB=0.0053;AF1=0.5;AC1=1;DP4=13,1,17,2;MQ=60;FQ=50;PV4=1,3.2e-17,1,0.47 GT:PL:GQ 0/1:77,0,195:80 chr2 26951449 . G A 56.3 . DP=5;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:89,15,0:27 chr2 26997031 . G A 107 . DP=59;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,10,25,5;MQ=60;FQ=110;PV4=0.13,2.5e-17,1,0.39 GT:PL:GQ 0/1:137,0,255:99 chr2 27014980 . T C 103 . DP=63;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,21,15,13;MQ=60;FQ=106;PV4=0.32,1.2e-27,1,1 GT:PL:GQ 0/1:133,0,255:99 chr2 27015118 . G A 95 . DP=24;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,9,3,11;MQ=60;FQ=97.9;PV4=0.25,1.1e-09,1,1 GT:PL:GQ 0/1:125,0,140:99 chr2 27015141 . GCC GCCC 141 . INDEL;DP=15;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,4,1,8;MQ=60;FQ=31.5;PV4=1,1,1,1 GT:PL:GQ 0/1:179,0,66:69 chr2 27015610 . CCAC CC 217 . INDEL;DP=95;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,29,17,20;MQ=59;FQ=217;PV4=1,0.0001,0.059,0.021 GT:PL:GQ 0/1:255,0,255:99 chr2 27015903 . T C 179 . DP=26;VDB=0.0164;AF1=0.5;AC1=1;DP4=8,2,14,1;MQ=59;FQ=158;PV4=0.54,1,1,0.35 GT:PL:GQ 0/1:209,0,185:99 chr2 27015969 . G A 225 . DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,6,21,8;MQ=59;FQ=212;PV4=0.52,0.11,1,0.38 GT:PL:GQ 0/1:255,0,239:99 chr2 27163044 . T C 147 . DP=20;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,9,1,10;MQ=60;FQ=96;PV4=1,1,1,1 GT:PL:GQ 0/1:177,0,123:99 chr2 27164806 . G A 133 . DP=8;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,1,4,2;MQ=60;FQ=22;PV4=1,1,1,1 GT:PL:GQ 0/1:163,0,49:52 chr2 27167784 . C T 17.1 . DP=5;VDB=0.0011;AF1=0.5032;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-8.63;PV4=1,0.013,1,1 GT:PL:GQ 0/1:47,0,19:22 chr2 27169637 . tc t 125 . INDEL;DP=13;VDB=0.0025;AF1=0.5;AC1=1;DP4=4,1,7,1;MQ=60;FQ=94.5;PV4=1,6.1e-09,1,0.42 GT:PL:GQ 0/1:163,0,129:99 chr2 27169842 . C A 100 . DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,16,2,21;MQ=60;FQ=103;PV4=0.012,3.2e-10,0.14,1 GT:PL:GQ 0/1:130,0,255:99 chr2 27246285 . C T 222 . DP=43;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,22,21;MQ=59;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr2 27249245 . A G 186 . DP=110;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,36,15,42;MQ=60;FQ=189;PV4=1,6.1e-24,1,1 GT:PL:GQ 0/1:216,0,255:99 chr2 27259794 . G A 10.4 . DP=14;VDB=0.0118;AF1=0.5;AC1=1;DP4=6,3,4,0;MQ=60;FQ=13.2;PV4=0.5,7.9e-08,1,1 GT:PL:GQ 0/1:40,0,216:42 chr2 27260469 . G A 116 . DP=60;VDB=0.0398;AF1=0.5;AC1=1;DP4=11,18,15,15;MQ=60;FQ=119;PV4=0.43,1.4e-27,1,0.15 GT:PL:GQ 0/1:146,0,255:99 chr2 27261329 . A G 71 . DP=13;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:104,39,0:75 chr2 27262763 . GGGAGGAGG GGGAGG 214 . INDEL;DP=53;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,2,46;MQ=50;FQ=-179 GT:PL:GQ 1/1:255,144,0:99 chr2 27263122 . T C 164 . DP=84;VDB=0.0345;AF1=0.5;AC1=1;DP4=29,9,35,11;MQ=60;FQ=167;PV4=1,2.7e-33,1,0.29 GT:PL:GQ 0/1:194,0,255:99 chr2 27276166 . C G 65 . DP=29;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,6,5,4;MQ=60;FQ=68;PV4=0.68,1.5e-11,1,1 GT:PL:GQ 0/1:95,0,255:98 chr2 27276202 . G A 125 . DP=32;VDB=0.0066;AF1=0.5;AC1=1;DP4=9,4,15,4;MQ=59;FQ=128;PV4=0.68,1.4e-06,0.21,1 GT:PL:GQ 0/1:155,0,218:99 chr2 27279416 . A G 222 . DP=72;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,55,13;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr2 27280092 . T A 49 . DP=21;VDB=0.0393;AF1=0.5;AC1=1;DP4=8,3,7,1;MQ=59;FQ=52;PV4=0.6,0.00014,1,1 GT:PL:GQ 0/1:79,0,203:82 chr2 27280127 . G A 104 . DP=36;VDB=0.0384;AF1=0.5;AC1=1;DP4=12,3,17,2;MQ=59;FQ=107;PV4=0.63,2.8e-11,1,0.23 GT:PL:GQ 0/1:134,0,230:99 chr2 27290525 . A G 225 . DP=92;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,33,16,20;MQ=60;FQ=225;PV4=0.83,1,0.11,1 GT:PL:GQ 0/1:255,0,255:99 chr2 27291661 . G A 7.8 . DP=12;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,6,1,4;MQ=60;FQ=10.4;PV4=1,8.2e-08,1,0.39 GT:PL:GQ 0/1:37,0,159:39 chr2 27293150 . G T 189 . DP=41;VDB=0.0393;AF1=0.5;AC1=1;DP4=4,17,4,15;MQ=59;FQ=192;PV4=1,0.00068,0.15,0.31 GT:PL:GQ 0/1:219,0,255:99 chr2 27302165 . T C 106 . DP=23;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,8,3,12;MQ=59;FQ=90;PV4=0.53,3.5e-08,0.24,1 GT:PL:GQ 0/1:136,0,117:99 chr2 27303755 . A G 166 . DP=35;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,2,30;MQ=60;FQ=-123 GT:PL:GQ 1/1:199,96,0:99 chr2 27307769 . G C 98 . DP=52;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,16,13,8;MQ=60;FQ=101;PV4=0.26,1e-18,1,0.046 GT:PL:GQ 0/1:128,0,255:99 chr2 27315252 . G A 225 . DP=85;VDB=0.0345;AF1=0.5;AC1=1;DP4=26,24,22,13;MQ=60;FQ=225;PV4=0.38,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 27319826 . A G 26.3 . DP=7;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:59,15,0:27 chr2 27323385 . C T 152 . DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,8,14,10;MQ=60;FQ=155;PV4=0.77,6e-14,1,0.46 GT:PL:GQ 0/1:182,0,255:99 chr2 27323468 . A C 178 . DP=46;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,16,28;MQ=60;FQ=-159 GT:PL:GQ 1/1:211,132,0:99 chr2 27324724 . G C 149 . DP=76;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,15,21,15;MQ=59;FQ=152;PV4=1,1.9e-23,1,1 GT:PL:GQ 0/1:179,0,255:99 chr2 27324751 . G T 225 . DP=88;VDB=0.0399;AF1=0.5;AC1=1;DP4=23,18,26,18;MQ=60;FQ=225;PV4=0.83,0.0053,1,0.35 GT:PL:GQ 0/1:255,0,255:99 chr2 27351948 . T G 222 . DP=84;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,27,46;MQ=60;FQ=-221;PV4=0.38,1,1,0.27 GT:PL:GQ 1/1:255,194,0:99 chr2 27354173 . C A 134 . DP=7;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:167,21,0:39 chr2 27355454 . A C 62.1 . DP=9;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-48 GT:PL:GQ 1/1:95,21,0:39 chr2 27359887 . C T 38 . DP=10;VDB=0.0081;AF1=0.5;AC1=1;DP4=4,0,4,1;MQ=60;FQ=41;PV4=1,0.00016,1,1 GT:PL:GQ 0/1:68,0,97:71 chr2 27423913 . G A 60 . DP=54;VDB=0.0216;AF1=0.5;AC1=1;DP4=13,16,7,14;MQ=60;FQ=63;PV4=0.56,6.9e-26,1,1 GT:PL:GQ 0/1:90,0,255:93 chr2 27424454 . C T 53 . DP=11;VDB=0.0066;AF1=0.5;AC1=1;DP4=4,1,3,3;MQ=60;FQ=56;PV4=0.55,0.00033,1,1 GT:PL:GQ 0/1:83,0,116:86 chr2 27424496 . G A 37 . DP=24;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,3,8,1;MQ=59;FQ=40;PV4=0.62,1.5e-09,0.12,1 GT:PL:GQ 0/1:67,0,227:70 chr2 27424636 . G A 139 . DP=80;VDB=0.0398;AF1=0.5;AC1=1;DP4=19,16,24,17;MQ=60;FQ=142;PV4=0.82,6.7e-29,0.18,0.18 GT:PL:GQ 0/1:169,0,255:99 chr2 27426514 . G C 181 . DP=58;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,48,5;MQ=60;FQ=-187 GT:PL:GQ 1/1:214,160,0:99 chr2 27428147 . A G 90 . DP=16;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,14,0;MQ=58;FQ=-69 GT:PL:GQ 1/1:123,42,0:81 chr2 27428173 . C T 203 . DP=33;VDB=0.0019;AF1=0.5;AC1=1;DP4=13,2,14,3;MQ=59;FQ=190;PV4=1,0.02,1,1 GT:PL:GQ 0/1:233,0,217:99 chr2 27428295 . A G 222 . DP=97;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,43,46;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 27428702 . A C 14.2 . DP=6;VDB=0.0040;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=17.1;PV4=1,0.00091,1,1 GT:PL:GQ 0/1:44,0,79:47 chr2 27428815 . C G 225 . DP=87;VDB=0.0216;AF1=0.5;AC1=1;DP4=36,13,26,9;MQ=59;FQ=225;PV4=1,0.033,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 27428877 . C G 88 . DP=102;VDB=0.0399;AF1=0.5;AC1=1;DP4=25,35,15,20;MQ=59;FQ=91;PV4=1,6.8e-33,1,0.093 GT:PL:GQ 0/1:118,0,255:99 chr2 27430237 . T C 156 . DP=104;VDB=0.0322;AF1=0.5;AC1=1;DP4=36,15,37,11;MQ=60;FQ=159;PV4=0.5,1.5e-27,1,0.49 GT:PL:GQ 0/1:186,0,255:99 chr2 27435250 . A G 203 . DP=23;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,16,7;MQ=60;FQ=-96 GT:PL:GQ 1/1:236,69,0:99 chr2 27435374 . G A 133 . DP=31;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,13,5,6;MQ=59;FQ=136;PV4=0.71,0.033,1,0.26 GT:PL:GQ 0/1:163,0,255:99 chr2 27439518 . A G 225 . DP=100;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,34,15,32;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 27439751 . G T 177 . DP=34;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,15,7,5;MQ=59;FQ=180;PV4=0.16,1,1,1 GT:PL:GQ 0/1:207,0,255:99 chr2 27440722 . C T 79 . DP=25;VDB=0.0066;AF1=0.5;AC1=1;DP4=11,1,11,2;MQ=60;FQ=82;PV4=1,3.4e-10,1,1 GT:PL:GQ 0/1:109,0,181:99 chr2 27440785 . C T 222 . DP=71;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,54,13;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr2 27441018 . C G 59 . DP=4;VDB=0.0149;AF1=0.5003;AC1=1;DP4=0,1,0,3;MQ=60;FQ=4.13;PV4=1,0.33,1,1 GT:PL:GQ 0/1:89,0,29:32 chr2 27444024 . G A 58 . DP=33;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,6,11,2;MQ=59;FQ=61;PV4=0.43,3.5e-14,1,0.46 GT:PL:GQ 0/1:88,0,255:91 chr2 27445518 . A G 109 . DP=32;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,11,3,15;MQ=60;FQ=112;PV4=1,4.6e-09,1,1 GT:PL:GQ 0/1:139,0,216:99 chr2 27449293 . C G 225 . DP=43;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,9,8,12;MQ=59;FQ=225;PV4=0.35,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 27455281 . C T 34 . DP=9;VDB=0.0033;AF1=0.5;AC1=1;DP4=3,1,4,1;MQ=60;FQ=37;PV4=1,0.0009,1,1 GT:PL:GQ 0/1:64,0,96:67 chr2 27458606 . A G 168 . DP=25;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,11,2,9;MQ=59;FQ=132;PV4=0.59,1,0.15,0.15 GT:PL:GQ 0/1:198,0,159:99 chr2 27460787 . G C 225 . DP=56;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,25,6,16;MQ=60;FQ=225;PV4=1,0.39,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 27460968 . A G 173 . DP=115;VDB=0.0400;AF1=0.5;AC1=1;DP4=25,30,21,34;MQ=59;FQ=176;PV4=0.56,1.3e-26,1,0.23 GT:PL:GQ 0/1:203,0,255:99 chr2 27462651 . T C 148 . DP=77;VDB=0.0384;AF1=0.5;AC1=1;DP4=19,22,13,19;MQ=60;FQ=151;PV4=0.64,1.4e-24,1,1 GT:PL:GQ 0/1:178,0,255:99 chr2 27463351 . C T 180 . DP=127;VDB=0.0399;AF1=0.5;AC1=1;DP4=31,31,34,29;MQ=60;FQ=183;PV4=0.72,2.9e-36,0.16,0.23 GT:PL:GQ 0/1:210,0,255:99 chr2 27465881 . G T 65 . DP=10;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,2,2,4;MQ=60;FQ=67.6;PV4=1,5e-05,1,1 GT:PL:GQ 0/1:95,0,105:98 chr2 27528692 . T C 34 . DP=6;VDB=0.0049;AF1=0.5;AC1=1;DP4=0,2,3,1;MQ=60;FQ=24.8;PV4=0.4,0.014,1,1 GT:PL:GQ 0/1:64,0,52:55 chr2 27535311 . TGG TGGG 214 . INDEL;DP=101;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,62,36;MQ=60;FQ=-290 GT:PL:GQ 1/1:255,255,0:99 chr2 27556721 . G A 176 . DP=55;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,11,16,13;MQ=60;FQ=179;PV4=1,3.3e-19,1,1 GT:PL:GQ 0/1:206,0,255:99 chr2 27591708 . G A 39 . DP=11;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,4,1,5;MQ=60;FQ=42;PV4=1,1.1e-08,1,0.04 GT:PL:GQ 0/1:69,0,99:72 chr2 27597338 . C A 83 . DP=10;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,5,1,4;MQ=60;FQ=79;PV4=1,0.23,1,1 GT:PL:GQ 0/1:113,0,107:99 chr2 27598097 . T C 54 . DP=8;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:87,24,0:45 chr2 27606098 . A G 36 . DP=10;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:69,27,0:50 chr2 27609212 . T C 80 . DP=27;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,11,4,8;MQ=60;FQ=83;PV4=0.67,2.6e-08,1,0.42 GT:PL:GQ 0/1:110,0,229:99 chr2 27656822 . GA GAA 217 . INDEL;DP=68;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,18,18,12;MQ=60;FQ=217;PV4=0.62,1,1,0.3 GT:PL:GQ 0/1:255,0,255:99 chr2 27685388 . G A 30 . DP=8;VDB=0.0003;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=60;FQ=32.8;PV4=1,0.00092,1,0.19 GT:PL:GQ 0/1:60,0,74:63 chr2 27712408 . C T 129 . DP=36;VDB=0.0343;AF1=0.5;AC1=1;DP4=9,12,10,5;MQ=59;FQ=132;PV4=0.19,7.5e-06,0.12,0.11 GT:PL:GQ 0/1:159,0,255:99 chr2 27720385 . C T 142 . DP=32;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,4,12,7;MQ=60;FQ=145;PV4=1,1.4e-07,1,0.3 GT:PL:GQ 0/1:172,0,215:99 chr2 27721469 . G A 77 . DP=29;VDB=0.0081;AF1=0.5;AC1=1;DP4=9,4,10,5;MQ=60;FQ=80;PV4=1,6.8e-11,1,1 GT:PL:GQ 0/1:107,0,228:99 chr2 27730817 . G A 87 . DP=23;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,3,7,3;MQ=59;FQ=90;PV4=1,5.1e-09,1,1 GT:PL:GQ 0/1:117,0,232:99 chr2 27730940 . T C 222 . DP=52;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,31,16;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr2 27731212 . T C 8.64 . DP=7;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=11.3;PV4=1,0.0039,1,1 GT:PL:GQ 0/1:38,0,71:40 chr2 27789861 . T A 222 . DP=146;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,60,77;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 27801403 . C G 222 . DP=176;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,90,84;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 27801418 . C A 222 . DP=177;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,83,88;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 27802805 . A G 222 . DP=52;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,33;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr2 27803089 . T C 100 . DP=59;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,21,10,13;MQ=60;FQ=103;PV4=1,1.8e-22,1,1 GT:PL:GQ 0/1:130,0,255:99 chr2 27804432 . T C 174 . DP=70;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,41,28;MQ=60;FQ=-235 GT:PL:GQ 1/1:207,208,0:99 chr2 27824168 . G C 222 . DP=168;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,110,51;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 27830990 . G T 153 . DP=19;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,4,15;MQ=60;FQ=-84 GT:PL:GQ 1/1:186,57,0:99 chr2 27838058 . C A 214 . DP=90;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,35,47;MQ=60;FQ=-274 GT:PL:GQ 1/1:247,247,0:99 chr2 27839107 . T C 222 . DP=40;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,22,18;MQ=60;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr2 27852117 . A AGGTCTT 214 . INDEL;DP=51;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,25;MQ=31;FQ=-152 GT:PL:GQ 1/1:255,117,0:99 chr2 27852150 . CGGGGG CGGGGGG 35.5 . INDEL;DP=39;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,1,5,2;MQ=56;FQ=22.4;PV4=1,1,1,0.47 GT:PL:GQ 0/1:73,0,57:60 chr2 27855397 . A T 197 . DP=28;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,17,10;MQ=59;FQ=-108 GT:PL:GQ 1/1:230,81,0:99 chr2 27857992 . T A 136 . DP=103;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,67,30;MQ=58;FQ=-282 GT:PL:GQ 1/1:169,255,0:99 chr2 27930837 . C T 127 . DP=52;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,23,5,18;MQ=60;FQ=130;PV4=0.71,3.6e-08,1,0.094 GT:PL:GQ 0/1:157,0,238:99 chr2 28065875 . C G 210 . DP=13;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:243,39,0:75 chr2 28069713 . T G 14.9 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:46,6,0:10 chr2 28236120 . C T 208 . DP=113;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,76,30;MQ=60;FQ=-282 GT:PL:GQ 1/1:241,255,0:99 chr2 28615812 . ggagagagagagagagagagag ggagagagagagagagagag 10.8 . INDEL;DP=21;VDB=0.0380;AF1=0.5;AC1=1;DP4=0,9,0,2;MQ=58;FQ=13.7;PV4=1,4.6e-06,1,1 GT:PL:GQ 0/1:48,0,224:50 chr2 28634790 . G A 130 . DP=32;VDB=0.0190;AF1=0.5;AC1=1;DP4=14,7,9,1;MQ=60;FQ=133;PV4=0.22,1,1,1 GT:PL:GQ 0/1:160,0,255:99 chr2 28718897 . A G 219 . DP=39;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,11;MQ=60;FQ=-144 GT:PL:GQ 1/1:252,117,0:99 chr2 28748857 . T C 150 . DP=33;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,17;MQ=60;FQ=-120 GT:PL:GQ 1/1:183,93,0:99 chr2 28748916 . A C 91 . DP=28;VDB=0.0393;AF1=0.5;AC1=1;DP4=4,11,3,10;MQ=60;FQ=94;PV4=1,9.4e-07,1,0.14 GT:PL:GQ 0/1:121,0,246:99 chr2 28752498 . T C 222 . DP=68;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,46,15;MQ=60;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr2 28752555 . T C 222 . DP=130;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,74,48;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 28752727 . C G 84 . DP=22;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,22;MQ=59;FQ=-93 GT:PL:GQ 1/1:117,66,0:99 chr2 28752741 . A G 158 . DP=13;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:191,33,0:63 chr2 28761257 . A G 28.8 . DP=2;VDB=0.0063;AF1=1;AC1=2;DP4=0,0,0,2;MQ=47;FQ=-33 GT:PL:GQ 1/1:60,6,0:10 chr2 28763374 . G T 123 . DP=32;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,9,5,10;MQ=60;FQ=126;PV4=0.49,7.5e-12,1,1 GT:PL:GQ 0/1:153,0,255:99 chr2 28771452 . CTATATATATATATATA CTATATATATATATA 214 . INDEL;DP=8;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,3,5;MQ=60;FQ=-58.5 GT:PL:GQ 1/1:255,24,0:45 chr2 28771624 . T G 222 . DP=51;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,35,13;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr2 28785754 . G C 15.9 . DP=3;VDB=0.0125;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:47,6,0:10 chr2 28795962 . G A 34.5 . DP=4;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:67,12,0:21 chr2 28802355 . G C 24 . DP=13;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,1,5,0;MQ=60;FQ=27;PV4=1,4.5e-09,1,0.072 GT:PL:GQ 0/1:54,0,171:57 chr2 28802473 . C G 218 . DP=34;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,8,12,4;MQ=60;FQ=220;PV4=0.28,0.39,1,1 GT:PL:GQ 0/1:248,0,255:99 chr2 28805410 . C A 72 . DP=26;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,10,6,4;MQ=60;FQ=75;PV4=0.42,2.1e-11,1,0.31 GT:PL:GQ 0/1:102,0,255:99 chr2 28805465 . G A 49 . DP=14;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,5,1,6;MQ=60;FQ=52;PV4=1,6.5e-07,1,1 GT:PL:GQ 0/1:79,0,162:82 chr2 28812285 . T C 85 . DP=40;VDB=0.0033;AF1=0.5;AC1=1;DP4=18,1,20,1;MQ=60;FQ=88;PV4=1,1.1e-17,1,1 GT:PL:GQ 0/1:115,0,205:99 chr2 28812982 . C T 108 . DP=31;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,9,2,12;MQ=60;FQ=111;PV4=0.21,9.7e-06,1,1 GT:PL:GQ 0/1:138,0,253:99 chr2 28814460 . T A 49 . DP=10;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,1,6,0;MQ=60;FQ=41.6;PV4=0.33,0.0099,1,0.35 GT:PL:GQ 0/1:79,0,69:72 chr2 28816425 . T C 3.98 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr2 28816814 . CTTTTTTTTTTTTTT CTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTT 3.29 . INDEL;DP=57;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,14,4;MQ=56;FQ=-54.5;PV4=1,1,0.34,1 GT:PL:GQ 1/1:75,54,34,39,0,31,79,37,31,69:18 chr2 28816948 . C T 222 . DP=124;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,47,72;MQ=58;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 28821613 . C T 82 . DP=40;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,18,4,12;MQ=60;FQ=85;PV4=1,1.7e-12,1,0.12 GT:PL:GQ 0/1:112,0,255:99 chr2 28821662 . C T 203 . DP=15;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:236,45,0:87 chr2 28824793 . C G 222 . DP=55;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,17,36;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr2 28825607 . G A 54 . DP=42;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,5,8,6;MQ=60;FQ=57;PV4=0.27,1e-11,1,0.14 GT:PL:GQ 0/1:84,0,255:87 chr2 28827026 . T C 225 . DP=56;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,18,7,18;MQ=60;FQ=225;PV4=0.57,0.1,1,0.055 GT:PL:GQ 0/1:255,0,255:99 chr2 28827625 . C T 225 . DP=48;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,17,9,11;MQ=59;FQ=225;PV4=0.55,0.27,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 28827644 . A G 225 . DP=41;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,19,6,12;MQ=59;FQ=211;PV4=0.25,1,1,0.13 GT:PL:GQ 0/1:255,0,238:99 chr2 28843871 . G C 70 . DP=26;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,14,1,9;MQ=60;FQ=73;PV4=1,1.3e-07,1,1 GT:PL:GQ 0/1:100,0,232:99 chr2 28843909 . G A 38 . DP=12;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,6,1,4;MQ=60;FQ=41;PV4=0.45,4.3e-10,1,0.34 GT:PL:GQ 0/1:68,0,134:71 chr2 28847806 . C G 151 . DP=99;VDB=0.0365;AF1=0.5;AC1=1;DP4=37,15,34,11;MQ=60;FQ=154;PV4=0.65,5.7e-29,0.46,1 GT:PL:GQ 0/1:181,0,255:99 chr2 28853352 . C T 8.65 . DP=5;VDB=0.0008;AF1=0.5003;AC1=1;DP4=1,0,3,0;MQ=60;FQ=3.82;PV4=1,0.00049,1,0.051 GT:PL:GQ 0/1:38,0,29:32 chr2 28853377 . T C 101 . DP=11;VDB=0.0019;AF1=0.5;AC1=1;DP4=4,0,7,0;MQ=60;FQ=64;PV4=1,0.23,1,1 GT:PL:GQ 0/1:131,0,91:94 chr2 28855918 . AGG AGGG 214 . INDEL;DP=56;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,20,35;MQ=60;FQ=-201 GT:PL:GQ 1/1:255,166,0:99 chr2 28865760 . T C 136 . DP=60;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,25,8,14;MQ=60;FQ=139;PV4=1,1.8e-11,1,1 GT:PL:GQ 0/1:166,0,255:99 chr2 28975107 . G C 3.01 . DP=8;VDB=0.0177;AF1=0.4997;AC1=1;DP4=1,4,0,3;MQ=60;FQ=4.77;PV4=1,0.0011,1,1 GT:PL:GQ 0/1:30,0,123:28 chr2 29045323 . C T 222 . DP=20;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,13;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr2 29052256 . T C 89.5 . DP=6;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:122,12,0:21 chr2 29087814 . C A 107 . DP=20;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,18,1;MQ=60;FQ=-84 GT:PL:GQ 1/1:140,57,0:99 chr2 29092679 . T C 211 . DP=57;VDB=0.0365;AF1=1;AC1=2;DP4=0,1,30,22;MQ=60;FQ=-154;PV4=0.43,0.0028,0.45,0.25 GT:PL:GQ 1/1:244,127,0:99 chr2 29092850 . G T 203 . DP=84;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,36,37;MQ=59;FQ=-222;PV4=1,0.059,1,1 GT:PL:GQ 1/1:236,195,0:99 chr2 29129418 . A G 222 . DP=97;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,27,60;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 29135468 . C G 184 . DP=80;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,46,30;MQ=60;FQ=-256 GT:PL:GQ 1/1:217,229,0:99 chr2 29136489 . G T 167 . DP=34;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,25,4;MQ=60;FQ=-114 GT:PL:GQ 1/1:200,87,0:99 chr2 29136623 . T C 222 . DP=38;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,8,30;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr2 29136653 . T C 208 . DP=35;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,8,27;MQ=60;FQ=-132 GT:PL:GQ 1/1:241,105,0:99 chr2 29136685 . C T 222 . DP=24;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,17;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr2 29140711 . G A 117 . DP=103;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,49,51;MQ=60;FQ=-282 GT:PL:GQ 1/1:150,255,0:99 chr2 29145725 . G T 158 . DP=29;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,18,11;MQ=60;FQ=-114 GT:PL:GQ 1/1:191,87,0:99 chr2 29161010 . G A 44.3 . DP=5;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:77,15,0:27 chr2 29169612 . T C 199 . DP=68;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,26,38;MQ=60;FQ=-220 GT:PL:GQ 1/1:232,193,0:99 chr2 29222070 . G A 95 . DP=28;VDB=0.0216;AF1=0.5;AC1=1;DP4=12,3,6,5;MQ=60;FQ=98;PV4=0.22,0.00015,1,1 GT:PL:GQ 0/1:125,0,220:99 chr2 29226498 . G A 222 . DP=70;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,14,52;MQ=59;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr2 29226512 . A G 163 . DP=54;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,8,44;MQ=59;FQ=-184 GT:PL:GQ 1/1:196,157,0:99 chr2 29226559 . C T 83 . DP=22;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,20;MQ=59;FQ=-87 GT:PL:GQ 1/1:116,60,0:99 chr2 29239942 . T G 82 . DP=60;VDB=0.0164;AF1=0.5;AC1=1;DP4=30,10,16,4;MQ=60;FQ=85;PV4=0.76,2.4e-12,0.08,1 GT:PL:GQ 0/1:112,0,255:99 chr2 29240005 . T C 115 . DP=92;VDB=0.0322;AF1=0.5;AC1=1;DP4=23,18,20,30;MQ=59;FQ=118;PV4=0.14,3.6e-36,0.34,1 GT:PL:GQ 0/1:145,0,255:99 chr2 29240060 . A G 137 . DP=65;VDB=0.0216;AF1=0.5;AC1=1;DP4=8,25,8,22;MQ=59;FQ=140;PV4=1,3.5e-24,1,1 GT:PL:GQ 0/1:167,0,255:99 chr2 29240582 . T C 76 . DP=26;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,0,8,3;MQ=60;FQ=79;PV4=0.072,9.8e-07,1,1 GT:PL:GQ 0/1:106,0,154:99 chr2 29240673 . G A 64 . DP=47;VDB=0.0244;AF1=0.5;AC1=1;DP4=16,14,8,8;MQ=60;FQ=67;PV4=1,2.8e-14,1,1 GT:PL:GQ 0/1:94,0,255:97 chr2 29240686 . A C 77 . DP=46;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,15,8,8;MQ=60;FQ=80;PV4=0.76,2e-13,1,1 GT:PL:GQ 0/1:107,0,255:99 chr2 29240783 . A G 164 . DP=30;VDB=0.0384;AF1=0.5;AC1=1;DP4=3,13,7,7;MQ=60;FQ=167;PV4=0.12,0.029,1,0.43 GT:PL:GQ 0/1:194,0,223:99 chr2 29247304 . C T 85 . DP=26;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,12,2,12;MQ=60;FQ=88;PV4=0.48,6.6e-07,1,0.15 GT:PL:GQ 0/1:115,0,155:99 chr2 29287926 . CGCTGCTGCTGC CGCTGCTGCTGCTGC 214 . INDEL;DP=17;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,10,7;MQ=60;FQ=-85.5 GT:PL:GQ 1/1:255,51,0:99 chr2 29294629 . C T 222 . DP=65;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,26,32;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr2 29294754 . G C 222 . DP=31;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,12;MQ=59;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr2 29295016 . A G 222 . DP=69;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,28,39;MQ=59;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr2 29295676 . G A 222 . DP=64;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,33,25;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr2 29296870 . C T 134 . DP=86;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,42,39;MQ=59;FQ=-245;PV4=0.49,0.00012,1,0.22 GT:PL:GQ 1/1:167,218,0:99 chr2 29297068 . C T 222 . DP=52;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,22,28;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr2 29356567 . G C 83 . DP=75;VDB=0.0345;AF1=0.5;AC1=1;DP4=30,17,17,10;MQ=60;FQ=86;PV4=1,2.2e-29,1,1 GT:PL:GQ 0/1:113,0,255:99 chr2 29356669 . A G 225 . DP=57;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,14,8,31;MQ=60;FQ=199;PV4=1,0.3,1,1 GT:PL:GQ 0/1:255,0,226:99 chr2 29366875 . CACAG CACAGACAG 217 . INDEL;DP=36;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,15,2,15;MQ=56;FQ=217;PV4=1,1,0.0089,0.077 GT:PL:GQ 0/1:255,0,255:99 chr2 29383256 . G T 225 . DP=63;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,18,4,23;MQ=60;FQ=225;PV4=0.023,0.17,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 29383374 . G A 102 . DP=15;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:135,45,0:87 chr2 29390299 . AG A 217 . INDEL;DP=62;VDB=0.0271;AF1=0.5;AC1=1;DP4=21,8,23,10;MQ=60;FQ=217;PV4=1,0.29,1,0.054 GT:PL:GQ 0/1:255,0,255:99 chr2 29416572 . T C 222 . DP=103;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,55,44;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 29419591 . G T 110 . DP=56;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,47,7;MQ=60;FQ=-190 GT:PL:GQ 1/1:143,163,0:99 chr2 29444095 . C T 164 . DP=16;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,5,10;MQ=60;FQ=-72 GT:PL:GQ 1/1:197,45,0:87 chr2 29446202 . G A 225 . DP=55;VDB=0.0345;AF1=0.5;AC1=1;DP4=26,6,15,6;MQ=60;FQ=225;PV4=0.51,1,1,0.011 GT:PL:GQ 0/1:255,0,255:99 chr2 29455267 . A G 222 . DP=55;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,27,25;MQ=60;FQ=-169;PV4=1,1,1,0.23 GT:PL:GQ 1/1:255,142,0:99 chr2 29498210 . A G 90 . DP=9;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:123,27,0:51 chr2 29519622 . C T 126 . DP=10;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:159,24,0:45 chr2 29525341 . A G 108 . DP=6;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:141,18,0:33 chr2 29525345 . T C 62.1 . DP=7;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:95,21,0:39 chr2 29541104 . C T 172 . DP=25;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,7;MQ=60;FQ=-93 GT:PL:GQ 1/1:205,66,0:99 chr2 29543663 . T C,A 176 . DP=20;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,5;MQ=60;FQ=-84 GT:PL:GQ 1/1:209,57,0,208,42,205:99 chr2 29917940 . C G 53.2 . DP=9;VDB=0.0398;AF1=0.7304;AC1=1;DP4=0,1,1,7;MQ=57;FQ=-25;PV4=1,0.0027,1,1 GT:PL:GQ 0/1:82,0,2:5 chr2 29940529 . A T 222 . DP=96;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,48,43;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 30143499 . G C 82 . DP=9;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:115,27,0:51 chr2 30454981 . G C 39 . DP=21;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,8,3,4;MQ=60;FQ=42;PV4=1,9.8e-05,1,1 GT:PL:GQ 0/1:69,0,234:72 chr2 30682360 . G A 135 . DP=17;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,15,2;MQ=60;FQ=-78 GT:PL:GQ 1/1:168,51,0:99 chr2 30682630 . T A 102 . DP=26;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,6,3,12;MQ=59;FQ=105;PV4=0.63,3.7e-13,0.23,1 GT:PL:GQ 0/1:132,0,191:99 chr2 30775299 . G A 46.3 . DP=6;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:79,15,0:27 chr2 30791152 . A G 22.3 . DP=8;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:55,15,0:26 chr2 30828792 . G A 35 . DP=19;VDB=0.0025;AF1=0.5;AC1=1;DP4=14,0,4,0;MQ=59;FQ=38;PV4=1,0.049,1,1 GT:PL:GQ 0/1:65,0,176:68 chr2 30862842 . AG A 100 . INDEL;DP=15;VDB=0.0014;AF1=0.5;AC1=1;DP4=7,0,8,0;MQ=60;FQ=101;PV4=1,4.9e-12,1,0.48 GT:PL:GQ 0/1:138,0,139:99 chr2 30862980 . C T 112 . DP=108;VDB=0.0380;AF1=0.5;AC1=1;DP4=32,27,23,22;MQ=60;FQ=115;PV4=0.84,3.4e-38,0.42,1 GT:PL:GQ 0/1:142,0,255:99 chr2 30863092 . C T 225 . DP=86;VDB=0.0393;AF1=0.5;AC1=1;DP4=21,24,18,22;MQ=60;FQ=225;PV4=1,0.14,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 30863108 . A G 175 . DP=74;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,21,15,18;MQ=60;FQ=178;PV4=1,2.8e-14,1,1 GT:PL:GQ 0/1:205,0,255:99 chr2 30959262 . G T 95 . DP=33;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,1,15,3;MQ=59;FQ=98;PV4=0.61,7.4e-14,0.18,0.25 GT:PL:GQ 0/1:125,0,192:99 chr2 30976058 . C T 225 . DP=57;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,15,12,18;MQ=58;FQ=225;PV4=1,0.34,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 30977073 . G A 225 . DP=47;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,5,16,8;MQ=59;FQ=225;PV4=0.52,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 30980940 . C T 215 . DP=41;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,32,9;MQ=59;FQ=-150 GT:PL:GQ 1/1:248,123,0:99 chr2 30986989 . G T 207 . DP=30;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,8;MQ=60;FQ=-105 GT:PL:GQ 1/1:240,78,0:99 chr2 31009977 . G C 70 . DP=9;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:103,27,0:51 chr2 31133939 . G C 225 . DP=67;VDB=0.0393;AF1=0.5;AC1=1;DP4=13,21,10,20;MQ=60;FQ=225;PV4=0.8,0.076,1,0.19 GT:PL:GQ 0/1:255,0,255:99 chr2 31135184 . G T 161 . DP=33;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,9,9,14;MQ=59;FQ=122;PV4=0.12,1.7e-10,1,0.0074 GT:PL:GQ 0/1:191,0,149:99 chr2 31188957 . C T 55.5 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:88,12,0:21 chr2 31189144 . C T 183 . DP=81;VDB=0.0393;AF1=0.5;AC1=1;DP4=15,19,15,27;MQ=60;FQ=186;PV4=0.49,1.6e-20,1,0.14 GT:PL:GQ 0/1:213,0,255:99 chr2 31189236 . G A 97 . DP=29;VDB=0.0392;AF1=0.5;AC1=1;DP4=0,13,2,13;MQ=59;FQ=100;PV4=0.48,6.4e-10,0.18,1 GT:PL:GQ 0/1:127,0,158:99 chr2 31397696 . G C 44 . DP=11;VDB=0.0384;AF1=0.5;AC1=1;DP4=2,4,1,4;MQ=60;FQ=47;PV4=1,0.0051,1,1 GT:PL:GQ 0/1:74,0,148:77 chr2 31397727 . T C 17.1 . DP=7;VDB=0.0309;AF1=0.5;AC1=1;DP4=1,2,1,3;MQ=60;FQ=20.1;PV4=1,9.2e-05,1,0.42 GT:PL:GQ 0/1:47,0,87:50 chr2 31399358 . T G 26 . DP=7;VDB=0.0008;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=17.8;PV4=1,0.035,1,1 GT:PL:GQ 0/1:56,0,45:48 chr2 31399414 . G C 117 . DP=40;VDB=0.0164;AF1=0.5;AC1=1;DP4=15,1,20,4;MQ=59;FQ=120;PV4=0.63,1.5e-22,1,1 GT:PL:GQ 0/1:147,0,196:99 chr2 31399659 . T C 53 . DP=31;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,13,0,14;MQ=59;FQ=56;PV4=0.23,1.1e-10,0.15,1 GT:PL:GQ 0/1:83,0,240:86 chr2 31399751 . T G 31 . DP=12;VDB=0.0014;AF1=0.5;AC1=1;DP4=4,0,6,1;MQ=60;FQ=34;PV4=1,5e-06,1,1 GT:PL:GQ 0/1:61,0,86:64 chr2 31399988 . C T 179 . DP=38;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,15,2,15;MQ=60;FQ=182;PV4=0.42,1,1,1 GT:PL:GQ 0/1:209,0,255:99 chr2 31400039 . A G 29 . DP=11;VDB=0.0204;AF1=0.5;AC1=1;DP4=1,7,0,3;MQ=60;FQ=32;PV4=1,1,1,1 GT:PL:GQ 0/1:59,0,155:62 chr2 31400722 . G A 124 . DP=41;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,10,10,12;MQ=60;FQ=127;PV4=1,1.7e-13,1,0.48 GT:PL:GQ 0/1:154,0,255:99 chr2 31401290 . A C 168 . DP=34;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,28,4;MQ=59;FQ=-123 GT:PL:GQ 1/1:201,96,0:99 chr2 31401499 . G A 28 . DP=12;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,4,1,6;MQ=60;FQ=31;PV4=1,1e-06,1,1 GT:PL:GQ 0/1:58,0,94:61 chr2 31403947 . G A 57 . DP=12;VDB=0.0059;AF1=0.5;AC1=1;DP4=0,8,0,4;MQ=60;FQ=60;PV4=1,0.24,1,1 GT:PL:GQ 0/1:87,0,153:90 chr2 31409115 . T C 4.33 . DP=3;VDB=0.0186;AF1=0.5429;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-19.1;PV4=1,1,1,1 GT:PL:GQ 0/1:32,0,8:14 chr2 31410653 . C T 75 . DP=105;VDB=0.0345;AF1=0.5;AC1=1;DP4=39,23,29,12;MQ=60;FQ=78;PV4=0.52,9.9e-40,0.38,1 GT:PL:GQ 0/1:105,0,255:99 chr2 31410708 . C T 222 . DP=109;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,49,53;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 31410728 . C A 86 . DP=104;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,37,14,28;MQ=60;FQ=89;PV4=0.68,1.2e-49,0.12,0.41 GT:PL:GQ 0/1:116,0,255:99 chr2 31411184 . C A 151 . DP=89;VDB=0.0380;AF1=0.5;AC1=1;DP4=35,16,21,15;MQ=60;FQ=154;PV4=0.37,3e-22,0.12,0.41 GT:PL:GQ 0/1:181,0,255:99 chr2 31411242 . C A 75 . DP=95;VDB=0.0298;AF1=0.5;AC1=1;DP4=21,35,17,20;MQ=60;FQ=78;PV4=0.52,1.9e-44,1,1 GT:PL:GQ 0/1:105,0,255:99 chr2 31411310 . C T 146 . DP=44;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,22,1,15;MQ=60;FQ=149;PV4=0.63,0.058,1,1 GT:PL:GQ 0/1:176,0,255:99 chr2 31411365 . G A 69 . DP=13;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,7,0,5;MQ=60;FQ=72;PV4=1,0.014,1,1 GT:PL:GQ 0/1:99,0,142:99 chr2 31412443 . T C 72 . DP=24;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,3,9,2;MQ=60;FQ=75;PV4=1,3.9e-07,1,0.038 GT:PL:GQ 0/1:102,0,231:99 chr2 31412646 . T C 225 . DP=96;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,27,20,32;MQ=59;FQ=225;PV4=0.66,0.026,1,0.0037 GT:PL:GQ 0/1:255,0,255:99 chr2 31412670 . C T 225 . DP=71;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,22,10,27;MQ=59;FQ=225;PV4=0.79,0.036,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 31414223 . G A 41 . DP=9;VDB=0.0225;AF1=0.5;AC1=1;DP4=0,6,1,2;MQ=60;FQ=44;PV4=0.33,1,1,1 GT:PL:GQ 0/1:71,0,108:74 chr2 31414807 . C G 222 . DP=29;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,24,3;MQ=59;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr2 31420245 . A G 70 . DP=40;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,18,4,10;MQ=60;FQ=73;PV4=1,1.5e-12,1,1 GT:PL:GQ 0/1:100,0,255:99 chr2 31422452 . T A 115 . DP=52;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,19,5,20;MQ=60;FQ=118;PV4=1,1.1e-20,1,0.47 GT:PL:GQ 0/1:145,0,255:99 chr2 31422514 . T A 41 . DP=28;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,15,1,8;MQ=59;FQ=44;PV4=1,6.9e-11,0.081,0.25 GT:PL:GQ 0/1:71,0,255:74 chr2 31423443 . G A 32 . DP=19;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,5,8,0;MQ=59;FQ=35;PV4=0.036,3.1e-10,0.14,0.38 GT:PL:GQ 0/1:62,0,228:65 chr2 31467351 . T A 222 . DP=45;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,29;MQ=60;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr2 31483890 . T C 65 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:97,9,0:16 chr2 31484334 . G A 134 . DP=30;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,25,5;MQ=60;FQ=-117 GT:PL:GQ 1/1:167,90,0:99 chr2 31488965 . C T 76 . DP=10;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:109,27,0:51 chr2 31567632 . T G 106 . DP=38;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,5,16,5;MQ=60;FQ=109;PV4=0.47,5.2e-10,1,1 GT:PL:GQ 0/1:136,0,222:99 chr2 31567743 . T C 166 . DP=20;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,3,17;MQ=60;FQ=-87 GT:PL:GQ 1/1:199,60,0:99 chr2 31569471 . A G 21.5 . DP=4;VDB=0.0110;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:54,12,0:21 chr2 31570376 . T C 134 . DP=10;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:167,30,0:57 chr2 31570626 . C T 26.3 . DP=5;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:59,15,0:27 chr2 31570631 . A G 36.3 . DP=5;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:69,15,0:27 chr2 31571241 . G C 222 . DP=25;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,14;MQ=59;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr2 31571786 . A G 178 . DP=53;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,30;MQ=60;FQ=-175 GT:PL:GQ 1/1:211,148,0:99 chr2 31572398 . A G 60 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:92,9,0:16 chr2 31572482 . TGGGG TGGGGG 164 . INDEL;DP=32;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,26,6;MQ=60;FQ=-131 GT:PL:GQ 1/1:205,96,0:99 chr2 31587235 . G A 222 . DP=14;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,5,8;MQ=58;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr2 31588288 . T A 222 . DP=49;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,25,20;MQ=60;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr2 31589847 . G A 126 . DP=50;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,12,10,10;MQ=60;FQ=129;PV4=0.77,2.4e-14,1,1 GT:PL:GQ 0/1:156,0,255:99 chr2 31590759 . C T 113 . DP=15;VDB=0.0011;AF1=0.5;AC1=1;DP4=8,0,6,1;MQ=60;FQ=114;PV4=0.47,0.13,1,0.23 GT:PL:GQ 0/1:143,0,146:99 chr2 31590785 . C G 77 . DP=33;VDB=0.0216;AF1=0.5;AC1=1;DP4=15,1,14,1;MQ=58;FQ=80;PV4=1,2.3e-14,1,0.42 GT:PL:GQ 0/1:107,0,205:99 chr2 31596955 . G A 5.46 . DP=5;VDB=0.0180;AF1=0.4999;AC1=1;DP4=0,3,0,2;MQ=55;FQ=7.8;PV4=1,0.00081,0.14,0.049 GT:PL:GQ 0/1:34,0,86:34 chr2 31600017 . C T 129 . DP=45;VDB=0.0393;AF1=0.5;AC1=1;DP4=5,18,7,14;MQ=59;FQ=132;PV4=0.5,8.4e-17,1,0.44 GT:PL:GQ 0/1:159,0,255:99 chr2 31600146 . T C 90.5 . DP=4;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:123,12,0:21 chr2 31609448 . A C 214 . DP=33;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,12,21;MQ=59;FQ=-126 GT:PL:GQ 1/1:247,99,0:99 chr2 31611029 . G A 48 . DP=7;VDB=0.0211;AF1=0.5;AC1=1;DP4=4,0,3,0;MQ=60;FQ=50.9;PV4=1,1,1,1 GT:PL:GQ 0/1:78,0,94:81 chr2 31611367 . T C 57 . DP=3;VDB=0.0050;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:89,9,0:16 chr2 31621598 . T C 119 . DP=14;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,5,1,7;MQ=60;FQ=113;PV4=1,0.072,1,0.061 GT:PL:GQ 0/1:149,0,140:99 chr2 31626045 . G C 56 . DP=38;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,13,0,19;MQ=60;FQ=59;PV4=0.19,4e-17,1,0.098 GT:PL:GQ 0/1:86,0,223:89 chr2 31628705 . T G 151 . DP=57;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,9,21,8;MQ=60;FQ=154;PV4=0.57,3.3e-21,1,0.17 GT:PL:GQ 0/1:181,0,255:99 chr2 31805619 . T C 59.1 . DP=7;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:92,21,0:39 chr2 31805675 . A G 78 . DP=15;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,14,1;MQ=60;FQ=-72 GT:PL:GQ 1/1:111,45,0:87 chr2 31805706 . G C 197 . DP=26;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,19,6;MQ=60;FQ=-102 GT:PL:GQ 1/1:230,75,0:99 chr2 31805880 . AGG AGGG 214 . INDEL;DP=44;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,27;MQ=60;FQ=-161 GT:PL:GQ 1/1:255,126,0:99 chr2 31806031 . C G 36.5 . DP=4;VDB=0.0041;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:69,12,0:21 chr2 32264285 . TCCC TCC 93.5 . INDEL;DP=26;VDB=0.0216;AF1=0.5;AC1=1;DP4=12,0,13,0;MQ=60;FQ=92.4;PV4=1,6.4e-05,1,0.018 GT:PL:GQ 0/1:131,0,129:99 chr2 32369901 . T C 12 . DP=3;VDB=0.0089;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr2 32400532 . T C 16.1 . DP=4;VDB=0.0163;AF1=0.5003;AC1=1;DP4=0,1,0,3;MQ=60;FQ=4.08;PV4=1,0.0046,1,0.33 GT:PL:GQ 0/1:46,0,29:32 chr2 32402636 . C T 64 . DP=9;VDB=0.0373;AF1=0.5;AC1=1;DP4=2,2,2,2;MQ=60;FQ=66.8;PV4=1,0.16,1,0.35 GT:PL:GQ 0/1:94,0,108:97 chr2 32418808 . T A 95 . DP=17;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,14,1;MQ=58;FQ=-72 GT:PL:GQ 1/1:128,45,0:87 chr2 32434701 . A G 3.52 . DP=3;VDB=0.0141;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:33,9,0:7 chr2 32460348 . A G 35.8 . DP=3;VDB=0.0107;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:67,6,0:10 chr2 32466029 . A G 207 . DP=35;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,22,11;MQ=59;FQ=-126 GT:PL:GQ 1/1:240,99,0:99 chr2 32475109 . G A 208 . DP=123;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,58,59;MQ=59;FQ=-282 GT:PL:GQ 1/1:241,255,0:99 chr2 32476390 . T G 222 . DP=65;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,20,42;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr2 32481793 . ATTT ATT 214 . INDEL;DP=34;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,21,12;MQ=60;FQ=-134 GT:PL:GQ 1/1:255,99,0:99 chr2 32667058 . C A 55 . DP=13;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:88,33,0:63 chr2 32667061 . T A 50 . DP=14;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:83,33,0:63 chr2 32667182 . G C 222 . DP=95;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,55,34;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 32712875 . A C 173 . DP=59;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,53;MQ=60;FQ=-199 GT:PL:GQ 1/1:206,172,0:99 chr2 32713706 . A T 104 . DP=8;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,2,6;MQ=57;FQ=-51 GT:PL:GQ 1/1:137,24,0:45 chr2 32724590 . gtctctctctctctctctct gtctctctctctctctct 23.5 . INDEL;DP=29;VDB=0.0118;AF1=0.5;AC1=1;DP4=20,5,3,1;MQ=59;FQ=26.5;PV4=1,5.9e-06,0.0048,1 GT:PL:GQ 0/1:61,0,255:64 chr2 32740138 . T C 174 . DP=138;VDB=0.0380;AF1=0.5;AC1=1;DP4=48,26,42,19;MQ=60;FQ=177;PV4=0.71,1.4e-39,0.45,1 GT:PL:GQ 0/1:204,0,255:99 chr2 32749903 . T C 36.3 . DP=5;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,5,0;MQ=44;FQ=-42 GT:PL:GQ 1/1:69,15,0:27 chr2 32822957 . G A 222 . DP=39;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,10,27;MQ=59;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr2 32855615 . A G 129 . DP=7;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,1;MQ=56;FQ=-45 GT:PL:GQ 1/1:162,18,0:33 chr2 32860415 . C T 187 . DP=25;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,7,16;MQ=58;FQ=-96 GT:PL:GQ 1/1:220,69,0:99 chr2 32927863 . G A 225 . DP=78;VDB=0.0298;AF1=0.5;AC1=1;DP4=29,13,24,10;MQ=59;FQ=225;PV4=1,0.28,0.057,1 GT:PL:GQ 0/1:255,0,255:99 chr2 32958838 . CTT C 70.5 . INDEL;DP=14;VDB=0.0216;AF1=0.5;AC1=1;DP4=10,0,3,0;MQ=60;FQ=73.5;PV4=1,0.0004,1,0.16 GT:PL:GQ 0/1:108,0,255:99 chr2 32959024 . T C 180 . DP=101;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,33,15,43;MQ=60;FQ=183;PV4=0.32,7.7e-39,1,1 GT:PL:GQ 0/1:210,0,255:99 chr2 32959075 . G A 150 . DP=39;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,21,1,15;MQ=60;FQ=152;PV4=0.43,0.019,1,1 GT:PL:GQ 0/1:180,0,185:99 chr2 32961691 . C T 86 . DP=13;VDB=0.0019;AF1=0.5;AC1=1;DP4=7,0,6,0;MQ=60;FQ=89;PV4=1,0.064,1,0.4 GT:PL:GQ 0/1:116,0,139:99 chr2 32961745 . T A 107 . DP=46;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,29,8;MQ=60;FQ=-138 GT:PL:GQ 1/1:140,111,0:99 chr2 32983526 . C T 225 . DP=43;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,10,9,20;MQ=60;FQ=196;PV4=1,0.21,1,1 GT:PL:GQ 0/1:255,0,223:99 chr2 33036324 . G A 198 . DP=19;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,5,2,12;MQ=60;FQ=66;PV4=1,0.32,1,0.44 GT:PL:GQ 0/1:228,0,93:96 chr2 33045867 . GTTTTTT GTTTTTTT 7.35 . INDEL;DP=15;VDB=0.0216;AF1=0.5;AC1=1;DP4=7,0,8,0;MQ=60;FQ=4.95;PV4=1,1,1,0.27 GT:PL:GQ 0/1:44,0,39:41 chr2 33174072 . A C 35 . DP=10;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,4,0,6;MQ=58;FQ=38;PV4=1,6.2e-05,0.22,1 GT:PL:GQ 0/1:65,0,90:68 chr2 33335847 . C T 73 . DP=57;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,22,3,24;MQ=59;FQ=76;PV4=0.3,1.3e-28,0.48,1 GT:PL:GQ 0/1:103,0,255:99 chr2 33359565 . G A 171 . DP=62;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,16,21,13;MQ=58;FQ=174;PV4=0.2,3.6e-16,1,0.27 GT:PL:GQ 0/1:201,0,255:99 chr2 33392911 . G A 175 . DP=120;VDB=0.0244;AF1=0.5;AC1=1;DP4=28,32,22,31;MQ=60;FQ=178;PV4=0.7,9.5e-19,0.066,1 GT:PL:GQ 0/1:205,0,255:99 chr2 33407285 . G A 183 . DP=83;VDB=0.0345;AF1=0.5;AC1=1;DP4=24,13,33,13;MQ=59;FQ=186;PV4=0.63,1.9e-24,1,0.47 GT:PL:GQ 0/1:213,0,255:99 chr2 33412077 . G A 225 . DP=64;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,12,13,30;MQ=60;FQ=225;PV4=0.4,0.19,1,0.28 GT:PL:GQ 0/1:255,0,255:99 chr2 33413640 . G T 41 . DP=43;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,5,14,3;MQ=59;FQ=44;PV4=1,3e-26,1,1 GT:PL:GQ 0/1:71,0,255:74 chr2 33413949 . G A 42 . DP=21;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,10,0,11;MQ=59;FQ=45;PV4=1,5.6e-07,1,0.093 GT:PL:GQ 0/1:72,0,143:75 chr2 33442549 . G A 19.1 . DP=16;VDB=0.0216;AF1=0.5;AC1=1;DP4=8,1,6,1;MQ=59;FQ=22;PV4=1,1.3e-08,0.14,0.41 GT:PL:GQ 0/1:49,0,179:52 chr2 33447202 . C T 225 . DP=147;VDB=0.0380;AF1=0.5;AC1=1;DP4=48,36,27,34;MQ=60;FQ=225;PV4=0.13,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 33488419 . G A 225 . DP=58;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,17,10,17;MQ=59;FQ=225;PV4=0.79,0.43,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 33500848 . A G 175 . DP=98;VDB=0.0298;AF1=0.5;AC1=1;DP4=31,17,32,16;MQ=60;FQ=178;PV4=1,2.5e-34,1,1 GT:PL:GQ 0/1:205,0,255:99 chr2 33525407 . A G 70 . DP=10;VDB=0.0006;AF1=0.5;AC1=1;DP4=5,0,5,0;MQ=60;FQ=72.9;PV4=1,0.13,1,0.32 GT:PL:GQ 0/1:100,0,115:99 chr2 33540138 . G A 109 . DP=7;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,6,0;MQ=56;FQ=-45 GT:PL:GQ 1/1:142,18,0:33 chr2 33540248 . G A 222 . DP=46;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,29,13;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr2 33568113 . A G 56 . DP=33;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,16,3,8;MQ=60;FQ=59;PV4=1,4e-12,1,0.48 GT:PL:GQ 0/1:86,0,255:89 chr2 33568137 . G A 100 . DP=18;VDB=0.0398;AF1=0.5;AC1=1;DP4=1,10,2,4;MQ=59;FQ=103;PV4=0.51,0.0099,0.092,1 GT:PL:GQ 0/1:130,0,198:99 chr2 33568191 . T C 42.5 . DP=4;VDB=0.0059;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:75,12,0:21 chr2 33585796 . T C 222 . DP=100;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,42,54;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 33614187 . C T 87 . DP=12;VDB=0.0099;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=58;FQ=74.9;PV4=1,0.37,1,1 GT:PL:GQ 0/1:117,0,102:99 chr2 33623306 . C T 11.3 . DP=3;VDB=0.0194;AF1=0.5004;AC1=1;DP4=1,0,2,0;MQ=52;FQ=3.43;PV4=1,0.17,0.33,1 GT:PL:GQ 0/1:41,0,28:31 chr2 33744958 . C T 67 . DP=19;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,5,4,1;MQ=60;FQ=70;PV4=1,1,1,1 GT:PL:GQ 0/1:97,0,255:99 chr2 33745208 . T C 128 . DP=56;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,21,7,17;MQ=60;FQ=131;PV4=1,3.3e-20,1,0.44 GT:PL:GQ 0/1:158,0,255:99 chr2 33764286 . T C 70 . DP=24;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,9,2,8;MQ=60;FQ=73;PV4=0.65,5e-09,1,1 GT:PL:GQ 0/1:100,0,255:99 chr2 33784161 . G A 145 . DP=19;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,4,1,11;MQ=60;FQ=123;PV4=0.12,1,1,1 GT:PL:GQ 0/1:175,0,150:99 chr2 33787976 . CCTAACTAACTAACTA CCTAACTAACTA 214 . INDEL;DP=18;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,8;MQ=55;FQ=-61.5 GT:PL:GQ 1/1:255,27,0:51 chr2 33952055 . C G 9.49 . DP=3;VDB=0.0170;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:41,9,0:12 chr2 33952413 . T C 222 . DP=82;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,52,28;MQ=59;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr2 33952456 . C G 218 . DP=67;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,35,31;MQ=59;FQ=-226 GT:PL:GQ 1/1:251,199,0:99 chr2 33952621 . G A 222 . DP=88;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,58,27;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 35696612 . C T 45.5 . DP=4;VDB=0.0236;AF1=1;AC1=2;DP4=0,0,2,2;MQ=60;FQ=-39 GT:PL:GQ 1/1:78,12,0:21 chr2 36605585 . A G 54 . DP=15;VDB=0.0099;AF1=0.5;AC1=1;DP4=4,3,0,8;MQ=60;FQ=57;PV4=0.026,1.7e-05,1,1 GT:PL:GQ 0/1:84,0,168:87 chr2 36668395 . T A 71 . DP=50;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,6,23,3;MQ=60;FQ=74;PV4=0.26,9.5e-21,0.19,1 GT:PL:GQ 0/1:101,0,255:99 chr2 36669645 . T C 15.1 . DP=12;VDB=0.0099;AF1=0.5;AC1=1;DP4=5,2,4,1;MQ=60;FQ=18.1;PV4=1,6.7e-08,1,1 GT:PL:GQ 0/1:45,0,164:48 chr2 36669670 . C A 21 . DP=15;VDB=0.0384;AF1=0.5;AC1=1;DP4=6,3,4,1;MQ=60;FQ=24;PV4=1,1.6e-08,1,0.27 GT:PL:GQ 0/1:51,0,216:54 chr2 36704144 . C T 222 . DP=50;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,31,17;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr2 36739553 . T C 177 . DP=21;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,20;MQ=60;FQ=-87 GT:PL:GQ 1/1:210,60,0:99 chr2 36756288 . T C 161 . DP=67;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,31,34;MQ=60;FQ=-223 GT:PL:GQ 1/1:194,196,0:99 chr2 36771701 . C A 68 . DP=15;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,9,0,5;MQ=60;FQ=71;PV4=1,1,1,1 GT:PL:GQ 0/1:98,0,183:99 chr2 36775315 . C G 115 . DP=15;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,12,2;MQ=55;FQ=-69 GT:PL:GQ 1/1:148,42,0:81 chr2 36775410 . ctttttttttttttttt cTTtttttttttttttttt,cTtttttttttttttttt 3.91 . INDEL;DP=32;VDB=0.0392;AF1=1;AC1=2;DP4=0,5,8,6;MQ=60;FQ=-42.5;PV4=0.045,1,1,1 GT:PL:GQ 1/1:41,8,0,45,7,40:6 chr2 36779144 . T G 9.52 . DP=18;VDB=0.0384;AF1=0.5;AC1=1;DP4=8,3,5,1;MQ=60;FQ=12.3;PV4=1,2.8e-05,1,0.37 GT:PL:GQ 0/1:39,0,209:41 chr2 36781401 . T C 140 . DP=31;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,8,2,7;MQ=60;FQ=143;PV4=0.11,1,1,1 GT:PL:GQ 0/1:170,0,255:99 chr2 36782656 . G A 54 . DP=22;VDB=0.0042;AF1=0.5;AC1=1;DP4=8,1,12,0;MQ=60;FQ=57;PV4=0.43,7.5e-05,1,1 GT:PL:GQ 0/1:84,0,162:87 chr2 36782763 . C T 225 . DP=118;VDB=0.0365;AF1=0.5;AC1=1;DP4=48,18,33,18;MQ=60;FQ=225;PV4=0.42,3.7e-05,1,0.39 GT:PL:GQ 0/1:255,0,255:99 chr2 36782886 . G A 70 . DP=104;VDB=0.0298;AF1=0.5;AC1=1;DP4=18,49,8,29;MQ=60;FQ=73;PV4=0.64,2.9e-29,1,0.46 GT:PL:GQ 0/1:100,0,255:99 chr2 36783111 . C A 79 . DP=26;VDB=0.0325;AF1=0.5;AC1=1;DP4=13,1,8,3;MQ=60;FQ=82;PV4=0.29,1.9e-10,1,0.08 GT:PL:GQ 0/1:109,0,199:99 chr2 36783127 . T C 79 . DP=29;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,3,6,4;MQ=60;FQ=82;PV4=0.36,0.00032,1,1 GT:PL:GQ 0/1:109,0,230:99 chr2 36783215 . C T 109 . DP=44;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,19,6,9;MQ=60;FQ=112;PV4=0.75,2.3e-08,1,1 GT:PL:GQ 0/1:139,0,255:99 chr2 36805676 . A G 93 . DP=48;VDB=0.0164;AF1=0.5;AC1=1;DP4=19,6,18,5;MQ=60;FQ=96;PV4=1,6.3e-21,1,0.28 GT:PL:GQ 0/1:123,0,255:99 chr2 36806021 . G A 72 . DP=64;VDB=0.0099;AF1=0.5;AC1=1;DP4=2,29,3,29;MQ=60;FQ=75;PV4=1,2.3e-28,1,1 GT:PL:GQ 0/1:102,0,245:99 chr2 36806051 . A G 130 . DP=30;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,17,0,13;MQ=60;FQ=133;PV4=1,0.083,1,0.13 GT:PL:GQ 0/1:160,0,184:99 chr2 36808350 . C T 70 . DP=31;VDB=0.0066;AF1=0.5;AC1=1;DP4=16,0,14,1;MQ=60;FQ=73;PV4=0.48,3.5e-16,1,0.07 GT:PL:GQ 0/1:100,0,178:99 chr2 36808732 . T G 172 . DP=67;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,13,54;MQ=60;FQ=-229 GT:PL:GQ 1/1:205,202,0:99 chr2 36810473 . G T 121 . DP=63;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,17,17,12;MQ=60;FQ=124;PV4=0.46,1.1e-17,1,0.39 GT:PL:GQ 0/1:151,0,255:99 chr2 36810586 . T C 145 . DP=22;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,9,1,10;MQ=60;FQ=148;PV4=1,0.28,1,0.5 GT:PL:GQ 0/1:175,0,188:99 chr2 36943338 . C G 55.5 . DP=4;VDB=0.0161;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:88,12,0:21 chr2 36943419 . T C 150 . DP=15;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,8,4;MQ=60;FQ=-63 GT:PL:GQ 1/1:183,36,0:69 chr2 36994439 . A C 129 . DP=14;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,6,1,6;MQ=60;FQ=100;PV4=1,0.24,1,1 GT:PL:GQ 0/1:159,0,127:99 chr2 37001570 . C T 222 . DP=26;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,20;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr2 37010574 . G A 222 . DP=76;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,50,23;MQ=60;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr2 37077015 . C A 81 . DP=10;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:114,30,0:57 chr2 37078095 . ATTTTTTTTTTTT ATTTTTTTTTTTTTT,ATTTTTTTTTTTTT 19.6 . INDEL;DP=9;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:60,18,0,62,2,53:31 chr2 37094945 . A G 72 . DP=15;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,10,3;MQ=60;FQ=-66 GT:PL:GQ 1/1:105,39,0:75 chr2 37095139 . G C 13 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr2 37152372 . A C 58 . DP=29;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,8,4,8;MQ=56;FQ=61;PV4=0.45,1.7e-15,0.00063,0.054 GT:PL:GQ 0/1:88,0,255:91 chr2 37152425 . T C 34 . DP=18;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,10,1,5;MQ=59;FQ=37;PV4=1,0.0025,0.062,1 GT:PL:GQ 0/1:64,0,204:67 chr2 37230734 . C T 119 . DP=85;VDB=0.0398;AF1=0.5;AC1=1;DP4=34,14,27,9;MQ=59;FQ=122;PV4=0.81,2e-33,0.42,0.43 GT:PL:GQ 0/1:149,0,255:99 chr2 37230888 . A G 157 . DP=22;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,8,1,11;MQ=60;FQ=147;PV4=1,0.038,1,1 GT:PL:GQ 0/1:187,0,174:99 chr2 37255015 . G A 179 . DP=17;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,16,0;MQ=60;FQ=-75 GT:PL:GQ 1/1:212,48,0:93 chr2 37302556 . gaaaaaaaaa gaaaaaaaa 9.92 . INDEL;DP=15;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,14,1;MQ=60;FQ=-79.5 GT:PL:GQ 1/1:50,45,0:51 chr2 37306343 . G A 140 . DP=18;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,10,7;MQ=60;FQ=-78 GT:PL:GQ 1/1:173,51,0:99 chr2 37317869 . C T 222 . DP=18;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,4,14;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr2 37323427 . A G 16.1 . DP=11;VDB=0.0384;AF1=0.5;AC1=1;DP4=0,4,1,4;MQ=57;FQ=19.1;PV4=1,9.9e-06,0.2,0.27 GT:PL:GQ 0/1:46,0,98:49 chr2 37373982 . A AT 214 . INDEL;DP=61;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,43,16;MQ=59;FQ=-213 GT:PL:GQ 1/1:255,178,0:99 chr2 37402270 . C G 103 . DP=8;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,1,3,2;MQ=60;FQ=24;PV4=1,0.4,1,1 GT:PL:GQ 0/1:133,0,51:54 chr2 37410537 . C T 77 . DP=55;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,3,21,5;MQ=60;FQ=80;PV4=0.7,2.1e-25,1,1 GT:PL:GQ 0/1:107,0,255:99 chr2 37414431 . A C 115 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,1,12,4;MQ=60;FQ=109;PV4=1,6.7e-10,1,0.48 GT:PL:GQ 0/1:145,0,137:99 chr2 37415496 . G C 22 . DP=12;VDB=0.0008;AF1=0.5;AC1=1;DP4=7,0,5,0;MQ=60;FQ=25;PV4=1,4.2e-06,1,1 GT:PL:GQ 0/1:52,0,137:55 chr2 37438993 . G A 225 . DP=78;VDB=0.0398;AF1=0.5;AC1=1;DP4=29,4,30,12;MQ=60;FQ=225;PV4=0.098,0.016,0.19,0.022 GT:PL:GQ 0/1:255,0,255:99 chr2 37456032 . C T 173 . DP=38;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,32,5;MQ=60;FQ=-138 GT:PL:GQ 1/1:206,111,0:99 chr2 37458711 . G A 173 . DP=150;VDB=0.0380;AF1=0.5;AC1=1;DP4=36,42,33,37;MQ=60;FQ=176;PV4=1,6.4e-31,0.15,1 GT:PL:GQ 0/1:203,0,255:99 chr2 37513364 . T C 102 . DP=42;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,5,16,6;MQ=59;FQ=105;PV4=1,6.7e-15,1,1 GT:PL:GQ 0/1:132,0,255:99 chr2 37518045 . G C 225 . DP=101;VDB=0.0399;AF1=0.5;AC1=1;DP4=24,24,28,23;MQ=60;FQ=225;PV4=0.69,0.37,1,0.44 GT:PL:GQ 0/1:255,0,255:99 chr2 37543371 . A G 160 . DP=41;VDB=0.0081;AF1=0.5;AC1=1;DP4=18,4,18,1;MQ=60;FQ=163;PV4=0.35,0.0013,1,1 GT:PL:GQ 0/1:190,0,255:99 chr2 38177525 . A C 77 . DP=47;VDB=0.0099;AF1=0.5;AC1=1;DP4=17,3,27,0;MQ=60;FQ=80;PV4=0.07,1e-13,1,1 GT:PL:GQ 0/1:107,0,246:99 chr2 38178406 . A G 40 . DP=31;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,5,5,3;MQ=60;FQ=43;PV4=0.64,6.9e-11,1,1 GT:PL:GQ 0/1:70,0,255:73 chr2 38179134 . G A 222 . DP=186;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,77,98;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 38179414 . CTGT CT 185 . INDEL;DP=38;VDB=0.0140;AF1=0.5;AC1=1;DP4=8,16,1,12;MQ=59;FQ=188;PV4=0.12,0.067,0.089,0.44 GT:PL:GQ 0/1:223,0,255:99 chr2 38218470 . TA T 9.04 . INDEL;DP=6;VDB=0.0398;AF1=0.5;AC1=1;DP4=1,3,0,2;MQ=60;FQ=11.8;PV4=1,0.14,1,0.35 GT:PL:GQ 0/1:46,0,118:48 chr2 38244826 . A G 142 . DP=13;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,6,2,5;MQ=60;FQ=87;PV4=0.46,1,1,0.47 GT:PL:GQ 0/1:172,0,114:99 chr2 38298150 . A G 225 . DP=47;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,13,11,8;MQ=60;FQ=225;PV4=0.77,0.097,1,0.43 GT:PL:GQ 0/1:255,0,255:99 chr2 38298203 . C G 219 . DP=40;VDB=0.0393;AF1=0.5;AC1=1;DP4=10,14,8,7;MQ=60;FQ=221;PV4=0.53,0.18,1,1 GT:PL:GQ 0/1:249,0,255:99 chr2 38302177 . C A 152 . DP=24;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,5,10,5;MQ=60;FQ=133;PV4=0.4,0.0011,1,1 GT:PL:GQ 0/1:182,0,160:99 chr2 38302390 . G C 29 . DP=8;VDB=0.0236;AF1=0.5;AC1=1;DP4=4,0,2,2;MQ=60;FQ=32;PV4=0.43,0.003,1,1 GT:PL:GQ 0/1:59,0,84:62 chr2 38302544 . G A 20 . DP=11;VDB=0.0095;AF1=0.5;AC1=1;DP4=4,3,1,3;MQ=60;FQ=23;PV4=0.55,0.00047,1,1 GT:PL:GQ 0/1:50,0,166:53 chr2 38526547 . G A 48 . DP=8;VDB=0.0014;AF1=0.5;AC1=1;DP4=1,3,0,3;MQ=60;FQ=51;PV4=1,1,1,0.47 GT:PL:GQ 0/1:78,0,111:81 chr2 38536626 . T G 225 . DP=26;VDB=0.0373;AF1=0.5;AC1=1;DP4=1,8,5,10;MQ=60;FQ=137;PV4=0.35,0.011,1,1 GT:PL:GQ 0/1:255,0,164:99 chr2 38537626 . A C 39 . DP=30;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,17,0,10;MQ=60;FQ=42;PV4=1,1e-11,1,0.088 GT:PL:GQ 0/1:69,0,216:72 chr2 38542573 . T C 49 . DP=13;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,5,0,8;MQ=60;FQ=52;PV4=1,5.4e-06,1,1 GT:PL:GQ 0/1:79,0,99:82 chr2 38604351 . A G 89 . DP=14;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,4,2,3;MQ=60;FQ=92;PV4=1,1,1,1 GT:PL:GQ 0/1:119,0,187:99 chr2 38827161 . A G 119 . DP=69;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,32,4,26;MQ=60;FQ=122;PV4=1,9e-21,0.13,0.096 GT:PL:GQ 0/1:149,0,255:99 chr2 38903022 . T A 46 . DP=14;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,0,7,1;MQ=60;FQ=49;PV4=1,1.2e-05,1,1 GT:PL:GQ 0/1:76,0,96:79 chr2 38916906 . T C 180 . DP=53;VDB=0.0118;AF1=0.5;AC1=1;DP4=17,4,29,1;MQ=60;FQ=183;PV4=0.15,0.017,0.2,1 GT:PL:GQ 0/1:210,0,255:99 chr2 38916970 . A T 121 . DP=108;VDB=0.0399;AF1=0.5;AC1=1;DP4=36,21,29,16;MQ=60;FQ=124;PV4=1,1.7e-29,1,1 GT:PL:GQ 0/1:151,0,255:99 chr2 38956947 . A G 82 . DP=31;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,10,4,16;MQ=60;FQ=85;PV4=0.27,2.8e-17,1,1 GT:PL:GQ 0/1:112,0,142:99 chr2 38977371 . C T 225 . DP=85;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,35,8,31;MQ=60;FQ=225;PV4=1,0.17,1,0.24 GT:PL:GQ 0/1:255,0,255:99 chr2 38977402 . T C 44 . DP=41;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,20,0,19;MQ=60;FQ=47;PV4=1,1.7e-19,1,1 GT:PL:GQ 0/1:74,0,215:77 chr2 39006603 . T G 169 . DP=8;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,4;MQ=60;FQ=-51 GT:PL:GQ 1/1:202,24,0:45 chr2 39025555 . G A 225 . DP=129;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,36,21,40;MQ=59;FQ=225;PV4=0.36,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 39025632 . A G 71 . DP=47;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,19,2,24;MQ=59;FQ=74;PV4=1,2.7e-21,1,0.26 GT:PL:GQ 0/1:101,0,225:99 chr2 39030074 . C T 39 . DP=29;VDB=0.0006;AF1=0.5;AC1=1;DP4=1,19,1,7;MQ=60;FQ=42;PV4=0.5,2.6e-07,1,0.04 GT:PL:GQ 0/1:69,0,209:72 chr2 39033590 . T C 79 . DP=20;VDB=0.0025;AF1=0.5;AC1=1;DP4=13,1,6,0;MQ=60;FQ=82;PV4=1,1,1,1 GT:PL:GQ 0/1:109,0,183:99 chr2 39040845 . G A 4.77 . DP=10;VDB=0.0040;AF1=0.4999;AC1=1;DP4=7,0,3,0;MQ=60;FQ=6.99;PV4=1,0.023,1,1 GT:PL:GQ 0/1:33,0,122:33 chr2 39042639 . G A 222 . DP=114;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,68,44;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 39050019 . G T 85.5 . DP=4;VDB=0.0027;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:118,12,0:21 chr2 39050061 . ATTT ATT 122 . INDEL;DP=19;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,18,0;MQ=60;FQ=-88.5 GT:PL:GQ 1/1:163,54,0:99 chr2 39050141 . A C 222 . DP=75;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,50,24;MQ=59;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr2 39065729 . C A 45 . DP=25;VDB=0.0004;AF1=0.5;AC1=1;DP4=6,0,17,0;MQ=59;FQ=48;PV4=1,5.5e-11,0.28,1 GT:PL:GQ 0/1:75,0,98:78 chr2 39075356 . A C 40 . DP=9;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:73,24,0:45 chr2 39082344 . T C 159 . DP=71;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,28,8,28;MQ=60;FQ=162;PV4=0.77,2e-24,0.17,1 GT:PL:GQ 0/1:189,0,255:99 chr2 39084292 . A G 93 . DP=15;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,2,4,7;MQ=58;FQ=40;PV4=1,5.3e-06,0.31,0.25 GT:PL:GQ 0/1:123,0,67:70 chr2 39090696 . T C 134 . DP=41;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,37;MQ=59;FQ=-144 GT:PL:GQ 1/1:167,117,0:99 chr2 39117117 . G A 91 . DP=36;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,13,5,10;MQ=60;FQ=94;PV4=1,1.1e-14,1,1 GT:PL:GQ 0/1:121,0,255:99 chr2 39185048 . C T 80 . DP=14;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:113,30,0:57 chr2 39187190 . T C 193 . DP=45;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,26,16;MQ=60;FQ=-153 GT:PL:GQ 1/1:226,126,0:99 chr2 39187519 . A G 76.1 . DP=6;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,2,4;MQ=60;FQ=-45 GT:PL:GQ 1/1:109,18,0:33 chr2 39198966 . A G 222 . DP=26;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,25,1;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr2 39214821 . A C 13.9 . DP=2;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr2 39224351 . G T 181 . DP=18;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,18,0;MQ=60;FQ=-81 GT:PL:GQ 1/1:214,54,0:99 chr2 39224615 . GTTTTTTT GTTTTTTTT 18.5 . INDEL;DP=15;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-70.5 GT:PL:GQ 1/1:59,36,0:51 chr2 39233500 . G A 69.1 . DP=7;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,5,1;MQ=60;FQ=-45 GT:PL:GQ 1/1:102,18,0:33 chr2 39262068 . C T 222 . DP=38;VDB=0.0216;AF1=1;AC1=2;DP4=0,1,2,34;MQ=59;FQ=-122;PV4=1,1,1,0.27 GT:PL:GQ 1/1:255,95,0:99 chr2 39281730 . G C 38.8 . DP=2;VDB=0.0173;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:70,6,0:10 chr2 39406572 . C A 89 . DP=28;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,24;MQ=59;FQ=-105 GT:PL:GQ 1/1:122,78,0:99 chr2 39440727 . G C 93 . DP=13;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,2,9;MQ=60;FQ=-60 GT:PL:GQ 1/1:126,33,0:63 chr2 39452861 . C T 112 . DP=17;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,16,1;MQ=60;FQ=-78 GT:PL:GQ 1/1:145,51,0:99 chr2 39494197 . C T 146 . DP=10;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:179,27,0:51 chr2 39507417 . T A 184 . DP=19;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,13,6;MQ=59;FQ=-84 GT:PL:GQ 1/1:217,57,0:99 chr2 39514136 . T C 22 . DP=4;VDB=0.0049;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:54,9,0:15 chr2 39526842 . A C 69 . DP=8;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:102,24,0:45 chr2 39553271 . A G 217 . DP=81;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,63,16;MQ=60;FQ=-265 GT:PL:GQ 1/1:250,238,0:99 chr2 39564620 . C A 119 . DP=12;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,8,3;MQ=60;FQ=-60 GT:PL:GQ 1/1:152,33,0:63 chr2 39570427 . T C 112 . DP=6;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:145,18,0:33 chr2 39583446 . A G 222 . DP=59;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,27,29;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr2 39944055 . G A 13.9 . DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr2 39993167 . T C 222 . DP=35;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,20,15;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr2 40006430 . A C 36.8 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:68,6,0:10 chr2 40392313 . G C 81.3 . DP=8;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:114,15,0:27 chr2 40402275 . G A 63.1 . DP=7;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:96,21,0:39 chr2 40403104 . A G 222 . DP=39;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,32,6;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr2 40404839 . C T 222 . DP=73;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,62,9;MQ=59;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr2 40655563 . Ccacacacacacacacacacacacacacaca Ccacacacacacacacacacacacacaca,Ccacacacacacacacacacacacaca 133 . INDEL;DP=10;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-58.5 GT:PL:GQ 1/1:255,105,81,200,0,194:45 chr2 42165909 . cgtgtgtgtgtgtgtgtg cgtgtgtgtgtgtgtg 36.5 . INDEL;DP=15;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,5,0,2;MQ=60;FQ=39.5;PV4=1,0.24,1,0.18 GT:PL:GQ 0/1:74,0,236:77 chr2 42491751 . C T 36.1 . DP=6;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:69,18,0:33 chr2 42492191 . A C 111 . DP=34;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,29;MQ=60;FQ=-126 GT:PL:GQ 1/1:144,99,0:99 chr2 42510018 . A G 136 . DP=72;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,15;MQ=60;FQ=-141 GT:PL:GQ 1/1:169,114,0:99 chr2 42511903 . A G 222 . DP=68;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,52;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr2 42515388 . A G 172 . DP=7;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,2;MQ=60;FQ=-48 GT:PL:GQ 1/1:205,21,0:39 chr2 42515437 . A G 93 . DP=9;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,4,5;MQ=60;FQ=-54 GT:PL:GQ 1/1:126,27,0:51 chr2 42531871 . G T 60 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:92,9,0:16 chr2 42544821 . C T 11.3 . DP=5;VDB=0.0141;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=14.1;PV4=1,0.001,1,1 GT:PL:GQ 0/1:41,0,57:43 chr2 42553210 . C A 16.1 . DP=43;VDB=0.0345;AF1=0.5;AC1=1;DP4=22,1,18,0;MQ=60;FQ=19.1;PV4=1,1.7e-29,1,0.37 GT:PL:GQ 0/1:46,0,222:49 chr2 42556022 . A T 45 . DP=13;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,2,5,1;MQ=60;FQ=48;PV4=1,2.5e-06,1,1 GT:PL:GQ 0/1:75,0,179:78 chr2 42560975 . A G 184 . DP=15;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,7;MQ=60;FQ=-72 GT:PL:GQ 1/1:217,45,0:87 chr2 42588195 . T C 184 . DP=56;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,42,12;MQ=60;FQ=-190 GT:PL:GQ 1/1:217,163,0:99 chr2 42719860 . GC GCC 214 . INDEL;DP=20;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,13,5;MQ=47;FQ=-88.5 GT:PL:GQ 1/1:255,54,0:99 chr2 42795954 . T C 64.5 . DP=4;VDB=0.0300;AF1=1;AC1=2;DP4=0,0,2,2;MQ=60;FQ=-39 GT:PL:GQ 1/1:97,12,0:21 chr2 42836516 . A G 38.1 . DP=7;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:71,18,0:33 chr2 42935961 . C T 222 . DP=25;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,22,3;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr2 42935979 . C T 160 . DP=25;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,20,5;MQ=59;FQ=-102 GT:PL:GQ 1/1:193,75,0:99 chr2 42990336 . T G 225 . DP=46;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,12,11,8;MQ=58;FQ=225;PV4=0.34,1,0.034,1 GT:PL:GQ 0/1:255,0,255:99 chr2 42996759 . Aagagagagagagagag Aagagagagagag 214 . INDEL;DP=13;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,7,5;MQ=39;FQ=-70.5 GT:PL:GQ 1/1:255,36,0:69 chr2 42996819 . G A 93 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,4,5,7;MQ=49;FQ=96;PV4=0.67,4.1e-11,0.42,1 GT:PL:GQ 0/1:123,0,198:99 chr2 42997614 . G A 91 . DP=42;VDB=0.0271;AF1=0.5;AC1=1;DP4=16,4,18,4;MQ=59;FQ=94;PV4=1,2.1e-09,1,1 GT:PL:GQ 0/1:121,0,234:99 chr2 43011169 . G T 21 . DP=7;VDB=0.0095;AF1=0.5;AC1=1;DP4=0,3,1,3;MQ=60;FQ=24;PV4=1,0.00017,1,0.5 GT:PL:GQ 0/1:51,0,81:54 chr2 43015612 . G T 222 . DP=45;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,36,8;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr2 43015719 . T C 222 . DP=81;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,31,44;MQ=59;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr2 43015757 . G A 222 . DP=53;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,15,37;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr2 43015814 . G A 129 . DP=19;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,7,0,11;MQ=60;FQ=102;PV4=1,0.13,1,0.19 GT:PL:GQ 0/1:159,0,129:99 chr2 43019730 . A G 47.3 . DP=5;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:80,15,0:27 chr2 43451998 . G A 4.13 . DP=8;VDB=0.0236;AF1=0.4998;AC1=1;DP4=4,0,4,0;MQ=60;FQ=6.2;PV4=1,0.00033,1,0.42 GT:PL:GQ 0/1:32,0,91:31 chr2 43452183 . A G 134 . DP=33;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,8,7,7;MQ=60;FQ=137;PV4=1,3.2e-08,1,0.45 GT:PL:GQ 0/1:164,0,255:99 chr2 43452334 . G A 178 . DP=74;VDB=0.0216;AF1=0.5;AC1=1;DP4=23,7,26,16;MQ=58;FQ=181;PV4=0.21,3.6e-22,1,0.4 GT:PL:GQ 0/1:208,0,255:99 chr2 43452618 . C T 125 . DP=28;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,9,4,11;MQ=60;FQ=128;PV4=1,0.0016,1,0.28 GT:PL:GQ 0/1:155,0,208:99 chr2 43452793 . C G 58 . DP=38;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,3,13,4;MQ=60;FQ=61;PV4=0.69,4e-16,1,1 GT:PL:GQ 0/1:88,0,236:91 chr2 43455063 . CCACA CCA 217 . INDEL;DP=51;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,14,10,11;MQ=60;FQ=217;PV4=1,0.0028,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 43514036 . G A 73 . DP=32;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,6,8,3;MQ=60;FQ=76;PV4=1,1.3e-13,1,0.13 GT:PL:GQ 0/1:103,0,255:99 chr2 43514226 . G A 14.2 . DP=27;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,16,0,7;MQ=60;FQ=17.1;PV4=0.55,4.8e-12,1,1 GT:PL:GQ 0/1:44,0,255:47 chr2 43519127 . T G 83 . DP=34;VDB=0.0053;AF1=0.5;AC1=1;DP4=13,1,18,2;MQ=60;FQ=86;PV4=1,8.1e-21,1,0.17 GT:PL:GQ 0/1:113,0,193:99 chr2 43902511 . G C 67 . DP=36;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,4,14,4;MQ=60;FQ=70;PV4=1,7.6e-14,1,0.12 GT:PL:GQ 0/1:97,0,233:99 chr2 43903066 . A G 225 . DP=135;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,46,24,36;MQ=60;FQ=225;PV4=0.86,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 43903354 . T C 131 . DP=119;VDB=0.0365;AF1=0.5;AC1=1;DP4=33,30,34,20;MQ=60;FQ=134;PV4=0.27,3.4e-33,1,1 GT:PL:GQ 0/1:161,0,255:99 chr2 43903483 . T C 176 . DP=49;VDB=0.0118;AF1=0.5;AC1=1;DP4=5,22,2,19;MQ=60;FQ=179;PV4=0.45,0.37,1,1 GT:PL:GQ 0/1:206,0,255:99 chr2 43947760 . T C 165 . DP=31;VDB=0.0359;AF1=0.5;AC1=1;DP4=8,11,8,3;MQ=60;FQ=168;PV4=0.14,1,1,0.0055 GT:PL:GQ 0/1:195,0,255:99 chr2 43953664 . A G 58 . DP=22;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,10,1,10;MQ=60;FQ=61;PV4=1,7.6e-10,1,1 GT:PL:GQ 0/1:88,0,153:91 chr2 43985940 . C A 54 . DP=6;VDB=0.0149;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=52.9;PV4=1,1,1,1 GT:PL:GQ 0/1:84,0,82:83 chr2 43991357 . A C 96 . DP=20;VDB=0.0244;AF1=0.5;AC1=1;DP4=10,0,7,0;MQ=60;FQ=99;PV4=1,0.21,1,0.33 GT:PL:GQ 0/1:126,0,162:99 chr2 44004010 . T C 89 . DP=35;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,11,3,16;MQ=60;FQ=92;PV4=0.42,8.9e-15,1,1 GT:PL:GQ 0/1:119,0,255:99 chr2 44010620 . G A 88 . DP=22;VDB=0.0216;AF1=0.5;AC1=1;DP4=5,7,6,4;MQ=60;FQ=91;PV4=0.67,1.1e-08,1,1 GT:PL:GQ 0/1:118,0,244:99 chr2 44021826 . T A 76 . DP=70;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,30,3,25;MQ=59;FQ=79;PV4=0.72,1.7e-25,0.4,1 GT:PL:GQ 0/1:106,0,255:99 chr2 44022970 . T C 56 . DP=26;VDB=0.0042;AF1=0.5;AC1=1;DP4=8,1,17,0;MQ=60;FQ=59;PV4=0.35,1.3e-18,1,0.43 GT:PL:GQ 0/1:86,0,167:89 chr2 44049872 . C T 149 . DP=24;VDB=0.0081;AF1=0.5;AC1=1;DP4=13,1,7,2;MQ=60;FQ=152;PV4=0.54,0.16,1,1 GT:PL:GQ 0/1:179,0,208:99 chr2 44065936 . T G 43 . DP=13;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,6,0,7;MQ=60;FQ=46;PV4=1,0.00019,1,1 GT:PL:GQ 0/1:73,0,105:76 chr2 44066174 . T G 46 . DP=12;VDB=0.0373;AF1=0.5;AC1=1;DP4=4,0,6,1;MQ=60;FQ=40.4;PV4=1,0.015,1,0.32 GT:PL:GQ 0/1:76,0,68:70 chr2 44071625 . C A 151 . DP=60;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,10,23,11;MQ=59;FQ=154;PV4=0.59,1.5e-14,1,1 GT:PL:GQ 0/1:181,0,255:99 chr2 44071639 . C T 76 . DP=60;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,10,23,11;MQ=59;FQ=79;PV4=0.58,1.3e-30,1,0.48 GT:PL:GQ 0/1:106,0,255:99 chr2 44071743 . A G 225 . DP=64;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,20,9,20;MQ=59;FQ=225;PV4=0.79,1,1,0.24 GT:PL:GQ 0/1:255,0,255:99 chr2 44079004 . T C 67 . DP=27;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,15,1,9;MQ=60;FQ=70;PV4=1,3.9e-07,1,0.32 GT:PL:GQ 0/1:97,0,198:99 chr2 44080096 . G A 80 . DP=21;VDB=0.0025;AF1=0.5;AC1=1;DP4=2,8,4,7;MQ=60;FQ=83;PV4=0.64,5.1e-08,1,1 GT:PL:GQ 0/1:110,0,195:99 chr2 44099433 . C A 149 . DP=89;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,35,7,39;MQ=60;FQ=152;PV4=1,4.8e-20,1,0.38 GT:PL:GQ 0/1:179,0,255:99 chr2 44101430 . T G 43.5 . DP=5;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:76,12,0:21 chr2 44101649 . GCCCCCC GCCCCCCCCC 214 . INDEL;DP=28;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,1,18;MQ=55;FQ=-91.5 GT:PL:GQ 1/1:255,57,0:99 chr2 44101711 . T C 4.13 . DP=5;VDB=0.0141;AF1=0.4998;AC1=1;DP4=0,3,0,2;MQ=60;FQ=6.2;PV4=1,0.0073,1,0.3 GT:PL:GQ 0/1:32,0,88:31 chr2 44102491 . C T 94 . DP=51;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,18,4,16;MQ=60;FQ=97;PV4=0.22,6.4e-14,1,0.5 GT:PL:GQ 0/1:124,0,255:99 chr2 44104925 . T C 222 . DP=71;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,31,39;MQ=59;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr2 44116836 . C T 225 . DP=91;VDB=0.0345;AF1=0.5;AC1=1;DP4=29,11,37,12;MQ=60;FQ=225;PV4=0.81,0.011,1,0.48 GT:PL:GQ 0/1:255,0,255:99 chr2 44123672 . TC T 189 . INDEL;DP=31;VDB=0.0033;AF1=0.5;AC1=1;DP4=12,1,16,2;MQ=60;FQ=158;PV4=1,1,1,0.14 GT:PL:GQ 0/1:227,0,193:99 chr2 44145374 . G T 225 . DP=85;VDB=0.0399;AF1=0.5;AC1=1;DP4=40,14,24,7;MQ=60;FQ=225;PV4=0.8,1,1,0.2 GT:PL:GQ 0/1:255,0,255:99 chr2 44152180 . G A 96 . DP=69;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,21,14,16;MQ=60;FQ=99;PV4=1,5e-34,0.13,1 GT:PL:GQ 0/1:126,0,255:99 chr2 44172444 . A C 155 . DP=101;VDB=0.0400;AF1=0.5;AC1=1;DP4=40,13,34,12;MQ=60;FQ=158;PV4=1,2e-38,1,1 GT:PL:GQ 0/1:185,0,255:99 chr2 44173422 . T G 78 . DP=51;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,26,2,21;MQ=59;FQ=81;PV4=1,7.6e-17,0.44,1 GT:PL:GQ 0/1:108,0,247:99 chr2 44187829 . A C 31 . DP=19;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,10,0,6;MQ=57;FQ=34;PV4=1,8.3e-06,0.33,0.065 GT:PL:GQ 0/1:61,0,190:64 chr2 44209477 . C T 162 . DP=60;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,12,13,17;MQ=60;FQ=165;PV4=0.43,2.6e-25,1,0.48 GT:PL:GQ 0/1:192,0,255:99 chr2 44502788 . A C 222 . DP=113;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,59,46;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 44512971 . G A 222 . DP=13;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,5,8;MQ=60;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr2 44531484 . C T 63 . DP=50;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,19,1,26;MQ=60;FQ=66;PV4=0.17,4.6e-21,1,0.47 GT:PL:GQ 0/1:93,0,255:96 chr2 44547574 . G A 159 . DP=92;VDB=0.0392;AF1=0.5;AC1=1;DP4=38,13,24,14;MQ=60;FQ=162;PV4=0.35,9.2e-31,0.12,1 GT:PL:GQ 0/1:189,0,255:99 chr2 44548613 . T C 122 . DP=12;VDB=0.0399;AF1=0.5;AC1=1;DP4=0,4,0,8;MQ=60;FQ=59;PV4=1,1,1,0.29 GT:PL:GQ 0/1:152,0,86:89 chr2 44556298 . T C 116 . DP=18;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,9,0,8;MQ=60;FQ=118;PV4=1,1,1,0.27 GT:PL:GQ 0/1:146,0,152:99 chr2 44569700 . AAATAAT AAAT 157 . INDEL;DP=11;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,3,0,7;MQ=53;FQ=89.5;PV4=1,4e-09,0.11,0.11 GT:PL:GQ 0/1:195,0,124:99 chr2 44570776 . C T 30 . DP=10;VDB=0.0080;AF1=0.5;AC1=1;DP4=7,0,3,0;MQ=60;FQ=33;PV4=1,0.082,1,1 GT:PL:GQ 0/1:60,0,140:63 chr2 44570804 . C A 34 . DP=35;VDB=0.0042;AF1=0.5;AC1=1;DP4=19,1,13,0;MQ=60;FQ=37;PV4=1,1.2e-15,1,1 GT:PL:GQ 0/1:64,0,218:67 chr2 44573658 . T C 16.9 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:48,6,0:10 chr2 44617324 . T A 98 . DP=33;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,28,2;MQ=60;FQ=-117 GT:PL:GQ 1/1:131,90,0:99 chr2 44622256 . A C 14.1 . DP=3;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:46,9,0:14 chr2 44858687 . T C 131 . DP=38;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,33,4;MQ=60;FQ=-138 GT:PL:GQ 1/1:164,111,0:99 chr2 45171842 . A G 222 . DP=94;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,51,33;MQ=59;FQ=-280 GT:PL:GQ 1/1:255,253,0:99 chr2 45647043 . C G 191 . DP=60;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,30,2,23;MQ=60;FQ=194;PV4=0.69,0.033,1,0.062 GT:PL:GQ 0/1:221,0,255:99 chr2 45773816 . C G 22 . DP=20;VDB=0.0099;AF1=0.5;AC1=1;DP4=13,0,6,0;MQ=60;FQ=25;PV4=1,1.4e-06,1,0.36 GT:PL:GQ 0/1:52,0,170:55 chr2 45774050 . G A 89 . DP=92;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,34,8,38;MQ=59;FQ=92;PV4=1,6.4e-36,1,0.45 GT:PL:GQ 0/1:119,0,255:99 chr2 45774548 . A C 225 . DP=53;VDB=0.0393;AF1=0.5;AC1=1;DP4=16,7,20,9;MQ=60;FQ=225;PV4=1,0.13,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 45780962 . C G 5.46 . DP=28;VDB=0.0164;AF1=0.4999;AC1=1;DP4=2,16,2,7;MQ=59;FQ=7.8;PV4=0.58,8.3e-17,1,1 GT:PL:GQ 0/1:34,0,243:34 chr2 45826526 . CT C 203 . INDEL;DP=59;VDB=0.0216;AF1=0.5;AC1=1;DP4=28,2,26,3;MQ=59;FQ=202;PV4=0.67,0.033,0.074,0.28 GT:PL:GQ 0/1:241,0,238:99 chr2 46203796 . G A,C 35 . DP=22;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,19;MQ=59;FQ=-69 GT:PL:GQ 1/1:105,79,37,72,0,54:73 chr2 46211658 . G A 82 . DP=58;VDB=0.0345;AF1=0.5;AC1=1;DP4=28,4,22,2;MQ=59;FQ=85;PV4=0.69,3.9e-19,0.42,0.47 GT:PL:GQ 0/1:112,0,255:99 chr2 46231525 . T A 45 . DP=12;VDB=0.0033;AF1=0.5;AC1=1;DP4=5,2,3,2;MQ=60;FQ=48;PV4=1,0.0006,1,0.17 GT:PL:GQ 0/1:75,0,162:78 chr2 46234568 . A G 225 . DP=77;VDB=0.0365;AF1=0.5;AC1=1;DP4=39,9,21,6;MQ=60;FQ=225;PV4=0.77,1,1,0.27 GT:PL:GQ 0/1:255,0,255:99 chr2 46584059 . T G 37.1 . DP=7;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:70,18,0:33 chr2 46603671 . C G 44 . DP=35;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,11,8,4;MQ=59;FQ=47;PV4=0.47,1e-13,0.35,1 GT:PL:GQ 0/1:74,0,255:77 chr2 46604972 . T C 34 . DP=48;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,9,17,1;MQ=59;FQ=37;PV4=0.064,4.8e-20,0.11,1 GT:PL:GQ 0/1:64,0,255:67 chr2 46605954 . G C 59 . DP=21;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,12,3,4;MQ=60;FQ=62;PV4=0.036,4.1e-06,1,0.071 GT:PL:GQ 0/1:89,0,168:92 chr2 46739157 . A G 222 . DP=47;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,32,13;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr2 46799852 . G T 58 . DP=15;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,14,1;MQ=60;FQ=-72 GT:PL:GQ 1/1:91,45,0:87 chr2 46818992 . C T 222 . DP=21;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,14,7;MQ=59;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr2 46819815 . A G 222 . DP=30;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,5,25;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr2 46839477 . T C 222 . DP=12;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,7,4;MQ=60;FQ=-60 GT:PL:GQ 1/1:255,33,0:63 chr2 46842410 . A G 47.1 . DP=10;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,7;MQ=57;FQ=-48 GT:PL:GQ 1/1:80,21,0:39 chr2 46845849 . A G 206 . DP=9;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,4,4;MQ=60;FQ=-51 GT:PL:GQ 1/1:239,24,0:45 chr2 46986416 . A G 222 . DP=79;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,43,33;MQ=57;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr2 46987300 . T G 105 . DP=11;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,5,6;MQ=60;FQ=-60 GT:PL:GQ 1/1:138,33,0:63 chr2 47045267 . G A 63 . DP=16;VDB=0.0081;AF1=0.5;AC1=1;DP4=3,0,12,1;MQ=60;FQ=31;PV4=1,6.4e-08,1,0.18 GT:PL:GQ 0/1:93,0,58:61 chr2 47045309 . C T 96 . DP=35;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,2,18,3;MQ=60;FQ=99;PV4=1,2.2e-14,1,1 GT:PL:GQ 0/1:126,0,204:99 chr2 47045321 . A G 73 . DP=45;VDB=0.0398;AF1=0.5;AC1=1;DP4=16,2,19,5;MQ=60;FQ=76;PV4=0.68,2.2e-19,1,1 GT:PL:GQ 0/1:103,0,217:99 chr2 47049409 . C T 44 . DP=17;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,6,0,11;MQ=59;FQ=47;PV4=1,2.7e-07,0.24,0.43 GT:PL:GQ 0/1:74,0,106:77 chr2 47049453 . A G 21.1 . DP=6;VDB=0.0014;AF1=0.5016;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-6.19;PV4=1,0.0035,1,1 GT:PL:GQ 0/1:51,0,22:25 chr2 47081196 . C G 8.65 . DP=4;VDB=0.0204;AF1=0.5012;AC1=1;DP4=1,0,0,3;MQ=60;FQ=-5.54;PV4=0.25,0.03,1,1 GT:PL:GQ 0/1:38,0,23:27 chr2 47083030 . atgt at 44.4 . INDEL;DP=3;VDB=0.0225;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:84,9,0:16 chr2 47185438 . G A 160 . DP=12;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:193,33,0:63 chr2 47251510 . G C 89 . DP=87;VDB=0.0322;AF1=0.5;AC1=1;DP4=43,14,20,9;MQ=59;FQ=92;PV4=0.61,8.9e-26,1,1 GT:PL:GQ 0/1:119,0,255:99 chr2 47251634 . T C 128 . DP=78;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,28,12,22;MQ=60;FQ=131;PV4=0.81,2.5e-20,0.14,1 GT:PL:GQ 0/1:158,0,255:99 chr2 47251698 . T C 123 . DP=13;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,5,0,8;MQ=60;FQ=73;PV4=1,1,1,1 GT:PL:GQ 0/1:153,0,100:99 chr2 47301029 . A G 102 . DP=8;VDB=0.0118;AF1=0.5006;AC1=1;DP4=0,2,0,6;MQ=57;FQ=-3.53;PV4=1,1,1,1 GT:PL:GQ 0/1:132,0,26:29 chr2 47348347 . C T 76 . DP=34;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,5,11,5;MQ=59;FQ=79;PV4=1,2.9e-14,1,1 GT:PL:GQ 0/1:106,0,255:99 chr2 47357458 . A G 225 . DP=73;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,29,6,27;MQ=59;FQ=225;PV4=0.57,0.34,0.45,1 GT:PL:GQ 0/1:255,0,255:99 chr2 47380203 . T C 122 . DP=12;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,2,10;MQ=60;FQ=-63 GT:PL:GQ 1/1:155,36,0:69 chr2 47382214 . C G 125 . DP=27;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,22,5;MQ=59;FQ=-108 GT:PL:GQ 1/1:158,81,0:99 chr2 47596853 . CGG CGGG 200 . INDEL;DP=31;VDB=0.0190;AF1=0.5;AC1=1;DP4=14,4,6,7;MQ=59;FQ=180;PV4=0.13,1,1,0.37 GT:PL:GQ 0/1:238,0,215:99 chr2 47601106 . T C 222 . DP=48;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,25;MQ=60;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr2 47601257 . T C 35 . DP=8;VDB=0.0287;AF1=0.5;AC1=1;DP4=0,4,1,3;MQ=60;FQ=38;PV4=1,0.14,1,1 GT:PL:GQ 0/1:65,0,86:68 chr2 47612224 . C T 88 . DP=20;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,2,10,2;MQ=60;FQ=91;PV4=1,1.5e-11,1,1 GT:PL:GQ 0/1:118,0,176:99 chr2 47613870 . T C 62 . DP=4;VDB=0.0161;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:94,9,0:16 chr2 47630550 . C G 74 . DP=8;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,2,6;MQ=60;FQ=-51 GT:PL:GQ 1/1:107,24,0:45 chr2 47672569 . G A 91.5 . DP=4;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:124,12,0:21 chr2 47690404 . T C 53 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,11,2,10;MQ=54;FQ=56;PV4=0.48,2.5e-10,0.0023,0.025 GT:PL:GQ 0/1:83,0,157:86 chr2 47690408 . A G 75 . DP=21;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,11,2,8;MQ=53;FQ=78;PV4=0.21,1.3e-05,0.00052,0.078 GT:PL:GQ 0/1:105,0,158:99 chr2 47690411 . T C 43 . DP=21;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,11,1,8;MQ=53;FQ=46;PV4=0.45,9.7e-09,0.00015,0.11 GT:PL:GQ 0/1:73,0,163:76 chr2 47693788 . A T 21 . DP=49;VDB=0.0271;AF1=0.5;AC1=1;DP4=25,10,11,3;MQ=59;FQ=24;PV4=0.73,3.9e-21,1,0.44 GT:PL:GQ 0/1:51,0,255:54 chr2 47693959 . G A 24 . DP=9;VDB=0.0161;AF1=0.5;AC1=1;DP4=0,5,0,3;MQ=57;FQ=27;PV4=1,1,0.11,1 GT:PL:GQ 0/1:54,0,108:57 chr2 47739551 . A G 109 . DP=30;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,7,6,13;MQ=60;FQ=112;PV4=1,8.9e-12,1,1 GT:PL:GQ 0/1:139,0,196:99 chr2 47748292 . A G 159 . DP=8;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,6;MQ=60;FQ=-51 GT:PL:GQ 1/1:192,24,0:45 chr2 48018030 . A G 69 . DP=43;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,3,15,3;MQ=59;FQ=72;PV4=1,9.9e-25,0.049,1 GT:PL:GQ 0/1:99,0,255:99 chr2 48018314 . T A 53 . DP=12;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,6,0,6;MQ=60;FQ=56;PV4=1,2.1e-05,1,0.39 GT:PL:GQ 0/1:83,0,131:86 chr2 48023115 . T C 225 . DP=58;VDB=0.0398;AF1=0.5;AC1=1;DP4=16,20,8,12;MQ=59;FQ=225;PV4=0.79,0.025,0.46,1 GT:PL:GQ 0/1:255,0,255:99 chr2 48025764 . C T 68 . DP=14;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,3,5,0;MQ=58;FQ=71;PV4=0.26,1,1,1 GT:PL:GQ 0/1:98,0,197:99 chr2 48030458 . G C 100 . DP=5;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:133,15,0:27 chr2 48030838 . A T 27 . DP=44;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,20,3,11;MQ=59;FQ=30;PV4=0.65,1.6e-21,0.033,0.32 GT:PL:GQ 0/1:57,0,255:60 chr2 48032874 . ACTATCTATCT ACTATCT 169 . INDEL;DP=18;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,8,2,3;MQ=60;FQ=172;PV4=0.56,8.4e-05,1,0.017 GT:PL:GQ 0/1:207,0,255:99 chr2 48032937 . T C 35.5 . DP=4;VDB=0.0126;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:68,12,0:21 chr2 48033272 . ATTTTTGTTTTAATTCCTTTTTTGTTTTAATTCCTTT ATTTTTGTTTTAATTCCTTT 16.6 . INDEL;DP=7;VDB=0.0033;AF1=0.5;AC1=1;DP4=4,0,3,0;MQ=49;FQ=19.5;PV4=1,1,0,1 GT:PL:GQ 0/1:54,0,167:57 chr2 48033546 . CTT CTTT 217 . INDEL;DP=119;VDB=0.0365;AF1=0.5;AC1=1;DP4=30,28,30,29;MQ=59;FQ=217;PV4=1,1,1,0.16 GT:PL:GQ 0/1:255,0,255:99 chr2 48040904 . GAAAAAA GAAAAAAA 90.5 . INDEL;DP=45;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,33,9;MQ=60;FQ=-161 GT:PL:GQ 1/1:131,126,0:99 chr2 48063241 . G C 32.8 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:64,6,0:10 chr2 48586426 . ta t 49.5 . INDEL;DP=8;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=46.3;PV4=1,0.39,1,0.012 GT:PL:GQ 0/1:87,0,82:84 chr2 48602252 . C T 203 . DP=110;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,50,55;MQ=60;FQ=-282 GT:PL:GQ 1/1:236,255,0:99 chr2 48681868 . C G 126 . DP=101;VDB=0.0398;AF1=0.5;AC1=1;DP4=21,39,15,24;MQ=59;FQ=129;PV4=0.83,7.7e-23,1,0.38 GT:PL:GQ 0/1:156,0,255:99 chr2 48685417 . T C 15.1 . DP=6;VDB=0.0287;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=17.9;PV4=1,0.001,1,0.39 GT:PL:GQ 0/1:45,0,58:48 chr2 48687135 . G C 225 . DP=35;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,5,16,6;MQ=58;FQ=195;PV4=0.46,0.36,1,1 GT:PL:GQ 0/1:255,0,222:99 chr2 48713729 . T C 53 . DP=18;VDB=0.0244;AF1=0.5;AC1=1;DP4=12,0,5,0;MQ=60;FQ=56;PV4=1,0.002,1,0.11 GT:PL:GQ 0/1:83,0,176:86 chr2 48722994 . G C 182 . DP=20;VDB=0.0042;AF1=0.5;AC1=1;DP4=2,6,2,9;MQ=58;FQ=147;PV4=1,1,0.11,0.43 GT:PL:GQ 0/1:212,0,174:99 chr2 48725563 . G A 3.54 . DP=7;VDB=0.0060;AF1=0.4998;AC1=1;DP4=4,0,3,0;MQ=60;FQ=5.47;PV4=1,0.0022,1,0.24 GT:PL:GQ 0/1:31,0,96:30 chr2 48734576 . G A 190 . DP=48;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,6,41;MQ=60;FQ=-168 GT:PL:GQ 1/1:223,141,0:99 chr2 48734598 . A C 64 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,17,1,10;MQ=60;FQ=67;PV4=0.39,1.8e-11,1,1 GT:PL:GQ 0/1:94,0,183:97 chr2 48738687 . G C 60 . DP=19;VDB=0.0025;AF1=0.5;AC1=1;DP4=1,9,1,8;MQ=60;FQ=63;PV4=1,1.3e-09,1,1 GT:PL:GQ 0/1:90,0,189:93 chr2 48756682 . C G 170 . DP=15;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,3,2,8;MQ=60;FQ=92;PV4=0.56,0.39,1,0.43 GT:PL:GQ 0/1:200,0,119:99 chr2 48807796 . A C 188 . DP=82;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,58,17;MQ=60;FQ=-253 GT:PL:GQ 1/1:221,226,0:99 chr2 48807976 . T C 162 . DP=88;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,41,41;MQ=60;FQ=-274 GT:PL:GQ 1/1:195,247,0:99 chr2 48808152 . G C 222 . DP=112;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,55,52;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 48808594 . C T 222 . DP=172;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,76,91;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 48808882 . T A 222 . DP=58;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,22,35;MQ=58;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr2 48808898 . C T 222 . DP=56;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,29;MQ=58;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr2 48809593 . G T 214 . DP=47;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,17;MQ=60;FQ=-165 GT:PL:GQ 1/1:247,138,0:99 chr2 48809756 . T C 100 . DP=12;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:133,36,0:69 chr2 48844968 . C G 225 . DP=51;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,8,18,6;MQ=60;FQ=225;PV4=0.76,0.016,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 48898798 . T A 172 . DP=54;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,23,28;MQ=60;FQ=-181 GT:PL:GQ 1/1:205,154,0:99 chr2 48906625 . T C 203 . DP=27;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,11,16;MQ=60;FQ=-108 GT:PL:GQ 1/1:236,81,0:99 chr2 48915871 . A G 225 . DP=129;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,44,11,48;MQ=60;FQ=225;PV4=0.031,0.28,1,0.1 GT:PL:GQ 0/1:255,0,255:99 chr2 48921375 . T C 123 . DP=47;VDB=0.0373;AF1=0.5;AC1=1;DP4=18,5,12,8;MQ=60;FQ=126;PV4=0.32,1.4e-18,1,1 GT:PL:GQ 0/1:153,0,255:99 chr2 48925691 . C G 71 . DP=9;VDB=0.0199;AF1=0.5;AC1=1;DP4=5,0,4,0;MQ=60;FQ=73.8;PV4=1,1,1,1 GT:PL:GQ 0/1:101,0,115:99 chr2 48925746 . C T 99 . DP=18;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,13,2;MQ=60;FQ=-72 GT:PL:GQ 1/1:132,45,0:87 chr2 48948802 . T C 156 . DP=17;VDB=0.0008;AF1=0.5;AC1=1;DP4=7,1,6,2;MQ=60;FQ=146;PV4=1,0.14,1,0.17 GT:PL:GQ 0/1:186,0,173:99 chr2 48948856 . A G 225 . DP=42;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,9,14,7;MQ=60;FQ=225;PV4=0.53,0.32,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 48952701 . C G 7.59 . DP=3;VDB=0.0125;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr2 48956417 . C T 169 . DP=50;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,14,10,17;MQ=60;FQ=172;PV4=1,4e-15,1,1 GT:PL:GQ 0/1:199,0,255:99 chr2 49189921 . C T 220 . DP=48;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,13;MQ=60;FQ=-165 GT:PL:GQ 1/1:253,138,0:99 chr2 49191041 . C T 180 . DP=31;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,5,24;MQ=59;FQ=-114 GT:PL:GQ 1/1:213,87,0:99 chr2 49216284 . C T 29 . DP=10;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,4,0,6;MQ=58;FQ=32;PV4=1,5.2e-05,0.22,0.24 GT:PL:GQ 0/1:59,0,93:62 chr2 49217916 . T G 31 . DP=7;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,2,0,5;MQ=57;FQ=24.5;PV4=1,5.1e-05,0.29,0.3 GT:PL:GQ 0/1:61,0,52:55 chr2 49241849 . G A 87 . DP=7;VDB=0.0019;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=17.1;PV4=1,1,1,1 GT:PL:GQ 0/1:117,0,44:47 chr2 49510173 . A C 176 . DP=122;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,52,64;MQ=59;FQ=-282;PV4=0.45,0.095,1,0.27 GT:PL:GQ 1/1:209,255,0:99 chr2 50201110 . A G 222 . DP=51;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,36,13;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr2 50201383 . G A 58 . DP=9;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=60;PV4=1,0.24,1,0.27 GT:PL:GQ 0/1:88,0,94:90 chr2 50246249 . T G 54 . DP=10;VDB=0.0000;AF1=0.5;AC1=1;DP4=4,1,5,0;MQ=53;FQ=57;PV4=1,0.054,0.02,1 GT:PL:GQ 0/1:84,0,125:87 chr2 50280338 . G A 163 . DP=13;VDB=0.0033;AF1=1;AC1=2;DP4=0,1,11,1;MQ=60;FQ=-28;PV4=0.15,0.39,1,0.39 GT:PL:GQ 1/1:192,1,0:4 chr2 50434741 . C T 95 . DP=13;VDB=0.0216;AF1=0.5;AC1=1;DP4=5,2,6,0;MQ=60;FQ=98;PV4=0.46,1,1,1 GT:PL:GQ 0/1:125,0,173:99 chr2 50434759 . C G 169 . DP=21;VDB=0.0359;AF1=0.5;AC1=1;DP4=9,2,8,2;MQ=59;FQ=172;PV4=1,0.36,1,0.27 GT:PL:GQ 0/1:199,0,210:99 chr2 50574485 . A G 59 . DP=39;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,16,2,18;MQ=59;FQ=62;PV4=1,3.1e-16,0.17,1 GT:PL:GQ 0/1:89,0,222:92 chr2 50692560 . A G 172 . DP=28;VDB=0.0398;AF1=0.5;AC1=1;DP4=11,5,8,3;MQ=60;FQ=175;PV4=1,0.065,1,0.092 GT:PL:GQ 0/1:202,0,255:99 chr2 50692819 . T G 23.5 . DP=6;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:56,12,0:21 chr2 50693504 . AACA AA 217 . INDEL;DP=24;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,3,12,3;MQ=58;FQ=217;PV4=0.62,3.1e-17,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 50733860 . A G 55.1 . DP=9;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:88,21,0:39 chr2 50758657 . T C 68 . DP=11;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:101,33,0:63 chr2 50966283 . C T 123 . DP=6;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:156,15,0:27 chr2 51125707 . C G 32 . DP=12;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,1,3,3;MQ=58;FQ=35;PV4=0.55,7.7e-07,1,0.16 GT:PL:GQ 0/1:62,0,146:65 chr2 51149072 . T C 225 . DP=38;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,8,10,10;MQ=60;FQ=225;PV4=0.76,0.29,1,0.44 GT:PL:GQ 0/1:255,0,255:99 chr2 51149102 . T C 189 . DP=24;VDB=0.0140;AF1=0.5;AC1=1;DP4=5,9,4,6;MQ=60;FQ=192;PV4=1,1,1,1 GT:PL:GQ 0/1:219,0,255:99 chr2 51150462 . A T 131 . DP=13;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,2,5,2;MQ=60;FQ=125;PV4=1,0.077,1,1 GT:PL:GQ 0/1:161,0,153:99 chr2 51206342 . C G 31 . DP=27;VDB=0.0190;AF1=0.5;AC1=1;DP4=15,1,10,1;MQ=60;FQ=34;PV4=1,9.7e-16,1,1 GT:PL:GQ 0/1:61,0,211:64 chr2 53831866 . G A 134 . DP=16;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,2,9,1;MQ=60;FQ=102;PV4=0.52,0.39,1,0.17 GT:PL:GQ 0/1:164,0,129:99 chr2 53920931 . G A 65 . DP=12;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:98,27,0:51 chr2 53927313 . TAC TACAC 217 . INDEL;DP=18;VDB=0.0033;AF1=0.5;AC1=1;DP4=6,0,12,0;MQ=60;FQ=126;PV4=1,1,1,0.08 GT:PL:GQ 0/1:255,0,161:99 chr2 53943696 . C T 225 . DP=27;VDB=0.0190;AF1=0.5;AC1=1;DP4=9,2,10,4;MQ=60;FQ=169;PV4=0.66,1,1,1 GT:PL:GQ 0/1:255,0,196:99 chr2 53990532 . C T 222 . DP=34;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,30,3;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr2 54014303 . A G 5.46 . DP=7;VDB=0.0049;AF1=0.4999;AC1=1;DP4=3,0,3,0;MQ=60;FQ=7.8;PV4=1,0.00012,1,0.096 GT:PL:GQ 0/1:34,0,82:34 chr2 54014558 . G T 139 . DP=99;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,34,9,41;MQ=60;FQ=142;PV4=0.33,4.6e-28,1,1 GT:PL:GQ 0/1:169,0,255:99 chr2 54023247 . Gttttttttttt Gtttttttttt 4.45 . INDEL;DP=9;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-55.5 GT:PL:GQ 1/1:43,21,0:20 chr2 54024626 . C T 3.01 . DP=20;VDB=0.0164;AF1=0.4997;AC1=1;DP4=10,5,3,0;MQ=60;FQ=4.77;PV4=0.52,0.034,1,1 GT:PL:GQ 0/1:30,0,255:28 chr2 54035508 . G C 225 . DP=65;VDB=0.0271;AF1=0.5;AC1=1;DP4=16,20,11,16;MQ=60;FQ=225;PV4=0.8,0.18,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 54035650 . G A 19.1 . DP=7;VDB=0.0041;AF1=0.5;AC1=1;DP4=1,2,0,4;MQ=60;FQ=22;PV4=0.43,0.002,1,1 GT:PL:GQ 0/1:49,0,82:52 chr2 54041983 . G T 110 . DP=40;VDB=0.0190;AF1=0.5;AC1=1;DP4=17,6,13,4;MQ=59;FQ=113;PV4=1,1e-08,0.42,1 GT:PL:GQ 0/1:140,0,255:99 chr2 54081923 . T G 48 . DP=19;VDB=0.0042;AF1=0.5;AC1=1;DP4=4,10,0,5;MQ=59;FQ=51;PV4=0.53,0.36,1,0.054 GT:PL:GQ 0/1:78,0,248:81 chr2 54114967 . G A 65 . DP=56;VDB=0.0190;AF1=0.5;AC1=1;DP4=23,5,21,4;MQ=60;FQ=68;PV4=1,3.5e-15,1,1 GT:PL:GQ 0/1:95,0,255:98 chr2 54115904 . A G 146 . DP=62;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,15,18,10;MQ=60;FQ=149;PV4=0.28,3.3e-24,1,1 GT:PL:GQ 0/1:176,0,255:99 chr2 54116003 . C T 148 . DP=27;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,11,0,15;MQ=59;FQ=129;PV4=1,0.48,1,1 GT:PL:GQ 0/1:178,0,156:99 chr2 54120025 . A T 174 . DP=71;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,20,19,20;MQ=60;FQ=177;PV4=0.23,7.8e-29,1,1 GT:PL:GQ 0/1:204,0,255:99 chr2 54120820 . G A 182 . DP=19;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,11,7;MQ=60;FQ=-81 GT:PL:GQ 1/1:215,54,0:99 chr2 54122956 . A G 174 . DP=18;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81 GT:PL:GQ 1/1:207,54,0:99 chr2 54125495 . T C 11.3 . DP=22;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,12,0,8;MQ=60;FQ=14.2;PV4=0.52,7.6e-09,1,0.13 GT:PL:GQ 0/1:41,0,227:43 chr2 54127041 . C T 187 . DP=71;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,33,33;MQ=60;FQ=-226 GT:PL:GQ 1/1:220,199,0:99 chr2 54131154 . C T 74 . DP=63;VDB=0.0322;AF1=0.5;AC1=1;DP4=31,8,20,4;MQ=60;FQ=77;PV4=1,9e-20,1,0.014 GT:PL:GQ 0/1:104,0,255:99 chr2 54135429 . G C 106 . DP=14;VDB=0.0066;AF1=0.5;AC1=1;DP4=5,2,7,0;MQ=60;FQ=109;PV4=0.46,0.41,1,0.17 GT:PL:GQ 0/1:136,0,175:99 chr2 54137136 . A G 122 . DP=10;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,1,5,1;MQ=60;FQ=83;PV4=1,0.41,1,0.16 GT:PL:GQ 0/1:152,0,110:99 chr2 54146263 . G C 3.54 . DP=9;VDB=0.0094;AF1=0.4998;AC1=1;DP4=5,2,1,1;MQ=60;FQ=5.47;PV4=1,0.0014,1,1 GT:PL:GQ 0/1:31,0,183:30 chr2 54150079 . A T 3.98 . DP=2;VDB=0.0173;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr2 54150237 . A G 48 . DP=26;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,8,5,4;MQ=60;FQ=51;PV4=1,9.6e-14,1,1 GT:PL:GQ 0/1:78,0,255:81 chr2 54152927 . T C 42 . DP=9;VDB=0.0020;AF1=0.5;AC1=1;DP4=0,6,0,3;MQ=60;FQ=45;PV4=1,1,1,1 GT:PL:GQ 0/1:72,0,119:75 chr2 54155240 . A G 225 . DP=50;VDB=0.0298;AF1=0.5;AC1=1;DP4=18,2,22,6;MQ=60;FQ=193;PV4=0.44,1,0.2,1 GT:PL:GQ 0/1:255,0,220:99 chr2 54158957 . C T 34 . DP=35;VDB=0.0164;AF1=0.5;AC1=1;DP4=17,2,15,0;MQ=60;FQ=37;PV4=0.49,4.1e-20,1,1 GT:PL:GQ 0/1:64,0,242:67 chr2 54159999 . G A 61 . DP=44;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,24,0,20;MQ=60;FQ=64;PV4=1,2.5e-17,1,0.43 GT:PL:GQ 0/1:91,0,185:94 chr2 54161885 . G T 19.1 . DP=16;VDB=0.0008;AF1=0.5;AC1=1;DP4=1,10,0,5;MQ=60;FQ=22;PV4=1,3.1e-07,1,1 GT:PL:GQ 0/1:49,0,197:52 chr2 54163245 . A G 139 . DP=49;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,12,10,11;MQ=59;FQ=142;PV4=0.77,1.5e-17,0.055,1 GT:PL:GQ 0/1:169,0,255:99 chr2 54197829 . C A 52 . DP=18;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,7,1,5;MQ=60;FQ=55;PV4=0.6,0.00084,1,1 GT:PL:GQ 0/1:82,0,228:85 chr2 54342955 . G A 53 . DP=20;VDB=0.0325;AF1=0.5;AC1=1;DP4=5,8,5,2;MQ=60;FQ=56;PV4=0.35,3.1e-07,1,0.43 GT:PL:GQ 0/1:83,0,243:86 chr2 54342974 . A T 6.2 . DP=13;VDB=0.0309;AF1=0.4999;AC1=1;DP4=2,7,4,0;MQ=60;FQ=8.65;PV4=0.021,3.5e-05,1,1 GT:PL:GQ 0/1:35,0,191:36 chr2 54343012 . C A 128 . DP=9;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,7;MQ=60;FQ=-54 GT:PL:GQ 1/1:161,27,0:51 chr2 54362437 . T C 13.2 . DP=4;VDB=0.0060;AF1=0.5005;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-3.06;PV4=1,0.0029,1,1 GT:PL:GQ 0/1:43,0,27:30 chr2 54362645 . T C 32 . DP=37;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,3,2,8;MQ=59;FQ=35;PV4=0.14,6.1e-11,0.19,1 GT:PL:GQ 0/1:62,0,189:65 chr2 54362726 . A G 75 . DP=22;VDB=0.0359;AF1=0.5;AC1=1;DP4=3,7,1,11;MQ=58;FQ=78;PV4=0.29,1.4e-10,0.096,0.024 GT:PL:GQ 0/1:105,0,218:99 chr2 54369120 . ttgtgtgtgtgtgtgtgtgtgtgtgtgtgt ttgtgtgtgtgtgtgtgtgtgtgtgt 45.2 . INDEL;DP=6;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,0,2;MQ=47;FQ=-40.5 GT:PL:GQ 1/1:84,6,0:10 chr2 54483272 . C A 162 . DP=55;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,17,8,24;MQ=60;FQ=165;PV4=0.74,7.5e-09,0.21,1 GT:PL:GQ 0/1:192,0,232:99 chr2 54494370 . A G 102 . DP=21;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,19,1;MQ=59;FQ=-87 GT:PL:GQ 1/1:135,60,0:99 chr2 54587378 . C G 47 . DP=57;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,20,15,3;MQ=59;FQ=50;PV4=0.0099,1e-23,0.49,0.4 GT:PL:GQ 0/1:77,0,255:80 chr2 54587596 . C T 86 . DP=41;VDB=0.0393;AF1=0.5;AC1=1;DP4=8,12,4,15;MQ=59;FQ=89;PV4=0.3,7.8e-16,1,0.069 GT:PL:GQ 0/1:116,0,255:99 chr2 54587659 . G C 88 . DP=26;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,8,3,9;MQ=59;FQ=91;PV4=0.67,1.4e-09,1,0.31 GT:PL:GQ 0/1:118,0,255:99 chr2 54786065 . A T 151 . DP=39;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,13,6,14;MQ=58;FQ=154;PV4=1,0.00023,1,1 GT:PL:GQ 0/1:181,0,254:99 chr2 54839240 . G A 87 . DP=42;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,6,11,7;MQ=60;FQ=90;PV4=0.5,3.4e-10,1,0.14 GT:PL:GQ 0/1:117,0,255:99 chr2 54839276 . A G 225 . DP=57;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,9,13,12;MQ=60;FQ=225;PV4=0.26,1,1,0.22 GT:PL:GQ 0/1:255,0,255:99 chr2 54844911 . G A 133 . DP=27;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,11,0,12;MQ=60;FQ=136;PV4=0.22,1,1,1 GT:PL:GQ 0/1:163,0,232:99 chr2 54845490 . C A 9.52 . DP=9;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=60;FQ=12.3;PV4=1,4.9e-06,1,1 GT:PL:GQ 0/1:39,0,110:41 chr2 54850743 . A G 129 . DP=52;VDB=0.0244;AF1=0.5;AC1=1;DP4=15,15,11,11;MQ=60;FQ=132;PV4=1,7.5e-12,1,1 GT:PL:GQ 0/1:159,0,255:99 chr2 54855137 . T C 164 . DP=39;VDB=0.0164;AF1=0.5;AC1=1;DP4=19,5,12,2;MQ=59;FQ=167;PV4=1,0.47,0.097,1 GT:PL:GQ 0/1:194,0,255:99 chr2 54857011 . G A 225 . DP=63;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,19,16,9;MQ=59;FQ=225;PV4=0.2,1,0.41,1 GT:PL:GQ 0/1:255,0,255:99 chr2 54858439 . C T 173 . DP=88;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,22,22,24;MQ=60;FQ=176;PV4=0.83,4.7e-31,1,1 GT:PL:GQ 0/1:203,0,255:99 chr2 54872482 . C T 174 . DP=50;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,16,13,13;MQ=60;FQ=177;PV4=0.14,6.3e-13,1,1 GT:PL:GQ 0/1:204,0,255:99 chr2 54882291 . C A 162 . DP=118;VDB=0.0345;AF1=0.5;AC1=1;DP4=35,26,27,25;MQ=60;FQ=165;PV4=0.58,5e-40,1,1 GT:PL:GQ 0/1:192,0,255:99 chr2 54887228 . C T 143 . DP=106;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,40,17,31;MQ=60;FQ=146;PV4=0.68,2.4e-40,1,1 GT:PL:GQ 0/1:173,0,255:99 chr2 54891891 . C A 34 . DP=23;VDB=0.0033;AF1=0.5;AC1=1;DP4=2,11,0,9;MQ=59;FQ=37;PV4=0.49,3.8e-07,1,1 GT:PL:GQ 0/1:64,0,208:67 chr2 55040426 . A G 222 . DP=78;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,45;MQ=60;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr2 55071101 . Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 18.5 . INDEL;DP=7;VDB=0.0033;AF1=0.5;AC1=1;DP4=4,0,2,0;MQ=60;FQ=21.5;PV4=1,2.8e-05,1,0.19 GT:PL:GQ 0/1:56,0,138:59 chr2 55091029 . C T 222 . DP=34;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,18;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr2 55093784 . T A 83 . DP=14;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:116,42,0:81 chr2 55098821 . C T 215 . DP=35;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,11,3,21;MQ=60;FQ=103;PV4=0.54,0.49,1,0.47 GT:PL:GQ 0/1:245,0,130:99 chr2 55121930 . C G 163 . DP=12;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:196,36,0:69 chr2 55186229 . T C 157 . DP=24;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,17,7;MQ=57;FQ=-99 GT:PL:GQ 1/1:190,72,0:99 chr2 55186394 . A C 222 . DP=26;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,6,18;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr2 55187297 . AGGGG AGGGGG 139 . INDEL;DP=36;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,32,4;MQ=60;FQ=-143 GT:PL:GQ 1/1:180,108,0:99 chr2 55189685 . C T 225 . DP=64;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,10,19,14;MQ=60;FQ=225;PV4=0.6,0.016,0.17,0.31 GT:PL:GQ 0/1:255,0,255:99 chr2 55200800 . T G 222 . DP=24;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,2,18;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr2 55201038 . C T 222 . DP=18;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,15;MQ=60;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr2 55214618 . A C 131 . DP=16;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,13,3;MQ=60;FQ=-75 GT:PL:GQ 1/1:164,48,0:93 chr2 55214912 . C G 72 . DP=8;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:105,24,0:45 chr2 55404794 . G A 175 . DP=36;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,9,12,2;MQ=59;FQ=178;PV4=0.14,0.029,0.11,0.32 GT:PL:GQ 0/1:205,0,255:99 chr2 55404925 . C T 169 . DP=18;VDB=0.0380;AF1=0.5;AC1=1;DP4=0,7,1,10;MQ=59;FQ=99;PV4=1,1,1,0.34 GT:PL:GQ 0/1:199,0,126:99 chr2 55407754 . C T 222 . DP=88;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,29,57;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 55407935 . G A 31.3 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:64,15,0:27 chr2 55436934 . G A 132 . DP=93;VDB=0.0400;AF1=0.5;AC1=1;DP4=23,26,29,12;MQ=59;FQ=135;PV4=0.032,1.9e-38,0.45,0.35 GT:PL:GQ 0/1:162,0,255:99 chr2 55439963 . C A 222 . DP=31;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,5,25;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr2 55470115 . C T 141 . DP=11;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,9,0;MQ=53;FQ=-54 GT:PL:GQ 1/1:174,27,0:51 chr2 55471407 . T C 221 . DP=22;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,1,21;MQ=59;FQ=-93 GT:PL:GQ 1/1:254,66,0:99 chr2 55473371 . A G 182 . DP=35;VDB=0.0011;AF1=0.5;AC1=1;DP4=16,1,16,1;MQ=59;FQ=182;PV4=1,0.35,0.16,1 GT:PL:GQ 0/1:212,0,213:99 chr2 55473386 . CAT C 214 . INDEL;DP=52;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,45,7;MQ=59;FQ=-192 GT:PL:GQ 1/1:255,157,0:99 chr2 55473681 . A C 36.5 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:69,12,0:21 chr2 55489629 . T C 88 . DP=27;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,25;MQ=60;FQ=-102 GT:PL:GQ 1/1:121,75,0:99 chr2 55490819 . G T 222 . DP=69;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,51,15;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr2 55518742 . T C 18.1 . DP=28;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,4,9,1;MQ=60;FQ=21;PV4=0.62,5.1e-16,1,1 GT:PL:GQ 0/1:48,0,255:51 chr2 55522422 . A G 222 . DP=64;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,31,31;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr2 55527108 . G A 141 . DP=65;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,24,10,18;MQ=60;FQ=144;PV4=1,4.3e-17,1,1 GT:PL:GQ 0/1:171,0,255:99 chr2 55528257 . A C 167 . DP=14;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,6;MQ=60;FQ=-69 GT:PL:GQ 1/1:200,42,0:81 chr2 55555593 . T C 76 . DP=7;VDB=0.0007;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=51;PV4=1,1,1,0.29 GT:PL:GQ 0/1:106,0,78:81 chr2 55561896 . A G 35 . DP=23;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,7,2,12;MQ=60;FQ=38;PV4=1,1.1e-15,1,0.25 GT:PL:GQ 0/1:65,0,157:68 chr2 55563777 . T C 3.54 . DP=6;VDB=0.0080;AF1=0.4998;AC1=1;DP4=3,0,2,0;MQ=60;FQ=5.47;PV4=1,0.1,1,0.35 GT:PL:GQ 0/1:31,0,72:30 chr2 55573533 . C T 68 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:100,9,0:16 chr2 55576585 . A C 42 . DP=91;VDB=0.0271;AF1=0.5;AC1=1;DP4=46,4,35,1;MQ=60;FQ=45;PV4=0.39,1.9e-45,1,1 GT:PL:GQ 0/1:72,0,255:75 chr2 55576634 . C T 225 . DP=160;VDB=0.0380;AF1=0.5;AC1=1;DP4=64,27,44,20;MQ=60;FQ=225;PV4=0.86,0.045,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 55599655 . G A 57 . DP=32;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,8,6,9;MQ=60;FQ=60;PV4=0.5,2.2e-18,1,0.23 GT:PL:GQ 0/1:87,0,255:90 chr2 55760940 . G T 222 . DP=45;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,38,6;MQ=59;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr2 55762957 . C T 152 . DP=10;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:185,30,0:57 chr2 55764754 . AATATGAATACATA AATA 197 . INDEL;DP=21;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,12;MQ=32;FQ=-82.5 GT:PL:GQ 1/1:238,48,0:93 chr2 55771050 . C G 95 . DP=29;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,29,0;MQ=60;FQ=-114 GT:PL:GQ 1/1:128,87,0:99 chr2 55771161 . A G 222 . DP=113;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,58,51;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 55805440 . T C 222 . DP=15;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,3,11;MQ=60;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr2 55812073 . T G 222 . DP=40;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,34,2;MQ=60;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr2 55844445 . T C 107 . DP=19;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,17;MQ=57;FQ=-78 GT:PL:GQ 1/1:140,51,0:99 chr2 55883317 . G T 125 . DP=16;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,9,6;MQ=58;FQ=-72 GT:PL:GQ 1/1:158,45,0:87 chr2 55889062 . G A 170 . DP=9;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:203,24,0:45 chr2 55894247 . T C 222 . DP=31;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,16,15;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr2 55899228 . A T 163 . DP=19;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,4,12;MQ=59;FQ=-75 GT:PL:GQ 1/1:196,48,0:93 chr2 55900283 . A G 59 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:91,9,0:16 chr2 55912120 . T C 165 . DP=26;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,4,20;MQ=60;FQ=-99 GT:PL:GQ 1/1:198,72,0:99 chr2 55914621 . T C 53.1 . DP=6;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:86,18,0:33 chr2 55920663 . T C 3.01 . DP=5;VDB=0.0194;AF1=0.4997;AC1=1;DP4=3,0,2,0;MQ=60;FQ=4.77;PV4=1,0.0029,1,0.057 GT:PL:GQ 0/1:30,0,85:28 chr2 56098272 . G A 64 . DP=68;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,29,9,20;MQ=59;FQ=67;PV4=0.41,3.2e-26,0.43,1 GT:PL:GQ 0/1:94,0,255:97 chr2 56216052 . G A 222 . DP=62;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,38,21;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr2 56411817 . C T 103 . DP=11;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,2;MQ=60;FQ=-57 GT:PL:GQ 1/1:136,30,0:57 chr2 56412009 . C T 4.77 . DP=9;VDB=0.0022;AF1=0.4999;AC1=1;DP4=1,6,1,1;MQ=60;FQ=6.99;PV4=0.42,0.38,1,0.0045 GT:PL:GQ 0/1:33,0,139:33 chr2 56611543 . CAAGAAGAA CAAGAAGAAGAA 217 . INDEL;DP=64;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,22,8,23;MQ=58;FQ=217;PV4=0.52,1,0.03,0.37 GT:PL:GQ 0/1:255,0,255:99 chr2 58275666 . G A 222 . DP=39;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,20;MQ=59;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr2 58316814 . A G 221 . DP=28;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,5,8,5;MQ=60;FQ=220;PV4=1,1,1,0.47 GT:PL:GQ 0/1:251,0,249:99 chr2 58387000 . C T 16.1 . DP=4;VDB=0.0116;AF1=0.5016;AC1=1;DP4=0,1,0,3;MQ=60;FQ=-6.2;PV4=1,0.012,1,0.32 GT:PL:GQ 0/1:46,0,22:25 chr2 58388696 . A G 141 . DP=58;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,11,17,12;MQ=60;FQ=144;PV4=1,1e-21,1,1 GT:PL:GQ 0/1:171,0,255:99 chr2 58449041 . CAAA CAA 97.5 . INDEL;DP=20;VDB=0.0053;AF1=0.5;AC1=1;DP4=7,0,13,0;MQ=59;FQ=61.5;PV4=1,0.16,1,1 GT:PL:GQ 0/1:135,0,96:99 chr2 60614572 . G A 225 . DP=47;VDB=0.0384;AF1=0.5;AC1=1;DP4=16,9,13,8;MQ=59;FQ=225;PV4=1,0.42,0.45,0.028 GT:PL:GQ 0/1:255,0,255:99 chr2 60687959 . A G 139 . DP=61;VDB=0.0398;AF1=0.5;AC1=1;DP4=16,15,13,12;MQ=60;FQ=142;PV4=1,7.4e-09,1,1 GT:PL:GQ 0/1:169,0,255:99 chr2 60768978 . G A 38.5 . DP=4;VDB=0.0059;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:71,12,0:21 chr2 60773035 . T G 55 . DP=34;VDB=0.0216;AF1=0.5;AC1=1;DP4=19,1,12,1;MQ=60;FQ=58;PV4=1,4.7e-16,1,1 GT:PL:GQ 0/1:85,0,216:88 chr2 61007782 . A G 91 . DP=47;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,42,3;MQ=60;FQ=-162 GT:PL:GQ 1/1:124,135,0:99 chr2 61008036 . C T 11.3 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:43,9,0:13 chr2 61009909 . C T 222 . DP=24;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,14,8;MQ=58;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr2 61021349 . A G 78 . DP=9;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:111,27,0:51 chr2 61121492 . G A 92.1 . DP=7;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-48 GT:PL:GQ 1/1:125,21,0:39 chr2 61128284 . T C 6.02 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr2 61172303 . T C 58 . DP=36;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,18,1,16;MQ=60;FQ=61;PV4=0.49,2.1e-11,1,0.48 GT:PL:GQ 0/1:88,0,177:91 chr2 61175312 . T C 172 . DP=89;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,36,49;MQ=60;FQ=-282 GT:PL:GQ 1/1:205,255,0:99 chr2 61180288 . C T 222 . DP=28;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,6,20;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr2 61198863 . C A 6.02 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr2 61235855 . C A 65 . DP=9;VDB=0.0025;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=67.5;PV4=1,0.0013,1,0.18 GT:PL:GQ 0/1:95,0,104:97 chr2 61245551 . G C 104 . DP=18;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,10,0,7;MQ=60;FQ=107;PV4=1,1,1,1 GT:PL:GQ 0/1:134,0,163:99 chr2 61304002 . A G 25 . DP=7;VDB=0.0008;AF1=0.5;AC1=1;DP4=2,1,4,0;MQ=60;FQ=28;PV4=0.43,0.00075,1,1 GT:PL:GQ 0/1:55,0,88:58 chr2 61304271 . A G 79 . DP=66;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,21,9,26;MQ=60;FQ=82;PV4=1,2.8e-31,1,1 GT:PL:GQ 0/1:109,0,255:99 chr2 61349446 . G A 39.8 . DP=2;VDB=0.0169;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:71,6,0:10 chr2 61384906 . T C 13.2 . DP=5;VDB=0.0177;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=15.9;PV4=1,0.0055,1,1 GT:PL:GQ 0/1:43,0,56:45 chr2 61385100 . G A 110 . DP=25;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,8,3,11;MQ=60;FQ=113;PV4=1,4.2e-07,1,0.18 GT:PL:GQ 0/1:140,0,210:99 chr2 61385105 . G C 123 . DP=25;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,8,3,11;MQ=60;FQ=126;PV4=1,1e-07,1,0.27 GT:PL:GQ 0/1:153,0,209:99 chr2 61385248 . A G 4.77 . DP=3;VDB=0.0125;AF1=0.5002;AC1=1;DP4=0,1,1,1;MQ=60;FQ=3.3;PV4=1,0.094,1,0.33 GT:PL:GQ 0/1:33,0,29:31 chr2 61389609 . G C 225 . DP=103;VDB=0.0400;AF1=0.5;AC1=1;DP4=46,18,28,7;MQ=60;FQ=225;PV4=0.47,1,0.33,1 GT:PL:GQ 0/1:255,0,255:99 chr2 61389737 . T G 225 . DP=61;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,25,4,23;MQ=59;FQ=225;PV4=1,0.24,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 61389799 . G A 54 . DP=13;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,7,0,4;MQ=58;FQ=57;PV4=1,0.035,1,0.32 GT:PL:GQ 0/1:84,0,137:87 chr2 61406438 . A G 26 . DP=3;VDB=0.0180;AF1=0.5008;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-4.12;PV4=1,1,1,1 GT:PL:GQ 0/1:56,0,25:28 chr2 61412559 . C T 13 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr2 61413037 . TATTAATT TATT 30.5 . INDEL;DP=8;VDB=0.0393;AF1=0.5;AC1=1;DP4=3,2,1,1;MQ=57;FQ=33.5;PV4=1,0.13,0.059,1 GT:PL:GQ 0/1:68,0,241:71 chr2 61413723 . A G 222 . DP=57;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,37,17;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr2 61415492 . A G 97 . DP=12;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,8,2;MQ=60;FQ=-57 GT:PL:GQ 1/1:130,30,0:57 chr2 61417617 . A G 222 . DP=58;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,31,25;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr2 61420140 . T C 169 . DP=33;VDB=0.0380;AF1=0.5;AC1=1;DP4=0,16,1,13;MQ=58;FQ=149;PV4=0.47,1,1,0.13 GT:PL:GQ 0/1:199,0,176:99 chr2 61462904 . G C 58 . DP=4;VDB=0.0060;AF1=0.5003;AC1=1;DP4=1,0,3,0;MQ=60;FQ=4.13;PV4=1,0.065,1,0.087 GT:PL:GQ 0/1:88,0,29:32 chr2 61468761 . T C 110 . DP=46;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,15,11,10;MQ=59;FQ=113;PV4=0.38,6.2e-21,0.15,1 GT:PL:GQ 0/1:140,0,255:99 chr2 61522123 . T C 135 . DP=20;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,14,5;MQ=59;FQ=-84 GT:PL:GQ 1/1:168,57,0:99 chr2 61566536 . T C 153 . DP=52;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,11,15,20;MQ=60;FQ=156;PV4=0.76,4.5e-21,0.25,0.23 GT:PL:GQ 0/1:183,0,253:99 chr2 61575308 . A G 222 . DP=128;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,65,57;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 61576517 . G A 222 . DP=35;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,8,24;MQ=60;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr2 61715159 . GACTAC GAC 83.5 . INDEL;DP=16;VDB=0.0066;AF1=0.5;AC1=1;DP4=11,0,5,0;MQ=56;FQ=86.5;PV4=1,8.4e-15,0.00098,1 GT:PL:GQ 0/1:121,0,255:99 chr2 61722519 . GAAAAA GAAAAAA 62.5 . INDEL;DP=10;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-64.5 GT:PL:GQ 1/1:103,30,0:57 chr2 61729258 . A G 205 . DP=25;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,10;MQ=60;FQ=-102 GT:PL:GQ 1/1:238,75,0:99 chr2 61729268 . T C 222 . DP=29;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,18,10;MQ=60;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr2 61749690 . C T 222 . DP=32;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,19,12;MQ=59;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr2 61749716 . C T 213 . DP=28;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,17;MQ=59;FQ=-108 GT:PL:GQ 1/1:246,81,0:99 chr2 62053546 . CGCTGC CGC 157 . INDEL;DP=23;VDB=0.0140;AF1=0.5;AC1=1;DP4=11,6,4,2;MQ=57;FQ=160;PV4=1,3.5e-11,0.047,1 GT:PL:GQ 0/1:195,0,255:99 chr2 62066927 . A G 222 . DP=58;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,26,27;MQ=59;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr2 62069358 . T C 161 . DP=87;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,25,25,18;MQ=59;FQ=164;PV4=0.079,2.5e-30,1,1 GT:PL:GQ 0/1:191,0,255:99 chr2 62069528 . C T 96 . DP=36;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,13,2,17;MQ=60;FQ=99;PV4=0.64,1.9e-13,1,1 GT:PL:GQ 0/1:126,0,243:99 chr2 62074097 . G A 79 . DP=11;VDB=0.0393;AF1=0.5;AC1=1;DP4=0,3,1,7;MQ=58;FQ=41;PV4=1,4e-05,0.28,0.15 GT:PL:GQ 0/1:109,0,68:71 chr2 62074140 . aaca aACaca 118 . INDEL;DP=7;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,7;MQ=57;FQ=-55.5 GT:PL:GQ 1/1:158,21,0:39 chr2 62081012 . A C 222 . DP=63;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,29,33;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr2 62081217 . A G 3.98 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr2 62095994 . A G 46.1 . DP=6;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,6;MQ=56;FQ=-45 GT:PL:GQ 1/1:79,18,0:33 chr2 62107376 . T TC 47.5 . INDEL;DP=12;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-70.5 GT:PL:GQ 1/1:88,36,0:69 chr2 62107632 . G A 82 . DP=11;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,5,0,5;MQ=60;FQ=84.4;PV4=1,0.0038,1,0.1 GT:PL:GQ 0/1:112,0,120:99 chr2 62112221 . G GA 33.5 . INDEL;DP=63;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,16,7,15;MQ=58;FQ=32.4;PV4=1,0.48,0.038,1 GT:PL:GQ 0/1:71,0,69:70 chr2 62362995 . T C 225 . DP=75;VDB=0.0365;AF1=0.5;AC1=1;DP4=30,6,27,11;MQ=60;FQ=225;PV4=0.27,0.4,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 62450631 . A G 105 . DP=18;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,7,1,5;MQ=60;FQ=108;PV4=1,1,1,1 GT:PL:GQ 0/1:135,0,210:99 chr2 63401973 . G A 26 . DP=18;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,5,0,11;MQ=60;FQ=29;PV4=0.35,1.2e-09,1,0.26 GT:PL:GQ 0/1:56,0,133:59 chr2 63486429 . C T 135 . DP=34;VDB=0.0140;AF1=0.5;AC1=1;DP4=11,5,17,0;MQ=59;FQ=138;PV4=0.018,0.027,0.17,1 GT:PL:GQ 0/1:165,0,255:99 chr2 63540523 . A T 10.4 . DP=11;VDB=0.0006;AF1=0.5;AC1=1;DP4=1,5,0,5;MQ=60;FQ=13.2;PV4=1,5.5e-07,1,1 GT:PL:GQ 0/1:40,0,147:42 chr2 63605772 . A G 9.55 . DP=7;VDB=0.0019;AF1=0.5031;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-8.66;PV4=1,0.00028,1,0.4 GT:PL:GQ 0/1:39,0,19:23 chr2 63609017 . A T 56 . DP=21;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,3,8,1;MQ=59;FQ=59;PV4=0.6,4.9e-09,1,1 GT:PL:GQ 0/1:86,0,236:89 chr2 63631830 . T C 66 . DP=28;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,10,2,12;MQ=59;FQ=69;PV4=0.65,4.9e-08,1,0.47 GT:PL:GQ 0/1:96,0,222:99 chr2 63631889 . A C 10.4 . DP=9;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=60;FQ=13.2;PV4=1,7.9e-06,1,0.083 GT:PL:GQ 0/1:40,0,76:42 chr2 63720210 . A G 33 . DP=3;VDB=0.0099;AF1=0.5008;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-4.12;PV4=1,1,1,1 GT:PL:GQ 0/1:63,0,25:28 chr2 63798333 . C T 50 . DP=15;VDB=0.0164;AF1=0.5;AC1=1;DP4=8,0,6,1;MQ=60;FQ=53;PV4=0.47,1.6e-09,1,0.39 GT:PL:GQ 0/1:80,0,145:83 chr2 63824810 . T A 33 . DP=5;VDB=0.0014;AF1=0.501;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-4.76;PV4=1,0.0051,1,0.34 GT:PL:GQ 0/1:63,0,24:27 chr2 64069311 . G C 35 . DP=53;VDB=0.0006;AF1=0.5;AC1=1;DP4=23,6,20,2;MQ=60;FQ=38;PV4=0.44,4.9e-18,0.13,0.21 GT:PL:GQ 0/1:65,0,255:68 chr2 64069732 . G A 122 . DP=30;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,3,24;MQ=60;FQ=-108 GT:PL:GQ 1/1:155,81,0:99 chr2 64082619 . G C 32 . DP=13;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,7,2,4;MQ=60;FQ=35;PV4=0.19,3e-07,0.15,0.2 GT:PL:GQ 0/1:62,0,135:65 chr2 64084005 . G A 161 . DP=35;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,20,1,14;MQ=60;FQ=158;PV4=0.43,0.034,1,0.46 GT:PL:GQ 0/1:191,0,186:99 chr2 64085114 . G A 204 . DP=65;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,39;MQ=60;FQ=-217 GT:PL:GQ 1/1:237,190,0:99 chr2 64126765 . A G 133 . DP=44;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,19,4,18;MQ=58;FQ=136;PV4=0.66,3.5e-19,1,0.16 GT:PL:GQ 0/1:163,0,238:99 chr2 64126775 . C A 37 . DP=39;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,19,1,16;MQ=58;FQ=40;PV4=1,2.3e-17,1,1 GT:PL:GQ 0/1:67,0,225:70 chr2 64139901 . A T 13.9 . DP=2;VDB=0.0171;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr2 64140301 . A T 162 . DP=18;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,15,3;MQ=60;FQ=-81 GT:PL:GQ 1/1:195,54,0:99 chr2 64143884 . T C 8.44 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr2 64682364 . A C 145 . DP=27;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,23,3;MQ=60;FQ=-105 GT:PL:GQ 1/1:178,78,0:99 chr2 65131523 . A T 104 . DP=49;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,7,16,9;MQ=60;FQ=107;PV4=1,1.9e-19,1,1 GT:PL:GQ 0/1:134,0,255:99 chr2 65131732 . G A 103 . DP=27;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,11,0,10;MQ=59;FQ=106;PV4=0.12,0.049,1,1 GT:PL:GQ 0/1:133,0,255:99 chr2 65132050 . G A 113 . DP=84;VDB=0.0298;AF1=0.5;AC1=1;DP4=30,10,30,10;MQ=60;FQ=116;PV4=1,2.6e-39,0.16,0.41 GT:PL:GQ 0/1:143,0,255:99 chr2 65159596 . G A 92 . DP=40;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,17,1,19;MQ=60;FQ=95;PV4=0.6,8.5e-11,1,1 GT:PL:GQ 0/1:122,0,248:99 chr2 65217089 . G C 104 . DP=22;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,5,7,6;MQ=60;FQ=107;PV4=1,1.7e-08,1,1 GT:PL:GQ 0/1:134,0,189:99 chr2 65230946 . A T 119 . DP=18;VDB=0.0033;AF1=0.5;AC1=1;DP4=9,2,6,1;MQ=60;FQ=122;PV4=1,1,1,1 GT:PL:GQ 0/1:149,0,211:99 chr2 65245534 . G C 51 . DP=14;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,9,0,4;MQ=60;FQ=54;PV4=1,0.42,1,1 GT:PL:GQ 0/1:81,0,148:84 chr2 65315880 . G C 222 . DP=32;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,31;MQ=60;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr2 65315903 . G A 11.3 . DP=20;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,12,0,7;MQ=60;FQ=14.2;PV4=1,1.9e-10,1,1 GT:PL:GQ 0/1:41,0,165:43 chr2 65318021 . T C 32 . DP=11;VDB=0.0019;AF1=0.5;AC1=1;DP4=6,0,5,0;MQ=58;FQ=35;PV4=1,0.0013,1,1 GT:PL:GQ 0/1:62,0,118:65 chr2 65318052 . C G 196 . DP=33;VDB=0.0099;AF1=0.5;AC1=1;DP4=16,1,13,2;MQ=59;FQ=183;PV4=0.59,1,1,0.18 GT:PL:GQ 0/1:226,0,210:99 chr2 65356904 . T C 56 . DP=15;VDB=0.0066;AF1=0.5;AC1=1;DP4=7,0,7,1;MQ=60;FQ=59;PV4=1,3.7e-07,1,0.28 GT:PL:GQ 0/1:86,0,135:89 chr2 65473930 . AAAATTTTC A 147 . INDEL;DP=25;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,1,23;MQ=29;FQ=-107 GT:PL:GQ 1/1:188,72,0:99 chr2 65478371 . T A 48.1 . DP=7;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:81,21,0:39 chr2 65481008 . A C 212 . DP=62;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,23,38;MQ=60;FQ=-211 GT:PL:GQ 1/1:245,184,0:99 chr2 65488538 . G A 152 . DP=36;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,8,28;MQ=60;FQ=-135 GT:PL:GQ 1/1:185,108,0:99 chr2 65495573 . ac aCc 214 . INDEL;DP=21;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,15,6;MQ=50;FQ=-97.5 GT:PL:GQ 1/1:255,63,0:99 chr2 65495887 . G A 222 . DP=99;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,36,60;MQ=56;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 65496018 . C G 112 . DP=19;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,18;MQ=58;FQ=-84 GT:PL:GQ 1/1:145,57,0:99 chr2 65540905 . C G 190 . DP=107;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,36,58;MQ=60;FQ=-282 GT:PL:GQ 1/1:223,255,0:99 chr2 65559027 . A G 222 . DP=38;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,27,9;MQ=60;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr2 65561392 . C T 130 . DP=124;VDB=0.0380;AF1=0.5;AC1=1;DP4=38,21,37,25;MQ=59;FQ=133;PV4=0.71,1.2e-48,0.096,1 GT:PL:GQ 0/1:160,0,255:99 chr2 65571889 . G C 122 . DP=85;VDB=0.0244;AF1=0.5;AC1=1;DP4=21,24,22,15;MQ=60;FQ=125;PV4=0.27,8e-28,1,1 GT:PL:GQ 0/1:152,0,255:99 chr2 65571997 . A G 111 . DP=26;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,10,3,10;MQ=60;FQ=114;PV4=1,5e-05,1,1 GT:PL:GQ 0/1:141,0,189:99 chr2 65604914 . A G 67.1 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:100,18,0:33 chr2 66665146 . T C 65 . DP=49;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,21,4,18;MQ=60;FQ=68;PV4=1,1.8e-22,1,1 GT:PL:GQ 0/1:95,0,255:98 chr2 66795906 . T C 225 . DP=126;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,44,16,44;MQ=60;FQ=225;PV4=0.84,0.25,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 66798282 . G T 67.1 . DP=8;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:100,18,0:33 chr2 67637196 . G A 132 . DP=104;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,41,10,40;MQ=60;FQ=135;PV4=1,1.4e-49,0.16,0.47 GT:PL:GQ 0/1:162,0,255:99 chr2 68352515 . A C 30 . DP=21;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,9,1,7;MQ=60;FQ=33;PV4=1,1.6e-10,1,0.4 GT:PL:GQ 0/1:60,0,204:63 chr2 68358341 . T C 153 . DP=15;VDB=0.0025;AF1=0.5;AC1=1;DP4=5,2,6,2;MQ=60;FQ=144;PV4=1,0.29,0.18,0.031 GT:PL:GQ 0/1:183,0,171:99 chr2 68358653 . T C 24 . DP=7;VDB=0.0080;AF1=0.5;AC1=1;DP4=0,4,1,1;MQ=60;FQ=27;PV4=0.33,1,1,0.36 GT:PL:GQ 0/1:54,0,94:57 chr2 68364478 . T C 225 . DP=38;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,10,10,7;MQ=60;FQ=225;PV4=0.74,0.037,1,0.1 GT:PL:GQ 0/1:255,0,255:99 chr2 68385097 . A G 183 . DP=49;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,28,16;MQ=59;FQ=-159 GT:PL:GQ 1/1:216,132,0:99 chr2 68388823 . A G 80 . DP=106;VDB=0.0400;AF1=0.5;AC1=1;DP4=32,24,31,17;MQ=59;FQ=83;PV4=0.55,1.1e-48,1,0.033 GT:PL:GQ 0/1:110,0,255:99 chr2 68389481 . CTT C 217 . INDEL;DP=66;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,22,7,31;MQ=59;FQ=217;PV4=1,0.031,1,0.19 GT:PL:GQ 0/1:255,0,255:99 chr2 68389557 . TTATATATATATATATA TTATATATATATATA 36.5 . INDEL;DP=20;VDB=0.0343;AF1=0.5;AC1=1;DP4=3,8,3,0;MQ=60;FQ=39.5;PV4=0.055,0.05,1,0.22 GT:PL:GQ 0/1:74,0,255:77 chr2 68415767 . G A 225 . DP=71;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,28,4,28;MQ=59;FQ=225;PV4=0.15,1,0.44,1 GT:PL:GQ 0/1:255,0,255:99 chr2 68444171 . c cGCAG 203 . INDEL;DP=30;VDB=0.0322;AF1=0.5064;AC1=1;DP4=2,0,8,0;MQ=60;FQ=-18.6;PV4=1,1,1,0.24 GT:PL:GQ 0/1:240,0,16:19 chr2 68592584 . T C 177 . DP=44;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,14,30;MQ=60;FQ=-159 GT:PL:GQ 1/1:210,132,0:99 chr2 68607947 . G T 225 . DP=94;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,20,27,20;MQ=60;FQ=225;PV4=1,0.039,0.16,0.35 GT:PL:GQ 0/1:255,0,255:99 chr2 68613710 . G A 204 . DP=39;VDB=0.0216;AF1=0.5;AC1=1;DP4=14,7,15,3;MQ=59;FQ=207;PV4=0.29,0.31,1,0.47 GT:PL:GQ 0/1:234,0,255:99 chr2 68615438 . AGGGG AGGGGG 13.8 . INDEL;DP=4;VDB=0.0002;AF1=0.5128;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-21.6;PV4=1,1,1,1 GT:PL:GQ 0/1:51,0,13:16 chr2 68615654 . T C 57 . DP=108;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,28,19,13;MQ=59;FQ=60;PV4=0.38,3.1e-41,1,0.034 GT:PL:GQ 0/1:87,0,255:90 chr2 68620410 . T A 43 . DP=61;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,20,7,19;MQ=60;FQ=46;PV4=0.41,1.6e-36,0.13,1 GT:PL:GQ 0/1:73,0,255:76 chr2 68620463 . G A 207 . DP=33;VDB=0.0164;AF1=0.5;AC1=1;DP4=5,10,2,16;MQ=59;FQ=210;PV4=0.2,1,1,1 GT:PL:GQ 0/1:237,0,255:99 chr2 68621338 . G T 114 . DP=41;VDB=0.0359;AF1=0.5;AC1=1;DP4=4,16,6,15;MQ=59;FQ=117;PV4=0.72,4.5e-19,0.17,0.19 GT:PL:GQ 0/1:144,0,255:99 chr2 68621427 . G A 58 . DP=17;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,8,1,8;MQ=60;FQ=61;PV4=1,7.2e-10,1,1 GT:PL:GQ 0/1:88,0,142:91 chr2 68622914 . G A 175 . DP=44;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,8,33;MQ=60;FQ=-150 GT:PL:GQ 1/1:208,123,0:99 chr2 68622952 . G C 158 . DP=25;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,9,1,12;MQ=60;FQ=157;PV4=0.58,1,1,1 GT:PL:GQ 0/1:188,0,187:99 chr2 68882468 . T C 153 . DP=100;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,36,20,32;MQ=60;FQ=156;PV4=0.074,4.2e-36,0.18,0.37 GT:PL:GQ 0/1:183,0,255:99 chr2 69002760 . C T 222 . DP=54;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,30,19;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr2 69034249 . T C 98 . DP=20;VDB=0.0066;AF1=0.5;AC1=1;DP4=13,0,6,1;MQ=60;FQ=101;PV4=0.35,0.081,1,0.45 GT:PL:GQ 0/1:128,0,174:99 chr2 69034286 . A G 217 . DP=46;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,4,24,2;MQ=60;FQ=212;PV4=0.19,1,1,0.47 GT:PL:GQ 0/1:247,0,240:99 chr2 69043539 . G C 106 . DP=5;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:138,12,0:21 chr2 69046164 . C A 8.64 . DP=12;VDB=0.0014;AF1=0.5;AC1=1;DP4=7,0,4,0;MQ=60;FQ=11.3;PV4=1,3.5e-10,1,1 GT:PL:GQ 0/1:38,0,147:40 chr2 69177971 . C T 225 . DP=45;VDB=0.0216;AF1=0.5;AC1=1;DP4=7,18,8,9;MQ=59;FQ=225;PV4=0.33,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 69180161 . T A 69.1 . DP=7;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:102,21,0:39 chr2 69201894 . C T 43 . DP=38;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,18,0,17;MQ=60;FQ=46;PV4=1,5.1e-12,1,1 GT:PL:GQ 0/1:73,0,206:76 chr2 69298817 . T C 145 . DP=34;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,3,9,9;MQ=60;FQ=148;PV4=0.15,2.9e-16,1,0.42 GT:PL:GQ 0/1:175,0,242:99 chr2 69317925 . G A 193 . DP=104;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,57,43;MQ=60;FQ=-282 GT:PL:GQ 1/1:226,255,0:99 chr2 69318129 . T G 29.3 . DP=5;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:62,15,0:27 chr2 69351621 . T A 106 . DP=16;VDB=0.0011;AF1=0.5;AC1=1;DP4=7,0,7,0;MQ=60;FQ=99.5;PV4=1,1,1,1 GT:PL:GQ 0/1:136,0,127:99 chr2 69553374 . AG A 23.5 . INDEL;DP=11;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,0,0,3;MQ=60;FQ=6.53;PV4=0.1,1,1,1 GT:PL:GQ 0/1:61,0,40:43 chr2 69565563 . TAAAA TAAA 175 . INDEL;DP=78;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,67,9;MQ=60;FQ=-264 GT:PL:GQ 1/1:216,229,0:99 chr2 69573029 . T C 222 . DP=32;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,11;MQ=59;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr2 69586293 . A C 131 . DP=9;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,4,4;MQ=60;FQ=-51 GT:PL:GQ 1/1:164,24,0:45 chr2 69614161 . A G 222 . DP=36;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,16;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr2 69646504 . G A 91.5 . DP=4;VDB=0.0017;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:124,12,0:21 chr2 69650730 . G A 52 . DP=14;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,1,7,2;MQ=58;FQ=39.9;PV4=1,2.8e-07,1,1 GT:PL:GQ 0/1:82,0,67:70 chr2 69693747 . T C 35.8 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:67,6,0:10 chr2 69709919 . A G 177 . DP=56;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,42;MQ=60;FQ=-196 GT:PL:GQ 1/1:210,169,0:99 chr2 69736561 . A G 124 . DP=31;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,7,3,17;MQ=60;FQ=127;PV4=0.37,4.2e-05,1,0.19 GT:PL:GQ 0/1:154,0,167:99 chr2 69741801 . C T 222 . DP=46;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,28,17;MQ=60;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr2 69741854 . T G 199 . DP=58;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,28;MQ=60;FQ=-193 GT:PL:GQ 1/1:232,166,0:99 chr2 69746296 . C T 186 . DP=47;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,7,14,4;MQ=60;FQ=189;PV4=1,0.023,1,1 GT:PL:GQ 0/1:216,0,255:99 chr2 69771484 . C T 217 . DP=69;VDB=0.0216;AF1=0.5;AC1=1;DP4=28,8,27,3;MQ=60;FQ=219;PV4=0.32,0.008,1,1 GT:PL:GQ 0/1:247,0,255:99 chr2 70031797 . C G 98 . DP=32;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,14,2,14;MQ=60;FQ=101;PV4=1,2.9e-11,1,1 GT:PL:GQ 0/1:128,0,223:99 chr2 70039677 . A C 10.4 . DP=6;VDB=0.0089;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=13.2;PV4=1,0.033,1,1 GT:PL:GQ 0/1:40,0,71:42 chr2 70046255 . G C 27 . DP=5;VDB=0.0174;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=30;PV4=1,1,1,1 GT:PL:GQ 0/1:57,0,82:60 chr2 70068258 . CTTTTTT CTTTTT 10.5 . INDEL;DP=12;VDB=0.0099;AF1=0.5939;AC1=1;DP4=0,2,0,7;MQ=60;FQ=-29.5;PV4=1,0.00014,1,1 GT:PL:GQ 0/1:47,0,5:8 chr2 70098808 . A G 24 . DP=11;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,3,2,2;MQ=60;FQ=27;PV4=1,0.0018,1,1 GT:PL:GQ 0/1:54,0,152:57 chr2 70120909 . GAAA GAA 21.3 . INDEL;DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:60,6,0:10 chr2 70121197 . T C 22 . DP=10;VDB=0.0143;AF1=0.5;AC1=1;DP4=0,6,1,3;MQ=58;FQ=25;PV4=0.4,7.2e-05,1,1 GT:PL:GQ 0/1:52,0,119:55 chr2 70162534 . T G 28 . DP=37;VDB=0.0298;AF1=0.5;AC1=1;DP4=18,5,11,3;MQ=60;FQ=31;PV4=1,2.7e-21,1,1 GT:PL:GQ 0/1:58,0,255:61 chr2 70164034 . T C 129 . DP=50;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,3,28,5;MQ=60;FQ=132;PV4=0.69,7.7e-20,0.25,0.34 GT:PL:GQ 0/1:159,0,208:99 chr2 70188676 . T C 225 . DP=43;VDB=0.0393;AF1=0.5;AC1=1;DP4=3,16,7,14;MQ=59;FQ=210;PV4=0.28,1,0.17,0.15 GT:PL:GQ 0/1:255,0,237:99 chr2 70485320 . C T 77 . DP=10;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,2,3,3;MQ=60;FQ=57;PV4=1,0.033,1,0.44 GT:PL:GQ 0/1:107,0,84:87 chr2 70502811 . TTCT TTCTGTCT 217 . INDEL;DP=42;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,10,7,17;MQ=58;FQ=217;PV4=1,1,0.45,0.028 GT:PL:GQ 0/1:255,0,255:99 chr2 70528601 . T C 225 . DP=74;VDB=0.0398;AF1=0.5;AC1=1;DP4=22,15,17,16;MQ=60;FQ=225;PV4=0.63,1,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr2 70676639 . A G 220 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,0,14,3;MQ=60;FQ=109;PV4=0.27,1,1,1 GT:PL:GQ 0/1:250,0,136:99 chr2 70905099 . T G 136 . DP=8;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,8;MQ=57;FQ=-51 GT:PL:GQ 1/1:169,24,0:45 chr2 70933659 . T A 14.2 . DP=9;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=60;FQ=17.1;PV4=1,7.3e-05,1,1 GT:PL:GQ 0/1:44,0,117:47 chr2 70995129 . G A 103 . DP=21;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,4,3,12;MQ=60;FQ=87.9;PV4=0.6,1.8e-05,1,1 GT:PL:GQ 0/1:133,0,115:99 chr2 71004397 . G C 21.1 . DP=3;VDB=0.0180;AF1=0.504;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-9.5;PV4=1,1,1,1 GT:PL:GQ 0/1:51,0,18:21 chr2 71012604 . G A 225 . DP=72;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,16,15,12;MQ=60;FQ=225;PV4=0.62,0.14,0.11,1 GT:PL:GQ 0/1:255,0,255:99 chr2 71012734 . C G 225 . DP=42;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,19,6,12;MQ=60;FQ=225;PV4=0.48,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 71043461 . C T 225 . DP=124;VDB=0.0365;AF1=0.5;AC1=1;DP4=27,35,25,34;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 71044211 . C T 144 . DP=50;VDB=0.0393;AF1=0.5;AC1=1;DP4=8,16,7,19;MQ=60;FQ=147;PV4=0.76,8.5e-16,0.17,0.0053 GT:PL:GQ 0/1:174,0,255:99 chr2 71058226 . C T 163 . DP=23;VDB=0.0359;AF1=0.5;AC1=1;DP4=9,3,8,2;MQ=58;FQ=166;PV4=1,0.14,1,0.038 GT:PL:GQ 0/1:193,0,231:99 chr2 71058835 . A G 211 . DP=32;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,1,14,3;MQ=60;FQ=156;PV4=0.61,1,1,0.49 GT:PL:GQ 0/1:241,0,183:99 chr2 71061108 . G A 93 . DP=36;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,12,7,11;MQ=59;FQ=96;PV4=1,6.5e-12,1,0.43 GT:PL:GQ 0/1:123,0,255:99 chr2 71062648 . G A 89 . DP=19;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,2,7,2;MQ=60;FQ=92;PV4=1,2.9e-07,1,0.19 GT:PL:GQ 0/1:119,0,185:99 chr2 71062833 . GC GCC 214 . INDEL;DP=48;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,22,21;MQ=60;FQ=-164 GT:PL:GQ 1/1:255,129,0:99 chr2 71162930 . A G 15.9 . DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:47,6,0:10 chr2 71162996 . A G 59 . DP=26;VDB=0.0190;AF1=0.5;AC1=1;DP4=10,2,13,0;MQ=60;FQ=62;PV4=0.22,5e-11,1,1 GT:PL:GQ 0/1:89,0,205:92 chr2 71163086 . T C 225 . DP=52;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,10,22,8;MQ=60;FQ=225;PV4=0.15,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 71163225 . C T 125 . DP=16;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,4,1,7;MQ=60;FQ=128;PV4=0.28,0.46,1,1 GT:PL:GQ 0/1:155,0,184:99 chr2 71211417 . C G 178 . DP=27;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,12,3,10;MQ=60;FQ=179;PV4=0.65,0.23,1,1 GT:PL:GQ 0/1:208,0,211:99 chr2 71211815 . G A 191 . DP=101;VDB=0.0365;AF1=0.5;AC1=1;DP4=32,15,32,19;MQ=59;FQ=194;PV4=0.67,1.1e-25,0.31,1 GT:PL:GQ 0/1:221,0,255:99 chr2 71211989 . A G 186 . DP=94;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,33,19,23;MQ=59;FQ=189;PV4=0.28,1.2e-22,0.24,1 GT:PL:GQ 0/1:216,0,255:99 chr2 71212129 . A T 179 . DP=48;VDB=0.0244;AF1=0.5;AC1=1;DP4=13,15,8,7;MQ=59;FQ=182;PV4=0.75,0.3,1,1 GT:PL:GQ 0/1:209,0,255:99 chr2 71220793 . T G 74 . DP=20;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,5,4,5;MQ=60;FQ=77;PV4=1,0.00016,1,0.5 GT:PL:GQ 0/1:104,0,208:99 chr2 71221822 . A G 137 . DP=32;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,8,5,10;MQ=60;FQ=140;PV4=0.47,0.0084,1,0.46 GT:PL:GQ 0/1:167,0,241:99 chr2 71297057 . C T 225 . DP=55;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,22,3,28;MQ=59;FQ=175;PV4=0.63,1,1,1 GT:PL:GQ 0/1:255,0,202:99 chr2 71297695 . T C 225 . DP=42;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,12,12,9;MQ=60;FQ=225;PV4=0.35,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 71297982 . C T 225 . DP=107;VDB=0.0345;AF1=0.5;AC1=1;DP4=28,19,24,33;MQ=60;FQ=225;PV4=0.11,0.0018,1,0.15 GT:PL:GQ 0/1:255,0,255:99 chr2 71305359 . G A 151 . DP=73;VDB=0.0298;AF1=0.5;AC1=1;DP4=23,11,23,15;MQ=59;FQ=154;PV4=0.63,3.2e-24,1,0.24 GT:PL:GQ 0/1:181,0,255:99 chr2 71305456 . C T 172 . DP=77;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,25,49;MQ=58;FQ=-250 GT:PL:GQ 1/1:205,223,0:99 chr2 71351487 . G A 225 . DP=79;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,24,17,22;MQ=59;FQ=225;PV4=0.82,1,0.078,0.48 GT:PL:GQ 0/1:255,0,255:99 chr2 71357417 . C A 222 . DP=37;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,10,27;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr2 71357634 . C T 12 . DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr2 71357710 . G C 26 . DP=5;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=29;PV4=1,1,1,0.14 GT:PL:GQ 0/1:56,0,77:59 chr2 71360144 . A C 29 . DP=76;VDB=0.0400;AF1=0.5;AC1=1;DP4=35,18,14,7;MQ=60;FQ=32;PV4=1,9.7e-30,0.056,0.45 GT:PL:GQ 0/1:59,0,255:62 chr2 71360625 . G T 158 . DP=75;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,21,14,19;MQ=58;FQ=161;PV4=1,2.9e-21,0.42,1 GT:PL:GQ 0/1:188,0,255:99 chr2 71360723 . A G 147 . DP=26;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,8,16;MQ=51;FQ=-99 GT:PL:GQ 1/1:180,72,0:99 chr2 71360735 . TTCCTCCTC TTCCTCCTCCTC 214 . INDEL;DP=20;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,5,9;MQ=47;FQ=-76.5 GT:PL:GQ 1/1:255,42,0:81 chr2 71361332 . T G 185 . DP=38;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,15,2,15;MQ=59;FQ=188;PV4=0.42,0.16,0.14,0.11 GT:PL:GQ 0/1:215,0,255:99 chr2 71365676 . G A 100 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,0,13,2;MQ=60;FQ=103;PV4=0.48,5e-12,1,1 GT:PL:GQ 0/1:130,0,166:99 chr2 71375065 . A C 44 . DP=9;VDB=0.0019;AF1=0.5005;AC1=1;DP4=2,0,7,0;MQ=60;FQ=3.02;PV4=1,0.0044,1,1 GT:PL:GQ 0/1:74,0,27:30 chr2 71417065 . G T 180 . DP=54;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,37;MQ=60;FQ=-171 GT:PL:GQ 1/1:213,144,0:99 chr2 71615571 . C T 61.1 . DP=9;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:94,21,0:39 chr2 71620818 . C T 132 . DP=38;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,8,17;MQ=59;FQ=-102 GT:PL:GQ 1/1:165,75,0:99 chr2 71627539 . C T 158 . DP=17;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,4;MQ=60;FQ=-75 GT:PL:GQ 1/1:191,48,0:93 chr2 71633275 . T C 190 . DP=43;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,26,14;MQ=60;FQ=-147 GT:PL:GQ 1/1:223,120,0:99 chr2 71633389 . C T 222 . DP=25;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,19;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr2 71635931 . G T 144 . DP=26;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,21;MQ=59;FQ=-105 GT:PL:GQ 1/1:177,78,0:99 chr2 71645828 . G A 222 . DP=25;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,8,17;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr2 71645890 . G C 103 . DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:136,15,0:27 chr2 71693943 . G A 28 . DP=4;VDB=0.0180;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=24.1;PV4=1,1,1,1 GT:PL:GQ 0/1:58,0,52:54 chr2 71708825 . tatccatccatccatccatccatccatccatccat tATCCatccatccatccatccatccatccatccatccat 56.2 . INDEL;DP=3;VDB=0.0107;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:95,6,0:10 chr2 71747235 . A G 222 . DP=27;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,19,7;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr2 71747432 . G T 18 . DP=15;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:50,9,0:15 chr2 71747851 . T C 36.5 . DP=4;VDB=0.0301;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:69,12,0:21 chr2 71747899 . G A 89 . DP=11;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:122,30,0:57 chr2 71755380 . A G 198 . DP=35;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,7;MQ=60;FQ=-123 GT:PL:GQ 1/1:231,96,0:99 chr2 71762232 . C T 189 . DP=102;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,28,63;MQ=60;FQ=-282 GT:PL:GQ 1/1:222,255,0:99 chr2 71762310 . A G 198 . DP=38;VDB=0.0400;AF1=1;AC1=2;DP4=0,1,15,20;MQ=60;FQ=-97;PV4=1,1e-06,1,0.22 GT:PL:GQ 1/1:231,70,0:99 chr2 71766487 . G A 177 . DP=11;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,9;MQ=58;FQ=-57 GT:PL:GQ 1/1:210,30,0:57 chr2 71780215 . T C 225 . DP=107;VDB=0.0380;AF1=0.5;AC1=1;DP4=23,31,20,30;MQ=60;FQ=225;PV4=0.84,0.2,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 71795152 . A T 225 . DP=98;VDB=0.0345;AF1=0.5;AC1=1;DP4=28,20,24,20;MQ=59;FQ=225;PV4=0.83,1,0.48,1 GT:PL:GQ 0/1:255,0,255:99 chr2 71797176 . A C 80 . DP=20;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,7,2,8;MQ=60;FQ=83;PV4=1,7.2e-11,1,1 GT:PL:GQ 0/1:110,0,212:99 chr2 71801564 . G A 114 . DP=36;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,9,3,19;MQ=60;FQ=117;PV4=0.38,1.1e-11,1,1 GT:PL:GQ 0/1:144,0,215:99 chr2 71828423 . A T 25 . DP=3;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:57,9,0:15 chr2 71829821 . G T 200 . DP=15;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,13,1;MQ=58;FQ=-69 GT:PL:GQ 1/1:233,42,0:81 chr2 71871039 . A G 154 . DP=26;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,20,6;MQ=60;FQ=-105 GT:PL:GQ 1/1:187,78,0:99 chr2 71871236 . A G 120 . DP=8;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:153,18,0:33 chr2 71891361 . C T 151 . DP=33;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,25,6;MQ=60;FQ=-120 GT:PL:GQ 1/1:184,93,0:99 chr2 71901286 . C T 41 . DP=11;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:74,30,0:57 chr2 71906171 . T C 130 . DP=24;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,22,2;MQ=60;FQ=-99 GT:PL:GQ 1/1:163,72,0:99 chr2 71906278 . A C 101 . DP=51;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,15,9,16;MQ=60;FQ=104;PV4=1,2.4e-24,1,1 GT:PL:GQ 0/1:131,0,255:99 chr2 71909822 . C T 129 . DP=29;VDB=0.0140;AF1=0.5;AC1=1;DP4=4,14,1,10;MQ=59;FQ=132;PV4=0.62,0.25,0.1,1 GT:PL:GQ 0/1:159,0,255:99 chr2 72361865 . C A 91 . DP=19;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,1,9,3;MQ=60;FQ=94;PV4=1,4.1e-07,1,0.051 GT:PL:GQ 0/1:121,0,140:99 chr2 72361960 . A G 155 . DP=40;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,5,10,10;MQ=60;FQ=158;PV4=0.32,1.6e-14,1,1 GT:PL:GQ 0/1:185,0,255:99 chr2 72692272 . AAG AAGAG 214 . INDEL;DP=57;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,47,9;MQ=60;FQ=-204 GT:PL:GQ 1/1:255,169,0:99 chr2 72742083 . gacacacacacacacacacacacacac gacacacacacacacacacacacac 214 . INDEL;DP=24;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,1;MQ=60;FQ=-91.5 GT:PL:GQ 1/1:255,57,0:99 chr2 73151231 . C T 175 . DP=20;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,19,1;MQ=60;FQ=-87 GT:PL:GQ 1/1:208,60,0:99 chr2 73227346 . A G 5.47 . DP=3;VDB=0.0186;AF1=0.5015;AC1=1;DP4=1,0,2,0;MQ=52;FQ=-6.39;PV4=1,0.23,0.33,1 GT:PL:GQ 0/1:34,0,22:27 chr2 73339430 . T G 222 . DP=38;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,10;MQ=58;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr2 73339708 . G A 208 . DP=64;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,29,33;MQ=60;FQ=-214 GT:PL:GQ 1/1:241,187,0:99 chr2 73429808 . G C 4.13 . DP=6;VDB=0.0151;AF1=0.4998;AC1=1;DP4=4,0,2,0;MQ=60;FQ=6.2;PV4=1,0.023,1,1 GT:PL:GQ 0/1:32,0,85:31 chr2 73435786 . C A 7.8 . DP=5;VDB=0.0070;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=10.3;PV4=1,0.029,1,1 GT:PL:GQ 0/1:37,0,51:38 chr2 73447736 . G A 9.52 . DP=15;VDB=0.0118;AF1=0.5;AC1=1;DP4=6,3,6,0;MQ=60;FQ=12.3;PV4=0.23,6.8e-10,1,1 GT:PL:GQ 0/1:39,0,208:41 chr2 73447775 . A G 178 . DP=19;VDB=0.0393;AF1=0.5;AC1=1;DP4=4,4,9,2;MQ=60;FQ=168;PV4=0.32,0.098,1,0.13 GT:PL:GQ 0/1:208,0,195:99 chr2 73450139 . A T 225 . DP=63;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,8,19,18;MQ=60;FQ=225;PV4=0.29,0.016,0.21,1 GT:PL:GQ 0/1:255,0,255:99 chr2 73455747 . C T 111 . DP=88;VDB=0.0271;AF1=0.5;AC1=1;DP4=17,29,13,28;MQ=59;FQ=114;PV4=0.66,7.3e-26,0.47,1 GT:PL:GQ 0/1:141,0,255:99 chr2 73461483 . C A 225 . DP=82;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,25,18,27;MQ=60;FQ=225;PV4=0.24,0.058,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 73467676 . GAAAA GAA 217 . INDEL;DP=50;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,17,3,25;MQ=60;FQ=217;PV4=1,7.5e-09,0.21,0.24 GT:PL:GQ 0/1:255,0,255:99 chr2 73471653 . T G 52 . DP=28;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,3,13,0;MQ=60;FQ=55;PV4=0.22,6.1e-11,1,1 GT:PL:GQ 0/1:82,0,236:85 chr2 73477351 . T C 109 . DP=25;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,5,8,4;MQ=59;FQ=112;PV4=1,0.00032,1,0.44 GT:PL:GQ 0/1:139,0,228:99 chr2 73478461 . A T 134 . DP=48;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,15,4,20;MQ=59;FQ=137;PV4=0.31,1.2e-14,1,0.12 GT:PL:GQ 0/1:164,0,255:99 chr2 73490412 . A G 171 . DP=34;VDB=0.0118;AF1=0.5;AC1=1;DP4=5,16,3,9;MQ=60;FQ=174;PV4=1,0.4,1,1 GT:PL:GQ 0/1:201,0,255:99 chr2 73492614 . A T 116 . DP=43;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,14,1,13;MQ=59;FQ=119;PV4=0.014,0.057,1,0.43 GT:PL:GQ 0/1:146,0,255:99 chr2 73650122 . T A 104 . DP=107;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,48,4,42;MQ=60;FQ=107;PV4=0.17,2.3e-46,1,1 GT:PL:GQ 0/1:134,0,255:99 chr2 73675227 . TCTC TCTCCTC 217 . INDEL;DP=86;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,13,26,23;MQ=57;FQ=217;PV4=0.65,1,0.003,0.4 GT:PL:GQ 0/1:255,0,255:99 chr2 73675669 . T G 160 . DP=45;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,5,11,12;MQ=60;FQ=163;PV4=0.065,6.5e-14,1,0.49 GT:PL:GQ 0/1:190,0,255:99 chr2 73675844 . C T 133 . DP=82;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,19,30,12;MQ=59;FQ=136;PV4=0.067,2.7e-27,0.089,0.41 GT:PL:GQ 0/1:163,0,255:99 chr2 73716810 . G A 178 . DP=73;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,15,20,24;MQ=59;FQ=181;PV4=1,2.6e-26,0.13,1 GT:PL:GQ 0/1:208,0,255:99 chr2 73717103 . G C 165 . DP=176;VDB=0.0380;AF1=0.5;AC1=1;DP4=55,32,54,31;MQ=59;FQ=168;PV4=1,2.5e-64,0.32,1 GT:PL:GQ 0/1:195,0,255:99 chr2 73828310 . T C 44 . DP=26;VDB=0.0216;AF1=0.5;AC1=1;DP4=16,1,8,1;MQ=60;FQ=47;PV4=1,2.3e-08,1,1 GT:PL:GQ 0/1:74,0,214:77 chr2 73828538 . G A 126 . DP=76;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,29,16,21;MQ=60;FQ=129;PV4=0.09,1.8e-25,1,0.47 GT:PL:GQ 0/1:156,0,255:99 chr2 73898118 . C T 53 . DP=17;VDB=0.0002;AF1=0.5;AC1=1;DP4=6,0,11,0;MQ=60;FQ=56;PV4=1,1.2e-07,1,1 GT:PL:GQ 0/1:83,0,112:86 chr2 73899613 . T G 74 . DP=20;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,10,2,7;MQ=55;FQ=77;PV4=0.57,4.2e-07,0.11,1 GT:PL:GQ 0/1:104,0,176:99 chr2 73899955 . G T 57 . DP=33;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,2,17,1;MQ=60;FQ=60;PV4=0.56,7.1e-16,1,1 GT:PL:GQ 0/1:87,0,209:90 chr2 73927931 . A G 157 . DP=64;VDB=0.0398;AF1=0.5;AC1=1;DP4=21,8,24,9;MQ=60;FQ=160;PV4=1,3.7e-19,1,1 GT:PL:GQ 0/1:187,0,255:99 chr2 73928098 . C G 150 . DP=173;VDB=0.0392;AF1=0.5;AC1=1;DP4=41,46,37,42;MQ=59;FQ=153;PV4=1,2.6e-61,0.46,0.21 GT:PL:GQ 0/1:180,0,255:99 chr2 73928366 . G C 4.13 . DP=65;VDB=0.0298;AF1=0.4998;AC1=1;DP4=13,28,5,11;MQ=59;FQ=6.2;PV4=1,1.9e-25,0.065,1 GT:PL:GQ 0/1:32,0,255:31 chr2 73957124 . A G 93 . DP=38;VDB=0.0393;AF1=0.5;AC1=1;DP4=12,11,5,9;MQ=59;FQ=96;PV4=0.5,3.2e-17,0.1,0.48 GT:PL:GQ 0/1:123,0,255:99 chr2 73994074 . G A 74 . DP=37;VDB=0.0384;AF1=0.5;AC1=1;DP4=1,18,2,15;MQ=59;FQ=77;PV4=0.59,3.3e-19,1,1 GT:PL:GQ 0/1:104,0,211:99 chr2 74007136 . T C 111 . DP=46;VDB=0.0216;AF1=0.5;AC1=1;DP4=10,18,10,7;MQ=59;FQ=114;PV4=0.22,2.3e-07,0.1,1 GT:PL:GQ 0/1:141,0,255:99 chr2 74087290 . T C 225 . DP=80;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,25,13,28;MQ=60;FQ=225;PV4=1,0.4,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr2 74128361 . T G 6.98 . DP=46;VDB=0.0190;AF1=0.4999;AC1=1;DP4=23,3,20,0;MQ=58;FQ=9.53;PV4=0.25,2.7e-26,0.021,1 GT:PL:GQ 0/1:36,0,255:37 chr2 74128369 . G A 114 . DP=57;VDB=0.0322;AF1=0.5;AC1=1;DP4=28,3,23,3;MQ=59;FQ=117;PV4=1,3e-20,0.027,1 GT:PL:GQ 0/1:144,0,255:99 chr2 74128391 . G C 153 . DP=70;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,55,14;MQ=59;FQ=-235 GT:PL:GQ 1/1:186,208,0:99 chr2 74128433 . C T 222 . DP=94;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,51,36;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 74128660 . tg t 75.5 . INDEL;DP=10;VDB=0.0003;AF1=0.5001;AC1=1;DP4=0,2,0,7;MQ=60;FQ=-3.28;PV4=1,0.33,1,1 GT:PL:GQ 0/1:113,0,34:37 chr2 74129664 . A G 225 . DP=195;VDB=0.0365;AF1=0.5;AC1=1;DP4=39,42,58,54;MQ=59;FQ=225;PV4=0.66,0.091,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 74129712 . C G 225 . DP=229;VDB=0.0399;AF1=0.5;AC1=1;DP4=42,54,67,59;MQ=59;FQ=225;PV4=0.18,0.27,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 74129895 . G A 137 . DP=66;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,24,5,31;MQ=59;FQ=140;PV4=1,1.8e-24,0.11,1 GT:PL:GQ 0/1:167,0,255:99 chr2 74135380 . G A 23 . DP=26;VDB=0.0190;AF1=0.5;AC1=1;DP4=15,3,7,1;MQ=59;FQ=26;PV4=1,2.8e-10,1,1 GT:PL:GQ 0/1:53,0,240:56 chr2 74135898 . A G 92 . DP=65;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,16,21,8;MQ=59;FQ=95;PV4=0.2,1.4e-24,1,1 GT:PL:GQ 0/1:122,0,255:99 chr2 74140789 . T C 85 . DP=89;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,27,14,28;MQ=60;FQ=88;PV4=1,1.1e-40,1,1 GT:PL:GQ 0/1:115,0,255:99 chr2 74140888 . A C 80 . DP=15;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,8,0,6;MQ=60;FQ=83;PV4=1,0.15,1,1 GT:PL:GQ 0/1:110,0,149:99 chr2 74153905 . C T 72 . DP=8;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:105,24,0:45 chr2 74185876 . A T 171 . DP=87;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,20,20,24;MQ=60;FQ=174;PV4=0.83,3.3e-32,1,0.49 GT:PL:GQ 0/1:201,0,255:99 chr2 74273383 . TCCCCC TCCCCCC 70.5 . INDEL;DP=31;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,4,14,4;MQ=60;FQ=40.5;PV4=0.4,1,1,0.38 GT:PL:GQ 0/1:108,0,75:78 chr2 74300717 . T C 95 . DP=46;VDB=0.0373;AF1=0.5;AC1=1;DP4=15,9,12,7;MQ=59;FQ=98;PV4=1,1.5e-12,1,1 GT:PL:GQ 0/1:125,0,255:99 chr2 74320262 . C G 153 . DP=19;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,9,1,8;MQ=59;FQ=125;PV4=1,1,1,1 GT:PL:GQ 0/1:183,0,152:99 chr2 74327453 . C T 31 . DP=10;VDB=0.0033;AF1=0.5;AC1=1;DP4=4,0,5,1;MQ=60;FQ=34;PV4=1,1.3e-07,1,0.12 GT:PL:GQ 0/1:61,0,99:64 chr2 74374884 . G A 4.13 . DP=4;VDB=0.0145;AF1=0.4999;AC1=1;DP4=1,1,2,0;MQ=54;FQ=5.62;PV4=1,0.41,0.21,1 GT:PL:GQ 0/1:32,0,39:31 chr2 74438776 . T A 6.2 . DP=7;VDB=0.0059;AF1=0.4999;AC1=1;DP4=5,0,1,1;MQ=60;FQ=8.65;PV4=0.29,0.0026,1,1 GT:PL:GQ 0/1:35,0,119:36 chr2 74441416 . A C 71 . DP=40;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,20,1,18;MQ=59;FQ=74;PV4=1,1.1e-13,1,0.44 GT:PL:GQ 0/1:101,0,212:99 chr2 74448655 . T C 225 . DP=56;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,16,8,21;MQ=60;FQ=225;PV4=0.57,0.024,0.18,0.28 GT:PL:GQ 0/1:255,0,255:99 chr2 74466594 . G A 225 . DP=43;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,12,7,16;MQ=58;FQ=225;PV4=0.75,0.2,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 74653291 . G A 76 . DP=19;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,4,4,4;MQ=60;FQ=79;PV4=1,1.1e-07,1,0.43 GT:PL:GQ 0/1:106,0,212:99 chr2 74725144 . T C 179 . DP=52;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,29,20;MQ=60;FQ=-175 GT:PL:GQ 1/1:212,148,0:99 chr2 74756548 . G C 225 . DP=47;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,13,9,12;MQ=59;FQ=225;PV4=0.77,0.095,1,0.33 GT:PL:GQ 0/1:255,0,255:99 chr2 74884611 . A G 73 . DP=27;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,3,10,1;MQ=60;FQ=76;PV4=0.61,1e-05,1,1 GT:PL:GQ 0/1:103,0,243:99 chr2 75061873 . C G 123 . DP=49;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,37;MQ=60;FQ=-156 GT:PL:GQ 1/1:156,129,0:99 chr2 75105798 . A G 222 . DP=51;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,28,23;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr2 75113572 . G A 122 . DP=60;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,18,13,14;MQ=60;FQ=125;PV4=1,7.2e-22,1,0.46 GT:PL:GQ 0/1:152,0,255:99 chr2 75113903 . A G 23 . DP=19;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,11,0,6;MQ=59;FQ=26;PV4=1,3.2e-07,0.082,0.011 GT:PL:GQ 0/1:53,0,200:56 chr2 75115108 . A G 225 . DP=32;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,6,12,8;MQ=60;FQ=187;PV4=0.72,1,1,1 GT:PL:GQ 0/1:255,0,214:99 chr2 75116627 . C T 55 . DP=56;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,25,3,18;MQ=60;FQ=58;PV4=0.5,1.6e-13,1,1 GT:PL:GQ 0/1:85,0,255:88 chr2 75186337 . A G 170 . DP=24;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,19,5;MQ=59;FQ=-99 GT:PL:GQ 1/1:203,72,0:99 chr2 75187573 . G A 222 . DP=24;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,19,4;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr2 75187793 . A T 34.5 . DP=5;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:67,12,0:21 chr2 75425728 . A G 60 . DP=28;VDB=0.0343;AF1=0.5;AC1=1;DP4=7,3,6,6;MQ=60;FQ=63;PV4=0.41,5.1e-10,1,0.21 GT:PL:GQ 0/1:90,0,192:93 chr2 75720664 . G A 117 . DP=40;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,12,8,11;MQ=60;FQ=120;PV4=1,1.8e-17,1,1 GT:PL:GQ 0/1:147,0,255:99 chr2 75744918 . T C 87 . DP=91;VDB=0.0345;AF1=0.5;AC1=1;DP4=37,13,28,9;MQ=60;FQ=90;PV4=1,2.1e-38,1,1 GT:PL:GQ 0/1:117,0,255:99 chr2 75745081 . T C 225 . DP=84;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,25,10,31;MQ=60;FQ=225;PV4=0.46,0.21,0.17,0.38 GT:PL:GQ 0/1:255,0,255:99 chr2 75873733 . T C 38 . DP=6;VDB=0.0000;AF1=0.5032;AC1=1;DP4=1,0,5,0;MQ=56;FQ=-8.63;PV4=1,0.00022,0.35,1 GT:PL:GQ 0/1:68,0,19:22 chr2 75874390 . G C 30 . DP=7;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,2,1,3;MQ=60;FQ=32.9;PV4=1,0.001,1,1 GT:PL:GQ 0/1:60,0,76:63 chr2 75879452 . G C 56 . DP=10;VDB=0.0163;AF1=0.5;AC1=1;DP4=1,6,1,2;MQ=58;FQ=59;PV4=1,1,1,1 GT:PL:GQ 0/1:86,0,147:89 chr2 75881828 . T C 112 . DP=41;VDB=0.0164;AF1=0.5;AC1=1;DP4=20,1,17,3;MQ=60;FQ=115;PV4=0.34,1.9e-12,1,1 GT:PL:GQ 0/1:142,0,214:99 chr2 75882399 . G A 4.77 . DP=16;VDB=0.0345;AF1=0.4999;AC1=1;DP4=3,7,2,3;MQ=60;FQ=6.99;PV4=1,6.7e-10,1,1 GT:PL:GQ 0/1:33,0,222:33 chr2 75915035 . C T 158 . DP=74;VDB=0.0393;AF1=0.5;AC1=1;DP4=17,21,13,19;MQ=59;FQ=161;PV4=0.81,8.7e-20,1,0.14 GT:PL:GQ 0/1:188,0,255:99 chr2 75919272 . Aatatatatatatatatatatatata Aatatatatatatatatatata 41 . INDEL;DP=9;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,0,4;MQ=39;FQ=-46.5 GT:PL:GQ 1/1:81,12,0:21 chr2 75923413 . T C 59 . DP=12;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,4,4,2;MQ=60;FQ=62;PV4=0.57,4.1e-06,1,0.19 GT:PL:GQ 0/1:89,0,159:92 chr2 75928300 . G T 11.3 . DP=18;VDB=0.0042;AF1=0.5;AC1=1;DP4=10,2,5,0;MQ=60;FQ=14.2;PV4=1,8.3e-07,1,1 GT:PL:GQ 0/1:41,0,229:43 chr2 77748595 . T C 36 . DP=11;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,1,5,1;MQ=60;FQ=39;PV4=1,0.0075,1,1 GT:PL:GQ 0/1:66,0,116:69 chr2 79253029 . T G 15.1 . DP=10;VDB=0.0025;AF1=0.5;AC1=1;DP4=5,0,3,1;MQ=60;FQ=18.1;PV4=0.44,1.9e-05,1,1 GT:PL:GQ 0/1:45,0,102:48 chr2 79253150 . A G 111 . DP=60;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,9,17,7;MQ=59;FQ=114;PV4=1,9.1e-16,1,1 GT:PL:GQ 0/1:141,0,255:99 chr2 79253375 . C T 203 . DP=28;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,11,2,14;MQ=59;FQ=124;PV4=0.5,1,0.21,0.088 GT:PL:GQ 0/1:233,0,151:99 chr2 79254065 . C T 3.54 . DP=103;VDB=0.0042;AF1=0.4998;AC1=1;DP4=58,12,29,1;MQ=58;FQ=5.47;PV4=0.1,5.7e-33,7.8e-05,0.49 GT:PL:GQ 0/1:31,0,255:30 chr2 79254101 . T G 28 . DP=158;VDB=0.0190;AF1=0.5;AC1=1;DP4=77,24,46,6;MQ=59;FQ=31;PV4=0.087,4.5e-51,0.018,1 GT:PL:GQ 0/1:58,0,255:61 chr2 79254261 . T C 98 . DP=53;VDB=0.0033;AF1=0.5;AC1=1;DP4=8,26,6,11;MQ=60;FQ=101;PV4=0.51,8.9e-19,1,0.41 GT:PL:GQ 0/1:128,0,255:99 chr2 79255426 . G C 180 . DP=33;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,14,4,8;MQ=59;FQ=183;PV4=1,0.19,0.095,1 GT:PL:GQ 0/1:210,0,255:99 chr2 79312414 . G A 222 . DP=68;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,26,38;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr2 79313815 . G T 95 . DP=25;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,10,5;MQ=60;FQ=-72 GT:PL:GQ 1/1:128,45,0:87 chr2 79314081 . T C 82 . DP=16;VDB=0.0398;AF1=0.5;AC1=1;DP4=0,9,3,4;MQ=60;FQ=85;PV4=0.062,4.3e-08,1,0.21 GT:PL:GQ 0/1:112,0,156:99 chr2 79314094 . G T 158 . DP=11;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:191,27,0:51 chr2 79350347 . A G 173 . DP=94;VDB=0.0399;AF1=0.5;AC1=1;DP4=32,14,29,17;MQ=60;FQ=176;PV4=0.66,2e-34,1,0.38 GT:PL:GQ 0/1:203,0,255:99 chr2 79422965 . C G 225 . DP=38;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,9,8,9;MQ=60;FQ=225;PV4=0.74,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 79750282 . A G 82 . DP=22;VDB=0.0216;AF1=0.5;AC1=1;DP4=8,0,8,2;MQ=60;FQ=85;PV4=0.48,4.5e-07,1,1 GT:PL:GQ 0/1:112,0,140:99 chr2 80772972 . G A 30 . DP=19;VDB=0.0393;AF1=0.5;AC1=1;DP4=11,1,7,0;MQ=60;FQ=33;PV4=1,1e-09,1,1 GT:PL:GQ 0/1:60,0,196:63 chr2 80801346 . T C 18.1 . DP=11;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,1,7,0;MQ=60;FQ=21;PV4=0.36,2.3e-07,1,1 GT:PL:GQ 0/1:48,0,104:51 chr2 80831481 . G A 47 . DP=3;VDB=0.0030;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:79,9,0:16 chr2 84518438 . T C 154 . DP=34;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,9,6,14;MQ=59;FQ=157;PV4=1,5.7e-07,0.21,0.32 GT:PL:GQ 0/1:184,0,232:99 chr2 84650707 . A G 222 . DP=15;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,11,2;MQ=60;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr2 84676163 . C A 98 . DP=16;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,1,15;MQ=60;FQ=-75 GT:PL:GQ 1/1:131,48,0:93 chr2 84756049 . G A 222 . DP=71;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,50,21;MQ=60;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr2 84756341 . T G 44.3 . DP=5;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:77,15,0:27 chr2 84771480 . G A 222 . DP=55;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,29,23;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr2 84771567 . C T 173 . DP=34;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,30;MQ=60;FQ=-129 GT:PL:GQ 1/1:206,102,0:99 chr2 84800605 . C A 211 . DP=41;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,25,16;MQ=60;FQ=-150 GT:PL:GQ 1/1:244,123,0:99 chr2 84806553 . G A 63 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:95,9,0:16 chr2 84822715 . C T 78 . DP=12;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:111,33,0:63 chr2 84834063 . T C 222 . DP=147;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,118,26;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 84834237 . T C 111 . DP=94;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,84;MQ=60;FQ=-282 GT:PL:GQ 1/1:144,255,0:99 chr2 84880445 . G C 56 . DP=17;VDB=0.0244;AF1=0.5;AC1=1;DP4=8,2,5,2;MQ=60;FQ=59;PV4=1,5.9e-08,1,1 GT:PL:GQ 0/1:86,0,206:89 chr2 84896628 . G A 152 . DP=55;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,16,11,20;MQ=60;FQ=155;PV4=0.57,9.6e-17,1,0.16 GT:PL:GQ 0/1:182,0,255:99 chr2 84897517 . A G 170 . DP=27;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,15;MQ=60;FQ=-108 GT:PL:GQ 1/1:203,81,0:99 chr2 84899638 . G A 191 . DP=44;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,20,2,20;MQ=59;FQ=194;PV4=1,0.39,1,0.39 GT:PL:GQ 0/1:221,0,237:99 chr2 84924823 . T C 225 . DP=88;VDB=0.0400;AF1=0.5;AC1=1;DP4=29,22,17,17;MQ=60;FQ=225;PV4=0.66,1,1,0.39 GT:PL:GQ 0/1:255,0,255:99 chr2 84955129 . T G 11.1 . DP=4;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr2 85023554 . A G 178 . DP=81;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,12,28,18;MQ=59;FQ=181;PV4=0.82,3e-28,1,0.29 GT:PL:GQ 0/1:208,0,255:99 chr2 85023653 . G C 137 . DP=62;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,19,13,25;MQ=60;FQ=140;PV4=0.39,2.7e-15,1,1 GT:PL:GQ 0/1:167,0,252:99 chr2 85024731 . C T 145 . DP=164;VDB=0.0380;AF1=0.5;AC1=1;DP4=45,51,26,41;MQ=60;FQ=148;PV4=0.34,2.2e-66,1,0.15 GT:PL:GQ 0/1:175,0,255:99 chr2 85040393 . G C 32 . DP=10;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,4,0,6;MQ=60;FQ=35;PV4=1,2.1e-05,1,0.15 GT:PL:GQ 0/1:62,0,96:65 chr2 85040405 . A G 68 . DP=8;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=56.8;PV4=1,1,1,0.15 GT:PL:GQ 0/1:98,0,84:87 chr2 85041295 . T C 13.2 . DP=20;VDB=0.0003;AF1=0.5;AC1=1;DP4=1,9,0,10;MQ=60;FQ=16.1;PV4=1,7.1e-10,1,1 GT:PL:GQ 0/1:43,0,165:46 chr2 85051122 . G A 36 . DP=23;VDB=0.0216;AF1=0.5;AC1=1;DP4=10,5,6,1;MQ=60;FQ=39;PV4=0.62,2.7e-07,1,1 GT:PL:GQ 0/1:66,0,255:69 chr2 85066245 . G A 33 . DP=22;VDB=0.0190;AF1=0.5;AC1=1;DP4=8,3,10,1;MQ=60;FQ=36;PV4=0.59,5.1e-07,1,1 GT:PL:GQ 0/1:63,0,211:66 chr2 85361101 . T G 158 . DP=43;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,14,7,14;MQ=60;FQ=161;PV4=1,4.7e-07,1,0.09 GT:PL:GQ 0/1:188,0,255:99 chr2 85532205 . C G 14.2 . DP=6;VDB=0.0001;AF1=0.5025;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-7.79;PV4=1,0.0036,1,1 GT:PL:GQ 0/1:44,0,20:23 chr2 85533670 . C T 41 . DP=33;VDB=0.0373;AF1=0.5;AC1=1;DP4=9,14,2,7;MQ=59;FQ=44;PV4=0.44,2e-05,1,0.41 GT:PL:GQ 0/1:71,0,255:74 chr2 85536415 . G A 105 . DP=54;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,23,5,16;MQ=60;FQ=108;PV4=1,6.2e-14,0.11,1 GT:PL:GQ 0/1:135,0,255:99 chr2 85549868 . A G 178 . DP=84;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,21,55;MQ=60;FQ=-256 GT:PL:GQ 1/1:211,229,0:99 chr2 85552186 . C A 75 . DP=26;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,10,4,8;MQ=60;FQ=78;PV4=1,3.3e-14,1,0.44 GT:PL:GQ 0/1:105,0,255:99 chr2 85552211 . ATTT ATT 103 . INDEL;DP=15;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,4,2,5;MQ=60;FQ=106;PV4=1,0.0053,1,0.021 GT:PL:GQ 0/1:141,0,150:99 chr2 85553784 . C T 89 . DP=73;VDB=0.0380;AF1=0.5;AC1=1;DP4=23,17,14,18;MQ=60;FQ=92;PV4=0.34,9.1e-36,1,1 GT:PL:GQ 0/1:119,0,255:99 chr2 85554080 . G A 149 . DP=114;VDB=0.0400;AF1=0.5;AC1=1;DP4=32,14,41,21;MQ=60;FQ=152;PV4=0.84,4.2e-32,1,1 GT:PL:GQ 0/1:179,0,255:99 chr2 85570942 . G C 7.77 . DP=3;VDB=0.0030;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:39,9,0:11 chr2 85571710 . A G 194 . DP=16;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,13,1;MQ=60;FQ=-69 GT:PL:GQ 1/1:227,42,0:81 chr2 85573033 . G A 188 . DP=69;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,31,36;MQ=60;FQ=-229 GT:PL:GQ 1/1:221,202,0:99 chr2 85576451 . GTCTC GTC 53.2 . INDEL;DP=2;VDB=0.0178;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:92,6,0:10 chr2 85617058 . C T 148 . DP=58;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,22,5,24;MQ=60;FQ=151;PV4=0.75,1.5e-09,1,1 GT:PL:GQ 0/1:178,0,255:99 chr2 85617327 . C T 188 . DP=131;VDB=0.0380;AF1=0.5;AC1=1;DP4=36,29,35,29;MQ=59;FQ=191;PV4=1,3.1e-27,0.49,1 GT:PL:GQ 0/1:218,0,255:99 chr2 85617579 . C T 119 . DP=82;VDB=0.0345;AF1=0.5;AC1=1;DP4=23,29,9,20;MQ=59;FQ=122;PV4=0.34,4.1e-20,0.34,0.35 GT:PL:GQ 0/1:149,0,255:99 chr2 85617913 . G T 64 . DP=20;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,2,11,0;MQ=58;FQ=67;PV4=0.19,4.9e-08,0.098,1 GT:PL:GQ 0/1:94,0,188:97 chr2 85618138 . TCAGTGGAGCCA TCA 18.5 . INDEL;DP=23;VDB=0.0099;AF1=0.5;AC1=1;DP4=2,12,0,5;MQ=54;FQ=21.5;PV4=1,6.8e-06,0,0.2 GT:PL:GQ 0/1:56,0,255:59 chr2 85622059 . T C 222 . DP=41;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,28;MQ=60;FQ=-14