##fileformat=VCFv4.1 ##samtoolsVersion=0.1.18 (r982:295) ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT UDP_5436 chr1 69511 . A G 222 . DP=72;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,49,18;MQ=30;FQ=-210;PV4=1,1,1,0.2 GT:PL:GQ 1/1:255,183,0:99 chr1 752894 . T C 45 . DP=5;VDB=0.0017;AF1=0.504;AC1=1;DP4=0,1,0,4;MQ=32;FQ=-9.5;PV4=1,0.058,0.14,1 GT:PL:GQ 0/1:75,0,18:21 chr1 762273 . G A 57 . DP=86;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,45,4,25;MQ=53;FQ=60;PV4=0.76,1.5e-32,2.5e-14,1 GT:PL:GQ 0/1:87,0,255:90 chr1 762589 . G C 5.52 . DP=4;VDB=0.0163;AF1=0.5101;AC1=1;DP4=0,1,2,0;MQ=40;FQ=-13.2;PV4=0.33,0.024,1,1 GT:PL:GQ 0/1:34,0,14:19 chr1 762592 . C G 4.18 . DP=4;VDB=0.0163;AF1=0.51;AC1=1;DP4=0,1,2,0;MQ=40;FQ=-13.3;PV4=0.33,0.068,1,1 GT:PL:GQ 0/1:32,0,14:20 chr1 762601 . T C 24.1 . DP=3;VDB=0.0178;AF1=0.5102;AC1=1;DP4=0,1,2,0;MQ=40;FQ=-13.2;PV4=0.33,1,1,1 GT:PL:GQ 0/1:54,0,14:17 chr1 777232 . C T 53 . DP=13;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,3,6,2;MQ=58;FQ=56;PV4=0.29,3.3e-06,1,1 GT:PL:GQ 0/1:83,0,114:86 chr1 792263 . A G 190 . DP=23;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,16,6;MQ=27;FQ=-93 GT:PL:GQ 1/1:223,66,0:99 chr1 792480 . C T 222 . DP=45;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,18,26;MQ=50;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 866319 . G A 138 . DP=15;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,10,4;MQ=60;FQ=-69 GT:PL:GQ 1/1:171,42,0:81 chr1 866511 . CCCCTCCCTCCCTCCC CCCCTCCCTCCCTCCCTCCC 71.2 . INDEL;DP=7;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:110,6,0:10 chr1 876499 . A G 88 . DP=11;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,7,3;MQ=55;FQ=-57 GT:PL:GQ 1/1:121,30,0:57 chr1 879676 . G A 15.6 . DP=5;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:48,12,0:20 chr1 880238 . A G 222 . DP=44;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,24,19;MQ=59;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 881627 . G A 135 . DP=26;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,15,9;MQ=60;FQ=-99 GT:PL:GQ 1/1:168,72,0:99 chr1 883625 . A G 162 . DP=27;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,11,13;MQ=59;FQ=-99 GT:PL:GQ 1/1:195,72,0:99 chr1 884091 . C G 76 . DP=56;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,32,1,20;MQ=47;FQ=79;PV4=1,6.6e-14,1,1 GT:PL:GQ 0/1:106,0,214:99 chr1 884101 . A C 40 . DP=49;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,21,1,23;MQ=44;FQ=43;PV4=1,2.2e-18,0.021,0.01 GT:PL:GQ 0/1:70,0,167:73 chr1 886788 . G A 64 . DP=9;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:97,27,0:51 chr1 886817 . C T 5.29 . DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:35,6,0:6 chr1 887560 . A C 175 . DP=51;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,16,33;MQ=59;FQ=-175 GT:PL:GQ 1/1:208,148,0:99 chr1 887801 . A G 153 . DP=28;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,22,4;MQ=59;FQ=-105 GT:PL:GQ 1/1:186,78,0:99 chr1 888639 . T C 185 . DP=59;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,32,24;MQ=55;FQ=-196 GT:PL:GQ 1/1:218,169,0:99 chr1 888659 . T C 222 . DP=70;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,39,27;MQ=55;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr1 889638 . G C 21 . DP=3;VDB=0.0050;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:53,9,0:15 chr1 892745 . G A 165 . DP=16;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,7,9;MQ=60;FQ=-75 GT:PL:GQ 1/1:198,48,0:93 chr1 894573 . G A 222 . DP=29;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,10,17;MQ=58;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 897325 . G C 222 . DP=118;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,43,72;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 897564 . T C 168 . DP=71;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,41,26;MQ=59;FQ=-229 GT:PL:GQ 1/1:201,202,0:99 chr1 898323 . T C,A 203 . DP=38;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,14,23;MQ=60;FQ=-135 GT:PL:GQ 1/1:236,108,0,233,90,230:99 chr1 899928 . G C 103 . DP=19;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,16;MQ=45;FQ=-81 GT:PL:GQ 1/1:136,54,0:99 chr1 899937 . G T 25 . DP=14;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:57,9,0:15 chr1 899938 . G C 31 . DP=14;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:63,9,0:16 chr1 899942 . G A 91 . DP=14;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,13;MQ=47;FQ=-69 GT:PL:GQ 1/1:124,42,0:81 chr1 899989 . A C 34.8 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:66,6,0:10 chr1 900286 . A G 20 . DP=16;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,1;MQ=53;FQ=-36 GT:PL:GQ 1/1:52,9,0:15 chr1 909073 . C T 90 . DP=11;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:123,33,0:63 chr1 909238 . G C 155 . DP=12;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,4;MQ=60;FQ=-60 GT:PL:GQ 1/1:188,33,0:63 chr1 909768 . A G 184 . DP=66;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,29,28;MQ=60;FQ=-199 GT:PL:GQ 1/1:217,172,0:99 chr1 911595 . A G 222 . DP=24;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,9,13;MQ=59;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 912049 . T C 139 . DP=15;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,14;MQ=60;FQ=-69 GT:PL:GQ 1/1:172,42,0:81 chr1 914333 . C G 149 . DP=16;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,12,3;MQ=60;FQ=-72 GT:PL:GQ 1/1:182,45,0:87 chr1 914852 . G C 222 . DP=32;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,23,8;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 914876 . T C 222 . DP=45;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,29,13;MQ=59;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 914940 . T C 222 . DP=81;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,53,24;MQ=59;FQ=-259 GT:PL:GQ 1/1:255,232,0:99 chr1 915227 . A G 222 . DP=45;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,23;MQ=59;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 916511 . C T 225 . DP=56;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,2,25,6;MQ=58;FQ=183;PV4=0.44,1,1,1 GT:PL:GQ 0/1:255,0,210:99 chr1 916549 . A G 222 . DP=87;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,60,24;MQ=60;FQ=-280 GT:PL:GQ 1/1:255,253,0:99 chr1 935222 . C A 83 . DP=10;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,1,8;MQ=57;FQ=-54 GT:PL:GQ 1/1:116,27,0:51 chr1 948846 . TA TAA 161 . INDEL;DP=13;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-73.5 GT:PL:GQ 1/1:202,39,0:75 chr1 948870 . C G 110 . DP=22;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,15,3;MQ=60;FQ=-81 GT:PL:GQ 1/1:143,54,0:99 chr1 948921 . T C 222 . DP=44;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,19;MQ=59;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 949654 . A G 222 . DP=52;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,27,24;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 949925 . C T 219 . DP=24;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,8,16;MQ=59;FQ=-99 GT:PL:GQ 1/1:252,72,0:99 chr1 977330 . T C 74 . DP=11;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:107,27,0:51 chr1 977570 . G A 101 . DP=27;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,3,19;MQ=59;FQ=-93 GT:PL:GQ 1/1:134,66,0:99 chr1 978603 . CCT C 214 . INDEL;DP=41;VDB=0.0399;AF1=1;AC1=2;DP4=0,1,28,10;MQ=59;FQ=-133;PV4=0.28,1,1,0.22 GT:PL:GQ 1/1:255,98,0:99 chr1 981087 . A G 222 . DP=69;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,30,37;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr1 981931 . A G 222 . DP=45;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,28,13;MQ=58;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 982941 . T C 194 . DP=92;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,43,43;MQ=60;FQ=-282 GT:PL:GQ 1/1:227,255,0:99 chr1 982994 . T C 162 . DP=94;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,38,49;MQ=59;FQ=-282 GT:PL:GQ 1/1:195,255,0:99 chr1 984171 . CAG C 4.26 . INDEL;DP=3;VDB=0.0225;AF1=1;AC1=2;DP4=0,0,0,2;MQ=23;FQ=-40.5 GT:PL:GQ 1/1:41,6,0:5 chr1 984302 . T C 62.5 . DP=4;VDB=0.0287;AF1=1;AC1=2;DP4=0,0,2,2;MQ=60;FQ=-39 GT:PL:GQ 1/1:95,12,0:21 chr1 985266 . C T 212 . DP=36;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,19,17;MQ=59;FQ=-135 GT:PL:GQ 1/1:245,108,0:99 chr1 986443 . C T 222 . DP=66;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,21,41;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 986732 . G A 46 . DP=12;VDB=0.0305;AF1=0.5;AC1=1;DP4=5,1,1,4;MQ=60;FQ=49;PV4=0.08,0.0025,1,1 GT:PL:GQ 0/1:76,0,125:79 chr1 987200 . C T 222 . DP=54;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,23;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 988932 . G C 141 . DP=19;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,5,12;MQ=60;FQ=-78 GT:PL:GQ 1/1:174,51,0:99 chr1 990280 . C T 220 . DP=14;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,9,4;MQ=60;FQ=-66 GT:PL:GQ 1/1:253,39,0:75 chr1 1007203 . A G 103 . DP=6;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,3,2;MQ=60;FQ=-42 GT:PL:GQ 1/1:136,15,0:27 chr1 1007432 . G A 222 . DP=22;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,6,16;MQ=59;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 1018144 . T C 96.1 . DP=8;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,4,3;MQ=60;FQ=-48 GT:PL:GQ 1/1:129,21,0:39 chr1 1019175 . C G 74.5 . DP=4;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,0;MQ=54;FQ=-39 GT:PL:GQ 1/1:107,12,0:21 chr1 1019180 . T C 25.5 . DP=4;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,0;MQ=54;FQ=-39 GT:PL:GQ 1/1:58,12,0:21 chr1 1021415 . A G 75 . DP=11;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:108,30,0:57 chr1 1026707 . C A 146 . DP=34;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,28,5;MQ=59;FQ=-126 GT:PL:GQ 1/1:179,99,0:99 chr1 1026801 . T A 222 . DP=47;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,29;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 1103150 . G A 6.2 . DP=5;VDB=0.0186;AF1=0.4999;AC1=1;DP4=3,0,1,1;MQ=60;FQ=8.65;PV4=0.4,0.012,1,0.48 GT:PL:GQ 0/1:35,0,85:36 chr1 1118212 . T C 86 . DP=32;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,4,15,1;MQ=60;FQ=89;PV4=0.33,2.4e-06,1,1 GT:PL:GQ 0/1:116,0,238:99 chr1 1147243 . A C 60 . DP=12;VDB=0.0384;AF1=0.5;AC1=1;DP4=1,3,2,5;MQ=60;FQ=62.7;PV4=1,2.5e-06,1,1 GT:PL:GQ 0/1:90,0,101:93 chr1 1147297 . G A 113 . DP=16;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,4,6,1;MQ=59;FQ=116;PV4=0.31,1,1,0.28 GT:PL:GQ 0/1:143,0,183:99 chr1 1153113 . G A 192 . DP=75;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,23,13,27;MQ=60;FQ=195;PV4=0.8,8.4e-18,0.19,1 GT:PL:GQ 0/1:222,0,255:99 chr1 1158631 . A G 222 . DP=49;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,38,11;MQ=59;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 1159485 . C T 32 . DP=5;VDB=0.0080;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=29.6;PV4=1,1,1,1 GT:PL:GQ 0/1:62,0,58:60 chr1 1163804 . C T 196 . DP=54;VDB=0.0118;AF1=0.5;AC1=1;DP4=23,8,15,6;MQ=60;FQ=199;PV4=1,0.00025,1,1 GT:PL:GQ 0/1:226,0,255:99 chr1 1177918 . CT C 122 . INDEL;DP=34;VDB=0.0164;AF1=0.5;AC1=1;DP4=22,0,11,1;MQ=60;FQ=125;PV4=0.35,0.096,1,0.2 GT:PL:GQ 0/1:160,0,182:99 chr1 1178245 . C T 225 . DP=51;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,11,12,10;MQ=60;FQ=225;PV4=0.78,0.11,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 1178482 . A G 118 . DP=25;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,11,1,9;MQ=59;FQ=121;PV4=1,0.082,0.14,1 GT:PL:GQ 0/1:148,0,174:99 chr1 1178925 . G A 58 . DP=24;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,10,2,8;MQ=60;FQ=61;PV4=1,1.2e-08,1,1 GT:PL:GQ 0/1:88,0,235:91 chr1 1179309 . G A 69 . DP=9;VDB=0.0017;AF1=0.5;AC1=1;DP4=3,1,3,1;MQ=60;FQ=71.4;PV4=1,0.35,1,1 GT:PL:GQ 0/1:99,0,107:99 chr1 1196863 . T C 110 . DP=7;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:143,18,0:33 chr1 1223465 . GCC GC 43.5 . INDEL;DP=4;VDB=0.0161;AF1=0.5005;AC1=1;DP4=0,1,0,3;MQ=60;FQ=-8.23;PV4=1,1,1,1 GT:PL:GQ 0/1:81,0,27:30 chr1 1225959 . C G 89 . DP=52;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,19,8,12;MQ=60;FQ=92;PV4=1,7.8e-13,1,0.23 GT:PL:GQ 0/1:119,0,255:99 chr1 1226348 . C G 74 . DP=17;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,0,6,4;MQ=59;FQ=76.4;PV4=0.1,6.7e-06,0.21,1 GT:PL:GQ 0/1:104,0,112:99 chr1 1226423 . T C 76 . DP=32;VDB=0.0384;AF1=0.5;AC1=1;DP4=8,8,5,9;MQ=60;FQ=79;PV4=0.48,9.2e-12,1,0.17 GT:PL:GQ 0/1:106,0,255:99 chr1 1229680 . G T 222 . DP=45;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,26,18;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 1238492 . G A 106 . DP=23;VDB=0.0325;AF1=0.5;AC1=1;DP4=7,3,7,4;MQ=60;FQ=109;PV4=1,1e-06,1,0.34 GT:PL:GQ 0/1:136,0,198:99 chr1 1239339 . T G 124 . DP=43;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,34,3;MQ=59;FQ=-138 GT:PL:GQ 1/1:157,111,0:99 chr1 1242707 . A G 173 . DP=52;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,6,43;MQ=59;FQ=-175 GT:PL:GQ 1/1:206,148,0:99 chr1 1245368 . G A 3.54 . DP=7;VDB=0.0116;AF1=0.4998;AC1=1;DP4=0,4,0,3;MQ=60;FQ=5.47;PV4=1,0.0001,1,0.47 GT:PL:GQ 0/1:31,0,94:30 chr1 1246004 . A G 222 . DP=29;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,20,7;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 1247494 . T C 17.1 . DP=7;VDB=0.0210;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=20.1;PV4=1,0.038,1,1 GT:PL:GQ 0/1:47,0,91:50 chr1 1249187 . G A 104 . DP=118;VDB=0.0399;AF1=0.5;AC1=1;DP4=29,31,34,20;MQ=60;FQ=107;PV4=0.13,9.1e-51,0.15,1 GT:PL:GQ 0/1:134,0,255:99 chr1 1254136 . G A 167 . DP=31;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,23,5;MQ=59;FQ=-111 GT:PL:GQ 1/1:200,84,0:99 chr1 1254436 . A G 222 . DP=61;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,34;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 1254443 . G A 222 . DP=60;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,27,33;MQ=60;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr1 1254841 . C G 118 . DP=42;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,4,29;MQ=60;FQ=-126 GT:PL:GQ 1/1:151,99,0:99 chr1 1262591 . C T 195 . DP=36;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,30,2;MQ=60;FQ=-123 GT:PL:GQ 1/1:228,96,0:99 chr1 1262966 . C T 222 . DP=41;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,25,16;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 1263144 . G A 129 . DP=24;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,3,18;MQ=60;FQ=-90 GT:PL:GQ 1/1:162,63,0:99 chr1 1266738 . G A 183 . DP=72;VDB=0.0398;AF1=0.5;AC1=1;DP4=29,14,18,8;MQ=59;FQ=186;PV4=1,3.2e-07,0.033,0.3 GT:PL:GQ 0/1:213,0,255:99 chr1 1266740 . T A 195 . DP=72;VDB=0.0399;AF1=0.5;AC1=1;DP4=28,14,20,8;MQ=59;FQ=198;PV4=0.79,4.5e-09,0.015,0.24 GT:PL:GQ 0/1:225,0,255:99 chr1 1268847 . T G 204 . DP=120;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,55,57;MQ=60;FQ=-282 GT:PL:GQ 1/1:237,255,0:99 chr1 1269554 . T C 222 . DP=59;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,40,16;MQ=59;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 1273116 . A G 222 . DP=27;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,11,14;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 1273278 . A G 32 . DP=5;VDB=0.0254;AF1=0.5025;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-7.78;PV4=1,0.0081,1,0.14 GT:PL:GQ 0/1:62,0,20:23 chr1 1275291 . G A 28.8 . DP=4;VDB=0.0199;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:60,6,0:10 chr1 1276930 . gcacacacac gcacacac 165 . INDEL;DP=49;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,0,15,0;MQ=52;FQ=113;PV4=1,1,0.021,0.13 GT:PL:GQ 0/1:203,0,148:99 chr1 1276973 . GACACA GACACACACA 214 . INDEL;DP=122;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,76,39;MQ=50;FQ=-290 GT:PL:GQ 1/1:255,255,0:99 chr1 1277533 . T C 164 . DP=34;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,5,25;MQ=60;FQ=-117 GT:PL:GQ 1/1:197,90,0:99 chr1 1278237 . T C 179 . DP=24;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,23;MQ=60;FQ=-96 GT:PL:GQ 1/1:212,69,0:99 chr1 1284490 . G A 51.1 . DP=8;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:84,21,0:39 chr1 1288471 . C T 10.4 . DP=4;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:42,9,0:13 chr1 1288583 . C G 148 . DP=38;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,9;MQ=60;FQ=-96 GT:PL:GQ 1/1:181,69,0:99 chr1 1289367 . CTG C 214 . INDEL;DP=29;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,20,9;MQ=58;FQ=-122 GT:PL:GQ 1/1:255,87,0:99 chr1 1289911 . G A 52.1 . DP=8;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:85,21,0:39 chr1 1293764 . G C 96 . DP=30;VDB=0.0244;AF1=0.5;AC1=1;DP4=13,2,12,3;MQ=60;FQ=99;PV4=1,1.2e-09,1,1 GT:PL:GQ 0/1:126,0,214:99 chr1 1296691 . C G 217 . DP=64;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,8,56;MQ=60;FQ=-220 GT:PL:GQ 1/1:250,193,0:99 chr1 1309885 . A G 85 . DP=15;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,3,5,4;MQ=60;FQ=83.3;PV4=1,1.3e-05,1,1 GT:PL:GQ 0/1:115,0,112:99 chr1 1310074 . C G 168 . DP=23;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,9,12;MQ=60;FQ=-90 GT:PL:GQ 1/1:201,63,0:99 chr1 1323143 . CCT C 217 . INDEL;DP=14;VDB=0.0066;AF1=0.5;AC1=1;DP4=6,1,5,2;MQ=60;FQ=217;PV4=1,0.057,1,0.43 GT:PL:GQ 0/1:255,0,255:99 chr1 1330726 . A G 62 . DP=18;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,2,6,2;MQ=60;FQ=65;PV4=1,2.6e-06,1,0.46 GT:PL:GQ 0/1:92,0,185:95 chr1 1333598 . C A 225 . DP=51;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,6,19,14;MQ=60;FQ=224;PV4=0.76,0.18,1,0.37 GT:PL:GQ 0/1:255,0,254:99 chr1 1335790 . A G 55 . DP=14;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,6,1,5;MQ=60;FQ=58;PV4=1,2.9e-05,1,0.19 GT:PL:GQ 0/1:85,0,155:88 chr1 1336136 . GGAG GG 157 . INDEL;DP=20;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,11,0,7;MQ=60;FQ=160;PV4=1,0.11,1,0.4 GT:PL:GQ 0/1:195,0,255:99 chr1 1342612 . G C 24 . DP=19;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,8,2,4;MQ=60;FQ=27;PV4=1,4.4e-05,1,1 GT:PL:GQ 0/1:54,0,245:57 chr1 1361633 . G A 13.2 . DP=8;VDB=0.0222;AF1=0.5;AC1=1;DP4=1,4,1,2;MQ=60;FQ=16.1;PV4=1,0.0012,1,0.27 GT:PL:GQ 0/1:43,0,127:46 chr1 1374436 . C T 6.2 . DP=19;VDB=0.0140;AF1=0.4999;AC1=1;DP4=7,4,7,0;MQ=60;FQ=8.65;PV4=0.12,9e-16,1,0.15 GT:PL:GQ 0/1:35,0,213:36 chr1 1374834 . A G 6.98 . DP=3;VDB=0.0065;AF1=0.5007;AC1=1;DP4=1,0,1,1;MQ=60;FQ=-4.32;PV4=1,0.024,1,0.24 GT:PL:GQ 0/1:36,0,25:29 chr1 1386016 . A G 166 . DP=27;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,7,7,4;MQ=49;FQ=169;PV4=0.7,0.49,1,1 GT:PL:GQ 0/1:196,0,249:99 chr1 1387348 . C T 101 . DP=21;VDB=0.0014;AF1=0.5;AC1=1;DP4=12,0,7,1;MQ=60;FQ=104;PV4=0.4,0.075,1,1 GT:PL:GQ 0/1:131,0,159:99 chr1 1387667 . C G 181 . DP=114;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,51,58;MQ=59;FQ=-282 GT:PL:GQ 1/1:214,255,0:99 chr1 1387726 . A G 225 . DP=84;VDB=0.0384;AF1=0.5;AC1=1;DP4=14,34,9,21;MQ=60;FQ=225;PV4=1,1,0.058,0.01 GT:PL:GQ 0/1:255,0,255:99 chr1 1387764 . G A 53 . DP=57;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,29,2,19;MQ=59;FQ=56;PV4=0.7,4.9e-24,0.063,1 GT:PL:GQ 0/1:83,0,255:86 chr1 1390875 . C T 156 . DP=16;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,5,3,7;MQ=56;FQ=59;PV4=0.51,0.32,0.24,1 GT:PL:GQ 0/1:186,0,86:89 chr1 1390997 . T G 33.8 . DP=3;VDB=0.0175;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:65,6,0:10 chr1 1391304 . T C 53 . DP=5;VDB=0.0010;AF1=0.5;AC1=1;DP4=1,1,2,1;MQ=56;FQ=17.1;PV4=1,1,0.25,1 GT:PL:GQ 0/1:83,0,44:47 chr1 1391534 . G A 28 . DP=9;VDB=0.0042;AF1=0.5;AC1=1;DP4=4,0,3,1;MQ=31;FQ=31;PV4=1,0.0086,9.8e-10,1 GT:PL:GQ 0/1:58,0,87:61 chr1 1391562 . G A 25 . DP=15;VDB=0.0042;AF1=0.5;AC1=1;DP4=8,2,4,1;MQ=27;FQ=28;PV4=1,9.1e-05,0.063,1 GT:PL:GQ 0/1:55,0,151:58 chr1 1417696 . C G 62.1 . DP=7;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,4;MQ=23;FQ=-45 GT:PL:GQ 1/1:95,18,0:33 chr1 1469289 . G C 49 . DP=14;VDB=0.0042;AF1=0.5;AC1=1;DP4=6,0,8,0;MQ=45;FQ=52;PV4=1,7.2e-06,1.9e-17,0.34 GT:PL:GQ 0/1:79,0,110:82 chr1 1479333 . A G 82 . DP=15;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,2,6,3;MQ=60;FQ=84.9;PV4=1,1.9e-06,1,0.096 GT:PL:GQ 0/1:112,0,130:99 chr1 1509825 . A G 119 . DP=35;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,6,12,3;MQ=59;FQ=122;PV4=0.44,1.2e-09,0.47,0.2 GT:PL:GQ 0/1:149,0,255:99 chr1 1510035 . GGCG GG 23.5 . INDEL;DP=5;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=54;FQ=26.2;PV4=1,0.49,0.21,0.46 GT:PL:GQ 0/1:61,0,73:64 chr1 1551927 . T C 77 . DP=25;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,2,7,3;MQ=60;FQ=80;PV4=0.61,6.5e-10,1,0.1 GT:PL:GQ 0/1:107,0,222:99 chr1 1558792 . T C 72 . DP=3;VDB=0.0217;AF1=1;AC1=2;DP4=0,0,2,1;MQ=52;FQ=-36 GT:PL:GQ 1/1:104,9,0:16 chr1 1560100 . G A 225 . DP=50;VDB=0.0298;AF1=0.5;AC1=1;DP4=14,7,19,10;MQ=60;FQ=225;PV4=1,0.23,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 1562437 . C G 111 . DP=32;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,15,5,9;MQ=59;FQ=114;PV4=0.25,4.8e-11,0.13,0.38 GT:PL:GQ 0/1:141,0,248:99 chr1 1563789 . C A 225 . DP=46;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,10,13,15;MQ=59;FQ=180;PV4=0.33,0.43,0.24,1 GT:PL:GQ 0/1:255,0,207:99 chr1 1575616 . T C 84 . DP=12;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,10,2;MQ=26;FQ=-63 GT:PL:GQ 1/1:117,36,0:69 chr1 1580738 . T A 4.13 . DP=44;VDB=0.0011;AF1=0.4998;AC1=1;DP4=2,23,0,16;MQ=33;FQ=6.2;PV4=0.51,1.5e-16,1,1 GT:PL:GQ 0/1:32,0,187:31 chr1 1580748 . A G 34 . DP=29;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,18,0,8;MQ=35;FQ=37;PV4=1,0.12,0.021,1 GT:PL:GQ 0/1:64,0,158:67 chr1 1581558 . C T 28.3 . DP=5;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,5;MQ=26;FQ=-42 GT:PL:GQ 1/1:61,15,0:27 chr1 1581713 . A C 55 . DP=43;VDB=0.0190;AF1=0.5;AC1=1;DP4=19,0,22,2;MQ=56;FQ=58;PV4=0.5,1.5e-19,0.0016,1 GT:PL:GQ 0/1:85,0,174:88 chr1 1581759 . G A 37 . DP=103;VDB=0.0392;AF1=0.5;AC1=1;DP4=62,11,27,1;MQ=52;FQ=40;PV4=0.17,0.36,3.6e-63,0.076 GT:PL:GQ 0/1:67,0,255:70 chr1 1581881 . T C 88 . DP=109;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,45,19,30;MQ=50;FQ=91;PV4=0.055,1.5e-60,2.7e-18,0.5 GT:PL:GQ 0/1:118,0,255:99 chr1 1581926 . G T 47 . DP=44;VDB=0.0008;AF1=0.5;AC1=1;DP4=1,21,1,21;MQ=49;FQ=50;PV4=1,1.9e-22,9.9e-09,1 GT:PL:GQ 0/1:77,0,207:80 chr1 1582106 . T C 222 . DP=124;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,88,32;MQ=32;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 1582202 . C T 168 . DP=177;VDB=0.0398;AF1=0.5;AC1=1;DP4=39,51,30,52;MQ=42;FQ=171;PV4=0.44,5.8e-36,0.34,0.062 GT:PL:GQ 0/1:198,0,255:99 chr1 1582455 . G A 130 . DP=44;VDB=0.0373;AF1=0.5;AC1=1;DP4=22,5,9,8;MQ=29;FQ=133;PV4=0.087,0.011,0.039,0.091 GT:PL:GQ 0/1:160,0,221:99 chr1 1582616 . T C 16.1 . DP=63;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,35,4,15;MQ=44;FQ=19.1;PV4=1,1.7e-29,0.3,1 GT:PL:GQ 0/1:46,0,255:49 chr1 1582641 . T C 72 . DP=32;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,23,0,8;MQ=39;FQ=75;PV4=1,1,0.2,1 GT:PL:GQ 0/1:102,0,161:99 chr1 1582841 . A G 8.64 . DP=17;VDB=0.0011;AF1=0.5;AC1=1;DP4=11,0,5,1;MQ=19;FQ=11.3;PV4=0.35,0.0021,0.22,1 GT:PL:GQ 0/1:38,0,66:40 chr1 1582844 . G T 30 . DP=18;VDB=0.0025;AF1=0.5;AC1=1;DP4=11,0,5,2;MQ=19;FQ=31.8;PV4=0.14,2e-06,1,1 GT:PL:GQ 0/1:60,0,65:62 chr1 1582880 . G C 67 . DP=32;VDB=0.0216;AF1=0.5;AC1=1;DP4=17,0,11,3;MQ=20;FQ=51;PV4=0.081,1.5e-11,0.49,1 GT:PL:GQ 0/1:97,0,78:81 chr1 1582961 . G C 152 . DP=48;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,9,15,17;MQ=31;FQ=104;PV4=1,1.1e-12,1,1 GT:PL:GQ 0/1:182,0,131:99 chr1 1583003 . C T 64 . DP=57;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,25,5,14;MQ=36;FQ=67;PV4=0.76,2.9e-12,0.012,0.3 GT:PL:GQ 0/1:94,0,255:97 chr1 1583495 . T C 21 . DP=28;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,13,1,8;MQ=48;FQ=24;PV4=0.37,0.076,6.9e-12,1 GT:PL:GQ 0/1:51,0,255:54 chr1 1585597 . A G 222 . DP=64;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,50,12;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 1585642 . G T 222 . DP=102;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,73,22;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 1586752 . T C 222 . DP=39;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,33,5;MQ=59;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 1586953 . G A 19.1 . DP=41;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,17,1,19;MQ=46;FQ=22;PV4=0.6,2.2e-22,1,1 GT:PL:GQ 0/1:49,0,203:52 chr1 1599812 . C T 59 . DP=20;VDB=0.0011;AF1=0.5;AC1=1;DP4=11,2,7,0;MQ=27;FQ=61.9;PV4=0.52,1,1,0.23 GT:PL:GQ 0/1:89,0,104:92 chr1 1599888 . A G 163 . DP=54;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,18,17,3;MQ=30;FQ=154;PV4=0.0033,1,1,1 GT:PL:GQ 0/1:193,0,181:99 chr1 1633003 . C CCG 17.5 . INDEL;DP=8;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,1,3,1;MQ=37;FQ=17.5;PV4=1,1,1,1 GT:PL:GQ 0/1:55,0,55:55 chr1 1644836 . G A 163 . DP=20;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,6,1,13;MQ=39;FQ=67;PV4=1,0.058,1,1 GT:PL:GQ 0/1:193,0,94:97 chr1 1645050 . C T 40.3 . DP=6;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,1,4;MQ=27;FQ=-42 GT:PL:GQ 1/1:73,15,0:27 chr1 1645093 . C T 55.5 . DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,4;MQ=29;FQ=-39 GT:PL:GQ 1/1:88,12,0:21 chr1 1645366 . A G 38.1 . DP=6;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,6;MQ=19;FQ=-45 GT:PL:GQ 1/1:71,18,0:33 chr1 1646074 . A G 11.1 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=23;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr1 1646077 . G T 6.79 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=23;FQ=-33 GT:PL:GQ 1/1:37,6,0:7 chr1 1646113 . G C 19 . DP=3;VDB=0.0130;AF1=1;AC1=2;DP4=0,0,3,0;MQ=21;FQ=-36 GT:PL:GQ 1/1:51,9,0:15 chr1 1646231 . T C 18.8 . DP=2;VDB=0.0122;AF1=1;AC1=2;DP4=0,0,2,0;MQ=29;FQ=-33 GT:PL:GQ 1/1:50,6,0:10 chr1 1646236 . C T 13.9 . DP=2;VDB=0.0082;AF1=1;AC1=2;DP4=0,0,1,1;MQ=26;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr1 1646657 . T C 32 . DP=3;VDB=0.0199;AF1=1;AC1=2;DP4=0,0,0,3;MQ=31;FQ=-36 GT:PL:GQ 1/1:64,9,0:16 chr1 1647778 . C G 67 . DP=83;VDB=0.0025;AF1=0.5;AC1=1;DP4=39,10,26,3;MQ=51;FQ=70;PV4=0.35,1.8e-31,1.7e-21,0.33 GT:PL:GQ 0/1:97,0,255:99 chr1 1647814 . T C 121 . DP=146;VDB=0.0118;AF1=0.5;AC1=1;DP4=54,26,50,14;MQ=50;FQ=124;PV4=0.19,5e-45,7.2e-43,1 GT:PL:GQ 0/1:151,0,255:99 chr1 1647871 . T C 132 . DP=135;VDB=0.0393;AF1=0.5;AC1=1;DP4=36,49,18,27;MQ=52;FQ=135;PV4=0.85,3.9e-18,1.6e-45,1 GT:PL:GQ 0/1:162,0,255:99 chr1 1647893 . CTTTCTTT CTTTCTTTTTCTTT 69.5 . INDEL;DP=115;VDB=0.0398;AF1=0.5;AC1=1;DP4=17,50,4,28;MQ=51;FQ=72.5;PV4=0.19,1,1e-49,1 GT:PL:GQ 0/1:107,0,255:99 chr1 1647928 . A G 148 . DP=86;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,31,11,43;MQ=50;FQ=58;PV4=0.006,1.9e-36,1,1 GT:PL:GQ 0/1:178,0,85:88 chr1 1650787 . T C 225 . DP=141;VDB=0.0392;AF1=0.5;AC1=1;DP4=43,41,44,11;MQ=55;FQ=225;PV4=0.00064,0.0066,7.2e-12,0.38 GT:PL:GQ 0/1:255,0,255:99 chr1 1650797 . A G 153 . DP=150;VDB=0.0398;AF1=0.5;AC1=1;DP4=46,40,45,12;MQ=55;FQ=156;PV4=0.0024,1.3e-33,3.1e-12,0.11 GT:PL:GQ 0/1:183,0,255:99 chr1 1650801 . T C 66 . DP=147;VDB=0.0399;AF1=0.5;AC1=1;DP4=46,39,42,13;MQ=55;FQ=69;PV4=0.012,5.5e-55,1.1e-12,0.36 GT:PL:GQ 0/1:96,0,255:99 chr1 1650807 . T C 93 . DP=147;VDB=0.0380;AF1=0.5;AC1=1;DP4=44,16,46,38;MQ=54;FQ=96;PV4=0.025,5.5e-62,1,1 GT:PL:GQ 0/1:123,0,255:99 chr1 1650832 . A G 188 . DP=160;VDB=0.0380;AF1=0.5;AC1=1;DP4=43,41,42,28;MQ=54;FQ=191;PV4=0.33,1.1e-23,6.9e-11,1 GT:PL:GQ 0/1:218,0,255:99 chr1 1650845 . G A 178 . DP=167;VDB=0.0400;AF1=0.5;AC1=1;DP4=44,34,41,41;MQ=53;FQ=181;PV4=0.43,3.4e-39,1,0.31 GT:PL:GQ 0/1:208,0,255:99 chr1 1650920 . G A 225 . DP=161;VDB=0.0298;AF1=0.5;AC1=1;DP4=42,53,28,33;MQ=49;FQ=225;PV4=0.87,1,2.8e-25,1 GT:PL:GQ 0/1:255,0,255:99 chr1 1650960 . G A 59 . DP=126;VDB=0.0384;AF1=0.5;AC1=1;DP4=24,53,2,43;MQ=49;FQ=62;PV4=0.00041,1.5e-31,5.9e-35,0.011 GT:PL:GQ 0/1:89,0,255:92 chr1 1650996 . T C 70 . DP=75;VDB=0.0053;AF1=0.5;AC1=1;DP4=8,39,0,26;MQ=50;FQ=73;PV4=0.044,1,5.7e-23,1 GT:PL:GQ 0/1:100,0,255:99 chr1 1651003 . G A 27 . DP=66;VDB=0.0042;AF1=0.5;AC1=1;DP4=6,34,0,26;MQ=50;FQ=30;PV4=0.074,1.6e-17,1.6e-22,1 GT:PL:GQ 0/1:57,0,255:60 chr1 1651047 . C T 23 . DP=19;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,11,0,8;MQ=51;FQ=26;PV4=1,4.1e-06,2.9e-05,1 GT:PL:GQ 0/1:53,0,155:56 chr1 1653004 . T C 199 . DP=53;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,42,9;MQ=48;FQ=-181 GT:PL:GQ 1/1:232,154,0:99 chr1 1653028 . C T 222 . DP=66;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,48,14;MQ=51;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 1654013 . C G 97 . DP=9;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,9,0;MQ=29;FQ=-54 GT:PL:GQ 1/1:130,27,0:51 chr1 1654038 . G A 114 . DP=18;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,17,1;MQ=28;FQ=-81 GT:PL:GQ 1/1:147,54,0:99 chr1 1654058 . C T 117 . DP=23;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,21,1;MQ=29;FQ=-93 GT:PL:GQ 1/1:150,66,0:99 chr1 1654065 . AGCG A 149 . INDEL;DP=26;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,23,1;MQ=30;FQ=-107 GT:PL:GQ 1/1:190,72,0:99 chr1 1657021 . T C 19.1 . DP=10;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=38;FQ=22;PV4=1,0.00047,1,0.32 GT:PL:GQ 0/1:49,0,68:52 chr1 1663851 . G C 222 . DP=27;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,16,9;MQ=59;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 1663861 . G A 222 . DP=29;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,16,13;MQ=59;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 1664019 . T C 113 . DP=7;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:146,21,0:39 chr1 1666175 . C T 61 . DP=15;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,2,5,2;MQ=27;FQ=64;PV4=1,1,0.24,0.2 GT:PL:GQ 0/1:91,0,121:94 chr1 1666251 . G A 121 . DP=27;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,8,11,2;MQ=28;FQ=94;PV4=0.011,1,1,1 GT:PL:GQ 0/1:151,0,121:99 chr1 1666338 . G A 148 . DP=17;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,5,12;MQ=44;FQ=-78 GT:PL:GQ 1/1:181,51,0:99 chr1 1669748 . A G 144 . DP=31;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,6;MQ=39;FQ=-117 GT:PL:GQ 1/1:177,90,0:99 chr1 1669964 . G A 27.5 . DP=4;VDB=0.0017;AF1=1;AC1=2;DP4=0,0,0,4;MQ=34;FQ=-39 GT:PL:GQ 1/1:60,12,0:21 chr1 1684374 . tc tCCAc 217 . INDEL;DP=72;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,9,24,12;MQ=60;FQ=209;PV4=0.79,0.018,1,1 GT:PL:GQ 0/1:255,0,244:99 chr1 1684472 . C T 222 . DP=74;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,49;MQ=58;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr1 1685213 . C G 36.5 . DP=4;VDB=0.0017;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:69,12,0:21 chr1 1685921 . TCCCTGGGACCGAAGTCGCCCCACCCTGGG TCCCTGGG 140 . INDEL;DP=13;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,6,3;MQ=29;FQ=-61.5 GT:PL:GQ 1/1:181,27,0:51 chr1 1688192 . A G 222 . DP=20;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,13,6;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr1 1696659 . A G 99 . DP=10;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,9,1;MQ=58;FQ=-57 GT:PL:GQ 1/1:132,30,0:57 chr1 1718642 . C A 30 . DP=20;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,0,11,0;MQ=60;FQ=33;PV4=1,1.9e-12,1,1 GT:PL:GQ 0/1:60,0,140:63 chr1 1737895 . G A 87 . DP=47;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,17,12,4;MQ=60;FQ=90;PV4=0.06,5.4e-16,1,0.32 GT:PL:GQ 0/1:117,0,255:99 chr1 1737900 . C T 72 . DP=47;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,18,12,5;MQ=60;FQ=75;PV4=0.029,1.9e-15,1,0.077 GT:PL:GQ 0/1:102,0,255:99 chr1 1823922 . A G 222 . DP=95;VDB=0.0345;AF1=1;AC1=2;DP4=0,2,35,57;MQ=59;FQ=-248;PV4=0.53,1,1,0.28 GT:PL:GQ 1/1:255,221,0:99 chr1 1846582 . A G 14.9 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:46,6,0:10 chr1 1846765 . G A 202 . DP=43;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,19,21;MQ=60;FQ=-147 GT:PL:GQ 1/1:235,120,0:99 chr1 1847856 . G T 222 . DP=59;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,44,12;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 1848109 . G C 222 . DP=55;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,33,18;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 1849529 . A G 222 . DP=34;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,17;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 1849923 . C A 178 . DP=66;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,17,14,16;MQ=59;FQ=181;PV4=0.81,1.3e-12,1,1 GT:PL:GQ 0/1:208,0,255:99 chr1 1850428 . A G 169 . DP=8;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,3,5;MQ=60;FQ=-51 GT:PL:GQ 1/1:202,24,0:45 chr1 1850627 . cagcggcaggagcggcaggagcggcaggagcggcag cagcggcaggagcggcaggagcggcag 14.4 . INDEL;DP=4;VDB=0.0318;AF1=1;AC1=2;DP4=0,0,0,2;MQ=29;FQ=-40.5 GT:PL:GQ 1/1:53,6,0:10 chr1 1853615 . TCTG TCTGACTG 62.7 . INDEL;DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,5,0;MQ=37;FQ=-49.5 GT:PL:GQ 1/1:103,15,0:27 chr1 1854109 . A G 222 . DP=49;VDB=0.0271;AF1=1;AC1=2;DP4=1,0,24,23;MQ=60;FQ=-142;PV4=1,0.022,1,0.3 GT:PL:GQ 1/1:255,115,0:99 chr1 1855450 . A G 28.8 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:60,6,0:10 chr1 1858309 . T C 193 . DP=108;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,58,44;MQ=60;FQ=-282 GT:PL:GQ 1/1:226,255,0:99 chr1 1859296 . T C 96 . DP=11;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,1,10;MQ=58;FQ=-60 GT:PL:GQ 1/1:129,33,0:63 chr1 1860087 . C T 92.3 . DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:125,15,0:27 chr1 1861582 . C T 176 . DP=64;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,52,8;MQ=60;FQ=-208 GT:PL:GQ 1/1:209,181,0:99 chr1 1870210 . G A 26.5 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:59,12,0:21 chr1 1871979 . G A 149 . DP=10;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,6;MQ=60;FQ=-51 GT:PL:GQ 1/1:182,24,0:45 chr1 1873453 . G A 64.5 . DP=4;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:97,12,0:21 chr1 1873514 . A G 222 . DP=26;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,19,5;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 1873525 . T C 174 . DP=26;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,20,6;MQ=60;FQ=-105 GT:PL:GQ 1/1:207,78,0:99 chr1 1873697 . G A 128 . DP=20;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,15;MQ=59;FQ=-81 GT:PL:GQ 1/1:161,54,0:99 chr1 1873699 . G C 140 . DP=19;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,3,15;MQ=59;FQ=-81 GT:PL:GQ 1/1:173,54,0:99 chr1 1875858 . C G 62.1 . DP=30;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-45 GT:PL:GQ 1/1:95,18,0:33 chr1 1875859 . A G 35.5 . DP=32;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:68,12,0:21 chr1 1878628 . C T 67 . DP=9;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:100,24,0:45 chr1 1886756 . GCTGGTGCGCGTCT GCTGGTGCGCGTCTGGTGCGCGTCT 5.08 . INDEL;DP=10;VDB=0.0164;AF1=0.5;AC1=1;DP4=4,1,3,0;MQ=54;FQ=7.36;PV4=1,0.49,0.017,0.45 GT:PL:GQ 0/1:41,0,207:41 chr1 1887019 . A G 218 . DP=71;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,44;MQ=60;FQ=-235 GT:PL:GQ 1/1:251,208,0:99 chr1 1956362 . G A 222 . DP=66;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,41,23;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr1 1957037 . T C 222 . DP=169;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,89,79;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 1960926 . T C 44.3 . DP=5;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:77,15,0:27 chr1 1987993 . T C 111 . DP=19;VDB=0.0118;AF1=0.5;AC1=1;DP4=7,5,3,3;MQ=60;FQ=114;PV4=1,1,1,1 GT:PL:GQ 0/1:141,0,254:99 chr1 1991162 . G A 149 . DP=20;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,10,3,6;MQ=60;FQ=151;PV4=0.28,0.25,1,0.47 GT:PL:GQ 0/1:179,0,186:99 chr1 1991173 . A G 38 . DP=17;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,9,1,6;MQ=60;FQ=41;PV4=1,1.3e-08,1,1 GT:PL:GQ 0/1:68,0,189:71 chr1 2005740 . T C 222 . DP=21;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,4,14;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr1 2106840 . T C 68 . DP=9;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:101,24,0:45 chr1 2106896 . T C 14.1 . DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:46,9,0:14 chr1 2118539 . T C 177 . DP=17;VDB=0.0042;AF1=0.5;AC1=1;DP4=6,1,8,2;MQ=60;FQ=117;PV4=1,1,1,1 GT:PL:GQ 0/1:207,0,144:99 chr1 2144982 . G T 122 . DP=25;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,10,3,10;MQ=59;FQ=125;PV4=0.6,6.1e-08,0.18,1 GT:PL:GQ 0/1:152,0,173:99 chr1 2145028 . G A 21 . DP=11;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,5,1,4;MQ=60;FQ=24;PV4=1,8.7e-05,1,1 GT:PL:GQ 0/1:51,0,106:54 chr1 2234632 . G A 225 . DP=31;VDB=0.0140;AF1=0.5;AC1=1;DP4=10,1,15,5;MQ=60;FQ=125;PV4=0.38,1,1,1 GT:PL:GQ 0/1:255,0,152:99 chr1 2235656 . G A 117 . DP=20;VDB=0.0271;AF1=0.5129;AC1=1;DP4=1,1,12,5;MQ=60;FQ=-14.2;PV4=1,0.00032,1,0.33 GT:PL:GQ 0/1:147,0,13:16 chr1 2238093 . C A 6.98 . DP=11;VDB=0.0114;AF1=0.4999;AC1=1;DP4=4,5,1,1;MQ=60;FQ=9.53;PV4=1,1,1,1 GT:PL:GQ 0/1:36,0,177:37 chr1 2286947 . A G 161 . DP=28;VDB=0.0373;AF1=0.5;AC1=1;DP4=4,7,7,9;MQ=60;FQ=164;PV4=1,1.6e-09,1,0.073 GT:PL:GQ 0/1:191,0,212:99 chr1 2328714 . A G 83 . DP=12;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:116,33,0:63 chr1 2337032 . C T 102 . DP=8;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,7,0;MQ=57;FQ=-48 GT:PL:GQ 1/1:135,21,0:39 chr1 2337194 . C T 137 . DP=37;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,6,7,15;MQ=59;FQ=140;PV4=0.29,1.1e-09,1,1 GT:PL:GQ 0/1:167,0,225:99 chr1 2340200 . T C 222 . DP=73;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,42,29;MQ=59;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr1 2399119 . A G 122 . DP=27;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,4,7,10;MQ=60;FQ=125;PV4=0.44,1.1e-10,1,1 GT:PL:GQ 0/1:152,0,192:99 chr1 2399149 . A G 95 . DP=19;VDB=0.0099;AF1=0.5;AC1=1;DP4=3,3,4,9;MQ=60;FQ=96.8;PV4=0.62,1.6e-08,1,0.06 GT:PL:GQ 0/1:125,0,130:99 chr1 2409892 . A G 84 . DP=24;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,5,8,2;MQ=60;FQ=87;PV4=0.38,1.9e-09,1,0.29 GT:PL:GQ 0/1:114,0,244:99 chr1 2411451 . A G 45 . DP=32;VDB=0.0359;AF1=0.5;AC1=1;DP4=8,13,5,5;MQ=59;FQ=48;PV4=0.7,3.2e-07,1,0.24 GT:PL:GQ 0/1:75,0,255:78 chr1 2420590 . T C 25 . DP=16;VDB=0.0099;AF1=0.5;AC1=1;DP4=8,2,5,1;MQ=60;FQ=28;PV4=1,3.3e-07,1,1 GT:PL:GQ 0/1:55,0,201:58 chr1 2420913 . A G 47.5 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:80,12,0:21 chr1 2422614 . G A 88 . DP=28;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,6,8,3;MQ=60;FQ=91;PV4=0.69,3.4e-08,1,1 GT:PL:GQ 0/1:118,0,255:99 chr1 2426149 . C A 24.1 . DP=5;VDB=0.0027;AF1=0.505;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-10.4;PV4=1,0.035,1,1 GT:PL:GQ 0/1:54,0,17:20 chr1 2428874 . T C 51 . DP=18;VDB=0.0140;AF1=0.5;AC1=1;DP4=11,1,5,0;MQ=60;FQ=54;PV4=1,0.35,1,1 GT:PL:GQ 0/1:81,0,179:84 chr1 2429090 . G A 83 . DP=22;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,7,1,12;MQ=58;FQ=86;PV4=1,0.00019,1,1 GT:PL:GQ 0/1:113,0,144:99 chr1 2431057 . C T 96 . DP=46;VDB=0.0345;AF1=0.5;AC1=1;DP4=20,7,15,4;MQ=60;FQ=99;PV4=1,4.4e-18,1,0.45 GT:PL:GQ 0/1:126,0,255:99 chr1 2441358 . T C 24 . DP=18;VDB=0.0190;AF1=0.5;AC1=1;DP4=8,4,5,1;MQ=60;FQ=27;PV4=0.61,1.1e-06,1,1 GT:PL:GQ 0/1:54,0,228:57 chr1 2441392 . T C 185 . DP=25;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,6,9,3;MQ=60;FQ=187;PV4=0.41,1,1,0.29 GT:PL:GQ 0/1:215,0,222:99 chr1 2442953 . C A 132 . DP=28;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,7,4,10;MQ=60;FQ=135;PV4=0.44,1.1e-07,1,1 GT:PL:GQ 0/1:162,0,255:99 chr1 2443212 . G A 4.13 . DP=12;VDB=0.0161;AF1=0.4998;AC1=1;DP4=0,8,1,3;MQ=60;FQ=6.2;PV4=0.33,2.8e-08,1,0.2 GT:PL:GQ 0/1:32,0,153:31 chr1 2445406 . A G 101 . DP=30;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,5,10,6;MQ=60;FQ=104;PV4=1,3.4e-11,1,1 GT:PL:GQ 0/1:131,0,238:99 chr1 2446880 . A G 132 . DP=34;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,14,3,16;MQ=59;FQ=133;PV4=0.24,3e-13,0.2,0.33 GT:PL:GQ 0/1:162,0,165:99 chr1 2452569 . T C 8.64 . DP=12;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,0,6,0;MQ=60;FQ=11.3;PV4=1,4.5e-12,1,0.15 GT:PL:GQ 0/1:38,0,127:40 chr1 2458010 . G C 41 . DP=24;VDB=0.0384;AF1=0.5;AC1=1;DP4=5,12,4,3;MQ=59;FQ=44;PV4=0.36,0.0001,1,1 GT:PL:GQ 0/1:71,0,253:74 chr1 2487663 . C A 188 . DP=63;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,41,19;MQ=60;FQ=-208 GT:PL:GQ 1/1:221,181,0:99 chr1 2487766 . T C 222 . DP=67;VDB=0.0393;AF1=1;AC1=2;DP4=1,0,28,35;MQ=59;FQ=-190;PV4=0.45,0.09,1,0.17 GT:PL:GQ 1/1:255,163,0:99 chr1 2488153 . A G 139 . DP=23;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,3,18;MQ=59;FQ=-90 GT:PL:GQ 1/1:172,63,0:99 chr1 2490898 . C A 222 . DP=73;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,38,32;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr1 2490942 . C A 222 . DP=86;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,54,28;MQ=60;FQ=-274 GT:PL:GQ 1/1:255,247,0:99 chr1 2491205 . C T 201 . DP=70;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,41,26;MQ=59;FQ=-203;PV4=0.4,6.2e-05,1,1 GT:PL:GQ 1/1:234,176,0:99 chr1 2519989 . G T 192 . DP=86;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,24,20,26;MQ=59;FQ=195;PV4=0.66,4.1e-21,1,0.11 GT:PL:GQ 0/1:222,0,255:99 chr1 2520302 . T C 222 . DP=43;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,26,16;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 2520500 . G A 185 . DP=9;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,7;MQ=60;FQ=-54 GT:PL:GQ 1/1:218,27,0:51 chr1 2520527 . T C 33.3 . DP=5;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:66,15,0:27 chr1 2523212 . G C 21.8 . DP=2;VDB=0.0173;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:53,6,0:10 chr1 2524037 . C A 8.44 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,1;MQ=24;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr1 2524038 . C T 8.44 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,1;MQ=24;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr1 2524041 . G A 13 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,1;MQ=24;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr1 2524205 . C T 177 . DP=41;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,16,20;MQ=59;FQ=-135 GT:PL:GQ 1/1:210,108,0:99 chr1 2526746 . A G 222 . DP=52;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,29,22;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 2535613 . C A 166 . DP=27;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,22,4;MQ=60;FQ=-105 GT:PL:GQ 1/1:199,78,0:99 chr1 2535758 . A G 222 . DP=38;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,27;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 2537095 . G A 169 . DP=24;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,14;MQ=59;FQ=-93 GT:PL:GQ 1/1:202,66,0:99 chr1 2537838 . C T 216 . DP=18;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,2,16;MQ=60;FQ=-81 GT:PL:GQ 1/1:249,54,0:99 chr1 2538349 . G A 43.1 . DP=6;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:76,18,0:33 chr1 2541269 . A G 222 . DP=58;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,40;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr1 2542653 . A G 222 . DP=35;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,21,12;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 2573199 . A G 216 . DP=25;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,14,9;MQ=60;FQ=-96 GT:PL:GQ 1/1:249,69,0:99 chr1 2700372 . C T 140 . DP=21;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,14;MQ=60;FQ=-84 GT:PL:GQ 1/1:173,57,0:99 chr1 2938989 . G A 60 . DP=37;VDB=0.0373;AF1=0.5;AC1=1;DP4=7,14,2,11;MQ=60;FQ=63;PV4=0.43,6.9e-15,1,0.33 GT:PL:GQ 0/1:90,0,255:93 chr1 2983963 . G A 184 . DP=55;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,9,18,13;MQ=60;FQ=187;PV4=1,3.2e-08,1,1 GT:PL:GQ 0/1:214,0,255:99 chr1 2984087 . C A 133 . DP=46;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,18,4,18;MQ=60;FQ=136;PV4=1,2.6e-06,1,0.4 GT:PL:GQ 0/1:163,0,223:99 chr1 3312963 . C T 225 . DP=82;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,29,10,26;MQ=59;FQ=225;PV4=0.81,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 3328358 . T C 222 . DP=82;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,40,41;MQ=59;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr1 3328659 . C T 110 . DP=74;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,20,15,23;MQ=59;FQ=113;PV4=1,1.6e-27,1,1 GT:PL:GQ 0/1:140,0,255:99 chr1 3329384 . C T 109 . DP=25;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,10,3,9;MQ=59;FQ=112;PV4=1,7.1e-05,0.15,1 GT:PL:GQ 0/1:139,0,205:99 chr1 3383665 . G A 93 . DP=31;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,30,1;MQ=60;FQ=-120 GT:PL:GQ 1/1:126,93,0:99 chr1 3383898 . A G 111 . DP=20;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,17;MQ=60;FQ=-81 GT:PL:GQ 1/1:144,54,0:99 chr1 3385256 . A G 53 . DP=4;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:85,9,0:16 chr1 3385330 . T C 179 . DP=40;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,24,14;MQ=59;FQ=-141 GT:PL:GQ 1/1:212,114,0:99 chr1 3388269 . G A 98 . DP=50;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,4,19,3;MQ=59;FQ=101;PV4=1,8.4e-16,0.064,0.37 GT:PL:GQ 0/1:128,0,255:99 chr1 3389727 . C T 222 . DP=66;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,31,32;MQ=60;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr1 3390238 . T A 162 . DP=32;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,10,21;MQ=60;FQ=-120 GT:PL:GQ 1/1:195,93,0:99 chr1 3394456 . T C 134 . DP=13;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,11,2;MQ=60;FQ=-66 GT:PL:GQ 1/1:167,39,0:75 chr1 3394640 . A G 198 . DP=34;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,23;MQ=59;FQ=-123 GT:PL:GQ 1/1:231,96,0:99 chr1 3394674 . T C 140 . DP=17;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,2,13;MQ=58;FQ=-72 GT:PL:GQ 1/1:173,45,0:87 chr1 3395039 . G A 222 . DP=68;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,29,39;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr1 3395973 . ACCCCC ACCC 214 . INDEL;DP=41;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,27,10;MQ=59;FQ=-146 GT:PL:GQ 1/1:255,111,0:99 chr1 3397188 . T C 88 . DP=17;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,2,15;MQ=60;FQ=-78 GT:PL:GQ 1/1:121,51,0:99 chr1 3407369 . G A 30 . DP=11;VDB=0.0393;AF1=0.5;AC1=1;DP4=4,1,6,0;MQ=60;FQ=33;PV4=0.45,4.2e-05,1,0.3 GT:PL:GQ 0/1:60,0,124:63 chr1 3410229 . G A 64 . DP=20;VDB=0.0025;AF1=0.5;AC1=1;DP4=8,0,9,2;MQ=60;FQ=67;PV4=0.49,5.6e-10,1,1 GT:PL:GQ 0/1:94,0,139:97 chr1 3414105 . C T 64 . DP=16;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,5,4,4;MQ=60;FQ=67;PV4=1,1e-06,1,1 GT:PL:GQ 0/1:94,0,178:97 chr1 3416449 . C A 66 . DP=21;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,5,1,10;MQ=60;FQ=69;PV4=0.063,5e-08,1,0.21 GT:PL:GQ 0/1:96,0,220:99 chr1 3417131 . A G 225 . DP=40;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,10,13,6;MQ=59;FQ=225;PV4=0.33,0.21,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 3417960 . G A 79 . DP=23;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,5,1,10;MQ=59;FQ=82;PV4=0.063,4.2e-08,0.18,0.15 GT:PL:GQ 0/1:109,0,209:99 chr1 3418565 . T C 222 . DP=16;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,3,12;MQ=52;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr1 3418613 . CCG C 31.4 . INDEL;DP=5;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,3;MQ=52;FQ=-43.5 GT:PL:GQ 1/1:71,9,0:16 chr1 3421658 . A T 12.3 . DP=7;VDB=0.0149;AF1=0.5;AC1=1;DP4=3,1,3,0;MQ=57;FQ=15.1;PV4=1,0.0057,1,0.43 GT:PL:GQ 0/1:42,0,105:44 chr1 3428160 . T G 161 . DP=73;VDB=0.0398;AF1=0.5;AC1=1;DP4=26,9,27,8;MQ=60;FQ=164;PV4=1,4.8e-16,1,1 GT:PL:GQ 0/1:191,0,255:99 chr1 3428608 . G A 171 . DP=27;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,7,8,3;MQ=60;FQ=174;PV4=0.45,0.4,1,1 GT:PL:GQ 0/1:201,0,255:99 chr1 3440647 . T C 149 . DP=16;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,13,3;MQ=60;FQ=-75 GT:PL:GQ 1/1:182,48,0:93 chr1 3496479 . T C 202 . DP=16;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,9;MQ=57;FQ=-75 GT:PL:GQ 1/1:235,48,0:93 chr1 3518944 . T C 88 . DP=12;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:121,36,0:69 chr1 3527944 . C G 81.1 . DP=6;VDB=0.0343;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-45 GT:PL:GQ 1/1:114,18,0:33 chr1 3528082 . T C 27 . DP=3;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:59,9,0:16 chr1 3548136 . T C 222 . DP=41;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,25;MQ=59;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 3566625 . AGCAGGCTG A 59.7 . INDEL;DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,5;MQ=29;FQ=-49.5 GT:PL:GQ 1/1:100,15,0:27 chr1 3599514 . C T 174 . DP=28;VDB=0.0033;AF1=0.5;AC1=1;DP4=6,3,18,1;MQ=59;FQ=137;PV4=0.084,0.45,1,1 GT:PL:GQ 0/1:204,0,164:99 chr1 3599750 . TGGGGGGG TGGGGGG 18.5 . INDEL;DP=28;VDB=0.0298;AF1=0.5004;AC1=1;DP4=1,8,2,13;MQ=59;FQ=-7.4;PV4=1,0.11,1,1 GT:PL:GQ 0/1:56,0,28:31 chr1 3607520 . G A 222 . DP=38;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,18,16;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 3638674 . C T 222 . DP=127;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,36,83;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 3640085 . C G 58 . DP=12;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,9;MQ=58;FQ=-57 GT:PL:GQ 1/1:91,30,0:57 chr1 3644085 . G A 23 . DP=3;VDB=0.0089;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:55,9,0:15 chr1 3644349 . A G 55 . DP=10;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:88,27,0:51 chr1 3644374 . A G 29.3 . DP=5;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:62,15,0:27 chr1 3645835 . C A 7.59 . DP=3;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr1 3645844 . G A 55 . DP=3;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:87,9,0:16 chr1 3646137 . C T 173 . DP=50;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,14,31;MQ=59;FQ=-133;PV4=1,0.0031,0.42,0.24 GT:PL:GQ 1/1:206,106,0:99 chr1 3646192 . G A 163 . DP=46;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,15,27;MQ=59;FQ=-116;PV4=1,1.9e-07,0.41,0.49 GT:PL:GQ 1/1:196,89,0:99 chr1 3646214 . T C 222 . DP=43;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,19,23;MQ=58;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 3646291 . G A 222 . DP=37;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,22;MQ=58;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 3647962 . T C 222 . DP=22;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,18,4;MQ=59;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 3677933 . T C 122 . DP=26;VDB=0.0014;AF1=0.5;AC1=1;DP4=8,10,1,7;MQ=60;FQ=125;PV4=0.19,1,1,1 GT:PL:GQ 0/1:152,0,255:99 chr1 3679139 . T C 50 . DP=10;VDB=0.0284;AF1=0.5;AC1=1;DP4=3,2,3,2;MQ=60;FQ=53;PV4=1,2.4e-05,1,0.21 GT:PL:GQ 0/1:80,0,133:83 chr1 3683690 . A C 25 . DP=11;VDB=0.0081;AF1=0.5;AC1=1;DP4=4,0,7,0;MQ=60;FQ=28;PV4=1,3.2e-05,1,1 GT:PL:GQ 0/1:55,0,90:58 chr1 3698017 . G A 10.4 . DP=22;VDB=0.0398;AF1=0.5;AC1=1;DP4=10,3,6,1;MQ=60;FQ=13.2;PV4=1,1.4e-10,1,1 GT:PL:GQ 0/1:40,0,231:42 chr1 3698224 . G C 61 . DP=13;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,4,0,9;MQ=60;FQ=53.6;PV4=1,2.7e-05,1,1 GT:PL:GQ 0/1:91,0,81:84 chr1 3701580 . G C 56.1 . DP=6;VDB=0.0001;AF1=0.5064;AC1=1;DP4=1,0,2,3;MQ=60;FQ=-11.3;PV4=1,0.0052,1,1 GT:PL:GQ 0/1:86,0,16:19 chr1 3701663 . T C 64 . DP=13;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,2,4,0;MQ=60;FQ=67;PV4=0.52,1,1,1 GT:PL:GQ 0/1:94,0,166:97 chr1 3701832 . C A 3.01 . DP=7;VDB=0.0204;AF1=0.4997;AC1=1;DP4=2,2,0,3;MQ=57;FQ=4.77;PV4=0.43,0.0021,1,0.27 GT:PL:GQ 0/1:30,0,108:28 chr1 3731959 . C T 225 . DP=100;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,19,20,29;MQ=60;FQ=225;PV4=0.21,0.3,1,0.13 GT:PL:GQ 0/1:255,0,255:99 chr1 3731965 . G A 225 . DP=103;VDB=0.0392;AF1=0.5;AC1=1;DP4=27,20,25,28;MQ=60;FQ=225;PV4=0.32,1,0.17,0.31 GT:PL:GQ 0/1:255,0,255:99 chr1 3732103 . T C 113 . DP=70;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,29,7,20;MQ=60;FQ=116;PV4=1,1.8e-18,1,1 GT:PL:GQ 0/1:143,0,255:99 chr1 3732172 . C T 114 . DP=18;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,10,1,7;MQ=60;FQ=115;PV4=0.44,0.12,1,1 GT:PL:GQ 0/1:144,0,147:99 chr1 3732707 . T C 163 . DP=10;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,7,1;MQ=57;FQ=-51 GT:PL:GQ 1/1:196,24,0:45 chr1 3732782 . T C 84 . DP=15;VDB=0.0393;AF1=0.5003;AC1=1;DP4=2,0,6,6;MQ=60;FQ=4.13;PV4=0.47,1e-05,1,0.42 GT:PL:GQ 0/1:114,0,29:32 chr1 3742257 . C T 44 . DP=7;VDB=0.0019;AF1=0.5032;AC1=1;DP4=1,0,6,0;MQ=60;FQ=-8.63;PV4=1,0.00017,1,0.21 GT:PL:GQ 0/1:74,0,19:22 chr1 3743132 . T C 126 . DP=17;VDB=0.0001;AF1=0.5;AC1=1;DP4=7,0,10,0;MQ=60;FQ=97;PV4=1,1,1,1 GT:PL:GQ 0/1:156,0,124:99 chr1 3743151 . G A 151 . DP=41;VDB=0.0025;AF1=0.5;AC1=1;DP4=20,0,20,0;MQ=60;FQ=149;PV4=1,1,1,1 GT:PL:GQ 0/1:181,0,178:99 chr1 3743433 . Tgg TGgg 214 . INDEL;DP=42;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,34;MQ=60;FQ=-152 GT:PL:GQ 1/1:255,117,0:99 chr1 3745787 . T C 117 . DP=66;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,12,22,9;MQ=60;FQ=120;PV4=0.61,7.1e-20,1,0.49 GT:PL:GQ 0/1:147,0,255:99 chr1 3746583 . G T 10.4 . DP=20;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,10,1,6;MQ=60;FQ=13.2;PV4=1,1.3e-10,1,1 GT:PL:GQ 0/1:40,0,212:42 chr1 3746589 . C G 222 . DP=16;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,3,13;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 3747603 . T C 56.3 . DP=5;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,5,0;MQ=55;FQ=-42 GT:PL:GQ 1/1:89,15,0:27 chr1 3753013 . G C 11.1 . DP=2;VDB=0.0122;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr1 3753136 . A T 109 . DP=49;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,8,16,4;MQ=59;FQ=112;PV4=0.74,1e-18,1,0.41 GT:PL:GQ 0/1:139,0,255:99 chr1 3755675 . T C 222 . DP=183;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,79,98;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 3756120 . A G 225 . DP=53;VDB=0.0216;AF1=0.5;AC1=1;DP4=26,0,24,3;MQ=60;FQ=159;PV4=0.24,0.076,1,1 GT:PL:GQ 0/1:255,0,186:99 chr1 3759760 . C A 138 . DP=35;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,10,5,10;MQ=59;FQ=141;PV4=0.5,5.4e-09,1,0.15 GT:PL:GQ 0/1:168,0,255:99 chr1 3759784 . A G 212 . DP=27;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,8,18;MQ=58;FQ=-105 GT:PL:GQ 1/1:245,78,0:99 chr1 3761479 . C T 207 . DP=35;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,9,6,7;MQ=59;FQ=210;PV4=0.73,1,1,1 GT:PL:GQ 0/1:237,0,255:99 chr1 3761650 . A G 49.5 . DP=4;VDB=0.0110;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:82,12,0:21 chr1 3765424 . G T 14.2 . DP=14;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,6,0,7;MQ=60;FQ=17.1;PV4=1,1.4e-09,1,1 GT:PL:GQ 0/1:44,0,160:47 chr1 3774130 . A G 225 . DP=40;VDB=0.0398;AF1=0.5;AC1=1;DP4=15,7,10,7;MQ=60;FQ=225;PV4=0.74,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 3774138 . T C 225 . DP=42;VDB=0.0271;AF1=0.5;AC1=1;DP4=15,9,8,8;MQ=59;FQ=225;PV4=0.52,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 3774296 . A G 4.13 . DP=12;VDB=0.0116;AF1=0.4998;AC1=1;DP4=1,7,0,3;MQ=58;FQ=6.2;PV4=1,0.00037,1,1 GT:PL:GQ 0/1:32,0,155:31 chr1 3774312 . T C 3.54 . DP=10;VDB=0.0116;AF1=0.4998;AC1=1;DP4=1,6,0,3;MQ=60;FQ=5.47;PV4=1,0.0028,1,1 GT:PL:GQ 0/1:31,0,150:30 chr1 3775454 . C G 108 . DP=15;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,3,11;MQ=58;FQ=-69 GT:PL:GQ 1/1:141,42,0:81 chr1 3776989 . C T 6.2 . DP=11;VDB=0.0017;AF1=0.4999;AC1=1;DP4=6,1,3,1;MQ=60;FQ=8.65;PV4=1,1.8e-07,1,1 GT:PL:GQ 0/1:35,0,166:36 chr1 3786189 . G A 54 . DP=21;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,3,6,1;MQ=60;FQ=57;PV4=1,0.0001,1,1 GT:PL:GQ 0/1:84,0,224:87 chr1 3788968 . G A 103 . DP=23;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,2,9,0;MQ=60;FQ=106;PV4=0.49,1,1,0.48 GT:PL:GQ 0/1:133,0,186:99 chr1 3789195 . T C 222 . DP=55;VDB=0.0393;AF1=0.5;AC1=1;DP4=5,22,7,18;MQ=56;FQ=223;PV4=0.52,1,0.0031,1 GT:PL:GQ 0/1:252,0,255:99 chr1 3789229 . C T 22 . DP=34;VDB=0.0004;AF1=0.5;AC1=1;DP4=2,26,3,3;MQ=56;FQ=25;PV4=0.029,0.18,5.8e-05,0.22 GT:PL:GQ 0/1:52,0,228:55 chr1 3800242 . A G 172 . DP=96;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,22,25,19;MQ=60;FQ=175;PV4=1,2.7e-31,1,1 GT:PL:GQ 0/1:202,0,255:99 chr1 3807593 . G C 222 . DP=100;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,43,53;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 4772717 . G A 165 . DP=39;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,9,30;MQ=60;FQ=-144 GT:PL:GQ 1/1:198,117,0:99 chr1 4829835 . A G 41 . DP=11;VDB=0.0000;AF1=0.5;AC1=1;DP4=7,0,3,0;MQ=60;FQ=44;PV4=1,1,1,0.12 GT:PL:GQ 0/1:71,0,129:74 chr1 4834420 . C T 49 . DP=17;VDB=0.0033;AF1=0.5;AC1=1;DP4=6,1,9,1;MQ=60;FQ=52;PV4=1,5.4e-10,1,0.21 GT:PL:GQ 0/1:79,0,156:82 chr1 5922834 . C A 91 . DP=29;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,11,5,7;MQ=60;FQ=94;PV4=1,7.2e-12,1,1 GT:PL:GQ 0/1:121,0,255:99 chr1 5925371 . G A 10.2 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:41,6,0:8 chr1 5926507 . T C 222 . DP=53;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,32;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 5928133 . C T 61 . DP=21;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,8,2,7;MQ=60;FQ=64;PV4=1,2.6e-09,1,0.39 GT:PL:GQ 0/1:91,0,220:94 chr1 5934490 . A G 222 . DP=61;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,39,21;MQ=60;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr1 5934500 . T C 225 . DP=67;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,12,19,15;MQ=60;FQ=225;PV4=0.8,1,1,0.43 GT:PL:GQ 0/1:255,0,255:99 chr1 5934837 . C T 17.1 . DP=8;VDB=0.0011;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=19.4;PV4=1,7.2e-07,1,0.093 GT:PL:GQ 0/1:47,0,55:49 chr1 5935162 . A T 222 . DP=17;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,5,12;MQ=57;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr1 5935222 . T C 8.64 . DP=10;VDB=0.0149;AF1=0.5;AC1=1;DP4=1,6,0,3;MQ=60;FQ=11.3;PV4=1,0.026,1,1 GT:PL:GQ 0/1:38,0,148:40 chr1 5937327 . C T 122 . DP=56;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,22,10,9;MQ=60;FQ=125;PV4=0.41,7.6e-11,0.082,1 GT:PL:GQ 0/1:152,0,255:99 chr1 5937391 . C T 207 . DP=39;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,17,6,8;MQ=60;FQ=210;PV4=0.49,0.42,1,1 GT:PL:GQ 0/1:237,0,255:99 chr1 5939544 . T G 82 . DP=86;VDB=0.0345;AF1=0.5;AC1=1;DP4=35,14,23,9;MQ=59;FQ=85;PV4=1,5.3e-15,0.38,1 GT:PL:GQ 0/1:112,0,255:99 chr1 5947308 . G A 63 . DP=28;VDB=0.0025;AF1=0.5;AC1=1;DP4=16,1,10,1;MQ=60;FQ=66;PV4=1,6.3e-14,1,0.48 GT:PL:GQ 0/1:93,0,211:96 chr1 5948677 . G A 58 . DP=61;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,16,14,5;MQ=60;FQ=61;PV4=0.39,2e-23,1,1 GT:PL:GQ 0/1:88,0,255:91 chr1 5964991 . T C 126 . DP=9;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,3,1,5;MQ=60;FQ=48;PV4=1,1,1,1 GT:PL:GQ 0/1:156,0,75:78 chr1 5965381 . C T 148 . DP=94;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,20,30,17;MQ=59;FQ=151;PV4=0.52,6.3e-25,0.043,1 GT:PL:GQ 0/1:178,0,255:99 chr1 5987696 . T C 169 . DP=83;VDB=0.0399;AF1=0.5;AC1=1;DP4=20,23,15,20;MQ=60;FQ=172;PV4=0.82,2.2e-16,1,1 GT:PL:GQ 0/1:199,0,255:99 chr1 6038583 . G C 10.4 . DP=7;VDB=0.0017;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=13.2;PV4=1,3.4e-05,1,1 GT:PL:GQ 0/1:40,0,79:42 chr1 6101771 . C T 103 . DP=28;VDB=0.0216;AF1=0.5;AC1=1;DP4=11,1,10,5;MQ=60;FQ=106;PV4=0.18,4.6e-11,1,1 GT:PL:GQ 0/1:133,0,181:99 chr1 6145365 . A G 67 . DP=9;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:100,27,0:51 chr1 6149053 . C T 27 . DP=18;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,9,2,3;MQ=59;FQ=30;PV4=1,6.5e-06,0.054,1 GT:PL:GQ 0/1:57,0,236:60 chr1 6154417 . C T 21 . DP=4;VDB=0.0130;AF1=0.5005;AC1=1;DP4=1,0,2,1;MQ=60;FQ=-3.01;PV4=1,0.026,1,1 GT:PL:GQ 0/1:51,0,27:30 chr1 6157282 . C T 12.3 . DP=6;VDB=0.0070;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=14.9;PV4=1,0.0017,1,0.12 GT:PL:GQ 0/1:42,0,54:44 chr1 6157297 . T C 13.2 . DP=15;VDB=0.0099;AF1=0.5;AC1=1;DP4=9,0,4,1;MQ=60;FQ=16.1;PV4=0.36,3.7e-06,1,1 GT:PL:GQ 0/1:43,0,143:46 chr1 6157434 . C T 105 . DP=77;VDB=0.0322;AF1=0.5;AC1=1;DP4=25,13,24,13;MQ=59;FQ=108;PV4=1,6.5e-30,0.49,1 GT:PL:GQ 0/1:135,0,255:99 chr1 6158562 . A G 222 . DP=68;VDB=0.0322;AF1=1;AC1=2;DP4=1,0,34,29;MQ=59;FQ=-179;PV4=1,0.19,0.41,0.24 GT:PL:GQ 1/1:255,152,0:99 chr1 6162054 . T C 80 . DP=20;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,1,18;MQ=60;FQ=-84 GT:PL:GQ 1/1:113,57,0:99 chr1 6170424 . CG C 217 . INDEL;DP=53;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,12,12,12;MQ=60;FQ=217;PV4=0.78,0.00028,1,0.42 GT:PL:GQ 0/1:255,0,255:99 chr1 6184092 . A G 108 . DP=18;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,2,7,3;MQ=60;FQ=107;PV4=1,0.00011,1,0.032 GT:PL:GQ 0/1:138,0,136:99 chr1 6184286 . A G 36 . DP=3;VDB=0.0186;AF1=0.502;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-6.96;PV4=1,1,1,1 GT:PL:GQ 0/1:66,0,21:24 chr1 6239937 . cg cGg 83.7 . INDEL;DP=5;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:124,15,0:27 chr1 6257856 . G A 138 . DP=44;VDB=0.0140;AF1=0.5;AC1=1;DP4=8,16,10,10;MQ=59;FQ=141;PV4=0.36,1.7e-17,0.14,1 GT:PL:GQ 0/1:168,0,255:99 chr1 6272137 . A G 54 . DP=25;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,5,6,5;MQ=59;FQ=57;PV4=1,3.1e-11,0.18,1 GT:PL:GQ 0/1:84,0,213:87 chr1 6278414 . A G 189 . DP=64;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,19,15,17;MQ=59;FQ=192;PV4=0.19,3.4e-08,0.096,1 GT:PL:GQ 0/1:219,0,255:99 chr1 6279370 . G C 34 . DP=23;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,10,3,6;MQ=60;FQ=37;PV4=1,1.8e-08,1,0.32 GT:PL:GQ 0/1:64,0,249:67 chr1 6313938 . C T 151 . DP=44;VDB=0.0393;AF1=0.5;AC1=1;DP4=11,16,6,7;MQ=60;FQ=154;PV4=1,0.082,1,0.32 GT:PL:GQ 0/1:181,0,255:99 chr1 6314822 . T C 225 . DP=54;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,7,15,22;MQ=60;FQ=126;PV4=1,1,1,0.28 GT:PL:GQ 0/1:255,0,153:99 chr1 6501152 . C T 72 . DP=7;VDB=0.0373;AF1=0.5;AC1=1;DP4=1,1,1,3;MQ=60;FQ=23;PV4=1,0.44,1,1 GT:PL:GQ 0/1:102,0,50:53 chr1 6530965 . CGGG CGGGG 214 . INDEL;DP=16;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,8,8;MQ=59;FQ=-82.5 GT:PL:GQ 1/1:255,48,0:93 chr1 6545390 . A T 50 . DP=12;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,3,4,1;MQ=60;FQ=53;PV4=0.58,1.2e-05,1,1 GT:PL:GQ 0/1:80,0,164:83 chr1 6557009 . A C 225 . DP=30;VDB=0.0398;AF1=0.5;AC1=1;DP4=8,2,12,6;MQ=59;FQ=152;PV4=0.67,0.089,0.23,0.07 GT:PL:GQ 0/1:255,0,179:99 chr1 6579521 . G C 112 . DP=71;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,17,17,21;MQ=60;FQ=115;PV4=1,4e-33,1,1 GT:PL:GQ 0/1:142,0,255:99 chr1 6579607 . C T 66 . DP=28;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,27;MQ=60;FQ=-108 GT:PL:GQ 1/1:99,81,0:99 chr1 6585804 . C T 27 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:59,9,0:16 chr1 6586070 . C T 222 . DP=91;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,61;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 6591937 . T C 67.3 . DP=5;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:100,15,0:27 chr1 6609559 . C A 40.5 . DP=4;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:73,12,0:21 chr1 6609851 . A G 222 . DP=58;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,13,43;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 6609896 . G A 211 . DP=19;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,18;MQ=60;FQ=-84 GT:PL:GQ 1/1:244,57,0:99 chr1 6610382 . C T 24 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:56,9,0:15 chr1 6614391 . A C 42 . DP=3;VDB=0.0146;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:74,9,0:16 chr1 6614415 . A G 74.5 . DP=4;VDB=0.0254;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:107,12,0:21 chr1 6614535 . G A 125 . DP=7;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,2,5;MQ=57;FQ=-48 GT:PL:GQ 1/1:158,21,0:39 chr1 6615690 . A G 165 . DP=14;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:198,39,0:75 chr1 6615695 . C T 65 . DP=13;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:98,36,0:69 chr1 6635231 . A G 186 . DP=54;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,41,11;MQ=59;FQ=-184 GT:PL:GQ 1/1:219,157,0:99 chr1 6636461 . C T 225 . DP=48;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,7,17,6;MQ=60;FQ=225;PV4=1,0.33,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr1 6645867 . G A 20 . DP=5;VDB=0.0149;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=22.4;PV4=1,0.0025,1,0.32 GT:PL:GQ 0/1:50,0,58:52 chr1 6646959 . Gcctgccttccctgccttccctgcctt Gcctgccttccctgcctt 214 . INDEL;DP=89;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,43;MQ=32;FQ=-252 GT:PL:GQ 1/1:255,217,0:99 chr1 6659505 . G A 222 . DP=38;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,9,29;MQ=59;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 6662913 . G A 25 . DP=3;VDB=0.0220;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:57,9,0:15 chr1 6681744 . C T 111 . DP=6;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:144,18,0:33 chr1 6693097 . A G 99 . DP=11;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,7;MQ=60;FQ=-57 GT:PL:GQ 1/1:132,30,0:57 chr1 6694207 . A G 137 . DP=16;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,14;MQ=60;FQ=-75 GT:PL:GQ 1/1:170,48,0:93 chr1 6694574 . G A 189 . DP=15;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,14,1;MQ=60;FQ=-72 GT:PL:GQ 1/1:222,45,0:87 chr1 6695802 . A G 222 . DP=61;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,24,36;MQ=60;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr1 6704635 . A G 222 . DP=78;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,34,37;MQ=59;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr1 6711146 . T C 222 . DP=58;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,33,21;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr1 6761702 . C T 146 . DP=17;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:179,39,0:75 chr1 7151479 . T C 169 . DP=141;VDB=0.0400;AF1=0.5;AC1=1;DP4=30,45,39,26;MQ=60;FQ=172;PV4=0.027,1.2e-47,1,1 GT:PL:GQ 0/1:199,0,255:99 chr1 7166332 . G A 19.1 . DP=11;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,1,3,1;MQ=60;FQ=22;PV4=1,0.00023,1,1 GT:PL:GQ 0/1:49,0,80:52 chr1 7289777 . G A 87 . DP=37;VDB=0.0384;AF1=0.5;AC1=1;DP4=9,7,6,10;MQ=59;FQ=90;PV4=0.48,1.8e-13,0.16,0.44 GT:PL:GQ 0/1:117,0,255:99 chr1 7527996 . T C 55 . DP=35;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,17,0,17;MQ=60;FQ=58;PV4=1,1.2e-13,1,0.43 GT:PL:GQ 0/1:85,0,204:88 chr1 7723957 . G A 187 . DP=151;VDB=0.0380;AF1=0.5;AC1=1;DP4=42,20,55,29;MQ=60;FQ=190;PV4=0.86,9.4e-40,1,1 GT:PL:GQ 0/1:217,0,255:99 chr1 7725284 . C A 31 . DP=8;VDB=0.0287;AF1=0.5;AC1=1;DP4=0,4,3,1;MQ=60;FQ=34;PV4=0.14,0.00014,1,1 GT:PL:GQ 0/1:61,0,101:64 chr1 7737799 . A G 95 . DP=97;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,41,5,43;MQ=59;FQ=98;PV4=0.76,3.9e-34,1,1 GT:PL:GQ 0/1:125,0,255:99 chr1 7792411 . C T 28.8 . DP=3;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:60,6,0:10 chr1 7796641 . A G 35.8 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:67,6,0:10 chr1 7797734 . T A 49 . DP=19;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,15;MQ=60;FQ=-72 GT:PL:GQ 1/1:82,45,0:86 chr1 7807897 . A G 191 . DP=92;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,29,62;MQ=58;FQ=-282 GT:PL:GQ 1/1:224,255,0:99 chr1 7811014 . G A 101 . DP=27;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,23,3;MQ=59;FQ=-105 GT:PL:GQ 1/1:134,78,0:99 chr1 7811215 . A G 222 . DP=62;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,27,30;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr1 7861153 . CTTT CTTTT 165 . INDEL;DP=11;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,9,2;MQ=60;FQ=-67.5 GT:PL:GQ 1/1:206,33,0:63 chr1 7861345 . G A 38.8 . DP=2;VDB=0.0171;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:70,6,0:10 chr1 7863293 . C T 159 . DP=9;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:192,27,0:51 chr1 7869915 . G C 116 . DP=18;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,15,2;MQ=60;FQ=-78 GT:PL:GQ 1/1:149,51,0:99 chr1 7870048 . T C 222 . DP=35;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,15;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 7870144 . A C 202 . DP=35;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,24;MQ=60;FQ=-129 GT:PL:GQ 1/1:235,102,0:99 chr1 7880469 . A G 78.5 . DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:111,12,0:21 chr1 7887493 . T C 222 . DP=130;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,74,53;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 7890064 . A G 222 . DP=230;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,120,97;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 7906476 . G T 222 . DP=59;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,39,19;MQ=59;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 7906914 . T C 122 . DP=52;VDB=0.0271;AF1=1;AC1=2;DP4=1,0,2,48;MQ=59;FQ=-145;PV4=0.059,0.00037,0.43,0.17 GT:PL:GQ 1/1:155,118,0:99 chr1 7911099 . C T 102 . DP=5;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:135,15,0:27 chr1 7913430 . G A 222 . DP=68;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,44,22;MQ=59;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr1 7913590 . C T 60 . DP=26;VDB=0.0014;AF1=0.5;AC1=1;DP4=1,12,1,12;MQ=60;FQ=63;PV4=1,4.7e-12,1,1 GT:PL:GQ 0/1:90,0,189:93 chr1 7998963 . T G 222 . DP=43;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,3,38;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 8384268 . T C 222 . DP=23;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,15,7;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 8390213 . G A 69 . DP=6;VDB=0.0033;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=26;PV4=1,0.38,1,1 GT:PL:GQ 0/1:99,0,53:56 chr1 8390246 . T C 23 . DP=16;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,2,6,0;MQ=58;FQ=26;PV4=0.49,0.00034,1,0.031 GT:PL:GQ 0/1:53,0,178:56 chr1 8390495 . A G 225 . DP=30;VDB=0.0164;AF1=0.5;AC1=1;DP4=9,3,9,7;MQ=59;FQ=119;PV4=0.43,1,0.2,0.18 GT:PL:GQ 0/1:255,0,146:99 chr1 8390888 . G A 90 . DP=38;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,6,14,2;MQ=60;FQ=93;PV4=0.43,7.6e-11,1,1 GT:PL:GQ 0/1:120,0,255:99 chr1 8395441 . T C 125 . DP=70;VDB=0.0365;AF1=0.5;AC1=1;DP4=33,6,26,4;MQ=59;FQ=128;PV4=1,8.4e-16,1,1 GT:PL:GQ 0/1:155,0,255:99 chr1 8397803 . C T 129 . DP=20;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,3,7,1;MQ=60;FQ=132;PV4=0.62,1,1,1 GT:PL:GQ 0/1:159,0,222:99 chr1 8415235 . C T 201 . DP=33;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,11,2,15;MQ=60;FQ=204;PV4=0.38,1,1,1 GT:PL:GQ 0/1:231,0,240:99 chr1 8415290 . C A 26 . DP=10;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,4,0,5;MQ=60;FQ=29;PV4=1,0.00014,1,1 GT:PL:GQ 0/1:56,0,113:59 chr1 8418644 . C A 193 . DP=27;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,14,11;MQ=60;FQ=-102 GT:PL:GQ 1/1:226,75,0:99 chr1 8418650 . T C 186 . DP=26;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,11,10;MQ=60;FQ=-90 GT:PL:GQ 1/1:219,63,0:99 chr1 8421092 . C T 222 . DP=13;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,8;MQ=60;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr1 8421203 . T C 222 . DP=16;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,8,7;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr1 8422676 . T C 222 . DP=39;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,30,9;MQ=59;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 8526142 . G A 20 . DP=13;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,7,0,4;MQ=58;FQ=23;PV4=1,9.7e-05,1,1 GT:PL:GQ 0/1:50,0,169:53 chr1 8557691 . A C 16.1 . DP=13;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,8,0,5;MQ=60;FQ=19.1;PV4=1,5.4e-06,1,0.26 GT:PL:GQ 0/1:46,0,138:49 chr1 8926285 . AGGG AGGGG 113 . INDEL;DP=9;VDB=0.0118;AF1=0.5003;AC1=1;DP4=2,0,5,2;MQ=60;FQ=-5.84;PV4=1,1,1,0.23 GT:PL:GQ 0/1:151,0,30:33 chr1 8928125 . G T 97 . DP=39;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,14,3,15;MQ=60;FQ=100;PV4=0.29,7e-12,1,0.38 GT:PL:GQ 0/1:127,0,255:99 chr1 8930369 . T C 66 . DP=3;VDB=0.0220;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:98,9,0:16 chr1 8930385 . G A 115 . DP=5;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:148,15,0:27 chr1 8935149 . A G 6.02 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr1 9009406 . C T 225 . DP=66;VDB=0.0373;AF1=0.5;AC1=1;DP4=17,17,13,18;MQ=60;FQ=225;PV4=0.62,0.022,1,0.06 GT:PL:GQ 0/1:255,0,255:99 chr1 9009444 . A C 225 . DP=52;VDB=0.0298;AF1=0.5;AC1=1;DP4=14,16,5,17;MQ=60;FQ=225;PV4=0.09,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 9011537 . G A 124 . DP=104;VDB=0.0392;AF1=0.5;AC1=1;DP4=31,28,15,25;MQ=60;FQ=127;PV4=0.16,4.4e-29,1,0.44 GT:PL:GQ 0/1:154,0,255:99 chr1 9011586 . T G 134 . DP=117;VDB=0.0244;AF1=0.5;AC1=1;DP4=27,36,19,32;MQ=60;FQ=137;PV4=0.57,5.7e-42,1,1 GT:PL:GQ 0/1:164,0,255:99 chr1 9011722 . G T 131 . DP=24;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,12,1,9;MQ=60;FQ=134;PV4=1,1,1,0.3 GT:PL:GQ 0/1:161,0,205:99 chr1 9017204 . A G 177 . DP=87;VDB=0.0399;AF1=0.5;AC1=1;DP4=25,16,25,14;MQ=60;FQ=180;PV4=0.82,2.8e-19,0.35,1 GT:PL:GQ 0/1:207,0,255:99 chr1 9030964 . C T 225 . DP=56;VDB=0.0359;AF1=0.5;AC1=1;DP4=17,13,11,11;MQ=60;FQ=225;PV4=0.78,0.4,0.12,0.39 GT:PL:GQ 0/1:255,0,255:99 chr1 9034421 . G A 115 . DP=73;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,21,14,24;MQ=60;FQ=118;PV4=1,1.4e-27,1,1 GT:PL:GQ 0/1:145,0,255:99 chr1 9034598 . A G 225 . DP=72;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,14,19,12;MQ=60;FQ=225;PV4=0.81,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 9034815 . CAGAAG CAGAAGAAG 217 . INDEL;DP=54;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,16,8,15;MQ=57;FQ=217;PV4=1,1,0.0011,0.045 GT:PL:GQ 0/1:255,0,255:99 chr1 9070178 . A G 69 . DP=32;VDB=0.0384;AF1=0.5;AC1=1;DP4=5,9,5,8;MQ=60;FQ=72;PV4=1,8.6e-08,1,1 GT:PL:GQ 0/1:99,0,222:99 chr1 9084924 . T C 52 . DP=13;VDB=0.0014;AF1=0.5;AC1=1;DP4=8,0,5,0;MQ=54;FQ=55;PV4=1,0.18,0.0043,0.0035 GT:PL:GQ 0/1:82,0,141:85 chr1 9085006 . Ggcccaccttgtgcccaccttgtgcccaccttgtgc GGCCCACCTTGTgcccaccttgtgcccaccttgtgcccaccttgtgc 199 . INDEL;DP=66;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,13,10,5;MQ=53;FQ=202;PV4=0.33,1,7.1e-12,1 GT:PL:GQ 0/1:237,0,255:99 chr1 9165868 . A G 13.9 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr1 9307033 . G A 225 . DP=83;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,19,20,23;MQ=60;FQ=225;PV4=1,0.21,0.18,1 GT:PL:GQ 0/1:255,0,255:99 chr1 9307138 . T C 167 . DP=68;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,24,9,21;MQ=60;FQ=170;PV4=0.8,7.5e-16,1,1 GT:PL:GQ 0/1:197,0,255:99 chr1 9323910 . G A 159 . DP=75;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,15,26,18;MQ=59;FQ=162;PV4=0.48,1.1e-22,1,0.48 GT:PL:GQ 0/1:189,0,255:99 chr1 9416346 . C T 178 . DP=68;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,11,24,16;MQ=60;FQ=181;PV4=1,9.8e-15,1,1 GT:PL:GQ 0/1:208,0,255:99 chr1 9627521 . A G 71.5 . DP=5;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,4;MQ=54;FQ=-39 GT:PL:GQ 1/1:104,12,0:21 chr1 9642329 . C T 180 . DP=26;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,1,14,2;MQ=60;FQ=122;PV4=1,0.17,1,1 GT:PL:GQ 0/1:210,0,149:99 chr1 9658465 . T G 225 . DP=62;VDB=0.0216;AF1=0.5;AC1=1;DP4=23,7,25,7;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 9658707 . G A 26 . DP=15;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,4,0,9;MQ=60;FQ=29;PV4=1,0.00013,1,1 GT:PL:GQ 0/1:56,0,76:59 chr1 9661061 . A G 35 . DP=16;VDB=0.0014;AF1=0.5;AC1=1;DP4=8,0,7,0;MQ=60;FQ=38;PV4=1,1.9e-07,1,1 GT:PL:GQ 0/1:65,0,132:68 chr1 9670483 . T A 112 . DP=48;VDB=0.0190;AF1=0.5;AC1=1;DP4=20,5,16,6;MQ=60;FQ=115;PV4=0.73,1.8e-21,1,1 GT:PL:GQ 0/1:142,0,255:99 chr1 9670834 . C T 42 . DP=12;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,6,1,5;MQ=56;FQ=45;PV4=1,0.019,1,0.34 GT:PL:GQ 0/1:72,0,110:75 chr1 9714177 . G A 110 . DP=23;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,18,2;MQ=60;FQ=-87 GT:PL:GQ 1/1:143,60,0:99 chr1 9779871 . T C 53 . DP=8;VDB=0.0199;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=54.6;PV4=1,0.32,1,0.38 GT:PL:GQ 0/1:83,0,87:85 chr1 9784423 . C T 225 . DP=46;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,16,7,9;MQ=60;FQ=225;PV4=1,0.28,1,0.21 GT:PL:GQ 0/1:255,0,255:99 chr1 9786845 . G C 172 . DP=14;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,1,7,2;MQ=60;FQ=84;PV4=1,1,1,1 GT:PL:GQ 0/1:202,0,111:99 chr1 9793452 . T A 161 . DP=33;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,5,12,8;MQ=60;FQ=164;PV4=1,2.2e-10,1,0.22 GT:PL:GQ 0/1:191,0,225:99 chr1 9794982 . C T 36 . DP=25;VDB=0.0244;AF1=0.5;AC1=1;DP4=15,1,9,0;MQ=60;FQ=39;PV4=1,7.3e-06,1,1 GT:PL:GQ 0/1:66,0,196:69 chr1 9795719 . C T 18.1 . DP=5;VDB=0.0017;AF1=0.5008;AC1=1;DP4=0,1,0,3;MQ=60;FQ=-4.13;PV4=1,0.019,1,1 GT:PL:GQ 0/1:48,0,25:28 chr1 9797640 . G C 225 . DP=52;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,16,6,21;MQ=60;FQ=225;PV4=0.53,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 9801341 . G A 106 . DP=32;VDB=0.0393;AF1=0.5;AC1=1;DP4=4,13,5,8;MQ=60;FQ=109;PV4=0.44,7.9e-10,1,0.23 GT:PL:GQ 0/1:136,0,255:99 chr1 9804693 . C T 80 . DP=12;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,7,0,5;MQ=60;FQ=83;PV4=1,1,1,0.32 GT:PL:GQ 0/1:110,0,133:99 chr1 9811541 . A G 108 . DP=61;VDB=0.0118;AF1=0.5;AC1=1;DP4=31,4,21,3;MQ=60;FQ=111;PV4=1,3.2e-16,1,1 GT:PL:GQ 0/1:138,0,255:99 chr1 9816620 . T C 222 . DP=82;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,41,35;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr1 10001235 . TTTCGTTCGTTCGttc TTTCGTTCGttc 203 . INDEL;DP=28;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,11,0,10;MQ=60;FQ=206;PV4=0.12,0.015,1,0.37 GT:PL:GQ 0/1:241,0,255:99 chr1 10027540 . G A 13.2 . DP=4;VDB=0.0020;AF1=0.5003;AC1=1;DP4=0,1,0,3;MQ=60;FQ=4.03;PV4=1,0.0024,1,1 GT:PL:GQ 0/1:43,0,29:32 chr1 10190884 . A T 169 . DP=77;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,26,43;MQ=60;FQ=-235 GT:PL:GQ 1/1:202,208,0:99 chr1 10218377 . A G 12.3 . DP=27;VDB=0.0140;AF1=0.5;AC1=1;DP4=15,1,9,0;MQ=60;FQ=15.1;PV4=1,4e-15,1,1 GT:PL:GQ 0/1:42,0,217:44 chr1 10218439 . T C 225 . DP=70;VDB=0.0298;AF1=0.5;AC1=1;DP4=28,9,22,8;MQ=60;FQ=225;PV4=1,1,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 10238770 . A G 155 . DP=68;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,23,11,19;MQ=60;FQ=158;PV4=1,1.8e-26,1,1 GT:PL:GQ 0/1:185,0,255:99 chr1 10318652 . C G 142 . DP=67;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,21,10,18;MQ=60;FQ=145;PV4=0.61,1.8e-27,1,0.4 GT:PL:GQ 0/1:172,0,255:99 chr1 10322054 . G A 225 . DP=119;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,33,21,36;MQ=60;FQ=225;PV4=0.57,0.21,0.16,0.4 GT:PL:GQ 0/1:255,0,255:99 chr1 10322153 . A G 3.54 . DP=27;VDB=0.0053;AF1=0.4998;AC1=1;DP4=1,17,0,8;MQ=59;FQ=5.47;PV4=1,8e-14,0.068,1 GT:PL:GQ 0/1:31,0,214:30 chr1 10327407 . A T 80 . DP=9;VDB=0.0033;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=67.9;PV4=1,0.29,1,0.15 GT:PL:GQ 0/1:110,0,95:98 chr1 10328338 . C T 107 . DP=41;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,15,4,18;MQ=59;FQ=110;PV4=1,3.9e-19,0.19,1 GT:PL:GQ 0/1:137,0,242:99 chr1 10334924 . C T 100 . DP=11;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,6,4;MQ=60;FQ=-57 GT:PL:GQ 1/1:133,30,0:57 chr1 10335315 . G A 172 . DP=10;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,8,1;MQ=57;FQ=-54 GT:PL:GQ 1/1:205,27,0:51 chr1 10339209 . CATAT CAT 217 . INDEL;DP=87;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,17,19,29;MQ=59;FQ=217;PV4=0.37,1.5e-08,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 10342352 . C T 86 . DP=23;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,2;MQ=60;FQ=-63 GT:PL:GQ 1/1:119,36,0:69 chr1 10342629 . G A 212 . DP=11;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,9;MQ=58;FQ=-60 GT:PL:GQ 1/1:245,33,0:63 chr1 10355834 . C T 35 . DP=15;VDB=0.0373;AF1=0.5;AC1=1;DP4=4,4,2,5;MQ=60;FQ=38;PV4=0.61,8.9e-08,1,1 GT:PL:GQ 0/1:65,0,188:68 chr1 10356562 . C A 47 . DP=9;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,0,6,0;MQ=60;FQ=42.2;PV4=1,0.00079,1,0.45 GT:PL:GQ 0/1:77,0,70:72 chr1 10356848 . A G 72 . DP=22;VDB=0.0380;AF1=0.5;AC1=1;DP4=0,10,1,9;MQ=60;FQ=75;PV4=1,0.00023,1,0.24 GT:PL:GQ 0/1:102,0,153:99 chr1 10386506 . T C 91 . DP=33;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,14,2,14;MQ=60;FQ=94;PV4=1,1.6e-12,1,1 GT:PL:GQ 0/1:121,0,248:99 chr1 10394536 . C G 176 . DP=92;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,18,27,21;MQ=59;FQ=179;PV4=1,1.6e-29,0.18,1 GT:PL:GQ 0/1:206,0,255:99 chr1 10412636 . A T 9.52 . DP=3;VDB=0.0176;AF1=0.5001;AC1=1;DP4=1,0,1,1;MQ=60;FQ=5.62;PV4=1,0.094,1,0.33 GT:PL:GQ 0/1:39,0,32:35 chr1 10420918 . G A 125 . DP=54;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,14,15,7;MQ=60;FQ=128;PV4=0.4,2.3e-23,0.12,0.47 GT:PL:GQ 0/1:155,0,255:99 chr1 10420937 . C T 225 . DP=60;VDB=0.0398;AF1=0.5;AC1=1;DP4=17,15,16,10;MQ=60;FQ=225;PV4=0.6,0.1,0.14,0.093 GT:PL:GQ 0/1:255,0,255:99 chr1 10421878 . A G 155 . DP=88;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,28,13,22;MQ=60;FQ=158;PV4=0.66,9.7e-26,1,1 GT:PL:GQ 0/1:185,0,255:99 chr1 10425117 . ATTTTTTTT ATTTTTTT 3.35 . INDEL;DP=8;VDB=0.0140;AF1=1;AC1=2;DP4=1,0,5,1;MQ=57;FQ=-42.5;PV4=1,0.078,1,1 GT:PL:GQ 1/1:40,8,0:6 chr1 10428452 . G A 127 . DP=13;VDB=0.0006;AF1=0.5;AC1=1;DP4=3,0,10,0;MQ=60;FQ=32;PV4=1,1,1,1 GT:PL:GQ 0/1:157,0,59:62 chr1 10431132 . C T 37 . DP=23;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,0,12,0;MQ=60;FQ=40;PV4=1,1.8e-11,1,1 GT:PL:GQ 0/1:67,0,150:70 chr1 10431158 . T C 33 . DP=30;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,1,13,1;MQ=60;FQ=36;PV4=1,7.6e-14,1,1 GT:PL:GQ 0/1:63,0,202:66 chr1 10435196 . A G 63 . DP=5;VDB=0.0040;AF1=0.5;AC1=1;DP4=2,0,2,1;MQ=60;FQ=27;PV4=1,1,1,0.39 GT:PL:GQ 0/1:93,0,54:57 chr1 10435324 . C A 94 . DP=29;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,8,7,5;MQ=60;FQ=97;PV4=1,3.8e-05,1,0.2 GT:PL:GQ 0/1:124,0,255:99 chr1 10459779 . G A 155 . DP=18;VDB=0.0190;AF1=0.5001;AC1=1;DP4=0,3,1,14;MQ=59;FQ=6.99;PV4=1,0.34,1,1 GT:PL:GQ 0/1:185,0,33:36 chr1 10460485 . T C 104 . DP=14;VDB=0.0099;AF1=0.5;AC1=1;DP4=8,0,5,1;MQ=60;FQ=107;PV4=0.43,0.17,1,0.4 GT:PL:GQ 0/1:134,0,148:99 chr1 10460716 . ATTTTTTTTTTT ATTTTTTTTTTTT,ATTTTTTTTTTTTT 4.41 . INDEL;DP=16;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-64.5 GT:PL:GQ 1/1:43,30,0,38,15,35:29 chr1 10463354 . C T 37.8 . DP=2;VDB=0.0174;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:69,6,0:10 chr1 10473196 . C T 225 . DP=97;VDB=0.0322;AF1=0.5;AC1=1;DP4=31,21,32,12;MQ=60;FQ=225;PV4=0.2,0.2,1,0.41 GT:PL:GQ 0/1:255,0,255:99 chr1 10479635 . C G 188 . DP=203;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,95,91;MQ=60;FQ=-282 GT:PL:GQ 1/1:221,255,0:99 chr1 10479678 . G A 225 . DP=199;VDB=0.0399;AF1=0.5;AC1=1;DP4=34,54,50,58;MQ=60;FQ=225;PV4=0.31,0.036,0.18,0.27 GT:PL:GQ 0/1:255,0,255:99 chr1 10511589 . T C 167 . DP=23;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,3,18;MQ=59;FQ=-90 GT:PL:GQ 1/1:200,63,0:99 chr1 10529194 . T C 93 . DP=17;VDB=0.0164;AF1=0.5;AC1=1;DP4=9,1,6,0;MQ=60;FQ=96;PV4=1,1,1,1 GT:PL:GQ 0/1:123,0,177:99 chr1 10555257 . C T 222 . DP=50;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,39,11;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 10596388 . A G 172 . DP=18;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,16;MQ=60;FQ=-75 GT:PL:GQ 1/1:205,48,0:93 chr1 10678488 . A T 225 . DP=134;VDB=0.0365;AF1=0.5;AC1=1;DP4=38,38,26,32;MQ=60;FQ=225;PV4=0.6,0.33,1,0.41 GT:PL:GQ 0/1:255,0,255:99 chr1 10678610 . G A 23 . DP=21;VDB=0.0008;AF1=0.5;AC1=1;DP4=2,9,0,9;MQ=60;FQ=26;PV4=0.48,8.7e-11,1,1 GT:PL:GQ 0/1:53,0,210:56 chr1 10689942 . G T 51 . DP=33;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,14,3,8;MQ=60;FQ=54;PV4=1,6.8e-07,1,1 GT:PL:GQ 0/1:81,0,255:84 chr1 10708142 . A G 82 . DP=36;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,7,12,5;MQ=59;FQ=85;PV4=0.26,6.9e-12,1,1 GT:PL:GQ 0/1:112,0,231:99 chr1 10709267 . C T 126 . DP=35;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,4,11,2;MQ=60;FQ=129;PV4=1,0.082,1,1 GT:PL:GQ 0/1:156,0,254:99 chr1 10709309 . C G 172 . DP=60;VDB=0.0298;AF1=0.5;AC1=1;DP4=16,13,22,8;MQ=60;FQ=175;PV4=0.18,1.4e-05,1,1 GT:PL:GQ 0/1:202,0,255:99 chr1 10709441 . C T 96 . DP=35;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,10,1,22;MQ=60;FQ=99;PV4=0.27,6.4e-10,1,1 GT:PL:GQ 0/1:126,0,187:99 chr1 10710849 . GCC GCCC 217 . INDEL;DP=31;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,10,7,9;MQ=59;FQ=126;PV4=0.22,1,0.2,0.44 GT:PL:GQ 0/1:255,0,161:99 chr1 10713765 . T C 183 . DP=78;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,22,20,16;MQ=60;FQ=186;PV4=0.35,2.4e-15,1,0.4 GT:PL:GQ 0/1:213,0,255:99 chr1 10714330 . AC ACC 153 . INDEL;DP=19;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,9,2,6;MQ=60;FQ=125;PV4=0.56,1,1,0.44 GT:PL:GQ 0/1:191,0,160:99 chr1 10719645 . A G 23 . DP=5;VDB=0.0167;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=26;PV4=1,0.0057,1,1 GT:PL:GQ 0/1:53,0,86:56 chr1 10725498 . G A 225 . DP=66;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,33,7,17;MQ=59;FQ=225;PV4=0.35,1,1,0.36 GT:PL:GQ 0/1:255,0,255:99 chr1 11036050 . T C 30.5 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:63,12,0:21 chr1 11042201 . C CAG 69.5 . INDEL;DP=10;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,6,0,3;MQ=60;FQ=72.5;PV4=1,0.36,1,0.36 GT:PL:GQ 0/1:107,0,201:99 chr1 11079077 . A G 48 . DP=7;VDB=0.0116;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=51;PV4=1,1,1,1 GT:PL:GQ 0/1:78,0,99:81 chr1 11080723 . tgg tGgg 143 . INDEL;DP=15;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,4,1,10;MQ=59;FQ=26.5;PV4=1,1,0.28,0.44 GT:PL:GQ 0/1:181,0,61:64 chr1 11086097 . AT ATT 217 . INDEL;DP=71;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,32,11,15;MQ=60;FQ=217;PV4=0.29,1,0.098,1 GT:PL:GQ 0/1:255,0,255:99 chr1 11087524 . G A 168 . DP=139;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,43,33,40;MQ=60;FQ=171;PV4=0.16,2.3e-51,1,0.1 GT:PL:GQ 0/1:198,0,255:99 chr1 11087835 . T C 25 . DP=5;VDB=0.0049;AF1=0.501;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-4.76;PV4=1,0.017,1,0.26 GT:PL:GQ 0/1:55,0,24:27 chr1 11090916 . C A 98 . DP=14;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,4,4,4;MQ=60;FQ=60;PV4=0.21,0.0005,1,1 GT:PL:GQ 0/1:128,0,87:90 chr1 11105106 . C T 88 . DP=18;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,1,5,5;MQ=60;FQ=90.9;PV4=0.3,1.6e-05,1,1 GT:PL:GQ 0/1:118,0,136:99 chr1 11105122 . C T 96 . DP=17;VDB=0.0393;AF1=0.5;AC1=1;DP4=4,0,7,5;MQ=60;FQ=42;PV4=0.24,0.00028,1,0.15 GT:PL:GQ 0/1:126,0,69:72 chr1 11106666 . T C 165 . DP=61;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,17,10,28;MQ=60;FQ=168;PV4=1,3.9e-11,1,1 GT:PL:GQ 0/1:195,0,238:99 chr1 11119899 . T C 222 . DP=30;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,9,21;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 11126941 . C T 80 . DP=9;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=60;FQ=53;PV4=1,0.16,1,1 GT:PL:GQ 0/1:110,0,80:83 chr1 11128001 . A G 125 . DP=20;VDB=0.0118;AF1=0.5;AC1=1;DP4=10,1,8,1;MQ=60;FQ=128;PV4=1,0.45,1,1 GT:PL:GQ 0/1:155,0,175:99 chr1 11128654 . G A 77 . DP=45;VDB=0.0271;AF1=0.5;AC1=1;DP4=14,3,24,4;MQ=60;FQ=80;PV4=1,4.1e-24,1,1 GT:PL:GQ 0/1:107,0,223:99 chr1 11132217 . G A 144 . DP=30;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,7,9,8;MQ=60;FQ=147;PV4=1,8e-10,1,1 GT:PL:GQ 0/1:174,0,237:99 chr1 11134157 . T G 96 . DP=20;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,5,8,2;MQ=59;FQ=99;PV4=0.17,3.5e-06,1,0.25 GT:PL:GQ 0/1:126,0,186:99 chr1 11137778 . C T 29 . DP=8;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,3,0,2;MQ=60;FQ=32;PV4=1,1,1,0.4 GT:PL:GQ 0/1:59,0,85:62 chr1 11141187 . C G 97 . DP=63;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,11,18,14;MQ=60;FQ=100;PV4=0.8,2.2e-22,1,1 GT:PL:GQ 0/1:127,0,255:99 chr1 11151779 . A G 13.9 . DP=2;VDB=0.0165;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr1 11181327 . C T 225 . DP=60;VDB=0.0298;AF1=0.5;AC1=1;DP4=25,8,18,6;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 11187893 . T C 69 . DP=9;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:102,27,0:51 chr1 11190646 . G A 225 . DP=57;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,17,15,10;MQ=60;FQ=225;PV4=0.28,1,1,0.31 GT:PL:GQ 0/1:255,0,255:99 chr1 11205058 . C T 165 . DP=159;VDB=0.0365;AF1=0.5;AC1=1;DP4=50,32,32,43;MQ=60;FQ=168;PV4=0.026,8.1e-45,1,1 GT:PL:GQ 0/1:195,0,255:99 chr1 11252324 . T C 118 . DP=19;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,4,4,3;MQ=60;FQ=121;PV4=1,0.14,1,1 GT:PL:GQ 0/1:148,0,236:99 chr1 11288758 . G A 225 . DP=32;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,3,13,6;MQ=59;FQ=190;PV4=0.7,0.5,1,0.11 GT:PL:GQ 0/1:255,0,217:99 chr1 11298790 . T C 70 . DP=8;VDB=0.0017;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=70.5;PV4=1,0.41,1,1 GT:PL:GQ 0/1:100,0,101:99 chr1 11301714 . A G 225 . DP=53;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,16,11,11;MQ=60;FQ=225;PV4=1,1,1,0.14 GT:PL:GQ 0/1:255,0,255:99 chr1 11317320 . C T 22 . DP=6;VDB=0.0188;AF1=0.5;AC1=1;DP4=1,3,0,2;MQ=60;FQ=25;PV4=1,1,1,0.28 GT:PL:GQ 0/1:52,0,111:55 chr1 11561593 . G A 222 . DP=52;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,31,20;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 11575375 . T A 222 . DP=37;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,30,4;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 11579470 . G A 222 . DP=58;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,36,19;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 11593793 . TGCACACAC TGCACACACGCACGCACACAC 158 . INDEL;DP=17;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,2;MQ=34;FQ=-61.5 GT:PL:GQ 1/1:199,27,0:51 chr1 11708736 . T C 225 . DP=40;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,11,7,14;MQ=59;FQ=222;PV4=0.75,1,0.094,0.27 GT:PL:GQ 0/1:255,0,250:99 chr1 11710561 . T G 187 . DP=63;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,12,17,15;MQ=60;FQ=190;PV4=0.8,4.9e-10,1,1 GT:PL:GQ 0/1:217,0,255:99 chr1 11714368 . T G 103 . DP=11;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,10;MQ=56;FQ=-60 GT:PL:GQ 1/1:136,33,0:63 chr1 11735652 . G A 220 . DP=37;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,6,16,3;MQ=59;FQ=222;PV4=0.26,1,0.18,1 GT:PL:GQ 0/1:250,0,255:99 chr1 11735877 . A G 140 . DP=53;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,12,10,13;MQ=60;FQ=143;PV4=0.4,2.9e-17,1,1 GT:PL:GQ 0/1:170,0,255:99 chr1 11737051 . G C 67 . DP=48;VDB=0.0164;AF1=0.5;AC1=1;DP4=3,22,2,19;MQ=60;FQ=70;PV4=1,3.7e-17,1,1 GT:PL:GQ 0/1:97,0,249:99 chr1 11740358 . A G 171 . DP=59;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,6,23,9;MQ=60;FQ=174;PV4=0.77,8.4e-19,1,1 GT:PL:GQ 0/1:201,0,255:99 chr1 11772303 . A G 64 . DP=36;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,3,21,1;MQ=60;FQ=67;PV4=0.13,5.3e-12,1,1 GT:PL:GQ 0/1:94,0,209:97 chr1 11772526 . A G 153 . DP=22;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,9,1,10;MQ=60;FQ=156;PV4=1,0.36,1,0.45 GT:PL:GQ 0/1:183,0,207:99 chr1 11779762 . C T 132 . DP=31;VDB=0.0373;AF1=0.5;AC1=1;DP4=11,9,6,4;MQ=60;FQ=135;PV4=1,0.045,1,1 GT:PL:GQ 0/1:162,0,255:99 chr1 11782781 . G C 212 . DP=25;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,5,6,7;MQ=58;FQ=203;PV4=1,0.23,1,1 GT:PL:GQ 0/1:242,0,230:99 chr1 11804590 . T G 147 . DP=115;VDB=0.0365;AF1=0.5;AC1=1;DP4=32,26,30,18;MQ=60;FQ=150;PV4=0.55,4e-20,0.1,1 GT:PL:GQ 0/1:177,0,255:99 chr1 11807426 . C T 225 . DP=47;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,8,16,9;MQ=60;FQ=225;PV4=1,0.24,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 11808706 . T G 9.52 . DP=7;VDB=0.0060;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=12.3;PV4=1,0.00024,1,0.24 GT:PL:GQ 0/1:39,0,103:41 chr1 11824242 . A C 45.1 . DP=7;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:78,21,0:39 chr1 11824303 . T C 149 . DP=28;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,24,2;MQ=60;FQ=-105 GT:PL:GQ 1/1:182,78,0:99 chr1 11824346 . G A,C 176 . DP=46;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,8;MQ=58;FQ=-147 GT:PL:GQ 1/1:209,120,0,210,105,207:99 chr1 11824556 . A G 99 . DP=16;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,16;MQ=57;FQ=-75 GT:PL:GQ 1/1:132,48,0:93 chr1 11824575 . T C 47 . DP=10;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,8;MQ=54;FQ=-51 GT:PL:GQ 1/1:80,24,0:45 chr1 11824578 . C T 54 . DP=10;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,10;MQ=55;FQ=-57 GT:PL:GQ 1/1:87,30,0:57 chr1 11825851 . G C 220 . DP=26;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,0,12,5;MQ=60;FQ=97;PV4=0.13,0.21,1,0.15 GT:PL:GQ 0/1:250,0,124:99 chr1 11826630 . C T 37 . DP=13;VDB=0.0393;AF1=0.5;AC1=1;DP4=2,3,5,2;MQ=60;FQ=40;PV4=0.56,2.2e-05,1,0.48 GT:PL:GQ 0/1:67,0,119:70 chr1 11827180 . A G 183 . DP=42;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,33,6;MQ=59;FQ=-144 GT:PL:GQ 1/1:216,117,0:99 chr1 11827304 . A G 222 . DP=65;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,48;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr1 11827355 . A G 40 . DP=46;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,20,1,19;MQ=59;FQ=43;PV4=0.36,2.7e-16,0.059,1 GT:PL:GQ 0/1:70,0,252:73 chr1 11828238 . G A 48 . DP=26;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,8,3,6;MQ=60;FQ=51;PV4=0.68,6.5e-06,1,1 GT:PL:GQ 0/1:78,0,255:81 chr1 11828319 . G A 54 . DP=28;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,11,6,2;MQ=59;FQ=57;PV4=0.2,1.3e-07,1,1 GT:PL:GQ 0/1:84,0,255:87 chr1 11831615 . C T 137 . DP=32;VDB=0.0244;AF1=0.5;AC1=1;DP4=12,10,7,3;MQ=59;FQ=140;PV4=0.47,0.028,1,0.46 GT:PL:GQ 0/1:167,0,255:99 chr1 11831756 . A G 30.8 . DP=4;VDB=0.0156;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:62,6,0:10 chr1 11832100 . T A 79 . DP=25;VDB=0.0033;AF1=0.5;AC1=1;DP4=14,0,9,2;MQ=60;FQ=82;PV4=0.18,5.8e-08,1,0.34 GT:PL:GQ 0/1:109,0,173:99 chr1 11832289 . C A 67 . DP=24;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,7,1,15;MQ=59;FQ=70;PV4=1,1.2e-07,0.25,1 GT:PL:GQ 0/1:97,0,133:99 chr1 11832311 . G C 90 . DP=18;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,12,1,5;MQ=59;FQ=93;PV4=0.33,0.062,0.082,0.26 GT:PL:GQ 0/1:120,0,173:99 chr1 11836441 . T C 187 . DP=30;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,9;MQ=60;FQ=-111 GT:PL:GQ 1/1:220,84,0:99 chr1 11836442 . G A 28 . DP=30;VDB=0.0384;AF1=0.5;AC1=1;DP4=12,8,7,2;MQ=60;FQ=31;PV4=0.43,3.8e-09,1,0.17 GT:PL:GQ 0/1:58,0,255:61 chr1 11836450 . A G 169 . DP=39;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,5,16,9;MQ=60;FQ=171;PV4=1,1.6e-09,1,1 GT:PL:GQ 0/1:199,0,203:99 chr1 11836628 . T C 95 . DP=29;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,14,2,12;MQ=59;FQ=98;PV4=0.6,2e-13,0.15,0.42 GT:PL:GQ 0/1:125,0,206:99 chr1 11836682 . C T 168 . DP=16;VDB=0.0393;AF1=0.5;AC1=1;DP4=0,5,3,7;MQ=60;FQ=61;PV4=0.51,0.43,1,1 GT:PL:GQ 0/1:198,0,88:91 chr1 11838848 . G T 225 . DP=40;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,8,9,16;MQ=60;FQ=215;PV4=0.74,0.13,1,1 GT:PL:GQ 0/1:255,0,242:99 chr1 11839850 . CTTT CTT 43.5 . INDEL;DP=6;VDB=0.0325;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=6.56;PV4=1,0.26,1,1 GT:PL:GQ 0/1:81,0,40:43 chr1 11839966 . G A 45 . DP=8;VDB=0.0194;AF1=0.5;AC1=1;DP4=2,3,1,2;MQ=60;FQ=48;PV4=1,0.33,1,1 GT:PL:GQ 0/1:75,0,134:78 chr1 11839972 . G A 65 . DP=8;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,2,2,3;MQ=60;FQ=51.9;PV4=1,0.0059,1,0.12 GT:PL:GQ 0/1:95,0,79:82 chr1 11839998 . T C 54 . DP=3;VDB=0.0208;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:86,9,0:16 chr1 11842144 . C G 106 . DP=12;VDB=0.0140;AF1=0.5;AC1=1;DP4=4,2,5,1;MQ=60;FQ=109;PV4=1,0.2,1,0.021 GT:PL:GQ 0/1:136,0,157:99 chr1 11844214 . A T 57 . DP=31;VDB=0.0190;AF1=0.5;AC1=1;DP4=10,4,14,1;MQ=60;FQ=60;PV4=0.17,6.3e-12,1,0.46 GT:PL:GQ 0/1:87,0,244:90 chr1 11844330 . C T 168 . DP=47;VDB=0.0384;AF1=0.5;AC1=1;DP4=7,16,10,13;MQ=60;FQ=171;PV4=0.54,2.9e-10,1,0.047 GT:PL:GQ 0/1:198,0,255:99 chr1 11845113 . G A 22 . DP=3;VDB=0.0170;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:54,9,0:15 chr1 11845169 . T G 47 . DP=9;VDB=0.0177;AF1=0.5;AC1=1;DP4=3,1,4,1;MQ=60;FQ=50;PV4=1,0.00056,1,0.064 GT:PL:GQ 0/1:77,0,100:80 chr1 11848139 . G A 138 . DP=43;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,15,10,8;MQ=59;FQ=141;PV4=0.2,6.5e-09,0.14,0.089 GT:PL:GQ 0/1:168,0,255:99 chr1 11848879 . A G 158 . DP=11;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:191,24,0:45 chr1 11849447 . A G 138 . DP=12;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,4,6;MQ=60;FQ=-57 GT:PL:GQ 1/1:171,30,0:57 chr1 11851003 . G C 70 . DP=12;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,6,0,6;MQ=60;FQ=73;PV4=1,0.0016,1,1 GT:PL:GQ 0/1:100,0,127:99 chr1 11852300 . C T 77 . DP=58;VDB=0.0365;AF1=0.5;AC1=1;DP4=25,8,17,6;MQ=60;FQ=80;PV4=1,2.1e-29,1,0.28 GT:PL:GQ 0/1:107,0,255:99 chr1 11854457 . G A 217 . DP=78;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,38,39;MQ=60;FQ=-259 GT:PL:GQ 1/1:250,232,0:99 chr1 11854755 . G A 225 . DP=45;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,15,10,8;MQ=60;FQ=225;PV4=0.55,0.25,1,0.36 GT:PL:GQ 0/1:255,0,255:99 chr1 11860458 . C T 39 . DP=25;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,12,1,11;MQ=59;FQ=42;PV4=1,5.2e-15,1,1 GT:PL:GQ 0/1:69,0,196:72 chr1 11879685 . C T 92 . DP=50;VDB=0.0164;AF1=0.5;AC1=1;DP4=5,18,4,22;MQ=60;FQ=95;PV4=0.72,1.7e-17,1,1 GT:PL:GQ 0/1:122,0,255:99 chr1 11884555 . A G 195 . DP=40;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,15,23;MQ=59;FQ=-141 GT:PL:GQ 1/1:228,114,0:99 chr1 11888073 . C T 131 . DP=33;VDB=0.0099;AF1=0.5;AC1=1;DP4=16,2,15,0;MQ=60;FQ=134;PV4=0.49,0.068,1,1 GT:PL:GQ 0/1:161,0,240:99 chr1 11888384 . A G 71 . DP=27;VDB=0.0359;AF1=0.5;AC1=1;DP4=6,6,3,9;MQ=60;FQ=74;PV4=0.4,1.2e-10,1,0.33 GT:PL:GQ 0/1:101,0,250:99 chr1 11889468 . A G 102 . DP=13;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,5,0,7;MQ=60;FQ=102;PV4=0.46,1,1,1 GT:PL:GQ 0/1:132,0,133:99 chr1 11896141 . A G 86 . DP=48;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,17,7,7;MQ=60;FQ=89;PV4=1,9.3e-10,1,0.42 GT:PL:GQ 0/1:116,0,255:99 chr1 11897592 . A G 134 . DP=30;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,9,4,16;MQ=60;FQ=119;PV4=0.64,4.9e-09,1,0.48 GT:PL:GQ 0/1:164,0,146:99 chr1 11899033 . G T 131 . DP=96;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,37,9,34;MQ=60;FQ=134;PV4=0.63,5e-33,1,0.28 GT:PL:GQ 0/1:161,0,255:99 chr1 11900035 . G A 10.2 . DP=2;VDB=0.0159;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:41,6,0:8 chr1 11971345 . T C 23 . DP=9;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,3,0,6;MQ=60;FQ=26;PV4=1,2.9e-07,1,0.45 GT:PL:GQ 0/1:53,0,74:56 chr1 11982544 . T C 192 . DP=13;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,2;MQ=60;FQ=-66 GT:PL:GQ 1/1:225,39,0:75 chr1 11982609 . C G 28 . DP=32;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,5,11,1;MQ=59;FQ=31;PV4=0.36,4.1e-17,1,0.41 GT:PL:GQ 0/1:58,0,255:61 chr1 11983206 . A G 58 . DP=26;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,9,5,5;MQ=51;FQ=61;PV4=1,4.7e-09,0.00039,1 GT:PL:GQ 0/1:88,0,255:91 chr1 12009955 . C T 113 . DP=43;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,12,6,14;MQ=60;FQ=116;PV4=0.35,2.5e-12,1,0.067 GT:PL:GQ 0/1:143,0,255:99 chr1 12024235 . C T 225 . DP=68;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,29,11,14;MQ=60;FQ=225;PV4=0.3,0.2,0.099,0.25 GT:PL:GQ 0/1:255,0,255:99 chr1 12027204 . C T 36 . DP=10;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,5,1,4;MQ=60;FQ=39;PV4=1,1.3e-05,1,1 GT:PL:GQ 0/1:66,0,114:69 chr1 12062205 . A G 96 . DP=48;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,21,3,16;MQ=59;FQ=99;PV4=0.72,1.5e-15,1,1 GT:PL:GQ 0/1:126,0,255:99 chr1 12071680 . A G 71 . DP=8;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=48;PV4=1,1,1,1 GT:PL:GQ 0/1:101,0,75:78 chr1 12082926 . A G 68 . DP=48;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,18,0,26;MQ=60;FQ=71;PV4=0.082,1.9e-20,1,1 GT:PL:GQ 0/1:98,0,246:99 chr1 12164437 . C T 200 . DP=45;VDB=0.0190;AF1=0.5;AC1=1;DP4=16,7,20,2;MQ=59;FQ=203;PV4=0.13,1,1,0.2 GT:PL:GQ 0/1:230,0,255:99 chr1 12175729 . C T 208 . DP=101;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,52,47;MQ=60;FQ=-282 GT:PL:GQ 1/1:241,255,0:99 chr1 12175818 . A G 114 . DP=56;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,18,7,26;MQ=60;FQ=117;PV4=0.72,1.1e-20,1,1 GT:PL:GQ 0/1:144,0,230:99 chr1 12198297 . T C 159 . DP=17;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,0,9,2;MQ=60;FQ=68;PV4=0.51,1,1,0.29 GT:PL:GQ 0/1:189,0,95:98 chr1 12248942 . A G 69 . DP=58;VDB=0.0384;AF1=0.5;AC1=1;DP4=15,24,3,15;MQ=59;FQ=72;PV4=0.13,2.2e-10,0.017,1 GT:PL:GQ 0/1:99,0,255:99 chr1 12248965 . A G 146 . DP=33;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,13,1,12;MQ=59;FQ=149;PV4=0.11,1,0.037,1 GT:PL:GQ 0/1:176,0,255:99 chr1 12249020 . C T 44 . DP=7;VDB=0.0060;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=57;FQ=47;PV4=1,1,0.14,1 GT:PL:GQ 0/1:74,0,99:77 chr1 12249031 . A G 7.8 . DP=5;VDB=0.0060;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=55;FQ=10.3;PV4=1,0.014,0.25,1 GT:PL:GQ 0/1:37,0,53:38 chr1 12251191 . T A 6.2 . DP=4;VDB=0.0192;AF1=0.4999;AC1=1;DP4=0,2,0,2;MQ=54;FQ=8.6;PV4=1,0.012,0.21,1 GT:PL:GQ 0/1:35,0,54:36 chr1 12251765 . T G 104 . DP=16;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,0,10,2;MQ=60;FQ=46;PV4=1,4.3e-05,1,0.28 GT:PL:GQ 0/1:134,0,73:76 chr1 12251808 . T G 115 . DP=18;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,2,6,5;MQ=60;FQ=98;PV4=0.64,0.024,1,0.42 GT:PL:GQ 0/1:145,0,125:99 chr1 12252333 . ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt ctgtgtgtgtgtgtgtgtgtgtgtgtgt,cTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 19.5 . INDEL;DP=2;VDB=0.0157;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-37.5 GT:PL:GQ 1/1:104,50,47,57,0,54:6 chr1 12252892 . C T 24 . DP=10;VDB=0.0053;AF1=0.5;AC1=1;DP4=4,1,5,0;MQ=60;FQ=27;PV4=1,0.00034,1,1 GT:PL:GQ 0/1:54,0,127:57 chr1 12252955 . T G 100 . DP=56;VDB=0.0345;AF1=0.5;AC1=1;DP4=25,7,17,5;MQ=59;FQ=103;PV4=1,1.8e-21,0.4,0.11 GT:PL:GQ 0/1:130,0,255:99 chr1 12253351 . T C 62 . DP=12;VDB=0.0216;AF1=0.5001;AC1=1;DP4=0,2,0,9;MQ=60;FQ=8.65;PV4=1,0.0042,1,0.29 GT:PL:GQ 0/1:92,0,35:38 chr1 12261972 . A G 20 . DP=18;VDB=0.0325;AF1=0.5;AC1=1;DP4=10,0,6,1;MQ=60;FQ=23;PV4=0.41,1.6e-11,1,0.033 GT:PL:GQ 0/1:50,0,164:53 chr1 12304694 . A G 129 . DP=28;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,14,1,9;MQ=60;FQ=132;PV4=0.63,1,1,1 GT:PL:GQ 0/1:159,0,255:99 chr1 12339619 . A T 163 . DP=59;VDB=0.0398;AF1=0.5;AC1=1;DP4=16,14,12,15;MQ=60;FQ=166;PV4=0.6,7.8e-14,1,0.022 GT:PL:GQ 0/1:193,0,255:99 chr1 12401868 . A C 192 . DP=33;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,9;MQ=59;FQ=-126 GT:PL:GQ 1/1:225,99,0:99 chr1 12418700 . T C 180 . DP=29;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,6,23;MQ=60;FQ=-114 GT:PL:GQ 1/1:213,87,0:99 chr1 12567232 . A G 222 . DP=40;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,23,16;MQ=57;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 12638964 . T C 222 . DP=33;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,3,28;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 12639018 . C T 29 . DP=16;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,9,0,7;MQ=60;FQ=32;PV4=1,3.2e-07,1,1 GT:PL:GQ 0/1:59,0,148:62 chr1 12639168 . A G 176 . DP=29;VDB=0.0244;AF1=1;AC1=2;DP4=0,1,26,1;MQ=58;FQ=-71;PV4=0.071,0.16,0.39,1 GT:PL:GQ 1/1:209,44,0:85 chr1 12639289 . C T 111 . DP=79;VDB=0.0365;AF1=0.5;AC1=1;DP4=33,18,13,14;MQ=59;FQ=114;PV4=0.23,8.3e-21,0.32,1 GT:PL:GQ 0/1:141,0,255:99 chr1 12640461 . C G 51 . DP=34;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,7,13,0;MQ=60;FQ=54;PV4=0.027,3e-13,1,1 GT:PL:GQ 0/1:81,0,255:84 chr1 12776344 . A T 222 . DP=33;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,14;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 12779560 . T C 192 . DP=68;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,25,38;MQ=60;FQ=-217 GT:PL:GQ 1/1:225,190,0:99 chr1 12779618 . T C 197 . DP=50;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,11,39;MQ=60;FQ=-178 GT:PL:GQ 1/1:230,151,0:99 chr1 12785093 . T G 61 . DP=10;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:94,30,0:57 chr1 12785494 . G T 166 . DP=135;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,31,51;MQ=60;FQ=-274 GT:PL:GQ 1/1:199,247,0:99 chr1 12786070 . A G 12 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr1 12820870 . T C 170 . DP=29;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,8,21;MQ=59;FQ=-114 GT:PL:GQ 1/1:203,87,0:99 chr1 12835868 . T C 222 . DP=50;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,33;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 12837634 . T A 178 . DP=27;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,10,17;MQ=58;FQ=-108 GT:PL:GQ 1/1:211,81,0:99 chr1 12837679 . C T 77 . DP=24;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,6,4,9;MQ=58;FQ=80;PV4=0.68,1.4e-14,1,0.015 GT:PL:GQ 0/1:107,0,229:99 chr1 12854530 . C G 222 . DP=99;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,46,51;MQ=57;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 12888601 . GCCC GCCCC 182 . INDEL;DP=14;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,11;MQ=48;FQ=-73.5 GT:PL:GQ 1/1:223,39,0:75 chr1 12907798 . A C 8.64 . DP=78;VDB=0.0399;AF1=0.5;AC1=1;DP4=32,26,18,2;MQ=50;FQ=11.3;PV4=0.0062,3e-23,2.9e-18,0.45 GT:PL:GQ 0/1:38,0,255:40 chr1 12907802 . C T 8.64 . DP=77;VDB=0.0380;AF1=0.5;AC1=1;DP4=30,28,17,2;MQ=51;FQ=11.3;PV4=0.0031,1.2e-21,2e-17,1 GT:PL:GQ 0/1:38,0,255:40 chr1 12907803 . C T 10.4 . DP=78;VDB=0.0399;AF1=0.5;AC1=1;DP4=30,27,17,2;MQ=51;FQ=13.2;PV4=0.0055,1.5e-26,3.8e-17,1 GT:PL:GQ 0/1:40,0,255:42 chr1 12907837 . C T 87 . DP=92;VDB=0.0244;AF1=0.5;AC1=1;DP4=33,27,19,8;MQ=51;FQ=90;PV4=0.24,3.3e-20,7.9e-09,0.38 GT:PL:GQ 0/1:117,0,255:99 chr1 12907885 . T C 183 . DP=104;VDB=0.0398;AF1=0.5;AC1=1;DP4=28,21,23,29;MQ=50;FQ=186;PV4=0.23,2.1e-37,1,0.021 GT:PL:GQ 0/1:213,0,255:99 chr1 13183439 . T C 225 . DP=80;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,4,35,24;MQ=53;FQ=118;PV4=0.26,1,0.093,0.15 GT:PL:GQ 0/1:255,0,145:99 chr1 13183511 . T C 120 . DP=86;VDB=0.0365;AF1=0.5;AC1=1;DP4=32,16,11,25;MQ=52;FQ=123;PV4=0.0018,1.9e-18,6.4e-11,1 GT:PL:GQ 0/1:150,0,255:99 chr1 13183528 . A C 88 . DP=82;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,20,8,23;MQ=51;FQ=91;PV4=0.0057,7.9e-28,1.4e-13,1 GT:PL:GQ 0/1:118,0,255:99 chr1 13183532 . C T 76 . DP=82;VDB=0.0380;AF1=0.5;AC1=1;DP4=30,19,7,23;MQ=51;FQ=79;PV4=0.0012,2.2e-30,2e-14,0.45 GT:PL:GQ 0/1:106,0,255:99 chr1 13183533 . C T 78 . DP=80;VDB=0.0365;AF1=0.5;AC1=1;DP4=29,19,7,23;MQ=51;FQ=81;PV4=0.0022,3.4e-29,3.7e-14,0.3 GT:PL:GQ 0/1:108,0,255:99 chr1 13695974 . T C 43.1 . DP=7;VDB=0.0263;AF1=1;AC1=2;DP4=0,0,2,4;MQ=16;FQ=-45 GT:PL:GQ 1/1:76,18,0:33 chr1 13696022 . A G 26 . DP=8;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,8;MQ=14;FQ=-51 GT:PL:GQ 1/1:59,24,0:43 chr1 13696029 . A G 26 . DP=8;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,8;MQ=14;FQ=-51 GT:PL:GQ 1/1:59,24,0:43 chr1 13696047 . A T 19.2 . DP=6;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,6;MQ=14;FQ=-45 GT:PL:GQ 1/1:52,18,0:31 chr1 13696054 . G A 10.9 . DP=4;VDB=0.0218;AF1=1;AC1=2;DP4=0,0,0,4;MQ=15;FQ=-39 GT:PL:GQ 1/1:43,12,0:17 chr1 13696090 . T C 11.3 . DP=3;VDB=0.0222;AF1=1;AC1=2;DP4=0,0,0,3;MQ=18;FQ=-36 GT:PL:GQ 1/1:43,9,0:13 chr1 13802325 . T C 102 . DP=10;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:135,30,0:57 chr1 13802437 . G A 96 . DP=29;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,7,9,4;MQ=60;FQ=99;PV4=0.46,3.7e-14,1,1 GT:PL:GQ 0/1:126,0,255:99 chr1 13839382 . C G 22 . DP=7;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=22;PV4=1,0.0038,1,1 GT:PL:GQ 0/1:52,0,52:52 chr1 13910417 . C T 108 . DP=69;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,8,23,19;MQ=59;FQ=111;PV4=0.6,1.2e-23,1,0.12 GT:PL:GQ 0/1:138,0,250:99 chr1 13933855 . A G 114 . DP=40;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,35;MQ=59;FQ=-144 GT:PL:GQ 1/1:147,117,0:99 chr1 13936822 . G T 136 . DP=24;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,17,2;MQ=59;FQ=-84 GT:PL:GQ 1/1:169,57,0:99 chr1 13937089 . G T 222 . DP=17;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,2,12;MQ=60;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr1 13940864 . C G 222 . DP=70;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,41,28;MQ=60;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr1 14143003 . A G 222 . DP=77;VDB=0.0400;AF1=1;AC1=2;DP4=1,0,39,35;MQ=60;FQ=-221;PV4=1,0.013,1,0.2 GT:PL:GQ 1/1:255,194,0:99 chr1 14149505 . C A 34 . DP=8;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:67,24,0:45 chr1 14149601 . C T 218 . DP=47;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,29,18;MQ=60;FQ=-168 GT:PL:GQ 1/1:251,141,0:99 chr1 14149622 . T C 222 . DP=57;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,32,24;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 14220186 . A G 35 . DP=22;VDB=0.0216;AF1=0.5;AC1=1;DP4=13,1,7,0;MQ=60;FQ=38;PV4=1,6.5e-07,1,1 GT:PL:GQ 0/1:65,0,197:68 chr1 15390200 . A G 225 . DP=78;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,33,6,28;MQ=59;FQ=225;PV4=0.59,1,0.43,0.019 GT:PL:GQ 0/1:255,0,255:99 chr1 15427934 . C T 24 . DP=9;VDB=0.0008;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=27;PV4=1,0.00013,1,0.22 GT:PL:GQ 0/1:54,0,96:57 chr1 15428358 . T C 46 . DP=3;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:78,9,0:16 chr1 15438990 . G A 113 . DP=28;VDB=0.0359;AF1=0.5;AC1=1;DP4=8,6,8,5;MQ=56;FQ=116;PV4=1,3.1e-05,1,0.31 GT:PL:GQ 0/1:143,0,225:99 chr1 15439088 . CTTTTTTT CTTTTTTTT 3.81 . INDEL;DP=20;VDB=0.0118;AF1=0.5001;AC1=1;DP4=1,5,1,6;MQ=56;FQ=-4.98;PV4=1,1,0.091,0.17 GT:PL:GQ 0/1:39,0,32:35 chr1 15490865 . T A 144 . DP=86;VDB=0.0365;AF1=0.5;AC1=1;DP4=28,12,34,10;MQ=60;FQ=147;PV4=0.47,2.6e-21,1,0.29 GT:PL:GQ 0/1:174,0,255:99 chr1 15497727 . T C 222 . DP=34;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,19,15;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 15497844 . T A 189 . DP=16;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,11;MQ=59;FQ=-75 GT:PL:GQ 1/1:222,48,0:93 chr1 15541537 . C T 222 . DP=19;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,13,4;MQ=60;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr1 15541607 . T C 177 . DP=36;VDB=0.0298;AF1=0.5;AC1=1;DP4=14,7,11,3;MQ=59;FQ=180;PV4=0.7,0.051,0.39,0.42 GT:PL:GQ 0/1:207,0,255:99 chr1 15546077 . G A 225 . DP=118;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,38,13,47;MQ=60;FQ=225;PV4=0.21,0.17,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 15671483 . G A 4.77 . DP=10;VDB=0.0301;AF1=0.4999;AC1=1;DP4=6,0,3,0;MQ=60;FQ=6.99;PV4=1,1e-05,1,1 GT:PL:GQ 0/1:33,0,130:33 chr1 15702297 . T G 83 . DP=30;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,13,3,11;MQ=58;FQ=86;PV4=0.65,1.5e-08,1,1 GT:PL:GQ 0/1:113,0,224:99 chr1 15708540 . A G 225 . DP=33;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,9,7,8;MQ=60;FQ=225;PV4=1,0.13,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 15709555 . A G 118 . DP=35;VDB=0.0140;AF1=0.5;AC1=1;DP4=14,5,10,6;MQ=60;FQ=121;PV4=0.72,1.3e-06,1,1 GT:PL:GQ 0/1:148,0,255:99 chr1 15709669 . C T 83 . DP=28;VDB=0.0359;AF1=0.5;AC1=1;DP4=2,10,2,11;MQ=59;FQ=86;PV4=1,3e-07,1,0.44 GT:PL:GQ 0/1:113,0,187:99 chr1 15710411 . G C 117 . DP=32;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,17,1,9;MQ=59;FQ=120;PV4=1,0.44,1,1 GT:PL:GQ 0/1:147,0,255:99 chr1 15714831 . cc cCATTc 29.5 . INDEL;DP=8;VDB=0.0011;AF1=0.5;AC1=1;DP4=4,0,2,0;MQ=52;FQ=32.3;PV4=1,1,0.32,1 GT:PL:GQ 0/1:67,0,80:70 chr1 15714842 . G C 27 . DP=17;VDB=0.0042;AF1=0.5;AC1=1;DP4=8,0,6,1;MQ=54;FQ=30;PV4=0.47,7.9e-07,0.11,1 GT:PL:GQ 0/1:57,0,134:60 chr1 15723843 . G A 118 . DP=42;VDB=0.0271;AF1=0.5;AC1=1;DP4=20,3,13,6;MQ=59;FQ=121;PV4=0.26,2e-14,0.14,0.4 GT:PL:GQ 0/1:148,0,255:99 chr1 15724003 . A G 74 . DP=39;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,16,4,15;MQ=59;FQ=77;PV4=0.66,6.2e-21,1,1 GT:PL:GQ 0/1:104,0,234:99 chr1 15724033 . A G 177 . DP=22;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,22;MQ=58;FQ=-93 GT:PL:GQ 1/1:210,66,0:99 chr1 15754484 . T C 128 . DP=15;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,12,3;MQ=60;FQ=-72 GT:PL:GQ 1/1:161,45,0:87 chr1 15755248 . C T 17.8 . DP=2;VDB=0.0173;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:49,6,0:10 chr1 15769876 . GCC GCCC 214 . INDEL;DP=26;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,23,3;MQ=59;FQ=-113 GT:PL:GQ 1/1:255,78,0:99 chr1 15770101 . C A 157 . DP=100;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,39,15,28;MQ=60;FQ=160;PV4=0.67,5.3e-27,1,0.43 GT:PL:GQ 0/1:187,0,255:99 chr1 15772057 . G T 3.01 . DP=7;VDB=0.0017;AF1=0.4998;AC1=1;DP4=3,0,3,0;MQ=60;FQ=4.74;PV4=1,0.15,1,1 GT:PL:GQ 0/1:30,0,49:28 chr1 15783117 . CA CAA 214 . INDEL;DP=108;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,49,43;MQ=43;FQ=-290 GT:PL:GQ 1/1:255,255,0:99 chr1 15783553 . TG TGG 217 . INDEL;DP=79;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,17,29,17;MQ=60;FQ=217;PV4=0.1,1,0.21,0.15 GT:PL:GQ 0/1:255,0,255:99 chr1 15788269 . A C 144 . DP=29;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,8,7,11;MQ=59;FQ=147;PV4=0.69,8.7e-13,1,1 GT:PL:GQ 0/1:174,0,193:99 chr1 15788491 . C T 65 . DP=16;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,1,7,1;MQ=60;FQ=68;PV4=1,1.5e-06,1,1 GT:PL:GQ 0/1:95,0,126:98 chr1 15788630 . G A 46 . DP=5;VDB=0.0070;AF1=0.5004;AC1=1;DP4=0,1,0,3;MQ=60;FQ=3.55;PV4=1,0.1,1,0.24 GT:PL:GQ 0/1:76,0,28:31 chr1 15789176 . C T 15.1 . DP=32;VDB=0.0066;AF1=0.5;AC1=1;DP4=17,3,11,0;MQ=60;FQ=18.1;PV4=0.54,6.5e-17,1,1 GT:PL:GQ 0/1:45,0,255:48 chr1 15789297 . A C 159 . DP=103;VDB=0.0190;AF1=0.5;AC1=1;DP4=25,34,25,16;MQ=60;FQ=162;PV4=0.1,1e-21,1,1 GT:PL:GQ 0/1:189,0,255:99 chr1 15793913 . G A 225 . DP=117;VDB=0.0365;AF1=0.5;AC1=1;DP4=27,29,35,22;MQ=60;FQ=225;PV4=0.19,0.018,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 15812432 . A G 216 . DP=36;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,8;MQ=59;FQ=-132 GT:PL:GQ 1/1:249,105,0:99 chr1 15812665 . G T 17.1 . DP=7;VDB=0.0053;AF1=0.502;AC1=1;DP4=0,1,0,5;MQ=56;FQ=-6.97;PV4=1,0.00022,0.35,0.12 GT:PL:GQ 0/1:47,0,21:24 chr1 15813751 . C T 178 . DP=51;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,38,10;MQ=60;FQ=-171 GT:PL:GQ 1/1:211,144,0:99 chr1 15813969 . A C 27 . DP=7;VDB=0.0003;AF1=0.5032;AC1=1;DP4=0,1,0,6;MQ=60;FQ=-8.63;PV4=1,8.1e-05,1,0.36 GT:PL:GQ 0/1:57,0,19:22 chr1 15820576 . T A 69 . DP=5;VDB=0.0008;AF1=0.5008;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-4.12;PV4=1,0.31,1,0.1 GT:PL:GQ 0/1:99,0,25:28 chr1 15822043 . T C 45 . DP=8;VDB=0.0049;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=57;FQ=47.9;PV4=1,1,1,1 GT:PL:GQ 0/1:75,0,93:78 chr1 15832383 . G T 81 . DP=9;VDB=0.0003;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=70.8;PV4=1,0.22,1,0.37 GT:PL:GQ 0/1:111,0,98:99 chr1 15832476 . G A 181 . DP=80;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,11,27,15;MQ=60;FQ=184;PV4=1,4e-23,0.19,1 GT:PL:GQ 0/1:211,0,255:99 chr1 15832543 . T C 177 . DP=81;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,21,19,25;MQ=60;FQ=180;PV4=0.82,9.4e-28,0.19,1 GT:PL:GQ 0/1:207,0,255:99 chr1 15834360 . A G 97 . DP=25;VDB=0.0244;AF1=0.5;AC1=1;DP4=8,2,10,5;MQ=60;FQ=100;PV4=0.66,6.4e-13,1,0.33 GT:PL:GQ 0/1:127,0,189:99 chr1 15834491 . G A 150 . DP=30;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,10,6,12;MQ=60;FQ=141;PV4=0.2,1.1e-11,1,1 GT:PL:GQ 0/1:180,0,168:99 chr1 15844615 . A G 41 . DP=16;VDB=0.0081;AF1=0.5;AC1=1;DP4=7,0,9,0;MQ=60;FQ=44;PV4=1,2.1e-07,1,0.17 GT:PL:GQ 0/1:71,0,132:74 chr1 15844926 . C T 167 . DP=27;VDB=0.0118;AF1=0.5;AC1=1;DP4=5,12,4,6;MQ=59;FQ=170;PV4=0.68,1,0.099,1 GT:PL:GQ 0/1:197,0,255:99 chr1 15860803 . C T 162 . DP=111;VDB=0.0392;AF1=0.5;AC1=1;DP4=29,25,25,30;MQ=59;FQ=165;PV4=0.45,1.7e-41,0.042,1 GT:PL:GQ 0/1:192,0,255:99 chr1 15892415 . A C 225 . DP=66;VDB=0.0399;AF1=0.5;AC1=1;DP4=25,8,19,10;MQ=60;FQ=225;PV4=0.41,1,1,0.5 GT:PL:GQ 0/1:255,0,255:99 chr1 15904318 . C T 225 . DP=45;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,11,9,13;MQ=60;FQ=225;PV4=0.76,0.39,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 15905501 . G A 163 . DP=71;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,21,6,31;MQ=60;FQ=166;PV4=0.75,1.1e-20,1,1 GT:PL:GQ 0/1:193,0,255:99 chr1 15909624 . TGAGTACAGGA TGA 42.5 . INDEL;DP=20;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,1,7,0;MQ=51;FQ=45.5;PV4=1,8.2e-07,0,1 GT:PL:GQ 0/1:80,0,255:83 chr1 15909744 . C T 49 . DP=33;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,11,4,7;MQ=56;FQ=52;PV4=0.71,7.5e-15,1.7e-05,0.47 GT:PL:GQ 0/1:79,0,255:82 chr1 15909850 . C G 97 . DP=35;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,12,6,8;MQ=59;FQ=100;PV4=1,7.5e-09,0.4,1 GT:PL:GQ 0/1:127,0,255:99 chr1 15909895 . A G 38 . DP=20;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,9,1,6;MQ=59;FQ=41;PV4=0.61,4.1e-09,1,1 GT:PL:GQ 0/1:68,0,250:71 chr1 15911131 . G A 158 . DP=29;VDB=0.0373;AF1=0.5;AC1=1;DP4=13,3,9,2;MQ=60;FQ=161;PV4=1,0.48,1,0.38 GT:PL:GQ 0/1:188,0,242:99 chr1 15911493 . A G 19.8 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:51,6,0:10 chr1 15944384 . G A 116 . DP=49;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,21,6,12;MQ=60;FQ=119;PV4=1,1.9e-15,1,0.0039 GT:PL:GQ 0/1:146,0,255:99 chr1 15956769 . G T 159 . DP=58;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,9,26,10;MQ=59;FQ=162;PV4=0.39,1.3e-22,0.13,1 GT:PL:GQ 0/1:189,0,255:99 chr1 15959886 . C G 73 . DP=13;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,0,6,2;MQ=60;FQ=73.9;PV4=0.49,1.6e-07,1,0.38 GT:PL:GQ 0/1:103,0,105:99 chr1 15959977 . C T 139 . DP=45;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,7,14,9;MQ=60;FQ=142;PV4=1,4.8e-13,1,1 GT:PL:GQ 0/1:169,0,255:99 chr1 15986547 . T C 109 . DP=59;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,26,8,13;MQ=59;FQ=112;PV4=0.57,2.2e-14,1,0.049 GT:PL:GQ 0/1:139,0,255:99 chr1 15987602 . A G 103 . DP=90;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,23,28,19;MQ=60;FQ=106;PV4=0.21,7.8e-40,1,0.2 GT:PL:GQ 0/1:133,0,255:99 chr1 16042724 . TC T 5.79 . INDEL;DP=23;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,8,3,1;MQ=60;FQ=8.19;PV4=0.6,0.0011,1,0.47 GT:PL:GQ 0/1:42,0,255:43 chr1 16042766 . T C 22 . DP=24;VDB=0.0099;AF1=0.5;AC1=1;DP4=5,12,3,4;MQ=60;FQ=25;PV4=0.65,9.3e-09,1,1 GT:PL:GQ 0/1:52,0,255:55 chr1 16043157 . G A 76 . DP=20;VDB=0.0393;AF1=0.5;AC1=1;DP4=8,2,6,3;MQ=60;FQ=79;PV4=0.63,1.2e-06,1,1 GT:PL:GQ 0/1:106,0,190:99 chr1 16044401 . G A 210 . DP=40;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,3,13,5;MQ=59;FQ=213;PV4=0.44,0.0079,1,0.39 GT:PL:GQ 0/1:240,0,255:99 chr1 16044929 . A G 27 . DP=20;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,3,7,1;MQ=60;FQ=30;PV4=0.59,9.2e-08,1,0.35 GT:PL:GQ 0/1:57,0,209:60 chr1 16044945 . G A 50 . DP=23;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,4,7,2;MQ=59;FQ=53;PV4=1,2.8e-10,1,1 GT:PL:GQ 0/1:80,0,250:83 chr1 16048005 . A G 41 . DP=11;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,6,1,4;MQ=60;FQ=44;PV4=0.45,2.8e-05,1,0.22 GT:PL:GQ 0/1:71,0,130:74 chr1 16053493 . G A 124 . DP=14;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,1,6,1;MQ=58;FQ=112;PV4=1,1,1,1 GT:PL:GQ 0/1:154,0,139:99 chr1 16055732 . C T 118 . DP=20;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,4,4,9;MQ=60;FQ=82;PV4=1,0.00012,1,1 GT:PL:GQ 0/1:148,0,109:99 chr1 16056364 . G A 109 . DP=22;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,6,5,6;MQ=59;FQ=112;PV4=0.67,6.2e-08,0.19,1 GT:PL:GQ 0/1:139,0,203:99 chr1 16058698 . CA C 31.5 . INDEL;DP=6;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=29;PV4=1,1,1,1 GT:PL:GQ 0/1:69,0,65:67 chr1 16064411 . T C 73 . DP=34;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,5,11,3;MQ=60;FQ=76;PV4=1,4.5e-14,1,0.2 GT:PL:GQ 0/1:103,0,255:99 chr1 16069644 . C T 109 . DP=22;VDB=0.0373;AF1=0.5;AC1=1;DP4=3,8,4,6;MQ=60;FQ=112;PV4=0.66,1.7e-07,1,1 GT:PL:GQ 0/1:139,0,215:99 chr1 16096934 . C T 80 . DP=18;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,8,3;MQ=60;FQ=-60 GT:PL:GQ 1/1:113,33,0:63 chr1 16097237 . G A 12 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr1 16256007 . T C 150 . DP=69;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,15,27,9;MQ=59;FQ=153;PV4=0.077,1.3e-29,0.091,0.13 GT:PL:GQ 0/1:180,0,255:99 chr1 16259813 . A G 185 . DP=66;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,10,22,16;MQ=59;FQ=188;PV4=0.8,7.9e-18,0.12,1 GT:PL:GQ 0/1:215,0,255:99 chr1 16265422 . A G 129 . DP=71;VDB=0.0216;AF1=0.5;AC1=1;DP4=10,21,4,36;MQ=60;FQ=132;PV4=0.033,9.3e-10,1,0.35 GT:PL:GQ 0/1:159,0,255:99 chr1 16271260 . G A 71 . DP=28;VDB=0.0384;AF1=0.5;AC1=1;DP4=12,4,7,4;MQ=59;FQ=74;PV4=0.68,1e-08,1,0.49 GT:PL:GQ 0/1:101,0,240:99 chr1 16272250 . A G 142 . DP=50;VDB=0.0140;AF1=0.5;AC1=1;DP4=19,9,13,9;MQ=60;FQ=145;PV4=0.56,4.5e-19,1,1 GT:PL:GQ 0/1:172,0,255:99 chr1 16272409 . C T 225 . DP=96;VDB=0.0400;AF1=0.5;AC1=1;DP4=30,12,33,17;MQ=59;FQ=225;PV4=0.66,0.005,0.33,0.24 GT:PL:GQ 0/1:255,0,255:99 chr1 16330816 . C T 107 . DP=40;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,9,7,14;MQ=60;FQ=110;PV4=0.73,1.3e-12,1,1 GT:PL:GQ 0/1:137,0,252:99 chr1 16330901 . C T 40 . DP=11;VDB=0.0033;AF1=0.5;AC1=1;DP4=2,1,1,6;MQ=60;FQ=37.6;PV4=0.18,3.5e-05,1,1 GT:PL:GQ 0/1:70,0,66:68 chr1 16332571 . C T 88 . DP=78;VDB=0.0400;AF1=0.5;AC1=1;DP4=20,27,9,20;MQ=59;FQ=91;PV4=0.34,1.9e-27,1,0.19 GT:PL:GQ 0/1:118,0,255:99 chr1 16342237 . A G 222 . DP=34;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,9,22;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 16344360 . A G 213 . DP=29;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,15,12;MQ=60;FQ=-108 GT:PL:GQ 1/1:246,81,0:99 chr1 16344402 . G A 169 . DP=29;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,8,19;MQ=60;FQ=-108 GT:PL:GQ 1/1:202,81,0:99 chr1 16344494 . G A 140 . DP=21;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,9,10;MQ=60;FQ=-84 GT:PL:GQ 1/1:173,57,0:99 chr1 16344625 . C G 222 . DP=16;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,4,12;MQ=59;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 16344664 . G A 10.4 . DP=8;VDB=0.0222;AF1=0.5;AC1=1;DP4=1,4,0,2;MQ=60;FQ=13.2;PV4=1,0.035,1,1 GT:PL:GQ 0/1:40,0,143:42 chr1 16344683 . C T 40 . DP=7;VDB=0.0343;AF1=0.5;AC1=1;DP4=0,2,2,3;MQ=60;FQ=26.9;PV4=1,4.5e-05,1,0.29 GT:PL:GQ 0/1:70,0,54:57 chr1 16344730 . T C 16.9 . DP=2;VDB=0.0137;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:48,6,0:10 chr1 16345619 . T C 105 . DP=36;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,35,0;MQ=60;FQ=-132 GT:PL:GQ 1/1:138,105,0:99 chr1 16345735 . C T 187 . DP=125;VDB=0.0365;AF1=0.5;AC1=1;DP4=31,25,37,25;MQ=60;FQ=190;PV4=0.71,2.9e-33,1,0.28 GT:PL:GQ 0/1:217,0,255:99 chr1 16346009 . GCCCCC GCCCCCC 57.5 . INDEL;DP=45;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,17,2,22;MQ=59;FQ=35.5;PV4=1,1,1,0.2 GT:PL:GQ 0/1:95,0,70:73 chr1 16349080 . G A 6.98 . DP=6;VDB=0.0199;AF1=0.4999;AC1=1;DP4=3,0,3,0;MQ=60;FQ=9.53;PV4=1,0.0043,1,0.23 GT:PL:GQ 0/1:36,0,76:37 chr1 16351275 . A G 58 . DP=16;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,16,0;MQ=60;FQ=-75 GT:PL:GQ 1/1:91,48,0:93 chr1 16352937 . G A 188 . DP=46;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,27,17;MQ=59;FQ=-159 GT:PL:GQ 1/1:221,132,0:99 chr1 16354642 . AT ATT 197 . INDEL;DP=40;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,18,2,17;MQ=57;FQ=163;PV4=1,1,0.058,0.24 GT:PL:GQ 0/1:235,0,198:99 chr1 16356501 . G A 222 . DP=16;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,10;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr1 16356583 . C T 59 . DP=15;VDB=0.0287;AF1=0.5;AC1=1;DP4=3,8,1,3;MQ=59;FQ=62;PV4=1,1,1,1 GT:PL:GQ 0/1:89,0,211:92 chr1 16358148 . T C 201 . DP=42;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,35,7;MQ=60;FQ=-153 GT:PL:GQ 1/1:234,126,0:99 chr1 16358685 . C G 222 . DP=90;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,34,49;MQ=60;FQ=-239;PV4=1,0.059,0.46,0.23 GT:PL:GQ 1/1:255,212,0:99 chr1 16358932 . T C 176 . DP=87;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,57,24;MQ=59;FQ=-271 GT:PL:GQ 1/1:209,244,0:99 chr1 16359052 . A G 19 . DP=51;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:51,9,0:15 chr1 16359106 . C T 74.1 . DP=7;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:107,21,0:39 chr1 16359123 . A G 68 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:100,9,0:16 chr1 16361916 . G A 56 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,3,0;MQ=52;FQ=-36 GT:PL:GQ 1/1:88,9,0:16 chr1 16362543 . C G 8.64 . DP=11;VDB=0.0014;AF1=0.5;AC1=1;DP4=7,0,2,1;MQ=28;FQ=11.3;PV4=0.3,0.15,0.066,1 GT:PL:GQ 0/1:38,0,98:40 chr1 16362561 . C G 79 . DP=26;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,16,1;MQ=29;FQ=-78 GT:PL:GQ 1/1:112,51,0:99 chr1 16362621 . G A 212 . DP=105;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,71,29;MQ=43;FQ=-282 GT:PL:GQ 1/1:245,255,0:99 chr1 16362661 . A C 222 . DP=138;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,83,54;MQ=48;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 16362712 . C T 111 . DP=123;VDB=0.0400;AF1=0.5;AC1=1;DP4=21,38,22,35;MQ=50;FQ=114;PV4=0.85,7.3e-39,0.016,1 GT:PL:GQ 0/1:141,0,255:99 chr1 16362719 . C T 132 . DP=121;VDB=0.0398;AF1=0.5;AC1=1;DP4=17,40,17,41;MQ=50;FQ=135;PV4=1,3.5e-34,7.4e-05,1 GT:PL:GQ 0/1:162,0,255:99 chr1 16370899 . G A 6.02 . DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr1 16371067 . G T 225 . DP=44;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,5,19,5;MQ=60;FQ=224;PV4=0.73,1,1,1 GT:PL:GQ 0/1:255,0,253:99 chr1 16371932 . A C 63 . DP=3;VDB=0.0107;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:95,9,0:16 chr1 16372003 . G C 160 . DP=21;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,1,7,3;MQ=59;FQ=160;PV4=0.31,0.037,0.15,0.18 GT:PL:GQ 0/1:190,0,190:99 chr1 16373124 . A G 217 . DP=81;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,56,23;MQ=57;FQ=-265 GT:PL:GQ 1/1:250,238,0:99 chr1 16373199 . CCTTCT CCT 214 . INDEL;DP=80;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,48;MQ=56;FQ=-258 GT:PL:GQ 1/1:255,223,0:99 chr1 16373282 . A G 70 . DP=20;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,20;MQ=60;FQ=-87 GT:PL:GQ 1/1:103,60,0:99 chr1 16374533 . G C 216 . DP=32;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,13,18;MQ=60;FQ=-120 GT:PL:GQ 1/1:249,93,0:99 chr1 16374622 . C G 141 . DP=13;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,5,8;MQ=60;FQ=-66 GT:PL:GQ 1/1:174,39,0:75 chr1 16374656 . A G 85.1 . DP=8;VDB=0.0197;AF1=1;AC1=2;DP4=0,0,4,3;MQ=60;FQ=-48 GT:PL:GQ 1/1:118,21,0:39 chr1 16374994 . C T 118 . DP=15;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,7,6;MQ=32;FQ=-66 GT:PL:GQ 1/1:151,39,0:75 chr1 16376191 . C T 133 . DP=18;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,17,0;MQ=31;FQ=-78 GT:PL:GQ 1/1:166,51,0:99 chr1 16376230 . A AT 77.5 . INDEL;DP=32;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,0;MQ=31;FQ=-76.5 GT:PL:GQ 1/1:118,42,0:81 chr1 16376278 . G A 185 . DP=64;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,53,11;MQ=48;FQ=-220 GT:PL:GQ 1/1:218,193,0:99 chr1 16376319 . T C 222 . DP=93;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,50,39;MQ=49;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 16376458 . T C 89 . DP=24;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,3,20;MQ=57;FQ=-96 GT:PL:GQ 1/1:122,69,0:99 chr1 16378649 . C G 7.8 . DP=5;VDB=0.0170;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=56;FQ=10.4;PV4=1,0.0042,0.25,1 GT:PL:GQ 0/1:37,0,55:39 chr1 16379008 . C T 54.3 . DP=5;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,5;MQ=56;FQ=-42 GT:PL:GQ 1/1:87,15,0:27 chr1 16380196 . T C 222 . DP=51;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,19,32;MQ=52;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 16380243 . A G 60 . DP=17;VDB=0.0008;AF1=0.5;AC1=1;DP4=1,3,1,12;MQ=45;FQ=57.6;PV4=0.43,5.7e-10,0.0031,1 GT:PL:GQ 0/1:90,0,86:88 chr1 16380252 . C T 4.13 . DP=15;VDB=0.0004;AF1=0.4998;AC1=1;DP4=0,3,0,11;MQ=46;FQ=6.19;PV4=1,6.1e-10,0.013,1 GT:PL:GQ 0/1:32,0,55:31 chr1 16381792 . T A 188 . DP=39;VDB=0.0190;AF1=0.5;AC1=1;DP4=18,2,17,2;MQ=58;FQ=191;PV4=1,0.26,0.034,1 GT:PL:GQ 0/1:218,0,232:99 chr1 16381816 . C T 102 . DP=66;VDB=0.0322;AF1=0.5;AC1=1;DP4=27,6,29,3;MQ=59;FQ=105;PV4=0.48,7.6e-27,0.037,1 GT:PL:GQ 0/1:132,0,255:99 chr1 16382086 . C T 125 . DP=36;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,1,15,8;MQ=60;FQ=128;PV4=0.12,5.8e-16,1,1 GT:PL:GQ 0/1:155,0,170:99 chr1 16382791 . G C 23 . DP=54;VDB=0.0066;AF1=0.5;AC1=1;DP4=30,3,21,0;MQ=50;FQ=26;PV4=0.27,2.8e-34,2.6e-31,0.0068 GT:PL:GQ 0/1:53,0,255:56 chr1 16382827 . CTCTTC CTC 95.5 . INDEL;DP=106;VDB=0.0345;AF1=0.5;AC1=1;DP4=49,10,23,5;MQ=52;FQ=98.5;PV4=1,4.9e-39,4.6e-57,1 GT:PL:GQ 0/1:133,0,255:99 chr1 16382877 . A G 222 . DP=128;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,61,63;MQ=51;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 16382880 . T A 185 . DP=127;VDB=0.0345;AF1=0.5;AC1=1;DP4=27,30,31,35;MQ=51;FQ=188;PV4=1,3e-26,1,0.17 GT:PL:GQ 0/1:215,0,255:99 chr1 16383267 . A G 158 . DP=20;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,1,9,2;MQ=52;FQ=126;PV4=1,0.4,0.49,1 GT:PL:GQ 0/1:188,0,153:99 chr1 16383329 . TCCCCCC TCCCCCCC 62.5 . INDEL;DP=16;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,2,7;MQ=47;FQ=-61.5 GT:PL:GQ 1/1:103,27,0:51 chr1 16383348 . C T 26 . DP=22;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,5,2,5;MQ=38;FQ=29;PV4=0.37,1.2e-08,0.29,1 GT:PL:GQ 0/1:56,0,171:59 chr1 16383448 . A C 200 . DP=51;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,27;MQ=36;FQ=-178 GT:PL:GQ 1/1:233,151,0:99 chr1 16383515 . C T 19.1 . DP=8;VDB=0.0006;AF1=0.5003;AC1=1;DP4=0,3,0,5;MQ=20;FQ=4.11;PV4=1,0.00083,0.44,1 GT:PL:GQ 0/1:49,0,29:32 chr1 16383574 . A T 16.1 . DP=9;VDB=0.0008;AF1=0.5;AC1=1;DP4=5,0,4,0;MQ=33;FQ=19.1;PV4=1,2.8e-07,0.4,0.12 GT:PL:GQ 0/1:46,0,98:49 chr1 16383581 . G T 7.8 . DP=10;VDB=0.0003;AF1=0.5;AC1=1;DP4=5,0,5,0;MQ=33;FQ=10.4;PV4=1,1.3e-07,1,1 GT:PL:GQ 0/1:37,0,91:39 chr1 16383605 . A G 31 . DP=19;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,0,8,0;MQ=32;FQ=34;PV4=1,2.3e-10,1,1 GT:PL:GQ 0/1:61,0,122:64 chr1 16383668 . T G 176 . DP=67;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,42,22;MQ=40;FQ=-220 GT:PL:GQ 1/1:209,193,0:99 chr1 16383682 . G C 34 . DP=80;VDB=0.0365;AF1=0.5;AC1=1;DP4=30,22,17,8;MQ=43;FQ=37;PV4=0.46,3.1e-32,0.28,0.29 GT:PL:GQ 0/1:64,0,255:67 chr1 16383742 . C G 131 . DP=92;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,31,15,30;MQ=47;FQ=134;PV4=1,1.8e-31,0.49,1 GT:PL:GQ 0/1:161,0,255:99 chr1 16385042 . G A 24.5 . DP=3;VDB=0.0184;AF1=0.5718;AC1=1;DP4=1,0,2,0;MQ=50;FQ=-21;PV4=1,0.061,1,1 GT:PL:GQ 0/1:54,0,6:9 chr1 16385175 . G A 139 . DP=16;VDB=0.0345;AF1=0.501;AC1=1;DP4=2,0,6,8;MQ=34;FQ=-4.75;PV4=0.47,0.083,0.042,0.26 GT:PL:GQ 0/1:169,0,24:27 chr1 16385184 . G A 51 . DP=17;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,4,3,4;MQ=36;FQ=54;PV4=0.64,8.8e-05,1,1 GT:PL:GQ 0/1:81,0,148:84 chr1 16385248 . C T 103 . DP=8;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,3,5;MQ=46;FQ=-51 GT:PL:GQ 1/1:136,24,0:45 chr1 16385250 . A G 110 . DP=8;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,3,5;MQ=46;FQ=-51 GT:PL:GQ 1/1:143,24,0:45 chr1 16385797 . C G 120 . DP=13;VDB=0.0002;AF1=0.5064;AC1=1;DP4=2,0,11,0;MQ=53;FQ=-11.3;PV4=1,0.095,1,0.25 GT:PL:GQ 0/1:150,0,16:19 chr1 16385815 . G A 40 . DP=18;VDB=0.0066;AF1=0.5;AC1=1;DP4=10,0,7,0;MQ=56;FQ=43;PV4=1,2.9e-09,1,0.18 GT:PL:GQ 0/1:70,0,155:73 chr1 16385980 . G A 155 . DP=82;VDB=0.0345;AF1=1;AC1=2;DP4=0,5,16,53;MQ=54;FQ=-133;PV4=0.58,1.2e-08,1,1 GT:PL:GQ 1/1:188,106,0:99 chr1 16386008 . T C 132 . DP=48;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,6,41;MQ=52;FQ=-168 GT:PL:GQ 1/1:165,141,0:99 chr1 16386416 . G A 88.5 . DP=4;VDB=0.0143;AF1=1;AC1=2;DP4=0,0,3,1;MQ=35;FQ=-39 GT:PL:GQ 1/1:121,12,0:21 chr1 16386447 . G C 53.3 . DP=5;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,2;MQ=34;FQ=-42 GT:PL:GQ 1/1:86,15,0:27 chr1 16386495 . C T 22 . DP=5;VDB=0.0223;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=33;FQ=15.6;PV4=1,0.019,1,1 GT:PL:GQ 0/1:52,0,43:46 chr1 16388556 . C T 24 . DP=3;VDB=0.0139;AF1=0.5025;AC1=1;DP4=1,0,2,0;MQ=42;FQ=-7.78;PV4=1,1,1,0.33 GT:PL:GQ 0/1:54,0,20:23 chr1 16388646 . T C 125 . DP=9;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,5,4;MQ=51;FQ=-54 GT:PL:GQ 1/1:158,27,0:51 chr1 16388709 . G C 88 . DP=11;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,4,2,5;MQ=41;FQ=60;PV4=0.49,0.18,0.0011,1 GT:PL:GQ 0/1:118,0,87:90 chr1 16388737 . G A 6.98 . DP=9;VDB=0.0211;AF1=0.4999;AC1=1;DP4=2,4,0,3;MQ=42;FQ=9.53;PV4=0.5,0.0065,1,1 GT:PL:GQ 0/1:36,0,119:37 chr1 16451767 . G A 165 . DP=82;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,33,7,34;MQ=59;FQ=168;PV4=1,2.7e-15,0.083,0.39 GT:PL:GQ 0/1:195,0,255:99 chr1 16464673 . G A 27 . DP=46;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,9,11,3;MQ=60;FQ=30;PV4=0.47,1.6e-14,1,1 GT:PL:GQ 0/1:57,0,255:60 chr1 16474839 . ACCCCC ACCCC 47.5 . INDEL;DP=47;VDB=0.0216;AF1=0.5;AC1=1;DP4=23,2,19,3;MQ=60;FQ=43.5;PV4=0.65,0.0074,1,0.49 GT:PL:GQ 0/1:85,0,79:81 chr1 16475123 . C T 225 . DP=70;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,19,16,12;MQ=59;FQ=225;PV4=0.62,0.03,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 16475126 . C T 225 . DP=69;VDB=0.0298;AF1=0.5;AC1=1;DP4=18,19,17,12;MQ=59;FQ=225;PV4=0.46,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 16477305 . C T 90 . DP=7;VDB=0.0140;AF1=0.5025;AC1=1;DP4=1,0,6,0;MQ=60;FQ=-7.78;PV4=1,0.25,1,0.29 GT:PL:GQ 0/1:120,0,20:23 chr1 16528218 . G T 25 . DP=10;VDB=0.0110;AF1=0.5;AC1=1;DP4=5,1,2,2;MQ=58;FQ=28;PV4=0.5,9.6e-05,0.12,0.49 GT:PL:GQ 0/1:55,0,152:58 chr1 16528843 . A G 30 . DP=5;VDB=0.0173;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=33;PV4=1,1,1,1 GT:PL:GQ 0/1:60,0,87:63 chr1 16533022 . C T 92 . DP=37;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,14,2,20;MQ=59;FQ=95;PV4=1,1.8e-15,1,1 GT:PL:GQ 0/1:122,0,173:99 chr1 16542937 . T G 6.2 . DP=7;VDB=0.0027;AF1=0.4999;AC1=1;DP4=3,0,4,0;MQ=60;FQ=8.65;PV4=1,9.5e-06,1,0.34 GT:PL:GQ 0/1:35,0,78:36 chr1 16543175 . A C 222 . DP=30;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,6,24;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 16558838 . C A 80 . DP=18;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,7,3,7;MQ=60;FQ=83;PV4=0.59,7.4e-05,1,1 GT:PL:GQ 0/1:110,0,153:99 chr1 16559541 . C G 47 . DP=29;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,16,1,9;MQ=60;FQ=50;PV4=1,1e-13,1,0.055 GT:PL:GQ 0/1:77,0,213:80 chr1 16562968 . C A 66 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:98,9,0:16 chr1 16577908 . G C 178 . DP=66;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,10,21,17;MQ=60;FQ=181;PV4=0.8,1.1e-21,1,1 GT:PL:GQ 0/1:208,0,255:99 chr1 16621183 . C T 92 . DP=23;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,21,1;MQ=59;FQ=-93 GT:PL:GQ 1/1:125,66,0:99 chr1 16641899 . C T 112 . DP=47;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,16,9,10;MQ=60;FQ=115;PV4=0.77,5.3e-18,1,1 GT:PL:GQ 0/1:142,0,255:99 chr1 16730582 . C G 26 . DP=7;VDB=0.0199;AF1=0.5;AC1=1;DP4=1,2,0,4;MQ=60;FQ=29;PV4=0.43,0.0048,1,1 GT:PL:GQ 0/1:56,0,78:59 chr1 16731646 . T C 94 . DP=25;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:127,33,0:63 chr1 16731653 . C T 94 . DP=22;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,7,3,10;MQ=56;FQ=86.6;PV4=0.52,4.8e-08,0.093,1 GT:PL:GQ 0/1:124,0,114:99 chr1 16731661 . T C 110 . DP=17;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,5,2,8;MQ=57;FQ=43;PV4=0.52,0.41,0.16,0.47 GT:PL:GQ 0/1:140,0,70:73 chr1 16736132 . T C 163 . DP=15;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,10,4;MQ=58;FQ=-69 GT:PL:GQ 1/1:196,42,0:81 chr1 16736546 . C T 222 . DP=23;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,2,20;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 16778265 . G T 39 . DP=12;VDB=0.0099;AF1=0.5;AC1=1;DP4=5,0,7,0;MQ=60;FQ=42;PV4=1,9e-07,1,1 GT:PL:GQ 0/1:69,0,110:72 chr1 16778370 . G A 174 . DP=45;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,9,9,16;MQ=59;FQ=177;PV4=0.36,1e-15,0.19,0.33 GT:PL:GQ 0/1:204,0,255:99 chr1 16802890 . G A 41.2 . DP=4;VDB=0.0089;AF1=0.5207;AC1=1;DP4=1,0,3,0;MQ=45;FQ=-16.1;PV4=1,0.39,1,0.12 GT:PL:GQ 0/1:71,0,11:14 chr1 16803267 . T C 44.3 . DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,5,0;MQ=36;FQ=-42 GT:PL:GQ 1/1:77,15,0:27 chr1 16862454 . T G 225 . DP=554;VDB=0.0380;AF1=0.5;AC1=1;DP4=130,114,189,103;MQ=33;FQ=225;PV4=0.0081,0.44,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 16862708 . T G 41 . DP=31;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,9,1,12;MQ=32;FQ=44;PV4=1,1.3e-13,8.4e-05,1 GT:PL:GQ 0/1:71,0,137:74 chr1 16863213 . C G 24 . DP=18;VDB=0.0190;AF1=0.5;AC1=1;DP4=12,1,5,0;MQ=50;FQ=27;PV4=1,0.11,0.00076,1 GT:PL:GQ 0/1:54,0,191:57 chr1 16863229 . C T 34 . DP=33;VDB=0.0140;AF1=0.5;AC1=1;DP4=20,1,12,0;MQ=48;FQ=37;PV4=1,2.5e-10,3.6e-08,0.45 GT:PL:GQ 0/1:64,0,208:67 chr1 16863233 . A C 26 . DP=35;VDB=0.0140;AF1=0.5;AC1=1;DP4=21,1,13,0;MQ=48;FQ=29;PV4=1,1.1e-15,8e-09,0.45 GT:PL:GQ 0/1:56,0,212:59 chr1 16863238 . T C 57 . DP=41;VDB=0.0164;AF1=0.5;AC1=1;DP4=24,1,16,0;MQ=47;FQ=60;PV4=1,0.37,4e-11,0.45 GT:PL:GQ 0/1:87,0,211:90 chr1 16863259 . T G 23 . DP=55;VDB=0.0140;AF1=0.5;AC1=1;DP4=30,2,22,0;MQ=48;FQ=26;PV4=0.51,1.2e-15,2.6e-25,1 GT:PL:GQ 0/1:53,0,247:56 chr1 16863304 . T C 27 . DP=115;VDB=0.0244;AF1=0.5;AC1=1;DP4=45,14,24,7;MQ=46;FQ=30;PV4=1,1.2e-27,1.3e-11,0.34 GT:PL:GQ 0/1:57,0,255:60 chr1 16863308 . G T 18.1 . DP=114;VDB=0.0271;AF1=0.5;AC1=1;DP4=44,16,21,7;MQ=46;FQ=21;PV4=1,2.2e-21,3.1e-10,0.49 GT:PL:GQ 0/1:48,0,255:51 chr1 16863314 . A G 32 . DP=117;VDB=0.0216;AF1=0.5;AC1=1;DP4=45,18,19,7;MQ=48;FQ=35;PV4=1,4.9e-30,1.6e-10,1 GT:PL:GQ 0/1:62,0,255:65 chr1 16863328 . T G 160 . DP=146;VDB=0.0298;AF1=0.5;AC1=1;DP4=45,31,46,20;MQ=46;FQ=163;PV4=0.22,4.2e-18,1.5e-14,1 GT:PL:GQ 0/1:190,0,255:99 chr1 16863352 . C T 215 . DP=154;VDB=0.0298;AF1=0.5;AC1=1;DP4=33,40,41,34;MQ=47;FQ=218;PV4=0.32,2.1e-07,8.7e-16,1 GT:PL:GQ 0/1:245,0,255:99 chr1 16863398 . A C 166 . DP=139;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,52,20,48;MQ=48;FQ=169;PV4=0.56,4.2e-42,4e-13,1 GT:PL:GQ 0/1:196,0,255:99 chr1 16948474 . C G 67 . DP=20;VDB=0.0393;AF1=0.5;AC1=1;DP4=5,4,4,4;MQ=59;FQ=70;PV4=1,5.6e-09,1,0.16 GT:PL:GQ 0/1:97,0,216:99 chr1 16969381 . C T 225 . DP=106;VDB=0.0345;AF1=0.5;AC1=1;DP4=27,29,22,27;MQ=50;FQ=225;PV4=0.84,0.47,8.3e-20,0.45 GT:PL:GQ 0/1:255,0,255:99 chr1 16972068 . A G 6.98 . DP=32;VDB=0.0392;AF1=0.4999;AC1=1;DP4=18,4,4,0;MQ=38;FQ=9.53;PV4=1,1,1,1 GT:PL:GQ 0/1:36,0,217:37 chr1 16972189 . C A 34 . DP=55;VDB=0.0216;AF1=0.5;AC1=1;DP4=15,29,6,5;MQ=54;FQ=37;PV4=0.3,6.3e-06,1,1 GT:PL:GQ 0/1:64,0,255:67 chr1 16972940 . G A 21 . DP=5;VDB=0.0020;AF1=0.5;AC1=1;DP4=0,2,2,1;MQ=60;FQ=17.1;PV4=0.4,0.012,1,1 GT:PL:GQ 0/1:51,0,45:47 chr1 16973152 . A G 171 . DP=67;VDB=0.0399;AF1=0.5;AC1=1;DP4=35,11,8,9;MQ=50;FQ=174;PV4=0.037,1,1,1 GT:PL:GQ 0/1:201,0,255:99 chr1 16973184 . G A 111 . DP=77;VDB=0.0345;AF1=0.5;AC1=1;DP4=41,20,6,10;MQ=45;FQ=114;PV4=0.044,0.26,1,1 GT:PL:GQ 0/1:141,0,255:99 chr1 16973919 . A G 60 . DP=41;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,13,4,9;MQ=32;FQ=63;PV4=0.31,2.9e-12,1,0.27 GT:PL:GQ 0/1:90,0,245:93 chr1 16974637 . T C 25 . DP=53;VDB=0.0053;AF1=0.5;AC1=1;DP4=13,31,1,7;MQ=54;FQ=28;PV4=0.42,0.19,0.031,1 GT:PL:GQ 0/1:55,0,255:58 chr1 16974666 . C T 50 . DP=42;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,24,3,5;MQ=50;FQ=53;PV4=0.69,0.081,0.22,1 GT:PL:GQ 0/1:80,0,255:83 chr1 16974869 . G C 18.1 . DP=19;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,6,2,3;MQ=51;FQ=21;PV4=1,3.6e-05,1,0.086 GT:PL:GQ 0/1:48,0,222:51 chr1 16975002 . C T 28 . DP=85;VDB=0.0271;AF1=0.5;AC1=1;DP4=41,18,22,3;MQ=47;FQ=31;PV4=0.1,2.2e-25,1.5e-07,1 GT:PL:GQ 0/1:58,0,255:61 chr1 16976032 . A C 8.64 . DP=122;VDB=0.0392;AF1=0.5;AC1=1;DP4=43,43,12,19;MQ=48;FQ=11.3;PV4=0.3,7.6e-28,1,1 GT:PL:GQ 0/1:38,0,255:40 chr1 16976539 . A G 22 . DP=11;VDB=0.0008;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=28;FQ=23.6;PV4=1,0.0078,0.39,1 GT:PL:GQ 0/1:52,0,56:54 chr1 16976641 . C T 16.1 . DP=82;VDB=0.0216;AF1=0.5;AC1=1;DP4=42,21,11,6;MQ=36;FQ=19.1;PV4=1,7e-18,0.16,1 GT:PL:GQ 0/1:46,0,255:49 chr1 16976679 . G A 225 . DP=82;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,17,26,20;MQ=33;FQ=198;PV4=0.66,0.0058,1,1 GT:PL:GQ 0/1:255,0,225:99 chr1 17017675 . C A 136 . DP=183;VDB=0.0365;AF1=0.5;AC1=1;DP4=43,64,29,38;MQ=60;FQ=139;PV4=0.75,5.4e-39,0.1,0.39 GT:PL:GQ 0/1:166,0,255:99 chr1 17022952 . C A 222 . DP=44;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,24,18;MQ=59;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 17023126 . C G 55 . DP=32;VDB=0.0384;AF1=0.5;AC1=1;DP4=8,13,6,3;MQ=60;FQ=58;PV4=0.24,6.8e-12,1,0.27 GT:PL:GQ 0/1:85,0,255:88 chr1 17023143 . C T 103 . DP=37;VDB=0.0373;AF1=0.5;AC1=1;DP4=13,8,11,4;MQ=59;FQ=106;PV4=0.72,4.1e-10,0.31,0.14 GT:PL:GQ 0/1:133,0,255:99 chr1 17023182 . C G 108 . DP=38;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,8,13,3;MQ=60;FQ=111;PV4=0.28,8.5e-08,1,1 GT:PL:GQ 0/1:138,0,255:99 chr1 17023376 . C T 160 . DP=98;VDB=0.0400;AF1=0.5;AC1=1;DP4=24,33,22,18;MQ=59;FQ=163;PV4=0.22,1.1e-27,0.13,0.26 GT:PL:GQ 0/1:190,0,255:99 chr1 17023403 . G A 102 . DP=93;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,49,7,10;MQ=59;FQ=105;PV4=0.58,0.003,0.31,1 GT:PL:GQ 0/1:132,0,255:99 chr1 17023483 . C T 67 . DP=28;VDB=0.0014;AF1=0.5;AC1=1;DP4=2,13,3,9;MQ=59;FQ=70;PV4=0.63,2.6e-12,0.14,1 GT:PL:GQ 0/1:97,0,227:99 chr1 17026004 . C G 32 . DP=12;VDB=0.0254;AF1=0.5;AC1=1;DP4=3,3,4,0;MQ=60;FQ=35;PV4=0.2,0.43,1,0.4 GT:PL:GQ 0/1:62,0,115:65 chr1 17026043 . ggcagc gGCAgcagc 217 . INDEL;DP=17;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,1,3,4;MQ=60;FQ=164;PV4=0.27,1,1,1 GT:PL:GQ 0/1:255,0,199:99 chr1 17026087 . G A 100 . DP=22;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,8,2,5;MQ=59;FQ=103;PV4=0.65,1,0.074,1 GT:PL:GQ 0/1:130,0,236:99 chr1 17026551 . G C 88 . DP=8;VDB=0.0392;AF1=0.5;AC1=1;DP4=0,3,1,4;MQ=60;FQ=48;PV4=1,0.16,1,1 GT:PL:GQ 0/1:118,0,75:78 chr1 17029257 . T C 94 . DP=38;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,23,4,9;MQ=57;FQ=97;PV4=0.15,2.8e-06,0.015,1 GT:PL:GQ 0/1:124,0,231:99 chr1 17030716 . G A 43 . DP=27;VDB=0.0019;AF1=0.5;AC1=1;DP4=4,14,2,6;MQ=59;FQ=46;PV4=1,1.7e-07,1,1 GT:PL:GQ 0/1:73,0,255:76 chr1 17033758 . A G 13.2 . DP=34;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,9,8,0;MQ=58;FQ=16.1;PV4=0.073,1.5e-05,0.37,1 GT:PL:GQ 0/1:43,0,255:46 chr1 17033854 . C T 127 . DP=47;VDB=0.0398;AF1=0.5;AC1=1;DP4=18,16,3,10;MQ=59;FQ=130;PV4=0.1,1,0.12,1 GT:PL:GQ 0/1:157,0,255:99 chr1 17044511 . T C 62 . DP=11;VDB=0.0006;AF1=0.5;AC1=1;DP4=3,0,7,1;MQ=55;FQ=40;PV4=1,4.2e-05,1,0.41 GT:PL:GQ 0/1:92,0,67:70 chr1 17044589 . G A 28 . DP=36;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,9,7,1;MQ=49;FQ=31;PV4=0.38,6.9e-06,1,1 GT:PL:GQ 0/1:58,0,255:61 chr1 17044695 . A G 36 . DP=14;VDB=0.0373;AF1=0.5;AC1=1;DP4=0,9,1,4;MQ=49;FQ=39;PV4=0.36,0.0017,0.034,0.082 GT:PL:GQ 0/1:66,0,144:69 chr1 17046456 . T C 117 . DP=46;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,10,11,6;MQ=60;FQ=120;PV4=1,2.8e-10,1,1 GT:PL:GQ 0/1:147,0,255:99 chr1 17046595 . T C 129 . DP=79;VDB=0.0400;AF1=0.5;AC1=1;DP4=19,32,12,14;MQ=59;FQ=132;PV4=0.47,7e-18,1,0.13 GT:PL:GQ 0/1:159,0,255:99 chr1 17046613 . C T 206 . DP=72;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,34,9,14;MQ=59;FQ=209;PV4=0.43,0.0018,0.49,0.052 GT:PL:GQ 0/1:236,0,255:99 chr1 17083807 . T C 13.2 . DP=22;VDB=0.0006;AF1=0.5;AC1=1;DP4=7,9,1,4;MQ=32;FQ=16.1;PV4=0.61,1,0.13,0.2 GT:PL:GQ 0/1:43,0,210:46 chr1 17084006 . C T 40 . DP=29;VDB=0.0033;AF1=0.5;AC1=1;DP4=13,0,15,0;MQ=20;FQ=30.8;PV4=1,2.6e-16,1,0.24 GT:PL:GQ 0/1:70,0,58:61 chr1 17084968 . G C 96 . DP=78;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,12,32,7;MQ=38;FQ=99;PV4=0.19,3.5e-29,1,0.4 GT:PL:GQ 0/1:126,0,255:99 chr1 17085165 . G C 159 . DP=22;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,6,15;MQ=24;FQ=-90 GT:PL:GQ 1/1:192,63,0:99 chr1 17085255 . A G 42 . DP=14;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,4,6,2;MQ=25;FQ=24;PV4=0.1,0.0002,1,1 GT:PL:GQ 0/1:72,0,51:54 chr1 17085265 . T C 39.1 . DP=8;VDB=0.0384;AF1=1;AC1=2;DP4=0,1,6,1;MQ=23;FQ=-28;PV4=0.25,0.0047,0.46,0.25 GT:PL:GQ 1/1:68,1,0:4 chr1 17085267 . A G 42.1 . DP=8;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,6,1;MQ=24;FQ=-48 GT:PL:GQ 1/1:75,21,0:39 chr1 17085412 . C T 90 . DP=109;VDB=0.0164;AF1=0.5;AC1=1;DP4=27,47,18,14;MQ=33;FQ=93;PV4=0.086,1,1.7e-05,1 GT:PL:GQ 0/1:120,0,255:99 chr1 17085427 . T C 188 . DP=113;VDB=0.0216;AF1=0.5;AC1=1;DP4=17,37,29,29;MQ=34;FQ=191;PV4=0.056,1,2.8e-11,1 GT:PL:GQ 0/1:218,0,255:99 chr1 17085502 . T C 153 . DP=65;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,22,11,22;MQ=34;FQ=156;PV4=0.39,6e-13,0.075,1 GT:PL:GQ 0/1:183,0,218:99 chr1 17085671 . C G 7.8 . DP=14;VDB=0.0276;AF1=0.5;AC1=1;DP4=4,5,2,2;MQ=36;FQ=10.4;PV4=1,5.1e-06,0.42,1 GT:PL:GQ 0/1:37,0,154:39 chr1 17085834 . G T 139 . DP=30;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,3,10,7;MQ=53;FQ=142;PV4=0.69,7.1e-10,0.015,0.32 GT:PL:GQ 0/1:169,0,186:99 chr1 17086052 . T C 65 . DP=4;VDB=0.0126;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:97,9,0:16 chr1 17086870 . T C 22 . DP=34;VDB=0.0298;AF1=0.5;AC1=1;DP4=19,6,6,3;MQ=44;FQ=25;PV4=0.67,4.8e-10,7.9e-05,1 GT:PL:GQ 0/1:52,0,255:55 chr1 17086941 . C T 76 . DP=76;VDB=0.0271;AF1=0.5;AC1=1;DP4=39,13,24,0;MQ=32;FQ=79;PV4=0.0068,1,1,1 GT:PL:GQ 0/1:106,0,255:99 chr1 17087072 . G A 75 . DP=199;VDB=0.0271;AF1=0.5;AC1=1;DP4=76,79,22,22;MQ=43;FQ=78;PV4=1,1,1.6e-06,1 GT:PL:GQ 0/1:105,0,255:99 chr1 17087262 . C T 96 . DP=149;VDB=0.0392;AF1=0.5;AC1=1;DP4=51,39,29,25;MQ=44;FQ=99;PV4=0.73,5.2e-38,0.0086,1 GT:PL:GQ 0/1:126,0,255:99 chr1 17087365 . C G 118 . DP=124;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,15,39,56;MQ=50;FQ=97;PV4=0.48,9.3e-30,1,0.42 GT:PL:GQ 0/1:148,0,124:99 chr1 17087459 . A G 7.8 . DP=81;VDB=0.0380;AF1=0.5;AC1=1;DP4=31,40,6,3;MQ=50;FQ=10.4;PV4=0.29,1,0.37,1 GT:PL:GQ 0/1:37,0,255:39 chr1 17087521 . G A 96 . DP=67;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,24,11,12;MQ=45;FQ=99;PV4=0.6,5.4e-18,0.012,0.27 GT:PL:GQ 0/1:126,0,255:99 chr1 17087582 . G A 134 . DP=58;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,22,7,20;MQ=47;FQ=137;PV4=1,8.6e-14,2.9e-08,0.23 GT:PL:GQ 0/1:164,0,255:99 chr1 17197563 . G T 192 . DP=114;VDB=0.0244;AF1=0.5;AC1=1;DP4=49,23,25,15;MQ=50;FQ=195;PV4=0.68,0.12,1.4e-33,1 GT:PL:GQ 0/1:222,0,255:99 chr1 17197685 . G A 21 . DP=51;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,36,1,9;MQ=48;FQ=24;PV4=1,0.028,0.00038,1 GT:PL:GQ 0/1:51,0,254:54 chr1 17197724 . C G 4.13 . DP=18;VDB=0.0099;AF1=0.4998;AC1=1;DP4=1,11,0,6;MQ=51;FQ=6.2;PV4=1,8.1e-08,0.00059,1 GT:PL:GQ 0/1:32,0,185:31 chr1 17198518 . T G 16.9 . DP=2;VDB=0.0108;AF1=1;AC1=2;DP4=0,0,1,1;MQ=29;FQ=-33 GT:PL:GQ 1/1:48,6,0:10 chr1 17248500 . A G 207 . DP=23;VDB=0.0398;AF1=0.5;AC1=1;DP4=8,0,9,4;MQ=60;FQ=92;PV4=0.13,1,1,0.25 GT:PL:GQ 0/1:237,0,119:99 chr1 17248532 . A G 174 . DP=26;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,9;MQ=60;FQ=-99 GT:PL:GQ 1/1:207,72,0:99 chr1 17249395 . A G 225 . DP=75;VDB=0.0140;AF1=0.5;AC1=1;DP4=3,22,8,39;MQ=60;FQ=179;PV4=0.74,1,1,1 GT:PL:GQ 0/1:255,0,206:99 chr1 17250836 . A G 52 . DP=24;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,7,5,3;MQ=60;FQ=55;PV4=1,3.9e-09,1,0.35 GT:PL:GQ 0/1:82,0,255:85 chr1 17251055 . C T 189 . DP=28;VDB=0.0393;AF1=0.5;AC1=1;DP4=2,8,2,14;MQ=60;FQ=148;PV4=0.63,1,1,0.16 GT:PL:GQ 0/1:219,0,175:99 chr1 17265327 . A G 152 . DP=47;VDB=0.0399;AF1=0.5;AC1=1;DP4=25,7,9,4;MQ=59;FQ=155;PV4=0.7,0.48,0.059,0.034 GT:PL:GQ 0/1:182,0,255:99 chr1 17265366 . C G 210 . DP=75;VDB=0.0345;AF1=0.5;AC1=1;DP4=24,29,14,8;MQ=59;FQ=213;PV4=0.21,1,0.013,0.37 GT:PL:GQ 0/1:240,0,255:99 chr1 17265472 . C G 22 . DP=26;VDB=0.0019;AF1=0.5;AC1=1;DP4=3,14,0,9;MQ=60;FQ=25;PV4=0.53,2e-08,1,1 GT:PL:GQ 0/1:52,0,230:55 chr1 17266642 . A G 27 . DP=4;VDB=0.0100;AF1=0.5;AC1=1;DP4=1,1,1,1;MQ=60;FQ=29;PV4=1,0.21,1,0.21 GT:PL:GQ 0/1:57,0,63:59 chr1 17267302 . A G 59 . DP=28;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,7,5,3;MQ=60;FQ=62;PV4=1,0.00039,1,1 GT:PL:GQ 0/1:89,0,255:92 chr1 17267496 . C T 35 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,15,2,5;MQ=59;FQ=38;PV4=1,1.1e-05,1,1 GT:PL:GQ 0/1:65,0,255:68 chr1 17270845 . C CG 61.5 . INDEL;DP=15;VDB=0.0066;AF1=0.5;AC1=1;DP4=6,5,1,3;MQ=60;FQ=64.5;PV4=0.57,1,1,0.46 GT:PL:GQ 0/1:99,0,238:99 chr1 17273396 . A G 92 . DP=19;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,11,1,5;MQ=59;FQ=95;PV4=1,1,1,1 GT:PL:GQ 0/1:122,0,177:99 chr1 17273444 . G A 50 . DP=13;VDB=0.0161;AF1=0.5;AC1=1;DP4=1,8,0,4;MQ=58;FQ=53;PV4=1,1,1,1 GT:PL:GQ 0/1:80,0,157:83 chr1 17295679 . T C 222 . DP=39;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,11,25;MQ=59;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 17297289 . C T 22.5 . DP=4;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:55,12,0:21 chr1 17301672 . T C 222 . DP=53;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,31;MQ=56;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 17301780 . A G 222 . DP=29;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,11,18;MQ=59;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 17303589 . C T 206 . DP=54;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,28,26;MQ=60;FQ=-190 GT:PL:GQ 1/1:239,163,0:99 chr1 17303792 . C T 38.5 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:71,12,0:21 chr1 17312743 . C T 222 . DP=21;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,6,14;MQ=59;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr1 17313157 . G A 54.5 . DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:87,12,0:21 chr1 17313343 . G A 168 . DP=22;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,17,3;MQ=60;FQ=-87 GT:PL:GQ 1/1:201,60,0:99 chr1 17313654 . C T 222 . DP=33;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,18,12;MQ=59;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 17314942 . G A 222 . DP=40;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,33;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 17319011 . G A 171 . DP=57;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,32,23;MQ=60;FQ=-193 GT:PL:GQ 1/1:204,166,0:99 chr1 17359676 . C A 71 . DP=22;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,20;MQ=60;FQ=-87 GT:PL:GQ 1/1:104,60,0:99 chr1 17371494 . C T 39.8 . DP=2;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:71,6,0:10 chr1 17380497 . G T 140 . DP=34;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,3,28;MQ=60;FQ=-120 GT:PL:GQ 1/1:173,93,0:99 chr1 17395480 . G A 161 . DP=18;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,15,0;MQ=60;FQ=-72 GT:PL:GQ 1/1:194,45,0:87 chr1 17395521 . G A 222 . DP=57;VDB=0.0118;AF1=1;AC1=2;DP4=1,0,55,1;MQ=60;FQ=-171;PV4=1,1,1,0.22 GT:PL:GQ 1/1:255,144,0:99 chr1 17396498 . T C 40.3 . DP=5;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:73,15,0:27 chr1 17396703 . T C 222 . DP=57;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,23,34;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr1 17398066 . G C 114 . DP=20;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,12;MQ=60;FQ=-78 GT:PL:GQ 1/1:147,51,0:99 chr1 17398069 . T C 138 . DP=18;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,11;MQ=60;FQ=-78 GT:PL:GQ 1/1:171,51,0:99 chr1 17401283 . C T 20.6 . DP=4;VDB=0.0143;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:53,12,0:21 chr1 17402116 . G T 173 . DP=44;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,36,7;MQ=60;FQ=-156 GT:PL:GQ 1/1:206,129,0:99 chr1 17402135 . T C 217 . DP=56;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,41,12;MQ=60;FQ=-187 GT:PL:GQ 1/1:250,160,0:99 chr1 17402159 . G A 207 . DP=74;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,49,21;MQ=60;FQ=-238 GT:PL:GQ 1/1:240,211,0:99 chr1 17402255 . C T 222 . DP=87;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,37,43;MQ=60;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr1 17402347 . C T 222 . DP=71;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,50;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr1 17402418 . A G 110 . DP=18;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,16;MQ=60;FQ=-78 GT:PL:GQ 1/1:143,51,0:99 chr1 17405809 . G A 222 . DP=51;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,29,19;MQ=59;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 17405916 . C T 222 . DP=30;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,6,23;MQ=60;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 17405949 . C T 143 . DP=21;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,2,18;MQ=60;FQ=-87 GT:PL:GQ 1/1:176,60,0:99 chr1 17406015 . C T 6.79 . DP=2;VDB=0.0176;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:37,6,0:7 chr1 17410364 . G A 134 . DP=23;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,5,17;MQ=60;FQ=-93 GT:PL:GQ 1/1:167,66,0:99 chr1 17418883 . A G 156 . DP=21;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,15,6;MQ=60;FQ=-90 GT:PL:GQ 1/1:189,63,0:99 chr1 17418894 . A G 162 . DP=27;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,18,8;MQ=60;FQ=-105 GT:PL:GQ 1/1:195,78,0:99 chr1 17419066 . T C 222 . DP=64;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,45;MQ=60;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr1 17422226 . C T 48.3 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:81,15,0:27 chr1 17422302 . T C 156 . DP=60;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,43,16;MQ=60;FQ=-205 GT:PL:GQ 1/1:189,178,0:99 chr1 17431618 . A G 48.3 . DP=5;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,5;MQ=54;FQ=-42 GT:PL:GQ 1/1:81,15,0:27 chr1 17550225 . T C 199 . DP=26;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,13,12;MQ=60;FQ=-102 GT:PL:GQ 1/1:232,75,0:99 chr1 17555316 . C G 14.2 . DP=10;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,4,0,6;MQ=60;FQ=17.1;PV4=1,2.3e-05,1,1 GT:PL:GQ 0/1:44,0,88:47 chr1 17555508 . G T 108 . DP=23;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,5,4,3;MQ=59;FQ=111;PV4=1,0.06,1,0.46 GT:PL:GQ 0/1:138,0,255:99 chr1 17557039 . T C 34 . DP=14;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,1,5,0;MQ=60;FQ=37;PV4=1,4.9e-06,1,0.34 GT:PL:GQ 0/1:64,0,163:67 chr1 17557133 . A C 90 . DP=54;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,13,14,9;MQ=60;FQ=93;PV4=0.58,3.1e-22,1,1 GT:PL:GQ 0/1:120,0,255:99 chr1 17557178 . C T 225 . DP=59;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,18,13,16;MQ=59;FQ=225;PV4=0.79,0.19,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 17557310 . G A 127 . DP=10;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,3,1,6;MQ=60;FQ=42;PV4=1,0.31,1,1 GT:PL:GQ 0/1:157,0,69:72 chr1 17559196 . T C 137 . DP=22;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,1,8,2;MQ=59;FQ=128;PV4=0.57,1,1,1 GT:PL:GQ 0/1:167,0,155:99 chr1 17604437 . C T 140 . DP=35;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,12,5,13;MQ=60;FQ=143;PV4=1,8.1e-11,1,1 GT:PL:GQ 0/1:170,0,247:99 chr1 17681277 . T C 12 . DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr1 17683041 . T C 225 . DP=67;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,21,8,24;MQ=59;FQ=225;PV4=0.78,0.077,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 17685174 . T C 110 . DP=12;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,0,7,0;MQ=60;FQ=77;PV4=1,1,1,0.078 GT:PL:GQ 0/1:140,0,104:99 chr1 17707739 . T C 166 . DP=29;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,6,19;MQ=59;FQ=-102 GT:PL:GQ 1/1:199,75,0:99 chr1 17707798 . C T 71 . DP=8;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:104,24,0:45 chr1 17708349 . G A 42.1 . DP=9;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:75,18,0:33 chr1 17718671 . AGGG AGG 214 . INDEL;DP=27;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,13;MQ=59;FQ=-107 GT:PL:GQ 1/1:255,72,0:99 chr1 17720391 . G A 146 . DP=34;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,25,7;MQ=59;FQ=-123 GT:PL:GQ 1/1:179,96,0:99 chr1 17720439 . T C 222 . DP=46;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,29,16;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 17720615 . A C 159 . DP=47;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,11,32;MQ=58;FQ=-156 GT:PL:GQ 1/1:192,129,0:99 chr1 17720686 . AGGGGGG AGGGGG 118 . INDEL;DP=23;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,11;MQ=60;FQ=-97.5 GT:PL:GQ 1/1:159,63,0:99 chr1 17723739 . G A 108 . DP=11;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,9;MQ=60;FQ=-57 GT:PL:GQ 1/1:141,30,0:57 chr1 17725358 . C G 207 . DP=60;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,13,46;MQ=60;FQ=-205 GT:PL:GQ 1/1:240,178,0:99 chr1 17738487 . T C 9.52 . DP=12;VDB=0.0180;AF1=0.5;AC1=1;DP4=8,0,4,0;MQ=60;FQ=12.3;PV4=1,1.1e-05,1,1 GT:PL:GQ 0/1:39,0,149:41 chr1 17739820 . T C 99 . DP=16;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,14;MQ=60;FQ=-75 GT:PL:GQ 1/1:132,48,0:93 chr1 17914846 . C T 94.3 . DP=5;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:127,15,0:27 chr1 17929980 . C G 225 . DP=42;VDB=0.0190;AF1=0.5;AC1=1;DP4=11,5,19,7;MQ=59;FQ=199;PV4=1,0.25,0.13,1 GT:PL:GQ 0/1:255,0,226:99 chr1 17991052 . T C 176 . DP=39;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,21,15;MQ=60;FQ=-135 GT:PL:GQ 1/1:209,108,0:99 chr1 18017522 . T C 222 . DP=91;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,71,19;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 18017558 . A G 222 . DP=124;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,68,49;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 18017704 . C T 206 . DP=61;VDB=0.0271;AF1=1;AC1=2;DP4=0,1,9,48;MQ=60;FQ=-171;PV4=1,0.015,1,1 GT:PL:GQ 1/1:239,144,0:99 chr1 18021406 . T C 222 . DP=52;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,35,16;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 18023290 . C T 184 . DP=22;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,14,8;MQ=60;FQ=-93 GT:PL:GQ 1/1:217,66,0:99 chr1 18023365 . C T 222 . DP=36;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,19,15;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 18023509 . T C 222 . DP=36;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,20,15;MQ=59;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 18023690 . A G 222 . DP=54;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,24,27;MQ=60;FQ=-151;PV4=1,1,1,0.22 GT:PL:GQ 1/1:255,124,0:99 chr1 18023997 . GC GCC 99 . INDEL;DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:139,12,0:21 chr1 18149510 . G T 117 . DP=76;VDB=0.0322;AF1=0.5;AC1=1;DP4=29,4,38,3;MQ=59;FQ=120;PV4=0.69,5e-24,1,1 GT:PL:GQ 0/1:147,0,255:99 chr1 18149566 . C A 225 . DP=131;VDB=0.0392;AF1=0.5;AC1=1;DP4=35,25,43,22;MQ=60;FQ=225;PV4=0.46,0.053,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 18152582 . C T 119 . DP=55;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,16,14,12;MQ=60;FQ=122;PV4=0.59,6e-20,1,1 GT:PL:GQ 0/1:149,0,255:99 chr1 18554345 . T C 45 . DP=58;VDB=0.0099;AF1=0.5;AC1=1;DP4=28,6,17,6;MQ=60;FQ=48;PV4=0.52,3e-28,1,1 GT:PL:GQ 0/1:75,0,255:78 chr1 18554356 . C T 136 . DP=63;VDB=0.0190;AF1=0.5;AC1=1;DP4=28,6,20,7;MQ=59;FQ=139;PV4=0.53,8.4e-21,0.44,0.46 GT:PL:GQ 0/1:166,0,255:99 chr1 18554567 . C T 125 . DP=54;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,22,6,18;MQ=60;FQ=128;PV4=1,3.2e-08,1,1 GT:PL:GQ 0/1:155,0,255:99 chr1 18703523 . A G 172 . DP=41;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,19,2,13;MQ=59;FQ=175;PV4=0.69,1,1,0.31 GT:PL:GQ 0/1:202,0,255:99 chr1 18703538 . G C 122 . DP=33;VDB=0.0140;AF1=0.5;AC1=1;DP4=4,18,1,10;MQ=59;FQ=125;PV4=0.64,0.46,1,1 GT:PL:GQ 0/1:152,0,255:99 chr1 18704862 . A G 225 . DP=53;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,21,7,13;MQ=60;FQ=225;PV4=1,1,1,0.16 GT:PL:GQ 0/1:255,0,255:99 chr1 18807897 . C G 126 . DP=66;VDB=0.0345;AF1=0.5;AC1=1;DP4=25,8,18,13;MQ=60;FQ=129;PV4=0.18,2.9e-20,1,1 GT:PL:GQ 0/1:156,0,255:99 chr1 18807953 . C A 110 . DP=87;VDB=0.0399;AF1=0.5;AC1=1;DP4=29,11,28,16;MQ=60;FQ=113;PV4=0.48,6.3e-31,1,1 GT:PL:GQ 0/1:140,0,255:99 chr1 18808292 . C A 173 . DP=105;VDB=0.0393;AF1=0.5;AC1=1;DP4=31,21,23,25;MQ=60;FQ=176;PV4=0.32,5e-28,1,0.13 GT:PL:GQ 0/1:203,0,255:99 chr1 18808465 . T A 197 . DP=37;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,12,3,12;MQ=59;FQ=200;PV4=0.45,0.43,1,0.48 GT:PL:GQ 0/1:227,0,255:99 chr1 18808526 . A C 131 . DP=29;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,8,9,6;MQ=58;FQ=134;PV4=0.47,7.2e-07,1,1 GT:PL:GQ 0/1:161,0,232:99 chr1 18810344 . G T 72 . DP=20;VDB=0.0099;AF1=0.5;AC1=1;DP4=7,0,13,0;MQ=60;FQ=74.9;PV4=1,3.3e-08,1,0.18 GT:PL:GQ 0/1:102,0,118:99 chr1 19027239 . A G 225 . DP=46;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,8,13,9;MQ=59;FQ=225;PV4=0.76,1,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr1 19071183 . aatggatggatggatggatggatggatggatggatggatggatggatggatgg aatggatggatggatggatggatggatggatggatggatggatggatgg,aatggatggatggatggatggatggatggatggatggatggatgg 98.4 . INDEL;DP=10;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,7,0;MQ=49;FQ=-43.5 GT:PL:GQ 1/1:204,75,66,144,0,132:16 chr1 19166294 . G A 201 . DP=59;VDB=0.0322;AF1=1;AC1=2;DP4=1,0,37,18;MQ=60;FQ=-156;PV4=1,1e-07,0.45,0.25 GT:PL:GQ 1/1:234,129,0:99 chr1 19181015 . G C 200 . DP=61;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,32,26;MQ=60;FQ=-202 GT:PL:GQ 1/1:233,175,0:99 chr1 19181082 . A C 205 . DP=64;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,38,23;MQ=60;FQ=-211 GT:PL:GQ 1/1:238,184,0:99 chr1 19181393 . T C 222 . DP=108;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,50,56;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 19184077 . A G 222 . DP=118;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,46,58;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 19184176 . G A 94 . DP=27;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,3,22;MQ=60;FQ=-102 GT:PL:GQ 1/1:127,75,0:99 chr1 19186129 . G C 222 . DP=56;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,20,33;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr1 19199487 . A G 116 . DP=36;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,13,4,10;MQ=60;FQ=119;PV4=1,4.8e-07,1,0.32 GT:PL:GQ 0/1:146,0,255:99 chr1 19200895 . C T 225 . DP=83;VDB=0.0322;AF1=0.5;AC1=1;DP4=26,27,19,9;MQ=60;FQ=225;PV4=0.16,0.15,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 19201956 . A G 225 . DP=46;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,11,10,12;MQ=60;FQ=225;PV4=0.77,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 19202770 . T C 222 . DP=40;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,18,20;MQ=59;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 19202896 . G A 67 . DP=17;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,6,2,5;MQ=60;FQ=70;PV4=1,2.1e-05,1,0.37 GT:PL:GQ 0/1:97,0,217:99 chr1 19202917 . T C 37 . DP=14;VDB=0.0309;AF1=0.5;AC1=1;DP4=4,6,0,4;MQ=60;FQ=40;PV4=0.25,1,1,0.34 GT:PL:GQ 0/1:67,0,189:70 chr1 19202926 . T C 28 . DP=16;VDB=0.0309;AF1=0.5;AC1=1;DP4=4,8,0,4;MQ=60;FQ=31;PV4=0.52,1,1,0.45 GT:PL:GQ 0/1:58,0,197:61 chr1 19203997 . C G 160 . DP=13;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,6,6;MQ=60;FQ=-63 GT:PL:GQ 1/1:193,36,0:69 chr1 19204154 . G A 10.2 . DP=2;VDB=0.0135;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:41,6,0:8 chr1 19205672 . T G 71 . DP=24;VDB=0.0164;AF1=0.5;AC1=1;DP4=5,5,9,4;MQ=59;FQ=74;PV4=0.42,2e-11,0.2,1 GT:PL:GQ 0/1:101,0,201:99 chr1 19208145 . GG GGGTTGCCTG 214 . INDEL;DP=18;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,12,4;MQ=37;FQ=-82.5 GT:PL:GQ 1/1:255,48,0:93 chr1 19208944 . A G 88.5 . DP=5;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:121,12,0:21 chr1 19209543 . A G 61 . DP=13;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:94,33,0:63 chr1 19215834 . T C 162 . DP=96;VDB=0.0398;AF1=0.5;AC1=1;DP4=35,13,28,18;MQ=59;FQ=165;PV4=0.27,5.2e-31,0.037,0.12 GT:PL:GQ 0/1:192,0,255:99 chr1 19229050 . G A 106 . DP=34;VDB=0.0393;AF1=0.5;AC1=1;DP4=18,4,7,3;MQ=60;FQ=109;PV4=0.65,0.063,1,0.14 GT:PL:GQ 0/1:136,0,254:99 chr1 19243589 . A G 19.1 . DP=36;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,17,2,8;MQ=60;FQ=22;PV4=0.69,1e-12,1,1 GT:PL:GQ 0/1:49,0,255:52 chr1 19282293 . C A 3.01 . DP=9;VDB=0.0076;AF1=0.4997;AC1=1;DP4=2,5,1,1;MQ=60;FQ=4.77;PV4=1,0.35,1,1 GT:PL:GQ 0/1:30,0,150:28 chr1 19401405 . G A 154 . DP=83;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,17,20,25;MQ=59;FQ=157;PV4=0.65,3.8e-28,0.22,1 GT:PL:GQ 0/1:184,0,255:99 chr1 19403173 . C T 116 . DP=29;VDB=0.0014;AF1=0.5;AC1=1;DP4=16,2,11,0;MQ=60;FQ=119;PV4=0.51,0.23,1,1 GT:PL:GQ 0/1:146,0,236:99 chr1 19408294 . GCCCC GCCCCC 160 . INDEL;DP=125;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,41,23,31;MQ=60;FQ=163;PV4=0.45,1,1,1 GT:PL:GQ 0/1:198,0,213:99 chr1 19408380 . T C 51 . DP=44;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,21,0,21;MQ=59;FQ=54;PV4=1,8.8e-14,0.16,1 GT:PL:GQ 0/1:81,0,203:84 chr1 19411129 . A G 225 . DP=37;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,9,6,14;MQ=60;FQ=222;PV4=0.72,1,1,1 GT:PL:GQ 0/1:255,0,250:99 chr1 19413261 . T A 130 . DP=42;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,10,10,7;MQ=60;FQ=133;PV4=1,8.4e-08,1,1 GT:PL:GQ 0/1:160,0,255:99 chr1 19413420 . T G 8.64 . DP=9;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,2,1,2;MQ=60;FQ=11.3;PV4=1,0.0052,1,0.44 GT:PL:GQ 0/1:38,0,60:40 chr1 19415304 . C T 68 . DP=36;VDB=0.0216;AF1=0.5;AC1=1;DP4=15,4,15,2;MQ=59;FQ=71;PV4=0.66,1.3e-15,1,0.36 GT:PL:GQ 0/1:98,0,255:99 chr1 19420392 . G A 73 . DP=16;VDB=0.0118;AF1=0.5;AC1=1;DP4=5,0,8,1;MQ=58;FQ=75.4;PV4=1,8.2e-09,0.24,0.16 GT:PL:GQ 0/1:103,0,111:99 chr1 19426199 . G A 166 . DP=22;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,8,1,11;MQ=60;FQ=115;PV4=1,0.09,1,0.38 GT:PL:GQ 0/1:196,0,142:99 chr1 19447843 . C G 169 . DP=25;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,12,6,4;MQ=60;FQ=172;PV4=0.087,1,1,1 GT:PL:GQ 0/1:199,0,237:99 chr1 19448326 . C T 225 . DP=43;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,2,15,5;MQ=60;FQ=211;PV4=0.23,1,1,1 GT:PL:GQ 0/1:255,0,238:99 chr1 19474975 . T G 116 . DP=65;VDB=0.0365;AF1=0.5;AC1=1;DP4=31,10,14,8;MQ=60;FQ=119;PV4=0.38,9.5e-20,1,0.48 GT:PL:GQ 0/1:146,0,255:99 chr1 19483209 . A G 13.2 . DP=8;VDB=0.0143;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=16.1;PV4=1,2.2e-05,1,1 GT:PL:GQ 0/1:43,0,101:46 chr1 19486839 . T C 22 . DP=7;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=25;PV4=1,6.3e-06,1,0.1 GT:PL:GQ 0/1:52,0,84:55 chr1 19487656 . T C 225 . DP=41;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,17,8,10;MQ=59;FQ=225;PV4=0.19,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 19491857 . T C 225 . DP=91;VDB=0.0365;AF1=0.5;AC1=1;DP4=23,29,15,24;MQ=59;FQ=225;PV4=0.67,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 19499835 . G C 225 . DP=104;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,42,18,26;MQ=60;FQ=225;PV4=0.21,1,0.42,0.44 GT:PL:GQ 0/1:255,0,255:99 chr1 19500729 . G A 81 . DP=34;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,3,14,1;MQ=59;FQ=84;PV4=0.6,1.4e-13,1,0.33 GT:PL:GQ 0/1:111,0,253:99 chr1 19510394 . A G 115 . DP=77;VDB=0.0322;AF1=0.5;AC1=1;DP4=30,10,25,12;MQ=60;FQ=118;PV4=0.61,8.1e-33,0.15,1 GT:PL:GQ 0/1:145,0,255:99 chr1 19518659 . G A 44 . DP=9;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,2,5,1;MQ=60;FQ=44;PV4=0.23,0.00012,1,1 GT:PL:GQ 0/1:74,0,74:74 chr1 19519782 . C T 31 . DP=7;VDB=0.0001;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=21.8;PV4=1,0.00027,1,1 GT:PL:GQ 0/1:61,0,49:52 chr1 19519887 . G C 225 . DP=142;VDB=0.0345;AF1=0.5;AC1=1;DP4=49,27,39,25;MQ=60;FQ=225;PV4=0.73,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 19549343 . G C 159 . DP=60;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,22,8,23;MQ=60;FQ=162;PV4=0.77,1.6e-16,1,1 GT:PL:GQ 0/1:189,0,255:99 chr1 19554099 . T G 3.01 . DP=6;VDB=0.0177;AF1=0.4997;AC1=1;DP4=0,3,0,2;MQ=60;FQ=4.77;PV4=1,0.019,1,1 GT:PL:GQ 0/1:30,0,75:28 chr1 19557713 . G C 3.41 . DP=2;VDB=0.0171;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:32,6,0:4 chr1 19564650 . C G 166 . DP=71;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,18,11,18;MQ=60;FQ=169;PV4=0.22,1.3e-11,1,0.29 GT:PL:GQ 0/1:196,0,255:99 chr1 19565344 . C G 225 . DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,9,11,7;MQ=60;FQ=225;PV4=0.53,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 19566296 . T C 225 . DP=57;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,14,17,5;MQ=60;FQ=225;PV4=0.25,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 19568972 . A G 76 . DP=34;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,17,4,8;MQ=59;FQ=79;PV4=0.69,1e-15,0.09,0.063 GT:PL:GQ 0/1:106,0,255:99 chr1 19578192 . G A 30 . DP=3;VDB=0.0098;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:62,9,0:16 chr1 19582563 . G A 179 . DP=42;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,10,30;MQ=59;FQ=-147 GT:PL:GQ 1/1:212,120,0:99 chr1 19583400 . A G 117 . DP=17;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,15,2;MQ=60;FQ=-78 GT:PL:GQ 1/1:150,51,0:99 chr1 19584529 . G A 113 . DP=59;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,14,6,24;MQ=60;FQ=116;PV4=0.048,2.6e-21,0.18,1 GT:PL:GQ 0/1:143,0,255:99 chr1 19595137 . C T 222 . DP=47;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,39,6;MQ=60;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 19595892 . G A 139 . DP=21;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,3,17;MQ=60;FQ=-87 GT:PL:GQ 1/1:172,60,0:99 chr1 19596124 . C T 74.1 . DP=6;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:107,18,0:33 chr1 19596156 . G T 72 . DP=15;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:105,39,0:75 chr1 19597420 . G T 225 . DP=39;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,12,9,12;MQ=60;FQ=225;PV4=0.74,0.39,1,0.44 GT:PL:GQ 0/1:255,0,255:99 chr1 19600406 . C T 85 . DP=23;VDB=0.0384;AF1=0.5;AC1=1;DP4=5,8,7,3;MQ=54;FQ=88;PV4=0.21,8.9e-07,0.04,0.38 GT:PL:GQ 0/1:115,0,240:99 chr1 19609254 . T C 222 . DP=68;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,35,32;MQ=53;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr1 19609522 . G A 76 . DP=8;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,7;MQ=44;FQ=-51 GT:PL:GQ 1/1:109,24,0:45 chr1 19611241 . T C 190 . DP=65;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,15,50;MQ=60;FQ=-223 GT:PL:GQ 1/1:223,196,0:99 chr1 19612477 . C T 225 . DP=30;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,5,8,7;MQ=58;FQ=225;PV4=0.71,0.087,1,0.44 GT:PL:GQ 0/1:255,0,255:99 chr1 19650982 . C T 65 . DP=10;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:98,27,0:51 chr1 19651102 . A G 222 . DP=104;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,74,26;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 19651277 . G A 110 . DP=35;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,5,27;MQ=59;FQ=-123 GT:PL:GQ 1/1:143,96,0:99 chr1 19651300 . T C 83 . DP=19;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,16;MQ=60;FQ=-78 GT:PL:GQ 1/1:116,51,0:99 chr1 19651330 . C T 35.5 . DP=4;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:68,12,0:21 chr1 19652063 . G A 222 . DP=19;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,11;MQ=57;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr1 19652128 . GTT GT 140 . INDEL;DP=9;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,2,5;MQ=57;FQ=-55.5 GT:PL:GQ 1/1:180,21,0:39 chr1 19653256 . A G 13.9 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr1 19934634 . G A 91 . DP=54;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,14,16,11;MQ=60;FQ=94;PV4=0.27,2.2e-24,1,1 GT:PL:GQ 0/1:121,0,255:99 chr1 19934900 . G A 132 . DP=101;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,22,16,33;MQ=60;FQ=135;PV4=0.041,5e-30,1,1 GT:PL:GQ 0/1:162,0,255:99 chr1 19981699 . A G 61 . DP=22;VDB=0.0244;AF1=0.5;AC1=1;DP4=8,4,7,3;MQ=60;FQ=64;PV4=1,6.3e-06,1,1 GT:PL:GQ 0/1:91,0,209:94 chr1 19981791 . A G 197 . DP=46;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,33,10;MQ=59;FQ=-156 GT:PL:GQ 1/1:230,129,0:99 chr1 19992513 . C T 225 . DP=97;VDB=0.0399;AF1=0.5;AC1=1;DP4=24,23,17,31;MQ=60;FQ=225;PV4=0.15,0.0043,0.16,0.47 GT:PL:GQ 0/1:255,0,255:99 chr1 20005346 . A C 105 . DP=47;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,2,21,3;MQ=59;FQ=108;PV4=1,3.2e-16,0.18,1 GT:PL:GQ 0/1:135,0,227:99 chr1 20009737 . G A 157 . DP=39;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,4,16,8;MQ=60;FQ=160;PV4=1,6.3e-16,1,1 GT:PL:GQ 0/1:187,0,230:99 chr1 20020993 . A G 222 . DP=48;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,9,17;MQ=59;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 20027404 . G A 225 . DP=67;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,18,9,31;MQ=59;FQ=225;PV4=0.77,0.33,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 20027423 . T G 108 . DP=47;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,13,3,27;MQ=60;FQ=111;PV4=0.24,3.2e-18,0.23,1 GT:PL:GQ 0/1:138,0,234:99 chr1 20097941 . G T 103 . DP=17;VDB=0.0384;AF1=0.5;AC1=1;DP4=2,4,2,8;MQ=60;FQ=102;PV4=0.6,0.00033,1,0.43 GT:PL:GQ 0/1:133,0,131:99 chr1 20107018 . G A 225 . DP=51;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,9,19,8;MQ=60;FQ=225;PV4=0.57,0.07,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 20141125 . G A 225 . DP=57;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,19,10,13;MQ=60;FQ=225;PV4=1,0.13,1,0.34 GT:PL:GQ 0/1:255,0,255:99 chr1 20141528 . C T 222 . DP=48;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,10,34;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 20216860 . G A 222 . DP=68;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,49,17;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr1 20246876 . C T 142 . DP=14;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,1,8,1;MQ=60;FQ=85;PV4=1,0.43,1,1 GT:PL:GQ 0/1:172,0,112:99 chr1 20248646 . G A 13.2 . DP=7;VDB=0.0182;AF1=0.5;AC1=1;DP4=5,0,2,0;MQ=60;FQ=16.1;PV4=1,0.00048,1,1 GT:PL:GQ 0/1:43,0,124:46 chr1 20248651 . A G 11.3 . DP=8;VDB=0.0133;AF1=0.5;AC1=1;DP4=5,0,3,0;MQ=60;FQ=14.2;PV4=1,4.6e-09,1,0.32 GT:PL:GQ 0/1:41,0,120:43 chr1 20248709 . A G 161 . DP=37;VDB=0.0298;AF1=0.5;AC1=1;DP4=21,2,11,2;MQ=59;FQ=164;PV4=0.61,0.31,0.094,1 GT:PL:GQ 0/1:191,0,244:99 chr1 20249253 . Agagagggagagggagagggagagggag AGAGAGGgagagggagagggagagggagagggag 114 . INDEL;DP=40;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,10,1,4;MQ=58;FQ=117;PV4=1,0.12,0.0038,1 GT:PL:GQ 0/1:152,0,255:99 chr1 20304857 . G A 5.46 . DP=7;VDB=0.0206;AF1=0.4999;AC1=1;DP4=2,2,3,0;MQ=60;FQ=7.8;PV4=0.43,0.00098,1,1 GT:PL:GQ 0/1:34,0,113:34 chr1 20304926 . G A 118 . DP=14;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,4,5,2;MQ=58;FQ=117;PV4=0.59,1,1,0.37 GT:PL:GQ 0/1:148,0,147:99 chr1 20305065 . C T 117 . DP=15;VDB=0.0118;AF1=0.5;AC1=1;DP4=5,4,3,3;MQ=60;FQ=120;PV4=1,1,1,1 GT:PL:GQ 0/1:147,0,208:99 chr1 20395401 . C A 106 . DP=27;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,23,3;MQ=60;FQ=-105 GT:PL:GQ 1/1:139,78,0:99 chr1 20411234 . T A 70 . DP=8;VDB=0.0180;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=55.9;PV4=1,1,1,1 GT:PL:GQ 0/1:100,0,83:86 chr1 20411332 . C T 105 . DP=24;VDB=0.0164;AF1=0.5;AC1=1;DP4=11,3,5,5;MQ=60;FQ=108;PV4=0.2,7.2e-06,1,1 GT:PL:GQ 0/1:135,0,221:99 chr1 20442054 . T C 107 . DP=37;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,12,2,17;MQ=60;FQ=110;PV4=0.63,1.7e-12,1,1 GT:PL:GQ 0/1:137,0,237:99 chr1 20446170 . gttttt gtttt 45.5 . INDEL;DP=10;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-61.5 GT:PL:GQ 1/1:86,27,0:51 chr1 20637043 . C T 29 . DP=27;VDB=0.0025;AF1=0.5;AC1=1;DP4=14,0,13,0;MQ=60;FQ=32;PV4=1,2.9e-08,1,1 GT:PL:GQ 0/1:59,0,168:62 chr1 20637374 . T C 95 . DP=20;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,20;MQ=59;FQ=-87 GT:PL:GQ 1/1:128,60,0:99 chr1 20649814 . T C 78 . DP=58;VDB=0.0216;AF1=0.5;AC1=1;DP4=20,10,21,5;MQ=60;FQ=81;PV4=0.36,1.5e-24,1,1 GT:PL:GQ 0/1:108,0,255:99 chr1 20657352 . T C 45 . DP=48;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,10,4,11;MQ=60;FQ=48;PV4=0.1,1.6e-18,1,0.3 GT:PL:GQ 0/1:75,0,255:78 chr1 20659319 . A G 147 . DP=83;VDB=0.0393;AF1=0.5;AC1=1;DP4=21,16,11,30;MQ=60;FQ=150;PV4=0.011,1.6e-20,0.17,0.44 GT:PL:GQ 0/1:177,0,255:99 chr1 20664061 . A G 29 . DP=16;VDB=0.0004;AF1=0.5;AC1=1;DP4=7,0,9,0;MQ=60;FQ=32;PV4=1,1.8e-13,1,1 GT:PL:GQ 0/1:59,0,135:62 chr1 20664128 . T C 84 . DP=47;VDB=0.0400;AF1=0.5;AC1=1;DP4=18,10,13,6;MQ=60;FQ=87;PV4=1,8.9e-22,1,1 GT:PL:GQ 0/1:114,0,255:99 chr1 20671833 . C A 141 . DP=9;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:174,24,0:45 chr1 20671961 . G A 155 . DP=21;VDB=0.0393;AF1=0.5;AC1=1;DP4=3,9,4,5;MQ=60;FQ=158;PV4=0.4,0.09,1,0.44 GT:PL:GQ 0/1:185,0,231:99 chr1 20672101 . C T 30 . DP=10;VDB=0.0332;AF1=0.5;AC1=1;DP4=1,5,1,3;MQ=60;FQ=33;PV4=1,0.0015,1,0.46 GT:PL:GQ 0/1:60,0,143:63 chr1 20677533 . C T 80 . DP=8;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=60;FQ=48;PV4=1,0.31,1,1 GT:PL:GQ 0/1:110,0,75:78 chr1 20678551 . A G 153 . DP=119;VDB=0.0398;AF1=0.5;AC1=1;DP4=38,21,25,23;MQ=60;FQ=156;PV4=0.24,3.6e-29,0.13,1 GT:PL:GQ 0/1:183,0,255:99 chr1 20680760 . A G 182 . DP=20;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,9,10;MQ=60;FQ=-84 GT:PL:GQ 1/1:215,57,0:99 chr1 20827216 . C T 157 . DP=44;VDB=0.0398;AF1=0.5;AC1=1;DP4=11,5,22,6;MQ=59;FQ=160;PV4=0.49,2.4e-08,0.23,1 GT:PL:GQ 0/1:187,0,233:99 chr1 20931601 . TATTCATTCattcattcat TATTCATTCATTCattcattcat 217 . INDEL;DP=89;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,23,4,18;MQ=59;FQ=217;PV4=1,1,0.22,0.086 GT:PL:GQ 0/1:255,0,255:99 chr1 20940258 . T A 222 . DP=19;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,17,2;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr1 20940463 . T C 54 . DP=10;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,3,0,7;MQ=60;FQ=47.5;PV4=1,4.8e-06,1,0.43 GT:PL:GQ 0/1:84,0,75:77 chr1 20944889 . G A 160 . DP=40;VDB=0.0140;AF1=0.5;AC1=1;DP4=17,6,16,1;MQ=59;FQ=163;PV4=0.21,0.37,1,1 GT:PL:GQ 0/1:190,0,255:99 chr1 20944909 . G A 225 . DP=61;VDB=0.0398;AF1=0.5;AC1=1;DP4=19,12,18,12;MQ=59;FQ=225;PV4=1,0.045,0.49,0.052 GT:PL:GQ 0/1:255,0,255:99 chr1 20944922 . C T 225 . DP=65;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,15,17,14;MQ=59;FQ=225;PV4=1,0.0098,1,0.23 GT:PL:GQ 0/1:255,0,255:99 chr1 20945055 . C T 144 . DP=56;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,16,15,16;MQ=60;FQ=147;PV4=0.26,2.1e-16,1,1 GT:PL:GQ 0/1:174,0,255:99 chr1 20964328 . A G 70 . DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:102,9,0:16 chr1 20971937 . G A 68 . DP=5;VDB=0.0236;AF1=0.502;AC1=1;DP4=1,0,4,0;MQ=56;FQ=-6.96;PV4=1,0.25,1,1 GT:PL:GQ 0/1:98,0,21:24 chr1 20972048 . G A 222 . DP=36;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,21,12;MQ=56;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 20972111 . G A 160 . DP=48;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,12,5,13;MQ=56;FQ=163;PV4=0.07,0.0012,0.0029,1 GT:PL:GQ 0/1:190,0,255:99 chr1 20977000 . A C 220 . DP=41;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,30,10;MQ=59;FQ=-147 GT:PL:GQ 1/1:253,120,0:99 chr1 20977221 . A T 47.3 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:80,15,0:27 chr1 20978832 . T C 60 . DP=19;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,18,1;MQ=60;FQ=-84 GT:PL:GQ 1/1:93,57,0:99 chr1 20981806 . G A 31.5 . DP=5;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:64,12,0:21 chr1 20982151 . G A 105 . DP=78;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,16,18,21;MQ=60;FQ=108;PV4=0.64,4.3e-31,1,1 GT:PL:GQ 0/1:135,0,255:99 chr1 20982631 . G A 225 . DP=52;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,10,16,8;MQ=60;FQ=225;PV4=0.77,0.15,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 20987873 . G C 212 . DP=38;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,29;MQ=59;FQ=-135 GT:PL:GQ 1/1:245,108,0:99 chr1 20991016 . C A 6.2 . DP=5;VDB=0.0060;AF1=0.4999;AC1=1;DP4=2,0,3,0;MQ=60;FQ=8.54;PV4=1,0.014,1,1 GT:PL:GQ 0/1:35,0,50:36 chr1 20992819 . G C 104 . DP=34;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,13,2,14;MQ=58;FQ=107;PV4=1,5.5e-05,1,1 GT:PL:GQ 0/1:134,0,205:99 chr1 21011273 . TCCC TCCCC 14.6 . INDEL;DP=3;VDB=0.0040;AF1=0.502;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-13.7;PV4=1,1,1,0.42 GT:PL:GQ 0/1:52,0,21:24 chr1 21011346 . A G 94 . DP=22;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,2,7,3;MQ=60;FQ=97;PV4=1,3e-05,1,0.27 GT:PL:GQ 0/1:124,0,159:99 chr1 21011622 . CGACAGA CGACAGACAGA 217 . INDEL;DP=92;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,25,15,26;MQ=58;FQ=217;PV4=1,1,0.0063,0.26 GT:PL:GQ 0/1:255,0,255:99 chr1 21024901 . C T 167 . DP=29;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,5,4,6;MQ=60;FQ=170;PV4=0.11,1,1,1 GT:PL:GQ 0/1:197,0,255:99 chr1 21030916 . G A 225 . DP=53;VDB=0.0118;AF1=0.5;AC1=1;DP4=21,2,22,6;MQ=60;FQ=191;PV4=0.27,1,1,1 GT:PL:GQ 0/1:255,0,218:99 chr1 21031046 . C T 225 . DP=108;VDB=0.0380;AF1=0.5;AC1=1;DP4=30,31,21,22;MQ=60;FQ=225;PV4=1,0.067,0.12,1 GT:PL:GQ 0/1:255,0,255:99 chr1 21040079 . C A 57 . DP=22;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,10,3,4;MQ=60;FQ=60;PV4=1,6e-07,1,1 GT:PL:GQ 0/1:87,0,255:90 chr1 21040151 . G A 28 . DP=8;VDB=0.0049;AF1=0.5;AC1=1;DP4=0,4,1,3;MQ=60;FQ=31;PV4=1,0.00018,1,0.42 GT:PL:GQ 0/1:58,0,101:61 chr1 21042094 . G A 187 . DP=28;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,5,4,8;MQ=60;FQ=190;PV4=0.12,1,1,1 GT:PL:GQ 0/1:217,0,248:99 chr1 21043913 . T C 54 . DP=23;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,2,7,1;MQ=60;FQ=57;PV4=1,0.00092,1,1 GT:PL:GQ 0/1:84,0,185:87 chr1 21043926 . T C 55 . DP=30;VDB=0.0359;AF1=0.5;AC1=1;DP4=15,3,11,1;MQ=60;FQ=58;PV4=0.63,3.5e-07,1,0.37 GT:PL:GQ 0/1:85,0,226:88 chr1 21044052 . T C 182 . DP=63;VDB=0.0384;AF1=0.5;AC1=1;DP4=16,14,17,13;MQ=59;FQ=185;PV4=1,3.1e-07,0.24,1 GT:PL:GQ 0/1:212,0,255:99 chr1 21044161 . A G 9.52 . DP=29;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,15,0,8;MQ=59;FQ=12.3;PV4=1,2.3e-06,1,1 GT:PL:GQ 0/1:39,0,201:41 chr1 21049518 . C T 80 . DP=9;VDB=0.0143;AF1=0.5;AC1=1;DP4=0,5,2,2;MQ=60;FQ=78.3;PV4=0.17,1,1,1 GT:PL:GQ 0/1:110,0,107:99 chr1 21050958 . C T 150 . DP=62;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,25,10,17;MQ=60;FQ=153;PV4=0.59,5e-16,0.13,0.47 GT:PL:GQ 0/1:180,0,255:99 chr1 21053506 . G A 225 . DP=44;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,8,14,14;MQ=59;FQ=188;PV4=0.75,0.15,1,0.24 GT:PL:GQ 0/1:255,0,215:99 chr1 21053887 . C T 111 . DP=41;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,2,20,2;MQ=59;FQ=114;PV4=1,3.3e-13,1,1 GT:PL:GQ 0/1:141,0,214:99 chr1 21054371 . C T 152 . DP=84;VDB=0.0400;AF1=0.5;AC1=1;DP4=19,13,26,23;MQ=60;FQ=155;PV4=0.65,3e-28,0.21,0.083 GT:PL:GQ 0/1:182,0,255:99 chr1 21073993 . TA TAA 126 . INDEL;DP=30;VDB=0.0244;AF1=0.5;AC1=1;DP4=15,2,13,0;MQ=60;FQ=129;PV4=0.49,1,1,1 GT:PL:GQ 0/1:164,0,199:99 chr1 21091861 . G T 90 . DP=46;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,5,21,5;MQ=60;FQ=93;PV4=0.73,2.1e-21,1,1 GT:PL:GQ 0/1:120,0,255:99 chr1 21167404 . A G 222 . DP=40;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,15;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 21175855 . C A 128 . DP=7;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:161,21,0:39 chr1 21179969 . G A 219 . DP=15;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,2;MQ=60;FQ=-69 GT:PL:GQ 1/1:252,42,0:81 chr1 21180181 . C T 167 . DP=22;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,18;MQ=59;FQ=-93 GT:PL:GQ 1/1:200,66,0:99 chr1 21180250 . G A 57.5 . DP=4;VDB=0.0126;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:90,12,0:21 chr1 21188703 . A T 129 . DP=136;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,44,39;MQ=59;FQ=-277 GT:PL:GQ 1/1:162,250,0:99 chr1 21327637 . C T 199 . DP=63;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,46,13;MQ=60;FQ=-205 GT:PL:GQ 1/1:232,178,0:99 chr1 21377314 . C T 22.2 . DP=7;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:55,18,0:32 chr1 21554319 . A G 4 . DP=5;VDB=0.0070;AF1=0.6241;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-23;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,4:10 chr1 21560316 . C G 5.29 . DP=2;VDB=0.0169;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:35,6,0:6 chr1 21573855 . G A 107 . DP=33;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,11,2,16;MQ=60;FQ=110;PV4=0.37,5.7e-14,1,0.16 GT:PL:GQ 0/1:137,0,252:99 chr1 21751142 . A G 14.2 . DP=19;VDB=0.0042;AF1=0.5001;AC1=1;DP4=7,0,12,0;MQ=19;FQ=7.46;PV4=1,8e-12,1,1 GT:PL:GQ 0/1:44,0,34:37 chr1 21751214 . G A 225 . DP=96;VDB=0.0345;AF1=0.5;AC1=1;DP4=20,15,39,21;MQ=35;FQ=167;PV4=0.51,0.18,1,0.26 GT:PL:GQ 0/1:255,0,194:99 chr1 21752682 . G A 7.8 . DP=31;VDB=0.0081;AF1=0.5;AC1=1;DP4=22,0,8,0;MQ=25;FQ=10.4;PV4=1,2.1e-19,1,1 GT:PL:GQ 0/1:37,0,75:39 chr1 21752766 . A G 68 . DP=48;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,22,5,11;MQ=23;FQ=71;PV4=1,2.7e-13,1,1 GT:PL:GQ 0/1:98,0,164:99 chr1 21752782 . T G 50 . DP=50;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,29,3,13;MQ=22;FQ=53;PV4=0.67,1.1e-10,1,1 GT:PL:GQ 0/1:80,0,124:83 chr1 21753562 . A C 107 . DP=8;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,5;MQ=34;FQ=-51 GT:PL:GQ 1/1:140,24,0:45 chr1 21754996 . C T 121 . DP=9;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,6;MQ=37;FQ=-51 GT:PL:GQ 1/1:154,24,0:45 chr1 21755055 . C A 30 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,0,3;MQ=27;FQ=-36 GT:PL:GQ 1/1:62,9,0:16 chr1 21755539 . C A 9.31 . DP=2;VDB=0.0135;AF1=1;AC1=2;DP4=0,0,2,0;MQ=22;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr1 21755756 . G C 206 . DP=24;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,8,13;MQ=42;FQ=-90 GT:PL:GQ 1/1:239,63,0:99 chr1 21755867 . A G,T 157 . DP=14;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,7,7;MQ=27;FQ=-66 GT:PL:GQ 1/1:190,39,0,169,7,166:75 chr1 21755906 . G A 177 . DP=15;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,4,9;MQ=35;FQ=-66 GT:PL:GQ 1/1:210,39,0:75 chr1 21756008 . G T 141 . DP=7;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,5;MQ=49;FQ=-48 GT:PL:GQ 1/1:174,21,0:39 chr1 21795388 . A G 222 . DP=25;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,11,13;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 21799489 . T C 152 . DP=11;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:185,30,0:57 chr1 21799823 . A G 39.5 . DP=5;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:72,12,0:21 chr1 21800185 . T G 34.3 . DP=5;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:67,15,0:27 chr1 21801346 . G A 32.5 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:65,12,0:21 chr1 21804815 . T G 56 . DP=9;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:89,24,0:45 chr1 21805730 . A G 143 . DP=8;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:176,24,0:45 chr1 21805780 . A G 20 . DP=19;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,5,4,1;MQ=60;FQ=23;PV4=0.61,1.1e-09,1,1 GT:PL:GQ 0/1:50,0,255:53 chr1 21808159 . G A 99 . DP=57;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,20,8,14;MQ=28;FQ=102;PV4=0.78,2.6e-10,1,1 GT:PL:GQ 0/1:129,0,207:99 chr1 21808207 . A C 18.1 . DP=25;VDB=0.0011;AF1=0.5;AC1=1;DP4=1,15,0,9;MQ=20;FQ=21;PV4=1,6.7e-13,1,1 GT:PL:GQ 0/1:48,0,85:51 chr1 21808223 . T C 25 . DP=21;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,12,0,9;MQ=20;FQ=27.7;PV4=1,2.4e-07,1,0.16 GT:PL:GQ 0/1:55,0,66:58 chr1 21809750 . T C 81 . DP=13;VDB=0.0373;AF1=0.5;AC1=1;DP4=1,1,0,11;MQ=32;FQ=11.3;PV4=0.15,0.21,0,0.26 GT:PL:GQ 0/1:111,0,38:41 chr1 21889506 . C T 23 . DP=11;VDB=0.0003;AF1=0.5;AC1=1;DP4=4,0,7,0;MQ=60;FQ=26;PV4=1,3e-07,1,0.21 GT:PL:GQ 0/1:53,0,89:56 chr1 21889635 . T C 222 . DP=53;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,29;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 21889784 . CGGGGG CGGGG 33.5 . INDEL;DP=18;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,9,2,6;MQ=60;FQ=35.7;PV4=0.56,0.36,1,0.36 GT:PL:GQ 0/1:71,0,78:73 chr1 21890464 . A G 47.1 . DP=7;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:80,21,0:39 chr1 21900420 . A G 153 . DP=28;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,5,22;MQ=60;FQ=-108 GT:PL:GQ 1/1:186,81,0:99 chr1 21900459 . A C 21 . DP=8;VDB=0.0004;AF1=0.5;AC1=1;DP4=1,1,0,6;MQ=60;FQ=21;PV4=0.25,1e-05,1,0.13 GT:PL:GQ 0/1:51,0,51:51 chr1 21929260 . A G 170 . DP=64;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,33,27;MQ=60;FQ=-208 GT:PL:GQ 1/1:203,181,0:99 chr1 21930542 . C T 100 . DP=6;VDB=0.0001;AF1=0.5013;AC1=1;DP4=0,1,1,4;MQ=60;FQ=-5.45;PV4=1,0.17,1,0.21 GT:PL:GQ 0/1:130,0,23:26 chr1 21932530 . C A,G 152 . DP=18;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,13,4;MQ=59;FQ=-75 GT:PL:GQ 1/1:185,48,0,184,35,181:93 chr1 21934667 . G A 222 . DP=45;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,20;MQ=59;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 21935433 . G T 100 . DP=29;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,8,4,10;MQ=59;FQ=103;PV4=0.45,1.4e-14,1,0.21 GT:PL:GQ 0/1:130,0,255:99 chr1 21935492 . C T 44 . DP=21;VDB=0.0343;AF1=0.5;AC1=1;DP4=2,11,0,7;MQ=60;FQ=47;PV4=0.52,0.0011,1,0.37 GT:PL:GQ 0/1:74,0,187:77 chr1 21938375 . T G 19.8 . DP=4;VDB=0.0159;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:51,6,0:10 chr1 21939493 . G C 193 . DP=30;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,25,5;MQ=59;FQ=-117 GT:PL:GQ 1/1:226,90,0:99 chr1 21940555 . C T 222 . DP=21;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,5,15;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr1 21944352 . A G 72 . DP=40;VDB=0.0298;AF1=0.5;AC1=1;DP4=22,1,15,2;MQ=58;FQ=75;PV4=0.56,4.7e-15,0.2,1 GT:PL:GQ 0/1:102,0,212:99 chr1 21946415 . G A 112 . DP=28;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,25,2;MQ=60;FQ=-108 GT:PL:GQ 1/1:145,81,0:99 chr1 21953304 . G A 225 . DP=135;VDB=0.0365;AF1=0.5;AC1=1;DP4=53,23,38,15;MQ=60;FQ=225;PV4=0.85,0.26,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 21953436 . A G 222 . DP=133;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,33,95;MQ=60;FQ=-282;PV4=1,0.43,1,0.24 GT:PL:GQ 1/1:255,255,0:99 chr1 21961091 . C T 3.01 . DP=4;VDB=0.0163;AF1=0.4998;AC1=1;DP4=2,0,2,0;MQ=60;FQ=4.77;PV4=1,0.00077,1,0.45 GT:PL:GQ 0/1:30,0,63:28 chr1 21961339 . A T 222 . DP=88;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,28,57;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 22013561 . C A 15.6 . DP=5;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:48,12,0:20 chr1 22013771 . G A 94 . DP=57;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,22,9,14;MQ=60;FQ=97;PV4=0.58,3.8e-24,1,1 GT:PL:GQ 0/1:124,0,255:99 chr1 22032570 . T G 65 . DP=42;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,0,21,0;MQ=60;FQ=68;PV4=1,1.4e-09,1,1 GT:PL:GQ 0/1:95,0,166:98 chr1 22050649 . C A 35 . DP=54;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,30,1,19;MQ=60;FQ=38;PV4=1,7e-25,1,0.28 GT:PL:GQ 0/1:65,0,248:68 chr1 22063149 . G A 225 . DP=29;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,8,4,13;MQ=60;FQ=200;PV4=0.68,1,1,1 GT:PL:GQ 0/1:255,0,227:99 chr1 22084145 . T C 225 . DP=71;VDB=0.0244;AF1=0.5;AC1=1;DP4=23,8,27,11;MQ=60;FQ=225;PV4=0.79,0.061,1,0.47 GT:PL:GQ 0/1:255,0,255:99 chr1 22139141 . C T 56 . DP=15;VDB=0.0393;AF1=0.5;AC1=1;DP4=2,6,1,6;MQ=58;FQ=59;PV4=1,4.5e-05,0.15,0.097 GT:PL:GQ 0/1:86,0,183:89 chr1 22141206 . A C 169 . DP=27;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,12,15;MQ=59;FQ=-108 GT:PL:GQ 1/1:202,81,0:99 chr1 22149935 . T C 208 . DP=49;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,31,18;MQ=60;FQ=-175 GT:PL:GQ 1/1:241,148,0:99 chr1 22150257 . C T 25 . DP=15;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,6,0,8;MQ=60;FQ=28;PV4=1,2.7e-06,1,0.12 GT:PL:GQ 0/1:55,0,111:58 chr1 22154845 . A G 225 . DP=97;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,39,13,23;MQ=60;FQ=225;PV4=0.66,1,1,0.38 GT:PL:GQ 0/1:255,0,255:99 chr1 22157689 . G A 225 . DP=101;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,26,22,25;MQ=60;FQ=225;PV4=1,0.07,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 22158363 . G A 44 . DP=8;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,1,2,3;MQ=60;FQ=26;PV4=1,0.0019,1,1 GT:PL:GQ 0/1:74,0,53:56 chr1 22160148 . C T 71 . DP=9;VDB=0.0022;AF1=0.5;AC1=1;DP4=0,5,1,3;MQ=60;FQ=73.2;PV4=0.44,0.49,1,0.4 GT:PL:GQ 0/1:101,0,108:99 chr1 22168216 . C T 30 . DP=15;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,7,0,6;MQ=60;FQ=33;PV4=1,0.00017,1,1 GT:PL:GQ 0/1:60,0,130:63 chr1 22174600 . A G 157 . DP=20;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,4,15;MQ=58;FQ=-84 GT:PL:GQ 1/1:190,57,0:99 chr1 22177119 . A G 38.8 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:70,6,0:10 chr1 22179673 . T C 175 . DP=18;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,16;MQ=59;FQ=-75 GT:PL:GQ 1/1:208,48,0:93 chr1 22180548 . T C 94 . DP=46;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,13,8,11;MQ=59;FQ=97;PV4=0.76,1.5e-14,0.12,0.49 GT:PL:GQ 0/1:124,0,255:99 chr1 22183471 . A C 122 . DP=52;VDB=0.0298;AF1=0.5;AC1=1;DP4=19,11,12,7;MQ=60;FQ=125;PV4=1,7.1e-12,1,1 GT:PL:GQ 0/1:152,0,255:99 chr1 22183739 . A G 119 . DP=96;VDB=0.0392;AF1=0.5;AC1=1;DP4=27,19,24,22;MQ=59;FQ=122;PV4=0.68,3.5e-46,1,1 GT:PL:GQ 0/1:149,0,255:99 chr1 22186234 . A G 222 . DP=25;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,12,12;MQ=59;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 22191454 . G A 222 . DP=31;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,7,23;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 22199245 . C T 142 . DP=25;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,5,6,8;MQ=59;FQ=145;PV4=0.7,0.00075,1,1 GT:PL:GQ 0/1:172,0,199:99 chr1 22199821 . G A 116 . DP=29;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,21,6;MQ=60;FQ=-108 GT:PL:GQ 1/1:149,81,0:99 chr1 22200067 . A G 32 . DP=8;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,2,1,3;MQ=60;FQ=35;PV4=1,0.00019,1,0.1 GT:PL:GQ 0/1:62,0,85:65 chr1 22200082 . T C 115 . DP=5;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:148,15,0:27 chr1 22201331 . C T 213 . DP=33;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,13,5,10;MQ=60;FQ=216;PV4=0.7,0.14,1,0.44 GT:PL:GQ 0/1:243,0,255:99 chr1 22202109 . C T 90 . DP=17;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,12,2;MQ=60;FQ=-69 GT:PL:GQ 1/1:123,42,0:81 chr1 22205466 . T C 33 . DP=12;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:66,24,0:44 chr1 22206649 . T C 219 . DP=50;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,34,15;MQ=60;FQ=-175 GT:PL:GQ 1/1:252,148,0:99 chr1 22206942 . G A 222 . DP=84;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,36,43;MQ=60;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr1 22207235 . T C 222 . DP=21;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,2,17;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr1 22207804 . ACCCAGGGTGGCAGCCCAGG ACCCAGG 112 . INDEL;DP=14;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,2;MQ=29;FQ=-55.5 GT:PL:GQ 1/1:152,21,0:39 chr1 22208030 . C T 42 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:74,9,0:16 chr1 22211217 . G A 108 . DP=52;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,6,19,2;MQ=60;FQ=111;PV4=0.26,0.00016,1,1 GT:PL:GQ 0/1:138,0,255:99 chr1 22211222 . T C 215 . DP=51;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,40,9;MQ=60;FQ=-175 GT:PL:GQ 1/1:248,148,0:99 chr1 22214127 . A G 172 . DP=35;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,6,11,11;MQ=60;FQ=175;PV4=1,1.6e-11,1,1 GT:PL:GQ 0/1:202,0,214:99 chr1 22215088 . T C 66 . DP=11;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:99,33,0:63 chr1 22216279 . C T 104 . DP=13;VDB=0.0025;AF1=0.5;AC1=1;DP4=5,0,8,0;MQ=60;FQ=84;PV4=1,0.1,1,0.38 GT:PL:GQ 0/1:134,0,111:99 chr1 22216574 . C A 106 . DP=38;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,12,5,13;MQ=60;FQ=109;PV4=0.73,6.1e-13,1,1 GT:PL:GQ 0/1:136,0,255:99 chr1 22216604 . C G 108 . DP=27;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,11,4,8;MQ=59;FQ=111;PV4=1,2.5e-11,0.14,1 GT:PL:GQ 0/1:138,0,255:99 chr1 22217108 . G A 166 . DP=57;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,24,28;MQ=60;FQ=-184 GT:PL:GQ 1/1:199,157,0:99 chr1 22304428 . C G 7.59 . DP=34;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,2,0;MQ=32;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr1 22307340 . C T 42 . DP=8;VDB=0.0006;AF1=0.5;AC1=1;DP4=2,0,6,0;MQ=39;FQ=15.1;PV4=1,0.11,0,0.49 GT:PL:GQ 0/1:72,0,42:45 chr1 22307358 . C G 55 . DP=18;VDB=0.0014;AF1=0.5;AC1=1;DP4=7,0,11,0;MQ=48;FQ=58;PV4=1,6.8e-13,4.8e-05,1 GT:PL:GQ 0/1:85,0,128:88 chr1 22307538 . C T 192 . DP=43;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,8,30;MQ=56;FQ=-141 GT:PL:GQ 1/1:225,114,0:99 chr1 22310139 . T G 85 . DP=24;VDB=0.0190;AF1=0.5;AC1=1;DP4=8,4,9,3;MQ=47;FQ=88;PV4=1,1.7e-05,1,0.39 GT:PL:GQ 0/1:115,0,200:99 chr1 22310145 . C T 108 . DP=25;VDB=0.0190;AF1=0.5;AC1=1;DP4=9,4,9,3;MQ=46;FQ=111;PV4=1,7.5e-08,1,1 GT:PL:GQ 0/1:138,0,211:99 chr1 22310262 . G C 134 . DP=41;VDB=0.0400;AF1=1;AC1=2;DP4=0,1,17,20;MQ=40;FQ=-109;PV4=1,1.4e-05,1,0.22 GT:PL:GQ 1/1:167,82,0:99 chr1 22310662 . G T 108 . DP=103;VDB=0.0400;AF1=0.5;AC1=1;DP4=26,42,14,18;MQ=59;FQ=111;PV4=0.66,4e-27,0.11,1 GT:PL:GQ 0/1:138,0,255:99 chr1 22310674 . C T 105 . DP=91;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,38,10,17;MQ=59;FQ=108;PV4=1,4.7e-19,0.011,1 GT:PL:GQ 0/1:135,0,255:99 chr1 22310725 . G C 69 . DP=64;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,31,4,20;MQ=58;FQ=72;PV4=1,4e-20,0.026,0.057 GT:PL:GQ 0/1:99,0,255:99 chr1 22310811 . G A 17.1 . DP=5;VDB=0.0192;AF1=0.5;AC1=1;DP4=0,3,0,2;MQ=60;FQ=20.1;PV4=1,0.11,1,0.31 GT:PL:GQ 0/1:47,0,83:50 chr1 22313103 . C G 119 . DP=56;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,14,12,11;MQ=52;FQ=122;PV4=0.79,4.5e-17,0.37,1 GT:PL:GQ 0/1:149,0,255:99 chr1 22313161 . T C 222 . DP=40;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,9,27;MQ=47;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 22313197 . C A 59 . DP=20;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,8,0,12;MQ=42;FQ=62;PV4=1,2.8e-08,0.3,1 GT:PL:GQ 0/1:89,0,113:92 chr1 22315662 . C T 73 . DP=37;VDB=0.0081;AF1=0.5;AC1=1;DP4=17,4,15,0;MQ=32;FQ=76;PV4=0.12,1,0.082,1 GT:PL:GQ 0/1:103,0,198:99 chr1 22315710 . G A 108 . DP=42;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,13,11,6;MQ=29;FQ=111;PV4=0.35,1,0.089,1 GT:PL:GQ 0/1:138,0,213:99 chr1 22315738 . C T 98 . DP=27;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,3,10;MQ=24;FQ=-66 GT:PL:GQ 1/1:131,39,0:75 chr1 22329414 . G A 71.1 . DP=7;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:104,21,0:39 chr1 22333595 . G A 67.1 . DP=8;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,7;MQ=31;FQ=-48 GT:PL:GQ 1/1:100,21,0:39 chr1 22336277 . C G 188 . DP=22;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,11,11;MQ=56;FQ=-93 GT:PL:GQ 1/1:221,66,0:99 chr1 22336371 . C A 70 . DP=12;VDB=0.0244;AF1=0.5003;AC1=1;DP4=2,1,1,8;MQ=46;FQ=4.77;PV4=0.13,0.018,1,0.18 GT:PL:GQ 0/1:100,0,30:33 chr1 22408106 . G A 132 . DP=73;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,46,24;MQ=60;FQ=-238 GT:PL:GQ 1/1:165,211,0:99 chr1 22447645 . CTG CTGTG 158 . INDEL;DP=7;VDB=0.0006;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=38.5;PV4=1,1,1,0.35 GT:PL:GQ 0/1:196,0,73:76 chr1 22453842 . T C 132 . DP=52;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,6,19,7;MQ=59;FQ=135;PV4=1,1e-21,1,0.46 GT:PL:GQ 0/1:162,0,255:99 chr1 22453975 . C G 151 . DP=50;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,19,8,15;MQ=60;FQ=154;PV4=0.76,2.9e-13,1,1 GT:PL:GQ 0/1:181,0,255:99 chr1 22454001 . T C 225 . DP=47;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,20,5,18;MQ=60;FQ=225;PV4=0.72,1,1,0.46 GT:PL:GQ 0/1:255,0,255:99 chr1 22832743 . A T 67 . DP=19;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,15;MQ=57;FQ=-75 GT:PL:GQ 1/1:100,48,0:93 chr1 22835677 . A G 222 . DP=54;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,47;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr1 22838560 . CAAGAAGAAGAAGAAGA CAAGAAGAAGAAGA 58.5 . INDEL;DP=9;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,4,1,1;MQ=60;FQ=61.5;PV4=1,9.2e-07,1,1 GT:PL:GQ 0/1:96,0,255:99 chr1 22846709 . G A 222 . DP=59;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,19,39;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 22849003 . A C 115 . DP=12;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,2,7;MQ=60;FQ=-54 GT:PL:GQ 1/1:148,27,0:51 chr1 22849009 . C G 43 . DP=8;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,3,2,3;MQ=60;FQ=45;PV4=0.46,0.0001,1,0.21 GT:PL:GQ 0/1:73,0,79:75 chr1 22852715 . G C 171 . DP=41;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,20,20;MQ=60;FQ=-147 GT:PL:GQ 1/1:204,120,0:99 chr1 22925292 . C G 182 . DP=58;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,43,12;MQ=60;FQ=-193 GT:PL:GQ 1/1:215,166,0:99 chr1 23045943 . A G 225 . DP=41;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,6,10,7;MQ=58;FQ=225;PV4=0.5,0.072,0.2,0.09 GT:PL:GQ 0/1:255,0,255:99 chr1 23101688 . T G 92 . DP=20;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,6,4,2;MQ=60;FQ=95;PV4=1,1,1,1 GT:PL:GQ 0/1:122,0,255:99 chr1 23107832 . A G 21 . DP=10;VDB=0.0003;AF1=0.5;AC1=1;DP4=2,0,2,1;MQ=55;FQ=15.5;PV4=1,0.094,0.25,1 GT:PL:GQ 0/1:51,0,43:45 chr1 23191746 . G T 225 . DP=45;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,18,4,19;MQ=60;FQ=223;PV4=1,0.041,1,1 GT:PL:GQ 0/1:255,0,251:99 chr1 23216712 . T C 216 . DP=23;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,15,8;MQ=60;FQ=-96 GT:PL:GQ 1/1:249,69,0:99 chr1 23219187 . C T 28.1 . DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-48 GT:PL:GQ 1/1:61,21,0:38 chr1 23219493 . T C 222 . DP=99;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,52,44;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 23223116 . C T 200 . DP=48;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,4,41;MQ=59;FQ=-162 GT:PL:GQ 1/1:233,135,0:99 chr1 23232400 . C T 77.5 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:110,12,0:21 chr1 23236826 . C T 222 . DP=23;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,19,4;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr1 23280424 . G T 142 . DP=27;VDB=0.0393;AF1=0.5;AC1=1;DP4=3,4,7,12;MQ=59;FQ=107;PV4=1,3.8e-07,0.28,1 GT:PL:GQ 0/1:172,0,134:99 chr1 23281712 . C A 47 . DP=17;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,3,5,0;MQ=59;FQ=50;PV4=0.51,0.057,1,1 GT:PL:GQ 0/1:77,0,230:80 chr1 23289568 . T C 222 . DP=23;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,15,7;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 23291582 . G A 61.1 . DP=6;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:94,18,0:33 chr1 23342193 . C G 29 . DP=5;VDB=0.0059;AF1=0.5006;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-3.53;PV4=1,0.0019,1,0.26 GT:PL:GQ 0/1:59,0,26:29 chr1 23342362 . A G 222 . DP=51;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,34;MQ=59;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 23380198 . A G 83 . DP=16;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,15,0;MQ=60;FQ=-72 GT:PL:GQ 1/1:116,45,0:87 chr1 23385826 . CTT C 217 . INDEL;DP=31;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,12,3,9;MQ=57;FQ=217;PV4=1,6.9e-16,0.36,0.49 GT:PL:GQ 0/1:255,0,255:99 chr1 23399932 . C T 173 . DP=38;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,33;MQ=60;FQ=-141 GT:PL:GQ 1/1:206,114,0:99 chr1 23405794 . A C 69.1 . DP=7;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:102,21,0:39 chr1 23409538 . G A 29 . DP=12;VDB=0.0001;AF1=0.5;AC1=1;DP4=7,0,5,0;MQ=60;FQ=32;PV4=1,1.6e-05,1,0.026 GT:PL:GQ 0/1:59,0,141:62 chr1 23418153 . C T 181 . DP=69;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,44;MQ=59;FQ=-226 GT:PL:GQ 1/1:214,199,0:99 chr1 23419261 . G A 222 . DP=72;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,31,34;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr1 23419374 . G T 153 . DP=72;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,41,29;MQ=60;FQ=-238 GT:PL:GQ 1/1:186,211,0:99 chr1 23419383 . C T 222 . DP=77;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,42,32;MQ=60;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr1 23419855 . T C 222 . DP=84;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,39,42;MQ=60;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr1 23688933 . A G 95 . DP=53;VDB=0.0398;AF1=0.5;AC1=1;DP4=18,12,11,9;MQ=60;FQ=98;PV4=0.78,9.9e-19,1,0.41 GT:PL:GQ 0/1:125,0,255:99 chr1 23693422 . T C 31 . DP=5;VDB=0.0194;AF1=0.5;AC1=1;DP4=2,1,2,0;MQ=60;FQ=34;PV4=1,1,1,1 GT:PL:GQ 0/1:61,0,87:64 chr1 23696152 . G A 99 . DP=28;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,8,2,15;MQ=60;FQ=102;PV4=0.61,1.5e-10,1,1 GT:PL:GQ 0/1:129,0,181:99 chr1 23710805 . A G 161 . DP=45;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,11,15,9;MQ=60;FQ=164;PV4=0.36,3.7e-12,1,0.33 GT:PL:GQ 0/1:191,0,255:99 chr1 23713952 . T G 76 . DP=22;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,8,3,8;MQ=59;FQ=79;PV4=1,1.3e-10,1,0.22 GT:PL:GQ 0/1:106,0,203:99 chr1 23724183 . C T 122 . DP=26;VDB=0.0190;AF1=0.5;AC1=1;DP4=10,3,7,6;MQ=60;FQ=125;PV4=0.41,1e-08,1,1 GT:PL:GQ 0/1:152,0,225:99 chr1 23735241 . G T 99 . DP=20;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,8,4,6;MQ=59;FQ=102;PV4=0.63,5.1e-09,0.17,1 GT:PL:GQ 0/1:129,0,203:99 chr1 23751140 . G T 225 . DP=44;VDB=0.0393;AF1=0.5;AC1=1;DP4=3,19,8,14;MQ=59;FQ=208;PV4=0.16,0.097,1,0.18 GT:PL:GQ 0/1:255,0,235:99 chr1 23755513 . T C 119 . DP=21;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,4,15;MQ=60;FQ=-84 GT:PL:GQ 1/1:152,57,0:99 chr1 23765472 . A G 113 . DP=15;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,10;MQ=60;FQ=-66 GT:PL:GQ 1/1:146,39,0:75 chr1 23810658 . G A 60.3 . DP=5;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:93,15,0:27 chr1 23836364 . A G 140 . DP=22;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,17,4;MQ=60;FQ=-90 GT:PL:GQ 1/1:173,63,0:99 chr1 23847464 . C A 222 . DP=43;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,12,29;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 23885498 . T C 225 . DP=86;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,18,26,13;MQ=60;FQ=225;PV4=0.5,1,1,0.064 GT:PL:GQ 0/1:255,0,255:99 chr1 24018277 . C G 209 . DP=61;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,27,31;MQ=59;FQ=-202 GT:PL:GQ 1/1:242,175,0:99 chr1 24022437 . A G 114 . DP=52;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,16,8,10;MQ=59;FQ=117;PV4=0.77,3.9e-14,0.32,0.26 GT:PL:GQ 0/1:144,0,255:99 chr1 24083494 . C T 222 . DP=22;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,16,5;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 24106510 . ATTTT ATTTTT 116 . INDEL;DP=21;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,17;MQ=60;FQ=-88.5 GT:PL:GQ 1/1:157,54,0:99 chr1 24129126 . A G,T 211 . DP=84;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,29,52;MQ=59;FQ=-268 GT:PL:GQ 1/1:244,241,0,246,224,243:99 chr1 24134721 . T C 222 . DP=55;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,34,21;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 24143932 . A G 168 . DP=21;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,14,5;MQ=60;FQ=-84 GT:PL:GQ 1/1:201,57,0:99 chr1 24180962 . T C 222 . DP=99;VDB=0.0399;AF1=1;AC1=2;DP4=0,1,32,60;MQ=59;FQ=-267;PV4=1,8.7e-06,0.42,0.21 GT:PL:GQ 1/1:255,240,0:99 chr1 24192200 . A G 81 . DP=12;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:114,36,0:69 chr1 24301721 . T C 9.31 . DP=2;VDB=0.0135;AF1=1;AC1=2;DP4=0,0,0,2;MQ=22;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr1 24383819 . T C 64 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:96,9,0:16 chr1 24388371 . T C 176 . DP=25;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,23,0;MQ=60;FQ=-96 GT:PL:GQ 1/1:209,69,0:99 chr1 24389509 . GAAA GA 56.2 . INDEL;DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:95,6,0:10 chr1 24390731 . C T 157 . DP=20;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,3,17;MQ=60;FQ=-87 GT:PL:GQ 1/1:190,60,0:99 chr1 24393656 . G A 163 . DP=55;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,35;MQ=58;FQ=-175 GT:PL:GQ 1/1:196,148,0:99 chr1 24393729 . G A 59 . DP=20;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,18;MQ=57;FQ=-84 GT:PL:GQ 1/1:92,57,0:99 chr1 24400584 . G C 222 . DP=46;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,33,11;MQ=59;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 24400633 . C G 168 . DP=47;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,21,24;MQ=59;FQ=-162 GT:PL:GQ 1/1:201,135,0:99 chr1 24406647 . G A 222 . DP=51;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,18,31;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 24408015 . C G 108 . DP=17;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,3,13;MQ=60;FQ=-75 GT:PL:GQ 1/1:141,48,0:93 chr1 24408765 . T C 27.1 . DP=9;VDB=0.0118;AF1=0.5129;AC1=1;DP4=0,1,0,8;MQ=60;FQ=-14.2;PV4=1,2e-05,1,1 GT:PL:GQ 0/1:57,0,13:16 chr1 24409191 . C T 217 . DP=45;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,26,15;MQ=60;FQ=-150 GT:PL:GQ 1/1:250,123,0:99 chr1 24413159 . T C 222 . DP=44;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,26,16;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 24413427 . T G 16.9 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:48,6,0:10 chr1 24416059 . T C 162 . DP=30;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,23,7;MQ=60;FQ=-117 GT:PL:GQ 1/1:195,90,0:99 chr1 24416070 . G C 177 . DP=30;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,21,7;MQ=60;FQ=-111 GT:PL:GQ 1/1:210,84,0:99 chr1 24418768 . T C 51 . DP=11;VDB=0.0095;AF1=0.5;AC1=1;DP4=1,6,0,4;MQ=60;FQ=54;PV4=1,0.17,1,1 GT:PL:GQ 0/1:81,0,160:84 chr1 24419496 . A G 197 . DP=52;VDB=0.0365;AF1=0.5;AC1=1;DP4=23,9,14,6;MQ=60;FQ=200;PV4=1,0.028,1,0.019 GT:PL:GQ 0/1:227,0,255:99 chr1 24421334 . G T 83 . DP=22;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,1,12,2;MQ=60;FQ=79.8;PV4=1,4.1e-07,1,0.46 GT:PL:GQ 0/1:113,0,108:99 chr1 24421474 . G A 225 . DP=39;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,11,7,16;MQ=59;FQ=225;PV4=1,0.017,0.21,1 GT:PL:GQ 0/1:255,0,255:99 chr1 24421875 . C T 54 . DP=12;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,0,7,0;MQ=60;FQ=56.8;PV4=1,0.0045,1,1 GT:PL:GQ 0/1:84,0,97:87 chr1 24421950 . C G 165 . DP=66;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,11,23,12;MQ=60;FQ=168;PV4=0.79,8.4e-23,1,1 GT:PL:GQ 0/1:195,0,255:99 chr1 24434717 . TCCCCCC TCCCCCCC 28.5 . INDEL;DP=10;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-58.5 GT:PL:GQ 1/1:69,24,0:44 chr1 24448084 . G A 204 . DP=55;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,22,30;MQ=60;FQ=-184 GT:PL:GQ 1/1:237,157,0:99 chr1 24460797 . T G 153 . DP=48;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,29,16;MQ=60;FQ=-162 GT:PL:GQ 1/1:186,135,0:99 chr1 24484441 . A G 222 . DP=28;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,21;MQ=59;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 24485518 . T C 43.3 . DP=6;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:76,15,0:27 chr1 24485813 . T C 40.1 . DP=7;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:73,18,0:33 chr1 24485941 . T C 139 . DP=40;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,9;MQ=59;FQ=-141 GT:PL:GQ 1/1:172,114,0:99 chr1 24513768 . G A 76.3 . DP=7;VDB=0.0263;AF1=1;AC1=2;DP4=0,0,3,2;MQ=60;FQ=-42 GT:PL:GQ 1/1:109,15,0:27 chr1 24671287 . C T 175 . DP=72;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,19,18,13;MQ=60;FQ=178;PV4=0.81,6.2e-16,1,0.13 GT:PL:GQ 0/1:205,0,255:99 chr1 24673866 . A G 88 . DP=46;VDB=0.0271;AF1=0.5;AC1=1;DP4=22,7,12,4;MQ=59;FQ=91;PV4=1,1.5e-16,0.027,1 GT:PL:GQ 0/1:118,0,255:99 chr1 24684116 . G A 33 . DP=17;VDB=0.0053;AF1=0.5;AC1=1;DP4=6,1,8,0;MQ=57;FQ=36;PV4=0.47,9e-07,1,0.44 GT:PL:GQ 0/1:63,0,140:66 chr1 24684728 . G A 225 . DP=38;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,5,14,8;MQ=60;FQ=204;PV4=1,1,1,0.49 GT:PL:GQ 0/1:255,0,231:99 chr1 24690764 . T A 141 . DP=81;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,35,11,22;MQ=59;FQ=144;PV4=0.62,5e-21,0.4,1 GT:PL:GQ 0/1:171,0,255:99 chr1 24718079 . C A 222 . DP=70;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,46;MQ=60;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr1 24727678 . C T 77 . DP=13;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:110,36,0:69 chr1 24775967 . G A 89.5 . DP=5;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:122,12,0:21 chr1 24779873 . C T 106 . DP=25;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,20,4;MQ=59;FQ=-99 GT:PL:GQ 1/1:139,72,0:99 chr1 24784197 . T C 188 . DP=28;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,21,6;MQ=59;FQ=-108 GT:PL:GQ 1/1:221,81,0:99 chr1 24792617 . T A 222 . DP=86;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,27,58;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 24989762 . G T 129 . DP=44;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,36;MQ=59;FQ=-156 GT:PL:GQ 1/1:162,129,0:99 chr1 25098245 . T C 56 . DP=21;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,20,0;MQ=60;FQ=-87 GT:PL:GQ 1/1:89,60,0:99 chr1 25098341 . C T 166 . DP=116;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,71,40;MQ=59;FQ=-282;PV4=1,2.4e-10,0.43,0.23 GT:PL:GQ 1/1:199,255,0:99 chr1 25153692 . G A 222 . DP=34;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,16,17;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 25254317 . C T 29 . DP=18;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,7,0,11;MQ=59;FQ=32;PV4=1,4.3e-07,0.22,0.45 GT:PL:GQ 0/1:59,0,121:62 chr1 25291010 . A T 148 . DP=37;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,3,12,8;MQ=60;FQ=151;PV4=0.28,7.6e-07,1,1 GT:PL:GQ 0/1:178,0,214:99 chr1 25611035 . G C 145 . DP=34;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,27,3;MQ=52;FQ=-117 GT:PL:GQ 1/1:178,90,0:99 chr1 25678238 . T A 152 . DP=41;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,3,35;MQ=60;FQ=-141 GT:PL:GQ 1/1:185,114,0:99 chr1 25747230 . G C 59 . DP=26;VDB=0.0164;AF1=0.5;AC1=1;DP4=5,10,1,9;MQ=40;FQ=62;PV4=0.34,1.7e-07,0.0018,1 GT:PL:GQ 0/1:89,0,233:92 chr1 25780668 . C T 48 . DP=32;VDB=0.0019;AF1=0.5;AC1=1;DP4=17,1,14,0;MQ=58;FQ=51;PV4=1,4.7e-18,0.15,0.15 GT:PL:GQ 0/1:78,0,217:81 chr1 25780889 . Atgt ATGtgt 159 . INDEL;DP=24;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,9,0,8;MQ=59;FQ=162;PV4=1,0.44,0.15,1 GT:PL:GQ 0/1:197,0,205:99 chr1 25785451 . A G 120 . DP=22;VDB=0.0042;AF1=0.5;AC1=1;DP4=3,9,0,10;MQ=60;FQ=123;PV4=0.22,0.28,1,0.46 GT:PL:GQ 0/1:150,0,233:99 chr1 25889342 . cagag cag 145 . INDEL;DP=13;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,6,0,7;MQ=54;FQ=145;PV4=1,0.12,0.32,0.46 GT:PL:GQ 0/1:183,0,182:99 chr1 25889422 . C T 63 . DP=10;VDB=0.0099;AF1=0.5;AC1=1;DP4=3,0,6,1;MQ=60;FQ=45;PV4=1,3.3e-05,1,1 GT:PL:GQ 0/1:93,0,72:75 chr1 25889632 . T C 61 . DP=49;VDB=0.0384;AF1=0.5;AC1=1;DP4=5,20,4,17;MQ=59;FQ=64;PV4=1,6.3e-19,0.14,0.14 GT:PL:GQ 0/1:91,0,255:94 chr1 25889672 . G A 98 . DP=25;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,9,1,11;MQ=60;FQ=101;PV4=1,2.4e-06,1,0.38 GT:PL:GQ 0/1:128,0,169:99 chr1 25890050 . A G 27 . DP=24;VDB=0.0033;AF1=0.5;AC1=1;DP4=11,0,11,0;MQ=60;FQ=30;PV4=1,1.3e-13,1,0.24 GT:PL:GQ 0/1:57,0,164:60 chr1 25890189 . A G 185 . DP=110;VDB=0.0399;AF1=0.5;AC1=1;DP4=28,28,20,31;MQ=60;FQ=188;PV4=0.33,4.4e-21,1,1 GT:PL:GQ 0/1:215,0,255:99 chr1 25893221 . G T 3.54 . DP=9;VDB=0.0014;AF1=0.4998;AC1=1;DP4=5,0,4,0;MQ=57;FQ=5.47;PV4=1,2.6e-05,0.15,1 GT:PL:GQ 0/1:31,0,113:30 chr1 26085048 . AGGGGGG AGGGGG 59.5 . INDEL;DP=41;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,37,4;MQ=59;FQ=-158 GT:PL:GQ 1/1:100,123,0:99 chr1 26090072 . A G 156 . DP=34;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,25,8;MQ=57;FQ=-126 GT:PL:GQ 1/1:189,99,0:99 chr1 26090285 . T G 71 . DP=41;VDB=0.0190;AF1=0.5;AC1=1;DP4=17,3,19,0;MQ=60;FQ=74;PV4=0.23,2.2e-16,1,0.039 GT:PL:GQ 0/1:101,0,255:99 chr1 26098107 . G A 54 . DP=16;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,1,7,0;MQ=60;FQ=57;PV4=1,0.002,1,1 GT:PL:GQ 0/1:84,0,149:87 chr1 26098333 . G A 110 . DP=12;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,2,10;MQ=60;FQ=-63 GT:PL:GQ 1/1:143,36,0:69 chr1 26107688 . C A 222 . DP=51;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,31,18;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 26109237 . A G 23 . DP=32;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,18,0,13;MQ=60;FQ=26;PV4=1,6.5e-15,1,1 GT:PL:GQ 0/1:53,0,201:56 chr1 26110065 . A G 71 . DP=27;VDB=0.0140;AF1=0.5;AC1=1;DP4=12,2,11,2;MQ=60;FQ=74;PV4=1,6.3e-12,1,1 GT:PL:GQ 0/1:101,0,219:99 chr1 26110143 . G A 225 . DP=66;VDB=0.0298;AF1=0.5;AC1=1;DP4=22,10,20,12;MQ=60;FQ=225;PV4=0.79,1,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr1 26127425 . G A 41 . DP=8;VDB=0.0002;AF1=0.5;AC1=1;DP4=2,0,4,1;MQ=60;FQ=26;PV4=1,0.0026,1,0.1 GT:PL:GQ 0/1:71,0,53:56 chr1 26131654 . G A 213 . DP=16;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,15,1;MQ=60;FQ=-75 GT:PL:GQ 1/1:246,48,0:93 chr1 26138136 . C A 222 . DP=48;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,23,22;MQ=58;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 26138262 . T C 123 . DP=33;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,25;MQ=60;FQ=-117 GT:PL:GQ 1/1:156,90,0:99 chr1 26139392 . A G 165 . DP=25;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,8,16;MQ=60;FQ=-99 GT:PL:GQ 1/1:198,72,0:99 chr1 26139444 . G A 57.1 . DP=7;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:90,21,0:39 chr1 26139919 . C T 20.8 . DP=2;VDB=0.0171;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:52,6,0:10 chr1 26140573 . C A 179 . DP=77;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,35,38;MQ=59;FQ=-247 GT:PL:GQ 1/1:212,220,0:99 chr1 26146884 . C G 211 . DP=20;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,9,10;MQ=58;FQ=-84 GT:PL:GQ 1/1:244,57,0:99 chr1 26147017 . C T 92 . DP=15;VDB=0.0081;AF1=0.5;AC1=1;DP4=3,6,2,4;MQ=58;FQ=95;PV4=1,0.4,1,0.042 GT:PL:GQ 0/1:122,0,176:99 chr1 26150023 . C T 163 . DP=33;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,25,7;MQ=59;FQ=-123 GT:PL:GQ 1/1:196,96,0:99 chr1 26152666 . T C 91 . DP=24;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,21,3;MQ=60;FQ=-99 GT:PL:GQ 1/1:124,72,0:99 chr1 26152758 . A G 222 . DP=80;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,45,28;MQ=59;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr1 26230255 . C A 10.4 . DP=3;VDB=0.0069;AF1=0.5002;AC1=1;DP4=0,1,1,1;MQ=60;FQ=5.1;PV4=1,0.28,1,0.26 GT:PL:GQ 0/1:40,0,31:34 chr1 26310394 . A G 82 . DP=33;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,5,11,4;MQ=60;FQ=85;PV4=1,3.8e-14,1,0.067 GT:PL:GQ 0/1:112,0,255:99 chr1 26314564 . T C 110 . DP=15;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,13,2;MQ=60;FQ=-72 GT:PL:GQ 1/1:143,45,0:87 chr1 26317383 . G A 173 . DP=30;VDB=0.0081;AF1=0.5;AC1=1;DP4=3,11,2,14;MQ=60;FQ=176;PV4=0.64,0.11,1,1 GT:PL:GQ 0/1:203,0,232:99 chr1 26349245 . C T 96 . DP=43;VDB=0.0359;AF1=0.5;AC1=1;DP4=14,9,13,5;MQ=59;FQ=99;PV4=0.52,3.6e-11,1,0.45 GT:PL:GQ 0/1:126,0,255:99 chr1 26349967 . C T 222 . DP=14;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,4,10;MQ=60;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr1 26357656 . C A 222 . DP=124;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,54,64;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 26357855 . A G 219 . DP=50;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,32,15;MQ=60;FQ=-142;PV4=1,0.05,1,0.21 GT:PL:GQ 1/1:252,115,0:99 chr1 26358752 . TAA TAAA 214 . INDEL;DP=42;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,35,6;MQ=60;FQ=-158 GT:PL:GQ 1/1:255,123,0:99 chr1 26365374 . T G 21.5 . DP=5;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:54,12,0:21 chr1 26365549 . C T 222 . DP=23;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,17,6;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr1 26372144 . A G 34.3 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:67,15,0:27 chr1 26383645 . CCAGGGGTCAGG CCAGG 35.5 . INDEL;DP=18;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,3,6,0;MQ=52;FQ=38.5;PV4=0.51,0.26,0,1 GT:PL:GQ 0/1:73,0,255:76 chr1 26487940 . A G 225 . DP=45;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,12,11,8;MQ=59;FQ=212;PV4=0.33,1,0.16,0.35 GT:PL:GQ 0/1:255,0,239:99 chr1 26496455 . C T 117 . DP=19;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,1,8,4;MQ=60;FQ=111;PV4=0.6,1.7e-05,1,0.26 GT:PL:GQ 0/1:147,0,138:99 chr1 26511700 . A G 69 . DP=42;VDB=0.0244;AF1=0.5;AC1=1;DP4=8,16,4,12;MQ=60;FQ=72;PV4=0.73,8.8e-17,1,1 GT:PL:GQ 0/1:99,0,255:99 chr1 26524706 . A G 222 . DP=37;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,19,18;MQ=59;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 26526554 . G A 214 . DP=30;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,11,4,13;MQ=60;FQ=155;PV4=0.37,0.017,1,0.14 GT:PL:GQ 0/1:244,0,182:99 chr1 26527304 . T C 31.5 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:64,12,0:21 chr1 26527310 . C G 18.6 . DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:51,12,0:20 chr1 26527951 . G A 127 . DP=71;VDB=0.0298;AF1=0.5;AC1=1;DP4=28,11,19,11;MQ=59;FQ=130;PV4=0.6,5.5e-14,1,1 GT:PL:GQ 0/1:157,0,255:99 chr1 26528922 . C G 114 . DP=26;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,1,10,4;MQ=60;FQ=117;PV4=0.34,1.6e-08,1,0.4 GT:PL:GQ 0/1:144,0,168:99 chr1 26529121 . G C 15.6 . DP=4;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:48,12,0:20 chr1 26582091 . G A 195 . DP=119;VDB=0.0322;AF1=0.5;AC1=1;DP4=34,21,31,30;MQ=59;FQ=198;PV4=0.26,6.6e-31,1,1 GT:PL:GQ 0/1:225,0,255:99 chr1 26596080 . G A 112 . DP=28;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,8,6,8;MQ=60;FQ=115;PV4=1,1.9e-06,1,1 GT:PL:GQ 0/1:142,0,242:99 chr1 26597435 . G A 190 . DP=55;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,38,17;MQ=60;FQ=-193 GT:PL:GQ 1/1:223,166,0:99 chr1 26597673 . G A 99.3 . DP=5;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:132,15,0:27 chr1 26601385 . G A 118 . DP=40;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,1,21,3;MQ=60;FQ=121;PV4=1,1.2e-14,1,1 GT:PL:GQ 0/1:148,0,187:99 chr1 26601570 . A G 73 . DP=32;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,15,1,13;MQ=60;FQ=76;PV4=0.61,5.8e-15,1,0.23 GT:PL:GQ 0/1:103,0,253:99 chr1 26606174 . A C 40 . DP=14;VDB=0.0053;AF1=0.5;AC1=1;DP4=5,1,4,1;MQ=60;FQ=43;PV4=1,4.8e-06,1,0.43 GT:PL:GQ 0/1:70,0,144:73 chr1 26606566 . ACGGCGGCGGCG ACGGCGGCGGCGGCG 69.5 . INDEL;DP=14;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,3,2,1;MQ=57;FQ=72.5;PV4=1,1,0.11,1 GT:PL:GQ 0/1:107,0,194:99 chr1 26607726 . T G 37 . DP=6;VDB=0.0011;AF1=0.5016;AC1=1;DP4=0,1,1,3;MQ=60;FQ=-6.18;PV4=1,0.036,1,0.17 GT:PL:GQ 0/1:67,0,22:25 chr1 26608761 . C T 24 . DP=4;VDB=0.0102;AF1=0.5;AC1=1;DP4=0,2,1,1;MQ=54;FQ=23.5;PV4=1,1,0.21,0.33 GT:PL:GQ 0/1:54,0,53:53 chr1 26608782 . C T 25 . DP=4;VDB=0.0125;AF1=0.5;AC1=1;DP4=2,0,1,1;MQ=47;FQ=14;PV4=1,0.23,1,1 GT:PL:GQ 0/1:55,0,41:44 chr1 26608814 . A G 53.3 . DP=6;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,1;MQ=43;FQ=-42 GT:PL:GQ 1/1:86,15,0:27 chr1 26608867 . C A 39 . DP=11;VDB=0.0001;AF1=0.5;AC1=1;DP4=2,2,5,0;MQ=38;FQ=42;PV4=0.17,0.0067,0.045,0.072 GT:PL:GQ 0/1:69,0,90:72 chr1 26608877 . gccgggaccgggaccgggac gccgggaccgggac 82.5 . INDEL;DP=12;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,0,5,2;MQ=37;FQ=49.5;PV4=1,1,1.3e-05,1 GT:PL:GQ 0/1:120,0,84:87 chr1 26609259 . C T 225 . DP=107;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,34,27,18;MQ=59;FQ=225;PV4=0.12,5.8e-05,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 26609307 . G T 222 . DP=91;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,36,50;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 26610891 . A C 222 . DP=37;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,19,15;MQ=59;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 26612042 . A G 99 . DP=12;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,3,7;MQ=58;FQ=-57 GT:PL:GQ 1/1:132,30,0:57 chr1 26612297 . C A 31 . DP=23;VDB=0.0042;AF1=0.5;AC1=1;DP4=8,1,11,1;MQ=60;FQ=34;PV4=1,3.1e-10,1,1 GT:PL:GQ 0/1:61,0,167:64 chr1 26612460 . G A 172 . DP=75;VDB=0.0271;AF1=0.5;AC1=1;DP4=14,24,8,28;MQ=59;FQ=175;PV4=0.21,7e-15,0.48,1 GT:PL:GQ 0/1:202,0,255:99 chr1 26620846 . C CA 171 . INDEL;DP=45;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,3,37;MQ=60;FQ=-155 GT:PL:GQ 1/1:212,120,0:99 chr1 26623641 . C T 63 . DP=3;VDB=0.0107;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:95,9,0:16 chr1 26627478 . T C 180 . DP=225;VDB=0.0365;AF1=0.5;AC1=1;DP4=65,57,51,45;MQ=60;FQ=183;PV4=1,5.2e-57,1,1 GT:PL:GQ 0/1:210,0,255:99 chr1 26629465 . G C 19.1 . DP=9;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,2,0,6;MQ=57;FQ=19.1;PV4=1,4.3e-06,0.3,0.27 GT:PL:GQ 0/1:49,0,49:49 chr1 26644399 . C T 75 . DP=27;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,3,13,2;MQ=60;FQ=78;PV4=0.33,2.1e-12,1,1 GT:PL:GQ 0/1:105,0,195:99 chr1 26646726 . A G 180 . DP=107;VDB=0.0298;AF1=0.5;AC1=1;DP4=18,23,25,38;MQ=59;FQ=183;PV4=0.69,2.1e-24,0.3,1 GT:PL:GQ 0/1:210,0,255:99 chr1 26646730 . A G 175 . DP=103;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,22,24,41;MQ=58;FQ=178;PV4=0.83,8.3e-26,0.42,1 GT:PL:GQ 0/1:205,0,255:99 chr1 26648551 . G C 95 . DP=98;VDB=0.0392;AF1=0.5;AC1=1;DP4=36,17,27,13;MQ=59;FQ=98;PV4=1,3.4e-35,1,1 GT:PL:GQ 0/1:125,0,255:99 chr1 26648838 . G T 44 . DP=8;VDB=0.0004;AF1=0.5;AC1=1;DP4=1,2,0,5;MQ=60;FQ=43.5;PV4=0.37,0.03,1,0.2 GT:PL:GQ 0/1:74,0,73:73 chr1 26650550 . C A 77 . DP=35;VDB=0.0033;AF1=0.5;AC1=1;DP4=17,1,14,2;MQ=60;FQ=80;PV4=0.59,5.6e-16,1,1 GT:PL:GQ 0/1:107,0,207:99 chr1 26654937 . G C 144 . DP=33;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,3,30;MQ=60;FQ=-126 GT:PL:GQ 1/1:177,99,0:99 chr1 26655208 . C T 35 . DP=30;VDB=0.0099;AF1=0.5;AC1=1;DP4=14,3,11,2;MQ=60;FQ=38;PV4=1,3.6e-14,1,0.49 GT:PL:GQ 0/1:65,0,249:68 chr1 26662774 . C T 222 . DP=82;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,56,23;MQ=59;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr1 26662904 . C T 136 . DP=98;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,31,20,31;MQ=59;FQ=139;PV4=0.28,6.4e-26,0.33,1 GT:PL:GQ 0/1:166,0,255:99 chr1 26663362 . C T 121 . DP=18;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,3,8,4;MQ=60;FQ=92;PV4=0.59,3.7e-06,1,1 GT:PL:GQ 0/1:151,0,119:99 chr1 26664219 . T C 50 . DP=20;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,11,2,5;MQ=60;FQ=53;PV4=0.59,1e-06,1,0.31 GT:PL:GQ 0/1:80,0,216:83 chr1 26664968 . C T 161 . DP=36;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,9,9,9;MQ=60;FQ=164;PV4=0.74,5.8e-08,1,0.092 GT:PL:GQ 0/1:191,0,255:99 chr1 26670444 . G T 148 . DP=53;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,13,12,12;MQ=60;FQ=151;PV4=1,7.3e-13,0.15,1 GT:PL:GQ 0/1:178,0,255:99 chr1 26670609 . C T 225 . DP=78;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,17,20,14;MQ=60;FQ=225;PV4=1,1,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 26671575 . A G 56 . DP=10;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,2,6;MQ=44;FQ=-51 GT:PL:GQ 1/1:89,24,0:45 chr1 26671578 . A G 111 . DP=12;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,3,8;MQ=45;FQ=-60 GT:PL:GQ 1/1:144,33,0:63 chr1 26671658 . G A 31 . DP=24;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,9,2,4;MQ=58;FQ=34;PV4=0.66,0.00039,1,1 GT:PL:GQ 0/1:61,0,255:64 chr1 26688181 . G C 40 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,5,7,5;MQ=60;FQ=43;PV4=0.71,9.7e-15,1,1 GT:PL:GQ 0/1:70,0,255:73 chr1 26694245 . T C 129 . DP=15;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,2,4,3;MQ=60;FQ=132;PV4=0.61,0.21,1,0.11 GT:PL:GQ 0/1:159,0,181:99 chr1 26694260 . T C 66 . DP=15;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,2,4,3;MQ=60;FQ=69;PV4=0.61,1.2e-05,1,1 GT:PL:GQ 0/1:96,0,175:99 chr1 26698884 . T C 69 . DP=32;VDB=0.0140;AF1=0.5;AC1=1;DP4=14,1,17,0;MQ=59;FQ=72;PV4=0.47,1.3e-14,0.091,0.4 GT:PL:GQ 0/1:99,0,197:99 chr1 26698938 . A G 167 . DP=72;VDB=0.0392;AF1=0.5;AC1=1;DP4=29,4,28,9;MQ=59;FQ=170;PV4=0.23,5.6e-23,1,1 GT:PL:GQ 0/1:197,0,255:99 chr1 26699103 . T C 28 . DP=48;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,29,1,13;MQ=59;FQ=31;PV4=0.33,2.6e-14,0.076,1 GT:PL:GQ 0/1:58,0,180:61 chr1 26699157 . T C 26 . DP=6;VDB=0.0007;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=60;FQ=19.5;PV4=1,0.0075,1,1 GT:PL:GQ 0/1:56,0,47:50 chr1 26700795 . T C 165 . DP=55;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,36;MQ=60;FQ=-181 GT:PL:GQ 1/1:198,154,0:99 chr1 26752992 . T C 32 . DP=25;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,13,1,9;MQ=59;FQ=35;PV4=1,1.6e-15,0.12,1 GT:PL:GQ 0/1:62,0,208:65 chr1 26801229 . C A 105 . DP=34;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,13,3,13;MQ=60;FQ=108;PV4=1,3.8e-11,1,1 GT:PL:GQ 0/1:135,0,255:99 chr1 26856462 . T G 44 . DP=3;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:76,9,0:16 chr1 26869610 . G A 172 . DP=74;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,57,15;MQ=60;FQ=-244 GT:PL:GQ 1/1:205,217,0:99 chr1 26878390 . G A 133 . DP=17;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,6,0,11;MQ=59;FQ=81;PV4=1,0.43,1,1 GT:PL:GQ 0/1:163,0,108:99 chr1 26879920 . T C 222 . DP=59;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,42,17;MQ=59;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 26881565 . AGGGG AGGG 55.5 . INDEL;DP=23;VDB=0.0066;AF1=0.5;AC1=1;DP4=8,1,14,0;MQ=60;FQ=51.5;PV4=0.39,3.8e-09,1,0.38 GT:PL:GQ 0/1:93,0,87:89 chr1 26881858 . C T 60 . DP=25;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,7,6,5;MQ=60;FQ=63;PV4=1,2.9e-11,1,1 GT:PL:GQ 0/1:90,0,251:93 chr1 26900708 . G A 107 . DP=62;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,22,6,25;MQ=59;FQ=110;PV4=0.76,8.1e-24,1,1 GT:PL:GQ 0/1:137,0,255:99 chr1 26900735 . C G 222 . DP=42;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,12,27;MQ=59;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 26900805 . G A 70 . DP=24;VDB=0.0359;AF1=0.5;AC1=1;DP4=8,3,7,4;MQ=59;FQ=73;PV4=1,1.1e-10,1,0.45 GT:PL:GQ 0/1:100,0,211:99 chr1 26900920 . A T 138 . DP=49;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,13,14,11;MQ=60;FQ=141;PV4=0.56,1.6e-14,1,0.19 GT:PL:GQ 0/1:168,0,255:99 chr1 26901090 . C T 91 . DP=10;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,5,0,5;MQ=60;FQ=81.7;PV4=1,1,1,1 GT:PL:GQ 0/1:121,0,109:99 chr1 27089446 . G C 179 . DP=25;VDB=0.0042;AF1=0.5;AC1=1;DP4=9,0,15,1;MQ=58;FQ=114;PV4=1,0.012,1,1 GT:PL:GQ 0/1:209,0,141:99 chr1 27180088 . A C 53 . DP=20;VDB=0.0140;AF1=0.5;AC1=1;DP4=11,0,8,1;MQ=60;FQ=56;PV4=0.45,4.8e-11,1,1 GT:PL:GQ 0/1:83,0,166:86 chr1 27210721 . T C 134 . DP=42;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,10,14,6;MQ=59;FQ=137;PV4=0.34,6.1e-14,1,1 GT:PL:GQ 0/1:164,0,255:99 chr1 27239920 . C G 137 . DP=55;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,5,24,7;MQ=60;FQ=140;PV4=1,2.6e-14,1,0.46 GT:PL:GQ 0/1:167,0,255:99 chr1 27248440 . C T 68 . DP=23;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,7,4,3;MQ=60;FQ=71;PV4=1,0.0088,1,1 GT:PL:GQ 0/1:98,0,255:99 chr1 27260783 . C T 35.8 . DP=2;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:67,6,0:10 chr1 27272600 . ATCTT ATCTTCTT 217 . INDEL;DP=33;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,13,6,8;MQ=57;FQ=217;PV4=0.44,1,0.0087,1 GT:PL:GQ 0/1:255,0,255:99 chr1 27278573 . T C 104 . DP=28;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,11,6,6;MQ=60;FQ=107;PV4=0.44,5.6e-08,1,0.3 GT:PL:GQ 0/1:134,0,255:99 chr1 27320356 . T C 45.3 . DP=5;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:78,15,0:27 chr1 27333209 . T C 225 . DP=152;VDB=0.0392;AF1=0.5;AC1=1;DP4=43,32,32,39;MQ=60;FQ=225;PV4=0.18,1,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr1 27426796 . T C 222 . DP=19;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,15,3;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr1 27427041 . T C 203 . DP=105;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,35,65;MQ=60;FQ=-282 GT:PL:GQ 1/1:236,255,0:99 chr1 27428321 . T C 18.1 . DP=5;VDB=0.0067;AF1=0.5;AC1=1;DP4=0,3,0,2;MQ=60;FQ=21;PV4=1,0.36,1,0.47 GT:PL:GQ 0/1:48,0,76:51 chr1 27480757 . A G 157 . DP=50;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,8,14,11;MQ=60;FQ=160;PV4=0.56,1.6e-12,1,0.49 GT:PL:GQ 0/1:187,0,255:99 chr1 27609980 . T G 222 . DP=30;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,19;MQ=58;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 27679692 . A G 68 . DP=14;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,14,0;MQ=58;FQ=-69 GT:PL:GQ 1/1:101,42,0:81 chr1 27679797 . A G 214 . DP=106;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,69,33;MQ=60;FQ=-282 GT:PL:GQ 1/1:247,255,0:99 chr1 27680292 . A G 222 . DP=32;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,13,17;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 27682440 . t tG 214 . INDEL;DP=49;VDB=0.0392;AF1=1;AC1=2;DP4=1,1,31,15;MQ=60;FQ=-118;PV4=1,1,1,0.15 GT:PL:GQ 1/1:255,83,0:99 chr1 27682481 . G A 220 . DP=67;VDB=0.0365;AF1=1;AC1=2;DP4=1,1,39,24;MQ=59;FQ=-172;PV4=1,0.0094,1,0.18 GT:PL:GQ 1/1:253,145,0:99 chr1 27686063 . G C 187 . DP=11;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,10;MQ=58;FQ=-60 GT:PL:GQ 1/1:220,33,0:63 chr1 27687466 . G T 118 . DP=22;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,8,8;MQ=60;FQ=-75 GT:PL:GQ 1/1:151,48,0:93 chr1 27690359 . T C 112 . DP=13;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:145,39,0:75 chr1 27690644 . A G 222 . DP=34;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,17,15;MQ=60;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr1 27696011 . C T 183 . DP=34;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,32;MQ=60;FQ=-123 GT:PL:GQ 1/1:216,96,0:99 chr1 27875824 . C T 222 . DP=60;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,26,32;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 27944000 . T A 96.3 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:129,15,0:27 chr1 27995077 . G T 4.13 . DP=16;VDB=0.0244;AF1=0.4998;AC1=1;DP4=0,9,0,5;MQ=60;FQ=6.2;PV4=1,1e-05,1,1 GT:PL:GQ 0/1:32,0,149:31 chr1 28058990 . G T 57 . DP=43;VDB=0.0066;AF1=0.5;AC1=1;DP4=18,3,19,2;MQ=58;FQ=60;PV4=1,7.8e-20,0.28,1 GT:PL:GQ 0/1:87,0,245:90 chr1 28060574 . A G 196 . DP=116;VDB=0.0399;AF1=0.5;AC1=1;DP4=27,26,32,28;MQ=60;FQ=199;PV4=0.85,2.2e-28,1,0.09 GT:PL:GQ 0/1:226,0,255:99 chr1 28086955 . C A 222 . DP=24;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,4;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr1 28173614 . C G 199 . DP=44;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,17,2,17;MQ=60;FQ=202;PV4=0.26,1,1,1 GT:PL:GQ 0/1:229,0,255:99 chr1 28206588 . T C 161 . DP=58;VDB=0.0190;AF1=0.5;AC1=1;DP4=8,26,2,16;MQ=59;FQ=164;PV4=0.46,0.3,1,1 GT:PL:GQ 0/1:191,0,255:99 chr1 28209305 . A G 142 . DP=72;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,29,12,16;MQ=59;FQ=145;PV4=0.47,9.2e-17,1,0.47 GT:PL:GQ 0/1:172,0,255:99 chr1 28209362 . T C 98 . DP=48;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,18,6,11;MQ=60;FQ=101;PV4=0.76,4.2e-15,1,1 GT:PL:GQ 0/1:128,0,255:99 chr1 28209366 . A G 73 . DP=47;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,17,6,11;MQ=60;FQ=76;PV4=0.76,5.2e-21,1,1 GT:PL:GQ 0/1:103,0,255:99 chr1 28211650 . T C 50 . DP=8;VDB=0.0107;AF1=0.5;AC1=1;DP4=5,0,3,0;MQ=60;FQ=53;PV4=1,1,1,1 GT:PL:GQ 0/1:80,0,104:83 chr1 28212272 . G A 72 . DP=39;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,2,20,1;MQ=60;FQ=75;PV4=0.58,6.1e-17,1,1 GT:PL:GQ 0/1:102,0,221:99 chr1 28224312 . C T 27 . DP=4;VDB=0.0143;AF1=0.5;AC1=1;DP4=0,2,1,1;MQ=60;FQ=27.9;PV4=1,0.1,1,0.49 GT:PL:GQ 0/1:57,0,59:58 chr1 28261593 . T C 33 . DP=13;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,1,7,1;MQ=60;FQ=36;PV4=1,1.3e-09,1,0.1 GT:PL:GQ 0/1:63,0,96:66 chr1 28261658 . TG TGG 213 . INDEL;DP=33;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,3,13,3;MQ=60;FQ=176;PV4=1,1,1,0.27 GT:PL:GQ 0/1:251,0,211:99 chr1 28268706 . G A 168 . DP=41;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,25,14;MQ=58;FQ=-144 GT:PL:GQ 1/1:201,117,0:99 chr1 28268833 . C CG 171 . INDEL;DP=49;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,20,26;MQ=59;FQ=-173 GT:PL:GQ 1/1:212,138,0:99 chr1 28282292 . T C 113 . DP=49;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,2,21,5;MQ=60;FQ=116;PV4=0.43,7.9e-09,0.18,1 GT:PL:GQ 0/1:143,0,200:99 chr1 28282819 . T C 69 . DP=12;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,1,9;MQ=60;FQ=-57 GT:PL:GQ 1/1:102,30,0:57 chr1 28293712 . G A 23 . DP=16;VDB=0.0053;AF1=0.5;AC1=1;DP4=4,7,1,4;MQ=60;FQ=26;PV4=1,5.4e-06,1,1 GT:PL:GQ 0/1:53,0,239:56 chr1 28303971 . A G 98 . DP=38;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,8,4,24;MQ=60;FQ=101;PV4=0.64,2.9e-12,1,1 GT:PL:GQ 0/1:128,0,150:99 chr1 28304785 . T C 7.8 . DP=5;VDB=0.0005;AF1=0.5003;AC1=1;DP4=1,0,2,0;MQ=60;FQ=3.27;PV4=1,0.089,1,1 GT:PL:GQ 0/1:37,0,28:32 chr1 28319867 . C A 46 . DP=35;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,5,14,3;MQ=59;FQ=49;PV4=0.69,1.3e-19,1,0.35 GT:PL:GQ 0/1:76,0,255:79 chr1 28323718 . tg t 145 . INDEL;DP=29;VDB=0.0025;AF1=0.5;AC1=1;DP4=15,2,10,2;MQ=60;FQ=148;PV4=1,5.5e-06,1,1 GT:PL:GQ 0/1:183,0,238:99 chr1 28369213 . TAAAAA TAAAA 97.5 . INDEL;DP=112;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,38,8,45;MQ=60;FQ=99.5;PV4=0.32,1.4e-05,0.17,0.12 GT:PL:GQ 0/1:135,0,141:99 chr1 28369279 . G A 215 . DP=25;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,18;MQ=60;FQ=-84 GT:PL:GQ 1/1:248,57,0:99 chr1 28369294 . T C 44 . DP=11;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,4,0,7;MQ=60;FQ=47;PV4=1,1.6e-07,1,0.14 GT:PL:GQ 0/1:74,0,94:77 chr1 28422847 . C T 127 . DP=69;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,62,7;MQ=45;FQ=-235 GT:PL:GQ 1/1:160,208,0:99 chr1 28527011 . A G 161 . DP=46;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,11,10,13;MQ=60;FQ=164;PV4=0.77,1e-19,1,0.034 GT:PL:GQ 0/1:191,0,255:99 chr1 28559574 . C G 131 . DP=43;VDB=0.0373;AF1=0.5;AC1=1;DP4=7,14,3,16;MQ=60;FQ=134;PV4=0.28,1.8e-05,1,1 GT:PL:GQ 0/1:161,0,255:99 chr1 28562676 . A G 91 . DP=35;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,1,17,2;MQ=59;FQ=94;PV4=1,1.3e-11,0.19,0.3 GT:PL:GQ 0/1:121,0,179:99 chr1 28563084 . C T 51 . DP=11;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,5,1,4;MQ=60;FQ=54;PV4=1,0.00012,1,1 GT:PL:GQ 0/1:81,0,135:84 chr1 28564252 . A G 49 . DP=56;VDB=0.0244;AF1=0.5;AC1=1;DP4=22,3,27,2;MQ=60;FQ=52;PV4=0.65,4e-26,1,0.4 GT:PL:GQ 0/1:79,0,248:82 chr1 28564279 . A G 91 . DP=86;VDB=0.0322;AF1=0.5;AC1=1;DP4=41,5,33,6;MQ=60;FQ=94;PV4=0.75,2.1e-40,0.14,1 GT:PL:GQ 0/1:121,0,255:99 chr1 28586376 . C G 38 . DP=13;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,3,3,2;MQ=58;FQ=41;PV4=1,1.8e-05,0.13,0.14 GT:PL:GQ 0/1:68,0,176:71 chr1 28696392 . C G 105 . DP=31;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,7,8,8;MQ=60;FQ=108;PV4=1,1e-07,1,1 GT:PL:GQ 0/1:135,0,231:99 chr1 28733993 . G T 69 . DP=40;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,17,10,8;MQ=60;FQ=72;PV4=0.024,4.5e-23,1,0.28 GT:PL:GQ 0/1:99,0,255:99 chr1 28800380 . C A 221 . DP=49;VDB=0.0384;AF1=0.5;AC1=1;DP4=11,19,10,8;MQ=60;FQ=223;PV4=0.24,0.0018,0.1,0.46 GT:PL:GQ 0/1:251,0,255:99 chr1 28817597 . A G 92 . DP=18;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,11,0,6;MQ=60;FQ=95;PV4=1,1,1,1 GT:PL:GQ 0/1:122,0,156:99 chr1 28861636 . G A 225 . DP=84;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,15,30,14;MQ=59;FQ=225;PV4=0.65,0.14,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 28904163 . A T 84 . DP=59;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,24,10,9;MQ=60;FQ=87;PV4=0.15,6.7e-19,0.089,0.44 GT:PL:GQ 0/1:114,0,255:99 chr1 28904164 . A G 92 . DP=59;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,24,10,12;MQ=59;FQ=95;PV4=0.4,5.5e-20,0.036,1 GT:PL:GQ 0/1:122,0,255:99 chr1 29063559 . A C 146 . DP=12;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,5,6;MQ=60;FQ=-60 GT:PL:GQ 1/1:179,33,0:63 chr1 29138975 . G T 173 . DP=19;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,15,4;MQ=60;FQ=-84 GT:PL:GQ 1/1:206,57,0:99 chr1 29139140 . C G 84 . DP=21;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,5,6,5;MQ=60;FQ=87;PV4=0.65,8.4e-06,1,1 GT:PL:GQ 0/1:114,0,157:99 chr1 29189597 . C T 222 . DP=64;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,32,29;MQ=60;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr1 29345009 . C CTT 144 . INDEL;DP=5;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:184,12,0:21 chr1 29439016 . T A 222 . DP=57;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,19,38;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr1 29475341 . C T 112 . DP=11;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,8;MQ=60;FQ=-57 GT:PL:GQ 1/1:145,30,0:57 chr1 29475394 . C G 133 . DP=27;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,21,4;MQ=59;FQ=-102 GT:PL:GQ 1/1:166,75,0:99 chr1 29475648 . T G 85 . DP=38;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,35;MQ=59;FQ=-135 GT:PL:GQ 1/1:118,108,0:99 chr1 29529699 . T C 222 . DP=64;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,37,25;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 29542435 . C G 52 . DP=8;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:85,24,0:45 chr1 29542637 . A G 204 . DP=25;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,15;MQ=58;FQ=-99 GT:PL:GQ 1/1:237,72,0:99 chr1 29557224 . C T 185 . DP=25;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,7,15;MQ=60;FQ=-93 GT:PL:GQ 1/1:218,66,0:99 chr1 29609502 . TGGGGGG TGGGGG 49.5 . INDEL;DP=24;VDB=0.0216;AF1=0.5001;AC1=1;DP4=1,6,3,11;MQ=59;FQ=3.25;PV4=1,0.0018,0.25,1 GT:PL:GQ 0/1:87,0,35:38 chr1 29609536 . G A 71 . DP=11;VDB=0.0053;AF1=0.5001;AC1=1;DP4=0,2,2,7;MQ=60;FQ=7.8;PV4=1,0.0015,1,1 GT:PL:GQ 0/1:101,0,34:37 chr1 29630455 . C T 18.1 . DP=19;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,9,0,5;MQ=60;FQ=21;PV4=0.28,0.0081,1,1 GT:PL:GQ 0/1:48,0,223:51 chr1 29631236 . CT CTAT 217 . INDEL;DP=173;VDB=0.0380;AF1=0.5;AC1=1;DP4=36,45,42,42;MQ=60;FQ=217;PV4=0.53,1,0.29,0.33 GT:PL:GQ 0/1:255,0,255:99 chr1 29631782 . C T 43.1 . DP=6;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:76,18,0:33 chr1 29631909 . A G 222 . DP=68;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,44,23;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr1 29842261 . A T 28.8 . DP=2;VDB=0.0141;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:60,6,0:10 chr1 31215364 . T C 130 . DP=114;VDB=0.0399;AF1=0.5;AC1=1;DP4=47,25,23,14;MQ=60;FQ=133;PV4=0.83,8.2e-30,0.082,0.41 GT:PL:GQ 0/1:160,0,255:99 chr1 31230668 . C T 46 . DP=17;VDB=0.0025;AF1=0.5;AC1=1;DP4=1,9,1,6;MQ=60;FQ=49;PV4=1,0.00056,1,1 GT:PL:GQ 0/1:76,0,182:79 chr1 31346199 . G A 151 . DP=35;VDB=0.0384;AF1=0.5;AC1=1;DP4=7,15,4,8;MQ=59;FQ=154;PV4=1,0.044,1,0.11 GT:PL:GQ 0/1:181,0,255:99 chr1 31349647 . C T 106 . DP=18;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,3,0,7;MQ=60;FQ=109;PV4=0.026,1,1,1 GT:PL:GQ 0/1:136,0,184:99 chr1 31350122 . T G 51 . DP=27;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,14,3,7;MQ=60;FQ=54;PV4=0.64,6.9e-12,1,1 GT:PL:GQ 0/1:81,0,242:84 chr1 31351513 . G A 142 . DP=58;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,16,16,12;MQ=59;FQ=145;PV4=0.42,4.9e-17,0.28,1 GT:PL:GQ 0/1:172,0,255:99 chr1 31409726 . CCT C 110 . INDEL;DP=8;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,3,1,4;MQ=60;FQ=69.5;PV4=1,0.011,1,0.096 GT:PL:GQ 0/1:148,0,104:99 chr1 31418119 . C T 55 . DP=45;VDB=0.0014;AF1=0.5;AC1=1;DP4=20,1,23,0;MQ=60;FQ=58;PV4=0.48,1.3e-17,1,1 GT:PL:GQ 0/1:85,0,210:88 chr1 31426815 . A G 129 . DP=27;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,16,1,9;MQ=59;FQ=132;PV4=1,0.27,0.099,1 GT:PL:GQ 0/1:159,0,211:99 chr1 31440921 . G A 13 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr1 31445932 . C G 97.3 . DP=5;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,5,0;MQ=55;FQ=-42 GT:PL:GQ 1/1:130,15,0:27 chr1 31478638 . Aagagagagagagagagagagagagagagagaga Aagagagagagagagagagagagagaga,Aagagagagagagagagagagaga 117 . INDEL;DP=13;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,12,1;MQ=36;FQ=-55.5 GT:PL:GQ 1/1:255,119,98,169,0,151:39 chr1 31501755 . T C 31 . DP=70;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,34,1,32;MQ=59;FQ=34;PV4=1,8.3e-38,1,1 GT:PL:GQ 0/1:61,0,218:64 chr1 31538662 . G A 26 . DP=18;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,7,0,9;MQ=60;FQ=29;PV4=1,1.1e-07,1,0.4 GT:PL:GQ 0/1:56,0,132:59 chr1 31661148 . C T 49 . DP=16;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,7,0,8;MQ=60;FQ=52;PV4=1,5.3e-09,1,1 GT:PL:GQ 0/1:79,0,169:82 chr1 31732892 . G A 129 . DP=50;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,13,9,11;MQ=60;FQ=132;PV4=0.56,1.4e-16,0.11,1 GT:PL:GQ 0/1:159,0,255:99 chr1 31733926 . A G 118 . DP=6;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:151,18,0:33 chr1 31740668 . C T 173 . DP=80;VDB=0.0345;AF1=0.5;AC1=1;DP4=27,4,37,11;MQ=60;FQ=176;PV4=0.38,1.6e-17,1,0.17 GT:PL:GQ 0/1:203,0,255:99 chr1 31754367 . T C 172 . DP=105;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,29,22,34;MQ=60;FQ=175;PV4=0.84,1.9e-41,1,1 GT:PL:GQ 0/1:202,0,255:99 chr1 31761989 . G A 63 . DP=21;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,20,0;MQ=59;FQ=-87 GT:PL:GQ 1/1:96,60,0:99 chr1 31762374 . C T 33 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:65,9,0:16 chr1 31764713 . CAAGAA CAAGAAGAA 31.5 . INDEL;DP=8;VDB=0.0006;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=47;FQ=34.5;PV4=1,1,0,0.19 GT:PL:GQ 0/1:69,0,165:72 chr1 31764930 . T C 93 . DP=9;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,8;MQ=49;FQ=-54 GT:PL:GQ 1/1:126,27,0:51 chr1 31792141 . A G 101 . DP=7;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:134,18,0:33 chr1 31819407 . A C 15.1 . DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:47,9,0:14 chr1 31821932 . taa ta 35.5 . INDEL;DP=5;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=24.3;PV4=1,0.00057,1,0.25 GT:PL:GQ 0/1:73,0,59:62 chr1 31840426 . C G 11.3 . DP=7;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=60;FQ=13.9;PV4=1,0.004,1,1 GT:PL:GQ 0/1:41,0,52:43 chr1 31882582 . GGCC GGCCTCAGCC 114 . INDEL;DP=21;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,3,6,1;MQ=54;FQ=117;PV4=1,1,1.9e-05,1 GT:PL:GQ 0/1:152,0,255:99 chr1 31883295 . T C 10.4 . DP=14;VDB=0.0174;AF1=0.5;AC1=1;DP4=6,3,2,2;MQ=60;FQ=13.2;PV4=1,3e-05,1,0.42 GT:PL:GQ 0/1:40,0,186:42 chr1 31886833 . T C 79 . DP=17;VDB=0.0099;AF1=0.5;AC1=1;DP4=5,4,6,2;MQ=60;FQ=82;PV4=0.62,0.007,1,0.088 GT:PL:GQ 0/1:109,0,185:99 chr1 31897493 . A G 39.1 . DP=7;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,7,0;MQ=57;FQ=-48 GT:PL:GQ 1/1:72,21,0:39 chr1 31897773 . C T 40 . DP=15;VDB=0.0099;AF1=0.5;AC1=1;DP4=2,4,0,9;MQ=60;FQ=43;PV4=0.14,1e-07,1,1 GT:PL:GQ 0/1:70,0,144:73 chr1 31898132 . T C 78 . DP=64;VDB=0.0392;AF1=0.5;AC1=1;DP4=27,11,19,5;MQ=60;FQ=81;PV4=0.56,3.6e-14,1,0.34 GT:PL:GQ 0/1:108,0,255:99 chr1 31898162 . C T 136 . DP=88;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,24,21,16;MQ=59;FQ=139;PV4=0.52,1.6e-20,1,1 GT:PL:GQ 0/1:166,0,255:99 chr1 31898234 . T C 88 . DP=95;VDB=0.0298;AF1=0.5;AC1=1;DP4=21,30,21,23;MQ=60;FQ=91;PV4=0.54,3.2e-34,1,1 GT:PL:GQ 0/1:118,0,255:99 chr1 31898279 . A C 178 . DP=55;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,19,11,15;MQ=60;FQ=181;PV4=0.4,1.9e-07,1,0.4 GT:PL:GQ 0/1:208,0,255:99 chr1 31898687 . C T 24 . DP=13;VDB=0.0059;AF1=0.5;AC1=1;DP4=5,4,3,1;MQ=60;FQ=27;PV4=1,0.0054,1,0.089 GT:PL:GQ 0/1:54,0,209:57 chr1 31899684 . A T 138 . DP=18;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81 GT:PL:GQ 1/1:171,54,0:99 chr1 31902279 . G A 138 . DP=113;VDB=0.0365;AF1=0.5;AC1=1;DP4=34,24,29,21;MQ=60;FQ=141;PV4=1,7.6e-36,1,1 GT:PL:GQ 0/1:168,0,255:99 chr1 31902418 . A G 206 . DP=65;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,30,3,23;MQ=59;FQ=209;PV4=0.5,0.23,1,1 GT:PL:GQ 0/1:236,0,255:99 chr1 31905889 . ACAGCAGCAGCAGCAG ACAGCAGCAGCAGCAGCAG 214 . INDEL;DP=42;VDB=0.0271;AF1=1;AC1=2;DP4=0,1,31,9;MQ=58;FQ=-124;PV4=0.24,1,0.37,0.25 GT:PL:GQ 1/1:255,89,0:99 chr1 31906882 . A G 131 . DP=35;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,27,4;MQ=59;FQ=-120 GT:PL:GQ 1/1:164,93,0:99 chr1 31907102 . A G 147 . DP=19;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,3,15;MQ=60;FQ=-81 GT:PL:GQ 1/1:180,54,0:99 chr1 31971701 . GCCCC GCCC 3.25 . INDEL;DP=9;VDB=0.0004;AF1=0.5;AC1=1;DP4=6,0,3,0;MQ=60;FQ=5.09;PV4=1,9.5e-09,1,1 GT:PL:GQ 0/1:38,0,75:37 chr1 31973122 . GTGGAGTCTGTCTG GTG 108 . INDEL;DP=23;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,4,4,5;MQ=49;FQ=111;PV4=0.65,0.18,0,1 GT:PL:GQ 0/1:146,0,255:99 chr1 31973215 . G A 125 . DP=24;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,5,5,4;MQ=57;FQ=128;PV4=1,0.017,0.0098,0.35 GT:PL:GQ 0/1:155,0,255:99 chr1 31973266 . G A 90 . DP=32;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,5,5,7;MQ=57;FQ=93;PV4=0.13,5.2e-10,0.0023,0.45 GT:PL:GQ 0/1:120,0,255:99 chr1 31973348 . A C 30 . DP=43;VDB=0.0325;AF1=0.5;AC1=1;DP4=13,16,6,5;MQ=59;FQ=33;PV4=0.73,1.3e-09,0.053,1 GT:PL:GQ 0/1:60,0,255:63 chr1 31973409 . G A 202 . DP=35;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,15,11,4;MQ=60;FQ=205;PV4=0.0068,0.042,1,1 GT:PL:GQ 0/1:232,0,255:99 chr1 31973440 . G A 142 . DP=26;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,10,7,6;MQ=60;FQ=145;PV4=0.23,2.2e-08,1,0.45 GT:PL:GQ 0/1:172,0,238:99 chr1 31973481 . C T 43 . DP=15;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,6,0,7;MQ=60;FQ=46;PV4=0.47,2.8e-07,1,1 GT:PL:GQ 0/1:73,0,176:76 chr1 32044641 . G A 50 . DP=7;VDB=0.0053;AF1=1;AC1=2;DP4=1,0,6,0;MQ=52;FQ=-36;PV4=1,0.00028,1,0.19 GT:PL:GQ 1/1:82,9,0:16 chr1 32084904 . C T 225 . DP=46;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,12,14,9;MQ=60;FQ=225;PV4=0.55,0.096,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 32092525 . A G 162 . DP=29;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,15,3,7;MQ=59;FQ=165;PV4=0.66,1,0.086,1 GT:PL:GQ 0/1:192,0,255:99 chr1 32092735 . T G 110 . DP=19;VDB=0.0066;AF1=0.5;AC1=1;DP4=8,0,9,0;MQ=56;FQ=111;PV4=1,0.14,0.31,0.25 GT:PL:GQ 0/1:140,0,142:99 chr1 32092918 . TT TTCCT 217 . INDEL;DP=95;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,26,18,28;MQ=57;FQ=217;PV4=0.82,1,0.0019,0.23 GT:PL:GQ 0/1:255,0,255:99 chr1 32100551 . gaaaaa gaaaa 81.5 . INDEL;DP=50;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,11,4,25;MQ=60;FQ=45.5;PV4=0.41,7.7e-05,1,1 GT:PL:GQ 0/1:119,0,80:83 chr1 32119347 . Aacacacacacacacacacacacacacaca Aacacacacacacacacacacacaca 151 . INDEL;DP=12;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,4,4,3;MQ=58;FQ=76.5;PV4=0.19,1,0.24,0.26 GT:PL:GQ 0/1:189,0,111:99 chr1 32119431 . T C 48 . DP=22;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,3,3,4;MQ=58;FQ=51;PV4=0.14,9.8e-05,0.29,0.42 GT:PL:GQ 0/1:78,0,247:81 chr1 32127911 . C T 163 . DP=49;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,12,16,13;MQ=60;FQ=166;PV4=0.25,8.1e-13,0.21,0.44 GT:PL:GQ 0/1:193,0,255:99 chr1 32127953 . G A 225 . DP=36;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,7,6,14;MQ=59;FQ=198;PV4=0.46,0.35,0.21,1 GT:PL:GQ 0/1:255,0,225:99 chr1 32131163 . C G 149 . DP=126;VDB=0.0393;AF1=0.5;AC1=1;DP4=27,41,24,29;MQ=60;FQ=152;PV4=0.58,2.8e-32,1,0.11 GT:PL:GQ 0/1:179,0,255:99 chr1 32133737 . C T 77 . DP=19;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,0,8,2;MQ=59;FQ=77.9;PV4=0.5,8.8e-08,1,1 GT:PL:GQ 0/1:107,0,109:99 chr1 32134491 . C G 25 . DP=25;VDB=0.0343;AF1=0.5;AC1=1;DP4=3,13,1,7;MQ=60;FQ=28;PV4=1,7e-07,1,1 GT:PL:GQ 0/1:55,0,234:58 chr1 32136168 . G C,T 85 . DP=39;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,26,9;MQ=59;FQ=-91 GT:PL:GQ 1/1:231,177,113,148,0,106:99 chr1 32136398 . G A 80 . DP=27;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,12,2,8;MQ=60;FQ=83;PV4=1,6.3e-06,1,0.45 GT:PL:GQ 0/1:110,0,247:99 chr1 32140733 . C T 27 . DP=20;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,8,4,4;MQ=60;FQ=30;PV4=0.65,1.5e-11,1,1 GT:PL:GQ 0/1:57,0,246:60 chr1 32145009 . C T 222 . DP=28;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,26,2;MQ=59;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 32148571 . A G 212 . DP=63;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,41,20;MQ=59;FQ=-211 GT:PL:GQ 1/1:245,184,0:99 chr1 32150411 . C G 117 . DP=34;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,7,9,7;MQ=60;FQ=120;PV4=1,4.7e-13,1,0.1 GT:PL:GQ 0/1:147,0,255:99 chr1 32156869 . A T 222 . DP=103;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,55,41;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 32156940 . C A 122 . DP=108;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,34,22,25;MQ=60;FQ=125;PV4=0.22,4e-29,1,1 GT:PL:GQ 0/1:152,0,255:99 chr1 32157009 . G T 127 . DP=77;VDB=0.0400;AF1=0.5;AC1=1;DP4=19,16,15,21;MQ=60;FQ=130;PV4=0.35,4.2e-20,1,0.39 GT:PL:GQ 0/1:157,0,255:99 chr1 32158304 . A G 225 . DP=82;VDB=0.0393;AF1=0.5;AC1=1;DP4=22,22,15,20;MQ=59;FQ=225;PV4=0.65,0.35,1,0.054 GT:PL:GQ 0/1:255,0,255:99 chr1 32158374 . T C 225 . DP=53;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,17,7,16;MQ=60;FQ=225;PV4=1,1,1,0.39 GT:PL:GQ 0/1:255,0,255:99 chr1 32159588 . A C 40 . DP=15;VDB=0.0393;AF1=0.5;AC1=1;DP4=4,2,4,4;MQ=60;FQ=43;PV4=0.63,1.8e-05,1,1 GT:PL:GQ 0/1:70,0,132:73 chr1 32164206 . T G 138 . DP=41;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,14,5,18;MQ=59;FQ=141;PV4=1,1.7e-10,1,0.25 GT:PL:GQ 0/1:168,0,235:99 chr1 32165495 . G T 158 . DP=61;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,11,16,9;MQ=60;FQ=161;PV4=0.79,6.7e-11,1,1 GT:PL:GQ 0/1:188,0,255:99 chr1 32167526 . G C 11.1 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr1 32193647 . T C 106 . DP=20;VDB=0.0393;AF1=0.5;AC1=1;DP4=5,4,8,3;MQ=60;FQ=109;PV4=0.64,2.2e-05,1,0.2 GT:PL:GQ 0/1:136,0,184:99 chr1 32196647 . C G 45 . DP=20;VDB=0.0359;AF1=0.5;AC1=1;DP4=3,8,2,6;MQ=60;FQ=48;PV4=1,6.2e-08,1,0.13 GT:PL:GQ 0/1:75,0,214:78 chr1 32203163 . C G 126 . DP=48;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,9,12,15;MQ=60;FQ=129;PV4=0.56,1.2e-20,0.2,0.48 GT:PL:GQ 0/1:156,0,255:99 chr1 32204035 . C T 225 . DP=63;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,15,25,10;MQ=60;FQ=225;PV4=0.04,0.18,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 32207581 . T G 100 . DP=76;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,29,15,15;MQ=60;FQ=103;PV4=0.14,1.2e-21,1,0.4 GT:PL:GQ 0/1:130,0,255:99 chr1 32221913 . G A 169 . DP=76;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,19,20,23;MQ=60;FQ=172;PV4=0.65,8.5e-14,0.2,0.43 GT:PL:GQ 0/1:199,0,255:99 chr1 32266026 . A G 222 . DP=70;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,45,22;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr1 32280610 . T C 225 . DP=70;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,24,13,19;MQ=60;FQ=225;PV4=0.44,1,1,0.2 GT:PL:GQ 0/1:255,0,255:99 chr1 32378540 . G T 117 . DP=38;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,4,15,10;MQ=60;FQ=120;PV4=1,7.5e-19,1,1 GT:PL:GQ 0/1:147,0,198:99 chr1 32379996 . CTATTTA CTA 217 . INDEL;DP=45;VDB=0.0384;AF1=0.5;AC1=1;DP4=13,11,10,9;MQ=56;FQ=217;PV4=1,0.00055,0.0027,1 GT:PL:GQ 0/1:255,0,255:99 chr1 32658062 . GGTG GGTGTG 98.5 . INDEL;DP=9;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,2,0,6;MQ=60;FQ=52.5;PV4=0.33,1,1,1 GT:PL:GQ 0/1:136,0,87:90 chr1 32660473 . C T 198 . DP=27;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,4,11,3;MQ=60;FQ=201;PV4=0.68,0.13,1,0.058 GT:PL:GQ 0/1:228,0,244:99 chr1 32696776 . C T 66 . DP=26;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,7,1,14;MQ=59;FQ=69;PV4=0.13,1.1e-06,0.2,0.085 GT:PL:GQ 0/1:96,0,205:99 chr1 32860161 . T C,A 57 . DP=23;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,20;MQ=60;FQ=-84 GT:PL:GQ 1/1:90,57,0,76,30,73:99 chr1 33065947 . G C 222 . DP=159;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,80,74;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 33117071 . T G 48.1 . DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,6;MQ=57;FQ=-45 GT:PL:GQ 1/1:81,18,0:33 chr1 33133968 . T C 167 . DP=69;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,41,26;MQ=60;FQ=-229 GT:PL:GQ 1/1:200,202,0:99 chr1 33134774 . A C 222 . DP=46;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,11,31;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 33134989 . A G 24 . DP=5;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:56,9,0:15 chr1 33160878 . C T 216 . DP=110;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,59,40;MQ=60;FQ=-282 GT:PL:GQ 1/1:249,255,0:99 chr1 33161212 . T C 222 . DP=172;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,101,68;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 33231380 . T G 136 . DP=45;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,8,14,9;MQ=59;FQ=139;PV4=0.76,2e-10,1,1 GT:PL:GQ 0/1:166,0,251:99 chr1 33231403 . G T 225 . DP=44;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,6,11,14;MQ=59;FQ=208;PV4=0.34,0.0056,1,0.4 GT:PL:GQ 0/1:255,0,235:99 chr1 33233323 . A G 124 . DP=21;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,18,3;MQ=60;FQ=-90 GT:PL:GQ 1/1:157,63,0:99 chr1 33234136 . T C 90.5 . DP=4;VDB=0.0161;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:123,12,0:21 chr1 33234153 . G A 40 . DP=8;VDB=0.0398;AF1=0.5;AC1=1;DP4=1,2,4,0;MQ=60;FQ=42.8;PV4=0.14,0.11,1,1 GT:PL:GQ 0/1:70,0,84:73 chr1 33235626 . G A 183 . DP=65;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,15,17,15;MQ=60;FQ=186;PV4=1,1.5e-13,1,1 GT:PL:GQ 0/1:213,0,255:99 chr1 33252099 . TCACATGCATGACTATTCCTAGCCCACATGCATGACTATT TCACATGCATGACTATT 81.5 . INDEL;DP=91;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,37,1,14;MQ=54;FQ=84.5;PV4=1,0.17,6.4e-15,1 GT:PL:GQ 0/1:119,0,255:99 chr1 33256884 . C A 120 . DP=40;VDB=0.0373;AF1=0.5;AC1=1;DP4=8,10,3,18;MQ=60;FQ=123;PV4=0.072,1.5e-08,1,0.4 GT:PL:GQ 0/1:150,0,255:99 chr1 33276424 . G A 222 . DP=49;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,35,13;MQ=59;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 33293748 . T C 7.59 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr1 33318561 . T C 66 . DP=9;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:99,27,0:51 chr1 33318634 . G A 222 . DP=25;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,15,7;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 33330432 . A G 115 . DP=11;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,7;MQ=60;FQ=-57 GT:PL:GQ 1/1:148,30,0:57 chr1 33409551 . C T 130 . DP=34;VDB=0.0099;AF1=0.5;AC1=1;DP4=16,0,17,0;MQ=60;FQ=133;PV4=1,0.0032,1,0.14 GT:PL:GQ 0/1:160,0,176:99 chr1 33409693 . G A 225 . DP=91;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,28,13,30;MQ=60;FQ=225;PV4=0.51,7e-05,1,0.21 GT:PL:GQ 0/1:255,0,255:99 chr1 33485789 . Aacacacacacacacacacacacacacacacacacacacaca Aacacacacacacacacacacacacacacacaca,Aacacacacacacacacacacacacacaca,Aacacacacacacacacacacacacaca 117 . INDEL;DP=48;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,0,14;MQ=32;FQ=-67.5 GT:PL:GQ 1/1:173,48,15,144,0,138,159,23,125,156:63 chr1 33497070 . G A 71.5 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,4,0;MQ=54;FQ=-39 GT:PL:GQ 1/1:104,12,0:21 chr1 33560338 . A G 222 . DP=27;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,20;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 33631069 . C A 43 . DP=8;VDB=0.0333;AF1=0.5;AC1=1;DP4=4,0,3,1;MQ=60;FQ=45.9;PV4=1,0.064,1,1 GT:PL:GQ 0/1:73,0,88:76 chr1 33641932 . A G 212 . DP=48;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,24,23;MQ=60;FQ=-168 GT:PL:GQ 1/1:245,141,0:99 chr1 33646950 . A G 90 . DP=34;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,8,1,15;MQ=60;FQ=93;PV4=0.015,2e-13,1,1 GT:PL:GQ 0/1:120,0,255:99 chr1 33741615 . T A 222 . DP=33;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,31,2;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 33760743 . T C 153 . DP=59;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,50,7;MQ=60;FQ=-199 GT:PL:GQ 1/1:186,172,0:99 chr1 33764617 . C T 57 . DP=50;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,19,4,15;MQ=59;FQ=60;PV4=0.35,9.3e-17,1,1 GT:PL:GQ 0/1:87,0,255:90 chr1 33772792 . C T 225 . DP=63;VDB=0.0384;AF1=0.5;AC1=1;DP4=11,26,11,13;MQ=60;FQ=225;PV4=0.28,0.097,1,0.11 GT:PL:GQ 0/1:255,0,255:99 chr1 33777524 . T C 90 . DP=9;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,7,1;MQ=57;FQ=-51 GT:PL:GQ 1/1:123,24,0:45 chr1 33778226 . G A 120 . DP=7;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,7;MQ=53;FQ=-48 GT:PL:GQ 1/1:153,21,0:39 chr1 33778591 . T C 65.1 . DP=6;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,5;MQ=56;FQ=-45 GT:PL:GQ 1/1:98,18,0:33 chr1 33832865 . A G 165 . DP=27;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,11,16;MQ=60;FQ=-108 GT:PL:GQ 1/1:198,81,0:99 chr1 33836796 . C G 170 . DP=8;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,2,6;MQ=60;FQ=-51 GT:PL:GQ 1/1:203,24,0:45 chr1 33957130 . C A 188 . DP=50;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,2,20,16;MQ=60;FQ=140;PV4=0.095,1.7e-10,1,1 GT:PL:GQ 0/1:218,0,167:99 chr1 33957152 . T G 177 . DP=67;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,37,23;MQ=59;FQ=-208 GT:PL:GQ 1/1:210,181,0:99 chr1 33960062 . A G 222 . DP=104;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,49,51;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 33961147 . T G 130 . DP=9;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:163,27,0:51 chr1 33985353 . C G 222 . DP=54;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,31,20;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 34008297 . A G 43 . DP=11;VDB=0.0019;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=60;FQ=46;PV4=1,6.4e-06,1,1 GT:PL:GQ 0/1:73,0,113:76 chr1 34038214 . T C 223 . DP=41;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,3,18,4;MQ=59;FQ=210;PV4=1,0.27,0.099,1 GT:PL:GQ 0/1:253,0,237:99 chr1 34038413 . A C 34 . DP=6;VDB=0.0161;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=26.6;PV4=1,0.27,1,1 GT:PL:GQ 0/1:64,0,54:57 chr1 34043169 . TCCCCCCC TCCCCCC 54.5 . INDEL;DP=17;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,11;MQ=60;FQ=-73.5 GT:PL:GQ 1/1:95,39,0:75 chr1 34052305 . C T 128 . DP=12;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,4,1,7;MQ=60;FQ=62;PV4=1,0.18,1,1 GT:PL:GQ 0/1:158,0,89:92 chr1 34071434 . C T 83 . DP=12;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,2,4,3;MQ=60;FQ=85.8;PV4=1,2e-05,1,0.12 GT:PL:GQ 0/1:113,0,126:99 chr1 34071525 . C T 61 . DP=18;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,4,5,3;MQ=60;FQ=64;PV4=0.62,0.00031,1,0.31 GT:PL:GQ 0/1:91,0,156:94 chr1 34158472 . C T 130 . DP=44;VDB=0.0164;AF1=0.5;AC1=1;DP4=21,3,14,5;MQ=60;FQ=133;PV4=0.43,1e-10,1,0.39 GT:PL:GQ 0/1:160,0,255:99 chr1 34158482 . C T 118 . DP=48;VDB=0.0164;AF1=0.5;AC1=1;DP4=23,3,15,5;MQ=60;FQ=121;PV4=0.27,7.5e-10,1,1 GT:PL:GQ 0/1:148,0,245:99 chr1 34189917 . C T 222 . DP=15;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,3,11;MQ=60;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr1 34189957 . AGGGG AGGG 84.6 . INDEL;DP=7;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,3,3;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:125,18,0:33 chr1 34270498 . G A 225 . DP=60;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,24,11,20;MQ=59;FQ=225;PV4=0.078,0.0012,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 34285342 . G A 57 . DP=19;VDB=0.0384;AF1=0.5;AC1=1;DP4=7,3,4,4;MQ=60;FQ=60;PV4=0.63,0.00011,1,0.4 GT:PL:GQ 0/1:87,0,186:90 chr1 34285381 . C T 55 . DP=30;VDB=0.0099;AF1=0.5;AC1=1;DP4=13,6,6,5;MQ=60;FQ=58;PV4=0.7,9.9e-09,1,1 GT:PL:GQ 0/1:85,0,255:88 chr1 34329897 . T C 222 . DP=74;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,51,20;MQ=60;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr1 34330067 . A C 190 . DP=113;VDB=0.0345;AF1=0.5;AC1=1;DP4=29,23,29,28;MQ=60;FQ=193;PV4=0.7,7.3e-26,1,1 GT:PL:GQ 0/1:220,0,255:99 chr1 34684463 . G A 48 . DP=11;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,2,2,6;MQ=60;FQ=48.5;PV4=1,6.9e-06,1,0.05 GT:PL:GQ 0/1:78,0,79:78 chr1 35135315 . C T 30 . DP=9;VDB=0.0384;AF1=0.5;AC1=1;DP4=1,3,1,4;MQ=57;FQ=32.9;PV4=1,0.0089,1,1 GT:PL:GQ 0/1:60,0,78:63 chr1 35183838 . A C 69 . DP=30;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,2;MQ=60;FQ=-84 GT:PL:GQ 1/1:102,57,0:99 chr1 35184033 . C T 222 . DP=37;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,32;MQ=59;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 35184084 . C T 197 . DP=13;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-63 GT:PL:GQ 1/1:230,36,0:69 chr1 35223345 . G A 87 . DP=75;VDB=0.0322;AF1=0.5;AC1=1;DP4=26,16,17,14;MQ=60;FQ=90;PV4=0.63,5.3e-33,0.12,1 GT:PL:GQ 0/1:117,0,255:99 chr1 35251161 . C T 43 . DP=16;VDB=0.0140;AF1=0.5;AC1=1;DP4=3,6,1,5;MQ=60;FQ=46;PV4=0.6,0.0022,1,0.11 GT:PL:GQ 0/1:73,0,174:76 chr1 35259961 . A G 222 . DP=120;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,60,53;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 35260769 . C T 124 . DP=85;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,27,14,31;MQ=58;FQ=127;PV4=0.81,1.4e-21,0.075,1 GT:PL:GQ 0/1:154,0,255:99 chr1 35260929 . G A 55.3 . DP=5;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:88,15,0:27 chr1 35332926 . G C 12.3 . DP=18;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,11,0,7;MQ=60;FQ=15.1;PV4=1,1.5e-06,1,1 GT:PL:GQ 0/1:42,0,159:44 chr1 35350573 . CTTT CTT 213 . INDEL;DP=36;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,11,9,10;MQ=60;FQ=201;PV4=0.52,0.31,1,0.3 GT:PL:GQ 0/1:251,0,236:99 chr1 35370419 . G A 94 . DP=17;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,4,3,3;MQ=60;FQ=97;PV4=1,0.0063,1,1 GT:PL:GQ 0/1:124,0,233:99 chr1 35561510 . G A 79 . DP=17;VDB=0.0393;AF1=0.5;AC1=1;DP4=3,5,4,5;MQ=60;FQ=82;PV4=1,9.8e-05,1,1 GT:PL:GQ 0/1:109,0,158:99 chr1 35562965 . G A 225 . DP=137;VDB=0.0380;AF1=0.5;AC1=1;DP4=43,27,40,24;MQ=59;FQ=225;PV4=1,1,0.034,0.38 GT:PL:GQ 0/1:255,0,255:99 chr1 35563206 . C G 51 . DP=50;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,27,0,20;MQ=60;FQ=54;PV4=1,4.8e-20,0.12,1 GT:PL:GQ 0/1:81,0,184:84 chr1 35576145 . C T 4.13 . DP=4;VDB=0.0153;AF1=0.4998;AC1=1;DP4=0,2,0,2;MQ=60;FQ=6.19;PV4=1,0.016,1,1 GT:PL:GQ 0/1:32,0,56:31 chr1 35925861 . C A 149 . DP=53;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,38,15;MQ=60;FQ=-187 GT:PL:GQ 1/1:182,160,0:99 chr1 35926150 . T C 65 . DP=23;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,17,0,6;MQ=58;FQ=68;PV4=1,0.41,1,0.091 GT:PL:GQ 0/1:95,0,178:98 chr1 35928179 . G A 61 . DP=17;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,2,5,2;MQ=60;FQ=64;PV4=1,0.00019,1,0.28 GT:PL:GQ 0/1:91,0,195:94 chr1 35944609 . T C 210 . DP=32;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,6,9,6;MQ=59;FQ=144;PV4=0.71,1,0.19,1 GT:PL:GQ 0/1:240,0,171:99 chr1 36202585 . G A 79 . DP=33;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,7,10,4;MQ=59;FQ=82;PV4=0.72,3.3e-15,0.13,1 GT:PL:GQ 0/1:109,0,255:99 chr1 36203659 . TTTCTTCTTCTTCTTC TTTCTTCTTCTTC 217 . INDEL;DP=41;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,14,0,17;MQ=57;FQ=217;PV4=0.47,0.00069,0.023,0.16 GT:PL:GQ 0/1:255,0,255:99 chr1 36205166 . A G 42 . DP=16;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,8,0,7;MQ=58;FQ=45;PV4=1,3.2e-07,0.15,0.25 GT:PL:GQ 0/1:72,0,145:75 chr1 36213712 . G T 170 . DP=41;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,4,35;MQ=59;FQ=-144 GT:PL:GQ 1/1:203,117,0:99 chr1 36216835 . C T 36.8 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:68,6,0:10 chr1 36225948 . T C 142 . DP=127;VDB=0.0365;AF1=0.5;AC1=1;DP4=52,21,34,18;MQ=60;FQ=145;PV4=0.56,3.8e-32,0.12,0.44 GT:PL:GQ 0/1:172,0,255:99 chr1 36291750 . G A 62 . DP=28;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,16,1,10;MQ=59;FQ=65;PV4=0.41,4e-13,0.12,1 GT:PL:GQ 0/1:92,0,182:95 chr1 36292258 . A G 60 . DP=26;VDB=0.0033;AF1=0.5;AC1=1;DP4=12,0,14,0;MQ=60;FQ=63;PV4=1,1.6e-11,1,1 GT:PL:GQ 0/1:90,0,160:93 chr1 36316418 . caaaaaaaaaa cAaaaaaaaaaa 8.17 . INDEL;DP=35;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,20,3;MQ=57;FQ=-104 GT:PL:GQ 1/1:48,69,0:63 chr1 36316571 . A C 132 . DP=46;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,19,5,17;MQ=57;FQ=135;PV4=1,2.5e-14,0.47,1 GT:PL:GQ 0/1:162,0,255:99 chr1 36367780 . A G 144 . DP=58;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,12,15,12;MQ=60;FQ=147;PV4=1,2.3e-13,1,1 GT:PL:GQ 0/1:174,0,255:99 chr1 36448130 . A G 68 . DP=16;VDB=0.0033;AF1=0.5;AC1=1;DP4=4,1,9,1;MQ=60;FQ=71;PV4=1,7.4e-08,1,0.35 GT:PL:GQ 0/1:98,0,122:99 chr1 36553673 . A G 225 . DP=39;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,8,15,7;MQ=59;FQ=225;PV4=0.32,0.13,0.2,1 GT:PL:GQ 0/1:255,0,255:99 chr1 36556779 . caaaaaa caaaaa 12.7 . INDEL;DP=62;VDB=0.0244;AF1=0.5;AC1=1;DP4=34,5,16,5;MQ=59;FQ=15.4;PV4=0.3,1,1,1 GT:PL:GQ 0/1:50,0,64:52 chr1 36563158 . C A 7.81 . DP=5;VDB=0.0332;AF1=0.5025;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-7.85;PV4=1,0.00022,1,0.14 GT:PL:GQ 0/1:37,0,20:24 chr1 36565617 . G A 11.3 . DP=11;VDB=0.0126;AF1=0.5;AC1=1;DP4=6,1,2,1;MQ=60;FQ=14.2;PV4=1,6.3e-05,1,1 GT:PL:GQ 0/1:41,0,164:43 chr1 36602943 . C T 162 . DP=14;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,6,3,5;MQ=60;FQ=97;PV4=0.21,0.18,1,0.011 GT:PL:GQ 0/1:192,0,124:99 chr1 36645811 . T G 32 . DP=10;VDB=0.0082;AF1=0.5;AC1=1;DP4=4,2,3,1;MQ=60;FQ=35;PV4=1,0.00028,1,1 GT:PL:GQ 0/1:62,0,157:65 chr1 36752433 . C T 138 . DP=72;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,30,6,26;MQ=59;FQ=141;PV4=0.77,1.3e-20,0.22,1 GT:PL:GQ 0/1:168,0,255:99 chr1 36762396 . C T 64 . DP=13;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-63 GT:PL:GQ 1/1:97,36,0:69 chr1 36767400 . C T 139 . DP=20;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,10,2,6;MQ=60;FQ=142;PV4=1,1,1,1 GT:PL:GQ 0/1:169,0,214:99 chr1 36773074 . CTT C 185 . INDEL;DP=18;VDB=0.0081;AF1=0.5;AC1=1;DP4=10,0,8,0;MQ=60;FQ=188;PV4=1,1.6e-10,1,0.053 GT:PL:GQ 0/1:223,0,255:99 chr1 36773405 . T G 126 . DP=118;VDB=0.0380;AF1=0.5;AC1=1;DP4=23,35,14,41;MQ=60;FQ=129;PV4=0.11,2.4e-40,1,1 GT:PL:GQ 0/1:156,0,255:99 chr1 36773819 . C G 220 . DP=28;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,9,15;MQ=60;FQ=-99 GT:PL:GQ 1/1:253,72,0:99 chr1 36786435 . G A 145 . DP=36;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,6,12,10;MQ=60;FQ=148;PV4=0.72,5e-12,1,0.32 GT:PL:GQ 0/1:175,0,208:99 chr1 36788356 . A G 11.1 . DP=3;VDB=0.0077;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr1 36814473 . C T 155 . DP=41;VDB=0.0373;AF1=0.5;AC1=1;DP4=4,18,1,16;MQ=59;FQ=158;PV4=0.36,0.13,0.13,1 GT:PL:GQ 0/1:185,0,255:99 chr1 36820927 . G A 225 . DP=58;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,17,10,17;MQ=60;FQ=225;PV4=0.6,0.0054,1,0.26 GT:PL:GQ 0/1:255,0,255:99 chr1 36824321 . C T 89 . DP=34;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,2,17,3;MQ=60;FQ=92;PV4=1,2.8e-13,1,1 GT:PL:GQ 0/1:119,0,195:99 chr1 36859578 . G A 225 . DP=124;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,30,35,28;MQ=60;FQ=225;PV4=0.47,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 36883946 . T C 127 . DP=31;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,15,1,9;MQ=60;FQ=130;PV4=0.63,0.33,1,0.47 GT:PL:GQ 0/1:157,0,255:99 chr1 36886117 . C T 168 . DP=53;VDB=0.0298;AF1=0.5;AC1=1;DP4=18,4,21,10;MQ=60;FQ=171;PV4=0.35,7.8e-16,1,1 GT:PL:GQ 0/1:198,0,255:99 chr1 36887702 . C T 144 . DP=46;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,2,22,6;MQ=58;FQ=147;PV4=0.69,9.3e-17,1,1 GT:PL:GQ 0/1:174,0,212:99 chr1 36898067 . T C 114 . DP=41;VDB=0.0398;AF1=0.5;AC1=1;DP4=16,4,15,3;MQ=60;FQ=117;PV4=1,4.3e-05,1,0.12 GT:PL:GQ 0/1:144,0,255:99 chr1 36898332 . C T 24 . DP=8;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=60;FQ=27;PV4=1,5.3e-06,1,0.33 GT:PL:GQ 0/1:54,0,78:57 chr1 36921371 . G T 225 . DP=52;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,11,19,6;MQ=58;FQ=225;PV4=0.25,1,0.14,0.2 GT:PL:GQ 0/1:255,0,255:99 chr1 36921464 . GGCTGCTGCTGC GGCTGCTGCTGCTGC 217 . INDEL;DP=43;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,7,3,18;MQ=59;FQ=217;PV4=0.2,1,0.15,0.24 GT:PL:GQ 0/1:255,0,255:99 chr1 36926445 . C T 74 . DP=44;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,19,3,18;MQ=59;FQ=77;PV4=1,1.3e-18,1,1 GT:PL:GQ 0/1:104,0,231:99 chr1 36926961 . G A 42 . DP=69;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,21,16,9;MQ=59;FQ=45;PV4=0.33,3.1e-35,1,1 GT:PL:GQ 0/1:72,0,255:75 chr1 36927733 . G A 145 . DP=29;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,19,9;MQ=57;FQ=-111 GT:PL:GQ 1/1:178,84,0:99 chr1 36929673 . C T 127 . DP=78;VDB=0.0322;AF1=0.5;AC1=1;DP4=20,15,27,15;MQ=60;FQ=130;PV4=0.64,8.9e-35,0.18,1 GT:PL:GQ 0/1:157,0,255:99 chr1 36937059 . A G 111 . DP=37;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,8,10,9;MQ=60;FQ=114;PV4=1,1.6e-12,1,0.15 GT:PL:GQ 0/1:141,0,255:99 chr1 36937878 . C T 174 . DP=58;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,25,11,19;MQ=60;FQ=177;PV4=0.011,1.9e-20,1,1 GT:PL:GQ 0/1:204,0,237:99 chr1 37319137 . C T 6.98 . DP=4;VDB=0.0196;AF1=0.4999;AC1=1;DP4=2,0,2,0;MQ=54;FQ=9.49;PV4=1,0.083,0.21,1 GT:PL:GQ 0/1:36,0,56:37 chr1 37324683 . A C 48 . DP=25;VDB=0.0190;AF1=0.5;AC1=1;DP4=13,1,9,1;MQ=59;FQ=51;PV4=1,5e-07,0.12,0.075 GT:PL:GQ 0/1:78,0,198:81 chr1 37324935 . T C 4.77 . DP=13;VDB=0.0164;AF1=0.4999;AC1=1;DP4=0,6,0,6;MQ=58;FQ=6.99;PV4=1,8.3e-11,0.17,0.32 GT:PL:GQ 0/1:33,0,128:33 chr1 37325477 . A C 45 . DP=15;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,1,3,2;MQ=60;FQ=48;PV4=0.24,0.0019,1,0.32 GT:PL:GQ 0/1:75,0,178:78 chr1 37335458 . A G 164 . DP=14;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,13;MQ=58;FQ=-66 GT:PL:GQ 1/1:197,39,0:75 chr1 37335485 . A G 43.1 . DP=7;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:76,21,0:39 chr1 37335494 . G T 17.3 . DP=5;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:50,15,0:25 chr1 37626981 . T C 7.59 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr1 37627280 . C T 40 . DP=41;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,17,4,11;MQ=60;FQ=43;PV4=0.37,1.6e-19,1,0.21 GT:PL:GQ 0/1:70,0,239:73 chr1 37948212 . C G 222 . DP=181;VDB=0.0400;AF1=1;AC1=2;DP4=1,0,82,81;MQ=59;FQ=-282;PV4=1,1.3e-09,1,0.21 GT:PL:GQ 1/1:255,255,0:99 chr1 37959450 . T C 123 . DP=84;VDB=0.0298;AF1=0.5;AC1=1;DP4=16,36,10,21;MQ=59;FQ=126;PV4=1,1.1e-25,0.0014,1 GT:PL:GQ 0/1:153,0,255:99 chr1 37959470 . C G 225 . DP=63;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,30,6,21;MQ=58;FQ=225;PV4=0.75,0.3,0.0036,0.2 GT:PL:GQ 0/1:255,0,255:99 chr1 37961613 . A G 7.8 . DP=8;VDB=0.0204;AF1=0.5;AC1=1;DP4=1,4,0,3;MQ=60;FQ=10.4;PV4=1,0.017,1,0.28 GT:PL:GQ 0/1:37,0,116:39 chr1 38006359 . A G 107 . DP=40;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,12,6,19;MQ=59;FQ=110;PV4=0.69,7.8e-17,1,1 GT:PL:GQ 0/1:137,0,197:99 chr1 38018134 . C T 141 . DP=40;VDB=0.0053;AF1=0.5;AC1=1;DP4=21,0,18,0;MQ=60;FQ=144;PV4=1,0.37,1,0.26 GT:PL:GQ 0/1:171,0,182:99 chr1 38046920 . G T 225 . DP=84;VDB=0.0216;AF1=0.5;AC1=1;DP4=31,12,22,14;MQ=60;FQ=225;PV4=0.34,0.03,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr1 38049552 . C G 84 . DP=113;VDB=0.0322;AF1=0.5;AC1=1;DP4=20,47,14,29;MQ=59;FQ=87;PV4=0.83,2.8e-39,1,1 GT:PL:GQ 0/1:114,0,255:99 chr1 38049566 . G A 105 . DP=105;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,46,10,32;MQ=59;FQ=108;PV4=1,6.4e-38,1,1 GT:PL:GQ 0/1:135,0,255:99 chr1 38056595 . A G 11.4 . DP=5;VDB=0.0011;AF1=0.502;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-7;PV4=1,0.0021,1,0.18 GT:PL:GQ 0/1:41,0,21:25 chr1 38078300 . A G 121 . DP=13;VDB=0.0033;AF1=0.5;AC1=1;DP4=4,1,8,0;MQ=60;FQ=90;PV4=0.38,1,1,1 GT:PL:GQ 0/1:151,0,117:99 chr1 38079517 . T G 97 . DP=26;VDB=0.0325;AF1=0.5;AC1=1;DP4=8,6,4,6;MQ=60;FQ=100;PV4=0.68,4.7e-05,1,0.35 GT:PL:GQ 0/1:127,0,255:99 chr1 38148765 . A G 120 . DP=24;VDB=0.0384;AF1=0.5;AC1=1;DP4=10,2,10,0;MQ=60;FQ=123;PV4=0.48,0.4,1,0.31 GT:PL:GQ 0/1:150,0,214:99 chr1 38148833 . C A 225 . DP=54;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,7,20,10;MQ=60;FQ=225;PV4=0.78,0.21,1,0.14 GT:PL:GQ 0/1:255,0,255:99 chr1 38149193 . C T 33.2 . DP=6;VDB=0.0033;AF1=0.5207;AC1=1;DP4=1,0,0,5;MQ=56;FQ=-16.1;PV4=0.17,0.00086,1,1 GT:PL:GQ 0/1:63,0,11:14 chr1 38155265 . G C 40 . DP=20;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,3,6,1;MQ=59;FQ=43;PV4=1,1.5e-05,0.099,1 GT:PL:GQ 0/1:70,0,225:73 chr1 38155903 . C T 6.98 . DP=9;VDB=0.0008;AF1=0.4999;AC1=1;DP4=5,0,4,0;MQ=60;FQ=9.53;PV4=1,3.8e-08,1,0.25 GT:PL:GQ 0/1:36,0,120:37 chr1 38161694 . A G 94 . DP=44;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,16,3,15;MQ=59;FQ=97;PV4=0.19,1.5e-12,1,0.16 GT:PL:GQ 0/1:124,0,255:99 chr1 38164724 . C G 140 . DP=78;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,28,7,37;MQ=59;FQ=143;PV4=1,1.4e-27,0.23,1 GT:PL:GQ 0/1:170,0,255:99 chr1 38166022 . T C 225 . DP=20;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,3,5,8;MQ=60;FQ=133;PV4=0.64,0.32,1,0.33 GT:PL:GQ 0/1:255,0,160:99 chr1 38167361 . ACCC ACCCC 41.5 . INDEL;DP=19;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,2,6,1;MQ=60;FQ=44.5;PV4=1,1,1,1 GT:PL:GQ 0/1:79,0,120:82 chr1 38174185 . G T 59 . DP=17;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,6,0,10;MQ=60;FQ=62;PV4=1,9e-06,1,0.13 GT:PL:GQ 0/1:89,0,112:92 chr1 38184316 . T C 123 . DP=35;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,13,4,14;MQ=60;FQ=126;PV4=1,2.1e-12,1,1 GT:PL:GQ 0/1:153,0,238:99 chr1 38184470 . C G 32 . DP=13;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,6,2,3;MQ=60;FQ=35;PV4=0.52,0.00017,1,1 GT:PL:GQ 0/1:62,0,154:65 chr1 38186189 . C T 105 . DP=49;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,20,6,17;MQ=60;FQ=108;PV4=0.74,9.7e-15,1,0.41 GT:PL:GQ 0/1:135,0,255:99 chr1 38187447 . A G 161 . DP=30;VDB=0.0393;AF1=0.5;AC1=1;DP4=13,4,10,2;MQ=59;FQ=164;PV4=1,1,1,0.25 GT:PL:GQ 0/1:191,0,248:99 chr1 38187989 . T C 113 . DP=33;VDB=0.0398;AF1=0.5;AC1=1;DP4=1,19,0,12;MQ=59;FQ=116;PV4=1,0.087,0.1,1 GT:PL:GQ 0/1:143,0,214:99 chr1 38188841 . G A 155 . DP=90;VDB=0.0393;AF1=0.5;AC1=1;DP4=28,15,25,17;MQ=60;FQ=158;PV4=0.66,3.1e-34,1,1 GT:PL:GQ 0/1:185,0,255:99 chr1 38192604 . G A 10.4 . DP=7;VDB=0.0060;AF1=0.5;AC1=1;DP4=4,0,3,0;MQ=60;FQ=13.2;PV4=1,0.00043,1,0.24 GT:PL:GQ 0/1:40,0,100:42 chr1 38292160 . G A 48 . DP=8;VDB=0.0133;AF1=0.5;AC1=1;DP4=4,1,3,0;MQ=60;FQ=51;PV4=1,1,1,1 GT:PL:GQ 0/1:78,0,135:81 chr1 38293753 . G A 57 . DP=3;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:89,9,0:16 chr1 38293992 . C T 59 . DP=14;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,14;MQ=58;FQ=-69 GT:PL:GQ 1/1:92,42,0:81 chr1 38301250 . A G 17.1 . DP=8;VDB=0.0041;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=20.1;PV4=1,0.00051,1,0.38 GT:PL:GQ 0/1:47,0,97:50 chr1 38301476 . G A 172 . DP=37;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,13,3,15;MQ=60;FQ=175;PV4=1,0.074,1,1 GT:PL:GQ 0/1:202,0,219:99 chr1 38306356 . T C 18.1 . DP=6;VDB=0.0070;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=60;FQ=20.5;PV4=1,0.00015,1,1 GT:PL:GQ 0/1:48,0,57:50 chr1 38327982 . G T 196 . DP=46;VDB=0.0298;AF1=0.5;AC1=1;DP4=21,4,16,3;MQ=59;FQ=199;PV4=1,0.14,0.13,1 GT:PL:GQ 0/1:226,0,255:99 chr1 38328154 . gacacaca gacaca 217 . INDEL;DP=32;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,11,2,13;MQ=59;FQ=217;PV4=1,0.00012,0.19,0.27 GT:PL:GQ 0/1:255,0,255:99 chr1 38329999 . C G 158 . DP=104;VDB=0.0345;AF1=0.5;AC1=1;DP4=30,24,31,18;MQ=60;FQ=161;PV4=0.55,1.1e-29,0.15,1 GT:PL:GQ 0/1:188,0,255:99 chr1 38332074 . tctctcacac tc 108 . INDEL;DP=20;VDB=0.0140;AF1=0.5;AC1=1;DP4=6,0,7,0;MQ=48;FQ=95.4;PV4=1,1,0.22,0.47 GT:PL:GQ 0/1:146,0,130:99 chr1 38338795 . A G 225 . DP=118;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,32,21,46;MQ=59;FQ=225;PV4=0.84,0.23,0.068,0.39 GT:PL:GQ 0/1:255,0,255:99 chr1 38345896 . A C 50 . DP=7;VDB=0.0301;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=51.6;PV4=1,0.19,1,0.46 GT:PL:GQ 0/1:80,0,84:82 chr1 38348506 . G A 92 . DP=41;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,4,19,5;MQ=60;FQ=95;PV4=0.7,4.5e-17,1,1 GT:PL:GQ 0/1:122,0,231:99 chr1 38397341 . G A 79 . DP=33;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,3,14,2;MQ=59;FQ=82;PV4=1,1.5e-10,1,1 GT:PL:GQ 0/1:109,0,225:99 chr1 38397369 . C T 142 . DP=53;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,3,23,4;MQ=60;FQ=145;PV4=1,8.6e-12,1,1 GT:PL:GQ 0/1:172,0,234:99 chr1 38411275 . A G 20 . DP=9;VDB=0.0019;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=60;FQ=23;PV4=1,0.0037,1,1 GT:PL:GQ 0/1:50,0,68:53 chr1 38423853 . G C 94 . DP=12;VDB=0.0001;AF1=0.5;AC1=1;DP4=6,0,6,0;MQ=60;FQ=96;PV4=1,0.12,1,0.02 GT:PL:GQ 0/1:124,0,130:99 chr1 38425895 . T C 136 . DP=23;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,5,7,7;MQ=59;FQ=139;PV4=1,5.3e-07,0.22,1 GT:PL:GQ 0/1:166,0,184:99 chr1 38442547 . G A 161 . DP=152;VDB=0.0392;AF1=0.5;AC1=1;DP4=32,48,26,43;MQ=59;FQ=164;PV4=0.87,9.6e-62,0.43,0.49 GT:PL:GQ 0/1:191,0,255:99 chr1 38444749 . T C 104 . DP=16;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,4,3,8;MQ=60;FQ=88;PV4=1,4.3e-09,1,0.42 GT:PL:GQ 0/1:134,0,115:99 chr1 38450367 . A G 225 . DP=154;VDB=0.0345;AF1=0.5;AC1=1;DP4=43,47,29,26;MQ=60;FQ=225;PV4=0.61,1,0.36,1 GT:PL:GQ 0/1:255,0,255:99 chr1 38453576 . A C 152 . DP=74;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,27,10,27;MQ=60;FQ=155;PV4=1,1.1e-21,1,0.43 GT:PL:GQ 0/1:182,0,255:99 chr1 38462898 . T A 168 . DP=32;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,24,7;MQ=59;FQ=-120 GT:PL:GQ 1/1:201,93,0:99 chr1 38462905 . C G 106 . DP=36;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,16,6;MQ=59;FQ=-93 GT:PL:GQ 1/1:139,66,0:99 chr1 38463504 . C T 225 . DP=116;VDB=0.0322;AF1=0.5;AC1=1;DP4=27,26,35,26;MQ=60;FQ=225;PV4=0.57,0.23,0.18,1 GT:PL:GQ 0/1:255,0,255:99 chr1 38464639 . C G 222 . DP=125;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,72,48;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 39305403 . C T 149 . DP=65;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,23,6,28;MQ=59;FQ=152;PV4=0.76,4.9e-18,1,1 GT:PL:GQ 0/1:179,0,255:99 chr1 39330399 . G A 75 . DP=62;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,28,9,18;MQ=60;FQ=78;PV4=0.13,2.4e-36,0.14,1 GT:PL:GQ 0/1:105,0,255:99 chr1 39339449 . C T 133 . DP=28;VDB=0.0244;AF1=0.5;AC1=1;DP4=8,5,6,9;MQ=59;FQ=136;PV4=0.45,1.5e-11,1,1 GT:PL:GQ 0/1:163,0,248:99 chr1 39340282 . C T 225 . DP=76;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,14,30,10;MQ=60;FQ=225;PV4=0.14,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 39340862 . A G 100 . DP=136;VDB=0.0380;AF1=0.5;AC1=1;DP4=36,34,42,21;MQ=60;FQ=103;PV4=0.081,1.8e-56,0.15,1 GT:PL:GQ 0/1:130,0,255:99 chr1 39352271 . G T 225 . DP=131;VDB=0.0345;AF1=0.5;AC1=1;DP4=45,16,44,25;MQ=59;FQ=225;PV4=0.26,0.13,0.32,1 GT:PL:GQ 0/1:255,0,255:99 chr1 39352492 . G A 9.52 . DP=9;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,3,0,6;MQ=60;FQ=12.3;PV4=1,4.8e-08,1,1 GT:PL:GQ 0/1:39,0,75:41 chr1 39361569 . G A 94 . DP=14;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,1,6,0;MQ=60;FQ=97;PV4=1,1,1,1 GT:PL:GQ 0/1:124,0,156:99 chr1 39361615 . G A 181 . DP=24;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,3,6,5;MQ=60;FQ=184;PV4=0.4,0.094,1,0.32 GT:PL:GQ 0/1:211,0,229:99 chr1 39385086 . A C 148 . DP=7;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:181,21,0:39 chr1 39466626 . A G 181 . DP=16;VDB=0.0025;AF1=0.5;AC1=1;DP4=3,2,7,3;MQ=60;FQ=87;PV4=1,1,1,0.16 GT:PL:GQ 0/1:211,0,114:99 chr1 39466786 . C G 108 . DP=55;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,6,14,9;MQ=60;FQ=111;PV4=0.23,8.5e-19,1,1 GT:PL:GQ 0/1:138,0,255:99 chr1 39494687 . G A 40 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,14,1,8;MQ=55;FQ=43;PV4=0.39,9.3e-08,0.015,0.29 GT:PL:GQ 0/1:70,0,171:73 chr1 39550210 . C T 13.9 . DP=3;VDB=0.0030;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr1 39568765 . T C 24 . DP=9;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,4,0,5;MQ=60;FQ=27;PV4=1,0.0003,1,1 GT:PL:GQ 0/1:54,0,84:57 chr1 39717566 . T C 222 . DP=20;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,9,10;MQ=59;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr1 39748921 . G A 159 . DP=41;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,30,9;MQ=59;FQ=-144 GT:PL:GQ 1/1:192,117,0:99 chr1 39749884 . G T 8.64 . DP=66;VDB=0.0398;AF1=0.5;AC1=1;DP4=8,24,7,9;MQ=59;FQ=11.3;PV4=0.21,2.5e-25,1,1 GT:PL:GQ 0/1:38,0,255:40 chr1 39758993 . C G 52.5 . DP=4;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:85,12,0:21 chr1 39763242 . G A 222 . DP=89;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,65,21;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 39766055 . C T 129 . DP=26;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,2,20;MQ=59;FQ=-93 GT:PL:GQ 1/1:162,66,0:99 chr1 39806610 . C T 222 . DP=100;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,22,74;MQ=60;FQ=-282;PV4=1,5.9e-06,1,0.2 GT:PL:GQ 1/1:255,255,0:99 chr1 39812620 . G T 77 . DP=26;VDB=0.0244;AF1=1;AC1=2;DP4=0,1,19,4;MQ=58;FQ=-72;PV4=0.21,0.0012,1,1 GT:PL:GQ 1/1:110,45,0:87 chr1 39812822 . C A 207 . DP=25;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,8,15;MQ=60;FQ=-96 GT:PL:GQ 1/1:240,69,0:99 chr1 39927507 . G A 72 . DP=22;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,22,0;MQ=60;FQ=-93 GT:PL:GQ 1/1:105,66,0:99 chr1 39929240 . T C 164 . DP=73;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,57,11;MQ=59;FQ=-232 GT:PL:GQ 1/1:197,205,0:99 chr1 39934499 . G C 113 . DP=22;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,7,0,10;MQ=59;FQ=116;PV4=0.09,0.058,0.15,0.37 GT:PL:GQ 0/1:143,0,236:99 chr1 39957913 . A G 50 . DP=3;VDB=0.0089;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:82,9,0:16 chr1 39958080 . C G 38.3 . DP=5;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:71,15,0:27 chr1 39977343 . C T 16.3 . DP=4;VDB=0.0020;AF1=0.5207;AC1=1;DP4=1,0,3,0;MQ=23;FQ=-16.1;PV4=1,0.21,1,0.33 GT:PL:GQ 0/1:46,0,11:14 chr1 39988034 . C T 40 . DP=3;VDB=0.0215;AF1=1;AC1=2;DP4=0,0,3,0;MQ=29;FQ=-36 GT:PL:GQ 1/1:72,9,0:16 chr1 39988084 . G A 150 . DP=12;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,10,1;MQ=45;FQ=-60 GT:PL:GQ 1/1:183,33,0:63 chr1 40092089 . T C 160 . DP=8;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:193,24,0:45 chr1 40097136 . T C 40 . DP=16;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,0,9,0;MQ=60;FQ=43;PV4=1,2.4e-11,1,0.49 GT:PL:GQ 0/1:70,0,133:73 chr1 40098328 . T C 222 . DP=35;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,19,16;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 40125077 . T C 99 . DP=28;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,9,5,7;MQ=58;FQ=102;PV4=1,2.9e-10,0.42,0.033 GT:PL:GQ 0/1:129,0,255:99 chr1 40149642 . G T 156 . DP=28;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,6,7,7;MQ=60;FQ=159;PV4=1,4e-05,1,0.056 GT:PL:GQ 0/1:186,0,214:99 chr1 40149870 . C G 26 . DP=7;VDB=0.0332;AF1=0.5;AC1=1;DP4=0,2,1,3;MQ=56;FQ=13.1;PV4=1,0.0013,1,1 GT:PL:GQ 0/1:56,0,40:43 chr1 40149875 . C T 27.1 . DP=5;VDB=0.0332;AF1=0.5102;AC1=1;DP4=0,1,1,3;MQ=55;FQ=-13.2;PV4=1,0.00057,1,0.38 GT:PL:GQ 0/1:57,0,14:17 chr1 40150156 . G A 181 . DP=32;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,8,5,8;MQ=60;FQ=184;PV4=0.48,0.0069,1,0.4 GT:PL:GQ 0/1:211,0,255:99 chr1 40230336 . C G 27 . DP=39;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,8,7,2;MQ=35;FQ=30;PV4=1,1.7e-06,1,1 GT:PL:GQ 0/1:57,0,233:60 chr1 40313018 . C G 66 . DP=27;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,13,3,8;MQ=60;FQ=69;PV4=0.29,9.1e-11,1,1 GT:PL:GQ 0/1:96,0,189:99 chr1 40313849 . T C 147 . DP=44;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,14,5,24;MQ=60;FQ=140;PV4=0.65,6.7e-14,1,1 GT:PL:GQ 0/1:177,0,167:99 chr1 40319587 . A C 151 . DP=116;VDB=0.0244;AF1=0.5;AC1=1;DP4=42,19,35,19;MQ=60;FQ=154;PV4=0.69,1.4e-38,1,0.083 GT:PL:GQ 0/1:181,0,255:99 chr1 40349131 . G A 101 . DP=17;VDB=0.0164;AF1=0.5;AC1=1;DP4=3,5,4,5;MQ=60;FQ=104;PV4=1,0.00018,1,1 GT:PL:GQ 0/1:131,0,177:99 chr1 40363054 . G C 222 . DP=37;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,26,11;MQ=59;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 40367592 . A G 13 . DP=2;VDB=0.0120;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr1 40525993 . G C 35.1 . DP=6;VDB=0.0025;AF1=0.5163;AC1=1;DP4=0,1,0,5;MQ=60;FQ=-15.1;PV4=1,0.013,1,1 GT:PL:GQ 0/1:65,0,12:15 chr1 40526003 . T C 24 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:56,9,0:15 chr1 40533266 . T G 221 . DP=30;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,18,12;MQ=51;FQ=-117 GT:PL:GQ 1/1:254,90,0:99 chr1 40533287 . T G 222 . DP=27;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,12,13;MQ=49;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 40533315 . T G 181 . DP=27;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,6,20;MQ=46;FQ=-105 GT:PL:GQ 1/1:214,78,0:99 chr1 40533320 . T G 210 . DP=29;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,21;MQ=46;FQ=-111 GT:PL:GQ 1/1:243,84,0:99 chr1 40533326 . T G 222 . DP=29;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,8,20;MQ=45;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 40533347 . T G 222 . DP=22;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,17;MQ=51;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 40536074 . C CT 214 . INDEL;DP=58;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,23,35;MQ=60;FQ=-210 GT:PL:GQ 1/1:255,175,0:99 chr1 40545964 . T G 175 . DP=54;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,43,9;MQ=60;FQ=-184 GT:PL:GQ 1/1:208,157,0:99 chr1 40546209 . C T 185 . DP=34;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,16,2,15;MQ=60;FQ=173;PV4=1,0.06,1,0.083 GT:PL:GQ 0/1:215,0,200:99 chr1 40555321 . C T 62 . DP=3;VDB=0.0030;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:94,9,0:16 chr1 40556922 . T C 222 . DP=58;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,49,3;MQ=59;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 40557656 . G A 142 . DP=25;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,21,4;MQ=60;FQ=-102 GT:PL:GQ 1/1:175,75,0:99 chr1 40558256 . C G 131 . DP=8;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:164,24,0:45 chr1 40733658 . A G 139 . DP=22;VDB=0.0025;AF1=0.5;AC1=1;DP4=1,10,0,11;MQ=59;FQ=142;PV4=1,1,1,0.12 GT:PL:GQ 0/1:169,0,193:99 chr1 40737516 . T G 44 . DP=12;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:77,27,0:51 chr1 40771973 . C G 211 . DP=49;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,18,4,17;MQ=60;FQ=214;PV4=0.5,0.4,1,1 GT:PL:GQ 0/1:241,0,255:99 chr1 40773149 . T C 159 . DP=41;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,3,16,6;MQ=59;FQ=162;PV4=0.7,1e-07,1,0.29 GT:PL:GQ 0/1:189,0,228:99 chr1 40776752 . C A 41 . DP=6;VDB=0.0011;AF1=0.5;AC1=1;DP4=1,1,2,2;MQ=60;FQ=26;PV4=1,0.018,1,1 GT:PL:GQ 0/1:71,0,53:56 chr1 40777800 . T G 50 . DP=17;VDB=0.0241;AF1=0.5;AC1=1;DP4=3,6,4,3;MQ=60;FQ=53;PV4=0.61,2.4e-07,1,0.0014 GT:PL:GQ 0/1:80,0,196:83 chr1 40777842 . A G 56 . DP=19;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,6,5,4;MQ=60;FQ=59;PV4=0.64,2.5e-09,1,1 GT:PL:GQ 0/1:86,0,194:89 chr1 40778377 . C T 120 . DP=26;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,11,2,6;MQ=59;FQ=123;PV4=1,1,0.074,1 GT:PL:GQ 0/1:150,0,255:99 chr1 40781175 . CG C 167 . INDEL;DP=33;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,13,6,5;MQ=59;FQ=170;PV4=0.27,0.024,0.097,0.18 GT:PL:GQ 0/1:205,0,255:99 chr1 40840249 . Ttgcgtgcgtgcgtgcgtgcgtg TTGCGtgcgtgcgtgcgtgcgtgcgtg 197 . INDEL;DP=15;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,8,1;MQ=48;FQ=-61.5 GT:PL:GQ 1/1:238,27,0:51 chr1 40879808 . G T 188 . DP=63;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,49,14;MQ=59;FQ=-217 GT:PL:GQ 1/1:221,190,0:99 chr1 40881041 . C G 161 . DP=57;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,21,32;MQ=59;FQ=-187 GT:PL:GQ 1/1:194,160,0:99 chr1 40955156 . A T 168 . DP=16;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,15,0;MQ=58;FQ=-72 GT:PL:GQ 1/1:201,45,0:87 chr1 41101572 . A G 38 . DP=8;VDB=0.0318;AF1=0.5;AC1=1;DP4=2,2,1,2;MQ=57;FQ=40.9;PV4=1,1,0.14,1 GT:PL:GQ 0/1:68,0,86:71 chr1 41107239 . G A 23 . DP=8;VDB=0.0001;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=60;FQ=25.9;PV4=1,5e-05,1,1 GT:PL:GQ 0/1:53,0,70:56 chr1 41107360 . T C 225 . DP=102;VDB=0.0399;AF1=0.5;AC1=1;DP4=27,21,28,23;MQ=60;FQ=225;PV4=1,1,1,0.28 GT:PL:GQ 0/1:255,0,255:99 chr1 41224008 . C T 21 . DP=12;VDB=0.0301;AF1=0.5;AC1=1;DP4=2,4,1,3;MQ=58;FQ=24;PV4=1,5.9e-05,1,1 GT:PL:GQ 0/1:51,0,154:54 chr1 41284366 . G C 62 . DP=11;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,4,3,3;MQ=60;FQ=62.9;PV4=0.55,0.086,1,1 GT:PL:GQ 0/1:92,0,94:93 chr1 41285087 . T C 194 . DP=89;VDB=0.0216;AF1=0.5;AC1=1;DP4=26,8,32,22;MQ=60;FQ=197;PV4=0.11,5.5e-21,0.22,1 GT:PL:GQ 0/1:224,0,255:99 chr1 41285171 . C A 141 . DP=80;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,33,7,30;MQ=60;FQ=144;PV4=1,2.3e-20,1,1 GT:PL:GQ 0/1:171,0,255:99 chr1 41285585 . G A 44 . DP=91;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,34,8,13;MQ=59;FQ=47;PV4=0.78,1e-19,0.26,0.28 GT:PL:GQ 0/1:74,0,255:77 chr1 41285591 . A G 29 . DP=86;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,33,8,11;MQ=60;FQ=32;PV4=0.38,1.6e-22,0.06,0.41 GT:PL:GQ 0/1:59,0,255:62 chr1 41289993 . T C 62 . DP=25;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,9,6,4;MQ=60;FQ=65;PV4=0.43,8.3e-09,1,0.07 GT:PL:GQ 0/1:92,0,255:95 chr1 41298652 . T C 136 . DP=75;VDB=0.0190;AF1=0.5;AC1=1;DP4=22,7,35,10;MQ=60;FQ=139;PV4=1,1.4e-16,1,1 GT:PL:GQ 0/1:166,0,255:99 chr1 41453286 . GTT GT 214 . INDEL;DP=46;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,4,41;MQ=60;FQ=-170 GT:PL:GQ 1/1:255,135,0:99 chr1 41456821 . T G 46 . DP=33;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,3,10,1;MQ=60;FQ=49;PV4=0.62,8.5e-14,1,0.16 GT:PL:GQ 0/1:76,0,236:79 chr1 41461513 . G C 8.64 . DP=5;VDB=0.0125;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=11.3;PV4=1,0.039,1,0.19 GT:PL:GQ 0/1:38,0,63:40 chr1 41466803 . G A 172 . DP=18;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,5,5,5;MQ=60;FQ=127;PV4=0.62,0.18,1,1 GT:PL:GQ 0/1:202,0,154:99 chr1 41474400 . C G 100 . DP=39;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,8,9,6;MQ=59;FQ=103;PV4=1,9e-17,1,1 GT:PL:GQ 0/1:130,0,255:99 chr1 41475085 . A G 132 . DP=48;VDB=0.0398;AF1=0.5;AC1=1;DP4=19,2,20,5;MQ=60;FQ=135;PV4=0.43,1.4e-13,1,0.0069 GT:PL:GQ 0/1:162,0,230:99 chr1 41486408 . G A 84 . DP=7;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,2,0,5;MQ=60;FQ=13.2;PV4=1,1,1,1 GT:PL:GQ 0/1:114,0,40:43 chr1 41493811 . C T 114 . DP=55;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,8,19,7;MQ=60;FQ=117;PV4=0.76,6.8e-21,1,1 GT:PL:GQ 0/1:144,0,255:99 chr1 41494222 . G T 100 . DP=59;VDB=0.0298;AF1=0.5;AC1=1;DP4=22,14,19,4;MQ=60;FQ=103;PV4=0.093,2.4e-14,1,1 GT:PL:GQ 0/1:130,0,255:99 chr1 41540853 . A T 181 . DP=32;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,24,8;MQ=60;FQ=-123 GT:PL:GQ 1/1:214,96,0:99 chr1 41540861 . T C 135 . DP=35;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,25,9;MQ=60;FQ=-129 GT:PL:GQ 1/1:168,102,0:99 chr1 41618442 . A T 136 . DP=33;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,2,30;MQ=59;FQ=-123 GT:PL:GQ 1/1:169,96,0:99 chr1 41949595 . G A 55.1 . DP=6;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:88,18,0:33 chr1 41949628 . A C 115 . DP=13;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,11,1;MQ=58;FQ=-63 GT:PL:GQ 1/1:148,36,0:69 chr1 41950312 . T C 222 . DP=31;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,7,22;MQ=60;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 41976017 . C T 59 . DP=3;VDB=0.0141;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:91,9,0:16 chr1 41976328 . T C 77.3 . DP=5;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,3,2;MQ=60;FQ=-42 GT:PL:GQ 1/1:110,15,0:27 chr1 41978566 . T G 165 . DP=16;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,9;MQ=60;FQ=-75 GT:PL:GQ 1/1:198,48,0:93 chr1 41978825 . C G 184 . DP=48;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,35,7;MQ=60;FQ=-153 GT:PL:GQ 1/1:217,126,0:99 chr1 41979156 . A G 178 . DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,5,9;MQ=58;FQ=-69 GT:PL:GQ 1/1:211,42,0:81 chr1 41983912 . C A 90 . DP=16;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,16,0;MQ=59;FQ=-75 GT:PL:GQ 1/1:123,48,0:93 chr1 42046613 . G T 160 . DP=44;VDB=0.0393;AF1=0.5;AC1=1;DP4=11,10,9,13;MQ=59;FQ=163;PV4=0.55,2.5e-14,1,0.034 GT:PL:GQ 0/1:190,0,255:99 chr1 42046812 . C T 222 . DP=58;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,21,34;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 42048745 . T C 222 . DP=57;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,20,37;MQ=59;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr1 42049032 . G A 222 . DP=59;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,22,33;MQ=59;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 42049140 . C G 222 . DP=102;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,64,32;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 42050366 . C T 225 . DP=28;VDB=0.0190;AF1=0.5;AC1=1;DP4=8,3,9,8;MQ=60;FQ=149;PV4=0.43,1,1,0.35 GT:PL:GQ 0/1:255,0,176:99 chr1 42629040 . A G 95 . DP=11;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:128,33,0:63 chr1 42630364 . G A 153 . DP=17;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,5;MQ=60;FQ=-78 GT:PL:GQ 1/1:186,51,0:99 chr1 42657196 . T G 110 . DP=66;VDB=0.0190;AF1=0.5;AC1=1;DP4=26,13,18,9;MQ=60;FQ=113;PV4=1,1.7e-17,0.12,1 GT:PL:GQ 0/1:140,0,255:99 chr1 42693597 . A G 222 . DP=74;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,49;MQ=60;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr1 42880516 . T C 222 . DP=62;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,41,18;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 42898843 . A G 122 . DP=64;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,5,29,10;MQ=60;FQ=125;PV4=0.77,1.9e-20,0.22,1 GT:PL:GQ 0/1:152,0,255:99 chr1 42901082 . A C 62 . DP=47;VDB=0.0393;AF1=0.5;AC1=1;DP4=4,28,3,12;MQ=60;FQ=65;PV4=0.66,1e-13,1,1 GT:PL:GQ 0/1:92,0,255:95 chr1 42915753 . T C 123 . DP=95;VDB=0.0365;AF1=0.5;AC1=1;DP4=24,26,17,24;MQ=59;FQ=126;PV4=0.67,5.6e-43,1,1 GT:PL:GQ 0/1:153,0,255:99 chr1 42948585 . C A 17.1 . DP=17;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,6,0,11;MQ=60;FQ=20.1;PV4=1,1.7e-12,1,1 GT:PL:GQ 0/1:47,0,112:50 chr1 42956001 . G A 3.01 . DP=5;VDB=0.0120;AF1=0.4997;AC1=1;DP4=0,3,0,2;MQ=60;FQ=4.77;PV4=1,0.015,1,1 GT:PL:GQ 0/1:30,0,80:28 chr1 42962800 . A T 101 . DP=82;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,24,18,23;MQ=59;FQ=104;PV4=0.82,4.2e-39,0.29,1 GT:PL:GQ 0/1:131,0,255:99 chr1 42986956 . T C 50 . DP=14;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,2,4,3;MQ=58;FQ=53;PV4=1,1.6e-05,1,0.46 GT:PL:GQ 0/1:80,0,145:83 chr1 43002347 . A G 98 . DP=54;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,23,3,24;MQ=60;FQ=101;PV4=0.61,9.6e-21,0.18,1 GT:PL:GQ 0/1:128,0,214:99 chr1 43002358 . A G 136 . DP=42;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,19,0,20;MQ=60;FQ=106;PV4=1,1,1,1 GT:PL:GQ 0/1:166,0,133:99 chr1 43002744 . G A 109 . DP=15;VDB=0.0099;AF1=0.5;AC1=1;DP4=8,1,5,1;MQ=60;FQ=112;PV4=1,1,1,0.18 GT:PL:GQ 0/1:139,0,182:99 chr1 43021810 . C T 20 . DP=13;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,1,3,2;MQ=58;FQ=23;PV4=0.51,1.6e-06,1,1 GT:PL:GQ 0/1:50,0,163:53 chr1 43047024 . A G 5.46 . DP=9;VDB=0.0063;AF1=0.4999;AC1=1;DP4=5,2,1,1;MQ=60;FQ=7.8;PV4=1,0.27,1,0.41 GT:PL:GQ 0/1:34,0,161:34 chr1 43212431 . A G 175 . DP=56;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,32,19;MQ=60;FQ=-181 GT:PL:GQ 1/1:208,154,0:99 chr1 43213103 . A C 225 . DP=53;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,20,9,11;MQ=60;FQ=225;PV4=0.78,0.26,0.1,0.31 GT:PL:GQ 0/1:255,0,255:99 chr1 43215930 . C T 180 . DP=85;VDB=0.0322;AF1=0.5;AC1=1;DP4=24,18,27,15;MQ=59;FQ=183;PV4=0.66,6.3e-21,1,1 GT:PL:GQ 0/1:210,0,255:99 chr1 43221187 . C T 70 . DP=54;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,11,14,5;MQ=60;FQ=73;PV4=0.76,7.7e-17,1,1 GT:PL:GQ 0/1:100,0,255:99 chr1 43228189 . T A 205 . DP=35;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,13,20;MQ=60;FQ=-126 GT:PL:GQ 1/1:238,99,0:99 chr1 43240998 . C T 195 . DP=23;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,5,2,11;MQ=60;FQ=180;PV4=0.18,0.3,1,0.19 GT:PL:GQ 0/1:225,0,207:99 chr1 43296354 . G T 93 . DP=9;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:126,27,0:51 chr1 43300663 . T C 63 . DP=8;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:96,24,0:45 chr1 43300921 . C G 222 . DP=23;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,20;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 43305753 . G A 225 . DP=113;VDB=0.0365;AF1=0.5;AC1=1;DP4=45,19,36,13;MQ=59;FQ=225;PV4=0.83,0.0086,1,0.32 GT:PL:GQ 0/1:255,0,255:99 chr1 43395635 . C T 174 . DP=44;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,11,10,16;MQ=60;FQ=177;PV4=1,1.2e-10,1,1 GT:PL:GQ 0/1:204,0,255:99 chr1 43396414 . G A 225 . DP=129;VDB=0.0380;AF1=0.5;AC1=1;DP4=46,18,41,19;MQ=59;FQ=225;PV4=0.7,0.02,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 43408966 . G A 190 . DP=98;VDB=0.0400;AF1=0.5;AC1=1;DP4=20,21,21,35;MQ=60;FQ=193;PV4=0.3,1.8e-26,1,0.49 GT:PL:GQ 0/1:220,0,255:99 chr1 43418026 . C T 47 . DP=32;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,9,5,6;MQ=60;FQ=50;PV4=0.72,1.6e-09,1,0.38 GT:PL:GQ 0/1:77,0,255:80 chr1 43424519 . T G 43 . DP=9;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,2,0,6;MQ=60;FQ=40.6;PV4=0.33,0.00042,1,1 GT:PL:GQ 0/1:73,0,69:71 chr1 43610910 . T G 138 . DP=29;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,2,11,6;MQ=60;FQ=141;PV4=0.41,1.5e-09,1,0.33 GT:PL:GQ 0/1:168,0,200:99 chr1 43611005 . G A 207 . DP=26;VDB=0.0384;AF1=0.5;AC1=1;DP4=1,9,4,9;MQ=60;FQ=141;PV4=0.34,0.42,1,0.1 GT:PL:GQ 0/1:237,0,168:99 chr1 43613786 . G T 83 . DP=24;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,12,2,6;MQ=60;FQ=86;PV4=0.6,0.17,1,0.07 GT:PL:GQ 0/1:113,0,205:99 chr1 43618596 . G A 93 . DP=57;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,21,11,6;MQ=60;FQ=96;PV4=0.25,2e-17,1,0.098 GT:PL:GQ 0/1:123,0,255:99 chr1 43632536 . C T 225 . DP=89;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,28,14,22;MQ=60;FQ=225;PV4=0.66,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 43632815 . T G 95 . DP=136;VDB=0.0345;AF1=0.5;AC1=1;DP4=47,32,29,23;MQ=59;FQ=98;PV4=0.72,1.8e-50,1,1 GT:PL:GQ 0/1:125,0,255:99 chr1 43632816 . T C 90 . DP=136;VDB=0.0365;AF1=0.5;AC1=1;DP4=48,31,29,23;MQ=59;FQ=93;PV4=0.59,4.8e-45,1,1 GT:PL:GQ 0/1:120,0,255:99 chr1 43632997 . A G 157 . DP=33;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,15,1,13;MQ=59;FQ=160;PV4=1,1,1,1 GT:PL:GQ 0/1:187,0,202:99 chr1 43636484 . C G 127 . DP=46;VDB=0.0373;AF1=0.5;AC1=1;DP4=8,17,5,13;MQ=60;FQ=130;PV4=1,7.6e-06,1,1 GT:PL:GQ 0/1:157,0,255:99 chr1 43637549 . A G 86 . DP=22;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,1,7,0;MQ=59;FQ=89;PV4=1,1,1,1 GT:PL:GQ 0/1:116,0,184:99 chr1 43637932 . T C 113 . DP=105;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,42,11,37;MQ=60;FQ=116;PV4=1,5.7e-32,0.46,0.13 GT:PL:GQ 0/1:143,0,255:99 chr1 43638410 . G C 66 . DP=21;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,2,6,0;MQ=59;FQ=69;PV4=1,0.48,0.058,0.19 GT:PL:GQ 0/1:96,0,230:99 chr1 43638457 . T A 66 . DP=49;VDB=0.0271;AF1=0.5;AC1=1;DP4=16,10,17,3;MQ=59;FQ=69;PV4=0.11,1.3e-12,0.13,1 GT:PL:GQ 0/1:96,0,255:99 chr1 43642988 . G T 26 . DP=20;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,9,1,7;MQ=60;FQ=29;PV4=1,1.8e-08,1,0.43 GT:PL:GQ 0/1:56,0,214:59 chr1 43649508 . A G 86 . DP=29;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,10,4,7;MQ=60;FQ=89;PV4=0.72,1.4e-06,1,1 GT:PL:GQ 0/1:116,0,255:99 chr1 43650741 . T C 26 . DP=11;VDB=0.0033;AF1=0.5;AC1=1;DP4=6,0,5,0;MQ=60;FQ=29;PV4=1,8.6e-06,1,1 GT:PL:GQ 0/1:56,0,124:59 chr1 43652369 . T C 195 . DP=82;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,53,25;MQ=58;FQ=-262 GT:PL:GQ 1/1:228,235,0:99 chr1 43663376 . A G 131 . DP=52;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,15,22;MQ=59;FQ=-138 GT:PL:GQ 1/1:164,111,0:99 chr1 43664119 . A G 49 . DP=31;VDB=0.0140;AF1=0.5;AC1=1;DP4=11,1,15,2;MQ=60;FQ=52;PV4=1,3.3e-13,1,1 GT:PL:GQ 0/1:79,0,181:82 chr1 43664218 . C T 134 . DP=88;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,23,21,21;MQ=60;FQ=137;PV4=0.83,2.4e-39,1,1 GT:PL:GQ 0/1:164,0,255:99 chr1 43675467 . G A 222 . DP=56;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,40,14;MQ=59;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr1 43680855 . G A 90.3 . DP=6;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:123,15,0:27 chr1 43681184 . C T 81 . DP=12;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-63 GT:PL:GQ 1/1:114,36,0:69 chr1 43688743 . G A 57 . DP=14;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,5,0,9;MQ=60;FQ=60;PV4=1,6.4e-08,1,1 GT:PL:GQ 0/1:87,0,107:90 chr1 43697968 . G A 125 . DP=6;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:158,15,0:27 chr1 43699935 . C T 222 . DP=39;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,30,9;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 43700140 . A G 222 . DP=68;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,29,35;MQ=59;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr1 43771016 . TAAA TAA 214 . INDEL;DP=33;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,6,25;MQ=59;FQ=-128 GT:PL:GQ 1/1:255,93,0:99 chr1 43771090 . G A 64.1 . DP=8;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:97,21,0:39 chr1 43773033 . A G 105 . DP=8;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,4,3;MQ=60;FQ=-48 GT:PL:GQ 1/1:138,21,0:39 chr1 43774495 . G C 56 . DP=8;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:89,24,0:45 chr1 43777852 . C T 159 . DP=28;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,7,20;MQ=60;FQ=-108 GT:PL:GQ 1/1:192,81,0:99 chr1 43779564 . T C 222 . DP=47;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,33,12;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 43779869 . T G 105 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,2,2;MQ=60;FQ=-39 GT:PL:GQ 1/1:137,12,0:21 chr1 43782846 . G A 197 . DP=16;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,15,1;MQ=60;FQ=-75 GT:PL:GQ 1/1:230,48,0:93 chr1 43826312 . C A 222 . DP=179;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,103,63;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 43851797 . G A 225 . DP=93;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,32,17,28;MQ=59;FQ=225;PV4=0.66,0.096,1,0.4 GT:PL:GQ 0/1:255,0,255:99 chr1 43855578 . G C,A 208 . DP=43;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,9,32;MQ=59;FQ=-147 GT:PL:GQ 1/1:241,120,0,233,96,230:99 chr1 43855626 . G C 10.4 . DP=18;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,6,0,6;MQ=60;FQ=13.2;PV4=0.23,7e-09,1,0.11 GT:PL:GQ 0/1:40,0,201:42 chr1 43907092 . G A 222 . DP=47;VDB=0.0400;AF1=1;AC1=2;DP4=0,1,24,21;MQ=59;FQ=-136;PV4=0.48,1,1,0.18 GT:PL:GQ 1/1:255,109,0:99 chr1 43916642 . T C 222 . DP=87;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,29,55;MQ=60;FQ=-280 GT:PL:GQ 1/1:255,253,0:99 chr1 43998397 . GTTTTTTT GTTTTTT 86.5 . INDEL;DP=25;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,16;MQ=60;FQ=-97.5 GT:PL:GQ 1/1:127,63,0:99 chr1 44035352 . C T 222 . DP=50;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,32,16;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 44044468 . C T 53 . DP=9;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:86,27,0:51 chr1 44057257 . A G 100 . DP=6;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,2,4;MQ=60;FQ=-45 GT:PL:GQ 1/1:133,18,0:33 chr1 44057668 . G T 149 . DP=55;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,9,44;MQ=59;FQ=-187 GT:PL:GQ 1/1:182,160,0:99 chr1 44057696 . A G 190 . DP=43;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,0,42;MQ=59;FQ=-153 GT:PL:GQ 1/1:223,126,0:99 chr1 44058034 . G A 84 . DP=29;VDB=0.0042;AF1=1;AC1=2;DP4=0,1,24,1;MQ=59;FQ=-78;PV4=0.077,0.04,1,1 GT:PL:GQ 1/1:117,51,0:99 chr1 44058265 . C A 125 . DP=39;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,2,34;MQ=59;FQ=-135 GT:PL:GQ 1/1:158,108,0:99 chr1 44064319 . A G 222 . DP=42;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,26,13;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 44067859 . A G 222 . DP=81;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,35,44;MQ=60;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr1 44071221 . G A 222 . DP=57;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,18,33;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 44072018 . C T 147 . DP=71;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,40,26;MQ=60;FQ=-200;PV4=1,0.00085,1,0.27 GT:PL:GQ 1/1:180,173,0:99 chr1 44072066 . C T 165 . DP=73;VDB=0.0399;AF1=1;AC1=2;DP4=1,1,33,35;MQ=59;FQ=-180;PV4=1,0.00082,1,1 GT:PL:GQ 1/1:198,153,0:99 chr1 44072420 . A G 214 . DP=25;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,15,8;MQ=60;FQ=-96 GT:PL:GQ 1/1:247,69,0:99 chr1 44075227 . T C 79 . DP=13;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:112,33,0:63 chr1 44078359 . T A 222 . DP=35;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,30,4;MQ=59;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 44078384 . T C 179 . DP=55;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,46,7;MQ=59;FQ=-187 GT:PL:GQ 1/1:212,160,0:99 chr1 44079411 . T C 222 . DP=48;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,7,36;MQ=59;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 44083110 . C T 155 . DP=38;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,29,6;MQ=60;FQ=-132 GT:PL:GQ 1/1:188,105,0:99 chr1 44083507 . T C 222 . DP=59;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,42;MQ=59;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 44083519 . G A 177 . DP=55;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,11,43;MQ=59;FQ=-190 GT:PL:GQ 1/1:210,163,0:99 chr1 44084739 . C T 222 . DP=43;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,19,19;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 44086080 . T C 168 . DP=66;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,43,18;MQ=59;FQ=-211 GT:PL:GQ 1/1:201,184,0:99 chr1 44086831 . C T 222 . DP=59;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,33,25;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 44087496 . C T 203 . DP=62;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,54,8;MQ=59;FQ=-214 GT:PL:GQ 1/1:236,187,0:99 chr1 44119038 . ATTTTTTT ATTTTTTTT 12.8 . INDEL;DP=9;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-55.5 GT:PL:GQ 1/1:53,21,0:30 chr1 44125962 . CAAAAA CAAAA 83.5 . INDEL;DP=32;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,29,3;MQ=60;FQ=-131 GT:PL:GQ 1/1:124,96,0:99 chr1 44137257 . C A 222 . DP=56;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,29,26;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 44280381 . A T 95 . DP=21;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,21,0;MQ=60;FQ=-90 GT:PL:GQ 1/1:128,63,0:99 chr1 44280425 . T G 190 . DP=50;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,38,11;MQ=60;FQ=-175 GT:PL:GQ 1/1:223,148,0:99 chr1 44323736 . T C 106 . DP=33;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,27,3;MQ=60;FQ=-117 GT:PL:GQ 1/1:139,90,0:99 chr1 44386445 . G A 207 . DP=49;VDB=0.0298;AF1=0.5;AC1=1;DP4=21,8,16,4;MQ=60;FQ=210;PV4=0.74,0.11,1,0.28 GT:PL:GQ 0/1:237,0,255:99 chr1 44386615 . A G 222 . DP=34;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,29;MQ=59;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr1 44395786 . C T 201 . DP=43;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,22;MQ=59;FQ=-153 GT:PL:GQ 1/1:234,126,0:99 chr1 44401384 . A G 217 . DP=46;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,11,35;MQ=60;FQ=-165 GT:PL:GQ 1/1:250,138,0:99 chr1 44415415 . C T 222 . DP=126;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,55,68;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 44426025 . G A 222 . DP=21;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,11,10;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 44426948 . G A 214 . DP=98;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,76;MQ=60;FQ=-282 GT:PL:GQ 1/1:247,255,0:99 chr1 44432500 . C G 171 . DP=66;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,10,50;MQ=60;FQ=-208 GT:PL:GQ 1/1:204,181,0:99 chr1 44442521 . A C 94 . DP=26;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,4,20;MQ=59;FQ=-99 GT:PL:GQ 1/1:127,72,0:99 chr1 44457215 . G A 52.1 . DP=6;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:85,18,0:33 chr1 44457305 . G A 193 . DP=26;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,18,6;MQ=60;FQ=-99 GT:PL:GQ 1/1:226,72,0:99 chr1 44594966 . G A 57 . DP=40;VDB=0.0099;AF1=0.5;AC1=1;DP4=18,4,15,3;MQ=60;FQ=60;PV4=1,5.4e-22,1,1 GT:PL:GQ 0/1:87,0,255:90 chr1 44595047 . T A 181 . DP=124;VDB=0.0392;AF1=0.5;AC1=1;DP4=34,29,39,19;MQ=60;FQ=184;PV4=0.14,3.2e-32,0.15,1 GT:PL:GQ 0/1:211,0,255:99 chr1 44595113 . G C 222 . DP=123;VDB=0.0399;AF1=1;AC1=2;DP4=1,1,46,72;MQ=60;FQ=-282;PV4=1,1.9e-05,0.45,1 GT:PL:GQ 1/1:255,255,0:99 chr1 44595410 . A G 153 . DP=74;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,26,12,18;MQ=60;FQ=156;PV4=1,1.3e-11,1,1 GT:PL:GQ 0/1:183,0,255:99 chr1 44595426 . G A 141 . DP=71;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,26,12,18;MQ=60;FQ=144;PV4=0.81,2e-19,1,1 GT:PL:GQ 0/1:171,0,255:99 chr1 44679556 . A G 191 . DP=111;VDB=0.0400;AF1=0.5;AC1=1;DP4=29,20,25,35;MQ=60;FQ=194;PV4=0.084,1.5e-25,0.18,0.36 GT:PL:GQ 0/1:221,0,255:99 chr1 44681113 . T C 30.5 . DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:63,12,0:21 chr1 44684995 . T C 206 . DP=21;VDB=0.0373;AF1=0.5;AC1=1;DP4=5,1,4,10;MQ=60;FQ=82;PV4=0.05,0.31,1,0.028 GT:PL:GQ 0/1:236,0,109:99 chr1 44788398 . A T 187 . DP=21;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,14,7;MQ=59;FQ=-90 GT:PL:GQ 1/1:220,63,0:99 chr1 45227851 . G C 99 . DP=56;VDB=0.0322;AF1=0.5;AC1=1;DP4=25,4,19,6;MQ=59;FQ=102;PV4=0.49,3.7e-18,0.46,1 GT:PL:GQ 0/1:129,0,255:99 chr1 45472798 . Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt Ttgtgtgtgtgtgtgtgtgtgtgtgt,Ttgtgtgtgtgtgtgtgtgtgtgt 11.5 . INDEL;DP=5;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,2,2;MQ=29;FQ=-40.5 GT:PL:GQ 1/1:96,52,46,52,0,46:9 chr1 45474157 . G A 121 . DP=19;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,6,13;MQ=60;FQ=-84 GT:PL:GQ 1/1:154,57,0:99 chr1 45475566 . A G 9.31 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr1 45479874 . G T 97 . DP=11;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:130,27,0:51 chr1 45504720 . G C 222 . DP=36;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,20,13;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 45524213 . C T 91 . DP=12;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:124,33,0:63 chr1 45796269 . G C 218 . DP=54;VDB=0.0345;AF1=1;AC1=2;DP4=1,0,24,26;MQ=59;FQ=-151;PV4=0.49,0.049,1,0.29 GT:PL:GQ 1/1:251,124,0:99 chr1 45798555 . T C 222 . DP=132;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,72,56;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 45805566 . G C 206 . DP=47;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,26;MQ=59;FQ=-147 GT:PL:GQ 1/1:239,120,0:99 chr1 45965307 . G A 53 . DP=60;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,31,2,22;MQ=59;FQ=56;PV4=1,3.9e-16,1,1 GT:PL:GQ 0/1:83,0,229:86 chr1 45965340 . T C 35 . DP=27;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,16,1,8;MQ=58;FQ=38;PV4=0.36,9.5e-10,1,0.037 GT:PL:GQ 0/1:65,0,173:68 chr1 45973928 . G A 225 . DP=54;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,13,14,12;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 45981512 . T C 80 . DP=105;VDB=0.0345;AF1=0.5;AC1=1;DP4=26,40,10,26;MQ=59;FQ=83;PV4=0.28,3.9e-35,0.0054,1 GT:PL:GQ 0/1:110,0,255:99 chr1 46027355 . T C 225 . DP=34;VDB=0.0140;AF1=0.5;AC1=1;DP4=11,1,18,3;MQ=60;FQ=137;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,164:99 chr1 46032311 . A G 131 . DP=42;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,11,8,10;MQ=60;FQ=134;PV4=0.76,2.1e-15,1,1 GT:PL:GQ 0/1:161,0,255:99 chr1 46050004 . TTCGG T 214 . INDEL;DP=15;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,13;MQ=48;FQ=-73.5 GT:PL:GQ 1/1:255,39,0:75 chr1 46065998 . T C 222 . DP=111;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,72,36;MQ=56;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 46073489 . G A 95 . DP=13;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,1,6,3;MQ=58;FQ=57;PV4=1,0.0024,1,0.3 GT:PL:GQ 0/1:125,0,84:87 chr1 46078630 . A G 28 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:60,9,0:16 chr1 46078854 . A G 192 . DP=23;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,9;MQ=60;FQ=-96 GT:PL:GQ 1/1:225,69,0:99 chr1 46078884 . C T 222 . DP=32;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,17,15;MQ=60;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr1 46080947 . A C 222 . DP=121;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,61,57;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 46081940 . T A 199 . DP=36;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,27,6;MQ=60;FQ=-126 GT:PL:GQ 1/1:232,99,0:99 chr1 46081960 . C T 222 . DP=50;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,35,13;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 46082431 . C A 222 . DP=82;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,19,53;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr1 46083706 . C G 225 . DP=33;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,10,6,11;MQ=59;FQ=225;PV4=1,0.051,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr1 46085879 . C G 65 . DP=9;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:98,24,0:45 chr1 46086077 . C T 222 . DP=41;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,14,26;MQ=60;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 46086329 . C T 84 . DP=20;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,2,10,2;MQ=60;FQ=87;PV4=1,4.5e-05,1,0.03 GT:PL:GQ 0/1:114,0,157:99 chr1 46087577 . G A 222 . DP=90;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,32,54;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 46087879 . A G 194 . DP=81;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,58,20;MQ=59;FQ=-262 GT:PL:GQ 1/1:227,235,0:99 chr1 46089225 . C G 222 . DP=73;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,49,22;MQ=60;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr1 46124663 . A G 225 . DP=58;VDB=0.0392;AF1=0.5;AC1=1;DP4=29,0,23,6;MQ=60;FQ=157;PV4=0.023,0.24,0.16,1 GT:PL:GQ 0/1:255,0,184:99 chr1 46347910 . G A 134 . DP=27;VDB=0.0033;AF1=0.5;AC1=1;DP4=12,1,13,0;MQ=60;FQ=137;PV4=1,0.48,1,0.45 GT:PL:GQ 0/1:164,0,188:99 chr1 46379518 . A G 129 . DP=61;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,18,6,21;MQ=60;FQ=132;PV4=0.1,2.3e-19,1,1 GT:PL:GQ 0/1:159,0,255:99 chr1 46424964 . G A 61 . DP=19;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,17,0;MQ=59;FQ=-78 GT:PL:GQ 1/1:94,51,0:99 chr1 46466721 . T C 225 . DP=149;VDB=0.0399;AF1=0.5;AC1=1;DP4=32,33,42,33;MQ=60;FQ=225;PV4=0.5,0.42,0.094,1 GT:PL:GQ 0/1:255,0,255:99 chr1 46476587 . T G 204 . DP=24;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,8,7,5;MQ=58;FQ=202;PV4=0.41,0.46,1,0.064 GT:PL:GQ 0/1:234,0,230:99 chr1 46485562 . C T 35.8 . DP=2;VDB=0.0178;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:67,6,0:10 chr1 46487552 . G A 220 . DP=62;VDB=0.0399;AF1=0.5;AC1=1;DP4=27,6,24,3;MQ=60;FQ=222;PV4=0.49,0.12,0.14,1 GT:PL:GQ 0/1:250,0,255:99 chr1 46487560 . A G 201 . DP=62;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,45,13;MQ=60;FQ=-202 GT:PL:GQ 1/1:234,175,0:99 chr1 46491635 . C T 7.77 . DP=11;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:39,9,0:11 chr1 46493460 . T G 32 . DP=60;VDB=0.0399;AF1=0.5;AC1=1;DP4=28,12,9,8;MQ=60;FQ=35;PV4=0.24,1.9e-19,1,1 GT:PL:GQ 0/1:62,0,255:65 chr1 46495024 . G A 38 . DP=21;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,3,10,1;MQ=60;FQ=41;PV4=0.31,7.2e-12,1,1 GT:PL:GQ 0/1:68,0,213:71 chr1 46495434 . G A 35 . DP=3;VDB=0.0192;AF1=0.5004;AC1=1;DP4=1,0,2,0;MQ=60;FQ=3.55;PV4=1,1,1,1 GT:PL:GQ 0/1:65,0,28:31 chr1 46496709 . A G 222 . DP=26;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,12;MQ=59;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 46498375 . A G 222 . DP=36;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,18;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 46500613 . T C 110 . DP=74;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,26,16,15;MQ=60;FQ=113;PV4=0.35,7.2e-23,1,1 GT:PL:GQ 0/1:140,0,255:99 chr1 46511487 . G C 40.5 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:73,12,0:21 chr1 46521517 . G A 222 . DP=36;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,19;MQ=60;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 46521559 . A T 215 . DP=38;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,18,19;MQ=60;FQ=-138 GT:PL:GQ 1/1:248,111,0:99 chr1 46546208 . T C 66 . DP=13;VDB=0.0008;AF1=0.5;AC1=1;DP4=8,0,4,0;MQ=60;FQ=69;PV4=1,1,1,1 GT:PL:GQ 0/1:96,0,149:99 chr1 46598273 . A C 142 . DP=14;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,9,4;MQ=58;FQ=-66 GT:PL:GQ 1/1:175,39,0:75 chr1 46641839 . A G 120 . DP=23;VDB=0.0393;AF1=0.5;AC1=1;DP4=10,2,8,1;MQ=59;FQ=123;PV4=1,0.28,1,0.021 GT:PL:GQ 0/1:150,0,203:99 chr1 46655158 . T C 222 . DP=37;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,15,21;MQ=60;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 46806429 . A T 28 . DP=3;VDB=0.0141;AF1=0.5002;AC1=1;DP4=1,0,2,0;MQ=60;FQ=5.46;PV4=1,0.29,1,0.33 GT:PL:GQ 0/1:58,0,31:34 chr1 46806480 . C T 59 . DP=14;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,0,7,1;MQ=60;FQ=62;PV4=1,0.00038,1,1 GT:PL:GQ 0/1:89,0,111:92 chr1 46806550 . C T 68 . DP=25;VDB=0.0384;AF1=0.5;AC1=1;DP4=11,3,5,5;MQ=60;FQ=71;PV4=0.2,3.8e-11,1,0.26 GT:PL:GQ 0/1:98,0,237:99 chr1 46806703 . A G 106 . DP=24;VDB=0.0014;AF1=0.5;AC1=1;DP4=2,10,4,7;MQ=60;FQ=109;PV4=0.37,0.0023,1,1 GT:PL:GQ 0/1:136,0,189:99 chr1 46810405 . TGGGGG TGGGG 29.5 . INDEL;DP=37;VDB=0.0271;AF1=0.5;AC1=1;DP4=19,1,15,1;MQ=59;FQ=31.5;PV4=1,1.8e-08,0.13,1 GT:PL:GQ 0/1:67,0,73:69 chr1 46810530 . A G 177 . DP=86;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,17,27,24;MQ=60;FQ=180;PV4=0.82,7.4e-19,1,1 GT:PL:GQ 0/1:207,0,255:99 chr1 46810670 . T C 98 . DP=93;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,25,27,13;MQ=59;FQ=101;PV4=0.14,8.3e-36,1,1 GT:PL:GQ 0/1:128,0,255:99 chr1 46810842 . C T 137 . DP=18;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,7,0,11;MQ=60;FQ=90;PV4=1,1,1,1 GT:PL:GQ 0/1:167,0,117:99 chr1 46812519 . A G 63 . DP=20;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,1,8,1;MQ=59;FQ=66;PV4=1,1.8e-06,1,0.28 GT:PL:GQ 0/1:93,0,192:96 chr1 46818508 . T C 20 . DP=15;VDB=0.0140;AF1=0.5;AC1=1;DP4=8,1,5,0;MQ=60;FQ=23;PV4=1,5.7e-05,1,0.35 GT:PL:GQ 0/1:50,0,166:53 chr1 46826587 . C A 24 . DP=9;VDB=0.0019;AF1=0.5;AC1=1;DP4=1,3,0,5;MQ=60;FQ=27;PV4=0.44,2.6e-06,1,0.034 GT:PL:GQ 0/1:54,0,110:57 chr1 46827214 . A C 70 . DP=8;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:103,24,0:45 chr1 46827485 . C T 109 . DP=60;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,17,8,18;MQ=59;FQ=112;PV4=0.19,1.3e-13,0.42,0.43 GT:PL:GQ 0/1:139,0,255:99 chr1 46860237 . G A 28 . DP=6;VDB=0.0301;AF1=0.5;AC1=1;DP4=2,0,2,2;MQ=60;FQ=21.5;PV4=0.47,0.0023,1,1 GT:PL:GQ 0/1:58,0,49:52 chr1 46871986 . T C 222 . DP=45;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,27,13;MQ=60;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 46877180 . G A 156 . DP=67;VDB=0.0271;AF1=0.5;AC1=1;DP4=18,10,25,13;MQ=60;FQ=159;PV4=1,1.1e-23,0.2,1 GT:PL:GQ 0/1:186,0,255:99 chr1 46976837 . C T 118 . DP=57;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,16,11,15;MQ=60;FQ=121;PV4=1,5.7e-19,1,0.44 GT:PL:GQ 0/1:148,0,255:99 chr1 47013180 . A G 187 . DP=70;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,13,15,21;MQ=60;FQ=190;PV4=0.32,2.1e-08,0.18,1 GT:PL:GQ 0/1:217,0,255:99 chr1 47013364 . T C 222 . DP=25;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,8,17;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 47014821 . aaaaagaaaa aAAAAGaaaagaaaa 21.5 . INDEL;DP=23;VDB=0.0140;AF1=0.5;AC1=1;DP4=10,3,4,2;MQ=58;FQ=24.2;PV4=1,1,0.29,1 GT:PL:GQ 0/1:59,0,70:62 chr1 47059934 . T C 222 . DP=75;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,47;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr1 47099346 . C A 79.1 . DP=8;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:112,21,0:39 chr1 47108828 . T C 113 . DP=6;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,6,0;MQ=56;FQ=-45 GT:PL:GQ 1/1:146,18,0:33 chr1 47109089 . A G 54 . DP=16;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,7,2,4;MQ=60;FQ=57;PV4=1,2.8e-07,1,0.036 GT:PL:GQ 0/1:84,0,227:87 chr1 47110712 . C T 53 . DP=4;VDB=0.0208;AF1=0.5004;AC1=1;DP4=1,0,3,0;MQ=60;FQ=3.55;PV4=1,0.31,1,0.22 GT:PL:GQ 0/1:83,0,28:31 chr1 47110766 . GC GCC 214 . INDEL;DP=12;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,10,2;MQ=60;FQ=-70.5 GT:PL:GQ 1/1:255,36,0:69 chr1 47118096 . C A 22 . DP=18;VDB=0.0033;AF1=0.5;AC1=1;DP4=11,0,6,0;MQ=60;FQ=25;PV4=1,4.5e-09,1,1 GT:PL:GQ 0/1:52,0,167:55 chr1 47118168 . C T 225 . DP=80;VDB=0.0298;AF1=0.5;AC1=1;DP4=33,9,33,5;MQ=59;FQ=225;PV4=0.39,1,0.47,0.5 GT:PL:GQ 0/1:255,0,255:99 chr1 47118189 . G T 72 . DP=102;VDB=0.0392;AF1=0.5;AC1=1;DP4=35,18,34,13;MQ=60;FQ=75;PV4=0.52,2.8e-47,0.47,1 GT:PL:GQ 0/1:102,0,255:99 chr1 47124479 . A G 34 . DP=24;VDB=0.0380;AF1=0.5;AC1=1;DP4=0,10,0,13;MQ=59;FQ=37;PV4=1,6.4e-14,0.2,0.3 GT:PL:GQ 0/1:64,0,153:67 chr1 47130873 . A G 113 . DP=23;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,3,9,3;MQ=60;FQ=116;PV4=1,7.4e-07,1,1 GT:PL:GQ 0/1:143,0,192:99 chr1 47138444 . C T 106 . DP=8;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:139,24,0:45 chr1 47138819 . T G 162 . DP=154;VDB=0.0393;AF1=0.5;AC1=1;DP4=37,42,30,42;MQ=60;FQ=165;PV4=0.62,1.7e-40,1,0.063 GT:PL:GQ 0/1:192,0,255:99 chr1 47139103 . C T 170 . DP=98;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,26,17,41;MQ=60;FQ=173;PV4=0.81,1.5e-28,1,1 GT:PL:GQ 0/1:200,0,255:99 chr1 47155462 . G A 122 . DP=16;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,6,0,9;MQ=60;FQ=91;PV4=1,0.3,1,1 GT:PL:GQ 0/1:152,0,118:99 chr1 47276728 . G C 222 . DP=52;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,18,31;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 47348573 . C G 31 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=30;FQ=-36 GT:PL:GQ 1/1:63,9,0:16 chr1 47348578 . T C 42 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=30;FQ=-36 GT:PL:GQ 1/1:74,9,0:16 chr1 47395973 . G A 222 . DP=60;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,18,42;MQ=59;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr1 47398743 . G C 222 . DP=79;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,40,34;MQ=59;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr1 47400059 . A G 171 . DP=62;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,40,16;MQ=30;FQ=-196 GT:PL:GQ 1/1:204,169,0:99 chr1 47401424 . A T 16.1 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,0,3;MQ=21;FQ=-36 GT:PL:GQ 1/1:48,9,0:15 chr1 47402483 . gtgtttgt gtgt 215 . INDEL;DP=45;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,10,12,8;MQ=57;FQ=203;PV4=0.75,0.49,0.11,1 GT:PL:GQ 0/1:253,0,238:99 chr1 47495822 . C T 158 . DP=52;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,13,9,26;MQ=60;FQ=161;PV4=0.73,1.5e-12,1,0.49 GT:PL:GQ 0/1:188,0,203:99 chr1 47496983 . C A 97 . DP=39;VDB=0.0033;AF1=0.5;AC1=1;DP4=18,2,14,4;MQ=60;FQ=100;PV4=0.39,4.1e-18,1,0.19 GT:PL:GQ 0/1:127,0,233:99 chr1 47515563 . GAAAAA GAAAAAA 27.7 . INDEL;DP=5;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:68,15,0:27 chr1 47515596 . A C 114 . DP=10;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,0,7,0;MQ=60;FQ=20.1;PV4=1,0.35,1,1 GT:PL:GQ 0/1:144,0,47:50 chr1 47550246 . GAAA GAAAA 33.5 . INDEL;DP=11;VDB=0.0164;AF1=0.5;AC1=1;DP4=7,0,4,0;MQ=50;FQ=36.5;PV4=1,1,1,0.34 GT:PL:GQ 0/1:71,0,110:74 chr1 47571902 . C T 181 . DP=64;VDB=0.0298;AF1=0.5;AC1=1;DP4=19,13,16,16;MQ=54;FQ=184;PV4=0.62,1.5e-18,1.4e-06,1 GT:PL:GQ 0/1:211,0,255:99 chr1 47571905 . C T 93 . DP=64;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,13,16,16;MQ=54;FQ=96;PV4=0.62,6.2e-28,2e-06,0.43 GT:PL:GQ 0/1:123,0,255:99 chr1 47571943 . CTTTTTTTTTTTTTTTT CTTTTTTTTTTTTT,CTTTTTTTTTTTT 68.5 . INDEL;DP=55;VDB=0.0384;AF1=1;AC1=2;DP4=1,2,3,18;MQ=53;FQ=-57.5;PV4=0.44,1,0.13,1 GT:PL:GQ 1/1:130,44,21,95,0,89:43 chr1 47571996 . T C 159 . DP=30;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,13,1,16;MQ=54;FQ=126;PV4=1,1,0.0015,0.45 GT:PL:GQ 0/1:189,0,153:99 chr1 47582195 . G A 9.52 . DP=4;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=47;FQ=12.2;PV4=1,0.12,0,0.34 GT:PL:GQ 0/1:39,0,58:41 chr1 47582292 . T G 21 . DP=45;VDB=0.0392;AF1=0.5;AC1=1;DP4=24,11,9,1;MQ=56;FQ=24;PV4=0.25,3e-09,9.2e-08,1 GT:PL:GQ 0/1:51,0,255:54 chr1 47583415 . G T 5.46 . DP=16;VDB=0.0033;AF1=0.4999;AC1=1;DP4=8,0,8,0;MQ=60;FQ=7.8;PV4=1,1.2e-13,1,0.36 GT:PL:GQ 0/1:34,0,150:34 chr1 47607281 . C T 225 . DP=126;VDB=0.0216;AF1=0.5;AC1=1;DP4=18,48,11,49;MQ=59;FQ=225;PV4=0.29,0.47,0.018,0.34 GT:PL:GQ 0/1:255,0,255:99 chr1 47607641 . C T 120 . DP=34;VDB=0.0053;AF1=0.5;AC1=1;DP4=21,0,13,0;MQ=59;FQ=123;PV4=1,0.0072,0.1,0.31 GT:PL:GQ 0/1:150,0,188:99 chr1 47607762 . T C 225 . DP=127;VDB=0.0345;AF1=0.5;AC1=1;DP4=25,39,34,22;MQ=60;FQ=225;PV4=0.028,0.026,0.065,1 GT:PL:GQ 0/1:255,0,255:99 chr1 47607785 . G A 186 . DP=134;VDB=0.0400;AF1=0.5;AC1=1;DP4=24,35,32,40;MQ=59;FQ=189;PV4=0.72,5.8e-34,0.066,0.2 GT:PL:GQ 0/1:216,0,255:99 chr1 47607851 . A T 166 . DP=86;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,25,10,39;MQ=58;FQ=169;PV4=0.32,5.6e-21,0.058,1 GT:PL:GQ 0/1:196,0,255:99 chr1 47608983 . G T 27 . DP=36;VDB=0.0393;AF1=0.5;AC1=1;DP4=11,14,5,5;MQ=33;FQ=30;PV4=1,2.6e-13,1,0.31 GT:PL:GQ 0/1:57,0,243:60 chr1 47609407 . C T 225 . DP=62;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,14,23,7;MQ=54;FQ=225;PV4=0.06,1,1,0.31 GT:PL:GQ 0/1:255,0,255:99 chr1 47609489 . T C 176 . DP=101;VDB=0.0399;AF1=0.5;AC1=1;DP4=28,24,26,21;MQ=57;FQ=179;PV4=1,2.1e-33,1,1 GT:PL:GQ 0/1:206,0,255:99 chr1 47609668 . T C 83 . DP=53;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,26,4,19;MQ=60;FQ=86;PV4=0.72,1.5e-12,1,0.33 GT:PL:GQ 0/1:113,0,255:99 chr1 47610436 . G C 40 . DP=44;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,21,4,8;MQ=37;FQ=43;PV4=1,2.5e-09,1,1 GT:PL:GQ 0/1:70,0,255:73 chr1 47611598 . T C 136 . DP=77;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,24,21,16;MQ=55;FQ=139;PV4=0.17,2.2e-27,4.2e-05,1 GT:PL:GQ 0/1:166,0,255:99 chr1 47655816 . A G 24 . DP=5;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:56,9,0:15 chr1 47685455 . T C 192 . DP=32;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,25;MQ=59;FQ=-123 GT:PL:GQ 1/1:225,96,0:99 chr1 47689684 . A G 171 . DP=58;VDB=0.0398;AF1=0.5;AC1=1;DP4=10,18,13,15;MQ=60;FQ=174;PV4=0.59,2.1e-13,0.16,0.38 GT:PL:GQ 0/1:201,0,255:99 chr1 47689842 . C G 15.9 . DP=3;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,0,2;MQ=47;FQ=-33 GT:PL:GQ 1/1:47,6,0:10 chr1 47691568 . GCAGACAGACAGACA GCAGACAGACA 214 . INDEL;DP=22;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,13;MQ=55;FQ=-94.5 GT:PL:GQ 1/1:255,60,0:99 chr1 47717189 . A G 221 . DP=148;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,67,78;MQ=59;FQ=-282 GT:PL:GQ 1/1:254,255,0:99 chr1 47735280 . T C 179 . DP=18;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,17,0;MQ=60;FQ=-78 GT:PL:GQ 1/1:212,51,0:99 chr1 47753405 . G A 85 . DP=20;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,19;MQ=60;FQ=-87 GT:PL:GQ 1/1:118,60,0:99 chr1 47770786 . T A 52 . DP=9;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:85,24,0:45 chr1 47841038 . GAAAAAAA GAAAAAAAA 52.5 . INDEL;DP=14;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,2,10;MQ=60;FQ=-70.5 GT:PL:GQ 1/1:93,36,0:69 chr1 47841109 . T C 21.5 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:54,12,0:21 chr1 47842431 . G A 116 . DP=16;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,5;MQ=60;FQ=-72 GT:PL:GQ 1/1:149,45,0:87 chr1 47904909 . G C 81 . DP=8;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:114,24,0:45 chr1 48459907 . C T 222 . DP=115;VDB=0.0392;AF1=1;AC1=2;DP4=1,0,62,49;MQ=60;FQ=-282;PV4=1,0.0016,0.46,1 GT:PL:GQ 1/1:255,255,0:99 chr1 48697733 . T G 222 . DP=70;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,23,45;MQ=59;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr1 48697751 . C T 225 . DP=64;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,19,9,23;MQ=59;FQ=225;PV4=0.59,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 48707838 . A G 218 . DP=23;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,22;MQ=60;FQ=-96 GT:PL:GQ 1/1:251,69,0:99 chr1 48764419 . C T 225 . DP=71;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,22,12,12;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 48902552 . G A 66 . DP=28;VDB=0.0284;AF1=0.5;AC1=1;DP4=9,9,3,6;MQ=51;FQ=69;PV4=0.68,1.3e-07,1.2e-05,0.084 GT:PL:GQ 0/1:96,0,255:99 chr1 48902977 . G C 97 . DP=19;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,17;MQ=35;FQ=-81 GT:PL:GQ 1/1:130,54,0:99 chr1 49224584 . G T 222 . DP=43;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,13;MQ=60;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 49242447 . C T 15.1 . DP=8;VDB=0.0033;AF1=0.5;AC1=1;DP4=2,4,1,1;MQ=60;FQ=18.1;PV4=1,1,1,0.017 GT:PL:GQ 0/1:45,0,147:48 chr1 49332724 . A C 222 . DP=64;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,42,17;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 49332969 . A G 96 . DP=20;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,2,16;MQ=60;FQ=-81 GT:PL:GQ 1/1:129,54,0:99 chr1 50331725 . T C 63.1 . DP=8;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:96,21,0:39 chr1 50661411 . C T 190 . DP=85;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,53;MQ=60;FQ=-265 GT:PL:GQ 1/1:223,238,0:99 chr1 50666515 . C T 104 . DP=38;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,17,5;MQ=60;FQ=-93 GT:PL:GQ 1/1:137,66,0:99 chr1 50884778 . G A 24 . DP=4;VDB=0.0276;AF1=1;AC1=2;DP4=0,0,0,3;MQ=52;FQ=-36 GT:PL:GQ 1/1:56,9,0:15 chr1 50956163 . aaaggaaggaaggaaggaaggaaggaagg aaaggaaggaaggaaggaaggaagg 190 . INDEL;DP=45;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,24,1;MQ=33;FQ=-110 GT:PL:GQ 1/1:231,75,0:99 chr1 50956212 . CAAATACA CAAATACAGTGGAAATACA 214 . INDEL;DP=99;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,51,8;MQ=30;FQ=-213 GT:PL:GQ 1/1:255,178,0:99 chr1 50957509 . A T 75 . DP=14;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:108,39,0:75 chr1 51702565 . T C 222 . DP=23;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,3,5,11;MQ=60;FQ=71;PV4=0.62,1,1,1 GT:PL:GQ 0/1:252,0,98:99 chr1 51873951 . G A 224 . DP=65;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,33,5,18;MQ=59;FQ=224;PV4=1,1,0.33,1 GT:PL:GQ 0/1:254,0,255:99 chr1 51924174 . C A 13.2 . DP=4;VDB=0.0086;AF1=0.5;AC1=1;DP4=1,1,1,1;MQ=60;FQ=15.9;PV4=1,0.069,1,1 GT:PL:GQ 0/1:43,0,56:45 chr1 52266242 . G A 196 . DP=66;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,34,31;MQ=60;FQ=-223 GT:PL:GQ 1/1:229,196,0:99 chr1 52279650 . T G 222 . DP=54;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,31,21;MQ=59;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 52289220 . TGTATTAAGGTCAAG TG 84.5 . INDEL;DP=8;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,8,0;MQ=29;FQ=-58.5 GT:PL:GQ 1/1:125,24,0:45 chr1 52290984 . T G 84.1 . DP=6;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-45 GT:PL:GQ 1/1:117,18,0:33 chr1 52293570 . G A 222 . DP=62;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,51;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 52293638 . G A 93 . DP=15;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,15;MQ=60;FQ=-72 GT:PL:GQ 1/1:126,45,0:87 chr1 52306063 . atcttcttcttcttc atcttcttcttc 214 . INDEL;DP=48;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,23;MQ=59;FQ=-164 GT:PL:GQ 1/1:255,129,0:99 chr1 52402856 . T G 36.5 . DP=4;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:69,12,0:21 chr1 52402956 . G A 179 . DP=79;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,62,15;MQ=58;FQ=-259 GT:PL:GQ 1/1:212,232,0:99 chr1 52489322 . G A 204 . DP=84;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,66;MQ=59;FQ=-271 GT:PL:GQ 1/1:237,244,0:99 chr1 52517412 . A G 150 . DP=83;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,58,17;MQ=59;FQ=-227;PV4=1,0.00058,1,0.35 GT:PL:GQ 1/1:183,200,0:99 chr1 52530736 . CTGTG CTG 201 . INDEL;DP=25;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,9,0,12;MQ=59;FQ=204;PV4=0.22,0.0092,1,1 GT:PL:GQ 0/1:239,0,255:99 chr1 52729425 . TCCCCCCCCCCCCCCC TCCCCCCCCCCCCCC 22.5 . INDEL;DP=39;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,6,12;MQ=60;FQ=-88.5 GT:PL:GQ 1/1:63,54,0:73 chr1 52820226 . G A 222 . DP=127;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,62,60;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 53072454 . T C,A 209 . DP=82;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,48,30;MQ=59;FQ=-259 GT:PL:GQ 1/1:242,232,0,241,212,238:99 chr1 53153432 . T C 121 . DP=53;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,7,23,6;MQ=59;FQ=124;PV4=0.52,7.3e-25,0.1,0.21 GT:PL:GQ 0/1:151,0,255:99 chr1 53222309 . CAGAG CAG 217 . INDEL;DP=37;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,15,3,13;MQ=60;FQ=217;PV4=0.71,0.013,1,0.062 GT:PL:GQ 0/1:255,0,255:99 chr1 53308665 . C G 144 . DP=19;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,7,11;MQ=60;FQ=-81 GT:PL:GQ 1/1:177,54,0:99 chr1 53320274 . G T 222 . DP=68;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,33,34;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr1 53323492 . C A 128 . DP=25;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,21;MQ=60;FQ=-96 GT:PL:GQ 1/1:161,69,0:99 chr1 53333116 . A G 151 . DP=10;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:184,27,0:51 chr1 53364976 . A G 181 . DP=47;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,7,38;MQ=59;FQ=-162 GT:PL:GQ 1/1:214,135,0:99 chr1 53365039 . A G 15.1 . DP=20;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,13,0,6;MQ=58;FQ=18.1;PV4=1,1.2e-10,1,1 GT:PL:GQ 0/1:45,0,172:48 chr1 53535478 . G A 33 . DP=6;VDB=0.0215;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=35.9;PV4=1,0.059,1,0.37 GT:PL:GQ 0/1:63,0,78:66 chr1 53537097 . T G 54 . DP=55;VDB=0.0190;AF1=0.5;AC1=1;DP4=30,2,18,2;MQ=59;FQ=57;PV4=0.63,1.9e-08,0.37,1 GT:PL:GQ 0/1:84,0,204:87 chr1 53537266 . G A 225 . DP=106;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,35,18,28;MQ=60;FQ=225;PV4=0.84,0.12,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 53543112 . C G 26.3 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:59,15,0:27 chr1 53544439 . G A 222 . DP=110;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,37,68;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 53544597 . T C 222 . DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,2,13;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr1 53553702 . A G 222 . DP=22;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,14,7;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 53553754 . T C 181 . DP=23;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,14,7;MQ=60;FQ=-90 GT:PL:GQ 1/1:214,63,0:99 chr1 53555783 . A C 119 . DP=19;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,18;MQ=60;FQ=-84 GT:PL:GQ 1/1:152,57,0:99 chr1 53558270 . A G 222 . DP=60;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,29,24;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr1 53574123 . C T 18.8 . DP=2;VDB=0.0182;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:50,6,0:10 chr1 53755117 . G A 148 . DP=23;VDB=0.0190;AF1=0.5;AC1=1;DP4=9,1,12,1;MQ=60;FQ=143;PV4=1,0.26,1,1 GT:PL:GQ 0/1:178,0,171:99 chr1 53792651 . A C 154 . DP=76;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,33,8,21;MQ=59;FQ=157;PV4=1,8.1e-16,0.38,1 GT:PL:GQ 0/1:184,0,255:99 chr1 53930360 . G A 40 . DP=11;VDB=0.0287;AF1=0.5;AC1=1;DP4=7,0,3,1;MQ=60;FQ=43;PV4=0.36,0.14,1,1 GT:PL:GQ 0/1:70,0,123:73 chr1 53974987 . G T 40.3 . DP=5;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:73,15,0:27 chr1 53980389 . C T 172 . DP=58;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,6,25,11;MQ=60;FQ=175;PV4=1,1.3e-10,1,1 GT:PL:GQ 0/1:202,0,243:99 chr1 53990321 . C T 139 . DP=10;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:172,27,0:51 chr1 54060016 . G C 125 . DP=30;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,6,7,10;MQ=60;FQ=128;PV4=1,8.6e-08,1,0.16 GT:PL:GQ 0/1:155,0,197:99 chr1 54060248 . T C 79 . DP=20;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,7,4,4;MQ=59;FQ=82;PV4=1,7.5e-06,0.12,1 GT:PL:GQ 0/1:109,0,241:99 chr1 54258880 . C T 225 . DP=44;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,14,8,15;MQ=59;FQ=225;PV4=0.74,0.26,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 54284814 . C T 16.1 . DP=22;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,14,0,6;MQ=60;FQ=19.1;PV4=1,4.5e-09,1,1 GT:PL:GQ 0/1:46,0,238:49 chr1 54298297 . T C 141 . DP=35;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,8,8,11;MQ=60;FQ=144;PV4=0.74,4.2e-13,1,1 GT:PL:GQ 0/1:171,0,255:99 chr1 54304054 . C A 3.01 . DP=11;VDB=0.0104;AF1=0.4997;AC1=1;DP4=2,7,1,1;MQ=60;FQ=4.77;PV4=0.49,0.0062,1,1 GT:PL:GQ 0/1:30,0,185:28 chr1 54331763 . A G 12.3 . DP=8;VDB=0.0002;AF1=0.5;AC1=1;DP4=4,0,3,0;MQ=60;FQ=15.1;PV4=1,0.0099,1,0.09 GT:PL:GQ 0/1:42,0,101:44 chr1 54344282 . C A 170 . DP=49;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,40,8;MQ=60;FQ=-171 GT:PL:GQ 1/1:203,144,0:99 chr1 54354658 . T G 33 . DP=42;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,17,1,21;MQ=60;FQ=36;PV4=1,1.1e-17,1,1 GT:PL:GQ 0/1:63,0,191:66 chr1 54356106 . G A 95 . DP=83;VDB=0.0365;AF1=0.5;AC1=1;DP4=38,8,29,4;MQ=60;FQ=98;PV4=0.75,7.7e-24,1,1 GT:PL:GQ 0/1:125,0,255:99 chr1 54356341 . C G 78 . DP=15;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,9,0,6;MQ=57;FQ=81;PV4=1,1,0.035,1 GT:PL:GQ 0/1:108,0,157:99 chr1 54356347 . A T 14.2 . DP=14;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,8,0,5;MQ=56;FQ=17.1;PV4=1,6.7e-05,0.029,1 GT:PL:GQ 0/1:44,0,142:47 chr1 54370306 . G A 56 . DP=32;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,2,16,0;MQ=58;FQ=59;PV4=0.23,7.3e-15,1,0.2 GT:PL:GQ 0/1:86,0,218:89 chr1 54375570 . C A 181 . DP=85;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,42,38;MQ=60;FQ=-268 GT:PL:GQ 1/1:214,241,0:99 chr1 54375701 . C T 83 . DP=39;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,16,1,17;MQ=60;FQ=86;PV4=0.19,2.7e-08,1,1 GT:PL:GQ 0/1:113,0,255:99 chr1 54389774 . TAGAG TAG 52.2 . INDEL;DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:91,6,0:10 chr1 54514223 . T C 33 . DP=5;VDB=0.0027;AF1=0.5006;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-3.53;PV4=1,0.0074,1,0.19 GT:PL:GQ 0/1:63,0,26:29 chr1 54605319 . G GC 11.8 . INDEL;DP=47;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,10,14,9;MQ=59;FQ=11.3;PV4=0.76,1,1,0.47 GT:PL:GQ 0/1:49,0,48:48 chr1 54606804 . C T 155 . DP=37;VDB=0.0393;AF1=0.5;AC1=1;DP4=12,3,14,7;MQ=59;FQ=158;PV4=0.47,2.3e-09,0.2,1 GT:PL:GQ 0/1:185,0,218:99 chr1 54607051 . A G 203 . DP=81;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,44,31;MQ=59;FQ=-253 GT:PL:GQ 1/1:236,226,0:99 chr1 54607157 . G A 111 . DP=46;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,14,2,25;MQ=60;FQ=114;PV4=0.2,2.5e-08,1,0.12 GT:PL:GQ 0/1:141,0,230:99 chr1 54610389 . C G 225 . DP=108;VDB=0.0322;AF1=0.5;AC1=1;DP4=26,37,15,30;MQ=60;FQ=225;PV4=0.43,1,0.12,1 GT:PL:GQ 0/1:255,0,255:99 chr1 54618435 . A T 176 . DP=105;VDB=0.0365;AF1=0.5;AC1=1;DP4=34,18,34,17;MQ=60;FQ=179;PV4=1,7e-25,1,1 GT:PL:GQ 0/1:206,0,255:99 chr1 54637167 . T C 53.3 . DP=8;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:86,15,0:27 chr1 54661150 . C T 109 . DP=43;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,8,10,14;MQ=59;FQ=112;PV4=0.53,3.4e-11,1,1 GT:PL:GQ 0/1:139,0,255:99 chr1 54661262 . C T 72 . DP=31;VDB=0.0373;AF1=0.5;AC1=1;DP4=8,12,5,5;MQ=59;FQ=75;PV4=0.71,2.1e-08,1,0.26 GT:PL:GQ 0/1:102,0,255:99 chr1 54681920 . G C 225 . DP=40;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,13,9,16;MQ=60;FQ=162;PV4=0.16,1,1,1 GT:PL:GQ 0/1:255,0,189:99 chr1 54683856 . C G 50 . DP=77;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,32,8,17;MQ=60;FQ=53;PV4=0.57,2.8e-32,1,1 GT:PL:GQ 0/1:80,0,255:83 chr1 54683925 . G A 108 . DP=33;VDB=0.0373;AF1=0.5;AC1=1;DP4=2,12,2,16;MQ=60;FQ=111;PV4=1,8.8e-16,1,0.0038 GT:PL:GQ 0/1:138,0,225:99 chr1 54686374 . T C 186 . DP=65;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,35,30;MQ=60;FQ=-223 GT:PL:GQ 1/1:219,196,0:99 chr1 54686464 . C T 225 . DP=49;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,13,11,11;MQ=60;FQ=225;PV4=1,0.053,1,0.45 GT:PL:GQ 0/1:255,0,255:99 chr1 54690954 . T C 220 . DP=81;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,31,45;MQ=60;FQ=-256 GT:PL:GQ 1/1:253,229,0:99 chr1 54692854 . AGGGGGGGGGG AGGGGGGGGGGGG 106 . INDEL;DP=24;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,7,6;MQ=60;FQ=-73.5 GT:PL:GQ 1/1:147,39,0:75 chr1 54706733 . A G 217 . DP=74;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,17,56;MQ=60;FQ=-247 GT:PL:GQ 1/1:250,220,0:99 chr1 54870493 . GT G 5.08 . INDEL;DP=6;VDB=0.0305;AF1=0.5;AC1=1;DP4=1,3,2,0;MQ=60;FQ=7.36;PV4=0.4,1,1,1 GT:PL:GQ 0/1:41,0,92:41 chr1 55014099 . C T 222 . DP=17;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,11;MQ=60;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr1 55014160 . C T 134 . DP=11;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,3,7;MQ=60;FQ=-57 GT:PL:GQ 1/1:167,30,0:57 chr1 55058160 . G T 71 . DP=46;VDB=0.0081;AF1=0.5;AC1=1;DP4=19,7,18,1;MQ=59;FQ=74;PV4=0.11,4.7e-09,1,1 GT:PL:GQ 0/1:101,0,255:99 chr1 55066813 . c cAT 195 . INDEL;DP=6;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:235,18,0:33 chr1 55069986 . T C 198 . DP=14;VDB=0.0298;AF1=1;AC1=2;DP4=0,1,10,2;MQ=60;FQ=-44;PV4=0.23,1,1,0.19 GT:PL:GQ 1/1:231,17,0:31 chr1 55072726 . T C 29.8 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:61,6,0:10 chr1 55074840 . T A 222 . DP=36;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,2,30;MQ=59;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr1 55075452 . G A 222 . DP=31;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,10;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 55078046 . T C 45.5 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:78,12,0:21 chr1 55080612 . GGTGTGTGTGTGTGTG GGTGTGTGTGTG 179 . INDEL;DP=29;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,14;MQ=44;FQ=-73.5 GT:PL:GQ 1/1:255,74,35:75 chr1 55085499 . T C 9.08 . DP=4;VDB=0.0017;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:41,12,0:16 chr1 55100328 . T C 36.3 . DP=5;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,5,0;MQ=47;FQ=-42 GT:PL:GQ 1/1:69,15,0:27 chr1 55118566 . C G 160 . DP=49;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,23,23;MQ=59;FQ=-165 GT:PL:GQ 1/1:193,138,0:99 chr1 55119515 . T G 225 . DP=174;VDB=0.0392;AF1=0.5;AC1=1;DP4=42,44,54,30;MQ=59;FQ=225;PV4=0.046,0.28,0.12,1 GT:PL:GQ 0/1:255,0,255:99 chr1 55119546 . A G 222 . DP=166;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,79,83;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 55130931 . C T 39 . DP=19;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,9,1,7;MQ=60;FQ=42;PV4=1,1.1e-08,1,1 GT:PL:GQ 0/1:69,0,192:72 chr1 55130946 . G C 40 . DP=12;VDB=0.0008;AF1=0.5;AC1=1;DP4=1,6,1,4;MQ=60;FQ=43;PV4=1,1.6e-06,1,1 GT:PL:GQ 0/1:70,0,163:73 chr1 55130972 . C T 72.1 . DP=8;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,2,4;MQ=60;FQ=-45 GT:PL:GQ 1/1:105,18,0:33 chr1 55134379 . C T 69.1 . DP=7;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:102,21,0:39 chr1 55134487 . G A 76 . DP=85;VDB=0.0298;AF1=0.5;AC1=1;DP4=40,15,19,8;MQ=60;FQ=79;PV4=1,2.2e-18,1,1 GT:PL:GQ 0/1:106,0,255:99 chr1 55136529 . T C 193 . DP=32;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,6,8,6;MQ=59;FQ=196;PV4=1,0.084,0.15,1 GT:PL:GQ 0/1:223,0,255:99 chr1 55139618 . G A 89 . DP=15;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,4,6,3;MQ=60;FQ=92;PV4=0.31,4.4e-06,1,1 GT:PL:GQ 0/1:119,0,143:99 chr1 55139741 . A G 222 . DP=25;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,10,14;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 55165942 . G A 118 . DP=103;VDB=0.0400;AF1=0.5;AC1=1;DP4=24,30,20,27;MQ=60;FQ=121;PV4=1,1.2e-28,1,0.24 GT:PL:GQ 0/1:148,0,255:99 chr1 55166842 . C T 39 . DP=22;VDB=0.0066;AF1=0.5;AC1=1;DP4=10,0,9,2;MQ=58;FQ=42;PV4=0.48,5.5e-13,1,1 GT:PL:GQ 0/1:69,0,157:72 chr1 55167064 . C T 136 . DP=15;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,6,2,6;MQ=60;FQ=117;PV4=1,0.47,1,1 GT:PL:GQ 0/1:166,0,144:99 chr1 55167773 . T A 222 . DP=44;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,18,26;MQ=59;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 55182300 . T A 222 . DP=34;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,16,18;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 55224131 . T C 172 . DP=83;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,22,16,25;MQ=60;FQ=175;PV4=0.66,2.7e-22,1,0.21 GT:PL:GQ 0/1:202,0,255:99 chr1 55224751 . C A 99 . DP=46;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,13,8,16;MQ=59;FQ=102;PV4=0.76,1.5e-17,1,1 GT:PL:GQ 0/1:129,0,255:99 chr1 55251689 . T C 158 . DP=21;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,18,3;MQ=60;FQ=-90 GT:PL:GQ 1/1:191,63,0:99 chr1 55253346 . G A 90 . DP=29;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,1,11,4;MQ=60;FQ=93;PV4=0.33,5e-12,1,0.32 GT:PL:GQ 0/1:120,0,182:99 chr1 55253575 . T C 185 . DP=28;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,6,20;MQ=60;FQ=-105 GT:PL:GQ 1/1:218,78,0:99 chr1 55253594 . G A 74 . DP=20;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,11,3,5;MQ=60;FQ=77;PV4=0.26,0.0014,1,0.46 GT:PL:GQ 0/1:104,0,181:99 chr1 55266797 . G C 139 . DP=59;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,24,10,17;MQ=60;FQ=142;PV4=0.26,3.4e-15,1,1 GT:PL:GQ 0/1:169,0,255:99 chr1 55266845 . C T 69 . DP=41;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,18,1,17;MQ=59;FQ=72;PV4=0.36,2.9e-11,1,0.11 GT:PL:GQ 0/1:99,0,255:99 chr1 55273580 . G T 138 . DP=51;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,11,13,10;MQ=60;FQ=141;PV4=0.78,8.8e-15,1,0.39 GT:PL:GQ 0/1:168,0,255:99 chr1 55277599 . T C 222 . DP=46;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,27,19;MQ=58;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 55282556 . A G 4.13 . DP=9;VDB=0.0040;AF1=0.4998;AC1=1;DP4=6,0,3,0;MQ=60;FQ=6.2;PV4=1,3.6e-05,1,0.48 GT:PL:GQ 0/1:32,0,123:31 chr1 55307501 . A G 17.1 . DP=75;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,24,8,10;MQ=58;FQ=20.1;PV4=1,1.7e-21,1,1 GT:PL:GQ 0/1:47,0,255:50 chr1 55318108 . C T 182 . DP=17;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,6,2,9;MQ=60;FQ=91;PV4=0.51,0.22,1,0.38 GT:PL:GQ 0/1:212,0,118:99 chr1 55319008 . T C 30 . DP=9;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,0,5,1;MQ=60;FQ=30.9;PV4=1,0.013,1,0.23 GT:PL:GQ 0/1:60,0,62:61 chr1 55319902 . A G 155 . DP=47;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,16,7,15;MQ=59;FQ=158;PV4=1,1.4e-17,0.46,0.26 GT:PL:GQ 0/1:185,0,255:99 chr1 55330966 . T C 67 . DP=12;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,11,0;MQ=58;FQ=-60 GT:PL:GQ 1/1:100,33,0:63 chr1 55446664 . G C 82 . DP=15;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,15,0;MQ=58;FQ=-72 GT:PL:GQ 1/1:115,45,0:87 chr1 55446671 . C T 82 . DP=20;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,19,0;MQ=59;FQ=-84 GT:PL:GQ 1/1:115,57,0:99 chr1 55446697 . G A 149 . DP=28;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,25,2;MQ=59;FQ=-108 GT:PL:GQ 1/1:182,81,0:99 chr1 55457710 . G A 222 . DP=63;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,47;MQ=60;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr1 55457815 . C T 127 . DP=18;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,1,17;MQ=60;FQ=-81 GT:PL:GQ 1/1:160,54,0:99 chr1 55464743 . T C 96 . DP=20;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,19,0;MQ=60;FQ=-84 GT:PL:GQ 1/1:129,57,0:99 chr1 55464790 . C G 119 . DP=42;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,40,2;MQ=59;FQ=-153 GT:PL:GQ 1/1:152,126,0:99 chr1 55474262 . G A 171 . DP=75;VDB=0.0398;AF1=0.5;AC1=1;DP4=19,14,23,14;MQ=60;FQ=174;PV4=0.81,9.7e-20,1,0.48 GT:PL:GQ 0/1:201,0,255:99 chr1 55474325 . A C 225 . DP=81;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,18,15,22;MQ=60;FQ=225;PV4=0.18,1,1,0.41 GT:PL:GQ 0/1:255,0,255:99 chr1 55505651 . C T 26 . DP=7;VDB=0.0215;AF1=0.5;AC1=1;DP4=4,0,2,1;MQ=60;FQ=29;PV4=0.43,0.00083,1,1 GT:PL:GQ 0/1:56,0,99:59 chr1 55505732 . A G 61.1 . DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:94,21,0:39 chr1 55516781 . G T 222 . DP=51;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,33,14;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 55518166 . G A 115 . DP=10;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,1,1,5;MQ=60;FQ=57;PV4=0.19,1,1,1 GT:PL:GQ 0/1:145,0,84:87 chr1 55518316 . C T 173 . DP=38;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,4,13,10;MQ=60;FQ=172;PV4=0.49,1.5e-09,1,1 GT:PL:GQ 0/1:203,0,202:99 chr1 55518467 . A G 123 . DP=22;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,7,4,9;MQ=60;FQ=126;PV4=1,2.5e-05,1,1 GT:PL:GQ 0/1:153,0,165:99 chr1 55523033 . A G 201 . DP=43;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,22;MQ=60;FQ=-153 GT:PL:GQ 1/1:234,126,0:99 chr1 55524237 . G A 30.8 . DP=2;VDB=0.0076;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:62,6,0:10 chr1 55527323 . G A 142 . DP=25;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,14,1,9;MQ=59;FQ=136;PV4=0.42,1,1,0.2 GT:PL:GQ 0/1:172,0,164:99 chr1 55529187 . G A 116 . DP=22;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,18;MQ=59;FQ=-87 GT:PL:GQ 1/1:149,60,0:99 chr1 55537474 . C G 118 . DP=25;VDB=0.0216;AF1=0.5;AC1=1;DP4=10,2,7,5;MQ=60;FQ=121;PV4=0.37,3.5e-09,1,0.13 GT:PL:GQ 0/1:148,0,219:99 chr1 55538385 . T C 103 . DP=33;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,30,1;MQ=59;FQ=-120 GT:PL:GQ 1/1:136,93,0:99 chr1 55538552 . T G 104 . DP=80;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,32,12,27;MQ=59;FQ=107;PV4=0.18,1.8e-32,1,0.32 GT:PL:GQ 0/1:134,0,255:99 chr1 55541174 . A G 168 . DP=34;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,14,1,14;MQ=59;FQ=171;PV4=0.2,1,0.13,1 GT:PL:GQ 0/1:198,0,255:99 chr1 55543099 . T C 75 . DP=70;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,24,8,27;MQ=60;FQ=78;PV4=0.59,6.8e-33,0.16,1 GT:PL:GQ 0/1:105,0,255:99 chr1 55557859 . A ATT 126 . INDEL;DP=6;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,4;MQ=54;FQ=-46.5 GT:PL:GQ 1/1:166,12,0:21 chr1 55557864 . C T 54 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,0,3;MQ=52;FQ=-36 GT:PL:GQ 1/1:86,9,0:16 chr1 55558661 . A G 14.2 . DP=4;VDB=0.0116;AF1=0.5006;AC1=1;DP4=0,1,0,3;MQ=60;FQ=-3.57;PV4=1,0.0026,1,1 GT:PL:GQ 0/1:44,0,26:29 chr1 55562125 . G T 10.2 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:41,6,0:8 chr1 55564026 . T C 12.3 . DP=12;VDB=0.0004;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=60;FQ=15.1;PV4=1,7.3e-07,1,0.38 GT:PL:GQ 0/1:42,0,108:44 chr1 55567143 . T C 83 . DP=8;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:116,24,0:45 chr1 55567410 . A G 174 . DP=83;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,26,50;MQ=59;FQ=-256 GT:PL:GQ 1/1:207,229,0:99 chr1 55572867 . G A 162 . DP=70;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,10,31,8;MQ=60;FQ=165;PV4=0.27,1.7e-15,1,1 GT:PL:GQ 0/1:192,0,255:99 chr1 55590348 . A G 180 . DP=19;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,7,3,7;MQ=60;FQ=163;PV4=1,0.42,1,0.4 GT:PL:GQ 0/1:210,0,190:99 chr1 55591283 . C A 225 . DP=70;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,8,22,16;MQ=60;FQ=225;PV4=0.21,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 55631650 . G T 62 . DP=30;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,17,2,11;MQ=59;FQ=65;PV4=0.18,6.7e-14,1,0.37 GT:PL:GQ 0/1:92,0,179:95 chr1 55638075 . G A 220 . DP=69;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,55,12;MQ=59;FQ=-229 GT:PL:GQ 1/1:253,202,0:99 chr1 55643837 . TAAAA TAAA 81.5 . INDEL;DP=19;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,17;MQ=60;FQ=-85.5 GT:PL:GQ 1/1:122,51,0:99 chr1 55691384 . T C 196 . DP=21;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,10,10;MQ=60;FQ=-87 GT:PL:GQ 1/1:229,60,0:99 chr1 55691431 . G A 59 . DP=22;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,6,3,7;MQ=60;FQ=62;PV4=0.66,8.9e-10,1,1 GT:PL:GQ 0/1:89,0,236:92 chr1 56977819 . G A 3.01 . DP=5;VDB=0.0090;AF1=0.4997;AC1=1;DP4=0,3,0,2;MQ=60;FQ=4.77;PV4=1,0.0032,1,0.35 GT:PL:GQ 0/1:30,0,88:28 chr1 57111169 . C G 88.1 . DP=7;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:121,18,0:33 chr1 57158293 . G A 42.5 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:75,12,0:21 chr1 57170229 . T C 184 . DP=10;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:217,27,0:51 chr1 57185818 . A G 222 . DP=22;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,14,3;MQ=59;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr1 57224460 . G C 160 . DP=42;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,11,5,7;MQ=59;FQ=163;PV4=0.31,0.031,1,0.41 GT:PL:GQ 0/1:190,0,255:99 chr1 57258485 . A G 104 . DP=29;VDB=0.0373;AF1=0.5;AC1=1;DP4=8,6,7,8;MQ=59;FQ=107;PV4=0.72,4e-10,1,1 GT:PL:GQ 0/1:134,0,246:99 chr1 57340727 . C A 94 . DP=30;VDB=0.0384;AF1=0.5;AC1=1;DP4=7,8,4,9;MQ=60;FQ=97;PV4=0.46,1.9e-10,1,0.4 GT:PL:GQ 0/1:124,0,255:99 chr1 57372591 . C T 149 . DP=9;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:182,27,0:51 chr1 57383358 . C T 148 . DP=26;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,7,6,10;MQ=60;FQ=147;PV4=0.66,2e-10,1,1 GT:PL:GQ 0/1:178,0,176:99 chr1 57395251 . T C 222 . DP=38;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,23,13;MQ=59;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 57397301 . G A 46 . DP=8;VDB=0.0020;AF1=0.5;AC1=1;DP4=5,0,3,0;MQ=60;FQ=49;PV4=1,1,1,1 GT:PL:GQ 0/1:76,0,103:79 chr1 57406392 . T C 12.3 . DP=6;VDB=0.0141;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=15.1;PV4=1,0.012,1,1 GT:PL:GQ 0/1:42,0,73:44 chr1 57422484 . C T 222 . DP=88;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,31,54;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 57477034 . G C 112 . DP=10;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,2,0,7;MQ=57;FQ=20.1;PV4=1,0.36,0.31,0.1 GT:PL:GQ 0/1:142,0,47:50 chr1 57489137 . T C 50 . DP=18;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,0,9,0;MQ=60;FQ=53;PV4=1,1.5e-08,1,0.24 GT:PL:GQ 0/1:80,0,138:83 chr1 57528772 . A G 86 . DP=17;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,2,15;MQ=60;FQ=-78 GT:PL:GQ 1/1:119,51,0:99 chr1 57535198 . C A 35 . DP=32;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,15,0,17;MQ=60;FQ=38;PV4=1,2.4e-26,1,0.07 GT:PL:GQ 0/1:65,0,176:68 chr1 58996203 . T C 65 . DP=47;VDB=0.0118;AF1=0.5;AC1=1;DP4=25,5,15,2;MQ=60;FQ=68;PV4=1,8e-24,1,1 GT:PL:GQ 0/1:95,0,255:98 chr1 59004979 . C T 159 . DP=23;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,20;MQ=60;FQ=-96 GT:PL:GQ 1/1:192,69,0:99 chr1 59125894 . A G 80 . DP=7;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,2,0,5;MQ=60;FQ=26;PV4=1,0.19,1,0.43 GT:PL:GQ 0/1:110,0,53:56 chr1 59125899 . G A 43 . DP=6;VDB=0.0180;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=29.9;PV4=1,0.2,1,1 GT:PL:GQ 0/1:73,0,57:60 chr1 59126676 . A C 4.77 . DP=5;VDB=0.0000;AF1=0.4999;AC1=1;DP4=2,0,3,0;MQ=60;FQ=6.37;PV4=1,0.015,1,1 GT:PL:GQ 0/1:33,0,40:33 chr1 59127024 . T G 225 . DP=38;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,6,14,8;MQ=60;FQ=225;PV4=1,0.016,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 59131311 . G T 63 . DP=31;VDB=0.0099;AF1=0.5;AC1=1;DP4=2,16,1,11;MQ=60;FQ=66;PV4=1,1.1e-10,1,0.45 GT:PL:GQ 0/1:93,0,237:96 chr1 59134586 . G C 225 . DP=51;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,12,13,17;MQ=59;FQ=225;PV4=0.77,0.081,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 59134607 . C CAG 214 . INDEL;DP=56;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,19,34;MQ=59;FQ=-189 GT:PL:GQ 1/1:255,154,0:99 chr1 59139223 . C G 104 . DP=91;VDB=0.0271;AF1=0.5;AC1=1;DP4=28,12,41,10;MQ=60;FQ=107;PV4=0.33,3.8e-38,0.19,1 GT:PL:GQ 0/1:134,0,255:99 chr1 59142713 . T C 81 . DP=57;VDB=0.0216;AF1=0.5;AC1=1;DP4=8,24,6,19;MQ=60;FQ=84;PV4=1,2.6e-29,1,1 GT:PL:GQ 0/1:111,0,255:99 chr1 59147420 . G A 78 . DP=9;VDB=0.0025;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=64.9;PV4=1,0.39,1,1 GT:PL:GQ 0/1:108,0,92:95 chr1 59147926 . T C 225 . DP=82;VDB=0.0398;AF1=0.5;AC1=1;DP4=23,18,19,22;MQ=60;FQ=225;PV4=0.51,0.39,1,0.089 GT:PL:GQ 0/1:255,0,255:99 chr1 59158632 . T C 16.1 . DP=17;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,8,0,8;MQ=60;FQ=19.1;PV4=1,2.3e-05,1,1 GT:PL:GQ 0/1:46,0,173:49 chr1 59160885 . A G 50 . DP=21;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,9,2,5;MQ=60;FQ=53;PV4=1,4e-05,1,1 GT:PL:GQ 0/1:80,0,255:83 chr1 59160982 . ATACTTA ATA 100 . INDEL;DP=11;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,8,2,1;MQ=58;FQ=103;PV4=0.055,6.7e-07,1,1 GT:PL:GQ 0/1:138,0,239:99 chr1 59248813 . G C 203 . DP=18;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,2,13;MQ=60;FQ=-72 GT:PL:GQ 1/1:236,45,0:87 chr1 59364615 . G C 110 . DP=22;VDB=0.0042;AF1=0.5;AC1=1;DP4=14,1,6,1;MQ=59;FQ=113;PV4=1,1,1,1 GT:PL:GQ 0/1:140,0,208:99 chr1 59364918 . G A 223 . DP=37;VDB=0.0373;AF1=0.5;AC1=1;DP4=7,9,11,8;MQ=60;FQ=224;PV4=0.51,0.0047,1,0.19 GT:PL:GQ 0/1:253,0,255:99 chr1 59787350 . T G 190 . DP=27;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,21;MQ=59;FQ=-105 GT:PL:GQ 1/1:223,78,0:99 chr1 59844471 . G A 222 . DP=122;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,76,41;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 60280749 . GT G 214 . INDEL;DP=31;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,15;MQ=60;FQ=-125 GT:PL:GQ 1/1:255,90,0:99 chr1 60299005 . T C 78 . DP=9;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:111,24,0:45 chr1 60299820 . C A 222 . DP=88;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,39,45;MQ=60;FQ=-280 GT:PL:GQ 1/1:255,253,0:99 chr1 60314648 . A C 41.5 . DP=4;VDB=0.0126;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:74,12,0:21 chr1 60330883 . C G 222 . DP=31;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,22;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 60373500 . G T 222 . DP=76;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,41,31;MQ=60;FQ=-218;PV4=1,0.18,1,0.27 GT:PL:GQ 1/1:255,191,0:99 chr1 60373666 . A C 80 . DP=19;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,17;MQ=60;FQ=-81 GT:PL:GQ 1/1:113,54,0:99 chr1 60466911 . ACAGCA ACA 214 . INDEL;DP=18;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,3,12;MQ=58;FQ=-79.5 GT:PL:GQ 1/1:255,45,0:87 chr1 60475930 . C G 222 . DP=37;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,30,7;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 60503762 . T C 187 . DP=23;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,22;MQ=60;FQ=-93 GT:PL:GQ 1/1:220,66,0:99 chr1 60505578 . A G 96 . DP=24;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,23,0;MQ=60;FQ=-96 GT:PL:GQ 1/1:129,69,0:99 chr1 61743160 . G A 225 . DP=96;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,26,24,24;MQ=60;FQ=225;PV4=0.68,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 61818422 . A G 84 . DP=11;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:117,33,0:63 chr1 61872541 . G A 54 . DP=20;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,10,1,9;MQ=60;FQ=57;PV4=1,3.3e-12,1,0.38 GT:PL:GQ 0/1:84,0,162:87 chr1 61892301 . TG TGG 214 . INDEL;DP=83;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,51,29;MQ=60;FQ=-276 GT:PL:GQ 1/1:255,241,0:99 chr1 61921185 . ATTTTTTTTTTTTT ATTTTTTTTTTTTTT,ATTTTTTTTTTTTTTT 8.17 . INDEL;DP=32;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,12;MQ=60;FQ=-73.5 GT:PL:GQ 1/1:48,39,0,46,26,43:43 chr1 62231924 . TTGAT TTGATGAT 80.5 . INDEL;DP=4;VDB=0.0049;AF1=0.5;AC1=1;DP4=1,0,3,0;MQ=54;FQ=13.7;PV4=1,1,0.33,0.26 GT:PL:GQ 0/1:118,0,48:51 chr1 62232031 . C T 199 . DP=35;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,9;MQ=57;FQ=-129 GT:PL:GQ 1/1:232,102,0:99 chr1 62253483 . G A 138 . DP=64;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,15,15,17;MQ=60;FQ=141;PV4=1,8.5e-21,1,0.42 GT:PL:GQ 0/1:168,0,255:99 chr1 62261168 . A G 222 . DP=83;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,40,40;MQ=60;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr1 62330080 . T G 222 . DP=88;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,48,34;MQ=59;FQ=-274 GT:PL:GQ 1/1:255,247,0:99 chr1 62330374 . A T 164 . DP=53;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,20,12,13;MQ=60;FQ=167;PV4=0.15,1.3e-16,1,0.36 GT:PL:GQ 0/1:194,0,255:99 chr1 62365217 . C T 14.2 . DP=47;VDB=0.0271;AF1=0.5;AC1=1;DP4=21,2,24,0;MQ=60;FQ=17.1;PV4=0.23,7.2e-32,1,1 GT:PL:GQ 0/1:44,0,240:47 chr1 62365428 . GAA GAAA 110 . INDEL;DP=16;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,6,0,9;MQ=60;FQ=51.5;PV4=1,1,1,0.31 GT:PL:GQ 0/1:148,0,86:89 chr1 62380270 . C T 225 . DP=77;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,19,17,19;MQ=59;FQ=225;PV4=0.82,1,1,0.32 GT:PL:GQ 0/1:255,0,255:99 chr1 62393394 . A G 225 . DP=140;VDB=0.0298;AF1=0.5;AC1=1;DP4=42,21,50,25;MQ=60;FQ=225;PV4=1,0.29,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 62483657 . C T 79 . DP=54;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,19,3,22;MQ=60;FQ=82;PV4=0.29,1.1e-20,0.16,0.12 GT:PL:GQ 0/1:109,0,255:99 chr1 62516683 . G C 166 . DP=182;VDB=0.0380;AF1=0.5;AC1=1;DP4=31,64,32,50;MQ=59;FQ=169;PV4=0.43,4.4e-57,0.16,1 GT:PL:GQ 0/1:196,0,255:99 chr1 62579823 . G A 123 . DP=50;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,10,15,10;MQ=59;FQ=126;PV4=1,5.2e-12,1,1 GT:PL:GQ 0/1:153,0,255:99 chr1 62644118 . A G 71 . DP=21;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,21;MQ=60;FQ=-90 GT:PL:GQ 1/1:104,63,0:99 chr1 62672546 . G A 49 . DP=32;VDB=0.0359;AF1=0.5;AC1=1;DP4=8,11,7,4;MQ=59;FQ=52;PV4=0.45,2.1e-09,0.097,0.31 GT:PL:GQ 0/1:79,0,255:82 chr1 62673037 . T C 225 . DP=94;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,28,22,20;MQ=60;FQ=225;PV4=0.53,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 62673225 . G A 225 . DP=44;VDB=0.0325;AF1=0.5;AC1=1;DP4=7,17,5,14;MQ=60;FQ=225;PV4=1,0.15,1,0.019 GT:PL:GQ 0/1:255,0,255:99 chr1 62675619 . C T 28 . DP=17;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,4,7,1;MQ=60;FQ=31;PV4=0.28,0.00017,1,1 GT:PL:GQ 0/1:58,0,177:61 chr1 62675892 . A G 114 . DP=109;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,38,20,27;MQ=60;FQ=117;PV4=0.56,5.5e-51,1,0.22 GT:PL:GQ 0/1:144,0,255:99 chr1 62676284 . C T 203 . DP=30;VDB=0.0081;AF1=0.5;AC1=1;DP4=10,8,6,6;MQ=59;FQ=206;PV4=1,0.34,0.11,1 GT:PL:GQ 0/1:233,0,255:99 chr1 62677048 . G T 55 . DP=14;VDB=0.0006;AF1=0.5;AC1=1;DP4=3,6,0,4;MQ=60;FQ=58;PV4=0.5,1,1,1 GT:PL:GQ 0/1:85,0,215:88 chr1 62713224 . C G 153 . DP=47;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,13,12,10;MQ=59;FQ=156;PV4=0.56,1e-11,0.16,0.41 GT:PL:GQ 0/1:183,0,255:99 chr1 62738885 . GGGAGGAGGAGGAGG GGGAGGAGGAGG 70.5 . INDEL;DP=5;VDB=0.0384;AF1=0.5;AC1=1;DP4=2,0,1,1;MQ=60;FQ=63.1;PV4=1,0.25,1,1 GT:PL:GQ 0/1:108,0,98:99 chr1 62939634 . C T 222 . DP=19;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,7;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr1 62941409 . T C 87 . DP=139;VDB=0.0345;AF1=0.5;AC1=1;DP4=48,29,37,23;MQ=60;FQ=90;PV4=1,3.1e-74,1,1 GT:PL:GQ 0/1:117,0,255:99 chr1 62953183 . C T 80 . DP=3;VDB=0.0098;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:112,9,0:16 chr1 62960101 . A G 128 . DP=43;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,8,4,23;MQ=60;FQ=131;PV4=0.034,1.4e-16,1,0.24 GT:PL:GQ 0/1:158,0,255:99 chr1 62961928 . T C 23 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:55,9,0:15 chr1 62976472 . T G 27.3 . DP=6;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:60,15,0:27 chr1 63001120 . A C 18.1 . DP=28;VDB=0.0216;AF1=0.5;AC1=1;DP4=15,0,11,1;MQ=60;FQ=21;PV4=0.44,2.3e-14,1,0.3 GT:PL:GQ 0/1:48,0,175:51 chr1 63027411 . AG A 131 . INDEL;DP=10;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-61.5 GT:PL:GQ 1/1:172,27,0:51 chr1 63044464 . C T 3.54 . DP=4;VDB=0.0141;AF1=0.4998;AC1=1;DP4=2,0,2,0;MQ=60;FQ=5.46;PV4=1,0.00086,1,0.21 GT:PL:GQ 0/1:31,0,63:30 chr1 63050598 . T G 65 . DP=17;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,6,2,9;MQ=60;FQ=67.9;PV4=0.51,1.6e-07,1,1 GT:PL:GQ 0/1:95,0,111:98 chr1 63066704 . TTGT TT 114 . INDEL;DP=12;VDB=0.0244;AF1=0.5;AC1=1;DP4=8,0,3,1;MQ=60;FQ=117;PV4=0.33,2.5e-12,1,0.024 GT:PL:GQ 0/1:152,0,247:99 chr1 63070537 . AGTTAATGTGGT AGT 37.5 . INDEL;DP=12;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,5,1,3;MQ=50;FQ=40.5;PV4=1,0.13,0,1 GT:PL:GQ 0/1:75,0,250:78 chr1 63090858 . C T 47 . DP=17;VDB=0.0025;AF1=0.5;AC1=1;DP4=9,0,8,0;MQ=60;FQ=50;PV4=1,2.9e-10,1,0.028 GT:PL:GQ 0/1:77,0,152:80 chr1 63099023 . T C 43 . DP=5;VDB=0.0003;AF1=0.5032;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-8.63;PV4=1,0.14,1,1 GT:PL:GQ 0/1:73,0,19:22 chr1 63113511 . C A 63 . DP=25;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,11,1,12;MQ=60;FQ=66;PV4=1,6.8e-13,1,1 GT:PL:GQ 0/1:93,0,193:96 chr1 63113719 . T C 128 . DP=17;VDB=0.0004;AF1=0.5;AC1=1;DP4=6,0,11,0;MQ=60;FQ=89;PV4=1,0.084,1,0.14 GT:PL:GQ 0/1:158,0,116:99 chr1 63871881 . A G 13.2 . DP=12;VDB=0.0140;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=58;FQ=16.1;PV4=1,1e-09,0.19,0.14 GT:PL:GQ 0/1:43,0,116:46 chr1 63872871 . A G 140 . DP=22;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,12,1,8;MQ=59;FQ=139;PV4=0.43,1,0.13,1 GT:PL:GQ 0/1:170,0,169:99 chr1 63881552 . C T 107 . DP=32;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,26,3;MQ=59;FQ=-114 GT:PL:GQ 1/1:140,87,0:99 chr1 63902431 . A G 53 . DP=30;VDB=0.0081;AF1=0.5;AC1=1;DP4=13,1,16,0;MQ=60;FQ=56;PV4=0.47,2.5e-15,1,1 GT:PL:GQ 0/1:83,0,195:86 chr1 63912563 . ACAATTCAA ACAA 62.5 . INDEL;DP=16;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,11,2,1;MQ=58;FQ=65.5;PV4=0.081,0.00016,0.02,0.2 GT:PL:GQ 0/1:100,0,255:99 chr1 63915343 . A G 225 . DP=25;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,0,11,5;MQ=60;FQ=92;PV4=0.13,1,1,1 GT:PL:GQ 0/1:255,0,119:99 chr1 63991267 . T C 210 . DP=18;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,1,7,4;MQ=60;FQ=113;PV4=0.6,0.12,1,0.35 GT:PL:GQ 0/1:240,0,140:99 chr1 63999087 . T C 41 . DP=12;VDB=0.0042;AF1=0.5;AC1=1;DP4=5,0,7,0;MQ=58;FQ=44;PV4=1,1.7e-08,1,0.17 GT:PL:GQ 0/1:71,0,107:74 chr1 64015217 . G A 225 . DP=32;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,7,11,7;MQ=53;FQ=219;PV4=0.48,0.28,0.0095,1 GT:PL:GQ 0/1:255,0,247:99 chr1 64095862 . G A 54 . DP=9;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=56.4;PV4=1,0.32,1,0.15 GT:PL:GQ 0/1:84,0,92:86 chr1 64097432 . C T 159 . DP=161;VDB=0.0399;AF1=0.5;AC1=1;DP4=46,38,37,37;MQ=60;FQ=162;PV4=0.63,1.1e-52,1,1 GT:PL:GQ 0/1:189,0,255:99 chr1 64114301 . T C 222 . DP=22;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,2,19;MQ=58;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 64117537 . G T 222 . DP=65;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,17,41;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 64125234 . G T 222 . DP=31;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,26,5;MQ=59;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 64125368 . C T 222 . DP=51;VDB=0.0398;AF1=1;AC1=2;DP4=1,0,18,29;MQ=59;FQ=-142;PV4=0.4,1,1,0.19 GT:PL:GQ 1/1:255,115,0:99 chr1 64125383 . G A 156 . DP=45;VDB=0.0398;AF1=0.5;AC1=1;DP4=8,15,9,12;MQ=59;FQ=159;PV4=0.76,1.9e-09,1,0.25 GT:PL:GQ 0/1:186,0,255:99 chr1 64125439 . A C 145 . DP=29;VDB=0.0298;AF1=1;AC1=2;DP4=0,1,4,23;MQ=59;FQ=-82;PV4=1,0.059,1,0.32 GT:PL:GQ 1/1:178,55,0:99 chr1 64515379 . C T 200 . DP=24;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,13,10;MQ=60;FQ=-96 GT:PL:GQ 1/1:233,69,0:99 chr1 64608329 . G T 222 . DP=75;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,29,46;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr1 64624612 . G A 179 . DP=19;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,19,0;MQ=60;FQ=-84 GT:PL:GQ 1/1:212,57,0:99 chr1 64624842 . A G 158 . DP=95;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,30,11,31;MQ=60;FQ=161;PV4=0.36,2.9e-29,1,1 GT:PL:GQ 0/1:188,0,255:99 chr1 64643277 . C T 225 . DP=72;VDB=0.0398;AF1=0.5;AC1=1;DP4=18,18,19,16;MQ=60;FQ=225;PV4=0.81,0.5,1,0.43 GT:PL:GQ 0/1:255,0,255:99 chr1 64669567 . A T 12.3 . DP=8;VDB=0.0110;AF1=0.5;AC1=1;DP4=2,2,3,0;MQ=60;FQ=15.1;PV4=0.43,0.0023,1,1 GT:PL:GQ 0/1:42,0,119:44 chr1 64680682 . C G 35 . DP=3;VDB=0.0157;AF1=0.5003;AC1=1;DP4=0,1,0,2;MQ=60;FQ=4.77;PV4=1,1,1,1 GT:PL:GQ 0/1:65,0,30:33 chr1 64726414 . A C 24 . DP=12;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,4,0,7;MQ=60;FQ=27;PV4=1,3.9e-08,1,0.13 GT:PL:GQ 0/1:54,0,97:57 chr1 65016349 . A T 222 . DP=90;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,37,49;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 65045602 . TAAAAAAAAAAAA TAAAAAAAAAAA 5.84 . INDEL;DP=15;VDB=0.0322;AF1=1;AC1=2;DP4=0,2,3,9;MQ=60;FQ=-55.5;PV4=1,0.0073,1,0.15 GT:PL:GQ 1/1:45,21,0:22 chr1 65068638 . T C 113 . DP=24;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,22;MQ=60;FQ=-96 GT:PL:GQ 1/1:146,69,0:99 chr1 65099978 . G A 73 . DP=17;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,16;MQ=59;FQ=-75 GT:PL:GQ 1/1:106,48,0:93 chr1 65107372 . C T 222 . DP=27;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,22,3;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 65113351 . T C 22 . DP=3;VDB=0.0050;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:54,9,0:15 chr1 65113568 . T C 222 . DP=44;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,21,23;MQ=59;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 65844963 . A G 203 . DP=25;VDB=0.0190;AF1=0.5;AC1=1;DP4=11,2,9,3;MQ=60;FQ=186;PV4=0.64,1,1,1 GT:PL:GQ 0/1:233,0,213:99 chr1 65858088 . T C 5.46 . DP=8;VDB=0.0215;AF1=0.4999;AC1=1;DP4=5,0,2,1;MQ=60;FQ=7.8;PV4=0.37,8.4e-05,1,1 GT:PL:GQ 0/1:34,0,110:34 chr1 65858145 . G A 25 . DP=18;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,4,4,2;MQ=60;FQ=28;PV4=1,0.00052,1,1 GT:PL:GQ 0/1:55,0,208:58 chr1 65860687 . A C 74 . DP=79;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,29,16,20;MQ=60;FQ=77;PV4=0.35,2.4e-40,1,1 GT:PL:GQ 0/1:104,0,255:99 chr1 65867391 . C G 225 . DP=49;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,8,14,13;MQ=60;FQ=225;PV4=0.56,1,0.19,0.43 GT:PL:GQ 0/1:255,0,255:99 chr1 65886398 . T C 51 . DP=8;VDB=0.0333;AF1=0.5;AC1=1;DP4=3,1,3,1;MQ=60;FQ=54;PV4=1,0.01,1,1 GT:PL:GQ 0/1:81,0,101:84 chr1 65886448 . T C 28 . DP=19;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,2,1,4;MQ=60;FQ=31;PV4=0.022,0.063,1,0.004 GT:PL:GQ 0/1:58,0,204:61 chr1 65887013 . A C 80 . DP=63;VDB=0.0322;AF1=0.5;AC1=1;DP4=29,8,23,2;MQ=60;FQ=83;PV4=0.18,1.4e-18,0.11,0.16 GT:PL:GQ 0/1:110,0,255:99 chr1 66036501 . G T 46 . DP=10;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:79,24,0:45 chr1 66062325 . A G 21 . DP=10;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,5,0,5;MQ=60;FQ=24;PV4=1,0.0053,1,1 GT:PL:GQ 0/1:51,0,91:54 chr1 66075952 . G C 49 . DP=12;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,5,0,7;MQ=60;FQ=52;PV4=1,2.4e-07,1,0.079 GT:PL:GQ 0/1:79,0,111:82 chr1 66085574 . T A 49 . DP=9;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,0,4,3;MQ=60;FQ=22;PV4=0.5,1.7e-06,1,0.14 GT:PL:GQ 0/1:79,0,49:52 chr1 66088701 . C A 44 . DP=12;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,5,1,5;MQ=60;FQ=47;PV4=1,8.3e-07,1,1 GT:PL:GQ 0/1:74,0,141:77 chr1 66102257 . G A 225 . DP=86;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,24,18,17;MQ=60;FQ=225;PV4=1,1,0.12,0.41 GT:PL:GQ 0/1:255,0,255:99 chr1 66102755 . ATTA ATTACTTTA 37.5 . INDEL;DP=4;VDB=0.0180;AF1=0.5;AC1=1;DP4=0,1,0,2;MQ=52;FQ=16.6;PV4=1,1,0.33,1 GT:PL:GQ 0/1:75,0,51:54 chr1 66731886 . G C 58 . DP=5;VDB=0.0156;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=28;PV4=1,1,1,1 GT:PL:GQ 0/1:88,0,55:58 chr1 66732386 . G A 114 . DP=52;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,11,12,11;MQ=60;FQ=117;PV4=0.58,1.2e-22,1,1 GT:PL:GQ 0/1:144,0,255:99 chr1 66732529 . A T 11.3 . DP=14;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,7,0,6;MQ=60;FQ=14.2;PV4=1,2.9e-11,1,0.13 GT:PL:GQ 0/1:41,0,144:43 chr1 66829262 . A G 130 . DP=66;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,33,6,21;MQ=60;FQ=133;PV4=0.3,8.5e-25,1,1 GT:PL:GQ 0/1:160,0,255:99 chr1 66831256 . CAA CAAA 182 . INDEL;DP=26;VDB=0.0190;AF1=0.5;AC1=1;DP4=11,0,13,2;MQ=59;FQ=86.5;PV4=0.49,1,0.2,0.11 GT:PL:GQ 0/1:220,0,121:99 chr1 66831370 . G A 135 . DP=108;VDB=0.0380;AF1=0.5;AC1=1;DP4=45,16,29,17;MQ=59;FQ=138;PV4=0.29,7.8e-34,0.2,0.47 GT:PL:GQ 0/1:165,0,255:99 chr1 67000103 . A G 222 . DP=62;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,14,45;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 67000162 . T G 93 . DP=28;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,26;MQ=60;FQ=-105 GT:PL:GQ 1/1:126,78,0:99 chr1 67094171 . G A 176 . DP=70;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,31,35;MQ=59;FQ=-226 GT:PL:GQ 1/1:209,199,0:99 chr1 67101802 . A G 110 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:143,18,0:33 chr1 67109335 . A G 149 . DP=75;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,60,14;MQ=60;FQ=-250 GT:PL:GQ 1/1:182,223,0:99 chr1 67126114 . A G 222 . DP=128;VDB=0.0345;AF1=1;AC1=2;DP4=1,0,79,44;MQ=59;FQ=-282;PV4=1,0.075,1,1 GT:PL:GQ 1/1:255,255,0:99 chr1 67136537 . C T 68 . DP=10;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:101,24,0:45 chr1 67142675 . T C 57 . DP=45;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,6,18,3;MQ=59;FQ=60;PV4=0.46,5.2e-11,0.16,1 GT:PL:GQ 0/1:87,0,255:90 chr1 67145322 . C A 222 . DP=126;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,94,26;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 67155862 . TCTCCT TCT 217 . INDEL;DP=93;VDB=0.0345;AF1=0.5;AC1=1;DP4=36,19,21,15;MQ=58;FQ=217;PV4=0.51,1.2e-15,2.8e-05,1 GT:PL:GQ 0/1:255,0,255:99 chr1 67160336 . A G 222 . DP=26;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,25;MQ=59;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 67160884 . A G 105 . DP=8;VDB=0.0004;AF1=0.5;AC1=1;DP4=2,0,6,0;MQ=54;FQ=14.2;PV4=1,1,1,1 GT:PL:GQ 0/1:135,0,41:44 chr1 67160981 . C T 51 . DP=51;VDB=0.0014;AF1=0.5;AC1=1;DP4=16,5,7,8;MQ=54;FQ=54;PV4=0.09,3.5e-18,1,0.45 GT:PL:GQ 0/1:81,0,255:84 chr1 67194911 . TTCTCTCTCT TTCTCTCT 217 . INDEL;DP=39;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,1,15,3;MQ=59;FQ=217;PV4=0.34,0.055,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr1 67266756 . T A 222 . DP=37;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,20,17;MQ=59;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 67288045 . C T 117 . DP=90;VDB=0.0345;AF1=0.5;AC1=1;DP4=32,12,31,11;MQ=60;FQ=120;PV4=1,2.7e-29,0.15,1 GT:PL:GQ 0/1:147,0,255:99 chr1 67292473 . A AT 69.5 . INDEL;DP=22;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,1,11,1;MQ=60;FQ=56.4;PV4=1,1,1,0.45 GT:PL:GQ 0/1:107,0,91:94 chr1 67292478 . T A 70 . DP=25;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,1,12,1;MQ=59;FQ=73;PV4=1,7.6e-12,1,1 GT:PL:GQ 0/1:100,0,188:99 chr1 67303303 . A G 34 . DP=8;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=20.9;PV4=1,0.0011,1,1 GT:PL:GQ 0/1:64,0,48:51 chr1 67390416 . G C 222 . DP=64;VDB=0.0399;AF1=1;AC1=2;DP4=1,0,26,33;MQ=60;FQ=-180;PV4=0.45,0.43,1,0.23 GT:PL:GQ 1/1:255,153,0:99 chr1 67390468 . C G 222 . DP=53;VDB=0.0322;AF1=1;AC1=2;DP4=0,1,13,37;MQ=60;FQ=-151;PV4=1,9.9e-05,1,0.28 GT:PL:GQ 1/1:255,124,0:99 chr1 67401623 . act a 217 . INDEL;DP=43;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,18,7,7;MQ=58;FQ=217;PV4=0.51,7.4e-21,0.033,1 GT:PL:GQ 0/1:255,0,255:99 chr1 67425311 . T G 49.1 . DP=6;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,1;MQ=60;FQ=-45 GT:PL:GQ 1/1:82,18,0:33 chr1 67487119 . C A 41 . DP=21;VDB=0.0118;AF1=0.5;AC1=1;DP4=6,1,13,0;MQ=60;FQ=44;PV4=0.35,2.1e-14,1,0.016 GT:PL:GQ 0/1:71,0,151:74 chr1 67487374 . TCCAacac Tc 33.5 . INDEL;DP=28;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,7,3,2;MQ=55;FQ=36.5;PV4=1,0.00011,1,0.02 GT:PL:GQ 0/1:71,0,255:74 chr1 67508080 . CCACTCA CCA 199 . INDEL;DP=27;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,11,0,13;MQ=53;FQ=202;PV4=1,2e-13,0.0012,0.12 GT:PL:GQ 0/1:237,0,255:99 chr1 67512903 . G T 182 . DP=22;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,16,6;MQ=60;FQ=-93 GT:PL:GQ 1/1:215,66,0:99 chr1 67512920 . A C 126 . DP=21;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,6;MQ=60;FQ=-90 GT:PL:GQ 1/1:159,63,0:99 chr1 67518420 . T A 87 . DP=53;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,4,18,4;MQ=60;FQ=90;PV4=0.71,1.1e-24,1,0.47 GT:PL:GQ 0/1:117,0,255:99 chr1 67518534 . C T 179 . DP=106;VDB=0.0392;AF1=0.5;AC1=1;DP4=24,29,30,22;MQ=60;FQ=182;PV4=0.24,6.6e-28,1,0.31 GT:PL:GQ 0/1:209,0,255:99 chr1 67558739 . C T 206 . DP=11;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,3;MQ=60;FQ=-57 GT:PL:GQ 1/1:239,30,0:57 chr1 67560897 . A G 132 . DP=38;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,36,2;MQ=59;FQ=-141 GT:PL:GQ 1/1:165,114,0:99 chr1 67560956 . C T 222 . DP=63;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,36,20;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 67562106 . G T 17.1 . DP=9;VDB=0.0161;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=60;FQ=20.1;PV4=1,8.9e-06,1,1 GT:PL:GQ 0/1:47,0,117:50 chr1 67577367 . A T 134 . DP=18;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,14;MQ=59;FQ=-81 GT:PL:GQ 1/1:167,54,0:99 chr1 67579386 . A G 126 . DP=11;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,8,3;MQ=60;FQ=-60 GT:PL:GQ 1/1:159,33,0:63 chr1 67591660 . G A 24 . DP=3;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:56,9,0:15 chr1 67633812 . G T 136 . DP=52;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,4,17,6;MQ=60;FQ=139;PV4=0.48,9.5e-16,1,1 GT:PL:GQ 0/1:166,0,255:99 chr1 67648460 . T C 222 . DP=37;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,25,11;MQ=60;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 67672765 . G A 105 . DP=37;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,17,4,13;MQ=59;FQ=108;PV4=0.68,4.2e-15,0.2,0.39 GT:PL:GQ 0/1:135,0,255:99 chr1 67685387 . T C 157 . DP=38;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,4,34;MQ=59;FQ=-141 GT:PL:GQ 1/1:190,114,0:99 chr1 67685443 . G A 22 . DP=13;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,6,0,6;MQ=60;FQ=25;PV4=1,3.1e-06,1,1 GT:PL:GQ 0/1:52,0,156:55 chr1 67705726 . A G 33 . DP=10;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:66,27,0:50 chr1 67795319 . T C 222 . DP=56;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,31,25;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 67852141 . A G 124 . DP=27;VDB=0.0118;AF1=0.5;AC1=1;DP4=16,0,11,0;MQ=59;FQ=127;PV4=1,1,1,0.26 GT:PL:GQ 0/1:154,0,179:99 chr1 67852335 . G A 225 . DP=122;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,39,25,35;MQ=60;FQ=225;PV4=0.35,0.42,1,0.42 GT:PL:GQ 0/1:255,0,255:99 chr1 67861520 . C A 89 . DP=81;VDB=0.0322;AF1=0.5;AC1=1;DP4=30,20,21,8;MQ=60;FQ=92;PV4=0.33,8.2e-26,1,1 GT:PL:GQ 0/1:119,0,255:99 chr1 68173264 . C T 181 . DP=96;VDB=0.0393;AF1=0.5;AC1=1;DP4=23,19,25,26;MQ=60;FQ=184;PV4=0.68,3.3e-28,1,0.2 GT:PL:GQ 0/1:211,0,255:99 chr1 68603731 . A G 222 . DP=22;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,3,18;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 68614013 . A G 132 . DP=40;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,36;MQ=60;FQ=-144 GT:PL:GQ 1/1:165,117,0:99 chr1 68624878 . C T 222 . DP=76;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,31,42;MQ=59;FQ=-222;PV4=1,1,1,0.23 GT:PL:GQ 1/1:255,195,0:99 chr1 68903942 . C T 74 . DP=38;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,16,3,17;MQ=59;FQ=77;PV4=0.61,1e-14,0.18,1 GT:PL:GQ 0/1:104,0,188:99 chr1 68904513 . A G 16.1 . DP=7;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,0,2,0;MQ=60;FQ=19.1;PV4=1,0.39,1,1 GT:PL:GQ 0/1:46,0,113:49 chr1 68905358 . G C 222 . DP=54;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,37;MQ=59;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 68943436 . G A 26 . DP=20;VDB=0.0143;AF1=0.5;AC1=1;DP4=9,7,4,0;MQ=59;FQ=29;PV4=0.25,0.28,1,0.057 GT:PL:GQ 0/1:56,0,255:59 chr1 68943442 . A G 32 . DP=21;VDB=0.0143;AF1=0.5;AC1=1;DP4=10,7,4,0;MQ=58;FQ=35;PV4=0.25,0.48,1,0.15 GT:PL:GQ 0/1:62,0,255:65 chr1 68943665 . T G 98 . DP=22;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,8,2,4;MQ=59;FQ=101;PV4=0.65,1,0.052,0.45 GT:PL:GQ 0/1:128,0,255:99 chr1 68947318 . CAAAAA CAAAAAA 83.5 . INDEL;DP=70;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,28,9,17;MQ=59;FQ=86.4;PV4=0.39,1,1,1 GT:PL:GQ 0/1:121,0,141:99 chr1 70034370 . CC CCAGCCGCGTGC 105 . INDEL;DP=35;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,0,20;MQ=31;FQ=-94.5 GT:PL:GQ 1/1:146,60,0:99 chr1 70304758 . A G 218 . DP=41;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,24,16;MQ=59;FQ=-147 GT:PL:GQ 1/1:251,120,0:99 chr1 70397087 . T C 222 . DP=118;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,78,33;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 70587360 . C T 178 . DP=11;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,9,1;MQ=58;FQ=-57 GT:PL:GQ 1/1:211,30,0:57 chr1 70831841 . C T 23 . DP=22;VDB=0.0099;AF1=0.5;AC1=1;DP4=10,3,8,1;MQ=59;FQ=26;PV4=0.62,1.2e-11,1,1 GT:PL:GQ 0/1:53,0,234:56 chr1 70897652 . A T 41 . DP=25;VDB=0.0025;AF1=0.5;AC1=1;DP4=11,0,13,0;MQ=60;FQ=44;PV4=1,2.6e-13,1,0.45 GT:PL:GQ 0/1:71,0,160:74 chr1 70904523 . Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgt TTGTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgt,TTGTGTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgt,TTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 128 . INDEL;DP=45;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,15;MQ=52;FQ=-58.5 GT:PL:GQ 1/1:255,110,86,234,0,222,229,0,131,220:45 chr1 71331498 . A G 174 . DP=27;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,15;MQ=60;FQ=-105 GT:PL:GQ 1/1:207,78,0:99 chr1 71334870 . C T 118 . DP=29;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,2,16,4;MQ=60;FQ=120;PV4=1,2.7e-12,1,1 GT:PL:GQ 0/1:148,0,152:99 chr1 71419499 . C T 60 . DP=18;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,6,1,8;MQ=60;FQ=63;PV4=0.58,2.5e-09,1,1 GT:PL:GQ 0/1:90,0,185:93 chr1 71536574 . G C 164 . DP=32;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,4,10,12;MQ=60;FQ=143;PV4=0.7,1.2e-12,1,0.16 GT:PL:GQ 0/1:194,0,170:99 chr1 72058367 . C T 59 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:91,9,0:16 chr1 72058405 . T C 67 . DP=9;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:100,27,0:51 chr1 72058552 . G A 183 . DP=45;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,24,19;MQ=60;FQ=-156 GT:PL:GQ 1/1:216,129,0:99 chr1 72242039 . G A 103 . DP=4;VDB=0.0161;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:135,12,0:21 chr1 74575182 . C T 145 . DP=13;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,8,5;MQ=60;FQ=-66 GT:PL:GQ 1/1:178,39,0:75 chr1 74646514 . C T 83 . DP=34;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,2,30;MQ=60;FQ=-123 GT:PL:GQ 1/1:116,96,0:99 chr1 74648182 . A C 122 . DP=16;VDB=0.0019;AF1=0.5;AC1=1;DP4=6,0,9,0;MQ=58;FQ=91;PV4=1,0.36,0.22,0.49 GT:PL:GQ 0/1:152,0,118:99 chr1 74648329 . G A 152 . DP=97;VDB=0.0399;AF1=0.5;AC1=1;DP4=31,20,22,21;MQ=60;FQ=155;PV4=0.41,1.9e-30,1,1 GT:PL:GQ 0/1:182,0,255:99 chr1 74664149 . T C 202 . DP=48;VDB=0.0393;AF1=0.5;AC1=1;DP4=10,21,5,11;MQ=60;FQ=205;PV4=1,1,1,1 GT:PL:GQ 0/1:232,0,255:99 chr1 74665493 . G A 133 . DP=76;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,25,4,34;MQ=60;FQ=136;PV4=0.044,6.4e-24,1,0.2 GT:PL:GQ 0/1:163,0,255:99 chr1 74666507 . T C 38 . DP=14;VDB=0.0025;AF1=0.5;AC1=1;DP4=5,3,2,4;MQ=60;FQ=41;PV4=0.59,1.3e-05,1,1 GT:PL:GQ 0/1:68,0,187:71 chr1 74669973 . T G 37.8 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:69,6,0:10 chr1 74670172 . A G 90 . DP=56;VDB=0.0398;AF1=0.5;AC1=1;DP4=11,16,17,9;MQ=60;FQ=93;PV4=0.1,7.1e-27,1,1 GT:PL:GQ 0/1:120,0,255:99 chr1 74671519 . A G 37 . DP=16;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,7,0,8;MQ=58;FQ=40;PV4=1,5.4e-08,0.18,1 GT:PL:GQ 0/1:67,0,136:70 chr1 74705494 . G T 177 . DP=41;VDB=0.0066;AF1=0.5;AC1=1;DP4=25,1,12,2;MQ=60;FQ=180;PV4=0.28,0.24,1,1 GT:PL:GQ 0/1:207,0,224:99 chr1 74716515 . CTTTTTTTTTTTTTTTT CTTTTTTTTTTTTTTT 5.79 . INDEL;DP=51;VDB=0.0271;AF1=1;AC1=2;DP4=0,2,8,24;MQ=59;FQ=-102;PV4=1,1,0.4,0.22 GT:PL:GQ 1/1:45,67,0:54 chr1 74819077 . T G 225 . DP=69;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,23,17,22;MQ=60;FQ=225;PV4=0.07,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 74836154 . T G 59 . DP=49;VDB=0.0118;AF1=0.5;AC1=1;DP4=5,20,3,20;MQ=60;FQ=62;PV4=0.7,1.2e-20,1,0.064 GT:PL:GQ 0/1:89,0,255:92 chr1 74841173 . A C 143 . DP=8;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:176,24,0:45 chr1 74841190 . G C 37 . DP=13;VDB=0.0099;AF1=0.5;AC1=1;DP4=6,1,4,1;MQ=60;FQ=40;PV4=1,0.00074,1,0.39 GT:PL:GQ 0/1:67,0,154:70 chr1 74883759 . C G 88 . DP=9;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=72.9;PV4=1,0.4,1,1 GT:PL:GQ 0/1:118,0,100:99 chr1 74936374 . A G 221 . DP=54;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,36,16;MQ=60;FQ=-184 GT:PL:GQ 1/1:254,157,0:99 chr1 74936454 . G C 180 . DP=96;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,58,33;MQ=60;FQ=-282 GT:PL:GQ 1/1:213,255,0:99 chr1 74937749 . A G 222 . DP=154;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,79,70;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 74941210 . C T 222 . DP=129;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,72,52;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 74941293 . G A 222 . DP=196;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,107,79;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 75006027 . A G 97 . DP=81;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,32,10,26;MQ=59;FQ=100;PV4=1,1.6e-37,0.22,1 GT:PL:GQ 0/1:127,0,255:99 chr1 75006076 . G A 60 . DP=41;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,19,2,18;MQ=59;FQ=63;PV4=1,1.7e-25,0.16,0.11 GT:PL:GQ 0/1:90,0,216:93 chr1 75036783 . T C 218 . DP=60;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,46,14;MQ=60;FQ=-208 GT:PL:GQ 1/1:251,181,0:99 chr1 75036812 . C T 222 . DP=83;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,62,18;MQ=60;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr1 75072264 . G T 222 . DP=58;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,56,1;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 75097426 . G C 222 . DP=49;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,33,13;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 75108863 . A C 222 . DP=21;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,18;MQ=59;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 75190452 . C T 112 . DP=50;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,13,12,9;MQ=60;FQ=115;PV4=1,8.3e-13,1,1 GT:PL:GQ 0/1:142,0,255:99 chr1 75199152 . C T 106 . DP=22;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,20;MQ=60;FQ=-90 GT:PL:GQ 1/1:139,63,0:99 chr1 75214375 . CCAAACA CCA 180 . INDEL;DP=29;VDB=0.0216;AF1=0.5;AC1=1;DP4=17,2,8,0;MQ=60;FQ=183;PV4=1,2.5e-10,1,1 GT:PL:GQ 0/1:218,0,255:99 chr1 75603055 . A G 61 . DP=13;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:94,39,0:75 chr1 75622616 . C T 225 . DP=62;VDB=0.0345;AF1=0.5;AC1=1;DP4=26,16,11,9;MQ=60;FQ=225;PV4=0.78,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 75626420 . A T 107 . DP=55;VDB=0.0066;AF1=1;AC1=2;DP4=1,0,50,4;MQ=59;FQ=-163;PV4=1,3.8e-07,1,0.16 GT:PL:GQ 1/1:140,136,0:99 chr1 75672376 . A G 177 . DP=143;VDB=0.0384;AF1=0.5;AC1=1;DP4=20,47,19,53;MQ=59;FQ=180;PV4=0.71,3.6e-45,1,0.18 GT:PL:GQ 0/1:207,0,255:99 chr1 75680433 . G A 139 . DP=68;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,30,8,25;MQ=59;FQ=142;PV4=0.22,8.7e-30,0.49,1 GT:PL:GQ 0/1:169,0,255:99 chr1 75681351 . A T 29 . DP=3;VDB=0.0089;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:61,9,0:16 chr1 75681511 . T C 202 . DP=37;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,19,18;MQ=60;FQ=-138 GT:PL:GQ 1/1:235,111,0:99 chr1 75685403 . T C 225 . DP=100;VDB=0.0345;AF1=0.5;AC1=1;DP4=41,6,36,16;MQ=59;FQ=225;PV4=0.051,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 75685643 . T C 28 . DP=7;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=57;FQ=31;PV4=1,0.00024,0.22,0.11 GT:PL:GQ 0/1:58,0,82:61 chr1 75716925 . C T 222 . DP=37;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,19;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 75740845 . A G 3.01 . DP=4;VDB=0.0137;AF1=0.4998;AC1=1;DP4=0,2,0,2;MQ=60;FQ=4.77;PV4=1,0.02,1,1 GT:PL:GQ 0/1:30,0,56:28 chr1 75766186 . G A 18.1 . DP=4;VDB=0.0156;AF1=0.5004;AC1=1;DP4=1,0,3,0;MQ=60;FQ=3.52;PV4=1,0.023,1,1 GT:PL:GQ 0/1:48,0,28:31 chr1 76007232 . C T 11.3 . DP=13;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,8,0,4;MQ=60;FQ=14.2;PV4=1,0.00016,1,0.079 GT:PL:GQ 0/1:41,0,177:43 chr1 76143443 . A G 116 . DP=42;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,16,5,11;MQ=56;FQ=119;PV4=1,1.7e-05,1,0.32 GT:PL:GQ 0/1:146,0,255:99 chr1 76143458 . T C 164 . DP=41;VDB=0.0244;AF1=0.5;AC1=1;DP4=9,18,3,10;MQ=55;FQ=167;PV4=0.72,1,1,1 GT:PL:GQ 0/1:194,0,255:99 chr1 76143505 . T C 157 . DP=13;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,12;MQ=52;FQ=-63 GT:PL:GQ 1/1:190,36,0:69 chr1 76190569 . C G 28 . DP=16;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,9,0,7;MQ=60;FQ=31;PV4=1,4.9e-05,1,0.067 GT:PL:GQ 0/1:58,0,126:61 chr1 76194054 . C G 7.8 . DP=9;VDB=0.0051;AF1=0.5;AC1=1;DP4=7,0,2,0;MQ=60;FQ=10.4;PV4=1,0.11,1,0.29 GT:PL:GQ 0/1:37,0,146:39 chr1 76194229 . GTTTT GTTT 115 . INDEL;DP=33;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,1,31;MQ=60;FQ=-131 GT:PL:GQ 1/1:156,96,0:99 chr1 76194306 . A G 55.1 . DP=7;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:88,18,0:33 chr1 76198436 . T C 132 . DP=24;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,14,1,9;MQ=60;FQ=135;PV4=0.42,0.086,1,1 GT:PL:GQ 0/1:162,0,172:99 chr1 76198785 . G A 225 . DP=176;VDB=0.0380;AF1=0.5;AC1=1;DP4=29,52,45,50;MQ=60;FQ=225;PV4=0.13,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 76199345 . C G 225 . DP=94;VDB=0.0190;AF1=0.5;AC1=1;DP4=13,41,5,35;MQ=60;FQ=225;PV4=0.19,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 76205643 . C A 96 . DP=13;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,0,4,1;MQ=60;FQ=98.9;PV4=0.42,0.39,1,0.31 GT:PL:GQ 0/1:126,0,141:99 chr1 76227022 . A G 131 . DP=38;VDB=0.0393;AF1=0.5;AC1=1;DP4=3,12,5,17;MQ=59;FQ=134;PV4=1,8.3e-14,0.12,0.41 GT:PL:GQ 0/1:161,0,239:99 chr1 76234886 . A G 169 . DP=13;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,5,8;MQ=60;FQ=-66 GT:PL:GQ 1/1:202,39,0:75 chr1 76252011 . G A 105 . DP=31;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,7,6,6;MQ=60;FQ=108;PV4=0.71,3.1e-05,1,1 GT:PL:GQ 0/1:135,0,255:99 chr1 76252687 . T C 96 . DP=19;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,2,7,0;MQ=59;FQ=99;PV4=0.51,1,0.099,1 GT:PL:GQ 0/1:126,0,225:99 chr1 76255228 . G A 36 . DP=10;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,3,0,7;MQ=60;FQ=37.6;PV4=1,2.4e-05,1,0.012 GT:PL:GQ 0/1:66,0,70:68 chr1 76257892 . A T 200 . DP=52;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,36,10;MQ=59;FQ=-165 GT:PL:GQ 1/1:233,138,0:99 chr1 76269372 . T C 67 . DP=11;VDB=0.0216;AF1=0.5;AC1=1;DP4=5,0,4,0;MQ=60;FQ=70;PV4=1,0.37,1,0.33 GT:PL:GQ 0/1:97,0,119:99 chr1 76272837 . A G 134 . DP=47;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,15,7,18;MQ=60;FQ=137;PV4=1,8.6e-18,1,0.18 GT:PL:GQ 0/1:164,0,255:99 chr1 76276353 . T C 27.2 . DP=11;VDB=0.0190;AF1=0.5207;AC1=1;DP4=1,0,9,0;MQ=60;FQ=-16.1;PV4=1,6.4e-07,1,0.29 GT:PL:GQ 0/1:57,0,11:14 chr1 76333163 . T G 67 . DP=12;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,2,6,2;MQ=60;FQ=44;PV4=0.49,5.3e-05,1,1 GT:PL:GQ 0/1:97,0,71:74 chr1 76344011 . C A 121 . DP=26;VDB=0.0325;AF1=0.5;AC1=1;DP4=1,16,1,8;MQ=58;FQ=124;PV4=1,0.24,0.33,0.23 GT:PL:GQ 0/1:151,0,206:99 chr1 76344705 . T C 212 . DP=40;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,4,11,4;MQ=59;FQ=215;PV4=0.69,1,0.12,1 GT:PL:GQ 0/1:242,0,255:99 chr1 76344711 . A T 124 . DP=41;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,5,12,6;MQ=59;FQ=127;PV4=0.49,7.1e-11,0.13,1 GT:PL:GQ 0/1:154,0,255:99 chr1 76345640 . G T 15.1 . DP=11;VDB=0.0333;AF1=0.5;AC1=1;DP4=6,1,4,0;MQ=60;FQ=18.1;PV4=1,6.9e-06,1,1 GT:PL:GQ 0/1:45,0,163:48 chr1 76346920 . C CAT 214 . INDEL;DP=28;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,5;MQ=58;FQ=-119 GT:PL:GQ 1/1:255,84,0:99 chr1 76397972 . C T 89 . DP=38;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,13,1,20;MQ=60;FQ=92;PV4=0.3,5.5e-16,1,1 GT:PL:GQ 0/1:119,0,243:99 chr1 76608777 . C T 22.8 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:54,6,0:10 chr1 76771475 . G T 140 . DP=9;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:173,24,0:45 chr1 76771495 . G C 121 . DP=15;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,0,8,0;MQ=60;FQ=104;PV4=1,1,1,1 GT:PL:GQ 0/1:151,0,131:99 chr1 76773440 . T G 30 . DP=3;VDB=0.0156;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:62,9,0:16 chr1 77042405 . G A 35 . DP=33;VDB=0.0014;AF1=0.5;AC1=1;DP4=18,0,13,1;MQ=60;FQ=38;PV4=0.44,7e-21,1,0.46 GT:PL:GQ 0/1:65,0,183:68 chr1 77042631 . G C 225 . DP=76;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,36,6,26;MQ=60;FQ=225;PV4=0.75,0.043,1,0.055 GT:PL:GQ 0/1:255,0,255:99 chr1 77093180 . C A 222 . DP=47;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,27;MQ=59;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 77094641 . C G 39 . DP=8;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=42;PV4=1,0.41,1,1 GT:PL:GQ 0/1:69,0,92:72 chr1 77627096 . G A 110 . DP=22;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,10,11;MQ=60;FQ=-90 GT:PL:GQ 1/1:143,63,0:99 chr1 77634948 . G A 222 . DP=66;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,55,7;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 77759380 . C G 11.3 . DP=6;VDB=0.0070;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=14.2;PV4=1,0.0023,1,0.33 GT:PL:GQ 0/1:41,0,81:43 chr1 77759578 . A G 114 . DP=70;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,25,5,21;MQ=60;FQ=117;PV4=0.068,1.3e-16,1,1 GT:PL:GQ 0/1:144,0,255:99 chr1 77763542 . G A 134 . DP=16;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,4,10;MQ=60;FQ=-69 GT:PL:GQ 1/1:167,42,0:81 chr1 77949123 . G A 23 . DP=5;VDB=0.0271;AF1=0.5008;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-4.12;PV4=1,0.00022,1,0.34 GT:PL:GQ 0/1:53,0,25:28 chr1 77949129 . A T 3.55 . DP=5;VDB=0.0271;AF1=0.5006;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-4.74;PV4=1,0.00032,1,1 GT:PL:GQ 0/1:31,0,25:28 chr1 78024284 . T C 149 . DP=9;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-48 GT:PL:GQ 1/1:182,21,0:39 chr1 78024345 . CTATT CTATTATT 214 . INDEL;DP=15;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,10,5;MQ=58;FQ=-79.5 GT:PL:GQ 1/1:255,45,0:87 chr1 78031994 . A G 141 . DP=13;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:174,27,0:51 chr1 78033981 . aaaATGAAATGAA aAAATGAA 50.2 . INDEL;DP=2;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,1,1;MQ=47;FQ=-40.5 GT:PL:GQ 1/1:89,6,0:10 chr1 78045369 . G A 22.5 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:55,12,0:21 chr1 78281002 . T C 67 . DP=3;VDB=0.0183;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:99,9,0:16 chr1 78383467 . G A 160 . DP=12;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:193,33,0:63 chr1 78392446 . G A 153 . DP=49;VDB=0.0373;AF1=0.5;AC1=1;DP4=18,4,16,9;MQ=60;FQ=156;PV4=0.21,1e-09,1,0.1 GT:PL:GQ 0/1:183,0,255:99 chr1 78399207 . C G 50.5 . DP=5;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:83,12,0:21 chr1 78430689 . AG AGG 214 . INDEL;DP=61;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,41,20;MQ=60;FQ=-219 GT:PL:GQ 1/1:255,184,0:99 chr1 78478675 . G A 86 . DP=24;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,22,2;MQ=59;FQ=-99 GT:PL:GQ 1/1:119,72,0:99 chr1 78481640 . G A 166 . DP=12;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:199,36,0:69 chr1 78560583 . G A 102 . DP=6;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:135,15,0:27 chr1 78578177 . T C 142 . DP=70;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,25,8,27;MQ=60;FQ=145;PV4=1,8.9e-24,1,0.16 GT:PL:GQ 0/1:172,0,255:99 chr1 78585086 . T C 158 . DP=101;VDB=0.0399;AF1=0.5;AC1=1;DP4=40,13,32,14;MQ=60;FQ=161;PV4=0.65,4.1e-44,1,1 GT:PL:GQ 0/1:188,0,255:99 chr1 78958491 . C T 48 . DP=76;VDB=0.0271;AF1=0.5;AC1=1;DP4=32,17,17,8;MQ=60;FQ=51;PV4=1,7.2e-24,1,1 GT:PL:GQ 0/1:78,0,255:81 chr1 79094593 . A G 170 . DP=36;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,19;MQ=59;FQ=-129 GT:PL:GQ 1/1:203,102,0:99 chr1 79106967 . C T 40 . DP=9;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:73,27,0:51 chr1 79355596 . A G 134 . DP=16;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,11;MQ=60;FQ=-75 GT:PL:GQ 1/1:167,48,0:93 chr1 79357360 . G C 104 . DP=65;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,21,11,23;MQ=60;FQ=107;PV4=1,4.4e-28,0.18,0.47 GT:PL:GQ 0/1:134,0,255:99 chr1 79383458 . A T 73 . DP=45;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,1,18,3;MQ=60;FQ=76;PV4=0.33,1.5e-25,1,0.36 GT:PL:GQ 0/1:103,0,218:99 chr1 79387242 . C T 46 . DP=12;VDB=0.0180;AF1=0.5;AC1=1;DP4=6,1,4,0;MQ=60;FQ=49;PV4=1,0.059,1,1 GT:PL:GQ 0/1:76,0,165:79 chr1 79401927 . A G 47 . DP=19;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,0,10,1;MQ=59;FQ=50;PV4=1,7.1e-14,0.2,1 GT:PL:GQ 0/1:77,0,141:80 chr1 79411888 . T C 63 . DP=11;VDB=0.0059;AF1=0.5;AC1=1;DP4=7,0,4,0;MQ=60;FQ=66;PV4=1,1,1,1 GT:PL:GQ 0/1:93,0,139:96 chr1 79472141 . C A 88 . DP=15;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,13,1;MQ=58;FQ=-69 GT:PL:GQ 1/1:121,42,0:81 chr1 82302600 . T C 63 . DP=13;VDB=0.0393;AF1=0.5;AC1=1;DP4=3,2,5,3;MQ=58;FQ=66;PV4=1,5.6e-08,0.23,0.096 GT:PL:GQ 0/1:93,0,138:96 chr1 82415814 . T C 222 . DP=21;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,18,3;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 82416220 . G A 61 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:93,9,0:16 chr1 82421596 . C T 211 . DP=138;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,84,46;MQ=60;FQ=-282 GT:PL:GQ 1/1:244,255,0:99 chr1 82437670 . ATTTGTTTT ATTT 108 . INDEL;DP=19;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,9,1,7;MQ=50;FQ=111;PV4=0.47,0.085,0.0025,0.35 GT:PL:GQ 0/1:146,0,239:99 chr1 82450194 . C A 13.2 . DP=13;VDB=0.0164;AF1=0.5;AC1=1;DP4=8,0,3,1;MQ=60;FQ=16.1;PV4=0.33,6.7e-05,1,0.051 GT:PL:GQ 0/1:43,0,151:46 chr1 82450758 . C T 3.54 . DP=5;VDB=0.0080;AF1=0.4998;AC1=1;DP4=2,0,3,0;MQ=60;FQ=5.46;PV4=1,0.00013,1,0.35 GT:PL:GQ 0/1:31,0,61:30 chr1 82450844 . C G 79 . DP=26;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,3,7,3;MQ=60;FQ=82;PV4=0.64,5.8e-14,1,0.068 GT:PL:GQ 0/1:109,0,255:99 chr1 82453022 . A G 63 . DP=13;VDB=0.0140;AF1=0.5;AC1=1;DP4=4,0,9,0;MQ=60;FQ=61.3;PV4=1,1e-05,1,1 GT:PL:GQ 0/1:93,0,90:91 chr1 84355734 . AAGAACTTCAAGGATA AA 202 . INDEL;DP=57;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,23,5,17;MQ=50;FQ=205;PV4=1,0.36,4.2e-13,1 GT:PL:GQ 0/1:240,0,255:99 chr1 84365788 . C A 15.1 . DP=24;VDB=0.0164;AF1=0.5;AC1=1;DP4=10,3,10,1;MQ=60;FQ=18.1;PV4=0.6,5e-18,1,1 GT:PL:GQ 0/1:45,0,239:48 chr1 84394792 . G A 85 . DP=25;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,2,7,0;MQ=58;FQ=88;PV4=1,1,0.26,1 GT:PL:GQ 0/1:115,0,236:99 chr1 84640691 . T G 129 . DP=15;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,7;MQ=60;FQ=-69 GT:PL:GQ 1/1:162,42,0:81 chr1 84644917 . C G 43.8 . DP=2;VDB=0.0124;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:75,6,0:10 chr1 84765358 . attt at 68 . INDEL;DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,4;MQ=54;FQ=-46.5 GT:PL:GQ 1/1:108,12,0:21 chr1 84791239 . T C 20.6 . DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:53,12,0:21 chr1 84810396 . A C 63.1 . DP=9;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,6,1;MQ=53;FQ=-48 GT:PL:GQ 1/1:96,21,0:39 chr1 84810815 . A G 222 . DP=164;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,86,67;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 84853957 . A T 96 . DP=46;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,38,3;MQ=60;FQ=-150 GT:PL:GQ 1/1:129,123,0:99 chr1 84876711 . C CA 215 . INDEL;DP=63;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,27,3,20;MQ=59;FQ=216;PV4=0.33,1,0.16,0.14 GT:PL:GQ 0/1:253,0,255:99 chr1 84876731 . T G 55 . DP=42;VDB=0.0140;AF1=0.5;AC1=1;DP4=3,25,1,12;MQ=59;FQ=58;PV4=1,1.4e-08,1,0.27 GT:PL:GQ 0/1:85,0,252:88 chr1 84878228 . C T 211 . DP=27;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,9,2,15;MQ=59;FQ=146;PV4=1,1,0.23,1 GT:PL:GQ 0/1:241,0,173:99 chr1 84944989 . A G 77 . DP=19;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,5,5,3;MQ=59;FQ=80;PV4=0.66,1.5e-05,0.14,1 GT:PL:GQ 0/1:107,0,222:99 chr1 84946745 . C T 39.3 . DP=5;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:72,15,0:27 chr1 84963000 . A G 183 . DP=18;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,0,11,2;MQ=60;FQ=60;PV4=1,0.27,1,0.2 GT:PL:GQ 0/1:213,0,87:90 chr1 84991488 . T G 62 . DP=26;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,3,9,4;MQ=60;FQ=65;PV4=1,1.8e-14,1,1 GT:PL:GQ 0/1:92,0,231:95 chr1 85009894 . A G 94 . DP=144;VDB=0.0345;AF1=0.5;AC1=1;DP4=42,37,41,19;MQ=60;FQ=97;PV4=0.082,5.4e-70,1,1 GT:PL:GQ 0/1:124,0,255:99 chr1 85016177 . A G 85 . DP=15;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,1,3,7;MQ=60;FQ=65;PV4=0.24,4e-06,1,1 GT:PL:GQ 0/1:115,0,92:95 chr1 85020695 . A G 135 . DP=104;VDB=0.0392;AF1=0.5;AC1=1;DP4=43,15,35,8;MQ=60;FQ=138;PV4=0.48,2.1e-37,1,1 GT:PL:GQ 0/1:165,0,255:99 chr1 85031630 . G A 169 . DP=50;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,14,10,19;MQ=60;FQ=172;PV4=0.52,3.4e-08,1,1 GT:PL:GQ 0/1:199,0,224:99 chr1 85036239 . C G 131 . DP=68;VDB=0.0345;AF1=0.5;AC1=1;DP4=28,10,21,8;MQ=59;FQ=134;PV4=1,2e-24,0.42,0.24 GT:PL:GQ 0/1:161,0,255:99 chr1 85039828 . G A 161 . DP=53;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,11,12,14;MQ=59;FQ=164;PV4=0.58,5.9e-16,0.29,1 GT:PL:GQ 0/1:191,0,255:99 chr1 85039955 . G A 142 . DP=29;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,6,7,10;MQ=58;FQ=144;PV4=0.72,0.012,0.12,0.43 GT:PL:GQ 0/1:172,0,180:99 chr1 85096592 . C T 9.52 . DP=24;VDB=0.0197;AF1=0.5;AC1=1;DP4=8,11,2,3;MQ=60;FQ=12.3;PV4=1,1.4e-09,1,0.35 GT:PL:GQ 0/1:39,0,255:41 chr1 85096920 . A G 48 . DP=49;VDB=0.0190;AF1=0.5;AC1=1;DP4=20,5,17,5;MQ=60;FQ=51;PV4=1,8.3e-24,1,1 GT:PL:GQ 0/1:78,0,255:81 chr1 85097247 . T G 107 . DP=44;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,2,21,3;MQ=59;FQ=110;PV4=1,1.1e-20,0.1,0.39 GT:PL:GQ 0/1:137,0,233:99 chr1 85113203 . T C 222 . DP=115;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,54,59;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 85113229 . A G 225 . DP=104;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,35,20,29;MQ=59;FQ=225;PV4=0.42,0.34,0.26,0.26 GT:PL:GQ 0/1:255,0,255:99 chr1 85121255 . A G 159 . DP=51;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,13,9,17;MQ=60;FQ=162;PV4=0.56,9.5e-17,1,1 GT:PL:GQ 0/1:189,0,255:99 chr1 85128262 . A G 225 . DP=51;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,21,4,19;MQ=60;FQ=225;PV4=0.73,1,1,0.4 GT:PL:GQ 0/1:255,0,255:99 chr1 85128280 . T C 165 . DP=38;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,4,30;MQ=60;FQ=-129 GT:PL:GQ 1/1:198,102,0:99 chr1 85128305 . G C 83 . DP=19;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,12,0,7;MQ=60;FQ=86;PV4=1,0.16,1,1 GT:PL:GQ 0/1:113,0,165:99 chr1 85131982 . T G 155 . DP=10;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:188,30,0:57 chr1 85331808 . GAGAAG GAGAAGAAG 217 . INDEL;DP=49;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,20,5,19;MQ=56;FQ=217;PV4=0.42,1,0.0026,1 GT:PL:GQ 0/1:255,0,255:99 chr1 85392324 . C T 160 . DP=40;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,12,12,13;MQ=59;FQ=163;PV4=0.044,3.8e-20,1,0.37 GT:PL:GQ 0/1:190,0,202:99 chr1 85418307 . C G 28 . DP=29;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,14,0,13;MQ=60;FQ=31;PV4=1,4.4e-15,1,1 GT:PL:GQ 0/1:58,0,203:61 chr1 85422061 . C T 79 . DP=118;VDB=0.0244;AF1=0.5;AC1=1;DP4=48,18,33,17;MQ=60;FQ=82;PV4=0.54,4.3e-57,0.13,0.47 GT:PL:GQ 0/1:109,0,255:99 chr1 85462582 . C G 65 . DP=20;VDB=0.0359;AF1=0.5;AC1=1;DP4=1,8,2,7;MQ=60;FQ=68;PV4=1,7.4e-07,1,1 GT:PL:GQ 0/1:95,0,161:98 chr1 85462652 . G T 35 . DP=3;VDB=0.0194;AF1=0.504;AC1=1;DP4=1,0,0,2;MQ=60;FQ=-9.5;PV4=0.33,1,1,1 GT:PL:GQ 0/1:65,0,18:21 chr1 85488030 . G A 150 . DP=91;VDB=0.0399;AF1=0.5;AC1=1;DP4=20,28,14,27;MQ=60;FQ=153;PV4=0.52,5.1e-35,1,0.43 GT:PL:GQ 0/1:180,0,255:99 chr1 85488154 . G C 149 . DP=10;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:182,30,0:57 chr1 85537522 . T C 74.5 . DP=4;VDB=0.0199;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:107,12,0:21 chr1 85547945 . T C 91 . DP=20;VDB=0.0099;AF1=0.5;AC1=1;DP4=6,1,10,2;MQ=60;FQ=94;PV4=1,3.4e-07,1,1 GT:PL:GQ 0/1:121,0,143:99 chr1 85559452 . A G 225 . DP=108;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,33,18,39;MQ=60;FQ=225;PV4=1,1,0.18,0.047 GT:PL:GQ 0/1:255,0,255:99 chr1 85560313 . T C 34 . DP=8;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=60;FQ=35.3;PV4=1,0.006,1,1 GT:PL:GQ 0/1:64,0,67:65 chr1 85561546 . T C 207 . DP=41;VDB=0.0216;AF1=0.5;AC1=1;DP4=16,2,18,2;MQ=59;FQ=205;PV4=1,0.078,1,0.036 GT:PL:GQ 0/1:237,0,234:99 chr1 85564138 . A G 12.3 . DP=12;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,0,5,0;MQ=60;FQ=15.1;PV4=1,1.5e-07,1,0.32 GT:PL:GQ 0/1:42,0,140:44 chr1 85574021 . G A 4.13 . DP=4;VDB=0.0190;AF1=0.4998;AC1=1;DP4=0,2,0,2;MQ=60;FQ=6.18;PV4=1,0.0034,1,0.14 GT:PL:GQ 0/1:32,0,54:31 chr1 85589939 . GTT GT 214 . INDEL;DP=95;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,33,53;MQ=59;FQ=-268;PV4=1,0.13,1,0.49 GT:PL:GQ 1/1:255,233,0:99 chr1 85592126 . G T 177 . DP=9;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:210,27,0:51 chr1 85595645 . C T 196 . DP=71;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,29,37;MQ=60;FQ=-226 GT:PL:GQ 1/1:229,199,0:99 chr1 85598527 . TCCCCCCCC TCCCCCCC 8.17 . INDEL;DP=34;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,32,2;MQ=60;FQ=-137 GT:PL:GQ 1/1:48,102,0:63 chr1 85624549 . C T 221 . DP=57;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,45,12;MQ=60;FQ=-199 GT:PL:GQ 1/1:254,172,0:99 chr1 85624864 . G A 205 . DP=88;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,58;MQ=60;FQ=-280 GT:PL:GQ 1/1:238,253,0:99 chr1 85647713 . T C 6.95 . DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:38,9,0:10 chr1 85648620 . C T 196 . DP=43;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,19,20;MQ=59;FQ=-144 GT:PL:GQ 1/1:229,117,0:99 chr1 85648905 . T C 184 . DP=24;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,9,2,11;MQ=60;FQ=165;PV4=1,1,1,1 GT:PL:GQ 0/1:214,0,192:99 chr1 85666327 . T C 70 . DP=12;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,3,3,4;MQ=60;FQ=70.9;PV4=1,0.049,1,0.14 GT:PL:GQ 0/1:100,0,102:99 chr1 85741921 . G C 222 . DP=35;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,20,14;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 85787114 . A T 116 . DP=14;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,11,2;MQ=60;FQ=-66 GT:PL:GQ 1/1:149,39,0:75 chr1 85787334 . C T 86 . DP=12;VDB=0.0008;AF1=0.5;AC1=1;DP4=1,6,1,4;MQ=60;FQ=89;PV4=1,0.28,1,0.2 GT:PL:GQ 0/1:116,0,156:99 chr1 85790633 . G A 34 . DP=12;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,6,0,6;MQ=60;FQ=37;PV4=1,1.9e-06,1,1 GT:PL:GQ 0/1:64,0,118:67 chr1 85816134 . T C 136 . DP=42;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,4,14,6;MQ=60;FQ=139;PV4=0.72,5e-17,1,0.17 GT:PL:GQ 0/1:166,0,255:99 chr1 85817295 . G A 150 . DP=92;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,34,11,39;MQ=60;FQ=153;PV4=0.61,1.9e-41,1,1 GT:PL:GQ 0/1:180,0,255:99 chr1 85870024 . C T 169 . DP=165;VDB=0.0365;AF1=0.5;AC1=1;DP4=47,32,49,31;MQ=60;FQ=172;PV4=0.87,2.1e-54,1,0.45 GT:PL:GQ 0/1:199,0,255:99 chr1 86046561 . C A 9.31 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr1 86046924 . G A 53.1 . DP=10;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:86,21,0:39 chr1 86167957 . C T 69 . DP=17;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,7,2,6;MQ=60;FQ=72;PV4=1,2.3e-09,1,0.21 GT:PL:GQ 0/1:99,0,174:99 chr1 86202016 . C T 225 . DP=106;VDB=0.0399;AF1=0.5;AC1=1;DP4=27,22,33,23;MQ=60;FQ=225;PV4=0.7,0.16,0.18,1 GT:PL:GQ 0/1:255,0,255:99 chr1 86210241 . GTTTT GTTTTT 20.5 . INDEL;DP=7;VDB=0.0002;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=9.79;PV4=1,1,1,0.34 GT:PL:GQ 0/1:58,0,44:47 chr1 86210546 . G A 39 . DP=23;VDB=0.0099;AF1=0.5;AC1=1;DP4=2,14,1,6;MQ=60;FQ=42;PV4=1,3.3e-11,1,0.14 GT:PL:GQ 0/1:69,0,242:72 chr1 86211325 . G A 22 . DP=10;VDB=0.0059;AF1=0.5;AC1=1;DP4=0,6,0,4;MQ=60;FQ=25;PV4=1,1.7e-05,1,0.23 GT:PL:GQ 0/1:52,0,129:55 chr1 86246849 . A C 48 . DP=11;VDB=0.0053;AF1=0.5001;AC1=1;DP4=2,0,8,1;MQ=60;FQ=6.98;PV4=1,0.00015,1,1 GT:PL:GQ 0/1:78,0,33:36 chr1 86249063 . C T 58 . DP=18;VDB=0.0099;AF1=0.5;AC1=1;DP4=7,0,11,0;MQ=60;FQ=61;PV4=1,3.2e-07,1,1 GT:PL:GQ 0/1:88,0,120:91 chr1 86249911 . A G 128 . DP=87;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,31,11,34;MQ=59;FQ=131;PV4=1,1.2e-42,1,1 GT:PL:GQ 0/1:158,0,255:99 chr1 86252025 . A G 18.1 . DP=20;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,5,8,0;MQ=60;FQ=21;PV4=0.045,5.7e-09,1,0.44 GT:PL:GQ 0/1:48,0,241:51 chr1 86340880 . A G 225 . DP=52;VDB=0.0244;AF1=0.5;AC1=1;DP4=24,4,15,7;MQ=60;FQ=225;PV4=0.18,0.32,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 86341153 . G A 52 . DP=6;VDB=0.0053;AF1=0.5032;AC1=1;DP4=0,1,1,4;MQ=60;FQ=-8.63;PV4=1,0.0051,1,1 GT:PL:GQ 0/1:82,0,19:22 chr1 86361802 . C G 194 . DP=14;VDB=0.0099;AF1=0.5001;AC1=1;DP4=0,2,3,9;MQ=60;FQ=6.99;PV4=1,0.24,1,0.13 GT:PL:GQ 0/1:224,0,33:36 chr1 86375654 . C G 125 . DP=75;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,16,20,16;MQ=60;FQ=128;PV4=1,8.5e-26,1,1 GT:PL:GQ 0/1:155,0,255:99 chr1 86453237 . T G 166 . DP=17;VDB=0.0343;AF1=0.5;AC1=1;DP4=3,3,6,3;MQ=60;FQ=117;PV4=0.62,0.32,1,1 GT:PL:GQ 0/1:196,0,144:99 chr1 86482922 . A T 78 . DP=26;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,8,6,10;MQ=60;FQ=81;PV4=0.42,9e-09,1,1 GT:PL:GQ 0/1:108,0,184:99 chr1 86487981 . G A 109 . DP=51;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,44;MQ=53;FQ=-171 GT:PL:GQ 1/1:142,144,0:99 chr1 86487992 . AACAGA AACAGACAGA 214 . INDEL;DP=46;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,4,29;MQ=53;FQ=-134 GT:PL:GQ 1/1:255,99,0:99 chr1 86488232 . G A 31 . DP=26;VDB=0.0140;AF1=0.5;AC1=1;DP4=10,4,10,1;MQ=60;FQ=34;PV4=0.34,2.6e-14,1,0.4 GT:PL:GQ 0/1:61,0,255:64 chr1 86512433 . C T 132 . DP=18;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,1,7,1;MQ=60;FQ=135;PV4=1,1,1,1 GT:PL:GQ 0/1:162,0,183:99 chr1 86524903 . C T 154 . DP=17;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,6,2,7;MQ=60;FQ=146;PV4=1,1,1,1 GT:PL:GQ 0/1:184,0,173:99 chr1 86557967 . G A 65.3 . DP=5;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:98,15,0:27 chr1 86590915 . G A 222 . DP=114;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,72,36;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 86591837 . G A 222 . DP=68;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,21,45;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr1 86621992 . C A 76 . DP=17;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,12,2;MQ=58;FQ=-69 GT:PL:GQ 1/1:109,42,0:81 chr1 86818572 . T C 219 . DP=39;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,19;MQ=60;FQ=-144 GT:PL:GQ 1/1:252,117,0:99 chr1 86820267 . C T 222 . DP=79;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,36,38;MQ=60;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr1 86822231 . A G 16.1 . DP=35;VDB=0.0343;AF1=0.5;AC1=1;DP4=7,18,4,5;MQ=60;FQ=19.1;PV4=0.43,2.4e-16,1,0.27 GT:PL:GQ 0/1:46,0,255:49 chr1 86838158 . C T 77.3 . DP=5;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,3,2;MQ=60;FQ=-42 GT:PL:GQ 1/1:110,15,0:27 chr1 86852621 . A G 205 . DP=26;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,3,11,3;MQ=60;FQ=189;PV4=1,0.39,1,0.3 GT:PL:GQ 0/1:235,0,216:99 chr1 86891005 . C A 53 . DP=10;VDB=0.0318;AF1=0.5;AC1=1;DP4=4,2,4,0;MQ=60;FQ=56;PV4=0.47,0.26,1,1 GT:PL:GQ 0/1:83,0,157:86 chr1 86891179 . T C 92 . DP=19;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,4,7,3;MQ=60;FQ=95;PV4=0.65,2.4e-05,1,0.16 GT:PL:GQ 0/1:122,0,189:99 chr1 86896541 . G A 225 . DP=80;VDB=0.0380;AF1=0.5;AC1=1;DP4=23,15,24,17;MQ=60;FQ=225;PV4=1,1,1,0.28 GT:PL:GQ 0/1:255,0,255:99 chr1 86898315 . T C 34 . DP=21;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,11,1,8;MQ=60;FQ=37;PV4=0.45,1.6e-09,1,1 GT:PL:GQ 0/1:64,0,154:67 chr1 86913265 . C T 225 . DP=76;VDB=0.0393;AF1=0.5;AC1=1;DP4=16,27,12,17;MQ=59;FQ=225;PV4=0.81,0.098,1,0.11 GT:PL:GQ 0/1:255,0,255:99 chr1 86920904 . A G 127 . DP=106;VDB=0.0345;AF1=0.5;AC1=1;DP4=43,9,38,13;MQ=60;FQ=130;PV4=0.34,3.1e-33,1,0.015 GT:PL:GQ 0/1:157,0,255:99 chr1 86939130 . C T 167 . DP=19;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,8,11;MQ=60;FQ=-84 GT:PL:GQ 1/1:200,57,0:99 chr1 86939390 . G A 106 . DP=33;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,28,5;MQ=60;FQ=-126 GT:PL:GQ 1/1:139,99,0:99 chr1 86947975 . A T 99 . DP=86;VDB=0.0345;AF1=0.5;AC1=1;DP4=27,25,23,11;MQ=60;FQ=102;PV4=0.18,1.4e-35,1,0.48 GT:PL:GQ 0/1:129,0,255:99 chr1 86952324 . A G 161 . DP=40;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,24,11;MQ=59;FQ=-132 GT:PL:GQ 1/1:194,105,0:99 chr1 86954700 . A G 173 . DP=89;VDB=0.0399;AF1=0.5;AC1=1;DP4=25,23,17,23;MQ=60;FQ=176;PV4=0.4,3.2e-18,1,0.34 GT:PL:GQ 0/1:203,0,255:99 chr1 86956785 . C G 116 . DP=8;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:149,21,0:39 chr1 86959173 . T C 222 . DP=62;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,44,16;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 86959796 . C T 114 . DP=42;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,36,2;MQ=59;FQ=-141 GT:PL:GQ 1/1:147,114,0:99 chr1 86965419 . T C 195 . DP=48;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,38,10;MQ=59;FQ=-171 GT:PL:GQ 1/1:228,144,0:99 chr1 87036746 . C A 222 . DP=59;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,43,15;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 87045896 . tcctacacctac tcctac 214 . INDEL;DP=125;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,38,27;MQ=32;FQ=-231 GT:PL:GQ 1/1:255,196,0:99 chr1 87101245 . A G 111 . DP=19;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,3,6,1;MQ=60;FQ=114;PV4=1,0.31,1,1 GT:PL:GQ 0/1:141,0,239:99 chr1 87101375 . C G 225 . DP=46;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,15,8,14;MQ=60;FQ=225;PV4=1,0.049,1,0.46 GT:PL:GQ 0/1:255,0,255:99 chr1 87102593 . T C 225 . DP=78;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,20,19,30;MQ=60;FQ=225;PV4=0.32,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 87368917 . A G 67 . DP=10;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,1,4,0;MQ=60;FQ=70;PV4=1,1,1,1 GT:PL:GQ 0/1:97,0,126:99 chr1 87369176 . C T 78 . DP=20;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,8,1,10;MQ=59;FQ=81;PV4=1,9.5e-10,0.2,0.37 GT:PL:GQ 0/1:108,0,138:99 chr1 87458695 . G A 29 . DP=15;VDB=0.0305;AF1=0.5;AC1=1;DP4=6,1,5,1;MQ=60;FQ=32;PV4=1,3.5e-06,1,0.11 GT:PL:GQ 0/1:59,0,140:62 chr1 87458742 . A G 38 . DP=25;VDB=0.0216;AF1=0.5;AC1=1;DP4=5,7,9,2;MQ=59;FQ=41;PV4=0.089,1.8e-12,0.15,1 GT:PL:GQ 0/1:68,0,243:71 chr1 87538182 . TTGTGTGT TTGTGT 217 . INDEL;DP=26;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,6,10,3;MQ=59;FQ=217;PV4=0.23,5.1e-06,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr1 87538200 . G A 137 . DP=29;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,6,12,5;MQ=57;FQ=140;PV4=0.22,1.1e-11,0.086,1 GT:PL:GQ 0/1:167,0,212:99 chr1 87549858 . A G 71 . DP=9;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:104,24,0:45 chr1 87563668 . G A 222 . DP=16;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,13;MQ=58;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr1 87570398 . G A 122 . DP=82;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,35,5,29;MQ=59;FQ=125;PV4=0.56,4.9e-32,0.2,1 GT:PL:GQ 0/1:152,0,255:99 chr1 87598117 . T G 135 . DP=13;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,1,4,3;MQ=60;FQ=78;PV4=0.56,1,1,1 GT:PL:GQ 0/1:165,0,105:99 chr1 87599697 . G A 225 . DP=54;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,22,6,17;MQ=60;FQ=225;PV4=1,0.11,1,0.33 GT:PL:GQ 0/1:255,0,255:99 chr1 87633761 . C T 103 . DP=11;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,1,3,2;MQ=60;FQ=103;PV4=0.55,1,1,1 GT:PL:GQ 0/1:133,0,133:99 chr1 89225976 . T C 19.1 . DP=19;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,4,6,2;MQ=59;FQ=22;PV4=1,4.6e-09,0.13,1 GT:PL:GQ 0/1:49,0,220:52 chr1 89271574 . T C 225 . DP=70;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,10,19,11;MQ=60;FQ=225;PV4=0.6,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 89280965 . A G 25 . DP=14;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,1,5,0;MQ=60;FQ=28;PV4=1,0.0016,1,0.32 GT:PL:GQ 0/1:55,0,171:58 chr1 89322982 . G A 222 . DP=75;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,46,27;MQ=59;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr1 89426902 . G A 225 . DP=116;VDB=0.0322;AF1=0.5;AC1=1;DP4=40,21,36,15;MQ=60;FQ=225;PV4=0.69,0.0022,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 89430420 . A G 31 . DP=16;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,1,6,2;MQ=58;FQ=34;PV4=1,1.9e-08,1,0.41 GT:PL:GQ 0/1:61,0,97:64 chr1 89454063 . G C 28 . DP=19;VDB=0.0384;AF1=0.5;AC1=1;DP4=5,7,1,5;MQ=60;FQ=31;PV4=0.6,3.3e-10,1,1 GT:PL:GQ 0/1:58,0,255:61 chr1 89475230 . T G 99 . DP=65;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,26,6,23;MQ=59;FQ=102;PV4=1,2.3e-25,0.015,1 GT:PL:GQ 0/1:129,0,255:99 chr1 89477830 . T C 9.52 . DP=4;VDB=0.0176;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=11.9;PV4=1,0.27,1,1 GT:PL:GQ 0/1:39,0,49:41 chr1 89479063 . G A 164 . DP=61;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,18,14,15;MQ=60;FQ=167;PV4=0.8,5.7e-24,1,1 GT:PL:GQ 0/1:194,0,255:99 chr1 89479074 . C T 168 . DP=53;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,15,11,16;MQ=60;FQ=171;PV4=1,6.4e-22,1,0.15 GT:PL:GQ 0/1:198,0,255:99 chr1 89479758 . T C 137 . DP=137;VDB=0.0345;AF1=0.5;AC1=1;DP4=46,30,34,24;MQ=60;FQ=140;PV4=0.86,6.4e-41,1,1 GT:PL:GQ 0/1:167,0,255:99 chr1 89486037 . C T 40 . DP=19;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,0,9,2;MQ=60;FQ=43;PV4=0.49,4.5e-11,1,1 GT:PL:GQ 0/1:70,0,144:73 chr1 89520329 . GAAAAACA GA 117 . INDEL;DP=40;VDB=0.0081;AF1=0.5;AC1=1;DP4=14,7,11,5;MQ=48;FQ=120;PV4=1,3.9e-06,1.6e-23,1 GT:PL:GQ 0/1:155,0,255:99 chr1 89520574 . C A 222 . DP=73;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,58;MQ=58;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr1 89520636 . G A 137 . DP=20;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,14;MQ=58;FQ=-72 GT:PL:GQ 1/1:170,45,0:87 chr1 89520643 . C T 113 . DP=15;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,2,9;MQ=57;FQ=-60 GT:PL:GQ 1/1:146,33,0:63 chr1 89521841 . G C 107 . DP=79;VDB=0.0140;AF1=0.5;AC1=1;DP4=5,33,5,34;MQ=42;FQ=110;PV4=1,2.8e-27,0.32,1 GT:PL:GQ 0/1:137,0,255:99 chr1 89522512 . C T 136 . DP=75;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,12,30,6;MQ=60;FQ=139;PV4=0.18,1.5e-24,1,1 GT:PL:GQ 0/1:166,0,255:99 chr1 89522646 . G C 142 . DP=32;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,5,27;MQ=60;FQ=-123 GT:PL:GQ 1/1:175,96,0:99 chr1 89523927 . C T 26 . DP=20;VDB=0.0189;AF1=0.5;AC1=1;DP4=2,15,1,2;MQ=59;FQ=29;PV4=0.4,1,1,1 GT:PL:GQ 0/1:56,0,239:59 chr1 89574026 . G A 59 . DP=27;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,7,1,17;MQ=60;FQ=62;PV4=0.25,1.2e-09,1,1 GT:PL:GQ 0/1:89,0,155:92 chr1 89579827 . C T 84 . DP=20;VDB=0.0004;AF1=0.5;AC1=1;DP4=2,7,2,8;MQ=58;FQ=87;PV4=1,1.6e-06,1,1 GT:PL:GQ 0/1:114,0,178:99 chr1 89579941 . T C 162 . DP=74;VDB=0.0398;AF1=0.5;AC1=1;DP4=24,20,16,13;MQ=59;FQ=165;PV4=1,1.3e-23,1,0.03 GT:PL:GQ 0/1:192,0,255:99 chr1 89582690 . G C 90 . DP=50;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,10,13,4;MQ=60;FQ=93;PV4=0.74,1.4e-17,1,0.46 GT:PL:GQ 0/1:120,0,255:99 chr1 89582702 . A G 80 . DP=58;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,4,27,11;MQ=60;FQ=83;PV4=0.75,1.5e-29,1,0.34 GT:PL:GQ 0/1:110,0,231:99 chr1 89607479 . G T 127 . DP=26;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,13,0,11;MQ=60;FQ=130;PV4=0.49,1,1,1 GT:PL:GQ 0/1:157,0,229:99 chr1 89607486 . T C 130 . DP=22;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,10,0,10;MQ=60;FQ=133;PV4=1,1,1,1 GT:PL:GQ 0/1:160,0,190:99 chr1 89615979 . C T 22 . DP=15;VDB=0.0011;AF1=0.5;AC1=1;DP4=7,0,3,2;MQ=60;FQ=25;PV4=0.15,3.5e-06,1,1 GT:PL:GQ 0/1:52,0,134:55 chr1 89637578 . G A 152 . DP=68;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,24,12,18;MQ=60;FQ=155;PV4=0.8,3.7e-25,1,0.035 GT:PL:GQ 0/1:182,0,255:99 chr1 89650850 . A T 5.47 . DP=3;VDB=0.0169;AF1=0.5012;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-5.68;PV4=1,0.094,1,0.46 GT:PL:GQ 0/1:34,0,23:28 chr1 89652078 . A T 87 . DP=56;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,21,8,9;MQ=53;FQ=90;PV4=1,5.1e-15,5.4e-30,1 GT:PL:GQ 0/1:117,0,255:99 chr1 89652094 . G A 36 . DP=51;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,21,5,8;MQ=53;FQ=39;PV4=1,1.5e-12,5.7e-24,1 GT:PL:GQ 0/1:66,0,255:69 chr1 89652097 . C T 75 . DP=48;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,19,5,11;MQ=51;FQ=78;PV4=0.75,1.1e-12,8.7e-18,0.31 GT:PL:GQ 0/1:105,0,255:99 chr1 89652102 . A T 37 . DP=49;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,21,5,10;MQ=52;FQ=40;PV4=1,1e-18,8.5e-19,0.41 GT:PL:GQ 0/1:67,0,255:70 chr1 89726592 . G A 76 . DP=17;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,17;MQ=60;FQ=-78 GT:PL:GQ 1/1:109,51,0:99 chr1 89727870 . A T 142 . DP=12;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,0,8,1;MQ=60;FQ=36;PV4=1,0.3,1,1 GT:PL:GQ 0/1:172,0,63:66 chr1 89730723 . C T 225 . DP=36;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,12,3,17;MQ=59;FQ=211;PV4=1,0.22,0.2,0.37 GT:PL:GQ 0/1:255,0,238:99 chr1 89732237 . G A 62 . DP=60;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,22,3,32;MQ=60;FQ=65;PV4=1,2.1e-24,0.21,1 GT:PL:GQ 0/1:92,0,209:95 chr1 89733273 . T C 158 . DP=26;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,13,1,10;MQ=59;FQ=161;PV4=1,1,0.13,1 GT:PL:GQ 0/1:188,0,221:99 chr1 89845926 . GTTTTTTTTT GTTTTTTTT 36.5 . INDEL;DP=79;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,51,20;MQ=60;FQ=-249 GT:PL:GQ 1/1:77,214,0:99 chr1 89847372 . G T 222 . DP=73;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,37,35;MQ=59;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr1 89847411 . C T 222 . DP=64;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,30,30;MQ=59;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr1 89847444 . A G 222 . DP=59;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,32,23;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 89849201 . C G 91 . DP=9;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,7,2;MQ=60;FQ=-54 GT:PL:GQ 1/1:124,27,0:51 chr1 89849350 . G A 222 . DP=16;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,5,11;MQ=59;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 89849441 . T G 111 . DP=7;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,3,4;MQ=60;FQ=-48 GT:PL:GQ 1/1:144,21,0:39 chr1 89849574 . G A 39 . DP=8;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=57;FQ=41;PV4=1,0.00029,0.24,1 GT:PL:GQ 0/1:69,0,75:71 chr1 89849742 . A T 222 . DP=39;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,23;MQ=59;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 89885854 . G A 147 . DP=16;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,8;MQ=60;FQ=-66 GT:PL:GQ 1/1:180,39,0:75 chr1 89888530 . C T 159 . DP=54;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,48,4;MQ=42;FQ=-184 GT:PL:GQ 1/1:192,157,0:99 chr1 89888552 . T A 222 . DP=73;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,67,6;MQ=47;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr1 89888585 . C G 36.3 . DP=102;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,5,0;MQ=44;FQ=-42 GT:PL:GQ 1/1:69,15,0:27 chr1 90048132 . T C 33 . DP=3;VDB=0.0176;AF1=0.5002;AC1=1;DP4=1,0,2,0;MQ=60;FQ=4.77;PV4=1,1,1,1 GT:PL:GQ 0/1:63,0,30:33 chr1 90049040 . A G 225 . DP=164;VDB=0.0380;AF1=0.5;AC1=1;DP4=60,18,50,32;MQ=60;FQ=225;PV4=0.04,0.041,1,0.15 GT:PL:GQ 0/1:255,0,255:99 chr1 90171835 . C T 141 . DP=53;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,45,5;MQ=60;FQ=-178 GT:PL:GQ 1/1:174,151,0:99 chr1 90178743 . A G 222 . DP=77;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,38,36;MQ=59;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr1 90179532 . A G 222 . DP=159;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,74,79;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 90475877 . G A 19.1 . DP=28;VDB=0.0025;AF1=0.5;AC1=1;DP4=1,16,1,8;MQ=60;FQ=22;PV4=1,1.5e-16,1,0.27 GT:PL:GQ 0/1:49,0,218:52 chr1 90486412 . T G 78 . DP=34;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,10,10,4;MQ=60;FQ=81;PV4=0.29,8e-11,1,0.5 GT:PL:GQ 0/1:108,0,255:99 chr1 90493026 . G A 107 . DP=91;VDB=0.0398;AF1=0.5;AC1=1;DP4=15,31,9,28;MQ=60;FQ=110;PV4=0.47,8.5e-36,1,1 GT:PL:GQ 0/1:137,0,255:99 chr1 91404256 . C A 225 . DP=47;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,14,12,10;MQ=59;FQ=225;PV4=0.56,0.22,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 91447985 . C T 139 . DP=30;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,26;MQ=60;FQ=-114 GT:PL:GQ 1/1:172,87,0:99 chr1 91728053 . G A 210 . DP=25;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,11,14;MQ=60;FQ=-102 GT:PL:GQ 1/1:243,75,0:99 chr1 91739208 . C T 73 . DP=8;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:106,24,0:45 chr1 91739414 . G A 28 . DP=8;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:61,24,0:44 chr1 91781413 . T G 131 . DP=24;VDB=0.0393;AF1=0.5;AC1=1;DP4=8,8,4,3;MQ=60;FQ=134;PV4=1,1,1,1 GT:PL:GQ 0/1:161,0,255:99 chr1 91781644 . C G 126 . DP=19;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,7,7,1;MQ=60;FQ=129;PV4=0.059,0.19,1,1 GT:PL:GQ 0/1:156,0,241:99 chr1 91782031 . T C 109 . DP=21;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,9,0,9;MQ=60;FQ=112;PV4=1,0.44,1,1 GT:PL:GQ 0/1:139,0,174:99 chr1 91784887 . G A 121 . DP=74;VDB=0.0365;AF1=0.5;AC1=1;DP4=32,14,15,11;MQ=59;FQ=124;PV4=0.32,5.3e-24,0.34,1 GT:PL:GQ 0/1:151,0,255:99 chr1 91793877 . T C 74.3 . DP=5;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:107,15,0:27 chr1 91813184 . C T 78.5 . DP=4;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:111,12,0:21 chr1 91841301 . T C 222 . DP=26;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,3,22;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 91846374 . C A 35 . DP=3;VDB=0.0199;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:67,9,0:16 chr1 91846595 . TA TAA 10.6 . INDEL;DP=3;VDB=0.0214;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:49,6,0:9 chr1 91851253 . T C 137 . DP=28;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,12,14;MQ=59;FQ=-105 GT:PL:GQ 1/1:170,78,0:99 chr1 91859795 . T C 222 . DP=40;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,18;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 91859801 . A G 144 . DP=43;VDB=0.0359;AF1=0.5;AC1=1;DP4=10,11,11,9;MQ=60;FQ=147;PV4=0.76,2.3e-19,1,0.057 GT:PL:GQ 0/1:174,0,255:99 chr1 91870410 . G C 186 . DP=83;VDB=0.0399;AF1=0.5;AC1=1;DP4=28,11,20,15;MQ=60;FQ=189;PV4=0.23,8.2e-08,1,0.42 GT:PL:GQ 0/1:216,0,255:99 chr1 91870626 . C T 5.46 . DP=5;VDB=0.0030;AF1=0.4999;AC1=1;DP4=0,2,0,3;MQ=60;FQ=7.78;PV4=1,0.00035,1,0.15 GT:PL:GQ 0/1:34,0,56:34 chr1 91973557 . T G 86 . DP=22;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,3,19;MQ=60;FQ=-93 GT:PL:GQ 1/1:119,66,0:99 chr1 91980447 . A G 202 . DP=168;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,93,64;MQ=60;FQ=-282 GT:PL:GQ 1/1:235,255,0:99 chr1 91989572 . T G 64 . DP=28;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,25,0;MQ=59;FQ=-102 GT:PL:GQ 1/1:97,75,0:99 chr1 92149277 . C T 6.2 . DP=3;VDB=0.0133;AF1=0.5009;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-4.98;PV4=1,0.14,1,1 GT:PL:GQ 0/1:35,0,24:28 chr1 92174260 . A G 222 . DP=66;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,22,43;MQ=59;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr1 92177938 . A G 16.1 . DP=109;VDB=0.0365;AF1=0.5;AC1=1;DP4=30,36,18,11;MQ=60;FQ=19.1;PV4=0.18,1.7e-32,1,0.43 GT:PL:GQ 0/1:46,0,255:49 chr1 92184814 . G T 188 . DP=53;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,41,8;MQ=60;FQ=-175 GT:PL:GQ 1/1:221,148,0:99 chr1 92185657 . C T 222 . DP=23;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,11,8;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr1 92200593 . A G 77 . DP=40;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,22,2,13;MQ=59;FQ=80;PV4=0.63,5.4e-10,1,1 GT:PL:GQ 0/1:107,0,244:99 chr1 92200597 . G A 70 . DP=36;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,12,1,19;MQ=59;FQ=73;PV4=0.56,1.6e-12,0.21,1 GT:PL:GQ 0/1:100,0,208:99 chr1 92200627 . T C 109 . DP=21;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,19;MQ=59;FQ=-90 GT:PL:GQ 1/1:142,63,0:99 chr1 92224067 . C T 222 . DP=24;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,20,2;MQ=59;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 92224347 . G A 142 . DP=17;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,2,15;MQ=60;FQ=-78 GT:PL:GQ 1/1:175,51,0:99 chr1 92262874 . T C 144 . DP=26;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,21,5;MQ=59;FQ=-105 GT:PL:GQ 1/1:177,78,0:99 chr1 92428495 . C A 167 . DP=51;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,12,38;MQ=60;FQ=-178 GT:PL:GQ 1/1:200,151,0:99 chr1 92446398 . T A 136 . DP=28;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,16,9;MQ=59;FQ=-102 GT:PL:GQ 1/1:169,75,0:99 chr1 92457843 . C T 167 . DP=22;VDB=0.0322;AF1=1;AC1=2;DP4=1,0,11,9;MQ=59;FQ=-54;PV4=1,2.8e-05,0.41,1 GT:PL:GQ 1/1:200,27,0:51 chr1 92568263 . A G 36.1 . DP=8;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:69,21,0:39 chr1 92573670 . G A 38 . DP=23;VDB=0.0066;AF1=0.5;AC1=1;DP4=3,7,3,8;MQ=59;FQ=41;PV4=1,1.1e-08,1,1 GT:PL:GQ 0/1:68,0,206:71 chr1 92646021 . G A 132 . DP=53;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,17,34;MQ=60;FQ=-181 GT:PL:GQ 1/1:165,154,0:99 chr1 92647223 . A G 196 . DP=43;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,37,6;MQ=59;FQ=-156 GT:PL:GQ 1/1:229,129,0:99 chr1 92647532 . C A 175 . DP=48;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,29,16;MQ=59;FQ=-162 GT:PL:GQ 1/1:208,135,0:99 chr1 92711067 . A T 117 . DP=23;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,15,5;MQ=60;FQ=-87 GT:PL:GQ 1/1:150,60,0:99 chr1 92712266 . C T 203 . DP=13;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,12;MQ=60;FQ=-66 GT:PL:GQ 1/1:236,39,0:75 chr1 92712598 . gaaaa gaa 214 . INDEL;DP=57;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,30,27;MQ=60;FQ=-207 GT:PL:GQ 1/1:255,172,0:99 chr1 92735359 . T C 170 . DP=10;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,9;MQ=60;FQ=-57 GT:PL:GQ 1/1:203,30,0:57 chr1 92764828 . T A 43.5 . DP=4;VDB=0.0318;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:76,12,0:21 chr1 92765848 . A T 64 . DP=9;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:97,27,0:51 chr1 92852504 . A G 116 . DP=5;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,3,2;MQ=60;FQ=-42 GT:PL:GQ 1/1:149,15,0:27 chr1 92946479 . G A 87.1 . DP=8;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:120,18,0:33 chr1 92979354 . A G 222 . DP=86;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,41,42;MQ=59;FQ=-277 GT:PL:GQ 1/1:255,250,0:99 chr1 93071048 . G T 98 . DP=50;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,42;MQ=59;FQ=-159 GT:PL:GQ 1/1:131,132,0:99 chr1 93089823 . T C 165 . DP=41;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,18,21;MQ=59;FQ=-144 GT:PL:GQ 1/1:198,117,0:99 chr1 93128854 . A G 93 . DP=13;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,9,3;MQ=60;FQ=-63 GT:PL:GQ 1/1:126,36,0:69 chr1 93160902 . T C 221 . DP=63;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,45;MQ=59;FQ=-208 GT:PL:GQ 1/1:254,181,0:99 chr1 93163385 . A G 188 . DP=24;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,8;MQ=60;FQ=-96 GT:PL:GQ 1/1:221,69,0:99 chr1 93167854 . A G 147 . DP=20;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,2,17;MQ=60;FQ=-84 GT:PL:GQ 1/1:180,57,0:99 chr1 93306317 . G A 181 . DP=57;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,23,30;MQ=59;FQ=-187 GT:PL:GQ 1/1:214,160,0:99 chr1 93545157 . G A 44 . DP=36;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,14,1,15;MQ=59;FQ=47;PV4=0.19,4.4e-14,0.14,0.28 GT:PL:GQ 0/1:74,0,255:77 chr1 93580402 . T A 45 . DP=15;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,5,2,6;MQ=60;FQ=48;PV4=1,1.9e-06,1,1 GT:PL:GQ 0/1:75,0,139:78 chr1 93580581 . G C 211 . DP=34;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,15;MQ=59;FQ=-126 GT:PL:GQ 1/1:244,99,0:99 chr1 93602194 . C T 144 . DP=35;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,32,2;MQ=59;FQ=-129 GT:PL:GQ 1/1:177,102,0:99 chr1 93649111 . G A 64 . DP=18;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,10,0,5;MQ=60;FQ=67;PV4=1,1,1,1 GT:PL:GQ 0/1:94,0,190:97 chr1 93672688 . C T 85 . DP=17;VDB=0.0118;AF1=0.5;AC1=1;DP4=8,1,6,0;MQ=60;FQ=88;PV4=1,0.38,1,1 GT:PL:GQ 0/1:115,0,174:99 chr1 93672723 . A C 44 . DP=25;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,3,11,2;MQ=59;FQ=47;PV4=0.63,8.7e-12,0.18,0.4 GT:PL:GQ 0/1:74,0,209:77 chr1 93683210 . A G 45.5 . DP=4;VDB=0.0017;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:78,12,0:21 chr1 93698222 . C G 17.1 . DP=4;VDB=0.0030;AF1=0.5003;AC1=1;DP4=0,1,0,3;MQ=60;FQ=4.09;PV4=1,0.00071,1,0.15 GT:PL:GQ 0/1:47,0,29:32 chr1 93712465 . G C 17.1 . DP=5;VDB=0.0199;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=55;FQ=17.6;PV4=1,0.074,1,0.25 GT:PL:GQ 0/1:47,0,48:47 chr1 93720070 . C G 37 . DP=14;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,1,4,1;MQ=60;FQ=40;PV4=1,0.022,1,1 GT:PL:GQ 0/1:67,0,151:70 chr1 93744055 . G A 225 . DP=30;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,9,6,8;MQ=60;FQ=225;PV4=1,0.32,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 93826178 . A T 60 . DP=44;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,21,1,16;MQ=60;FQ=63;PV4=1,4.8e-18,1,1 GT:PL:GQ 0/1:90,0,243:93 chr1 94009830 . C T 87 . DP=8;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,2,0,5;MQ=60;FQ=26;PV4=1,0.18,1,0.37 GT:PL:GQ 0/1:117,0,53:56 chr1 94312482 . TC TCC 214 . INDEL;DP=41;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,18;MQ=48;FQ=-134 GT:PL:GQ 1/1:255,99,0:99 chr1 94335194 . A T 12 . DP=2;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr1 94341137 . C T 64.1 . DP=7;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:97,18,0:33 chr1 94341267 . A G 177 . DP=71;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,35,31;MQ=60;FQ=-226 GT:PL:GQ 1/1:210,199,0:99 chr1 94342564 . C A 180 . DP=109;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,21,81;MQ=60;FQ=-282 GT:PL:GQ 1/1:213,255,0:99 chr1 94343023 . A G 201 . DP=112;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,50,61;MQ=60;FQ=-282 GT:PL:GQ 1/1:234,255,0:99 chr1 94343233 . T C 222 . DP=132;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,63,62;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 94344716 . C T 222 . DP=173;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,77,88;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 94463795 . C G 15.1 . DP=7;VDB=0.0082;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=57;FQ=18;PV4=1,0.0081,1,1 GT:PL:GQ 0/1:45,0,64:48 chr1 94466659 . A G 125 . DP=7;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:158,21,0:39 chr1 94467221 . G A 225 . DP=66;VDB=0.0392;AF1=0.5;AC1=1;DP4=29,11,17,7;MQ=59;FQ=225;PV4=1,0.42,0.36,1 GT:PL:GQ 0/1:255,0,255:99 chr1 94467238 . G A 120 . DP=75;VDB=0.0400;AF1=0.5;AC1=1;DP4=31,17,16,11;MQ=60;FQ=123;PV4=0.8,1.3e-19,0.092,1 GT:PL:GQ 0/1:150,0,255:99 chr1 94467407 . C T 225 . DP=66;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,18,18,14;MQ=59;FQ=225;PV4=0.46,0.13,1,0.25 GT:PL:GQ 0/1:255,0,255:99 chr1 94467447 . G A 187 . DP=71;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,25,16,17;MQ=60;FQ=190;PV4=0.15,8.1e-12,1,1 GT:PL:GQ 0/1:217,0,255:99 chr1 94471075 . A G 135 . DP=132;VDB=0.0400;AF1=0.5;AC1=1;DP4=25,50,16,36;MQ=59;FQ=138;PV4=0.85,6.3e-46,0.018,0.26 GT:PL:GQ 0/1:165,0,255:99 chr1 94471223 . C T 7.8 . DP=4;VDB=0.0060;AF1=0.5006;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-3.72;PV4=1,0.32,1,0.41 GT:PL:GQ 0/1:37,0,26:30 chr1 94476555 . G A 17.3 . DP=9;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:50,15,0:25 chr1 94480037 . C T 40 . DP=10;VDB=0.0002;AF1=0.5;AC1=1;DP4=4,0,6,0;MQ=58;FQ=43;PV4=1,2.7e-06,0.22,0.44 GT:PL:GQ 0/1:70,0,98:73 chr1 94484059 . ATT AT 217 . INDEL;DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,18,19,14;MQ=60;FQ=217;PV4=0.21,5.9e-15,1,0.22 GT:PL:GQ 0/1:255,0,255:99 chr1 94487285 . AACA AA 213 . INDEL;DP=39;VDB=0.0244;AF1=0.5;AC1=1;DP4=18,7,13,1;MQ=59;FQ=215;PV4=0.22,5.8e-16,0.092,1 GT:PL:GQ 0/1:251,0,255:99 chr1 94487354 . G A 169 . DP=80;VDB=0.0398;AF1=0.5;AC1=1;DP4=27,11,28,11;MQ=60;FQ=172;PV4=1,4.3e-23,1,0.19 GT:PL:GQ 0/1:199,0,255:99 chr1 94495930 . T C 29 . DP=5;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:61,9,0:16 chr1 94496253 . G A 22 . DP=5;VDB=0.0184;AF1=0.5;AC1=1;DP4=0,3,0,2;MQ=60;FQ=25;PV4=1,0.41,1,0.13 GT:PL:GQ 0/1:52,0,82:55 chr1 94511533 . G A 112 . DP=17;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,6,0,9;MQ=60;FQ=88;PV4=1,0.25,1,1 GT:PL:GQ 0/1:142,0,115:99 chr1 94512565 . C T 167 . DP=38;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,6,13,10;MQ=60;FQ=170;PV4=1,6.7e-13,1,1 GT:PL:GQ 0/1:197,0,219:99 chr1 94544233 . G A 225 . DP=72;VDB=0.0365;AF1=0.5;AC1=1;DP4=37,12,16,7;MQ=59;FQ=225;PV4=0.58,1,0.48,0.3 GT:PL:GQ 0/1:255,0,255:99 chr1 94544276 . G A 37 . DP=84;VDB=0.0398;AF1=0.5;AC1=1;DP4=32,27,9,12;MQ=60;FQ=40;PV4=0.45,1e-37,1,0.33 GT:PL:GQ 0/1:67,0,255:70 chr1 94544326 . GTT GT 42.5 . INDEL;DP=63;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,37,1,14;MQ=60;FQ=45.5;PV4=0.43,1.5e-15,1,1 GT:PL:GQ 0/1:80,0,255:83 chr1 94568491 . A G 12.3 . DP=8;VDB=0.0011;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=15.1;PV4=1,0.0021,1,1 GT:PL:GQ 0/1:42,0,96:44 chr1 94576968 . T C 35 . DP=15;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,3,6,1;MQ=58;FQ=38;PV4=0.56,2.5e-06,0.17,1 GT:PL:GQ 0/1:65,0,172:68 chr1 94578548 . T C 222 . DP=64;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,44,18;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 94639337 . A G 78 . DP=22;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,18,1;MQ=59;FQ=-84 GT:PL:GQ 1/1:111,57,0:99 chr1 94639447 . C T 222 . DP=192;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,121,65;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 94667970 . T C 77 . DP=28;VDB=0.0081;AF1=0.5;AC1=1;DP4=13,0,14,1;MQ=60;FQ=80;PV4=1,2.2e-17,1,0.18 GT:PL:GQ 0/1:107,0,169:99 chr1 94668046 . C T 183 . DP=83;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,53,27;MQ=60;FQ=-268 GT:PL:GQ 1/1:216,241,0:99 chr1 94670784 . T C 136 . DP=20;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,10,1,7;MQ=60;FQ=139;PV4=1,1,1,1 GT:PL:GQ 0/1:166,0,195:99 chr1 94674723 . G A 130 . DP=13;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,12,1;MQ=58;FQ=-66 GT:PL:GQ 1/1:163,39,0:75 chr1 94930345 . G A 30 . DP=43;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,12,10,3;MQ=59;FQ=33;PV4=0.16,8.4e-21,0.094,0.24 GT:PL:GQ 0/1:60,0,255:63 chr1 94943893 . C A 4.13 . DP=4;VDB=0.0129;AF1=0.4998;AC1=1;DP4=1,1,1,1;MQ=60;FQ=6.2;PV4=1,0.0059,1,0.0025 GT:PL:GQ 0/1:32,0,65:31 chr1 94980671 . C G 222 . DP=48;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,30,17;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 95001600 . A C 206 . DP=21;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,9;MQ=60;FQ=-90 GT:PL:GQ 1/1:239,63,0:99 chr1 95211525 . G A 129 . DP=37;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,10,5,14;MQ=59;FQ=132;PV4=0.31,2.2e-17,0.17,0.13 GT:PL:GQ 0/1:159,0,255:99 chr1 95286085 . G A 67 . DP=13;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,3,3,3;MQ=58;FQ=70;PV4=1,9.4e-06,1,0.16 GT:PL:GQ 0/1:97,0,151:99 chr1 95286094 . G T 222 . DP=13;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,7,6;MQ=58;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr1 95286658 . C A 117 . DP=33;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,9,4,13;MQ=49;FQ=120;PV4=0.69,3.2e-09,2.8e-07,0.28 GT:PL:GQ 0/1:147,0,246:99 chr1 95286675 . GTCCCAAATGTAAATC GTC 95.5 . INDEL;DP=25;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,7,2,8;MQ=47;FQ=98.5;PV4=1,1,2.9e-16,1 GT:PL:GQ 0/1:133,0,255:99 chr1 95290003 . C T 76 . DP=9;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,0,2,3;MQ=60;FQ=69.5;PV4=0.17,0.063,1,1 GT:PL:GQ 0/1:106,0,97:99 chr1 95291366 . A G 131 . DP=30;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,25,4;MQ=60;FQ=-114 GT:PL:GQ 1/1:164,87,0:99 chr1 95305440 . A G 225 . DP=244;VDB=0.0345;AF1=0.5;AC1=1;DP4=82,49,67,45;MQ=60;FQ=225;PV4=0.69,0.076,0.49,0.4 GT:PL:GQ 0/1:255,0,255:99 chr1 95330372 . G A 222 . DP=70;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,47,23;MQ=59;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr1 95332864 . C T 25 . DP=29;VDB=0.0216;AF1=0.5;AC1=1;DP4=12,4,9,2;MQ=59;FQ=28;PV4=1,2.4e-12,1,0.34 GT:PL:GQ 0/1:55,0,255:58 chr1 95333068 . G T 116 . DP=29;VDB=0.0384;AF1=0.5;AC1=1;DP4=2,8,5,12;MQ=59;FQ=119;PV4=0.68,1.9e-09,1,1 GT:PL:GQ 0/1:146,0,173:99 chr1 95360309 . C T 40 . DP=12;VDB=0.0099;AF1=0.5;AC1=1;DP4=5,0,7,0;MQ=60;FQ=43;PV4=1,3.2e-06,1,1 GT:PL:GQ 0/1:70,0,110:73 chr1 95367136 . G A 79.5 . DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:112,12,0:21 chr1 95367894 . A C 62 . DP=12;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-63 GT:PL:GQ 1/1:95,36,0:69 chr1 95369136 . C T 142 . DP=48;VDB=0.0384;AF1=0.5;AC1=1;DP4=8,19,7,14;MQ=59;FQ=145;PV4=1,6.6e-11,0.43,0.11 GT:PL:GQ 0/1:172,0,255:99 chr1 95369211 . T G 179 . DP=19;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81 GT:PL:GQ 1/1:212,54,0:99 chr1 95615767 . T G 6.23 . DP=4;VDB=0.0135;AF1=0.505;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-10.5;PV4=1,0.33,1,1 GT:PL:GQ 0/1:35,0,17:22 chr1 95696612 . C T 104 . DP=33;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,14,3,12;MQ=59;FQ=107;PV4=1,4.9e-12,1,1 GT:PL:GQ 0/1:134,0,255:99 chr1 95705615 . G A 116 . DP=36;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,6,25;MQ=60;FQ=-120 GT:PL:GQ 1/1:149,93,0:99 chr1 95709821 . T C 222 . DP=118;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,65,48;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 95709939 . T G 202 . DP=105;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,54,47;MQ=60;FQ=-282 GT:PL:GQ 1/1:235,255,0:99 chr1 97547831 . G A 222 . DP=71;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,64,6;MQ=59;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr1 98348885 . G A 222 . DP=74;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,30,44;MQ=59;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr1 98349390 . CAAAAAAAAAAA CAAAAAAAAAAAA,CAAAAAAAAAAAAA 16.6 . INDEL;DP=29;VDB=0.0393;AF1=1;AC1=2;DP4=1,2,6,15;MQ=60;FQ=-66.5;PV4=1,1,1,0.13 GT:PL:GQ 1/1:57,32,0,49,27,46:45 chr1 99150635 . G A 216 . DP=33;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,20,13;MQ=59;FQ=-126 GT:PL:GQ 1/1:249,99,0:99 chr1 99164434 . G A 222 . DP=52;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,17,34;MQ=59;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 99225627 . G A 222 . DP=95;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,46,47;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 99358542 . C T 42 . DP=52;VDB=0.0164;AF1=0.5;AC1=1;DP4=23,2,24,1;MQ=59;FQ=45;PV4=1,7e-23,1,1 GT:PL:GQ 0/1:72,0,240:75 chr1 99358761 . T C 201 . DP=32;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,15,2,14;MQ=60;FQ=183;PV4=1,0.25,1,1 GT:PL:GQ 0/1:231,0,210:99 chr1 99418911 . Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg TTGTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg,TTGTGTGTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 97.4 . INDEL;DP=24;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,5;MQ=50;FQ=-43.5 GT:PL:GQ 1/1:176,48,39,138,0,132:16 chr1 99753502 . CTTT CTT 164 . INDEL;DP=33;VDB=0.0164;AF1=0.5;AC1=1;DP4=14,1,15,3;MQ=60;FQ=119;PV4=0.61,2.3e-16,1,1 GT:PL:GQ 0/1:202,0,154:99 chr1 100152443 . T C 46 . DP=18;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,3,6,6;MQ=59;FQ=49;PV4=1,6.7e-09,0.25,1 GT:PL:GQ 0/1:76,0,133:79 chr1 100316589 . A G 110 . DP=28;VDB=0.0244;AF1=0.5;AC1=1;DP4=12,2,10,4;MQ=59;FQ=113;PV4=0.65,2.4e-08,0.16,0.47 GT:PL:GQ 0/1:140,0,226:99 chr1 100316765 . C T 31 . DP=20;VDB=0.0392;AF1=0.5;AC1=1;DP4=0,12,1,7;MQ=60;FQ=34;PV4=0.4,5.7e-06,1,0.43 GT:PL:GQ 0/1:61,0,159:64 chr1 100329889 . G C 67 . DP=67;VDB=0.0140;AF1=0.5;AC1=1;DP4=32,1,31,3;MQ=59;FQ=70;PV4=0.61,1.2e-34,0.081,1 GT:PL:GQ 0/1:97,0,218:99 chr1 100336361 . C T 132 . DP=34;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,3,12,10;MQ=60;FQ=135;PV4=0.29,6.9e-14,1,1 GT:PL:GQ 0/1:162,0,207:99 chr1 100340225 . G A 175 . DP=61;VDB=0.0298;AF1=0.5;AC1=1;DP4=32,2,25,1;MQ=60;FQ=178;PV4=1,0.056,1,1 GT:PL:GQ 0/1:205,0,247:99 chr1 100342227 . C T 99 . DP=65;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,33,3,28;MQ=59;FQ=102;PV4=0.11,1.5e-27,0.034,1 GT:PL:GQ 0/1:129,0,188:99 chr1 100343153 . A G 129 . DP=18;VDB=0.0081;AF1=0.5;AC1=1;DP4=8,0,10,0;MQ=60;FQ=114;PV4=1,1,1,1 GT:PL:GQ 0/1:159,0,141:99 chr1 100345409 . C G 51 . DP=25;VDB=0.0014;AF1=0.5;AC1=1;DP4=10,1,14,0;MQ=60;FQ=54;PV4=0.44,1.6e-08,1,0.25 GT:PL:GQ 0/1:81,0,180:84 chr1 100346741 . T C 117 . DP=62;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,23,12,19;MQ=60;FQ=120;PV4=0.076,2.6e-33,1,0.39 GT:PL:GQ 0/1:147,0,255:99 chr1 100353675 . G A 129 . DP=89;VDB=0.0345;AF1=0.5;AC1=1;DP4=22,31,12,22;MQ=60;FQ=132;PV4=0.65,7.4e-27,1,0.43 GT:PL:GQ 0/1:159,0,255:99 chr1 100357141 . T A 66 . DP=34;VDB=0.0271;AF1=0.5;AC1=1;DP4=12,1,16,2;MQ=60;FQ=69;PV4=1,1.5e-16,1,1 GT:PL:GQ 0/1:96,0,186:99 chr1 100358200 . G A 68 . DP=52;VDB=0.0140;AF1=0.5;AC1=1;DP4=2,25,1,24;MQ=59;FQ=71;PV4=1,9.6e-24,0.48,1 GT:PL:GQ 0/1:98,0,235:99 chr1 100376448 . G A 44 . DP=34;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,11,2,19;MQ=60;FQ=47;PV4=1,3.9e-18,1,1 GT:PL:GQ 0/1:74,0,179:77 chr1 100376456 . T A 85 . DP=30;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,10,1,18;MQ=60;FQ=88;PV4=1,1.7e-06,1,1 GT:PL:GQ 0/1:115,0,164:99 chr1 100515616 . T C 89 . DP=35;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,10,3,16;MQ=60;FQ=92;PV4=0.42,1.9e-09,1,1 GT:PL:GQ 0/1:119,0,247:99 chr1 100598866 . G A 27.5 . DP=31;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:60,12,0:21 chr1 100598867 . C T 32.3 . DP=31;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:65,15,0:27 chr1 100617887 . C T 189 . DP=35;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,32,1;MQ=59;FQ=-126 GT:PL:GQ 1/1:222,99,0:99 chr1 100672060 . T C 174 . DP=37;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,24,12;MQ=60;FQ=-135 GT:PL:GQ 1/1:207,108,0:99 chr1 100715454 . G A 194 . DP=32;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,2,28;MQ=60;FQ=-117 GT:PL:GQ 1/1:227,90,0:99 chr1 100733207 . gtttttttttttttt gTTtttttttttttttt,gTtttttttttttttt 19.5 . INDEL;DP=86;VDB=0.0343;AF1=1;AC1=2;DP4=0,1,17,31;MQ=60;FQ=-78.5;PV4=1,1,0.44,1 GT:PL:GQ 1/1:77,61,17,123,0,44:60 chr1 100733552 . T C 34.8 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:66,6,0:10 chr1 100750733 . Agttttgttttgttttgttttgttttgtttt Agttttgttttgttttgttttgtttt 214 . INDEL;DP=15;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,12,3;MQ=60;FQ=-79.5 GT:PL:GQ 1/1:255,45,0:87 chr1 100817384 . A G 117 . DP=29;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,12,6,8;MQ=60;FQ=120;PV4=0.25,1.8e-13,1,1 GT:PL:GQ 0/1:147,0,241:99 chr1 100818464 . T C 88 . DP=12;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,10,1;MQ=58;FQ=-60 GT:PL:GQ 1/1:121,33,0:63 chr1 100819273 . T C 32 . DP=6;VDB=0.0334;AF1=0.501;AC1=1;DP4=1,0,3,1;MQ=60;FQ=-4.76;PV4=1,0.019,1,0.25 GT:PL:GQ 0/1:62,0,24:27 chr1 100856479 . C T 225 . DP=84;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,24,16,28;MQ=60;FQ=225;PV4=1,0.28,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 100908577 . A T 105 . DP=27;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,6,7,11;MQ=60;FQ=108;PV4=1,3.3e-14,1,0.42 GT:PL:GQ 0/1:135,0,180:99 chr1 100949860 . G A 173 . DP=19;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,4,6,3;MQ=59;FQ=160;PV4=1,1,1,0.22 GT:PL:GQ 0/1:203,0,187:99 chr1 100970346 . T C 164 . DP=126;VDB=0.0399;AF1=0.5;AC1=1;DP4=41,22,44,14;MQ=60;FQ=167;PV4=0.23,1.8e-36,1,1 GT:PL:GQ 0/1:194,0,255:99 chr1 101005090 . G A 181 . DP=17;VDB=0.0343;AF1=1;AC1=2;DP4=0,0,8,7;MQ=60;FQ=-72 GT:PL:GQ 1/1:214,45,0:87 chr1 101203827 . G A 192 . DP=47;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,28;MQ=59;FQ=-162 GT:PL:GQ 1/1:225,135,0:99 chr1 101342497 . T C 164 . DP=16;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,15;MQ=58;FQ=-72 GT:PL:GQ 1/1:197,45,0:87 chr1 102271774 . G A 225 . DP=124;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,33,22,41;MQ=59;FQ=225;PV4=0.46,0.32,0.31,1 GT:PL:GQ 0/1:255,0,255:99 chr1 102312412 . G A 60 . DP=69;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,22,10,12;MQ=60;FQ=63;PV4=0.8,7.7e-20,1,0.26 GT:PL:GQ 0/1:90,0,255:93 chr1 103343470 . G A 115 . DP=15;VDB=0.0033;AF1=0.5;AC1=1;DP4=7,0,8,0;MQ=60;FQ=97;PV4=1,1,1,1 GT:PL:GQ 0/1:145,0,124:99 chr1 103352451 . A G 163 . DP=108;VDB=0.0398;AF1=0.5;AC1=1;DP4=28,29,29,20;MQ=60;FQ=166;PV4=0.33,2.2e-28,0.14,1 GT:PL:GQ 0/1:193,0,255:99 chr1 103354138 . A G 218 . DP=40;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,25,12;MQ=60;FQ=-138 GT:PL:GQ 1/1:251,111,0:99 chr1 103354428 . A G 195 . DP=32;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,18;MQ=60;FQ=-123 GT:PL:GQ 1/1:228,96,0:99 chr1 103354939 . Ctgtgtgtgtgtgtgtgtgtgtgtgtgt CTGtgtgtgtgtgtgtgtgtgtgtgtgtgt 213 . INDEL;DP=11;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,6,1;MQ=59;FQ=-55.5 GT:PL:GQ 1/1:253,21,0:39 chr1 103356168 . A C 8.61 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:40,9,0:12 chr1 103364618 . A T 15.1 . DP=9;VDB=0.0313;AF1=0.5;AC1=1;DP4=2,3,1,3;MQ=60;FQ=18.1;PV4=1,8.3e-05,1,1 GT:PL:GQ 0/1:45,0,136:48 chr1 103379918 . G A 91 . DP=27;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,9,7,7;MQ=60;FQ=94;PV4=0.25,1.8e-11,1,0.052 GT:PL:GQ 0/1:121,0,226:99 chr1 103385791 . C G 92 . DP=61;VDB=0.0190;AF1=0.5;AC1=1;DP4=31,4,23,2;MQ=60;FQ=95;PV4=1,1.1e-18,1,1 GT:PL:GQ 0/1:122,0,255:99 chr1 103388799 . TACA TA 136 . INDEL;DP=16;VDB=0.0053;AF1=0.5;AC1=1;DP4=9,1,6,0;MQ=60;FQ=139;PV4=1,1.2e-14,1,0.43 GT:PL:GQ 0/1:174,0,255:99 chr1 103428389 . G A 143 . DP=21;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,3,17;MQ=60;FQ=-87 GT:PL:GQ 1/1:176,60,0:99 chr1 103444679 . T G 209 . DP=53;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,23,28;MQ=60;FQ=-181 GT:PL:GQ 1/1:242,154,0:99 chr1 103449598 . G C 101 . DP=5;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:134,15,0:27 chr1 103455217 . C T 90.5 . DP=4;VDB=0.0027;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:123,12,0:21 chr1 103461508 . T A 106 . DP=10;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,3;MQ=58;FQ=-57 GT:PL:GQ 1/1:139,30,0:57 chr1 103462473 . A G 11.1 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr1 103467615 . C T 111 . DP=7;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:144,18,0:33 chr1 103468609 . A G 71 . DP=16;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,13,2;MQ=58;FQ=-72 GT:PL:GQ 1/1:104,45,0:87 chr1 103471456 . Ccatcatcatcatcatcatcatcatcatcatca Ccatcatcatcatcatcatcatcatcatca 214 . INDEL;DP=45;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,11,15;MQ=60;FQ=-113 GT:PL:GQ 1/1:255,78,0:99 chr1 103483514 . C T 49.3 . DP=6;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:82,15,0:27 chr1 103496620 . G T 139 . DP=10;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:172,30,0:57 chr1 103496805 . GAAAAAAAAAAAAA GAAAAAAAAAAAA,GAAAAAAAAAAA 23.5 . INDEL;DP=40;VDB=0.0373;AF1=1;AC1=2;DP4=0,1,5,19;MQ=60;FQ=-92.5;PV4=1,0.45,1,0.38 GT:PL:GQ 1/1:64,58,0,64,56,61:78 chr1 103548319 . C G 40.8 . DP=2;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:72,6,0:10 chr1 103573547 . G A 118 . DP=14;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,10,3;MQ=60;FQ=-66 GT:PL:GQ 1/1:151,39,0:75 chr1 104076462 . C T 184 . DP=22;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,17,5;MQ=59;FQ=-93 GT:PL:GQ 1/1:217,66,0:99 chr1 104076495 . A G 184 . DP=20;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,12;MQ=60;FQ=-84 GT:PL:GQ 1/1:217,57,0:99 chr1 104076537 . A T 25.5 . DP=22;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,2,2;MQ=60;FQ=-39 GT:PL:GQ 1/1:58,12,0:21 chr1 104080169 . G C 44.5 . DP=4;VDB=0.0049;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:77,12,0:21 chr1 104084226 . A G 221 . DP=24;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,22;MQ=59;FQ=-96 GT:PL:GQ 1/1:254,69,0:99 chr1 104086145 . A G 222 . DP=20;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,4,16;MQ=59;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr1 104116312 . A G 160 . DP=60;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,5,26,8;MQ=58;FQ=163;PV4=1,1.7e-11,1,0.34 GT:PL:GQ 0/1:190,0,255:99 chr1 104117921 . G A 63 . DP=29;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,5,12,2;MQ=56;FQ=66;PV4=0.38,3.9e-12,1,0.48 GT:PL:GQ 0/1:93,0,242:96 chr1 107979396 . A C 188 . DP=43;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,7,31;MQ=60;FQ=-141 GT:PL:GQ 1/1:221,114,0:99 chr1 108116051 . G A 75 . DP=35;VDB=0.0140;AF1=0.5;AC1=1;DP4=2,12,3,16;MQ=59;FQ=78;PV4=1,2e-16,0.2,1 GT:PL:GQ 0/1:105,0,208:99 chr1 108139003 . C T 41 . DP=18;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,7,1,9;MQ=60;FQ=44;PV4=1,5.1e-08,1,1 GT:PL:GQ 0/1:71,0,118:74 chr1 108152332 . T A 48 . DP=11;VDB=0.0004;AF1=0.5;AC1=1;DP4=3,0,7,0;MQ=60;FQ=42.4;PV4=1,2.2e-05,1,1 GT:PL:GQ 0/1:78,0,70:72 chr1 108292260 . A G 39 . DP=13;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,4,2,4;MQ=56;FQ=42;PV4=1,0.0055,1,1 GT:PL:GQ 0/1:69,0,126:72 chr1 108293844 . T C 168 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,13,2,9;MQ=60;FQ=171;PV4=1,0.37,1,1 GT:PL:GQ 0/1:198,0,255:99 chr1 108299775 . atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 53.5 . INDEL;DP=8;VDB=0.0011;AF1=0.5;AC1=1;DP4=4,0,3,0;MQ=57;FQ=47.8;PV4=1,1,1,1 GT:PL:GQ 0/1:91,0,83:85 chr1 108307642 . C T 154 . DP=12;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,12,0;MQ=56;FQ=-63 GT:PL:GQ 1/1:187,36,0:69 chr1 108307727 . T A 225 . DP=31;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,3,13,6;MQ=59;FQ=167;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,194:99 chr1 108313258 . C T 39.1 . DP=14;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-45 GT:PL:GQ 1/1:72,18,0:33 chr1 108315305 . C T 96 . DP=27;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,26,0;MQ=60;FQ=-105 GT:PL:GQ 1/1:129,78,0:99 chr1 108703708 . T A 24 . DP=21;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,2,7,0;MQ=60;FQ=27;PV4=0.53,0.0025,1,1 GT:PL:GQ 0/1:54,0,194:57 chr1 108703834 . C T 114 . DP=39;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,7,11,13;MQ=59;FQ=117;PV4=0.75,2.2e-21,0.22,1 GT:PL:GQ 0/1:144,0,255:99 chr1 108724518 . A G 32 . DP=41;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,10,15,2;MQ=59;FQ=35;PV4=0.079,4.4e-18,1,1 GT:PL:GQ 0/1:62,0,255:65 chr1 108724693 . G A 36 . DP=9;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,4,0,5;MQ=57;FQ=39;PV4=1,6.6e-05,1,0.12 GT:PL:GQ 0/1:66,0,90:69 chr1 108766424 . A G 134 . DP=56;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,15,5,30;MQ=44;FQ=137;PV4=0.47,3.5e-16,1,1 GT:PL:GQ 0/1:164,0,203:99 chr1 109010269 . G A 137 . DP=139;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,69,10,32;MQ=34;FQ=140;PV4=0.83,0.21,0.055,0.29 GT:PL:GQ 0/1:167,0,255:99 chr1 109103207 . G T 166 . DP=29;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,15,2,11;MQ=59;FQ=140;PV4=0.21,0.12,0.15,0.33 GT:PL:GQ 0/1:196,0,167:99 chr1 109154974 . G A 66 . DP=9;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=60;FQ=69;PV4=1,0.032,1,0.05 GT:PL:GQ 0/1:96,0,123:99 chr1 109170746 . C T 3.54 . DP=21;VDB=0.0042;AF1=0.4998;AC1=1;DP4=12,0,8,0;MQ=59;FQ=5.47;PV4=1,3.4e-13,1,1 GT:PL:GQ 0/1:31,0,168:30 chr1 109173710 . G A 51 . DP=52;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,7,18,2;MQ=60;FQ=54;PV4=0.28,8.8e-20,0.11,0.4 GT:PL:GQ 0/1:81,0,255:84 chr1 109241916 . G A 168 . DP=78;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,19,26,12;MQ=60;FQ=171;PV4=0.16,7.7e-24,0.16,1 GT:PL:GQ 0/1:198,0,255:99 chr1 109255513 . G T 221 . DP=49;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,35,13;MQ=60;FQ=-171 GT:PL:GQ 1/1:254,144,0:99 chr1 109260357 . G A 222 . DP=98;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,76,21;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 109261509 . A G 225 . DP=52;VDB=0.0398;AF1=0.5;AC1=1;DP4=17,6,19,7;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 109265029 . G T 168 . DP=32;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,25,6;MQ=60;FQ=-120 GT:PL:GQ 1/1:201,93,0:99 chr1 109268441 . G A 193 . DP=81;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,13,27,21;MQ=60;FQ=196;PV4=1,2.1e-19,0.21,1 GT:PL:GQ 0/1:223,0,255:99 chr1 109268573 . T C 159 . DP=83;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,22,13,28;MQ=60;FQ=162;PV4=0.36,7.8e-31,1,0.45 GT:PL:GQ 0/1:189,0,255:99 chr1 109270402 . G A 142 . DP=16;VDB=0.0140;AF1=0.5;AC1=1;DP4=7,1,6,2;MQ=60;FQ=143;PV4=1,0.098,1,0.31 GT:PL:GQ 0/1:172,0,174:99 chr1 109273456 . A G 117 . DP=88;VDB=0.0365;AF1=0.5;AC1=1;DP4=25,27,13,23;MQ=60;FQ=120;PV4=0.28,7e-37,0.12,1 GT:PL:GQ 0/1:147,0,255:99 chr1 109273610 . G A 31 . DP=21;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,13,0,8;MQ=60;FQ=34;PV4=1,1e-09,1,0.26 GT:PL:GQ 0/1:61,0,176:64 chr1 109289353 . C G 41 . DP=10;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,2,1,4;MQ=58;FQ=43.9;PV4=0.52,0.15,1,1 GT:PL:GQ 0/1:71,0,89:74 chr1 109289487 . C T 35.2 . DP=5;VDB=0.0300;AF1=0.5263;AC1=1;DP4=0,1,2,2;MQ=44;FQ=-17.1;PV4=1,0.19,1,0.39 GT:PL:GQ 0/1:65,0,10:13 chr1 109299453 . C G 66 . DP=8;VDB=0.0049;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=68.4;PV4=1,0.098,1,0.11 GT:PL:GQ 0/1:96,0,104:98 chr1 109301250 . G C 101 . DP=38;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,14,4,14;MQ=60;FQ=104;PV4=1,5.7e-16,1,0.24 GT:PL:GQ 0/1:131,0,255:99 chr1 109321824 . G T 62 . DP=15;VDB=0.0008;AF1=0.5;AC1=1;DP4=5,0,10,0;MQ=60;FQ=64.8;PV4=1,2.1e-08,1,0.36 GT:PL:GQ 0/1:92,0,105:95 chr1 109337572 . A C 32 . DP=12;VDB=0.0219;AF1=0.5;AC1=1;DP4=2,4,2,4;MQ=60;FQ=35;PV4=1,7.1e-08,1,0.2 GT:PL:GQ 0/1:62,0,164:65 chr1 109342716 . A G 23 . DP=5;VDB=0.0011;AF1=0.5006;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-3.54;PV4=1,0.00019,1,1 GT:PL:GQ 0/1:53,0,26:29 chr1 109351501 . A G 15.1 . DP=11;VDB=0.0163;AF1=0.5;AC1=1;DP4=1,7,0,2;MQ=60;FQ=18.1;PV4=1,1,1,1 GT:PL:GQ 0/1:45,0,181:48 chr1 109358958 . T C 219 . DP=49;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,25,3,18;MQ=60;FQ=191;PV4=0.31,0.17,1,1 GT:PL:GQ 0/1:249,0,218:99 chr1 109363075 . T C 58 . DP=17;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,1,8,1;MQ=60;FQ=61;PV4=1,6.2e-06,1,1 GT:PL:GQ 0/1:88,0,156:91 chr1 109363140 . T C 61 . DP=32;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,10,7,6;MQ=60;FQ=64;PV4=1,2.2e-13,1,1 GT:PL:GQ 0/1:91,0,255:94 chr1 109366370 . C T 219 . DP=35;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,9,2,21;MQ=60;FQ=153;PV4=0.58,1,1,1 GT:PL:GQ 0/1:249,0,180:99 chr1 109369797 . T G 37 . DP=18;VDB=0.0244;AF1=0.5;AC1=1;DP4=8,2,8,0;MQ=59;FQ=40;PV4=0.48,2.5e-07,0.14,0.22 GT:PL:GQ 0/1:67,0,204:70 chr1 109369915 . G T 102 . DP=47;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,14,8,16;MQ=59;FQ=105;PV4=1,9.7e-20,1,0.014 GT:PL:GQ 0/1:132,0,255:99 chr1 109377053 . G A 145 . DP=33;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,4,11,6;MQ=60;FQ=148;PV4=0.71,8.6e-05,1,0.36 GT:PL:GQ 0/1:175,0,235:99 chr1 109377157 . TAAAAAAAAAAAAA TAAAAAAAAAAAA,TAAAAAAAAAAA 19.5 . INDEL;DP=47;VDB=0.0400;AF1=1;AC1=2;DP4=0,1,17,16;MQ=59;FQ=-116;PV4=1,0.46,0.43,0.28 GT:PL:GQ 1/1:60,81,0,59,67,55:95 chr1 109391486 . G A 222 . DP=25;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,17,5;MQ=59;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 109395105 . C T 222 . DP=148;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,74,70;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 109482826 . C T 218 . DP=49;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,17,4,13;MQ=60;FQ=220;PV4=0.21,1,1,1 GT:PL:GQ 0/1:248,0,255:99 chr1 109486196 . A G 164 . DP=74;VDB=0.0399;AF1=0.5;AC1=1;DP4=25,8,24,11;MQ=59;FQ=167;PV4=0.59,5.8e-15,1,1 GT:PL:GQ 0/1:194,0,255:99 chr1 109490457 . T C 26 . DP=12;VDB=0.0392;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=60;FQ=29;PV4=1,0.0052,1,1 GT:PL:GQ 0/1:56,0,102:59 chr1 109506029 . C G 110 . DP=56;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,12,16,13;MQ=59;FQ=113;PV4=0.79,1.1e-16,0.34,0.17 GT:PL:GQ 0/1:140,0,255:99 chr1 109524584 . C A 19.1 . DP=12;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,7,0,4;MQ=60;FQ=22;PV4=1,1.6e-06,1,0.32 GT:PL:GQ 0/1:49,0,143:52 chr1 109529322 . TA TAAA 214 . INDEL;DP=13;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,12;MQ=60;FQ=-73.5 GT:PL:GQ 1/1:255,39,0:75 chr1 109635398 . A G 68 . DP=28;VDB=0.0081;AF1=0.5;AC1=1;DP4=9,0,17,2;MQ=60;FQ=71;PV4=1,5.3e-11,1,0.26 GT:PL:GQ 0/1:98,0,117:99 chr1 109648870 . C G 38 . DP=4;VDB=0.0125;AF1=0.5003;AC1=1;DP4=0,1,0,3;MQ=60;FQ=4.13;PV4=1,0.3,1,0.38 GT:PL:GQ 0/1:68,0,29:32 chr1 109656946 . T C 209 . DP=34;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,12,6,8;MQ=59;FQ=212;PV4=1,0.37,1,0.34 GT:PL:GQ 0/1:239,0,255:99 chr1 109656981 . T C 73 . DP=29;VDB=0.0216;AF1=0.5;AC1=1;DP4=7,10,6,6;MQ=59;FQ=76;PV4=0.72,8.4e-13,1,1 GT:PL:GQ 0/1:103,0,255:99 chr1 109704361 . A G 50 . DP=7;VDB=0.0116;AF1=0.5;AC1=1;DP4=4,0,3,0;MQ=60;FQ=53;PV4=1,0.031,1,0.086 GT:PL:GQ 0/1:80,0,105:83 chr1 109704618 . A G 222 . DP=60;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,13,45;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 109714750 . T C 6.98 . DP=10;VDB=0.0216;AF1=0.4999;AC1=1;DP4=0,4,0,4;MQ=60;FQ=9.53;PV4=1,1.7e-05,1,1 GT:PL:GQ 0/1:36,0,89:37 chr1 109727475 . T C 3.98 . DP=2;VDB=0.0174;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr1 109734157 . T C 167 . DP=21;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,3,16;MQ=60;FQ=-84 GT:PL:GQ 1/1:200,57,0:99 chr1 109734541 . C T 131 . DP=30;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,26;MQ=60;FQ=-111 GT:PL:GQ 1/1:164,84,0:99 chr1 109735298 . T C 222 . DP=46;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,20,25;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 109735416 . A C 154 . DP=48;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,31;MQ=60;FQ=-165 GT:PL:GQ 1/1:187,138,0:99 chr1 109735504 . T C 145 . DP=10;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:178,27,0:51 chr1 109737063 . C T 222 . DP=17;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,12,4;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 109737090 . G A 222 . DP=32;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,19,12;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 109737132 . T C 222 . DP=43;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,18;MQ=60;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 109737172 . C T 222 . DP=37;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,19;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 109737314 . T C 86.5 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:119,12,0:21 chr1 109737320 . G A 9.49 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:41,9,0:12 chr1 109740548 . G T 77 . DP=26;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,3,7,6;MQ=60;FQ=80;PV4=0.41,4.4e-11,1,1 GT:PL:GQ 0/1:107,0,213:99 chr1 109742452 . C T 28 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:60,9,0:16 chr1 109742485 . G A 52.1 . DP=7;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:85,18,0:33 chr1 109743622 . C T 34 . DP=8;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,3,1,4;MQ=60;FQ=35.8;PV4=1,0.00025,1,1 GT:PL:GQ 0/1:64,0,69:66 chr1 109745618 . T C 175 . DP=41;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,34;MQ=59;FQ=-144 GT:PL:GQ 1/1:208,117,0:99 chr1 109771063 . T C 225 . DP=81;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,31,10,19;MQ=59;FQ=225;PV4=1,0.48,0.035,1 GT:PL:GQ 0/1:255,0,255:99 chr1 109771881 . G T 52.3 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:85,15,0:27 chr1 109779073 . G A 123 . DP=47;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,10,10,14;MQ=60;FQ=126;PV4=0.56,5.3e-15,1,0.32 GT:PL:GQ 0/1:153,0,255:99 chr1 109779556 . T A 222 . DP=33;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,28;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 109779621 . TC TCC 21.5 . INDEL;DP=12;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,9,0,3;MQ=58;FQ=24.5;PV4=1,1,0.041,0.42 GT:PL:GQ 0/1:59,0,130:62 chr1 109792735 . ACgccgccgccgccgc ACGCCgccgccgccgccgc 172 . INDEL;DP=5;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:212,15,0:27 chr1 109794252 . T C 222 . DP=208;VDB=0.0345;AF1=1;AC1=2;DP4=0,1,76,120;MQ=60;FQ=-282;PV4=1,1,1,0.26 GT:PL:GQ 1/1:255,255,0:99 chr1 109795026 . T C 222 . DP=104;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,44,55;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 109795608 . T C 164 . DP=86;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,41,37;MQ=60;FQ=-262 GT:PL:GQ 1/1:197,235,0:99 chr1 109804883 . C G 72 . DP=43;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,9,10,7;MQ=60;FQ=75;PV4=1,7.8e-13,1,0.45 GT:PL:GQ 0/1:102,0,255:99 chr1 109806442 . C A 60 . DP=29;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,14,0,15;MQ=59;FQ=63;PV4=1,1.7e-08,1,1 GT:PL:GQ 0/1:90,0,167:93 chr1 109807283 . A T 81 . DP=57;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,22,7,18;MQ=60;FQ=84;PV4=1,2e-26,1,1 GT:PL:GQ 0/1:111,0,255:99 chr1 109808329 . G A 169 . DP=90;VDB=0.0399;AF1=0.5;AC1=1;DP4=34,13,33,10;MQ=59;FQ=172;PV4=0.81,1.9e-17,1,0.5 GT:PL:GQ 0/1:199,0,255:99 chr1 109813510 . A T 68.3 . DP=7;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:101,15,0:27 chr1 109813719 . C T 222 . DP=41;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,17,23;MQ=60;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 109814880 . C T 179 . DP=96;VDB=0.0365;AF1=0.5;AC1=1;DP4=24,28,23,21;MQ=60;FQ=182;PV4=0.68,1.1e-23,0.45,1 GT:PL:GQ 0/1:209,0,255:99 chr1 109815252 . A G 225 . DP=50;VDB=0.0271;AF1=0.5;AC1=1;DP4=16,1,30,3;MQ=60;FQ=154;PV4=1,0.24,1,0.37 GT:PL:GQ 0/1:255,0,181:99 chr1 109816176 . A C 222 . DP=22;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,3,16;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr1 109836842 . C G 222 . DP=106;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,39,62;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 109838833 . T C 74 . DP=3;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:106,9,0:16 chr1 109838918 . C T 135 . DP=16;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,14,2;MQ=60;FQ=-75 GT:PL:GQ 1/1:168,48,0:93 chr1 109839392 . A G 222 . DP=46;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,37,4;MQ=60;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 109839433 . A G 222 . DP=77;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,49,25;MQ=59;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr1 109839954 . G C 68.1 . DP=6;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:101,18,0:33 chr1 109883576 . CG CATG 203 . INDEL;DP=25;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,2,21;MQ=58;FQ=-97.5 GT:PL:GQ 1/1:255,74,11:99 chr1 109884775 . T G 144 . DP=23;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,8,15;MQ=60;FQ=-96 GT:PL:GQ 1/1:177,69,0:99 chr1 109897103 . A G 190 . DP=54;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,30,20;MQ=60;FQ=-178 GT:PL:GQ 1/1:223,151,0:99 chr1 109958035 . T C 68.1 . DP=8;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:101,21,0:39 chr1 110009434 . A C 68.1 . DP=7;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,5,2;MQ=60;FQ=-48 GT:PL:GQ 1/1:101,21,0:39 chr1 110009654 . ACCCCCC ACCCCC 99.5 . INDEL;DP=15;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,6,8;MQ=60;FQ=-76.5 GT:PL:GQ 1/1:140,42,0:81 chr1 110018148 . C T 93 . DP=23;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,23,0;MQ=60;FQ=-96 GT:PL:GQ 1/1:126,69,0:99 chr1 110091282 . C T 3.54 . DP=4;VDB=0.0157;AF1=0.5;AC1=1;DP4=1,0,2,0;MQ=60;FQ=3.81;PV4=1,0.014,1,1 GT:PL:GQ 0/1:31,0,32:29 chr1 110091520 . C G 46 . DP=18;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,9,0,8;MQ=59;FQ=49;PV4=1,2.5e-06,1,0.32 GT:PL:GQ 0/1:76,0,178:79 chr1 110148974 . C T 108 . DP=99;VDB=0.0380;AF1=0.5;AC1=1;DP4=41,17,21,16;MQ=60;FQ=111;PV4=0.19,1.5e-33,0.11,1 GT:PL:GQ 0/1:138,0,255:99 chr1 110153198 . G A 4.13 . DP=18;VDB=0.0140;AF1=0.4998;AC1=1;DP4=1,9,0,7;MQ=59;FQ=6.2;PV4=1,3.2e-11,1,1 GT:PL:GQ 0/1:32,0,184:31 chr1 110155524 . T C 24 . DP=43;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,17,1,17;MQ=60;FQ=27;PV4=0.11,5.7e-25,1,1 GT:PL:GQ 0/1:54,0,255:57 chr1 110162918 . T C 225 . DP=52;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,17,12,11;MQ=60;FQ=225;PV4=0.41,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 110163076 . A G 36.3 . DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:69,15,0:27 chr1 110163879 . G A 225 . DP=37;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,10,9,6;MQ=60;FQ=225;PV4=0.74,0.31,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 110164963 . C T 50 . DP=24;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,10,2,6;MQ=60;FQ=53;PV4=1,3.1e-07,1,1 GT:PL:GQ 0/1:80,0,253:83 chr1 110165001 . T A 106 . DP=12;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,5,0,7;MQ=58;FQ=81;PV4=1,0.4,0.21,1 GT:PL:GQ 0/1:136,0,108:99 chr1 110168888 . C G 222 . DP=76;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,23,49;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr1 110169957 . A G 222 . DP=77;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,49,19;MQ=59;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr1 110170896 . T C 222 . DP=56;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,39,16;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 110171705 . A C 165 . DP=24;VDB=0.0399;AF1=1;AC1=2;DP4=1,0,18,5;MQ=59;FQ=-70;PV4=1,0.00076,1,0.19 GT:PL:GQ 1/1:198,43,0:83 chr1 110172346 . TGGGGG TGGGGGG 66.5 . INDEL;DP=13;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-73.5 GT:PL:GQ 1/1:107,39,0:75 chr1 110172362 . C T 56 . DP=16;VDB=0.0042;AF1=0.5;AC1=1;DP4=7,1,8,0;MQ=60;FQ=59;PV4=1,6e-08,1,1 GT:PL:GQ 0/1:86,0,146:89 chr1 110199172 . Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg,CTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 14.6 . INDEL;DP=17;VDB=0.0118;AF1=0.502;AC1=1;DP4=0,1,1,1;MQ=52;FQ=-13.7;PV4=1,1,1,1 GT:PL:GQ 0/1:75,23,44,31,0,52:24 chr1 110201580 . C T 222 . DP=132;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,64,62;MQ=56;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 110201699 . T C 59 . DP=14;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,2,6;MQ=48;FQ=-51 GT:PL:GQ 1/1:92,24,0:45 chr1 110201809 . G T 222 . DP=41;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,31,8;MQ=59;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 110201812 . A G 222 . DP=42;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,32,8;MQ=59;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 110210780 . C G 114 . DP=12;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-63 GT:PL:GQ 1/1:147,36,0:69 chr1 110215943 . G T 28 . DP=7;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=60;FQ=24.1;PV4=1,0.0061,1,1 GT:PL:GQ 0/1:58,0,52:54 chr1 110251115 . G A 225 . DP=45;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,16,9,8;MQ=58;FQ=225;PV4=0.55,1,1,0.49 GT:PL:GQ 0/1:255,0,255:99 chr1 110252010 . T C 179 . DP=51;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,22,25;MQ=60;FQ=-168 GT:PL:GQ 1/1:212,141,0:99 chr1 110256075 . A G 44 . DP=14;VDB=0.0053;AF1=0.5;AC1=1;DP4=5,0,8,0;MQ=58;FQ=47;PV4=1,1.9e-10,0.24,1 GT:PL:GQ 0/1:74,0,111:77 chr1 110256220 . A C 183 . DP=93;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,26,30,16;MQ=58;FQ=186;PV4=0.034,3.1e-12,0.48,1 GT:PL:GQ 0/1:213,0,255:99 chr1 110257831 . T C 59 . DP=44;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,21,5,12;MQ=56;FQ=62;PV4=0.72,7.1e-19,7.5e-05,1 GT:PL:GQ 0/1:89,0,255:92 chr1 110257947 . A C 116 . DP=107;VDB=0.0392;AF1=0.5;AC1=1;DP4=38,18,32,14;MQ=59;FQ=119;PV4=1,1.3e-39,0.33,1 GT:PL:GQ 0/1:146,0,255:99 chr1 110280252 . ATCCTC ATC 217 . INDEL;DP=92;VDB=0.0365;AF1=0.5;AC1=1;DP4=27,22,16,27;MQ=58;FQ=217;PV4=0.098,0.081,0.032,1 GT:PL:GQ 0/1:255,0,255:99 chr1 110281941 . G A 14.2 . DP=13;VDB=0.0099;AF1=0.5;AC1=1;DP4=5,3,5,0;MQ=60;FQ=17.1;PV4=0.23,0.00087,1,0.015 GT:PL:GQ 0/1:44,0,182:47 chr1 110282511 . A G 83 . DP=32;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,10,8,5;MQ=60;FQ=86;PV4=0.49,1.6e-11,1,1 GT:PL:GQ 0/1:113,0,255:99 chr1 110282891 . T G 225 . DP=114;VDB=0.0380;AF1=0.5;AC1=1;DP4=30,31,30,15;MQ=60;FQ=225;PV4=0.079,1,0.12,1 GT:PL:GQ 0/1:255,0,255:99 chr1 110282972 . G T 225 . DP=68;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,24,5,28;MQ=60;FQ=225;PV4=1,0.41,0.18,1 GT:PL:GQ 0/1:255,0,255:99 chr1 110293310 . C T 163 . DP=79;VDB=0.0392;AF1=0.5;AC1=1;DP4=24,19,19,15;MQ=60;FQ=166;PV4=1,8.7e-22,1,0.12 GT:PL:GQ 0/1:193,0,255:99 chr1 110294577 . A G 90 . DP=28;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,3,8,3;MQ=60;FQ=93;PV4=0.66,3.2e-05,1,0.23 GT:PL:GQ 0/1:120,0,225:99 chr1 110295643 . G T 61 . DP=30;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,1,17,1;MQ=60;FQ=64;PV4=1,9.8e-14,1,1 GT:PL:GQ 0/1:91,0,168:94 chr1 110295772 . T C 182 . DP=61;VDB=0.0244;AF1=0.5;AC1=1;DP4=12,14,16,19;MQ=60;FQ=185;PV4=1,7.2e-22,1,1 GT:PL:GQ 0/1:212,0,255:99 chr1 110295890 . C G 123 . DP=22;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,10,0,10;MQ=60;FQ=126;PV4=0.48,1,1,1 GT:PL:GQ 0/1:153,0,194:99 chr1 110299691 . G A 123 . DP=78;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,27,20,13;MQ=59;FQ=126;PV4=0.063,9.8e-34,0.43,0.062 GT:PL:GQ 0/1:153,0,255:99 chr1 110300277 . C T 4.13 . DP=9;VDB=0.0053;AF1=0.4998;AC1=1;DP4=0,3,0,5;MQ=60;FQ=6.2;PV4=1,3e-06,1,1 GT:PL:GQ 0/1:32,0,77:31 chr1 110300504 . A G 139 . DP=85;VDB=0.0365;AF1=0.5;AC1=1;DP4=27,26,14,18;MQ=60;FQ=142;PV4=0.65,7.1e-16,1,1 GT:PL:GQ 0/1:169,0,255:99 chr1 110301260 . C T 48 . DP=25;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,6,1,15;MQ=60;FQ=51;PV4=0.25,3.7e-11,1,1 GT:PL:GQ 0/1:78,0,151:81 chr1 110301766 . Agtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg Agtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg,Agtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg,Agtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 46 . INDEL;DP=15;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,1;MQ=47;FQ=-46.5 GT:PL:GQ 1/1:130,56,44,81,0,78,112,31,60,109:21 chr1 110456866 . C A 114 . DP=35;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,5,11,10;MQ=60;FQ=117;PV4=1,1e-12,1,0.31 GT:PL:GQ 0/1:144,0,204:99 chr1 110458234 . G A 225 . DP=90;VDB=0.0322;AF1=0.5;AC1=1;DP4=25,19,30,14;MQ=60;FQ=225;PV4=0.38,1,1,0.29 GT:PL:GQ 0/1:255,0,255:99 chr1 110466338 . C A 171 . DP=130;VDB=0.0400;AF1=0.5;AC1=1;DP4=36,36,29,26;MQ=60;FQ=174;PV4=0.86,1.7e-30,0.13,0.27 GT:PL:GQ 0/1:201,0,255:99 chr1 110466466 . T C 186 . DP=78;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,20,10,35;MQ=60;FQ=189;PV4=0.58,1.4e-11,0.22,1 GT:PL:GQ 0/1:216,0,255:99 chr1 110466709 . T C 199 . DP=97;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,29,64;MQ=60;FQ=-282 GT:PL:GQ 1/1:232,255,0:99 chr1 110466810 . C A 119 . DP=18;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,9,0,9;MQ=60;FQ=117;PV4=1,1,1,0.16 GT:PL:GQ 0/1:149,0,146:99 chr1 110467745 . A G 222 . DP=20;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,14,6;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr1 110558276 . A AC 142 . INDEL;DP=19;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,17;MQ=60;FQ=-91.5 GT:PL:GQ 1/1:183,57,0:99 chr1 110603286 . A G 22 . DP=12;VDB=0.0000;AF1=0.5;AC1=1;DP4=5,0,7,0;MQ=49;FQ=25;PV4=1,8.9e-08,0.0055,1 GT:PL:GQ 0/1:52,0,102:55 chr1 110709719 . T C 94 . DP=48;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,3;MQ=60;FQ=-57 GT:PL:GQ 1/1:127,30,0:57 chr1 110709720 . G A 92 . DP=47;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,4;MQ=60;FQ=-57 GT:PL:GQ 1/1:125,30,0:57 chr1 110716511 . C T 102 . DP=10;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,6,2;MQ=54;FQ=-51 GT:PL:GQ 1/1:135,24,0:45 chr1 110738296 . G A 222 . DP=61;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,41,16;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr1 110740273 . G T 43.1 . DP=6;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:76,18,0:33 chr1 110740688 . C T 202 . DP=72;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,58,14;MQ=60;FQ=-244 GT:PL:GQ 1/1:235,217,0:99 chr1 110765535 . C G 50.1 . DP=8;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:83,21,0:39 chr1 110882444 . A G 141 . DP=42;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,12,11,6;MQ=60;FQ=144;PV4=0.53,3e-06,1,0.34 GT:PL:GQ 0/1:171,0,255:99 chr1 110949720 . C T 166 . DP=29;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,11,3,9;MQ=59;FQ=169;PV4=0.69,0.0098,0.12,0.44 GT:PL:GQ 0/1:196,0,255:99 chr1 110950439 . C T 153 . DP=77;VDB=0.0244;AF1=0.5;AC1=1;DP4=20,24,13,20;MQ=60;FQ=156;PV4=0.65,1.9e-15,0.13,1 GT:PL:GQ 0/1:183,0,255:99 chr1 110998854 . G A 149 . DP=51;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,7,17,7;MQ=59;FQ=152;PV4=1,3.4e-13,0.073,1 GT:PL:GQ 0/1:179,0,255:99 chr1 111136611 . G A 223 . DP=51;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,16,5,18;MQ=60;FQ=224;PV4=0.52,0.0033,1,1 GT:PL:GQ 0/1:253,0,255:99 chr1 111144526 . T G 10.2 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:41,6,0:8 chr1 111144661 . A G 225 . DP=26;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,4,10,8;MQ=60;FQ=128;PV4=1,0.32,1,0.17 GT:PL:GQ 0/1:255,0,155:99 chr1 111437129 . A C 52.3 . DP=5;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:85,15,0:27 chr1 111441829 . C T 184 . DP=62;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,30,29;MQ=59;FQ=-205 GT:PL:GQ 1/1:217,178,0:99 chr1 111732003 . T A 19.1 . DP=12;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,6,1,3;MQ=60;FQ=22;PV4=1,0.00094,1,0.43 GT:PL:GQ 0/1:49,0,154:52 chr1 111737183 . C T 22 . DP=5;VDB=0.0263;AF1=0.5013;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-5.45;PV4=1,0.017,1,0.27 GT:PL:GQ 0/1:52,0,23:26 chr1 111770423 . T G 167 . DP=22;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,9,12;MQ=60;FQ=-90 GT:PL:GQ 1/1:200,63,0:99 chr1 111778241 . C T 75 . DP=9;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:108,27,0:51 chr1 111778824 . T C 131 . DP=11;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,3,8;MQ=58;FQ=-60 GT:PL:GQ 1/1:164,33,0:63 chr1 111783982 . C T 222 . DP=41;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,31,9;MQ=60;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 111783996 . A G 219 . DP=48;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,32,12;MQ=60;FQ=-159 GT:PL:GQ 1/1:252,132,0:99 chr1 111784148 . T G 222 . DP=21;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,3,18;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 111784816 . G A 157 . DP=22;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,8;MQ=60;FQ=-87 GT:PL:GQ 1/1:190,60,0:99 chr1 111785930 . T C 81 . DP=13;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:114,39,0:75 chr1 111825883 . T C 43 . DP=10;VDB=0.0002;AF1=0.5;AC1=1;DP4=1,3,3,3;MQ=54;FQ=46;PV4=0.57,2.5e-05,0.4,0.43 GT:PL:GQ 0/1:73,0,95:76 chr1 111826023 . C G 109 . DP=46;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,17,5,15;MQ=31;FQ=112;PV4=0.74,2.4e-21,0.034,1 GT:PL:GQ 0/1:139,0,251:99 chr1 111833441 . G A 225 . DP=42;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,6,12,7;MQ=60;FQ=225;PV4=0.52,0.19,1,0.46 GT:PL:GQ 0/1:255,0,255:99 chr1 111833488 . cctc cCTctc 217 . INDEL;DP=44;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,19,8,10;MQ=60;FQ=217;PV4=0.2,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 111833517 . G A 76 . DP=34;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,19,4,7;MQ=60;FQ=79;PV4=0.19,4.1e-07,1,1 GT:PL:GQ 0/1:106,0,254:99 chr1 111854207 . T C 126 . DP=68;VDB=0.0140;AF1=0.5;AC1=1;DP4=30,4,27,6;MQ=60;FQ=129;PV4=0.51,1.6e-20,1,1 GT:PL:GQ 0/1:156,0,255:99 chr1 111854223 . C T 225 . DP=84;VDB=0.0244;AF1=0.5;AC1=1;DP4=35,8,32,9;MQ=60;FQ=225;PV4=0.79,0.48,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr1 111857087 . C T 225 . DP=39;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,9,15,4;MQ=58;FQ=225;PV4=0.18,0.46,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 111857154 . T C 113 . DP=47;VDB=0.0393;AF1=0.5;AC1=1;DP4=16,8,14,8;MQ=57;FQ=116;PV4=1,4.6e-16,1,0.37 GT:PL:GQ 0/1:143,0,255:99 chr1 111858444 . C T 161 . DP=100;VDB=0.0322;AF1=0.5;AC1=1;DP4=29,25,32,13;MQ=54;FQ=164;PV4=0.098,2.4e-34,4e-12,1 GT:PL:GQ 0/1:191,0,255:99 chr1 111858499 . A G 225 . DP=70;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,24,10,30;MQ=49;FQ=225;PV4=0.56,0.082,9.3e-13,0.29 GT:PL:GQ 0/1:255,0,255:99 chr1 111858589 . G T 73 . DP=12;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,4,0,8;MQ=42;FQ=56;PV4=1,1,0,0.48 GT:PL:GQ 0/1:103,0,83:86 chr1 111858603 . G T 45 . DP=8;VDB=0.0001;AF1=0.5;AC1=1;DP4=0,2,0,6;MQ=39;FQ=10.4;PV4=1,0.00082,0,0.044 GT:PL:GQ 0/1:75,0,37:40 chr1 111861714 . T A 55 . DP=61;VDB=0.0244;AF1=0.5;AC1=1;DP4=26,7,22,3;MQ=60;FQ=58;PV4=0.49,2.4e-31,1,0.38 GT:PL:GQ 0/1:85,0,255:88 chr1 111861841 . A G 225 . DP=72;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,19,12,27;MQ=59;FQ=225;PV4=0.46,0.23,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 111861974 . T C 92 . DP=35;VDB=0.0373;AF1=0.5;AC1=1;DP4=6,9,3,13;MQ=59;FQ=95;PV4=0.25,5.4e-13,1,0.31 GT:PL:GQ 0/1:122,0,255:99 chr1 111862952 . T G 142 . DP=38;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,8,14,6;MQ=59;FQ=145;PV4=0.5,2e-08,0.17,0.35 GT:PL:GQ 0/1:172,0,255:99 chr1 112020222 . GCCCCCC GCCCCC 9.01 . INDEL;DP=3;VDB=0.0156;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:48,9,0:12 chr1 112020238 . A C 108 . DP=8;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,6,2;MQ=57;FQ=-51 GT:PL:GQ 1/1:141,24,0:45 chr1 112028577 . A T 122 . DP=20;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,9,0,11;MQ=60;FQ=122;PV4=1,0.011,1,1 GT:PL:GQ 0/1:152,0,152:99 chr1 112029193 . A G 43 . DP=11;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,0,4,1;MQ=60;FQ=46;PV4=1,0.0036,1,0.0053 GT:PL:GQ 0/1:73,0,104:76 chr1 112029325 . A G 219 . DP=19;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,4,5,8;MQ=60;FQ=101;PV4=1,0.41,1,0.077 GT:PL:GQ 0/1:249,0,128:99 chr1 112032347 . G A 196 . DP=75;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,24,19,23;MQ=60;FQ=199;PV4=0.091,1.5e-10,1,0.34 GT:PL:GQ 0/1:226,0,255:99 chr1 112033456 . GAAA GAAAA 217 . INDEL;DP=45;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,16,7,15;MQ=60;FQ=182;PV4=0.74,1,1,0.2 GT:PL:GQ 0/1:255,0,217:99 chr1 112033515 . T C 120 . DP=21;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,7,1,12;MQ=60;FQ=108;PV4=1,0.052,1,1 GT:PL:GQ 0/1:150,0,135:99 chr1 112033519 . A G 128 . DP=20;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,6,1,12;MQ=60;FQ=93;PV4=1,0.11,1,1 GT:PL:GQ 0/1:158,0,120:99 chr1 112042632 . A G 92 . DP=95;VDB=0.0271;AF1=0.5;AC1=1;DP4=27,22,27,16;MQ=60;FQ=95;PV4=0.53,2.1e-36,0.14,1 GT:PL:GQ 0/1:122,0,255:99 chr1 112106342 . C T 222 . DP=48;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,35,10;MQ=60;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 112106444 . G A 222 . DP=45;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,15,28;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 112251983 . C G 222 . DP=119;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,94;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 112269872 . G A 212 . DP=94;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,64,28;MQ=59;FQ=-282 GT:PL:GQ 1/1:245,255,0:99 chr1 112525142 . C T 170 . DP=81;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,22,11,29;MQ=60;FQ=173;PV4=0.33,1.6e-22,1,1 GT:PL:GQ 0/1:200,0,255:99 chr1 112533728 . G A 225 . DP=34;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,2,13,9;MQ=60;FQ=161;PV4=0.25,0.02,1,1 GT:PL:GQ 0/1:255,0,188:99 chr1 112991698 . T C 134 . DP=29;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,2,10,10;MQ=60;FQ=118;PV4=0.23,1.5e-08,1,1 GT:PL:GQ 0/1:164,0,145:99 chr1 112991862 . G T 15.1 . DP=11;VDB=0.0219;AF1=0.5;AC1=1;DP4=1,6,0,4;MQ=60;FQ=18.1;PV4=1,2.4e-05,1,1 GT:PL:GQ 0/1:45,0,160:48 chr1 112999227 . G A 170 . DP=84;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,32,47;MQ=60;FQ=-265 GT:PL:GQ 1/1:203,238,0:99 chr1 113063125 . A G 164 . DP=56;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,14,15,15;MQ=59;FQ=167;PV4=0.79,3.7e-15,1,0.36 GT:PL:GQ 0/1:194,0,255:99 chr1 113068577 . C T 225 . DP=82;VDB=0.0365;AF1=0.5;AC1=1;DP4=32,10,27,12;MQ=60;FQ=225;PV4=0.62,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 113083439 . C T 34 . DP=24;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,3,9,2;MQ=60;FQ=37;PV4=1,6.1e-13,1,1 GT:PL:GQ 0/1:64,0,222:67 chr1 113140583 . T C 135 . DP=32;VDB=0.0081;AF1=0.5;AC1=1;DP4=15,3,14,0;MQ=59;FQ=138;PV4=0.24,0.27,0.13,1 GT:PL:GQ 0/1:165,0,255:99 chr1 113202417 . G A 80 . DP=23;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,8,2,3;MQ=60;FQ=83;PV4=1,1,1,1 GT:PL:GQ 0/1:110,0,255:99 chr1 113234456 . G A 225 . DP=73;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,20,14,19;MQ=59;FQ=225;PV4=1,0.19,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 113236681 . C T 177 . DP=28;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,4,8,5;MQ=60;FQ=180;PV4=1,0.00098,1,0.18 GT:PL:GQ 0/1:207,0,225:99 chr1 113237171 . A G 42 . DP=34;VDB=0.0118;AF1=0.5;AC1=1;DP4=13,9,10,1;MQ=60;FQ=45;PV4=0.11,3.4e-11,1,1 GT:PL:GQ 0/1:72,0,255:75 chr1 113239382 . G A 176 . DP=41;VDB=0.0398;AF1=0.5;AC1=1;DP4=8,8,7,18;MQ=60;FQ=179;PV4=0.19,4.8e-12,1,0.059 GT:PL:GQ 0/1:206,0,255:99 chr1 113239478 . T C 185 . DP=13;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:218,33,0:63 chr1 113240790 . G T 19.1 . DP=10;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,3,0,7;MQ=60;FQ=22;PV4=1,8.6e-09,1,0.1 GT:PL:GQ 0/1:49,0,72:52 chr1 113241052 . T C 121 . DP=59;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,23,6,21;MQ=59;FQ=124;PV4=1,8.3e-14,0.24,1 GT:PL:GQ 0/1:151,0,255:99 chr1 113242488 . C T 152 . DP=94;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,22,18,29;MQ=59;FQ=155;PV4=0.29,3.5e-27,1,0.26 GT:PL:GQ 0/1:182,0,255:99 chr1 113243048 . C T 186 . DP=70;VDB=0.0393;AF1=0.5;AC1=1;DP4=18,18,12,22;MQ=60;FQ=189;PV4=0.24,1.4e-13,1,1 GT:PL:GQ 0/1:216,0,255:99 chr1 113244433 . T C 98 . DP=18;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,2,14;MQ=60;FQ=-75 GT:PL:GQ 1/1:131,48,0:93 chr1 113246229 . T A 53 . DP=10;VDB=0.0324;AF1=0.5;AC1=1;DP4=5,1,3,1;MQ=60;FQ=56;PV4=1,1,1,1 GT:PL:GQ 0/1:83,0,115:86 chr1 113248365 . A G 3.54 . DP=4;VDB=0.0030;AF1=0.5;AC1=1;DP4=0,1,0,2;MQ=60;FQ=3.54;PV4=1,0.015,1,0.097 GT:PL:GQ 0/1:31,0,31:29 chr1 113255389 . C T 163 . DP=8;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,6,2;MQ=57;FQ=-51 GT:PL:GQ 1/1:196,24,0:45 chr1 113456546 . A T 157 . DP=99;VDB=0.0298;AF1=0.5;AC1=1;DP4=40,14,29,13;MQ=59;FQ=160;PV4=0.65,2.1e-26,0.21,1 GT:PL:GQ 0/1:187,0,255:99 chr1 113636924 . T C 80 . DP=9;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:113,27,0:51 chr1 113642815 . G C 116 . DP=16;VDB=0.0373;AF1=0.5;AC1=1;DP4=4,4,5,2;MQ=60;FQ=119;PV4=0.61,0.0067,1,0.18 GT:PL:GQ 0/1:146,0,201:99 chr1 113657092 . A C 166 . DP=48;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,37,9;MQ=60;FQ=-165 GT:PL:GQ 1/1:199,138,0:99 chr1 113658887 . G A 150 . DP=22;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,3;MQ=60;FQ=-90 GT:PL:GQ 1/1:183,63,0:99 chr1 113659065 . ACTCT ACT 214 . INDEL;DP=60;VDB=0.0271;AF1=1;AC1=2;DP4=0,1,22,35;MQ=59;FQ=-180;PV4=1,0.063,1,0.46 GT:PL:GQ 1/1:255,145,0:99 chr1 114189067 . G T 100 . DP=22;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,3,9,3;MQ=60;FQ=103;PV4=1,1.5e-08,1,0.065 GT:PL:GQ 0/1:130,0,210:99 chr1 114214292 . A G 99 . DP=42;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,5,17,2;MQ=59;FQ=102;PV4=0.41,9.8e-11,0.47,1 GT:PL:GQ 0/1:129,0,255:99 chr1 114215194 . A G 5.46 . DP=12;VDB=0.0057;AF1=0.4999;AC1=1;DP4=10,0,1,1;MQ=60;FQ=7.8;PV4=0.17,0.24,1,0.3 GT:PL:GQ 0/1:34,0,161:34 chr1 114240319 . TA TAA 217 . INDEL;DP=96;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,24,24,30;MQ=60;FQ=217;PV4=0.68,1,1,0.39 GT:PL:GQ 0/1:255,0,255:99 chr1 114249382 . C T 54 . DP=37;VDB=0.0393;AF1=0.5;AC1=1;DP4=0,17,1,18;MQ=59;FQ=57;PV4=1,4.7e-18,0.18,0.14 GT:PL:GQ 0/1:84,0,176:87 chr1 114255828 . T C 107 . DP=46;VDB=0.0244;AF1=0.5;AC1=1;DP4=15,1,27,3;MQ=59;FQ=110;PV4=1,5.7e-18,0.24,1 GT:PL:GQ 0/1:137,0,186:99 chr1 114267347 . C T 225 . DP=46;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,5,19,3;MQ=60;FQ=225;PV4=0.7,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 114301335 . C T 140 . DP=25;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,3,10,7;MQ=60;FQ=136;PV4=1,3e-12,1,1 GT:PL:GQ 0/1:170,0,164:99 chr1 114354654 . T C 51 . DP=20;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,5,2,4;MQ=60;FQ=54;PV4=0.62,1.1e-05,1,0.17 GT:PL:GQ 0/1:81,0,253:84 chr1 114354942 . T G 225 . DP=103;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,33,18,32;MQ=60;FQ=225;PV4=1,1,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr1 114372528 . T G 74 . DP=22;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,0,11,2;MQ=60;FQ=77;PV4=0.5,2.8e-09,1,0.44 GT:PL:GQ 0/1:104,0,136:99 chr1 114377093 . A G 41 . DP=41;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,16,1,20;MQ=59;FQ=44;PV4=0.18,1.2e-25,0.082,1 GT:PL:GQ 0/1:71,0,255:74 chr1 114377568 . A G 222 . DP=40;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,26;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 114424601 . C T,G 164 . DP=41;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,14,25;MQ=60;FQ=-141 GT:PL:GQ 1/1:197,114,0,196,97,193:99 chr1 114443035 . C G 167 . DP=13;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,13;MQ=58;FQ=-66 GT:PL:GQ 1/1:200,39,0:75 chr1 114443899 . G A 225 . DP=128;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,20,46,26;MQ=60;FQ=225;PV4=0.56,0.048,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 114448389 . C T 182 . DP=124;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,51,15,39;MQ=60;FQ=185;PV4=0.84,1.1e-22,1,1 GT:PL:GQ 0/1:212,0,255:99 chr1 114449662 . T C 225 . DP=128;VDB=0.0322;AF1=0.5;AC1=1;DP4=40,22,43,21;MQ=59;FQ=225;PV4=0.85,1,1,0.18 GT:PL:GQ 0/1:255,0,255:99 chr1 114483908 . A G 179 . DP=109;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,31,22,34;MQ=60;FQ=182;PV4=1,9.4e-39,0.17,0.29 GT:PL:GQ 0/1:209,0,255:99 chr1 114497485 . G C 95 . DP=12;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=60;FQ=81.9;PV4=1,0.49,1,1 GT:PL:GQ 0/1:125,0,109:99 chr1 114512939 . A T 94 . DP=10;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,4,0,6;MQ=60;FQ=55;PV4=1,1,1,1 GT:PL:GQ 0/1:124,0,82:85 chr1 114515717 . G A 225 . DP=102;VDB=0.0399;AF1=0.5;AC1=1;DP4=30,26,21,24;MQ=60;FQ=225;PV4=0.55,0.19,0.44,0.15 GT:PL:GQ 0/1:255,0,255:99 chr1 114523465 . A G 90 . DP=8;VDB=0.0008;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=57;FQ=21;PV4=1,1,0.29,0.38 GT:PL:GQ 0/1:120,0,48:51 chr1 114641685 . A G 212 . DP=36;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,31,5;MQ=60;FQ=-135 GT:PL:GQ 1/1:245,108,0:99 chr1 114940632 . CAAAAAAAAAAAA CAAAAAAAAAAA 5.08 . INDEL;DP=18;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-67.5 GT:PL:GQ 1/1:44,33,0:33 chr1 114948281 . A G 222 . DP=162;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,76,82;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 114976224 . A C 58 . DP=18;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,4,7,1;MQ=59;FQ=61;PV4=0.31,6.3e-06,1,0.15 GT:PL:GQ 0/1:88,0,223:91 chr1 115144304 . C T 45 . DP=7;VDB=0.0020;AF1=0.5;AC1=1;DP4=2,2,0,3;MQ=60;FQ=48;PV4=0.43,0.37,1,1 GT:PL:GQ 0/1:75,0,119:78 chr1 115144703 . A G 222 . DP=194;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,126,58;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 115168600 . A T 124 . DP=81;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,32,6,33;MQ=60;FQ=127;PV4=0.57,1.2e-33,1,0.18 GT:PL:GQ 0/1:154,0,255:99 chr1 115256669 . G A 46 . DP=6;VDB=0.0149;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=56;FQ=46.9;PV4=1,1,0.19,1 GT:PL:GQ 0/1:76,0,78:77 chr1 115266446 . T C 225 . DP=48;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,6,20,3;MQ=59;FQ=225;PV4=0.46,0.44,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 115284056 . G T 135 . DP=68;VDB=0.0298;AF1=0.5;AC1=1;DP4=28,11,22,7;MQ=60;FQ=138;PV4=0.79,4.4e-18,1,1 GT:PL:GQ 0/1:165,0,255:99 chr1 115398044 . GCCCCCCC GCCCCCC 54.5 . INDEL;DP=16;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,12,4;MQ=60;FQ=-82.5 GT:PL:GQ 1/1:95,48,0:92 chr1 115399940 . T G 44 . DP=14;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,6,0,7;MQ=57;FQ=47;PV4=1,8e-08,0.46,1 GT:PL:GQ 0/1:74,0,125:77 chr1 115401136 . G A 10.2 . DP=2;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:41,6,0:8 chr1 115420905 . T C 96 . DP=25;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,9,3,12;MQ=59;FQ=99;PV4=0.63,9.3e-10,0.21,0.35 GT:PL:GQ 0/1:126,0,173:99 chr1 115437986 . G A 132 . DP=25;VDB=0.0384;AF1=0.5;AC1=1;DP4=10,6,5,3;MQ=60;FQ=135;PV4=1,0.26,1,1 GT:PL:GQ 0/1:162,0,255:99 chr1 115576023 . A G 222 . DP=90;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,71,15;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 115576482 . C G 24 . DP=8;VDB=0.0019;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=60;FQ=27;PV4=1,3.5e-05,1,0.34 GT:PL:GQ 0/1:54,0,79:57 chr1 115601615 . A G 213 . DP=60;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,10,50;MQ=60;FQ=-208 GT:PL:GQ 1/1:246,181,0:99 chr1 115631924 . C T 80.1 . DP=10;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,5,2;MQ=57;FQ=-48 GT:PL:GQ 1/1:113,21,0:39 chr1 115829313 . G A 138 . DP=112;VDB=0.0392;AF1=0.5;AC1=1;DP4=33,28,33,12;MQ=60;FQ=141;PV4=0.067,3.4e-28,1,0.2 GT:PL:GQ 0/1:168,0,255:99 chr1 116283343 . A G 222 . DP=58;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,36,19;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 116283526 . G A 157 . DP=21;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,4,17;MQ=60;FQ=-90 GT:PL:GQ 1/1:190,63,0:99 chr1 116287682 . T C 84.3 . DP=5;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:117,15,0:27 chr1 116311198 . T C 99 . DP=13;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-63 GT:PL:GQ 1/1:132,36,0:69 chr1 116534852 . C T 167 . DP=52;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,17,7,18;MQ=60;FQ=170;PV4=0.76,1.2e-14,1,0.49 GT:PL:GQ 0/1:197,0,255:99 chr1 116534952 . G T 18.1 . DP=12;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,5,0,5;MQ=60;FQ=21;PV4=1,2.1e-06,1,1 GT:PL:GQ 0/1:48,0,113:51 chr1 116534953 . C T 14.2 . DP=11;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,5,0,5;MQ=60;FQ=17.1;PV4=1,1.8e-06,1,1 GT:PL:GQ 0/1:44,0,112:47 chr1 116569530 . G C 153 . DP=10;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-48 GT:PL:GQ 1/1:186,21,0:39 chr1 116577981 . G A 175 . DP=20;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,17;MQ=60;FQ=-78 GT:PL:GQ 1/1:208,51,0:99 chr1 116609126 . TCCCC TCCC 207 . INDEL;DP=49;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,31,17;MQ=60;FQ=-179 GT:PL:GQ 1/1:248,144,0:99 chr1 116655272 . C T 177 . DP=88;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,12,34,18;MQ=59;FQ=180;PV4=1,4.4e-31,0.41,1 GT:PL:GQ 0/1:207,0,255:99 chr1 117122285 . gtc gTCCtc 214 . INDEL;DP=74;VDB=0.0393;AF1=1;AC1=2;DP4=0,1,7,36;MQ=59;FQ=-107;PV4=1,0.49,0.42,0.27 GT:PL:GQ 1/1:255,72,0:99 chr1 117142531 . G A 96 . DP=15;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,14,1;MQ=60;FQ=-72 GT:PL:GQ 1/1:129,45,0:87 chr1 117236913 . T C 129 . DP=68;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,24,6,29;MQ=60;FQ=132;PV4=1,6.3e-21,0.18,1 GT:PL:GQ 0/1:159,0,255:99 chr1 117236970 . G C 89 . DP=20;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,20;MQ=60;FQ=-87 GT:PL:GQ 1/1:122,60,0:99 chr1 117487392 . C T 20 . DP=11;VDB=0.0276;AF1=0.5;AC1=1;DP4=7,0,4,0;MQ=60;FQ=23;PV4=1,9.9e-06,1,1 GT:PL:GQ 0/1:50,0,143:53 chr1 117509981 . G A 85 . DP=37;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,17,2,14;MQ=59;FQ=88;PV4=1,1.2e-11,0.13,0.46 GT:PL:GQ 0/1:115,0,255:99 chr1 117509987 . C T 65 . DP=33;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,16,1,13;MQ=59;FQ=68;PV4=0.62,2.6e-13,0.13,1 GT:PL:GQ 0/1:95,0,255:98 chr1 117510061 . C T 30 . DP=5;VDB=0.0049;AF1=0.5008;AC1=1;DP4=0,1,1,2;MQ=60;FQ=-4.12;PV4=1,0.089,1,1 GT:PL:GQ 0/1:60,0,25:28 chr1 117527645 . GTCTTCTTCTT GTCTTCTT 217 . INDEL;DP=66;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,28,4,16;MQ=58;FQ=217;PV4=1,6.1e-06,0.0041,1 GT:PL:GQ 0/1:255,0,255:99 chr1 117529458 . G A 225 . DP=63;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,11,19,9;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 117554421 . A G 150 . DP=43;VDB=0.0398;AF1=0.5;AC1=1;DP4=15,8,11,9;MQ=60;FQ=153;PV4=0.55,1.1e-15,1,1 GT:PL:GQ 0/1:180,0,255:99 chr1 117559726 . A G 222 . DP=79;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,44,32;MQ=59;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr1 117576389 . T C 40 . DP=17;VDB=0.0099;AF1=0.5;AC1=1;DP4=7,1,8,1;MQ=60;FQ=43;PV4=1,3e-11,1,0.1 GT:PL:GQ 0/1:70,0,169:73 chr1 117602960 . C A 171 . DP=62;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,46,14;MQ=60;FQ=-208 GT:PL:GQ 1/1:204,181,0:99 chr1 117603188 . G T 62 . DP=12;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,10;MQ=58;FQ=-57 GT:PL:GQ 1/1:95,30,0:57 chr1 117617705 . A G 168 . DP=113;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,45,62;MQ=60;FQ=-282 GT:PL:GQ 1/1:201,255,0:99 chr1 117618067 . C T 222 . DP=84;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,59;MQ=59;FQ=-274 GT:PL:GQ 1/1:255,247,0:99 chr1 117618722 . T C 145 . DP=8;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:178,24,0:45 chr1 117622286 . A G 222 . DP=87;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,24,60;MQ=59;FQ=-280 GT:PL:GQ 1/1:255,253,0:99 chr1 117631391 . T C 222 . DP=47;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,33,13;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 117660608 . C T 26 . DP=3;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:58,9,0:16 chr1 117660754 . C T 225 . DP=70;VDB=0.0322;AF1=0.5;AC1=1;DP4=24,9,27,7;MQ=59;FQ=225;PV4=0.58,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 117690272 . G A 172 . DP=37;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,31,6;MQ=59;FQ=-138 GT:PL:GQ 1/1:205,111,0:99 chr1 117715026 . C T 114 . DP=56;VDB=0.0298;AF1=0.5;AC1=1;DP4=16,11,21,7;MQ=60;FQ=117;PV4=0.26,3.9e-18,1,1 GT:PL:GQ 0/1:144,0,255:99 chr1 117957288 . A G 42 . DP=9;VDB=0.0019;AF1=0.5;AC1=1;DP4=4,0,4,1;MQ=60;FQ=45;PV4=1,3.8e-05,1,0.17 GT:PL:GQ 0/1:72,0,101:75 chr1 118065841 . A G 188 . DP=82;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,33,47;MQ=60;FQ=-268 GT:PL:GQ 1/1:221,241,0:99 chr1 118165328 . T C 45 . DP=6;VDB=0.0000;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=43.9;PV4=1,1,1,1 GT:PL:GQ 0/1:75,0,73:74 chr1 118165577 . C G 225 . DP=102;VDB=0.0392;AF1=0.5;AC1=1;DP4=30,30,20,19;MQ=60;FQ=225;PV4=1,0.2,0.039,1 GT:PL:GQ 0/1:255,0,255:99 chr1 118165691 . C T 26 . DP=83;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,32,47;MQ=59;FQ=-86 GT:PL:GQ 1/1:255,255,196:82 chr1 118165973 . C T 225 . DP=68;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,17,16,13;MQ=60;FQ=225;PV4=1,0.095,1,0.4 GT:PL:GQ 0/1:255,0,255:99 chr1 118166331 . A G 225 . DP=68;VDB=0.0400;AF1=0.5;AC1=1;DP4=21,11,18,18;MQ=59;FQ=225;PV4=0.23,0.39,1,0.43 GT:PL:GQ 0/1:255,0,255:99 chr1 118320859 . T A 85 . DP=11;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,9,2;MQ=29;FQ=-60 GT:PL:GQ 1/1:118,33,0:63 chr1 118484265 . G A 38.8 . DP=2;VDB=0.0161;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:70,6,0:10 chr1 118526592 . G A 30.8 . DP=2;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:62,6,0:10 chr1 118693217 . T C 90 . DP=8;VDB=0.0333;AF1=0.5;AC1=1;DP4=0,3,2,2;MQ=60;FQ=54;PV4=0.43,0.19,1,0.4 GT:PL:GQ 0/1:120,0,81:84 chr1 119466275 . A G 222 . DP=29;VDB=0.0164;AF1=1;AC1=2;DP4=0,1,3,24;MQ=58;FQ=-82;PV4=1,0.31,1,0.28 GT:PL:GQ 1/1:255,55,0:99 chr1 119683063 . G A 57.1 . DP=7;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-48 GT:PL:GQ 1/1:90,21,0:39 chr1 119683390 . G A 3.98 . DP=3;VDB=0.0089;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr1 119923531 . A C 88 . DP=20;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,7,2,9;MQ=60;FQ=91;PV4=1,2.6e-08,1,1 GT:PL:GQ 0/1:118,0,150:99 chr1 119923724 . T C 150 . DP=69;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,6,18,21;MQ=60;FQ=153;PV4=0.012,4.3e-24,1,1 GT:PL:GQ 0/1:180,0,255:99 chr1 119925464 . G A 32 . DP=22;VDB=0.0118;AF1=0.5;AC1=1;DP4=9,1,9,1;MQ=60;FQ=35;PV4=1,1.5e-09,1,0.26 GT:PL:GQ 0/1:62,0,178:65 chr1 119927680 . A G 116 . DP=105;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,34,15,40;MQ=60;FQ=119;PV4=0.83,2.3e-39,1,0.41 GT:PL:GQ 0/1:146,0,255:99 chr1 119935507 . A T 23 . DP=3;VDB=0.0186;AF1=0.5008;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-4.12;PV4=1,0.48,1,1 GT:PL:GQ 0/1:53,0,25:28 chr1 119936263 . G A 225 . DP=34;VDB=0.0164;AF1=0.5;AC1=1;DP4=11,1,18,4;MQ=60;FQ=155;PV4=0.63,0.086,1,0.15 GT:PL:GQ 0/1:255,0,182:99 chr1 119936414 . G A 180 . DP=113;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,37,20,31;MQ=59;FQ=183;PV4=0.85,6.9e-29,0.24,1 GT:PL:GQ 0/1:210,0,255:99 chr1 120057158 . C T 134 . DP=68;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,22,7,29;MQ=59;FQ=137;PV4=1,9.3e-20,1,1 GT:PL:GQ 0/1:164,0,255:99 chr1 120057246 . C A 30 . DP=20;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,4,0,15;MQ=60;FQ=32.6;PV4=1,1.2e-10,1,1 GT:PL:GQ 0/1:60,0,70:63 chr1 120165826 . C T 222 . DP=45;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,9,34;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 120166681 . G A 222 . DP=103;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,42,58;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 120263643 . T C 142 . DP=32;VDB=0.0053;AF1=0.5;AC1=1;DP4=13,1,16,0;MQ=60;FQ=145;PV4=0.47,0.12,1,0.11 GT:PL:GQ 0/1:172,0,201:99 chr1 120267505 . C G 225 . DP=95;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,27,15,27;MQ=60;FQ=225;PV4=0.3,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 120285546 . G A 222 . DP=50;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,39,9;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 120293352 . T C 68 . DP=40;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,7,15,2;MQ=60;FQ=71;PV4=0.25,3.3e-13,1,1 GT:PL:GQ 0/1:98,0,255:99 chr1 120293367 . T C 209 . DP=51;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,32,15;MQ=60;FQ=-168 GT:PL:GQ 1/1:242,141,0:99 chr1 120293568 . G A 119 . DP=26;VDB=0.0380;AF1=0.5;AC1=1;DP4=0,9,3,14;MQ=59;FQ=111;PV4=0.53,1.2e-13,1,0.34 GT:PL:GQ 0/1:149,0,138:99 chr1 120336785 . C T 124 . DP=50;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,6,16,17;MQ=60;FQ=127;PV4=0.75,8.3e-20,1,1 GT:PL:GQ 0/1:154,0,220:99 chr1 120336876 . T G 49 . DP=32;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,17,4,8;MQ=60;FQ=52;PV4=0.17,7.8e-14,1,1 GT:PL:GQ 0/1:79,0,232:82 chr1 120337384 . T C 7.8 . DP=11;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,6,0,5;MQ=60;FQ=10.4;PV4=1,4e-06,1,0.38 GT:PL:GQ 0/1:37,0,130:39 chr1 120378678 . C T 135 . DP=37;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,26,8;MQ=60;FQ=-129 GT:PL:GQ 1/1:168,102,0:99 chr1 120380008 . T A 194 . DP=17;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,1,15;MQ=57;FQ=-75 GT:PL:GQ 1/1:227,48,0:93 chr1 120384205 . A G 7.59 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr1 120467876 . G A 13.2 . DP=5;VDB=0.0208;AF1=0.5;AC1=1;DP4=2,0,2,1;MQ=60;FQ=16;PV4=1,0.026,1,1 GT:PL:GQ 0/1:43,0,57:45 chr1 120478285 . T C 222 . DP=29;VDB=0.0244;AF1=1;AC1=2;DP4=1,0,3,24;MQ=59;FQ=-86;PV4=0.14,1,1,0.25 GT:PL:GQ 1/1:255,59,0:99 chr1 120512104 . T C 47 . DP=15;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:80,42,0:80 chr1 120539331 . C T 23 . DP=221;VDB=0.0392;AF1=0.5;AC1=1;DP4=74,81,34,30;MQ=55;FQ=26;PV4=0.55,1.9e-60,1.3e-06,1 GT:PL:GQ 0/1:53,0,255:56 chr1 120611715 . A G 13.2 . DP=27;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,20,3,2;MQ=45;FQ=16.1;PV4=0.014,0.03,0.082,1 GT:PL:GQ 0/1:43,0,181:46 chr1 120611758 . G A 14.2 . DP=16;VDB=0.0126;AF1=0.5;AC1=1;DP4=1,11,1,3;MQ=47;FQ=17.1;PV4=0.45,3e-05,0.21,1 GT:PL:GQ 0/1:44,0,159:47 chr1 120611964 . G C 18.1 . DP=7;VDB=0.0225;AF1=0.5;AC1=1;DP4=2,2,1,2;MQ=37;FQ=21;PV4=1,0.13,1,1 GT:PL:GQ 0/1:48,0,91:51 chr1 120612006 . G A 4.77 . DP=7;VDB=0.0167;AF1=0.4999;AC1=1;DP4=3,0,1,1;MQ=40;FQ=6.98;PV4=0.4,0.0029,0.26,1 GT:PL:GQ 0/1:33,0,74:33 chr1 120612154 . C G 113 . DP=16;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,4,4,5;MQ=42;FQ=116;PV4=1,1.2e-07,1,1 GT:PL:GQ 0/1:143,0,153:99 chr1 120612163 . C A 83 . DP=15;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,4,3,5;MQ=43;FQ=86;PV4=1,2.8e-06,1,1 GT:PL:GQ 0/1:113,0,153:99 chr1 120612168 . C T 69 . DP=15;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,6,2,3;MQ=45;FQ=72;PV4=1,0.23,1,0.23 GT:PL:GQ 0/1:99,0,187:99 chr1 120612265 . A G 13.9 . DP=3;VDB=0.0225;AF1=1;AC1=2;DP4=0,0,0,2;MQ=29;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr1 121115786 . C A 49 . DP=19;VDB=0.0053;AF1=0.5;AC1=1;DP4=8,0,9,2;MQ=32;FQ=52;PV4=0.49,3.2e-06,0.4,0.48 GT:PL:GQ 0/1:79,0,102:82 chr1 121116121 . T C 3.01 . DP=7;VDB=0.0186;AF1=0.4997;AC1=1;DP4=0,5,0,2;MQ=31;FQ=4.77;PV4=1,0.18,1,1 GT:PL:GQ 0/1:30,0,76:28 chr1 121116688 . A G 225 . DP=63;VDB=0.0399;AF1=0.5;AC1=1;DP4=25,6,23,5;MQ=51;FQ=225;PV4=1,0.014,4.1e-06,1 GT:PL:GQ 0/1:255,0,255:99 chr1 121116933 . T C 25 . DP=5;VDB=0.0196;AF1=0.5;AC1=1;DP4=0,3,0,2;MQ=56;FQ=28;PV4=1,1,0.14,0.48 GT:PL:GQ 0/1:55,0,74:58 chr1 144013853 . T C 109 . DP=64;VDB=0.0380;AF1=0.5;AC1=1;DP4=29,7,20,6;MQ=59;FQ=112;PV4=0.76,1.4e-10,0.41,0.16 GT:PL:GQ 0/1:139,0,255:99 chr1 144013865 . T G 116 . DP=67;VDB=0.0322;AF1=0.5;AC1=1;DP4=31,10,18,6;MQ=60;FQ=119;PV4=1,3.3e-14,0.097,1 GT:PL:GQ 0/1:146,0,255:99 chr1 144014051 . G A 180 . DP=69;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,37,5,17;MQ=59;FQ=183;PV4=0.76,0.031,1,1 GT:PL:GQ 0/1:210,0,255:99 chr1 144014068 . T C 225 . DP=48;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,16,4,25;MQ=59;FQ=190;PV4=1,0.022,1,0.17 GT:PL:GQ 0/1:255,0,217:99 chr1 144854454 . A C 22 . DP=5;VDB=0.0033;AF1=0.5016;AC1=1;DP4=1,0,4,0;MQ=56;FQ=-6.19;PV4=1,7.9e-05,1,1 GT:PL:GQ 0/1:52,0,22:25 chr1 144854497 . A G 20 . DP=7;VDB=0.0112;AF1=0.5;AC1=1;DP4=5,0,2,0;MQ=54;FQ=23;PV4=1,1,0.34,0.1 GT:PL:GQ 0/1:50,0,99:53 chr1 144859720 . G C 20.3 . DP=5;VDB=0.0004;AF1=0.5263;AC1=1;DP4=1,0,3,1;MQ=58;FQ=-17.1;PV4=1,0.058,1,1 GT:PL:GQ 0/1:50,0,10:13 chr1 144860026 . G C 221 . DP=33;VDB=0.0099;AF1=0.5;AC1=1;DP4=3,13,4,13;MQ=57;FQ=203;PV4=1,0.31,1,1 GT:PL:GQ 0/1:251,0,230:99 chr1 144865850 . G T 115 . DP=72;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,18,16,20;MQ=60;FQ=118;PV4=0.81,5.4e-32,0.16,1 GT:PL:GQ 0/1:145,0,255:99 chr1 144866509 . G A 62 . DP=32;VDB=0.0118;AF1=0.5;AC1=1;DP4=15,1,13,1;MQ=60;FQ=65;PV4=1,2.6e-09,1,1 GT:PL:GQ 0/1:92,0,194:95 chr1 144866643 . G A 161 . DP=153;VDB=0.0345;AF1=0.5;AC1=1;DP4=37,49,32,34;MQ=59;FQ=164;PV4=0.52,2.4e-41,0.11,1 GT:PL:GQ 0/1:191,0,255:99 chr1 144866662 . T C 165 . DP=148;VDB=0.0345;AF1=0.5;AC1=1;DP4=32,54,29,33;MQ=60;FQ=168;PV4=0.31,1.3e-35,0.049,0.1 GT:PL:GQ 0/1:195,0,255:99 chr1 144868170 . C T 164 . DP=37;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,16,1,20;MQ=59;FQ=134;PV4=1,0.053,1,0.34 GT:PL:GQ 0/1:194,0,161:99 chr1 144871738 . C A 72 . DP=8;VDB=0.0003;AF1=0.5;AC1=1;DP4=1,1,5,1;MQ=60;FQ=23;PV4=0.46,0.0016,1,0.14 GT:PL:GQ 0/1:102,0,50:53 chr1 144871755 . A T 154 . DP=14;VDB=0.0014;AF1=0.5;AC1=1;DP4=3,2,7,2;MQ=60;FQ=85;PV4=0.58,1,1,1 GT:PL:GQ 0/1:184,0,112:99 chr1 144871782 . A G 76 . DP=33;VDB=0.0216;AF1=0.5;AC1=1;DP4=10,6,12,4;MQ=60;FQ=79;PV4=0.7,4.9e-18,1,1 GT:PL:GQ 0/1:106,0,255:99 chr1 144871889 . A C 89 . DP=74;VDB=0.0380;AF1=0.5;AC1=1;DP4=23,19,15,16;MQ=60;FQ=92;PV4=0.64,1.1e-34,1,0.48 GT:PL:GQ 0/1:119,0,255:99 chr1 144873840 . A G 32 . DP=30;VDB=0.0006;AF1=0.5;AC1=1;DP4=11,1,17,0;MQ=60;FQ=35;PV4=0.41,5.6e-17,1,1 GT:PL:GQ 0/1:62,0,174:65 chr1 144873887 . C T 86 . DP=70;VDB=0.0216;AF1=0.5;AC1=1;DP4=28,5,31,6;MQ=59;FQ=89;PV4=1,1.3e-33,0.092,1 GT:PL:GQ 0/1:116,0,255:99 chr1 144873962 . CT C 140 . INDEL;DP=111;VDB=0.0345;AF1=0.5;AC1=1;DP4=41,44,11,12;MQ=60;FQ=143;PV4=1,1.4e-13,0.027,0.31 GT:PL:GQ 0/1:178,0,255:99 chr1 144874038 . T C 119 . DP=67;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,25,6,31;MQ=60;FQ=122;PV4=1,1.9e-18,0.19,1 GT:PL:GQ 0/1:149,0,255:99 chr1 144874070 . C T 145 . DP=25;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,10,0,14;MQ=59;FQ=114;PV4=1,1,0.21,1 GT:PL:GQ 0/1:175,0,141:99 chr1 144874088 . G C 22 . DP=12;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,4,0,7;MQ=58;FQ=25;PV4=1,1.2e-05,0.24,1 GT:PL:GQ 0/1:52,0,88:55 chr1 144874641 . G C 27 . DP=9;VDB=0.0011;AF1=0.5;AC1=1;DP4=3,0,6,0;MQ=60;FQ=29.9;PV4=1,1.9e-06,1,1 GT:PL:GQ 0/1:57,0,74:60 chr1 144874760 . T C 148 . DP=68;VDB=0.0271;AF1=0.5;AC1=1;DP4=24,13,19,12;MQ=60;FQ=151;PV4=0.8,4.5e-25,0.14,1 GT:PL:GQ 0/1:178,0,255:99 chr1 144874815 . T C 166 . DP=58;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,26,6,9;MQ=60;FQ=169;PV4=1,0.15,0.045,0.43 GT:PL:GQ 0/1:196,0,255:99 chr1 144874950 . G A 63 . DP=15;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,6,1,8;MQ=60;FQ=65.9;PV4=1,0.00013,1,1 GT:PL:GQ 0/1:93,0,110:96 chr1 144877176 . C T 98 . DP=29;VDB=0.0033;AF1=0.5;AC1=1;DP4=15,1,10,3;MQ=56;FQ=101;PV4=0.3,4.6e-12,0.0048,0.22 GT:PL:GQ 0/1:128,0,210:99 chr1 144877366 . A G 225 . DP=34;VDB=0.0140;AF1=0.5;AC1=1;DP4=2,14,4,14;MQ=58;FQ=194;PV4=0.66,1,0.095,1 GT:PL:GQ 0/1:255,0,221:99 chr1 144877390 . G A 44 . DP=19;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,7,0,12;MQ=58;FQ=47;PV4=1,1.7e-11,0.36,0.49 GT:PL:GQ 0/1:74,0,123:77 chr1 144879264 . A G 128 . DP=48;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,12,11,13;MQ=60;FQ=131;PV4=1,8.1e-15,0.18,1 GT:PL:GQ 0/1:158,0,255:99 chr1 144879375 . T C 111 . DP=40;VDB=0.0298;AF1=0.5;AC1=1;DP4=16,5,9,10;MQ=58;FQ=114;PV4=0.1,4.6e-18,0.13,1 GT:PL:GQ 0/1:141,0,255:99 chr1 144882581 . A G 98 . DP=20;VDB=0.0241;AF1=0.5;AC1=1;DP4=4,4,4,5;MQ=60;FQ=101;PV4=1,0.00092,1,1 GT:PL:GQ 0/1:128,0,166:99 chr1 144882823 . C T 112 . DP=281;VDB=0.0399;AF1=0.5;AC1=1;DP4=60,102,26,88;MQ=60;FQ=115;PV4=0.012,7.4e-86,0.32,1 GT:PL:GQ 0/1:142,0,255:99 chr1 144886063 . T C 4.13 . DP=22;VDB=0.0384;AF1=0.4998;AC1=1;DP4=14,2,6,0;MQ=60;FQ=6.2;PV4=1,3.4e-10,1,0.14 GT:PL:GQ 0/1:32,0,232:31 chr1 144886092 . C T 25 . DP=25;VDB=0.0393;AF1=0.5;AC1=1;DP4=13,4,7,1;MQ=60;FQ=28;PV4=1,1.3e-09,1,0.41 GT:PL:GQ 0/1:55,0,255:58 chr1 144886197 . A T 128 . DP=65;VDB=0.0398;AF1=0.5;AC1=1;DP4=19,19,16,8;MQ=59;FQ=131;PV4=0.29,3.3e-20,1,1 GT:PL:GQ 0/1:158,0,255:99 chr1 144890833 . T C 74 . DP=32;VDB=0.0053;AF1=0.5;AC1=1;DP4=17,0,14,1;MQ=59;FQ=77;PV4=0.47,2.4e-14,0.064,1 GT:PL:GQ 0/1:104,0,178:99 chr1 144892089 . G T 20 . DP=11;VDB=0.0042;AF1=0.5;AC1=1;DP4=5,0,5,0;MQ=55;FQ=23;PV4=1,4.3e-07,0.071,0.027 GT:PL:GQ 0/1:50,0,120:53 chr1 144892149 . G A 225 . DP=41;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,5,15,5;MQ=59;FQ=225;PV4=1,0.35,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr1 144892368 . A T 93 . DP=42;VDB=0.0081;AF1=0.5;AC1=1;DP4=26,1,11,3;MQ=60;FQ=96;PV4=0.11,3.2e-15,1,0.39 GT:PL:GQ 0/1:123,0,218:99 chr1 144910082 . A G 87 . DP=29;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,8,4,15;MQ=60;FQ=90;PV4=1,5.8e-15,1,0.21 GT:PL:GQ 0/1:117,0,187:99 chr1 144912153 . A G 18.1 . DP=6;VDB=0.0133;AF1=0.5;AC1=1;DP4=2,1,3,0;MQ=60;FQ=21;PV4=1,0.0014,1,1 GT:PL:GQ 0/1:48,0,91:51 chr1 144912233 . C T 55 . DP=13;VDB=0.0199;AF1=0.5;AC1=1;DP4=5,4,2,2;MQ=58;FQ=58;PV4=1,0.34,1,1 GT:PL:GQ 0/1:85,0,191:88 chr1 144915412 . T C 118 . DP=46;VDB=0.0033;AF1=0.5;AC1=1;DP4=32,2,11,1;MQ=57;FQ=121;PV4=1,1,0.025,1 GT:PL:GQ 0/1:148,0,238:99 chr1 144915561 . G A 222 . DP=52;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,24,4,19;MQ=58;FQ=186;PV4=0.18,0.0058,0.015,1 GT:PL:GQ 0/1:252,0,213:99 chr1 144915624 . G A 19.1 . DP=10;VDB=0.0027;AF1=0.5;AC1=1;DP4=0,6,0,4;MQ=50;FQ=22;PV4=1,0.00014,0,1 GT:PL:GQ 0/1:49,0,128:52 chr1 144916748 . C G 218 . DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,31,3,22;MQ=59;FQ=220;PV4=1,0.31,0.18,1 GT:PL:GQ 0/1:248,0,255:99 chr1 144917546 . A G 72 . DP=44;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,15,5,13;MQ=59;FQ=75;PV4=0.74,2.1e-10,1,0.29 GT:PL:GQ 0/1:102,0,255:99 chr1 144917841 . T C 116 . DP=15;VDB=0.0014;AF1=0.5;AC1=1;DP4=7,1,5,2;MQ=54;FQ=119;PV4=0.57,0.13,0.28,1 GT:PL:GQ 0/1:146,0,170:99 chr1 144918957 . T A 198 . DP=136;VDB=0.0365;AF1=0.5;AC1=1;DP4=35,29,33,34;MQ=58;FQ=201;PV4=0.6,5.2e-36,0.42,1 GT:PL:GQ 0/1:228,0,255:99 chr1 144919008 . ACC AC 38.5 . INDEL;DP=113;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,68,3,15;MQ=59;FQ=41.5;PV4=1,0.02,0.19,0.28 GT:PL:GQ 0/1:76,0,255:79 chr1 144919094 . C T 94 . DP=11;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=59;FQ=85.7;PV4=1,0.25,1,1 GT:PL:GQ 0/1:124,0,113:99 chr1 144922109 . A G 93 . DP=178;VDB=0.0399;AF1=0.5;AC1=1;DP4=63,21,60,26;MQ=60;FQ=96;PV4=0.49,7.5e-82,1,0.092 GT:PL:GQ 0/1:123,0,255:99 chr1 144922171 . C T 225 . DP=295;VDB=0.0365;AF1=0.5;AC1=1;DP4=72,74,74,69;MQ=60;FQ=225;PV4=0.72,1,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr1 144922523 . C T 96 . DP=289;VDB=0.0380;AF1=0.5;AC1=1;DP4=159,63,43,23;MQ=60;FQ=99;PV4=0.36,0.42,1,0.45 GT:PL:GQ 0/1:126,0,255:99 chr1 144922583 . G A 184 . DP=285;VDB=0.0380;AF1=0.5;AC1=1;DP4=52,99,46,82;MQ=60;FQ=187;PV4=0.8,1.3e-77,0.43,0.062 GT:PL:GQ 0/1:214,0,255:99 chr1 144923823 . TAGGAAGAAACGGCAAGGAAGAAACGGCAA TAGGAAGAAACGGCAA 195 . INDEL;DP=81;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,22,6,17;MQ=49;FQ=198;PV4=0.73,1,1.4e-28,1 GT:PL:GQ 0/1:233,0,255:99 chr1 144930571 . C A 161 . DP=40;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,4,16,7;MQ=60;FQ=164;PV4=0.73,4.4e-14,1,0.16 GT:PL:GQ 0/1:191,0,248:99 chr1 144930596 . C A 225 . DP=43;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,6,13,10;MQ=60;FQ=225;PV4=0.53,1,1,0.14 GT:PL:GQ 0/1:255,0,255:99 chr1 144930940 . T C 105 . DP=146;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,57,19,46;MQ=59;FQ=108;PV4=0.34,1.5e-57,0.25,1 GT:PL:GQ 0/1:135,0,255:99 chr1 144931087 . T C 194 . DP=61;VDB=0.0399;AF1=0.5;AC1=1;DP4=23,20,6,10;MQ=60;FQ=197;PV4=0.38,1,1,1 GT:PL:GQ 0/1:224,0,255:99 chr1 144931330 . C T 225 . DP=187;VDB=0.0399;AF1=0.5;AC1=1;DP4=29,47,38,68;MQ=60;FQ=225;PV4=0.76,0.059,0.12,0.39 GT:PL:GQ 0/1:255,0,255:99 chr1 144931387 . T G 149 . DP=145;VDB=0.0384;AF1=0.5;AC1=1;DP4=35,75,12,20;MQ=60;FQ=152;PV4=0.67,0.19,1,0.092 GT:PL:GQ 0/1:179,0,255:99 chr1 144931392 . G A 225 . DP=140;VDB=0.0322;AF1=0.5;AC1=1;DP4=27,43,18,50;MQ=60;FQ=225;PV4=0.15,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 144931461 . A T 6.2 . DP=126;VDB=0.0392;AF1=0.4999;AC1=1;DP4=46,52,15,11;MQ=60;FQ=8.65;PV4=0.38,2.3e-24,1,1 GT:PL:GQ 0/1:35,0,255:36 chr1 144931727 . G A 3.54 . DP=13;VDB=0.0098;AF1=0.4998;AC1=1;DP4=1,9,0,3;MQ=60;FQ=5.47;PV4=1,9.1e-06,1,1 GT:PL:GQ 0/1:31,0,194:30 chr1 144946510 . C T 116 . DP=46;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,44,1;MQ=60;FQ=-162 GT:PL:GQ 1/1:149,135,0:99 chr1 144946768 . G A 85 . DP=50;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,22,2,20;MQ=60;FQ=88;PV4=0.67,3.1e-25,1,1 GT:PL:GQ 0/1:115,0,255:99 chr1 144951973 . T C 158 . DP=80;VDB=0.0322;AF1=0.5;AC1=1;DP4=20,9,39,11;MQ=42;FQ=161;PV4=0.43,7.9e-33,0.43,1 GT:PL:GQ 0/1:188,0,255:99 chr1 144952078 . C A 93 . DP=112;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,42,15,24;MQ=41;FQ=96;PV4=1,1.6e-37,0.1,1 GT:PL:GQ 0/1:123,0,255:99 chr1 144952220 . C T 83 . DP=140;VDB=0.0345;AF1=0.5;AC1=1;DP4=50,39,28,20;MQ=28;FQ=86;PV4=0.86,1.8e-15,0.043,1 GT:PL:GQ 0/1:113,0,244:99 chr1 144994658 . C A 225 . DP=138;VDB=0.0345;AF1=0.5;AC1=1;DP4=54,22,45,15;MQ=60;FQ=225;PV4=0.7,1,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 144994861 . C T 222 . DP=158;VDB=0.0392;AF1=1;AC1=2;DP4=5,5,64,78;MQ=60;FQ=-187;PV4=1,1,0.35,1 GT:PL:GQ 1/1:255,160,0:99 chr1 145014103 . G C 40 . DP=26;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,4,7,1;MQ=59;FQ=43;PV4=1,2.8e-08,1,1 GT:PL:GQ 0/1:70,0,255:73 chr1 145014263 . C T 88 . DP=243;VDB=0.0322;AF1=0.5;AC1=1;DP4=100,52,66,22;MQ=60;FQ=91;PV4=0.15,1.4e-65,1,1 GT:PL:GQ 0/1:118,0,255:99 chr1 145014394 . C T 225 . DP=94;VDB=0.0081;AF1=0.5;AC1=1;DP4=3,50,3,37;MQ=59;FQ=225;PV4=1,0.25,0.42,1 GT:PL:GQ 0/1:255,0,255:99 chr1 145014411 . T C 25 . DP=52;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,28,0,23;MQ=60;FQ=28;PV4=1,3.1e-30,0.13,0.11 GT:PL:GQ 0/1:55,0,221:58 chr1 145015877 . G T 52 . DP=213;VDB=0.0399;AF1=0.5;AC1=1;DP4=94,77,24,12;MQ=60;FQ=55;PV4=0.27,1,1,1 GT:PL:GQ 0/1:82,0,255:85 chr1 145016020 . T G 222 . DP=120;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,22,92;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 145017822 . ct cTt 19.5 . INDEL;DP=3;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,3,0;MQ=25;FQ=-43.5 GT:PL:GQ 1/1:59,9,0:15 chr1 145018023 . G T 20 . DP=42;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,21,5,10;MQ=59;FQ=23;PV4=0.26,1.2e-23,1,1 GT:PL:GQ 0/1:50,0,255:53 chr1 145021024 . G C 108 . DP=86;VDB=0.0053;AF1=0.5;AC1=1;DP4=61,5,18,2;MQ=60;FQ=111;PV4=0.66,0.24,1,1 GT:PL:GQ 0/1:138,0,255:99 chr1 145038736 . C G 8.64 . DP=11;VDB=0.0140;AF1=0.5;AC1=1;DP4=5,1,4,0;MQ=60;FQ=11.3;PV4=1,0.00017,1,0.36 GT:PL:GQ 0/1:38,0,143:40 chr1 145038815 . A G 222 . DP=63;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,44,17;MQ=60;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr1 145038889 . G A 48 . DP=118;VDB=0.0398;AF1=0.5;AC1=1;DP4=62,37,10,7;MQ=60;FQ=51;PV4=0.79,0.35,1,0.48 GT:PL:GQ 0/1:78,0,255:81 chr1 145038952 . C T 119 . DP=91;VDB=0.0345;AF1=0.5;AC1=1;DP4=25,22,11,26;MQ=59;FQ=122;PV4=0.045,1.7e-35,0.43,0.21 GT:PL:GQ 0/1:149,0,255:99 chr1 145039562 . C T 225 . DP=113;VDB=0.0244;AF1=0.5;AC1=1;DP4=46,20,34,9;MQ=60;FQ=225;PV4=0.38,3.8e-06,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 145074882 . G T 39 . DP=12;VDB=0.0066;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=60;FQ=42;PV4=1,5.7e-06,1,0.12 GT:PL:GQ 0/1:69,0,115:72 chr1 145074939 . T C 157 . DP=48;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,6,18,6;MQ=60;FQ=160;PV4=1,4.1e-15,0.17,1 GT:PL:GQ 0/1:187,0,255:99 chr1 145075208 . T A 39 . DP=32;VDB=0.0066;AF1=0.5;AC1=1;DP4=5,18,1,8;MQ=60;FQ=42;PV4=0.65,1.8e-09,1,1 GT:PL:GQ 0/1:69,0,255:72 chr1 145075683 . C T 85 . DP=45;VDB=0.0393;AF1=0.5;AC1=1;DP4=16,10,9,4;MQ=59;FQ=88;PV4=0.73,3.5e-10,0.08,1 GT:PL:GQ 0/1:115,0,255:99 chr1 145075854 . G C 123 . DP=85;VDB=0.0271;AF1=0.5;AC1=1;DP4=17,28,11,20;MQ=60;FQ=126;PV4=1,5.5e-26,1,1 GT:PL:GQ 0/1:153,0,255:99 chr1 145075903 . C T 10.4 . DP=68;VDB=0.0271;AF1=0.5;AC1=1;DP4=19,31,6,10;MQ=60;FQ=13.2;PV4=1,2.7e-18,1,1 GT:PL:GQ 0/1:40,0,255:42 chr1 145075923 . C T 95 . DP=54;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,22,5,15;MQ=60;FQ=98;PV4=0.76,1.8e-15,1,1 GT:PL:GQ 0/1:125,0,255:99 chr1 145103844 . G A 74 . DP=97;VDB=0.0271;AF1=0.5;AC1=1;DP4=55,9,25,4;MQ=60;FQ=77;PV4=1,1.2e-26,0.069,1 GT:PL:GQ 0/1:104,0,255:99 chr1 145103947 . T C 225 . DP=216;VDB=0.0398;AF1=0.5;AC1=1;DP4=54,73,31,49;MQ=59;FQ=225;PV4=0.66,0.23,1,0.15 GT:PL:GQ 0/1:255,0,255:99 chr1 145104052 . AGTGTG AGTG 63.5 . INDEL;DP=61;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,50,1,6;MQ=59;FQ=66.5;PV4=0.23,4.6e-05,1,1 GT:PL:GQ 0/1:101,0,255:99 chr1 145109468 . A G 222 . DP=148;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,126,15;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 145112287 . T C 94 . DP=26;VDB=0.0006;AF1=0.5;AC1=1;DP4=12,0,7,0;MQ=60;FQ=97;PV4=1,1,1,0.34 GT:PL:GQ 0/1:124,0,166:99 chr1 145115810 . A G 225 . DP=325;VDB=0.0365;AF1=0.5;AC1=1;DP4=80,85,65,88;MQ=59;FQ=225;PV4=0.31,0.22,0.00058,1 GT:PL:GQ 0/1:255,0,255:99 chr1 145115820 . T C 44 . DP=332;VDB=0.0322;AF1=0.5;AC1=1;DP4=122,147,23,36;MQ=59;FQ=47;PV4=0.39,1,1,1 GT:PL:GQ 0/1:74,0,255:77 chr1 145273520 . G A 114 . DP=118;VDB=0.0081;AF1=0.5;AC1=1;DP4=4,74,0,39;MQ=46;FQ=117;PV4=0.3,1,1,0.36 GT:PL:GQ 0/1:144,0,251:99 chr1 145281656 . A T 19.1 . DP=125;VDB=0.0392;AF1=0.5;AC1=1;DP4=37,66,6,10;MQ=50;FQ=22;PV4=1,1,1,0.23 GT:PL:GQ 0/1:49,0,244:52 chr1 145510376 . A G 36.5 . DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,0,4;MQ=23;FQ=-39 GT:PL:GQ 1/1:69,12,0:21 chr1 145517561 . C T 158 . DP=11;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:191,33,0:63 chr1 145531980 . T C 50 . DP=9;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,9,0;MQ=57;FQ=-54 GT:PL:GQ 1/1:83,27,0:51 chr1 145532549 . T C 167 . DP=74;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,34,35;MQ=59;FQ=-235 GT:PL:GQ 1/1:200,208,0:99 chr1 145532994 . GTTTTTTTT GTTTTTTT 3.82 . INDEL;DP=15;VDB=0.0380;AF1=0.5025;AC1=1;DP4=5,1,4,4;MQ=60;FQ=-14.7;PV4=0.3,0.15,1,1 GT:PL:GQ 0/1:39,0,20:27 chr1 145533175 . T C 143 . DP=41;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,9,7,13;MQ=60;FQ=146;PV4=0.34,9e-14,1,1 GT:PL:GQ 0/1:173,0,255:99 chr1 145533314 . T C 222 . DP=65;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,42,22;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr1 145535921 . T C 222 . DP=129;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,78,47;MQ=60;FQ=-282;PV4=1,2e-06,0.46,0.24 GT:PL:GQ 1/1:255,255,0:99 chr1 145536082 . G A 181 . DP=80;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,32,13,26;MQ=60;FQ=184;PV4=0.059,5.7e-18,0.17,1 GT:PL:GQ 0/1:211,0,255:99 chr1 145538139 . C T 225 . DP=51;VDB=0.0398;AF1=0.5;AC1=1;DP4=17,13,10,9;MQ=60;FQ=225;PV4=1,1,1,0.11 GT:PL:GQ 0/1:255,0,255:99 chr1 145538664 . A G 222 . DP=26;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,20,4;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 145539892 . T A 61 . DP=49;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,25,4,15;MQ=60;FQ=64;PV4=0.42,2.8e-21,0.11,1 GT:PL:GQ 0/1:91,0,255:94 chr1 145542281 . G A 225 . DP=57;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,11,9,21;MQ=60;FQ=225;PV4=0.058,0.4,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 145555653 . C T 96 . DP=131;VDB=0.0399;AF1=0.5;AC1=1;DP4=49,23,37,18;MQ=60;FQ=99;PV4=1,1.8e-51,1,0.36 GT:PL:GQ 0/1:126,0,255:99 chr1 145556986 . C T 23 . DP=6;VDB=0.0126;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=22.5;PV4=1,0.0043,1,1 GT:PL:GQ 0/1:53,0,52:52 chr1 145558565 . C G 151 . DP=8;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:184,21,0:39 chr1 145558824 . A C 29 . DP=56;VDB=0.0190;AF1=0.5;AC1=1;DP4=28,9,17,2;MQ=59;FQ=32;PV4=0.3,9.4e-23,0.32,1 GT:PL:GQ 0/1:59,0,255:62 chr1 145561594 . C T 128 . DP=126;VDB=0.0345;AF1=0.5;AC1=1;DP4=36,21,40,27;MQ=60;FQ=131;PV4=0.72,9.6e-49,1,1 GT:PL:GQ 0/1:158,0,255:99 chr1 145562293 . G C 225 . DP=83;VDB=0.0400;AF1=0.5;AC1=1;DP4=21,19,12,28;MQ=60;FQ=225;PV4=0.069,0.31,1,0.13 GT:PL:GQ 0/1:255,0,255:99 chr1 145562881 . T C 113 . DP=22;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,8,6,5;MQ=60;FQ=116;PV4=0.39,4.3e-05,1,1 GT:PL:GQ 0/1:143,0,202:99 chr1 145566535 . C T 48 . DP=16;VDB=0.0042;AF1=0.5;AC1=1;DP4=5,2,8,0;MQ=60;FQ=51;PV4=0.2,9.6e-07,1,1 GT:PL:GQ 0/1:78,0,161:81 chr1 145575987 . C A 20 . DP=6;VDB=0.0110;AF1=0.5;AC1=1;DP4=4,0,1,1;MQ=60;FQ=23;PV4=0.33,0.092,1,0.089 GT:PL:GQ 0/1:50,0,97:53 chr1 145581623 . ATTTCTttttctttttctttt ATTTCTTTTTCTttttctttttctttt 72.5 . INDEL;DP=19;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,1,0,5;MQ=56;FQ=8.19;PV4=1,0.27,0.35,1 GT:PL:GQ 0/1:110,0,42:45 chr1 145585317 . A G 175 . DP=33;VDB=0.0400;AF1=1;AC1=2;DP4=1,0,20,9;MQ=60;FQ=-88;PV4=1,0.033,1,1 GT:PL:GQ 1/1:208,61,0:99 chr1 145588536 . C T 131 . DP=120;VDB=0.0345;AF1=0.5;AC1=1;DP4=33,23,31,26;MQ=59;FQ=134;PV4=0.71,6.7e-32,0.022,1 GT:PL:GQ 0/1:161,0,255:99 chr1 145597116 . C T 222 . DP=32;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,5,25;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 145597417 . C A 56 . DP=21;VDB=0.0373;AF1=0.5;AC1=1;DP4=7,4,8,1;MQ=60;FQ=59;PV4=0.32,0.00037,1,1 GT:PL:GQ 0/1:86,0,210:89 chr1 145598459 . T C 222 . DP=23;VDB=0.0305;AF1=1;AC1=2;DP4=0,0,12,8;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr1 145601861 . G A 159 . DP=68;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,13,54;MQ=60;FQ=-229 GT:PL:GQ 1/1:192,202,0:99 chr1 145696694 . G A 225 . DP=69;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,26,11,20;MQ=60;FQ=225;PV4=0.8,1,1,0.4 GT:PL:GQ 0/1:255,0,255:99 chr1 146321029 . C T 9.08 . DP=5;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,4;MQ=14;FQ=-39 GT:PL:GQ 1/1:41,12,0:16 chr1 146633933 . G A 123 . DP=19;VDB=0.0140;AF1=0.5;AC1=1;DP4=5,1,7,5;MQ=60;FQ=99;PV4=0.6,2.9e-08,1,1 GT:PL:GQ 0/1:153,0,126:99 chr1 146643555 . A G 138 . DP=9;VDB=0.0384;AF1=0.5;AC1=1;DP4=1,1,3,4;MQ=60;FQ=16.1;PV4=1,0.42,1,0.29 GT:PL:GQ 0/1:168,0,43:46 chr1 146656292 . A G 165 . DP=29;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,23;MQ=60;FQ=-108 GT:PL:GQ 1/1:198,81,0:99 chr1 146672906 . C T 222 . DP=94;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,52,40;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 146673178 . A G 3.98 . DP=4;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr1 146680262 . A G 34.5 . DP=4;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:67,12,0:21 chr1 146684095 . T C 85 . DP=56;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,24,4,23;MQ=60;FQ=88;PV4=1,2.4e-27,1,0.086 GT:PL:GQ 0/1:115,0,255:99 chr1 146685121 . G A 51.3 . DP=5;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:84,15,0:27 chr1 146687250 . A T 82 . DP=11;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,11,0;MQ=58;FQ=-60 GT:PL:GQ 1/1:115,33,0:63 chr1 146714392 . G T,C 60.3 . DP=12;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:172,94,79,105,0,87:27 chr1 146724093 . A G 222 . DP=17;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,5,12;MQ=60;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr1 146728149 . A G 107 . DP=57;VDB=0.0216;AF1=0.5;AC1=1;DP4=27,6,20,4;MQ=59;FQ=110;PV4=1,3.4e-25,1,1 GT:PL:GQ 0/1:137,0,255:99 chr1 146728162 . TA TAA 214 . INDEL;DP=74;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,55,17;MQ=59;FQ=-232;PV4=1,1,1,0.21 GT:PL:GQ 1/1:255,197,0:99 chr1 146736092 . C T 58 . DP=19;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,2,12,1;MQ=60;FQ=61;PV4=0.22,8.2e-10,1,0.032 GT:PL:GQ 0/1:88,0,137:91 chr1 146739068 . T C 34 . DP=100;VDB=0.0271;AF1=0.5;AC1=1;DP4=40,14,20,6;MQ=59;FQ=37;PV4=1,1.8e-24,0.3,1 GT:PL:GQ 0/1:64,0,255:67 chr1 146739277 . T C 100 . DP=72;VDB=0.0164;AF1=0.5;AC1=1;DP4=7,31,4,27;MQ=60;FQ=103;PV4=0.74,1e-25,0.14,0.33 GT:PL:GQ 0/1:130,0,255:99 chr1 146740502 . C G 127 . DP=62;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,10,20,5;MQ=60;FQ=130;PV4=0.56,9.2e-24,1,1 GT:PL:GQ 0/1:157,0,255:99 chr1 146740576 . G A 222 . DP=83;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,31,51;MQ=60;FQ=-244;PV4=0.39,0.0024,1,0.24 GT:PL:GQ 1/1:255,217,0:99 chr1 146747153 . T C 155 . DP=70;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,51;MQ=60;FQ=-226 GT:PL:GQ 1/1:188,199,0:99 chr1 146751782 . A C 222 . DP=24;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,12,11;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr1 146759306 . T C 67 . DP=26;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,3,11,3;MQ=60;FQ=70;PV4=1,3.2e-12,1,1 GT:PL:GQ 0/1:97,0,222:99 chr1 146763089 . G A 89 . DP=73;VDB=0.0365;AF1=0.5;AC1=1;DP4=23,13,22,9;MQ=59;FQ=92;PV4=0.61,8.5e-26,0.24,1 GT:PL:GQ 0/1:119,0,255:99 chr1 146766069 . C CAT 214 . INDEL;DP=39;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,28,11;MQ=58;FQ=-152 GT:PL:GQ 1/1:255,117,0:99 chr1 146767149 . G T 158 . DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,4;MQ=60;FQ=-72 GT:PL:GQ 1/1:191,45,0:87 chr1 147083744 . C T 64 . DP=17;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,7,1,8;MQ=60;FQ=67;PV4=1,4.5e-06,1,1 GT:PL:GQ 0/1:94,0,133:97 chr1 147087721 . T A 225 . DP=46;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,23,4,16;MQ=59;FQ=225;PV4=0.68,0.18,1,0.43 GT:PL:GQ 0/1:255,0,255:99 chr1 147091972 . C T 174 . DP=55;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,15,9,18;MQ=60;FQ=177;PV4=0.58,1.4e-11,0.16,0.47 GT:PL:GQ 0/1:204,0,255:99 chr1 147096794 . A G 104 . DP=14;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,3,11;MQ=60;FQ=-69 GT:PL:GQ 1/1:137,42,0:81 chr1 147096828 . C G 15.9 . DP=2;VDB=0.0139;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:47,6,0:10 chr1 147119273 . G A 225 . DP=79;VDB=0.0345;AF1=0.5;AC1=1;DP4=24,20,16,19;MQ=60;FQ=225;PV4=0.5,0.2,1,0.42 GT:PL:GQ 0/1:255,0,255:99 chr1 147121977 . C T 222 . DP=23;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,17,4;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 147124310 . T G 108 . DP=26;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,3,7,5;MQ=60;FQ=111;PV4=0.41,9.2e-08,1,1 GT:PL:GQ 0/1:138,0,232:99 chr1 147131465 . T C 86 . DP=30;VDB=0.0099;AF1=0.5;AC1=1;DP4=14,2,12,2;MQ=60;FQ=89;PV4=1,5.9e-11,1,1 GT:PL:GQ 0/1:116,0,225:99 chr1 147131501 . A T 123 . DP=54;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,6,21,4;MQ=60;FQ=126;PV4=0.73,5.5e-19,0.16,1 GT:PL:GQ 0/1:153,0,255:99 chr1 147131945 . T C 48 . DP=4;VDB=0.0060;AF1=0.5004;AC1=1;DP4=0,1,0,3;MQ=54;FQ=3.55;PV4=1,0.23,0.33,0.28 GT:PL:GQ 0/1:78,0,28:31 chr1 147230217 . T C 29 . DP=32;VDB=0.0298;AF1=0.5;AC1=1;DP4=18,3,9,2;MQ=60;FQ=32;PV4=1,3e-16,1,1 GT:PL:GQ 0/1:59,0,255:62 chr1 147381444 . A C 21.5 . DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:54,12,0:21 chr1 147806559 . C T 222 . DP=41;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,28,13;MQ=60;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 147806874 . G C 37 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:69,9,0:16 chr1 147806880 . T C 22.8 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:54,6,0:10 chr1 149676401 . A G 127 . DP=71;VDB=0.0393;AF1=0.5;AC1=1;DP4=14,22,5,26;MQ=42;FQ=130;PV4=0.057,1.8e-24,4e-10,0.094 GT:PL:GQ 0/1:157,0,255:99 chr1 149783886 . C T 216 . DP=25;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,5,3,14;MQ=50;FQ=86;PV4=0.61,1,1,0.3 GT:PL:GQ 0/1:246,0,113:99 chr1 149871905 . G C 146 . DP=36;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,6,11,10;MQ=60;FQ=149;PV4=1,1.6e-10,1,1 GT:PL:GQ 0/1:176,0,206:99 chr1 149880863 . A G 159 . DP=128;VDB=0.0392;AF1=0.5;AC1=1;DP4=36,39,26,23;MQ=59;FQ=162;PV4=0.71,1.8e-28,1,1 GT:PL:GQ 0/1:189,0,255:99 chr1 149881173 . A C 135 . DP=42;VDB=0.0384;AF1=0.5;AC1=1;DP4=3,15,5,15;MQ=59;FQ=138;PV4=0.7,2.5e-11,1,1 GT:PL:GQ 0/1:165,0,234:99 chr1 149881183 . C T 225 . DP=39;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,15,5,16;MQ=59;FQ=202;PV4=0.7,1,1,0.24 GT:PL:GQ 0/1:255,0,229:99 chr1 149897528 . T A 70 . DP=7;VDB=0.0014;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=35;PV4=1,1,1,0.019 GT:PL:GQ 0/1:100,0,62:65 chr1 149897966 . T G 111 . DP=30;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,10,6,12;MQ=58;FQ=114;PV4=0.42,6.1e-15,0.13,1 GT:PL:GQ 0/1:141,0,198:99 chr1 149900610 . T C 225 . DP=33;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,2,16,3;MQ=59;FQ=181;PV4=1,0.29,0.21,1 GT:PL:GQ 0/1:255,0,208:99 chr1 149903122 . G C 14.2 . DP=14;VDB=0.0164;AF1=0.5;AC1=1;DP4=5,2,6,1;MQ=60;FQ=17.1;PV4=1,0.00012,1,1 GT:PL:GQ 0/1:44,0,151:47 chr1 149906167 . T G 129 . DP=39;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,5,14,4;MQ=60;FQ=132;PV4=1,3.6e-12,1,0.34 GT:PL:GQ 0/1:159,0,255:99 chr1 149907172 . CAAA CAA 179 . INDEL;DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,6,15,5;MQ=59;FQ=182;PV4=1,0.29,0.14,1 GT:PL:GQ 0/1:217,0,235:99 chr1 149907258 . C T 225 . DP=70;VDB=0.0345;AF1=0.5;AC1=1;DP4=23,18,17,11;MQ=60;FQ=225;PV4=0.81,0.19,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 149907276 . A G 166 . DP=88;VDB=0.0400;AF1=0.5;AC1=1;DP4=28,22,22,15;MQ=60;FQ=169;PV4=0.83,7.1e-19,1,0.47 GT:PL:GQ 0/1:196,0,255:99 chr1 149908108 . A G 225 . DP=34;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,14,6,11;MQ=59;FQ=174;PV4=0.22,1,1,1 GT:PL:GQ 0/1:255,0,201:99 chr1 149943157 . G A 170 . DP=109;VDB=0.0322;AF1=0.5;AC1=1;DP4=31,20,33,24;MQ=60;FQ=173;PV4=0.85,6.9e-45,1,1 GT:PL:GQ 0/1:200,0,255:99 chr1 150049934 . A G 13.2 . DP=51;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,27,0,20;MQ=60;FQ=16.1;PV4=0.51,1e-21,0.12,1 GT:PL:GQ 0/1:43,0,246:46 chr1 150122493 . T C 17.8 . DP=2;VDB=0.0096;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:49,6,0:10 chr1 150128425 . C T 17.1 . DP=10;VDB=0.0287;AF1=0.5;AC1=1;DP4=1,5,0,4;MQ=60;FQ=20.1;PV4=1,0.0029,1,0.2 GT:PL:GQ 0/1:47,0,137:50 chr1 150129267 . G A 90 . DP=11;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,11;MQ=58;FQ=-60 GT:PL:GQ 1/1:123,33,0:63 chr1 150130982 . G GC 186 . INDEL;DP=57;VDB=0.0099;AF1=0.5;AC1=1;DP4=25,4,26,2;MQ=60;FQ=189;PV4=0.67,0.26,1,0.28 GT:PL:GQ 0/1:224,0,255:99 chr1 150193165 . G A 77 . DP=29;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,11,2,16;MQ=59;FQ=80;PV4=0.51,1.1e-16,1,0.25 GT:PL:GQ 0/1:107,0,151:99 chr1 150199123 . G T 225 . DP=78;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,36,12,19;MQ=59;FQ=225;PV4=0.2,1,0.38,0.41 GT:PL:GQ 0/1:255,0,255:99 chr1 150249101 . C A 14.2 . DP=6;VDB=0.0005;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=60;FQ=15.9;PV4=1,0.0017,1,1 GT:PL:GQ 0/1:44,0,49:46 chr1 150258838 . C G 225 . DP=67;VDB=0.0216;AF1=0.5;AC1=1;DP4=21,12,21,9;MQ=59;FQ=225;PV4=0.79,0.043,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 150281202 . A C 33 . DP=14;VDB=0.0118;AF1=0.5;AC1=1;DP4=7,0,6,0;MQ=60;FQ=36;PV4=1,1.2e-07,1,1 GT:PL:GQ 0/1:63,0,140:66 chr1 150281343 . C T 128 . DP=87;VDB=0.0398;AF1=0.5;AC1=1;DP4=28,26,14,15;MQ=59;FQ=131;PV4=0.82,2.5e-25,1,0.35 GT:PL:GQ 0/1:158,0,255:99 chr1 150284311 . C T 75 . DP=75;VDB=0.0298;AF1=0.5;AC1=1;DP4=21,23,18,12;MQ=60;FQ=78;PV4=0.35,6.8e-36,1,1 GT:PL:GQ 0/1:105,0,255:99 chr1 150298192 . G A 157 . DP=26;VDB=0.0042;AF1=0.5;AC1=1;DP4=12,1,11,1;MQ=59;FQ=158;PV4=1,1,1,1 GT:PL:GQ 0/1:187,0,189:99 chr1 150300727 . T C 61.1 . DP=11;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,5,2;MQ=60;FQ=-48 GT:PL:GQ 1/1:94,21,0:39 chr1 150319081 . T A 29 . DP=8;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=60;FQ=31.2;PV4=1,5.2e-05,1,1 GT:PL:GQ 0/1:59,0,66:61 chr1 150321486 . G A 53 . DP=10;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,1,4,2;MQ=60;FQ=55.8;PV4=1,0.0021,1,1 GT:PL:GQ 0/1:83,0,96:86 chr1 150337289 . G T 139 . DP=35;VDB=0.0393;AF1=0.5;AC1=1;DP4=12,3,14,5;MQ=60;FQ=142;PV4=1,1.9e-10,1,0.25 GT:PL:GQ 0/1:169,0,232:99 chr1 150415631 . T G 94 . DP=16;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,0,6,0;MQ=60;FQ=97;PV4=1,0.12,1,1 GT:PL:GQ 0/1:124,0,154:99 chr1 150416913 . A G 45 . DP=16;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,7,0,8;MQ=60;FQ=48;PV4=1,4.2e-08,1,1 GT:PL:GQ 0/1:75,0,134:78 chr1 150429944 . A G 225 . DP=97;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,24,20,31;MQ=60;FQ=225;PV4=0.42,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 150432802 . G A 113 . DP=56;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,22,4,26;MQ=60;FQ=116;PV4=1,9.9e-21,0.18,1 GT:PL:GQ 0/1:143,0,250:99 chr1 150437215 . A G 209 . DP=29;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,14,4,9;MQ=59;FQ=203;PV4=0.36,0.5,1,1 GT:PL:GQ 0/1:239,0,231:99 chr1 150445819 . A G 13.9 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr1 150468842 . A G 11.3 . DP=11;VDB=0.0099;AF1=0.5;AC1=1;DP4=4,1,6,0;MQ=60;FQ=14.2;PV4=0.45,4.9e-11,1,1 GT:PL:GQ 0/1:41,0,124:43 chr1 150470296 . G A 36 . DP=6;VDB=0.0014;AF1=0.5016;AC1=1;DP4=0,1,1,3;MQ=60;FQ=-6.18;PV4=1,0.0072,1,0.16 GT:PL:GQ 0/1:66,0,22:25 chr1 150477061 . C T 145 . DP=49;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,11,9,17;MQ=60;FQ=148;PV4=0.38,2.7e-14,1,1 GT:PL:GQ 0/1:175,0,255:99 chr1 150481982 . C T 5.46 . DP=15;VDB=0.0022;AF1=0.4999;AC1=1;DP4=10,1,3,1;MQ=60;FQ=7.8;PV4=0.48,0.00014,1,1 GT:PL:GQ 0/1:34,0,185:34 chr1 150482255 . A G 225 . DP=90;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,28,21,30;MQ=60;FQ=225;PV4=0.18,0.36,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 150482738 . G A 139 . DP=50;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,14,5,20;MQ=60;FQ=142;PV4=0.13,4.2e-16,1,0.31 GT:PL:GQ 0/1:169,0,255:99 chr1 150483355 . C T 225 . DP=46;VDB=0.0271;AF1=0.5;AC1=1;DP4=16,7,16,6;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 150483840 . C T 49.3 . DP=7;VDB=0.0263;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:82,15,0:27 chr1 150484987 . G A 174 . DP=128;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,51,20,39;MQ=59;FQ=177;PV4=0.23,5.6e-25,0.46,1 GT:PL:GQ 0/1:204,0,255:99 chr1 150522471 . CTG CTGTG 214 . INDEL;DP=38;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,28,9;MQ=59;FQ=-146 GT:PL:GQ 1/1:255,111,0:99 chr1 150526044 . G C 211 . DP=136;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,60,68;MQ=59;FQ=-282 GT:PL:GQ 1/1:244,255,0:99 chr1 150526406 . C T 162 . DP=51;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,17,8,17;MQ=60;FQ=165;PV4=1,1.5e-07,1,1 GT:PL:GQ 0/1:192,0,255:99 chr1 150528090 . gacaca gACACacaca 90.5 . INDEL;DP=35;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,17,0,6;MQ=56;FQ=93.5;PV4=0.55,1,0.0023,1 GT:PL:GQ 0/1:128,0,255:99 chr1 150529322 . T TAA 214 . INDEL;DP=11;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-67.5 GT:PL:GQ 1/1:255,33,0:63 chr1 150530548 . C G 210 . DP=39;VDB=0.0298;AF1=0.5;AC1=1;DP4=17,5,12,4;MQ=59;FQ=213;PV4=1,1,1,0.23 GT:PL:GQ 0/1:240,0,255:99 chr1 150531008 . T C 222 . DP=51;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,33,12;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 150531050 . G A 225 . DP=70;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,13,17,10;MQ=60;FQ=225;PV4=0.8,0.072,0.12,1 GT:PL:GQ 0/1:255,0,255:99 chr1 150531170 . C T 222 . DP=70;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,22,46;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr1 150531380 . T C 41 . DP=7;VDB=0.0004;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=57;FQ=17.1;PV4=1,0.011,0.29,1 GT:PL:GQ 0/1:71,0,44:47 chr1 150550019 . TA TAA 214 . INDEL;DP=22;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,2,19;MQ=60;FQ=-97.5 GT:PL:GQ 1/1:255,63,0:99 chr1 150552042 . G A 103 . DP=26;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,7,5,11;MQ=60;FQ=106;PV4=1,6e-10,1,0.44 GT:PL:GQ 0/1:133,0,170:99 chr1 150600181 . C T 124 . DP=17;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,8,0,9;MQ=60;FQ=111;PV4=1,1,1,0.34 GT:PL:GQ 0/1:154,0,138:99 chr1 150666797 . G A 5.47 . DP=4;VDB=0.0040;AF1=0.5007;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-4.44;PV4=1,0.077,1,1 GT:PL:GQ 0/1:34,0,25:29 chr1 150671243 . AC A 43.5 . INDEL;DP=7;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,1,1,2;MQ=60;FQ=46.5;PV4=0.49,0.0026,1,0.031 GT:PL:GQ 0/1:81,0,121:84 chr1 150679033 . G A 225 . DP=98;VDB=0.0399;AF1=0.5;AC1=1;DP4=33,24,26,12;MQ=60;FQ=225;PV4=0.39,0.18,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 150679358 . C T 54 . DP=7;VDB=0.0143;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=57;FQ=40.9;PV4=1,0.23,1,1 GT:PL:GQ 0/1:84,0,68:71 chr1 150680988 . A T 11.1 . DP=2;VDB=0.0176;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr1 150686633 . A T 38 . DP=20;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,4,0,11;MQ=60;FQ=41;PV4=0.11,4e-10,1,0.31 GT:PL:GQ 0/1:68,0,145:71 chr1 150727539 . G A 144 . DP=90;VDB=0.0345;AF1=0.5;AC1=1;DP4=28,24,23,15;MQ=59;FQ=147;PV4=0.67,1.7e-25,0.41,1 GT:PL:GQ 0/1:174,0,255:99 chr1 150730184 . C A 4.13 . DP=4;VDB=0.0186;AF1=0.4998;AC1=1;DP4=2,0,2,0;MQ=60;FQ=6.19;PV4=1,0.022,1,1 GT:PL:GQ 0/1:32,0,56:31 chr1 150730279 . A G 55 . DP=44;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,2,21,2;MQ=60;FQ=58;PV4=1,2.6e-25,1,0.4 GT:PL:GQ 0/1:85,0,238:88 chr1 150737220 . A G 225 . DP=94;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,30,13,26;MQ=60;FQ=225;PV4=0.51,0.21,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 150771703 . T C 222 . DP=107;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,71,33;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 150779755 . C T 173 . DP=102;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,58,43;MQ=60;FQ=-282 GT:PL:GQ 1/1:206,255,0:99 chr1 150801466 . T C 127 . DP=14;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,2;MQ=60;FQ=-66 GT:PL:GQ 1/1:160,39,0:75 chr1 150802272 . AT A 163 . INDEL;DP=27;VDB=0.0140;AF1=0.5;AC1=1;DP4=13,2,10,2;MQ=59;FQ=166;PV4=1,1,0.14,0.33 GT:PL:GQ 0/1:201,0,234:99 chr1 150804429 . A C 47 . DP=25;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,11,0,13;MQ=60;FQ=50;PV4=1,2.2e-13,1,1 GT:PL:GQ 0/1:77,0,158:80 chr1 150808889 . C G 225 . DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,15,11,18;MQ=60;FQ=216;PV4=0.34,0.3,1,0.29 GT:PL:GQ 0/1:255,0,243:99 chr1 150825511 . C T 7.8 . DP=8;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=10.4;PV4=1,4.5e-07,1,0.05 GT:PL:GQ 0/1:37,0,100:39 chr1 150923774 . T A 77 . DP=27;VDB=0.0190;AF1=0.5;AC1=1;DP4=13,4,7,3;MQ=59;FQ=80;PV4=1,2.5e-10,1,1 GT:PL:GQ 0/1:107,0,255:99 chr1 150938571 . G A 9.52 . DP=15;VDB=0.0190;AF1=0.5;AC1=1;DP4=10,0,4,1;MQ=60;FQ=12.3;PV4=0.33,2.7e-06,1,0.32 GT:PL:GQ 0/1:39,0,161:41 chr1 150938616 . G A 219 . DP=30;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,21,8;MQ=60;FQ=-114 GT:PL:GQ 1/1:252,87,0:99 chr1 150939744 . C A 89 . DP=21;VDB=0.0393;AF1=0.5;AC1=1;DP4=1,6,3,8;MQ=60;FQ=92;PV4=1,3e-08,1,1 GT:PL:GQ 0/1:119,0,147:99 chr1 150940143 . T C 225 . DP=38;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,6,16,4;MQ=60;FQ=225;PV4=0.47,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 150940357 . G T 44 . DP=10;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,2,2,5;MQ=60;FQ=17.1;PV4=1,0.0001,1,1 GT:PL:GQ 0/1:74,0,44:47 chr1 150940358 . C T 52 . DP=10;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,2,2,5;MQ=60;FQ=15.1;PV4=1,0.00036,1,1 GT:PL:GQ 0/1:82,0,42:45 chr1 150940625 . T G 217 . DP=37;VDB=0.0216;AF1=0.5;AC1=1;DP4=14,5,12,5;MQ=60;FQ=218;PV4=1,1,1,1 GT:PL:GQ 0/1:247,0,250:99 chr1 150941381 . C T 3.54 . DP=4;VDB=0.0155;AF1=0.4998;AC1=1;DP4=2,0,2,0;MQ=60;FQ=5.46;PV4=1,0.0023,1,1 GT:PL:GQ 0/1:31,0,62:30 chr1 150944541 . A G 9.31 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr1 150958977 . T C 225 . DP=32;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,9,6,13;MQ=59;FQ=208;PV4=1,0.39,0.21,1 GT:PL:GQ 0/1:255,0,235:99 chr1 150969992 . T C 146 . DP=95;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,28,19,22;MQ=60;FQ=149;PV4=1,4e-21,1,0.45 GT:PL:GQ 0/1:176,0,255:99 chr1 150970577 . G T 115 . DP=28;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,22,4;MQ=60;FQ=-105 GT:PL:GQ 1/1:148,78,0:99 chr1 150974162 . G A 222 . DP=44;VDB=0.0271;AF1=1;AC1=2;DP4=1,0,31,11;MQ=59;FQ=-138;PV4=1,0.15,1,0.27 GT:PL:GQ 1/1:255,111,0:99 chr1 150974971 . T A 225 . DP=69;VDB=0.0271;AF1=0.5;AC1=1;DP4=17,18,19,14;MQ=60;FQ=225;PV4=0.48,0.013,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr1 150975108 . T C 206 . DP=36;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,8,26;MQ=60;FQ=-129 GT:PL:GQ 1/1:239,102,0:99 chr1 150981267 . G C 99 . DP=42;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,11,6,19;MQ=60;FQ=102;PV4=1,1.5e-12,1,1 GT:PL:GQ 0/1:129,0,195:99 chr1 150990913 . G C 106 . DP=34;VDB=0.0343;AF1=0.5;AC1=1;DP4=22,1,11,0;MQ=60;FQ=109;PV4=1,0.27,1,0.0049 GT:PL:GQ 0/1:136,0,217:99 chr1 150997940 . T C 23 . DP=9;VDB=0.0003;AF1=0.5;AC1=1;DP4=4,1,4,0;MQ=60;FQ=26;PV4=1,7.1e-06,1,0.074 GT:PL:GQ 0/1:53,0,132:56 chr1 151006539 . C A 222 . DP=56;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,24,29;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr1 151009984 . C G 169 . DP=15;VDB=0.0216;AF1=0.5;AC1=1;DP4=5,1,5,3;MQ=60;FQ=111;PV4=0.58,1,1,1 GT:PL:GQ 0/1:199,0,138:99 chr1 151011543 . G A 163 . DP=58;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,17,9,21;MQ=60;FQ=166;PV4=1,1.3e-13,1,0.15 GT:PL:GQ 0/1:193,0,255:99 chr1 151015868 . G A 146 . DP=116;VDB=0.0399;AF1=0.5;AC1=1;DP4=27,36,17,31;MQ=60;FQ=149;PV4=0.44,2.2e-43,1,1 GT:PL:GQ 0/1:176,0,255:99 chr1 151019180 . A G 103 . DP=64;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,5,25;MQ=59;FQ=-117 GT:PL:GQ 1/1:136,90,0:99 chr1 151026815 . C T 222 . DP=65;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,23,39;MQ=59;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 151028234 . G T 222 . DP=53;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,8,40;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 151039609 . A G 56.1 . DP=7;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:89,18,0:33 chr1 151062957 . G A 225 . DP=143;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,40,23,54;MQ=60;FQ=225;PV4=0.37,0.077,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 151104950 . G A 107 . DP=24;VDB=0.0384;AF1=0.5;AC1=1;DP4=9,2,8,4;MQ=59;FQ=110;PV4=0.64,7.8e-05,0.18,0.19 GT:PL:GQ 0/1:137,0,182:99 chr1 151105824 . C G 47.1 . DP=7;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-45 GT:PL:GQ 1/1:80,18,0:33 chr1 151108137 . T G 184 . DP=118;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,64,43;MQ=60;FQ=-282 GT:PL:GQ 1/1:217,255,0:99 chr1 151114882 . CT CTT 209 . INDEL;DP=19;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,18,1;MQ=60;FQ=-91.5 GT:PL:GQ 1/1:250,57,0:99 chr1 151143166 . C T 205 . DP=28;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,10,2,15;MQ=60;FQ=146;PV4=1,0.38,1,0.34 GT:PL:GQ 0/1:235,0,173:99 chr1 151144891 . C T 74 . DP=24;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,7,1,14;MQ=59;FQ=77;PV4=0.53,1.3e-09,1,1 GT:PL:GQ 0/1:104,0,171:99 chr1 151146186 . C G 122 . DP=18;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,2,16;MQ=60;FQ=-81 GT:PL:GQ 1/1:155,54,0:99 chr1 151149601 . A G 56 . DP=3;VDB=0.0107;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:88,9,0:16 chr1 151205303 . A G 14.2 . DP=7;VDB=0.0196;AF1=0.5;AC1=1;DP4=0,5,0,2;MQ=60;FQ=17.1;PV4=1,0.2,1,0.12 GT:PL:GQ 0/1:44,0,118:47 chr1 151209063 . C T 225 . DP=84;VDB=0.0365;AF1=0.5;AC1=1;DP4=29,12,20,22;MQ=60;FQ=225;PV4=0.045,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 151210789 . C T 182 . DP=140;VDB=0.0399;AF1=0.5;AC1=1;DP4=33,30,30,41;MQ=60;FQ=185;PV4=0.3,2.2e-53,0.17,1 GT:PL:GQ 0/1:212,0,255:99 chr1 151212399 . CCT CCTTCT 72.4 . INDEL;DP=5;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,2,1;MQ=42;FQ=-43.5 GT:PL:GQ 1/1:112,9,0:16 chr1 151237589 . TCCCCCCC TCCCCCC 13.7 . INDEL;DP=19;VDB=0.0345;AF1=0.5002;AC1=1;DP4=7,1,7,3;MQ=60;FQ=-5.15;PV4=0.59,0.21,1,0.23 GT:PL:GQ 0/1:51,0,31:34 chr1 151238222 . G A 91 . DP=10;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,2,0,7;MQ=57;FQ=21;PV4=1,0.087,0.31,0.2 GT:PL:GQ 0/1:121,0,48:51 chr1 151239051 . T C 164 . DP=42;VDB=0.0393;AF1=0.5;AC1=1;DP4=4,11,8,16;MQ=60;FQ=167;PV4=0.73,8.2e-08,1,1 GT:PL:GQ 0/1:194,0,218:99 chr1 151239570 . C T 172 . DP=20;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,7,3,6;MQ=60;FQ=168;PV4=1,1,1,1 GT:PL:GQ 0/1:202,0,196:99 chr1 151254041 . T C 184 . DP=41;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,5,16,2;MQ=59;FQ=187;PV4=0.44,1,0.43,0.42 GT:PL:GQ 0/1:214,0,255:99 chr1 151280400 . C G 18.1 . DP=7;VDB=0.0030;AF1=0.5;AC1=1;DP4=1,3,1,2;MQ=60;FQ=21;PV4=1,0.00053,1,0.29 GT:PL:GQ 0/1:48,0,118:51 chr1 151288172 . G A 185 . DP=35;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,8,8,4;MQ=60;FQ=188;PV4=1,1,1,1 GT:PL:GQ 0/1:215,0,255:99 chr1 151288391 . A G 222 . DP=71;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,32,34;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr1 151316161 . G A 211 . DP=32;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,22,8;MQ=60;FQ=-117 GT:PL:GQ 1/1:244,90,0:99 chr1 151337788 . A G 31 . DP=17;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,8,0,8;MQ=60;FQ=34;PV4=1,8.5e-05,1,1 GT:PL:GQ 0/1:61,0,166:64 chr1 151372138 . G A 222 . DP=26;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,8,18;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 151373200 . T C 219 . DP=33;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,13,20;MQ=60;FQ=-126 GT:PL:GQ 1/1:252,99,0:99 chr1 151377248 . T C 116 . DP=20;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,17,3;MQ=60;FQ=-87 GT:PL:GQ 1/1:149,60,0:99 chr1 151379250 . G A 71.1 . DP=7;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:104,21,0:39 chr1 151381320 . GAAAAAAA GAAAAAA 107 . INDEL;DP=45;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,8,35;MQ=59;FQ=-164 GT:PL:GQ 1/1:148,129,0:99 chr1 151384711 . A G 139 . DP=20;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,15,5;MQ=60;FQ=-87 GT:PL:GQ 1/1:172,60,0:99 chr1 151384733 . G A 165 . DP=31;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,8;MQ=59;FQ=-111 GT:PL:GQ 1/1:198,84,0:99 chr1 151395782 . T C 152 . DP=10;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:185,27,0:51 chr1 151396037 . A C 179 . DP=69;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,55;MQ=60;FQ=-229 GT:PL:GQ 1/1:212,202,0:99 chr1 151400942 . A C 91 . DP=18;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,17;MQ=60;FQ=-81 GT:PL:GQ 1/1:124,54,0:99 chr1 151402045 . A G 144 . DP=38;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,33,3;MQ=60;FQ=-135 GT:PL:GQ 1/1:177,108,0:99 chr1 151499635 . C T 70 . DP=11;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:103,33,0:63 chr1 151501698 . A G 3.98 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr1 151501737 . T C 26.1 . DP=6;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,6,0;MQ=56;FQ=-45 GT:PL:GQ 1/1:59,18,0:32 chr1 151502427 . C T 163 . DP=19;VDB=0.0019;AF1=0.5;AC1=1;DP4=6,2,4,5;MQ=60;FQ=138;PV4=0.33,0.39,1,1 GT:PL:GQ 0/1:193,0,165:99 chr1 151512802 . G T 62 . DP=16;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,0,8,2;MQ=60;FQ=64.4;PV4=0.5,6.9e-05,1,0.27 GT:PL:GQ 0/1:92,0,100:94 chr1 151534142 . A C 62 . DP=19;VDB=0.0393;AF1=0.5;AC1=1;DP4=10,1,6,2;MQ=60;FQ=65;PV4=0.55,1.2e-08,1,0.43 GT:PL:GQ 0/1:92,0,190:95 chr1 151538784 . ttctctctctctctctctctc ttctctctctctctctctc 213 . INDEL;DP=17;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,4,3,6;MQ=60;FQ=156;PV4=1,3.2e-13,1,1 GT:PL:GQ 0/1:251,0,191:99 chr1 151542099 . G T 198 . DP=42;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,25,15;MQ=60;FQ=-147 GT:PL:GQ 1/1:231,120,0:99 chr1 151546931 . A G 29.5 . DP=4;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:62,12,0:21 chr1 151551320 . G A 222 . DP=24;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,9,13;MQ=59;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 151553918 . C T 32.8 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:64,6,0:10 chr1 151554503 . T C 222 . DP=28;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,24,4;MQ=59;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 151634512 . ATTTTTTT ATTTTTTTT 25.5 . INDEL;DP=20;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,18,1;MQ=60;FQ=-91.5 GT:PL:GQ 1/1:66,57,0:79 chr1 151634803 . G A 56 . DP=22;VDB=0.0019;AF1=1;AC1=2;DP4=0,1,0,20;MQ=59;FQ=-65;PV4=1,0.031,1,1 GT:PL:GQ 1/1:89,38,0:73 chr1 151675618 . T C 222 . DP=29;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,19,8;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 151700189 . CC CCTGC 207 . INDEL;DP=12;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,10;MQ=40;FQ=-67.5 GT:PL:GQ 1/1:248,33,0:63 chr1 151740666 . T C 163 . DP=59;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,38;MQ=60;FQ=-196 GT:PL:GQ 1/1:196,169,0:99 chr1 151742580 . gac g 58 . INDEL;DP=10;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,2,2;MQ=34;FQ=-46.5 GT:PL:GQ 1/1:98,12,0:21 chr1 151742588 . C G 137 . DP=15;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,10,4;MQ=38;FQ=-69 GT:PL:GQ 1/1:170,42,0:81 chr1 151747043 . C T 222 . DP=84;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,41,39;MQ=59;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr1 151747733 . C T 57 . DP=3;VDB=0.0098;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:89,9,0:16 chr1 151747799 . G A 7.77 . DP=5;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:39,9,0:11 chr1 151748425 . C A 147 . DP=20;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,14;MQ=59;FQ=-78 GT:PL:GQ 1/1:180,51,0:99 chr1 151751081 . G A 98 . DP=14;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,11,3;MQ=60;FQ=-69 GT:PL:GQ 1/1:131,42,0:81 chr1 151754112 . T C 212 . DP=43;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,9,32;MQ=59;FQ=-150 GT:PL:GQ 1/1:245,123,0:99 chr1 151780177 . C T 151 . DP=20;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,3,16;MQ=58;FQ=-84 GT:PL:GQ 1/1:184,57,0:99 chr1 151789647 . T G 198 . DP=26;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,17,8;MQ=52;FQ=-102 GT:PL:GQ 1/1:231,75,0:99 chr1 151811226 . G A 20 . DP=3;VDB=0.0219;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:52,9,0:15 chr1 151820298 . G C 222 . DP=28;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,10;MQ=60;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 151820324 . T C 177 . DP=23;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,12;MQ=60;FQ=-93 GT:PL:GQ 1/1:210,66,0:99 chr1 151825991 . G T 222 . DP=45;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,28;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 151862661 . G A 222 . DP=45;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,36,7;MQ=59;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 151867560 . G A 222 . DP=42;VDB=0.0392;AF1=1;AC1=2;DP4=1,0,31,8;MQ=55;FQ=-126;PV4=1,1,1,0.24 GT:PL:GQ 1/1:255,99,0:99 chr1 151881885 . A C 85 . DP=10;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:118,27,0:51 chr1 152085505 . A C 222 . DP=71;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,32,37;MQ=60;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr1 152185762 . C G 222 . DP=39;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,2,34;MQ=47;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 152185768 . T G 135 . DP=29;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,2,24;MQ=41;FQ=-105 GT:PL:GQ 1/1:168,78,0:99 chr1 152185774 . A G 128 . DP=17;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,2,15;MQ=28;FQ=-78 GT:PL:GQ 1/1:161,51,0:99 chr1 152185780 . G A 107 . DP=15;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,13;MQ=28;FQ=-66 GT:PL:GQ 1/1:140,39,0:75 chr1 152185790 . T C 50.1 . DP=6;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,0,6;MQ=27;FQ=-45 GT:PL:GQ 1/1:83,18,0:33 chr1 152185792 . G A 41.1 . DP=6;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,0,6;MQ=27;FQ=-45 GT:PL:GQ 1/1:74,18,0:33 chr1 152185796 . A G 39.1 . DP=6;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,0,6;MQ=27;FQ=-45 GT:PL:GQ 1/1:72,18,0:33 chr1 152185823 . C T 13 . DP=2;VDB=0.0129;AF1=1;AC1=2;DP4=0,0,0,2;MQ=29;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr1 152185833 . C T 13.9 . DP=2;VDB=0.0129;AF1=1;AC1=2;DP4=0,0,0,2;MQ=29;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr1 152191709 . C G 222 . DP=59;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,16,40;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 152191879 . G A 222 . DP=34;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,20,14;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 152192114 . C T 222 . DP=40;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,27;MQ=57;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 152192293 . C T 82.1 . DP=7;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,3,3;MQ=53;FQ=-45 GT:PL:GQ 1/1:115,18,0:33 chr1 152192631 . C T 222 . DP=96;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,48,44;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 152192687 . T C 208 . DP=94;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,34,54;MQ=59;FQ=-282 GT:PL:GQ 1/1:241,255,0:99 chr1 152192825 . C T 166 . DP=52;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,11,13,11;MQ=60;FQ=169;PV4=0.78,1.5e-10,1,1 GT:PL:GQ 0/1:196,0,255:99 chr1 152192978 . T C 222 . DP=105;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,46,53;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 152193052 . A G 222 . DP=72;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,17,50;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr1 152193121 . G T 222 . DP=34;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,26;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 152193286 . G T 82 . DP=11;VDB=0.0001;AF1=0.5001;AC1=1;DP4=2,0,6,3;MQ=60;FQ=8.65;PV4=1,8e-06,1,0.48 GT:PL:GQ 0/1:112,0,35:38 chr1 152193291 . G T 137 . DP=13;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,8,5;MQ=60;FQ=-66 GT:PL:GQ 1/1:170,39,0:75 chr1 152193544 . A G 183 . DP=60;VDB=0.0392;AF1=1;AC1=2;DP4=1,0,29,30;MQ=59;FQ=-178;PV4=1,9.6e-07,1,0.22 GT:PL:GQ 1/1:216,151,0:99 chr1 152193547 . G A 188 . DP=60;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,30,28;MQ=59;FQ=-202 GT:PL:GQ 1/1:221,175,0:99 chr1 152193851 . C T 222 . DP=106;VDB=0.0399;AF1=1;AC1=2;DP4=0,1,33,65;MQ=60;FQ=-282;PV4=1,0.48,0.46,0.23 GT:PL:GQ 1/1:255,255,0:99 chr1 152193990 . A G 68 . DP=19;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,19;MQ=60;FQ=-84 GT:PL:GQ 1/1:101,57,0:99 chr1 152195728 . ATTTTTTTTTTT ATTTTTTTTTT,ATTTTTTTTT 50.5 . INDEL;DP=69;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,48;MQ=57;FQ=-195 GT:PL:GQ 1/1:91,160,0,92,128,86:99 chr1 152281621 . T C 98 . DP=101;VDB=0.0384;AF1=0.5;AC1=1;DP4=40,17,29,11;MQ=56;FQ=101;PV4=0.82,3.7e-33,0.38,1 GT:PL:GQ 0/1:128,0,255:99 chr1 152285076 . CACTGACTG CACTG 217 . INDEL;DP=72;VDB=0.0216;AF1=0.5;AC1=1;DP4=20,20,11,17;MQ=57;FQ=217;PV4=0.46,1.1e-05,0.00035,1 GT:PL:GQ 0/1:255,0,255:99 chr1 152329369 . C G 225 . DP=203;VDB=0.0399;AF1=0.5;AC1=1;DP4=61,47,45,45;MQ=60;FQ=225;PV4=0.39,0.22,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr1 152384833 . T C 45 . DP=17;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,5,1,10;MQ=60;FQ=48;PV4=1,2.9e-10,1,1 GT:PL:GQ 0/1:75,0,96:78 chr1 152484129 . G A 225 . DP=83;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,22,12,32;MQ=59;FQ=225;PV4=0.17,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 152484260 . A T 150 . DP=22;VDB=0.0164;AF1=0.5;AC1=1;DP4=3,8,4,5;MQ=60;FQ=153;PV4=0.64,0.25,1,1 GT:PL:GQ 0/1:180,0,209:99 chr1 152487979 . C T 22 . DP=4;VDB=0.0192;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=23.8;PV4=1,0.026,1,1 GT:PL:GQ 0/1:52,0,57:54 chr1 152538358 . G C 37 . DP=25;VDB=0.0164;AF1=0.5;AC1=1;DP4=13,1,11,0;MQ=59;FQ=40;PV4=1,5.4e-09,1,1 GT:PL:GQ 0/1:67,0,191:70 chr1 152552461 . C A 81 . DP=27;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,12,1,11;MQ=59;FQ=84;PV4=0.61,5e-10,1,1 GT:PL:GQ 0/1:111,0,243:99 chr1 152681543 . T C 123 . DP=72;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,60,6;MQ=56;FQ=-226 GT:PL:GQ 1/1:156,199,0:99 chr1 152681680 . CAGCTCTGGGGGCTG CAGCTCTGGGGGCTGCTGTAGCTCTGGGGGCTG 161 . INDEL;DP=107;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,38,7,14;MQ=54;FQ=164;PV4=0.78,1,1e-20,1 GT:PL:GQ 0/1:199,0,255:99 chr1 152732106 . A T 154 . DP=85;VDB=0.0164;AF1=0.5;AC1=1;DP4=32,11,33,8;MQ=59;FQ=157;PV4=0.61,1.5e-24,1,1 GT:PL:GQ 0/1:184,0,255:99 chr1 152749091 . C T 142 . DP=13;VDB=0.0343;AF1=0.5;AC1=1;DP4=3,1,3,5;MQ=58;FQ=56;PV4=0.55,1,0.25,0.064 GT:PL:GQ 0/1:172,0,83:86 chr1 152882952 . G C 40.8 . DP=2;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,1,1;MQ=50;FQ=-33 GT:PL:GQ 1/1:72,6,0:10 chr1 152944594 . C T 225 . DP=96;VDB=0.0392;AF1=0.5;AC1=1;DP4=24,25,19,26;MQ=60;FQ=225;PV4=0.54,0.034,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 152957832 . C A 90 . DP=38;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,9,11,9;MQ=59;FQ=93;PV4=0.5,1.6e-15,0.2,0.33 GT:PL:GQ 0/1:120,0,255:99 chr1 152957887 . G A 141 . DP=66;VDB=0.0399;AF1=0.5;AC1=1;DP4=23,8,29,5;MQ=60;FQ=144;PV4=0.36,1.1e-18,1,1 GT:PL:GQ 0/1:171,0,255:99 chr1 152975495 . G A 117 . DP=49;VDB=0.0373;AF1=0.5;AC1=1;DP4=16,8,18,6;MQ=60;FQ=120;PV4=0.75,3.3e-13,1,0.36 GT:PL:GQ 0/1:147,0,255:99 chr1 152975715 . C T 10.4 . DP=10;VDB=0.0098;AF1=0.5;AC1=1;DP4=4,2,2,1;MQ=60;FQ=13.2;PV4=1,0.02,1,1 GT:PL:GQ 0/1:40,0,147:42 chr1 152975763 . C A 36 . DP=11;VDB=0.0022;AF1=0.5;AC1=1;DP4=6,1,4,0;MQ=60;FQ=39;PV4=1,1,1,0.06 GT:PL:GQ 0/1:66,0,136:69 chr1 152975829 . A G 91 . DP=39;VDB=0.0271;AF1=0.5;AC1=1;DP4=20,6,9,4;MQ=60;FQ=94;PV4=0.7,9.3e-09,1,1 GT:PL:GQ 0/1:121,0,255:99 chr1 152975941 . C G 164 . DP=60;VDB=0.0393;AF1=0.5;AC1=1;DP4=19,14,13,12;MQ=60;FQ=167;PV4=0.79,1.2e-12,0.13,0.34 GT:PL:GQ 0/1:194,0,255:99 chr1 153004721 . A T 35 . DP=15;VDB=0.0118;AF1=0.5;AC1=1;DP4=8,0,7,0;MQ=59;FQ=38;PV4=1,7.8e-10,0.15,0.24 GT:PL:GQ 0/1:65,0,145:68 chr1 153004778 . C T 115 . DP=47;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,8,15,5;MQ=60;FQ=118;PV4=0.75,1.4e-15,1,1 GT:PL:GQ 0/1:145,0,255:99 chr1 153004809 . T C 177 . DP=54;VDB=0.0393;AF1=0.5;AC1=1;DP4=16,9,15,13;MQ=59;FQ=180;PV4=0.58,4.1e-13,0.092,0.0095 GT:PL:GQ 0/1:207,0,255:99 chr1 153004848 . T C 91 . DP=61;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,16,12,15;MQ=58;FQ=94;PV4=0.61,2.5e-21,0.038,1 GT:PL:GQ 0/1:121,0,255:99 chr1 153004853 . C T 101 . DP=57;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,15,11,13;MQ=57;FQ=104;PV4=0.79,2e-19,0.014,1 GT:PL:GQ 0/1:131,0,255:99 chr1 153004983 . C T 109 . DP=40;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,7,12,9;MQ=54;FQ=112;PV4=1,1e-16,0.00074,1 GT:PL:GQ 0/1:139,0,255:99 chr1 153005156 . C T 225 . DP=85;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,26,14,33;MQ=60;FQ=225;PV4=0.81,0.022,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 153233510 . A G 74 . DP=15;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,6,1,7;MQ=60;FQ=77;PV4=1,0.00024,1,1 GT:PL:GQ 0/1:104,0,139:99 chr1 153233701 . A C 65 . DP=3;VDB=0.0202;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:97,9,0:16 chr1 153233991 . actctggcggcggctctggc aCTCTGGCGGCGGctctggcggcggctctggc 19.3 . INDEL;DP=4;VDB=0.0309;AF1=1;AC1=2;DP4=0,0,1,1;MQ=29;FQ=-40.5 GT:PL:GQ 1/1:58,6,0:10 chr1 153271524 . C T 39 . DP=17;VDB=0.0216;AF1=0.5;AC1=1;DP4=8,0,9,0;MQ=60;FQ=42;PV4=1,8.2e-13,1,1 GT:PL:GQ 0/1:69,0,148:72 chr1 153277423 . C T 100 . DP=31;VDB=0.0398;AF1=0.5;AC1=1;DP4=11,1,9,8;MQ=60;FQ=103;PV4=0.043,1.4e-14,1,1 GT:PL:GQ 0/1:130,0,186:99 chr1 153277660 . A T 37 . DP=16;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,5,1,8;MQ=58;FQ=40;PV4=1,8.6e-06,1,0.18 GT:PL:GQ 0/1:67,0,121:70 chr1 153279462 . TAAGA TA 164 . INDEL;DP=20;VDB=0.0140;AF1=0.5;AC1=1;DP4=10,2,8,0;MQ=56;FQ=167;PV4=0.49,0.31,0.01,1 GT:PL:GQ 0/1:202,0,255:99 chr1 153282892 . C T 43 . DP=14;VDB=0.0008;AF1=0.5;AC1=1;DP4=4,0,10,0;MQ=60;FQ=44.8;PV4=1,1.6e-05,1,1 GT:PL:GQ 0/1:73,0,78:75 chr1 153283004 . C T 147 . DP=86;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,18,22,18;MQ=60;FQ=150;PV4=0.66,5.5e-31,1,1 GT:PL:GQ 0/1:177,0,255:99 chr1 153314153 . C A 44 . DP=16;VDB=0.0359;AF1=0.5;AC1=1;DP4=6,2,4,2;MQ=60;FQ=47;PV4=1,6.4e-05,1,0.37 GT:PL:GQ 0/1:74,0,174:77 chr1 153314347 . C T 13.2 . DP=3;VDB=0.0165;AF1=0.5004;AC1=1;DP4=0,1,0,2;MQ=60;FQ=3.47;PV4=1,0.37,1,1 GT:PL:GQ 0/1:43,0,28:31 chr1 153315467 . TAAGA TAAGAAGA 156 . INDEL;DP=8;VDB=0.0004;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=60;FQ=95.5;PV4=1,1,1,1 GT:PL:GQ 0/1:194,0,130:99 chr1 153315579 . A G 59 . DP=40;VDB=0.0244;AF1=0.5;AC1=1;DP4=19,5,9,5;MQ=59;FQ=62;PV4=0.45,6.6e-21,0.097,1 GT:PL:GQ 0/1:89,0,255:92 chr1 153315784 . T C 48 . DP=12;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,6,1,5;MQ=60;FQ=51;PV4=1,0.0037,1,0.45 GT:PL:GQ 0/1:78,0,121:81 chr1 153317723 . T C 122 . DP=54;VDB=0.0244;AF1=0.5;AC1=1;DP4=16,16,17,5;MQ=60;FQ=125;PV4=0.052,3.8e-15,0.12,1 GT:PL:GQ 0/1:152,0,255:99 chr1 153320334 . T C 76 . DP=54;VDB=0.0216;AF1=0.5;AC1=1;DP4=25,5,14,9;MQ=60;FQ=79;PV4=0.11,1.8e-26,1,1 GT:PL:GQ 0/1:106,0,255:99 chr1 153320372 . T G 225 . DP=70;VDB=0.0393;AF1=0.5;AC1=1;DP4=23,8,22,15;MQ=59;FQ=225;PV4=0.3,0.47,0.097,0.35 GT:PL:GQ 0/1:255,0,255:99 chr1 153362788 . T C 185 . DP=30;VDB=0.0384;AF1=0.5;AC1=1;DP4=7,11,7,4;MQ=60;FQ=188;PV4=0.26,1,1,0.36 GT:PL:GQ 0/1:215,0,255:99 chr1 153410822 . C A 102 . DP=22;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,9,2,10;MQ=60;FQ=105;PV4=1,3.6e-06,1,1 GT:PL:GQ 0/1:132,0,167:99 chr1 153412392 . T G 165 . DP=30;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,13,1,12;MQ=60;FQ=168;PV4=0.35,1,1,1 GT:PL:GQ 0/1:195,0,255:99 chr1 153431406 . C G 196 . DP=27;VDB=0.0053;AF1=0.5;AC1=1;DP4=10,2,8,5;MQ=59;FQ=185;PV4=0.38,0.0062,0.17,0.49 GT:PL:GQ 0/1:226,0,212:99 chr1 153431561 . T C 131 . DP=81;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,25,8,31;MQ=59;FQ=134;PV4=0.14,4.8e-20,0.13,1 GT:PL:GQ 0/1:161,0,255:99 chr1 153535862 . A G 9.52 . DP=46;VDB=0.0118;AF1=0.5;AC1=1;DP4=13,5,7,1;MQ=56;FQ=12.3;PV4=0.63,9.8e-06,0.26,1 GT:PL:GQ 0/1:39,0,213:41 chr1 153587308 . C T 114 . DP=19;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,16,2;MQ=60;FQ=-81 GT:PL:GQ 1/1:147,54,0:99 chr1 153588208 . G A 76 . DP=17;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,16,1;MQ=60;FQ=-78 GT:PL:GQ 1/1:109,51,0:99 chr1 153588279 . G A 177 . DP=50;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,36,14;MQ=60;FQ=-178 GT:PL:GQ 1/1:210,151,0:99 chr1 153600778 . G A 42 . DP=9;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:75,24,0:45 chr1 153604029 . C T 138 . DP=63;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,24,31;MQ=60;FQ=-193 GT:PL:GQ 1/1:171,166,0:99 chr1 153604112 . G A 222 . DP=56;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,26;MQ=59;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr1 153609039 . T C 142 . DP=21;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,4;MQ=60;FQ=-87 GT:PL:GQ 1/1:175,60,0:99 chr1 153636472 . T C 73 . DP=24;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,22,0;MQ=60;FQ=-93 GT:PL:GQ 1/1:106,66,0:99 chr1 153636860 . A G 210 . DP=104;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,72,27;MQ=60;FQ=-282 GT:PL:GQ 1/1:243,255,0:99 chr1 153637617 . G A 108 . DP=15;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,13,2;MQ=60;FQ=-72 GT:PL:GQ 1/1:141,45,0:87 chr1 153642835 . G C 158 . DP=9;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:191,24,0:45 chr1 153656352 . T G 114 . DP=6;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:147,18,0:33 chr1 153660514 . ACCCCCCC ACCCCCC 6.75 . INDEL;DP=5;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,5,0;MQ=55;FQ=-49.5 GT:PL:GQ 1/1:46,15,0:17 chr1 153661374 . CGG CG 214 . INDEL;DP=32;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,25,7;MQ=60;FQ=-131 GT:PL:GQ 1/1:255,96,0:99 chr1 153743234 . T C 127 . DP=39;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,7,12,8;MQ=59;FQ=130;PV4=1,7.9e-13,0.17,1 GT:PL:GQ 0/1:157,0,255:99 chr1 153743289 . C G 147 . DP=35;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,12,8,9;MQ=60;FQ=150;PV4=0.48,8.3e-13,1,0.21 GT:PL:GQ 0/1:177,0,255:99 chr1 153743317 . G A 199 . DP=23;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,10,3,9;MQ=59;FQ=151;PV4=0.59,1,0.18,1 GT:PL:GQ 0/1:229,0,178:99 chr1 153745380 . G A 55 . DP=19;VDB=0.0053;AF1=0.5;AC1=1;DP4=7,1,11,0;MQ=59;FQ=58;PV4=0.42,1.1e-07,0.2,1 GT:PL:GQ 0/1:85,0,161:88 chr1 153790501 . C T 32 . DP=19;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,4,7,0;MQ=57;FQ=35;PV4=0.12,0.0011,1,1 GT:PL:GQ 0/1:62,0,208:65 chr1 153904574 . T C 31 . DP=11;VDB=0.0204;AF1=0.5;AC1=1;DP4=5,3,2,1;MQ=60;FQ=34;PV4=1,0.13,1,1 GT:PL:GQ 0/1:61,0,194:64 chr1 153906397 . A G 214 . DP=40;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,10,28;MQ=60;FQ=-141 GT:PL:GQ 1/1:247,114,0:99 chr1 153907278 . cctgctgctgctgctgctgctgctgctgttgctgctgctgctgctg cctgctgctgctgctgctgttgctgctgctgctgctg 51.5 . INDEL;DP=25;VDB=0.0025;AF1=0.5;AC1=1;DP4=15,0,10,0;MQ=51;FQ=54.5;PV4=1,1,4.8e-11,1 GT:PL:GQ 0/1:89,0,255:92 chr1 153909069 . G C 26 . DP=24;VDB=0.0190;AF1=0.5;AC1=1;DP4=13,4,6,1;MQ=59;FQ=29;PV4=1,5.6e-08,1,1 GT:PL:GQ 0/1:56,0,255:59 chr1 153913684 . C A 3.54 . DP=12;VDB=0.0313;AF1=0.4998;AC1=1;DP4=5,1,4,0;MQ=60;FQ=5.47;PV4=1,0.00014,1,1 GT:PL:GQ 0/1:31,0,131:30 chr1 153913699 . T G 130 . DP=14;VDB=0.0373;AF1=0.5;AC1=1;DP4=5,0,7,1;MQ=60;FQ=82;PV4=1,0.063,1,0.43 GT:PL:GQ 0/1:160,0,109:99 chr1 153913770 . A G 149 . DP=36;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,22,12;MQ=60;FQ=-129 GT:PL:GQ 1/1:182,102,0:99 chr1 153920564 . A G 49 . DP=11;VDB=0.0081;AF1=0.5;AC1=1;DP4=4,0,5,2;MQ=60;FQ=51.7;PV4=0.49,8e-05,1,1 GT:PL:GQ 0/1:79,0,90:82 chr1 153921483 . ACCCC ACCC 99.5 . INDEL;DP=30;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,7,4,9;MQ=60;FQ=102;PV4=0.26,1.1e-06,1,1 GT:PL:GQ 0/1:137,0,167:99 chr1 153926078 . T C 23 . DP=7;VDB=0.0263;AF1=0.5;AC1=1;DP4=1,2,1,3;MQ=60;FQ=26;PV4=1,0.0078,1,1 GT:PL:GQ 0/1:53,0,77:56 chr1 153941514 . C T 118 . DP=58;VDB=0.0398;AF1=0.5;AC1=1;DP4=15,7,15,17;MQ=60;FQ=121;PV4=0.17,3.7e-23,0.21,1 GT:PL:GQ 0/1:148,0,255:99 chr1 153954674 . T C 222 . DP=26;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,11,15;MQ=59;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 153964396 . CA CAAA 214 . INDEL;DP=111;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,86,24;MQ=59;FQ=-290 GT:PL:GQ 1/1:255,255,0:99 chr1 153974621 . C T 73 . DP=8;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=46;PV4=1,1,1,1 GT:PL:GQ 0/1:103,0,73:76 chr1 153994647 . C T 225 . DP=38;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,5,11,6;MQ=59;FQ=225;PV4=0.49,0.081,1,0.39 GT:PL:GQ 0/1:255,0,255:99 chr1 154026642 . A G 164 . DP=32;VDB=0.0042;AF1=0.5;AC1=1;DP4=17,1,13,1;MQ=60;FQ=167;PV4=1,1,1,1 GT:PL:GQ 0/1:194,0,208:99 chr1 154029450 . G C 118 . DP=20;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,10,0,8;MQ=60;FQ=121;PV4=1,1,1,1 GT:PL:GQ 0/1:148,0,164:99 chr1 154061855 . T G 222 . DP=31;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,10;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 154108387 . G A 222 . DP=74;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,29,43;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr1 154141908 . A G 64 . DP=48;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,26,3,12;MQ=59;FQ=67;PV4=0.32,4.2e-20,1,1 GT:PL:GQ 0/1:94,0,250:97 chr1 154144041 . C T 220 . DP=28;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,13,5,8;MQ=58;FQ=203;PV4=0.2,0.24,0.46,0.13 GT:PL:GQ 0/1:250,0,230:99 chr1 154186918 . G C 225 . DP=56;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,15,10,11;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 154192143 . G A 18.1 . DP=5;VDB=0.0011;AF1=0.5025;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-7.78;PV4=1,0.036,1,1 GT:PL:GQ 0/1:48,0,20:23 chr1 154218639 . TTCAGTCA TTCA 121 . INDEL;DP=9;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=55;FQ=123;PV4=1,0.13,0.097,0.41 GT:PL:GQ 0/1:159,0,163:99 chr1 154227239 . C A 41 . DP=27;VDB=0.0140;AF1=0.5;AC1=1;DP4=15,0,10,0;MQ=60;FQ=44;PV4=1,3.9e-13,1,1 GT:PL:GQ 0/1:71,0,179:74 chr1 154228287 . T C 144 . DP=62;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,24,6,25;MQ=60;FQ=147;PV4=1,1.5e-22,1,0.34 GT:PL:GQ 0/1:174,0,255:99 chr1 154245142 . T G 77 . DP=20;VDB=0.0118;AF1=0.5;AC1=1;DP4=8,3,3,5;MQ=60;FQ=80;PV4=0.18,3.4e-07,1,1 GT:PL:GQ 0/1:107,0,222:99 chr1 154285052 . G A 27 . DP=17;VDB=0.0325;AF1=0.5;AC1=1;DP4=4,8,2,3;MQ=56;FQ=30;PV4=1,0.00016,0.0007,0.31 GT:PL:GQ 0/1:57,0,233:60 chr1 154293675 . G A 126 . DP=31;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,8,7,7;MQ=60;FQ=129;PV4=1,4.4e-11,1,1 GT:PL:GQ 0/1:156,0,255:99 chr1 154294656 . T C 70 . DP=40;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,14,2,21;MQ=57;FQ=73;PV4=1,3.5e-18,1,0.39 GT:PL:GQ 0/1:100,0,216:99 chr1 154295592 . C T 166 . DP=57;VDB=0.0345;AF1=0.5;AC1=1;DP4=20,6,14,17;MQ=60;FQ=169;PV4=0.029,2.7e-22,0.18,1 GT:PL:GQ 0/1:196,0,255:99 chr1 154303976 . T C 175 . DP=24;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,5,4,6;MQ=59;FQ=178;PV4=0.41,0.17,0.12,0.3 GT:PL:GQ 0/1:205,0,255:99 chr1 154305010 . A G 54.1 . DP=8;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:87,21,0:39 chr1 154305190 . G C 167 . DP=56;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,18,11,17;MQ=60;FQ=170;PV4=0.78,4.4e-22,1,0.18 GT:PL:GQ 0/1:197,0,255:99 chr1 154310048 . C G 225 . DP=61;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,17,11,24;MQ=60;FQ=225;PV4=1,0.41,0.2,1 GT:PL:GQ 0/1:255,0,255:99 chr1 154316996 . G A 88 . DP=73;VDB=0.0400;AF1=0.5;AC1=1;DP4=18,18,10,25;MQ=60;FQ=91;PV4=0.09,1.7e-25,0.16,0.33 GT:PL:GQ 0/1:118,0,255:99 chr1 154317153 . C T 129 . DP=56;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,16,7,16;MQ=60;FQ=132;PV4=0.26,1.5e-12,1,1 GT:PL:GQ 0/1:159,0,255:99 chr1 154317281 . G A 36 . DP=16;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,8,0,6;MQ=59;FQ=39;PV4=0.5,6.9e-05,1,0.0021 GT:PL:GQ 0/1:66,0,200:69 chr1 154318172 . A G 81 . DP=34;VDB=0.0216;AF1=0.5;AC1=1;DP4=12,4,16,1;MQ=60;FQ=84;PV4=0.17,4.1e-18,1,0.49 GT:PL:GQ 0/1:111,0,255:99 chr1 154321072 . A G 175 . DP=9;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:208,27,0:51 chr1 154401972 . T C 207 . DP=57;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,16,39;MQ=60;FQ=-193 GT:PL:GQ 1/1:240,166,0:99 chr1 154407713 . T C 191 . DP=12;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:224,33,0:63 chr1 154426970 . A C 222 . DP=22;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,12,9;MQ=59;FQ=-64;PV4=1,0.28,1,1 GT:PL:GQ 1/1:255,37,0:71 chr1 154437896 . T C 186 . DP=26;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,26;MQ=60;FQ=-105 GT:PL:GQ 1/1:219,78,0:99 chr1 154442960 . G A 112 . DP=44;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,3,38;MQ=59;FQ=-150 GT:PL:GQ 1/1:145,123,0:99 chr1 154459197 . C G 75 . DP=12;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:108,33,0:63 chr1 154474131 . C G 186 . DP=39;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,7,31;MQ=59;FQ=-141 GT:PL:GQ 1/1:219,114,0:99 chr1 154479657 . C CAT 214 . INDEL;DP=14;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,12,2;MQ=51;FQ=-76.5 GT:PL:GQ 1/1:255,42,0:81 chr1 154479670 . C T 178 . DP=18;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,14,4;MQ=53;FQ=-81 GT:PL:GQ 1/1:211,54,0:99 chr1 154492702 . G A 166 . DP=43;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,37,4;MQ=60;FQ=-150 GT:PL:GQ 1/1:199,123,0:99 chr1 154493721 . T C 134 . DP=17;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,14,3;MQ=60;FQ=-78 GT:PL:GQ 1/1:167,51,0:99 chr1 154514331 . C A 73 . DP=8;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:106,24,0:45 chr1 154516477 . G A 172 . DP=119;VDB=0.0392;AF1=0.5;AC1=1;DP4=24,43,21,28;MQ=60;FQ=175;PV4=0.45,1.4e-26,1,0.5 GT:PL:GQ 0/1:202,0,255:99 chr1 154516571 . T C 222 . DP=75;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,21,50;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr1 154523215 . C T 59 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:91,9,0:16 chr1 154523990 . G T 86 . DP=34;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,11,7,4;MQ=60;FQ=89;PV4=0.72,1.7e-08,1,1 GT:PL:GQ 0/1:116,0,255:99 chr1 154524973 . A G 130 . DP=32;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,7,6,10;MQ=60;FQ=133;PV4=0.71,0.028,1,1 GT:PL:GQ 0/1:160,0,200:99 chr1 154528086 . T C 143 . DP=15;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,11;MQ=60;FQ=-72 GT:PL:GQ 1/1:176,45,0:87 chr1 154557685 . C T 199 . DP=40;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,30,8;MQ=59;FQ=-141 GT:PL:GQ 1/1:232,114,0:99 chr1 154561261 . G C 39.5 . DP=4;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:72,12,0:21 chr1 154562624 . CG C 12.7 . INDEL;DP=17;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,0,2,1;MQ=57;FQ=15.6;PV4=0.33,1,0.085,0.0032 GT:PL:GQ 0/1:50,0,71:53 chr1 154573967 . T C 172 . DP=129;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,45,74;MQ=59;FQ=-282;PV4=1,1.2e-09,0.44,0.24 GT:PL:GQ 1/1:205,255,0:99 chr1 154574820 . T C 222 . DP=59;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,33,24;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr1 154575040 . C T 222 . DP=36;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,21;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 154600372 . A G 110 . DP=13;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:143,36,0:69 chr1 154744807 . C G 225 . DP=94;VDB=0.0164;AF1=0.5;AC1=1;DP4=9,39,7,38;MQ=60;FQ=225;PV4=0.79,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 154744852 . A G 184 . DP=36;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,16,2,15;MQ=60;FQ=183;PV4=1,0.23,1,1 GT:PL:GQ 0/1:214,0,213:99 chr1 154832290 . C T 214 . DP=45;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,19,2,21;MQ=59;FQ=204;PV4=1,1,1,1 GT:PL:GQ 0/1:244,0,231:99 chr1 154832304 . T C 54 . DP=36;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,17,1,16;MQ=59;FQ=57;PV4=1,1.8e-19,0.16,1 GT:PL:GQ 0/1:84,0,215:87 chr1 154832322 . A C 138 . DP=29;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,2,26;MQ=59;FQ=-111 GT:PL:GQ 1/1:171,84,0:99 chr1 154842243 . A C 3.98 . DP=2;VDB=0.0143;AF1=1;AC1=2;DP4=0,0,2,0;MQ=47;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr1 154842244 . A T 3.98 . DP=2;VDB=0.0143;AF1=1;AC1=2;DP4=0,0,2,0;MQ=47;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr1 154917701 . A G 225 . DP=28;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,11,4,11;MQ=60;FQ=168;PV4=0.65,1,1,1 GT:PL:GQ 0/1:255,0,195:99 chr1 154919080 . C T 84 . DP=46;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,17,6,13;MQ=59;FQ=87;PV4=1,2e-20,1,1 GT:PL:GQ 0/1:114,0,255:99 chr1 154987526 . C T 104 . DP=84;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,15,22,20;MQ=59;FQ=107;PV4=0.38,4.1e-29,1,1 GT:PL:GQ 0/1:134,0,255:99 chr1 154988957 . A G 222 . DP=61;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,35;MQ=59;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 155001929 . T C 33 . DP=12;VDB=0.0392;AF1=0.5;AC1=1;DP4=0,6,0,6;MQ=60;FQ=36;PV4=1,3e-05,1,1 GT:PL:GQ 0/1:63,0,120:66 chr1 155006091 . A G 111 . DP=105;VDB=0.0298;AF1=0.5;AC1=1;DP4=41,19,24,17;MQ=60;FQ=114;PV4=0.4,5.9e-23,1,1 GT:PL:GQ 0/1:141,0,255:99 chr1 155006999 . C T 86 . DP=74;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,17,18,10;MQ=60;FQ=89;PV4=0.81,2.9e-25,1,1 GT:PL:GQ 0/1:116,0,255:99 chr1 155019710 . A C 95 . DP=36;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,5,10,4;MQ=60;FQ=98;PV4=1,5.7e-12,1,1 GT:PL:GQ 0/1:125,0,255:99 chr1 155026871 . G T 197 . DP=37;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,10,9,5;MQ=60;FQ=200;PV4=0.74,1,1,1 GT:PL:GQ 0/1:227,0,255:99 chr1 155026942 . A C 222 . DP=33;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,10,23;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 155028522 . G A 165 . DP=92;VDB=0.0345;AF1=0.5;AC1=1;DP4=30,19,26,13;MQ=60;FQ=168;PV4=0.66,1.3e-22,1,1 GT:PL:GQ 0/1:195,0,255:99 chr1 155030557 . A C 174 . DP=130;VDB=0.0399;AF1=0.5;AC1=1;DP4=34,34,30,29;MQ=59;FQ=177;PV4=1,5.5e-35,1,1 GT:PL:GQ 0/1:204,0,255:99 chr1 155031031 . C T 127 . DP=51;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,25,6,15;MQ=60;FQ=130;PV4=0.15,9.9e-17,1,1 GT:PL:GQ 0/1:157,0,255:99 chr1 155031376 . C T 84 . DP=28;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,8,3,12;MQ=60;FQ=87;PV4=0.41,7.3e-12,1,1 GT:PL:GQ 0/1:114,0,237:99 chr1 155033317 . T C 163 . DP=37;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,5,30;MQ=60;FQ=-132 GT:PL:GQ 1/1:196,105,0:99 chr1 155057499 . A G 95 . DP=21;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,20,1;MQ=60;FQ=-90 GT:PL:GQ 1/1:128,63,0:99 chr1 155105882 . T G 112 . DP=60;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,16,20,10;MQ=60;FQ=115;PV4=0.19,1.5e-26,1,1 GT:PL:GQ 0/1:142,0,255:99 chr1 155106550 . A G 222 . DP=55;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,11,42;MQ=59;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr1 155142210 . A G 118 . DP=99;VDB=0.0398;AF1=0.5;AC1=1;DP4=22,31,17,28;MQ=60;FQ=121;PV4=0.84,1.1e-37,1,0.042 GT:PL:GQ 0/1:148,0,255:99 chr1 155142229 . G A 148 . DP=88;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,29,13,20;MQ=60;FQ=151;PV4=0.66,4.8e-23,1,1 GT:PL:GQ 0/1:178,0,255:99 chr1 155148520 . G A 225 . DP=58;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,14,13,14;MQ=60;FQ=225;PV4=1,0.0003,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr1 155148781 . G A 20.1 . DP=5;VDB=0.0059;AF1=0.5102;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-13.2;PV4=1,0.043,1,1 GT:PL:GQ 0/1:50,0,14:17 chr1 155149718 . G A 174 . DP=145;VDB=0.0345;AF1=0.5;AC1=1;DP4=20,48,19,56;MQ=60;FQ=177;PV4=0.71,1.2e-44,1,1 GT:PL:GQ 0/1:204,0,255:99 chr1 155160813 . G C 133 . DP=64;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,18,18,8;MQ=60;FQ=136;PV4=0.2,1.3e-19,1,1 GT:PL:GQ 0/1:163,0,255:99 chr1 155162067 . C T 90 . DP=38;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,12,10,5;MQ=59;FQ=93;PV4=0.18,7.2e-10,1,1 GT:PL:GQ 0/1:120,0,255:99 chr1 155178782 . A T 138 . DP=19;VDB=0.0398;AF1=0.5;AC1=1;DP4=1,5,5,5;MQ=59;FQ=56;PV4=0.31,1,0.23,1 GT:PL:GQ 0/1:168,0,83:86 chr1 155181843 . G T 87 . DP=11;VDB=0.0014;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=60;FQ=64;PV4=1,1,1,1 GT:PL:GQ 0/1:117,0,91:94 chr1 155182164 . C T 89 . DP=44;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,5,14,4;MQ=51;FQ=92;PV4=1,1.1e-12,1,1 GT:PL:GQ 0/1:119,0,255:99 chr1 155184975 . A G 109 . DP=97;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,22,25,29;MQ=50;FQ=112;PV4=0.84,9.5e-39,1,1 GT:PL:GQ 0/1:139,0,255:99 chr1 155186729 . T C 41 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,8,2,9;MQ=56;FQ=44;PV4=0.64,5.8e-10,0.24,1 GT:PL:GQ 0/1:71,0,230:74 chr1 155186742 . G A 72 . DP=22;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,7,1,9;MQ=53;FQ=75;PV4=0.16,1.8e-07,0.47,0.29 GT:PL:GQ 0/1:102,0,229:99 chr1 155205669 . G T 222 . DP=80;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,27,47;MQ=51;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr1 155257818 . C T 73 . DP=107;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,54,14,23;MQ=60;FQ=76;PV4=0.03,2.3e-35,1,1 GT:PL:GQ 0/1:103,0,255:99 chr1 155294274 . A G 222 . DP=43;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,5,34;MQ=59;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 155294772 . A G 135 . DP=13;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,7,5;MQ=60;FQ=-63 GT:PL:GQ 1/1:168,36,0:69 chr1 155313047 . T C 130 . DP=22;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,19,2;MQ=60;FQ=-90 GT:PL:GQ 1/1:163,63,0:99 chr1 155408635 . T C 222 . DP=83;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,39,39;MQ=60;FQ=-262 GT:PL:GQ 1/1:255,235,0:99 chr1 155532316 . T C 158 . DP=34;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,22,11;MQ=52;FQ=-126 GT:PL:GQ 1/1:191,99,0:99 chr1 155532325 . T C 160 . DP=34;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,22,11;MQ=51;FQ=-126 GT:PL:GQ 1/1:193,99,0:99 chr1 155532332 . T C 213 . DP=33;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,23,9;MQ=49;FQ=-123 GT:PL:GQ 1/1:246,96,0:99 chr1 155532341 . T C 133 . DP=37;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,21,10;MQ=52;FQ=-120 GT:PL:GQ 1/1:166,93,0:99 chr1 155581757 . A G 77.1 . DP=6;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,6,0;MQ=29;FQ=-45 GT:PL:GQ 1/1:110,18,0:33 chr1 155618415 . CTTTT CTTT 190 . INDEL;DP=52;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,35,15;MQ=47;FQ=-186 GT:PL:GQ 1/1:231,151,0:99 chr1 155755097 . G A 222 . DP=64;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,15,45;MQ=60;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr1 155785578 . CAACTAAC CAAC 214 . INDEL;DP=40;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,25,11;MQ=56;FQ=-143 GT:PL:GQ 1/1:255,108,0:99 chr1 155823002 . T C 64 . DP=18;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,18,0;MQ=59;FQ=-81 GT:PL:GQ 1/1:97,54,0:99 chr1 155837865 . G C 222 . DP=78;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,56,19;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr1 155838267 . T C 222 . DP=74;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,55,14;MQ=60;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr1 155850558 . T C 176 . DP=16;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,16;MQ=60;FQ=-75 GT:PL:GQ 1/1:209,48,0:93 chr1 155870416 . G A 134 . DP=57;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,13,28;MQ=60;FQ=-150 GT:PL:GQ 1/1:167,123,0:99 chr1 155880573 . C G,T 198 . DP=52;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,9,41;MQ=60;FQ=-175 GT:PL:GQ 1/1:231,148,0,228,128,225:99 chr1 155880760 . C CA 15.6 . INDEL;DP=8;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-58.5 GT:PL:GQ 1/1:56,24,0:36 chr1 155891045 . A C 114 . DP=22;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,21,1;MQ=59;FQ=-93 GT:PL:GQ 1/1:147,66,0:99 chr1 155891877 . cag cAGag 127 . INDEL;DP=7;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:167,12,0:21 chr1 155899020 . A T 131 . DP=92;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,35,16;MQ=60;FQ=-181 GT:PL:GQ 1/1:164,154,0:99 chr1 155903408 . C T 91 . DP=35;VDB=0.0298;AF1=1;AC1=2;DP4=1,0,19,5;MQ=58;FQ=-73;PV4=1,2.8e-07,1,0.24 GT:PL:GQ 1/1:124,46,0:89 chr1 155904177 . T C 222 . DP=185;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,111,70;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 155912486 . T C 222 . DP=79;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,16,55;MQ=60;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr1 155917880 . T A 222 . DP=76;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,31,43;MQ=60;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr1 155928232 . T C 111 . DP=18;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,15;MQ=60;FQ=-75 GT:PL:GQ 1/1:144,48,0:93 chr1 155928242 . C T 90 . DP=13;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,12;MQ=60;FQ=-66 GT:PL:GQ 1/1:123,39,0:75 chr1 155931368 . G A 75 . DP=9;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,6,2;MQ=60;FQ=-51 GT:PL:GQ 1/1:108,24,0:45 chr1 155932847 . G A 225 . DP=47;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,9,13,10;MQ=60;FQ=225;PV4=0.77,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 155955076 . A G 222 . DP=27;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,16,9;MQ=57;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 155982231 . G T 79 . DP=52;VDB=0.0244;AF1=0.5;AC1=1;DP4=27,6,17,2;MQ=60;FQ=82;PV4=0.69,2.3e-14,1,0.42 GT:PL:GQ 0/1:109,0,255:99 chr1 156011444 . T C 208 . DP=36;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,9,7,6;MQ=56;FQ=211;PV4=1,1,1,1 GT:PL:GQ 0/1:238,0,255:99 chr1 156107398 . C G 65 . DP=26;VDB=0.0359;AF1=0.5;AC1=1;DP4=12,4,5,4;MQ=59;FQ=68;PV4=0.39,1.1e-06,1,0.25 GT:PL:GQ 0/1:95,0,253:98 chr1 156132909 . GCACA GCA 214 . INDEL;DP=19;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,13;MQ=59;FQ=-88.5 GT:PL:GQ 1/1:255,54,0:99 chr1 156146218 . C T 181 . DP=54;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,29,22;MQ=58;FQ=-181 GT:PL:GQ 1/1:214,154,0:99 chr1 156169610 . A G 175 . DP=36;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,3,11,3;MQ=60;FQ=178;PV4=0.67,0.089,1,0.26 GT:PL:GQ 0/1:205,0,252:99 chr1 156182710 . T C 27 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:59,9,0:16 chr1 156202173 . A G 131 . DP=51;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,15,8,19;MQ=60;FQ=134;PV4=1,1.3e-18,1,0.18 GT:PL:GQ 0/1:161,0,255:99 chr1 156206121 . G A 100 . DP=41;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,8,9,5;MQ=60;FQ=103;PV4=0.73,2e-10,1,0.26 GT:PL:GQ 0/1:130,0,255:99 chr1 156247907 . C T 63 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:95,9,0:16 chr1 156255833 . G C 46.3 . DP=6;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:79,15,0:27 chr1 156279210 . T C 91 . DP=39;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,37;MQ=60;FQ=-138 GT:PL:GQ 1/1:124,111,0:99 chr1 156287360 . C T 149 . DP=16;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,3,12;MQ=60;FQ=-72 GT:PL:GQ 1/1:182,45,0:87 chr1 156303527 . C A,T 35.3 . DP=6;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-42 GT:PL:GQ 1/1:91,38,23,61,0,58:27 chr1 156347131 . G A 159 . DP=104;VDB=0.0365;AF1=0.5;AC1=1;DP4=40,21,23,16;MQ=60;FQ=162;PV4=0.53,8e-21,0.11,1 GT:PL:GQ 0/1:189,0,255:99 chr1 156351066 . C A 86 . DP=67;VDB=0.0271;AF1=0.5;AC1=1;DP4=29,4,31,2;MQ=60;FQ=89;PV4=0.67,1.9e-17,1,1 GT:PL:GQ 0/1:116,0,255:99 chr1 156354293 . A G 225 . DP=119;VDB=0.0398;AF1=0.5;AC1=1;DP4=25,34,26,30;MQ=60;FQ=225;PV4=0.71,0.44,1,0.35 GT:PL:GQ 0/1:255,0,255:99 chr1 156354347 . TCCCCCCCC TCCCCCCC 16.6 . INDEL;DP=96;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,26,13,26;MQ=60;FQ=18.1;PV4=0.65,5.8e-09,1,1 GT:PL:GQ 0/1:54,0,58:55 chr1 156354367 . A G 225 . DP=77;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,25,12,27;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 156446242 . C A 143 . DP=34;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,26,7;MQ=59;FQ=-126 GT:PL:GQ 1/1:176,99,0:99 chr1 156446450 . C T 144 . DP=17;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,3,13;MQ=60;FQ=-75 GT:PL:GQ 1/1:177,48,0:93 chr1 156446903 . T C 222 . DP=43;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,24,16;MQ=59;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 156450740 . G A 222 . DP=16;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,5,11;MQ=59;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 156452870 . G A 99 . DP=19;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,16,1;MQ=60;FQ=-78 GT:PL:GQ 1/1:132,51,0:99 chr1 156453096 . G T 84 . DP=52;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,13,7,14;MQ=59;FQ=87;PV4=1,2.5e-14,1,0.3 GT:PL:GQ 0/1:114,0,255:99 chr1 156496188 . A G 49 . DP=9;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:82,27,0:51 chr1 156509552 . C G 127 . DP=32;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,30,2;MQ=60;FQ=-123 GT:PL:GQ 1/1:160,96,0:99 chr1 156520173 . T A 222 . DP=45;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,22,20;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 156526234 . C T 96 . DP=12;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:129,33,0:63 chr1 156526387 . C G 222 . DP=27;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,10,16;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 156526444 . T C 127 . DP=22;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,4,16;MQ=60;FQ=-87 GT:PL:GQ 1/1:160,60,0:99 chr1 156531871 . A G 222 . DP=27;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,5,22;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 156532344 . T G 162 . DP=42;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,37,5;MQ=60;FQ=-153 GT:PL:GQ 1/1:195,126,0:99 chr1 156532908 . C A 142 . DP=60;VDB=0.0393;AF1=1;AC1=2;DP4=1,0,27,23;MQ=59;FQ=-147;PV4=1,6.4e-05,0.42,1 GT:PL:GQ 1/1:175,120,0:99 chr1 156532977 . T C 175 . DP=53;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,30;MQ=60;FQ=-184 GT:PL:GQ 1/1:208,157,0:99 chr1 156534525 . A C 67.3 . DP=6;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:100,15,0:27 chr1 156534539 . G A 70.5 . DP=4;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:103,12,0:21 chr1 156536123 . T C 18 . DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:50,9,0:15 chr1 156536133 . A G 34.1 . DP=7;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:67,18,0:33 chr1 156536221 . G C 196 . DP=41;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,11;MQ=59;FQ=-147 GT:PL:GQ 1/1:229,120,0:99 chr1 156536251 . T C 196 . DP=46;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,26,17;MQ=59;FQ=-156 GT:PL:GQ 1/1:229,129,0:99 chr1 156536353 . A G 222 . DP=47;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,19,28;MQ=59;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 156536480 . T C 59 . DP=15;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,11;MQ=56;FQ=-63 GT:PL:GQ 1/1:92,36,0:69 chr1 156539154 . T C 114 . DP=19;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,17,2;MQ=58;FQ=-84 GT:PL:GQ 1/1:147,57,0:99 chr1 156542215 . TCCC TCC 108 . INDEL;DP=31;VDB=0.0140;AF1=0.5;AC1=1;DP4=15,4,10,2;MQ=59;FQ=111;PV4=1,0.00099,1,0.46 GT:PL:GQ 0/1:146,0,221:99 chr1 156551848 . A G 95 . DP=13;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,2,9;MQ=56;FQ=-60 GT:PL:GQ 1/1:128,33,0:63 chr1 156553762 . A C 41.3 . DP=5;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:74,15,0:27 chr1 156556321 . G A 177 . DP=50;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,36,8;MQ=60;FQ=-159 GT:PL:GQ 1/1:210,132,0:99 chr1 156561651 . G C 94 . DP=13;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:127,39,0:75 chr1 156562008 . G A 102 . DP=11;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,9;MQ=60;FQ=-57 GT:PL:GQ 1/1:135,30,0:57 chr1 156562143 . G A 46.3 . DP=5;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:79,15,0:27 chr1 156563375 . G A 168 . DP=56;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,15,38;MQ=60;FQ=-187 GT:PL:GQ 1/1:201,160,0:99 chr1 156563726 . A C 222 . DP=41;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,26,15;MQ=60;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 156563813 . G A 149 . DP=33;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,7,25;MQ=59;FQ=-123 GT:PL:GQ 1/1:182,96,0:99 chr1 156563852 . C T 94 . DP=20;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,20;MQ=59;FQ=-87 GT:PL:GQ 1/1:127,60,0:99 chr1 156563898 . T C 12.7 . DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:45,12,0:18 chr1 156564640 . G A 158 . DP=12;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:191,36,0:69 chr1 156564922 . C T 222 . DP=148;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,82,52;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 156565049 . AA AACA 214 . INDEL;DP=175;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,77,93;MQ=59;FQ=-290 GT:PL:GQ 1/1:255,255,0:99 chr1 156567496 . C T 16.1 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:48,9,0:15 chr1 156594656 . C A 89 . DP=12;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:122,33,0:63 chr1 156626340 . C G 222 . DP=14;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,3,11;MQ=60;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr1 156626920 . T C,A 188 . DP=87;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,32,47;MQ=60;FQ=-262 GT:PL:GQ 1/1:221,235,0,217,211,214:99 chr1 156639753 . G A 222 . DP=85;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,50,29;MQ=59;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr1 156640156 . G A 194 . DP=104;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,57,41;MQ=60;FQ=-282 GT:PL:GQ 1/1:227,255,0:99 chr1 156640678 . G A 147 . DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,10;MQ=60;FQ=-69 GT:PL:GQ 1/1:180,42,0:81 chr1 156641746 . C G 104 . DP=21;VDB=0.0373;AF1=0.5;AC1=1;DP4=5,5,6,5;MQ=60;FQ=107;PV4=1,0.011,1,1 GT:PL:GQ 0/1:134,0,192:99 chr1 156646668 . A G 222 . DP=18;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,13,3;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 156705593 . G C 222 . DP=51;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,28,20;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 156706559 . A G 100 . DP=16;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:133,45,0:87 chr1 156707524 . C T 72 . DP=55;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,24,3,18;MQ=60;FQ=75;PV4=0.72,2e-14,1,1 GT:PL:GQ 0/1:102,0,255:99 chr1 156707775 . T G 133 . DP=27;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,21,4;MQ=58;FQ=-102 GT:PL:GQ 1/1:166,75,0:99 chr1 156708244 . C T 225 . DP=154;VDB=0.0380;AF1=0.5;AC1=1;DP4=42,39,37,33;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 156713512 . C T 157 . DP=21;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,13,8;MQ=60;FQ=-90 GT:PL:GQ 1/1:190,63,0:99 chr1 156713558 . G A 9.52 . DP=19;VDB=0.0359;AF1=0.5;AC1=1;DP4=7,5,3,2;MQ=60;FQ=12.3;PV4=1,1.7e-06,1,1 GT:PL:GQ 0/1:39,0,243:41 chr1 156737969 . C T 94 . DP=48;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,8,11,9;MQ=59;FQ=97;PV4=1,2.1e-12,0.16,1 GT:PL:GQ 0/1:124,0,255:99 chr1 156752048 . C G 163 . DP=47;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,23,21;MQ=59;FQ=-159 GT:PL:GQ 1/1:196,132,0:99 chr1 156760887 . C A 184 . DP=72;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,16,24,12;MQ=60;FQ=187;PV4=0.23,2.7e-23,1,0.0077 GT:PL:GQ 0/1:214,0,255:99 chr1 156784982 . T C 150 . DP=13;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,3;MQ=58;FQ=-66 GT:PL:GQ 1/1:183,39,0:75 chr1 156785617 . G A 222 . DP=89;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,64,20;MQ=58;FQ=-280 GT:PL:GQ 1/1:255,253,0:99 chr1 156785762 . AG A 214 . INDEL;DP=102;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,35,64;MQ=57;FQ=-290 GT:PL:GQ 1/1:255,255,0:99 chr1 156785771 . A G 222 . DP=97;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,35,58;MQ=57;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 156785779 . G A 222 . DP=86;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,32,49;MQ=56;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr1 156814027 . G A 87 . DP=35;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,9,7,12;MQ=60;FQ=90;PV4=1,8e-15,1,1 GT:PL:GQ 0/1:117,0,229:99 chr1 156814478 . G A 116 . DP=75;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,18,19,14;MQ=60;FQ=119;PV4=1,1.2e-20,0.14,1 GT:PL:GQ 0/1:146,0,255:99 chr1 156837847 . T C 40 . DP=80;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,26,17,7;MQ=59;FQ=43;PV4=0.14,1.2e-19,0.28,1 GT:PL:GQ 0/1:70,0,255:73 chr1 156845492 . Agtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt AGTGTgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 135 . INDEL;DP=56;VDB=0.0140;AF1=0.5207;AC1=1;DP4=0,1,0,12;MQ=60;FQ=-23.5;PV4=1,1,1,1 GT:PL:GQ 0/1:255,83,94:14 chr1 156848995 . C T 172 . DP=40;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,36,3;MQ=59;FQ=-144 GT:PL:GQ 1/1:205,117,0:99 chr1 156875092 . G A 142 . DP=19;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,13,6;MQ=56;FQ=-84 GT:PL:GQ 1/1:175,57,0:99 chr1 156875097 . G A 222 . DP=25;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,17,8;MQ=56;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 156875107 . C A 222 . DP=27;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,17,10;MQ=56;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 156875985 . G A 169 . DP=49;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,34,13;MQ=58;FQ=-168 GT:PL:GQ 1/1:202,141,0:99 chr1 156877457 . T C 194 . DP=84;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,27,55;MQ=60;FQ=-274 GT:PL:GQ 1/1:227,247,0:99 chr1 156883493 . G A 188 . DP=40;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,3,15,2;MQ=59;FQ=191;PV4=1,0.19,0.14,1 GT:PL:GQ 0/1:218,0,255:99 chr1 156883546 . A G 112 . DP=66;VDB=0.0399;AF1=0.5;AC1=1;DP4=24,10,25,3;MQ=59;FQ=115;PV4=0.12,4.8e-17,0.45,1 GT:PL:GQ 0/1:142,0,255:99 chr1 156884365 . T C 132 . DP=39;VDB=0.0053;AF1=0.5;AC1=1;DP4=21,3,15,0;MQ=60;FQ=135;PV4=0.27,1,1,1 GT:PL:GQ 0/1:162,0,239:99 chr1 156902259 . G A 87 . DP=16;VDB=0.0081;AF1=0.5;AC1=1;DP4=5,1,6,3;MQ=60;FQ=89.9;PV4=0.6,7.9e-08,1,1 GT:PL:GQ 0/1:117,0,135:99 chr1 156907081 . T C 225 . DP=63;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,18,21,5;MQ=60;FQ=225;PV4=0.017,0.37,1,0.31 GT:PL:GQ 0/1:255,0,255:99 chr1 156907115 . T C 108 . DP=65;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,22,19,12;MQ=60;FQ=111;PV4=0.048,2.2e-18,1,1 GT:PL:GQ 0/1:138,0,255:99 chr1 156914240 . Ccattcattcattcattcattcattcattcattca Ccattcattcattcattcattcattcattca 217 . INDEL;DP=22;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,6,3,5;MQ=58;FQ=185;PV4=0.57,1,1,0.17 GT:PL:GQ 0/1:255,0,220:99 chr1 156918137 . C T 225 . DP=66;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,7,25,17;MQ=60;FQ=214;PV4=0.78,1,0.25,1 GT:PL:GQ 0/1:255,0,241:99 chr1 156925448 . G A 116 . DP=40;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,8,11,5;MQ=60;FQ=119;PV4=1,2.3e-12,1,1 GT:PL:GQ 0/1:146,0,255:99 chr1 156939175 . C T 18.1 . DP=8;VDB=0.0108;AF1=0.5;AC1=1;DP4=4,2,0,2;MQ=60;FQ=21;PV4=0.43,1,1,0.33 GT:PL:GQ 0/1:48,0,157:51 chr1 156948956 . ccctcct ccct 70.5 . INDEL;DP=10;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,2,3,0;MQ=56;FQ=73.5;PV4=1,0.09,0.35,1 GT:PL:GQ 0/1:108,0,255:99 chr1 156954267 . C T 72 . DP=19;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,7,1,9;MQ=60;FQ=75;PV4=0.58,9.4e-08,1,0.3 GT:PL:GQ 0/1:102,0,187:99 chr1 157062364 . G A 12.3 . DP=9;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=15.1;PV4=1,1.3e-05,1,1 GT:PL:GQ 0/1:42,0,95:44 chr1 157062696 . G T 80 . DP=25;VDB=0.0343;AF1=0.5;AC1=1;DP4=3,10,4,7;MQ=60;FQ=83;PV4=0.66,2.3e-08,1,0.41 GT:PL:GQ 0/1:110,0,229:99 chr1 157095406 . C T 167 . DP=186;VDB=0.0380;AF1=0.5;AC1=1;DP4=46,51,53,32;MQ=59;FQ=170;PV4=0.053,7.5e-36,1,1 GT:PL:GQ 0/1:197,0,255:99 chr1 157485561 . G A 159 . DP=23;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,13,10;MQ=60;FQ=-96 GT:PL:GQ 1/1:192,69,0:99 chr1 157485720 . T C 37.8 . DP=2;VDB=0.0173;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:69,6,0:10 chr1 157489516 . T G 79 . DP=21;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,8,6,3;MQ=60;FQ=82;PV4=0.2,8.9e-10,1,1 GT:PL:GQ 0/1:109,0,240:99 chr1 157491173 . T A 125 . DP=15;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,1,13;MQ=60;FQ=-69 GT:PL:GQ 1/1:158,42,0:81 chr1 157497263 . T C 114 . DP=37;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,33,1;MQ=60;FQ=-129 GT:PL:GQ 1/1:147,102,0:99 chr1 157508882 . C T 39.8 . DP=3;VDB=0.0089;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:71,6,0:10 chr1 157509025 . C T 206 . DP=55;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,27;MQ=60;FQ=-184 GT:PL:GQ 1/1:239,157,0:99 chr1 157514097 . A G 212 . DP=40;VDB=0.0322;AF1=1;AC1=2;DP4=1,0,25,13;MQ=59;FQ=-128;PV4=1,1,1,1 GT:PL:GQ 1/1:245,101,0:99 chr1 157550066 . T C 225 . DP=120;VDB=0.0400;AF1=0.5;AC1=1;DP4=34,27,32,23;MQ=60;FQ=225;PV4=0.85,0.11,1,0.028 GT:PL:GQ 0/1:255,0,255:99 chr1 157557701 . G A 206 . DP=20;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,0,8,4;MQ=60;FQ=85;PV4=0.25,0.26,1,1 GT:PL:GQ 0/1:236,0,112:99 chr1 157559122 . C T 149 . DP=96;VDB=0.0392;AF1=0.5;AC1=1;DP4=32,20,25,16;MQ=59;FQ=152;PV4=1,3.5e-22,1,1 GT:PL:GQ 0/1:179,0,255:99 chr1 157567751 . A G 113 . DP=28;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,9,5,12;MQ=59;FQ=116;PV4=0.67,5.4e-12,1,1 GT:PL:GQ 0/1:143,0,194:99 chr1 157668390 . T C 78 . DP=54;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,20,3,15;MQ=60;FQ=81;PV4=0.2,1.2e-20,1,1 GT:PL:GQ 0/1:108,0,255:99 chr1 157669668 . G A 100 . DP=11;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=58;FQ=80;PV4=1,1,1,0.16 GT:PL:GQ 0/1:130,0,107:99 chr1 157670290 . C G 92 . DP=62;VDB=0.0399;AF1=0.5;AC1=1;DP4=20,8,17,11;MQ=59;FQ=95;PV4=0.57,5.8e-21,1,1 GT:PL:GQ 0/1:122,0,255:99 chr1 157718283 . A T 45 . DP=31;VDB=0.0008;AF1=0.5;AC1=1;DP4=14,0,14,0;MQ=59;FQ=48;PV4=1,9.1e-14,0.16,0.48 GT:PL:GQ 0/1:75,0,173:78 chr1 157740186 . GTC G 217 . INDEL;DP=40;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,11,6,7;MQ=58;FQ=217;PV4=0.73,1.4e-06,0.0057,1 GT:PL:GQ 0/1:255,0,255:99 chr1 157744142 . A T 155 . DP=31;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,5,12,7;MQ=59;FQ=158;PV4=1,1.1e-13,1,0.22 GT:PL:GQ 0/1:185,0,222:99 chr1 157768000 . G C 54 . DP=23;VDB=0.0305;AF1=0.5;AC1=1;DP4=11,5,5,2;MQ=60;FQ=57;PV4=1,3.3e-06,1,0.2 GT:PL:GQ 0/1:84,0,255:87 chr1 157771880 . C T 189 . DP=96;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,24,30,25;MQ=60;FQ=192;PV4=0.15,7.5e-24,1,1 GT:PL:GQ 0/1:219,0,255:99 chr1 157802979 . C T 146 . DP=44;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,1,21,5;MQ=60;FQ=149;PV4=0.38,1.9e-13,1,0.37 GT:PL:GQ 0/1:176,0,194:99 chr1 157806006 . G A 225 . DP=33;VDB=0.0164;AF1=0.5;AC1=1;DP4=4,12,5,11;MQ=59;FQ=217;PV4=1,1,0.16,1 GT:PL:GQ 0/1:255,0,244:99 chr1 157811392 . G A 98 . DP=59;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,4,25,6;MQ=59;FQ=101;PV4=1,2e-23,0.11,1 GT:PL:GQ 0/1:128,0,255:99 chr1 157963362 . Gcgggctcccgggctcccgggctccc Gcgggctcccgggctccc 3.8 . INDEL;DP=5;VDB=0.0006;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=50;FQ=5.8;PV4=1,0.007,0,1 GT:PL:GQ 0/1:39,0,137:38 chr1 158054379 . A G 116 . DP=42;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,19,4,18;MQ=60;FQ=119;PV4=0.11,9e-17,1,0.33 GT:PL:GQ 0/1:146,0,174:99 chr1 158056549 . G C 18.1 . DP=31;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,13,0,14;MQ=60;FQ=21;PV4=1,1.5e-18,1,1 GT:PL:GQ 0/1:48,0,205:51 chr1 158058109 . C A 137 . DP=51;VDB=0.0216;AF1=0.5;AC1=1;DP4=17,4,24,5;MQ=58;FQ=140;PV4=1,1.7e-13,1,1 GT:PL:GQ 0/1:167,0,241:99 chr1 158066834 . A G 225 . DP=35;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,8,8,7;MQ=60;FQ=225;PV4=0.74,1,1,0.13 GT:PL:GQ 0/1:255,0,255:99 chr1 158146946 . T C 137 . DP=34;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,29,5;MQ=57;FQ=-129 GT:PL:GQ 1/1:170,102,0:99 chr1 158151218 . A G 17.1 . DP=9;VDB=0.0156;AF1=0.5;AC1=1;DP4=6,0,2,0;MQ=60;FQ=20.1;PV4=1,0.47,1,1 GT:PL:GQ 0/1:47,0,132:50 chr1 158153996 . T C 133 . DP=39;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,3,31;MQ=60;FQ=-129 GT:PL:GQ 1/1:166,102,0:99 chr1 158224825 . C T 16.1 . DP=8;VDB=0.0301;AF1=0.5;AC1=1;DP4=4,0,3,1;MQ=57;FQ=19.1;PV4=1,9.3e-07,1,1 GT:PL:GQ 0/1:46,0,96:49 chr1 158224904 . C T 98 . DP=36;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,3,16,2;MQ=59;FQ=101;PV4=0.66,1.3e-12,0.17,1 GT:PL:GQ 0/1:128,0,246:99 chr1 158225019 . C G 70 . DP=64;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,21,12,15;MQ=60;FQ=73;PV4=0.79,1.1e-17,1,1 GT:PL:GQ 0/1:100,0,255:99 chr1 158225243 . A T 23.5 . DP=4;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,4;MQ=54;FQ=-39 GT:PL:GQ 1/1:56,12,0:21 chr1 158263123 . C T 117 . DP=154;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,56,26,43;MQ=59;FQ=120;PV4=0.39,3.3e-69,0.44,1 GT:PL:GQ 0/1:147,0,255:99 chr1 158297960 . C T 29 . DP=40;VDB=0.0399;AF1=0.5;AC1=1;DP4=20,6,11,2;MQ=60;FQ=32;PV4=0.69,4e-19,1,0.34 GT:PL:GQ 0/1:59,0,255:62 chr1 158300306 . G C 225 . DP=46;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,6,22,4;MQ=60;FQ=225;PV4=0.29,0.35,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 158324425 . A G 163 . DP=87;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,27,16,22;MQ=60;FQ=166;PV4=1,2e-30,1,1 GT:PL:GQ 0/1:193,0,255:99 chr1 158368392 . C T 225 . DP=33;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,6,11,5;MQ=59;FQ=225;PV4=1,1,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr1 158435250 . C T 110 . DP=23;VDB=0.0140;AF1=0.5;AC1=1;DP4=10,1,9,3;MQ=58;FQ=113;PV4=0.59,4.1e-09,1,1 GT:PL:GQ 0/1:140,0,188:99 chr1 158435278 . G A 225 . DP=38;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,4,15,4;MQ=59;FQ=225;PV4=1,0.28,1,0.48 GT:PL:GQ 0/1:255,0,255:99 chr1 158436299 . T C 79 . DP=60;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,30,2,24;MQ=60;FQ=82;PV4=0.69,2.1e-29,1,1 GT:PL:GQ 0/1:109,0,255:99 chr1 158450314 . A G 115 . DP=171;VDB=0.0380;AF1=0.5;AC1=1;DP4=33,51,26,59;MQ=60;FQ=118;PV4=0.26,1.8e-73,1,1 GT:PL:GQ 0/1:145,0,255:99 chr1 158450382 . C T 122 . DP=117;VDB=0.0399;AF1=0.5;AC1=1;DP4=23,43,15,32;MQ=59;FQ=125;PV4=0.84,2.5e-46,1,0.42 GT:PL:GQ 0/1:152,0,255:99 chr1 158507157 . A T 91 . DP=56;VDB=0.0244;AF1=0.5;AC1=1;DP4=26,5,19,6;MQ=60;FQ=94;PV4=0.51,2.7e-17,1,1 GT:PL:GQ 0/1:121,0,255:99 chr1 158507160 . T G 10.4 . DP=57;VDB=0.0298;AF1=0.5;AC1=1;DP4=24,7,9,5;MQ=59;FQ=13.2;PV4=0.47,2.3e-14,1,1 GT:PL:GQ 0/1:40,0,255:42 chr1 158507184 . A G 141 . DP=93;VDB=0.0399;AF1=0.5;AC1=1;DP4=36,14,32,9;MQ=59;FQ=144;PV4=0.63,5.3e-25,0.44,0.26 GT:PL:GQ 0/1:171,0,255:99 chr1 158507398 . G T 52 . DP=16;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,6,0,9;MQ=60;FQ=55;PV4=1,2.3e-10,1,0.22 GT:PL:GQ 0/1:82,0,126:85 chr1 158517142 . C T 225 . DP=67;VDB=0.0399;AF1=0.5;AC1=1;DP4=20,17,13,14;MQ=60;FQ=225;PV4=0.8,0.3,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 158517353 . G A 155 . DP=104;VDB=0.0380;AF1=0.5;AC1=1;DP4=36,22,27,18;MQ=60;FQ=158;PV4=0.84,3.3e-34,1,1 GT:PL:GQ 0/1:185,0,255:99 chr1 158532405 . T G 13.2 . DP=6;VDB=0.0000;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=16.1;PV4=1,0.0024,1,1 GT:PL:GQ 0/1:43,0,71:46 chr1 158533140 . A G 97 . DP=75;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,17,18,18;MQ=59;FQ=100;PV4=0.65,2.6e-35,1,1 GT:PL:GQ 0/1:127,0,255:99 chr1 158533224 . A G 115 . DP=75;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,26,16,22;MQ=60;FQ=118;PV4=0.22,2.2e-20,1,1 GT:PL:GQ 0/1:145,0,255:99 chr1 158548672 . T C 128 . DP=45;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,6,16,4;MQ=60;FQ=131;PV4=0.73,1.3e-11,1,1 GT:PL:GQ 0/1:158,0,255:99 chr1 158549264 . G A 95 . DP=78;VDB=0.0400;AF1=0.5;AC1=1;DP4=27,19,17,13;MQ=60;FQ=98;PV4=1,8.5e-38,1,0.075 GT:PL:GQ 0/1:125,0,255:99 chr1 158549420 . C T 225 . DP=76;VDB=0.0380;AF1=0.5;AC1=1;DP4=23,14,18,19;MQ=60;FQ=225;PV4=0.35,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 158549492 . C T 115 . DP=107;VDB=0.0345;AF1=0.5;AC1=1;DP4=34,26,30,14;MQ=60;FQ=118;PV4=0.31,3.8e-29,1,1 GT:PL:GQ 0/1:145,0,255:99 chr1 158549511 . A G 145 . DP=124;VDB=0.0380;AF1=0.5;AC1=1;DP4=44,27,35,17;MQ=60;FQ=148;PV4=0.57,1.2e-34,1,1 GT:PL:GQ 0/1:175,0,255:99 chr1 158577109 . A C 173 . DP=75;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,24,13,21;MQ=59;FQ=176;PV4=1,6.3e-19,1,1 GT:PL:GQ 0/1:203,0,255:99 chr1 158580921 . gcacacacacacacacacacacacacacacacacac gcacacacacacacacacacacacacacacacac 68.5 . INDEL;DP=5;VDB=0.0014;AF1=0.505;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-17.6;PV4=1,1,1,0.49 GT:PL:GQ 0/1:106,0,17:20 chr1 158582543 . G A 112 . DP=49;VDB=0.0099;AF1=0.5;AC1=1;DP4=21,7,12,9;MQ=60;FQ=115;PV4=0.23,7.6e-15,1,1 GT:PL:GQ 0/1:142,0,255:99 chr1 158582552 . G A 134 . DP=63;VDB=0.0244;AF1=0.5;AC1=1;DP4=27,10,17,9;MQ=59;FQ=137;PV4=0.58,5.3e-20,0.4,1 GT:PL:GQ 0/1:164,0,255:99 chr1 158582646 . T C 160 . DP=66;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,20,12,23;MQ=59;FQ=163;PV4=1,9.8e-26,1,1 GT:PL:GQ 0/1:190,0,255:99 chr1 158584091 . A G 91 . DP=15;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,4,4,4;MQ=60;FQ=94;PV4=1,1.5e-06,1,1 GT:PL:GQ 0/1:121,0,167:99 chr1 158587390 . C T 179 . DP=128;VDB=0.0392;AF1=0.5;AC1=1;DP4=36,15,43,31;MQ=59;FQ=182;PV4=0.19,1.1e-38,1,1 GT:PL:GQ 0/1:209,0,255:99 chr1 158587784 . T G 222 . DP=25;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,23,2;MQ=59;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 158597309 . A G 225 . DP=66;VDB=0.0118;AF1=0.5;AC1=1;DP4=33,2,24,6;MQ=60;FQ=223;PV4=0.13,0.49,1,0.31 GT:PL:GQ 0/1:255,0,251:99 chr1 158607788 . T G 117 . DP=21;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,17,2;MQ=60;FQ=-84 GT:PL:GQ 1/1:150,57,0:99 chr1 158607935 . T G 123 . DP=58;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,11,18,13;MQ=60;FQ=126;PV4=1,1.2e-22,1,0.36 GT:PL:GQ 0/1:153,0,255:99 chr1 158612236 . A G 225 . DP=60;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,11,13,14;MQ=60;FQ=225;PV4=0.29,0.15,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 158612548 . T A 123 . DP=51;VDB=0.0216;AF1=0.5;AC1=1;DP4=18,3,25,3;MQ=59;FQ=126;PV4=1,6.4e-16,1,1 GT:PL:GQ 0/1:153,0,245:99 chr1 158618223 . C T 49 . DP=10;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,1,3,2;MQ=58;FQ=52;PV4=1,0.075,1,0.38 GT:PL:GQ 0/1:79,0,116:82 chr1 158618455 . G A 42 . DP=14;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,7,2,5;MQ=60;FQ=45;PV4=0.46,9.4e-08,1,1 GT:PL:GQ 0/1:72,0,135:75 chr1 158619728 . A C 222 . DP=66;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,34,29;MQ=60;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr1 158619822 . A C 66 . DP=56;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,25,9,17;MQ=60;FQ=69;PV4=0.14,4.1e-32,1,1 GT:PL:GQ 0/1:96,0,255:99 chr1 158626378 . C T 225 . DP=52;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,7,16,14;MQ=60;FQ=225;PV4=0.4,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 158631171 . A C 126 . DP=106;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,45,8,35;MQ=60;FQ=129;PV4=0.36,1.3e-28,0.4,0.47 GT:PL:GQ 0/1:156,0,255:99 chr1 158639601 . A G 148 . DP=40;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,11,7,18;MQ=59;FQ=151;PV4=0.72,2.3e-13,0.23,1 GT:PL:GQ 0/1:178,0,209:99 chr1 158644105 . T A 73 . DP=53;VDB=0.0322;AF1=0.5;AC1=1;DP4=27,1,24,1;MQ=60;FQ=76;PV4=1,4.6e-27,1,0.44 GT:PL:GQ 0/1:103,0,220:99 chr1 158644294 . G T 159 . DP=68;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,21,9,23;MQ=60;FQ=162;PV4=0.79,3.7e-17,1,0.078 GT:PL:GQ 0/1:189,0,255:99 chr1 158647495 . A T 222 . DP=111;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,46,62;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 158647522 . A G 177 . DP=99;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,27,18,36;MQ=60;FQ=180;PV4=0.83,4.9e-23,0.19,0.38 GT:PL:GQ 0/1:207,0,255:99 chr1 158647631 . T A 222 . DP=21;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,3,17;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr1 158647669 . T C 25 . DP=8;VDB=0.0017;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=28;PV4=1,4.6e-05,1,0.038 GT:PL:GQ 0/1:55,0,100:58 chr1 158654852 . A G 101 . DP=49;VDB=0.0099;AF1=0.5;AC1=1;DP4=24,2,18,3;MQ=60;FQ=104;PV4=0.64,6.5e-17,1,1 GT:PL:GQ 0/1:131,0,241:99 chr1 158655036 . G A 222 . DP=109;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,58,47;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 158655162 . C A 222 . DP=74;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,14,55;MQ=59;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr1 158656281 . T C 48.3 . DP=5;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,5,0;MQ=55;FQ=-42 GT:PL:GQ 1/1:81,15,0:27 chr1 158656347 . CAGAGAGAGAGAGAGAGAGA CAGAGAGAGAGAGAGAGAGAGAGA 189 . INDEL;DP=12;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,3,7;MQ=60;FQ=-61.5 GT:PL:GQ 1/1:255,52,25:51 chr1 158687896 . C T 161 . DP=68;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,13,20,11;MQ=60;FQ=164;PV4=1,7e-19,0.14,1 GT:PL:GQ 0/1:191,0,255:99 chr1 158735595 . C T 222 . DP=48;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,22,25;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 158735691 . T C 222 . DP=45;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,27,18;MQ=60;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 158735740 . A G 170 . DP=44;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,22,22;MQ=59;FQ=-159 GT:PL:GQ 1/1:203,132,0:99 chr1 158735892 . A G 222 . DP=76;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,38,35;MQ=59;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr1 158736215 . G A 222 . DP=61;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,32;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 158747506 . C G 69 . DP=11;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,4,0,5;MQ=60;FQ=69.5;PV4=1,0.0008,1,1 GT:PL:GQ 0/1:99,0,100:99 chr1 158813819 . A G 179 . DP=63;VDB=0.0345;AF1=1;AC1=2;DP4=0,1,45,13;MQ=60;FQ=-175;PV4=0.24,0.018,1,0.25 GT:PL:GQ 1/1:212,148,0:99 chr1 158906555 . A C 25 . DP=5;VDB=0.0049;AF1=0.5008;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-4.12;PV4=1,0.00028,1,0.22 GT:PL:GQ 0/1:55,0,25:28 chr1 158909164 . C A 141 . DP=30;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,26,2;MQ=60;FQ=-111 GT:PL:GQ 1/1:174,84,0:99 chr1 158913525 . A G 158 . DP=22;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,19,0;MQ=59;FQ=-58;PV4=1,1,1,0.42 GT:PL:GQ 1/1:191,31,0:59 chr1 158913532 . C T 134 . DP=32;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,0,14,0;MQ=59;FQ=137;PV4=1,0.25,1,1 GT:PL:GQ 0/1:164,0,177:99 chr1 158943382 . C A 113 . DP=49;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,4;MQ=60;FQ=-84 GT:PL:GQ 1/1:146,57,0:99 chr1 158946629 . AATATATGTATATATAT AATATATGTATATATATGTATATATAT 14.4 . INDEL;DP=10;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,2;MQ=29;FQ=-40.5 GT:PL:GQ 1/1:53,6,0:10 chr1 158986477 . G C 222 . DP=96;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,46,47;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 158987941 . A G 149 . DP=19;VDB=0.0099;AF1=0.5;AC1=1;DP4=11,0,6,2;MQ=60;FQ=132;PV4=0.16,1,1,0.21 GT:PL:GQ 0/1:179,0,159:99 chr1 158990247 . A G 101 . DP=66;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,31,4,18;MQ=59;FQ=104;PV4=0.55,1.3e-16,0.32,1 GT:PL:GQ 0/1:131,0,255:99 chr1 159002301 . T C 192 . DP=34;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,6,9,4;MQ=59;FQ=195;PV4=1,0.25,1,1 GT:PL:GQ 0/1:222,0,255:99 chr1 159002377 . C A 225 . DP=70;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,18,14,10;MQ=59;FQ=225;PV4=1,1,0.028,1 GT:PL:GQ 0/1:255,0,255:99 chr1 159002389 . T A 88 . DP=69;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,20,13,9;MQ=59;FQ=91;PV4=1,2e-15,0.019,1 GT:PL:GQ 0/1:118,0,255:99 chr1 159021364 . G A 4.13 . DP=8;VDB=0.0007;AF1=0.4998;AC1=1;DP4=4,0,4,0;MQ=57;FQ=6.2;PV4=1,8.1e-05,0.18,0.35 GT:PL:GQ 0/1:32,0,96:31 chr1 159021445 . A G 225 . DP=65;VDB=0.0345;AF1=0.5;AC1=1;DP4=23,4,29,7;MQ=59;FQ=224;PV4=0.74,0.44,0.11,1 GT:PL:GQ 0/1:255,0,253:99 chr1 159024668 . A T 42 . DP=19;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,8,1,8;MQ=60;FQ=45;PV4=1,1.7e-11,1,1 GT:PL:GQ 0/1:72,0,207:75 chr1 159169463 . C T 149 . DP=41;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,10,10,9;MQ=59;FQ=152;PV4=1,5.6e-14,0.14,0.17 GT:PL:GQ 0/1:179,0,255:99 chr1 159169641 . T C 196 . DP=23;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,10;MQ=60;FQ=-93 GT:PL:GQ 1/1:229,66,0:99 chr1 159174824 . G C 222 . DP=295;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,153,128;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 159174920 . C T 83 . DP=147;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,75,6,55;MQ=60;FQ=86;PV4=0.76,1.1e-50,1,1 GT:PL:GQ 0/1:113,0,255:99 chr1 159175354 . G A 176 . DP=151;VDB=0.0380;AF1=0.5;AC1=1;DP4=47,20,59,18;MQ=60;FQ=179;PV4=0.45,1.2e-42,1,0.37 GT:PL:GQ 0/1:206,0,255:99 chr1 159175527 . G A 199 . DP=171;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,51,36,62;MQ=60;FQ=202;PV4=0.061,9.9e-32,0.21,1 GT:PL:GQ 0/1:229,0,255:99 chr1 159272060 . T C 225 . DP=58;VDB=0.0298;AF1=0.5;AC1=1;DP4=17,8,22,11;MQ=60;FQ=225;PV4=1,0.063,1,0.42 GT:PL:GQ 0/1:255,0,255:99 chr1 159320979 . G A 225 . DP=247;VDB=0.0392;AF1=0.5;AC1=1;DP4=62,60,64,52;MQ=60;FQ=225;PV4=0.52,4.2e-09,0.48,0.43 GT:PL:GQ 0/1:255,0,255:99 chr1 159402584 . GTT GTTT 214 . INDEL;DP=53;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,4,46;MQ=60;FQ=-186 GT:PL:GQ 1/1:255,151,0:99 chr1 159409196 . T C 222 . DP=65;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,51,12;MQ=59;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr1 159409479 . T G 75 . DP=12;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,1,7,1;MQ=58;FQ=39;PV4=0.49,0.00038,0.28,1 GT:PL:GQ 0/1:105,0,66:69 chr1 159409533 . G A 146 . DP=60;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,47,7;MQ=60;FQ=-190 GT:PL:GQ 1/1:179,163,0:99 chr1 159409734 . G T 222 . DP=218;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,112,96;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 159409857 . A G 225 . DP=138;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,50,18,52;MQ=59;FQ=225;PV4=0.84,0.12,0.46,1 GT:PL:GQ 0/1:255,0,255:99 chr1 159409884 . G A 225 . DP=109;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,42,14,32;MQ=59;FQ=225;PV4=0.67,1,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr1 159505297 . C T 222 . DP=144;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,69,70;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 159558258 . A G 222 . DP=45;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,18,26;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 159684047 . ccacacacacacacacacacacacacacacacacacacac ccacacacacacacacacacacacacacac,ccacacacacacacacacacacacacacacacacacac,ccacacacacacacacacacacacacacacac 27.4 . INDEL;DP=11;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,6;MQ=40;FQ=-43.5 GT:PL:GQ 1/1:124,66,57,69,0,63,90,21,26,84:16 chr1 159778699 . G A 66 . DP=25;VDB=0.0216;AF1=0.5;AC1=1;DP4=13,0,11,1;MQ=60;FQ=69;PV4=0.48,5e-08,1,1 GT:PL:GQ 0/1:96,0,164:99 chr1 159785284 . C G 225 . DP=79;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,14,25,17;MQ=59;FQ=225;PV4=0.81,0.00018,0.11,0.037 GT:PL:GQ 0/1:255,0,255:99 chr1 159799599 . CAAA CAAAA 214 . INDEL;DP=46;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,41,5;MQ=60;FQ=-173 GT:PL:GQ 1/1:255,138,0:99 chr1 159799910 . G A 89 . DP=62;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,27,7,11;MQ=60;FQ=92;PV4=1,3.4e-15,1,1 GT:PL:GQ 0/1:119,0,255:99 chr1 159824967 . G C 222 . DP=24;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,19,5;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 159825061 . G C 222 . DP=32;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,20;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 159828128 . A G 115 . DP=21;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,3,15;MQ=60;FQ=-81 GT:PL:GQ 1/1:148,54,0:99 chr1 159828746 . G A 16.1 . DP=12;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,5,0,7;MQ=60;FQ=19.1;PV4=1,7.5e-06,1,1 GT:PL:GQ 0/1:46,0,97:49 chr1 159832425 . G A 42 . DP=17;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,6,0,10;MQ=60;FQ=45;PV4=0.41,2.9e-08,1,0.27 GT:PL:GQ 0/1:72,0,152:75 chr1 159842691 . C G 98 . DP=44;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,6,19,6;MQ=60;FQ=101;PV4=0.5,1.1e-14,1,1 GT:PL:GQ 0/1:128,0,255:99 chr1 159850401 . C G 152 . DP=47;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,7,13,10;MQ=60;FQ=155;PV4=0.54,5.5e-16,1,1 GT:PL:GQ 0/1:182,0,255:99 chr1 159854392 . C A 18.1 . DP=6;VDB=0.0177;AF1=0.5;AC1=1;DP4=1,2,1,2;MQ=60;FQ=21;PV4=1,0.029,1,1 GT:PL:GQ 0/1:48,0,79:51 chr1 159860259 . G A 81 . DP=20;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,0,11,1;MQ=60;FQ=83.7;PV4=1,6.5e-10,1,0.064 GT:PL:GQ 0/1:111,0,123:99 chr1 159888701 . C T 166 . DP=96;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,27,18,33;MQ=59;FQ=169;PV4=1,2.3e-40,1,0.46 GT:PL:GQ 0/1:196,0,255:99 chr1 159889895 . T G 94 . DP=12;VDB=0.0140;AF1=0.5;AC1=1;DP4=5,1,6,0;MQ=60;FQ=97;PV4=1,1,1,0.27 GT:PL:GQ 0/1:124,0,143:99 chr1 159890163 . T A 110 . DP=16;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,8,2,5;MQ=60;FQ=113;PV4=0.55,0.09,1,1 GT:PL:GQ 0/1:140,0,175:99 chr1 159893461 . G A 34 . DP=11;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,5,1,5;MQ=60;FQ=37;PV4=1,4.6e-07,1,0.18 GT:PL:GQ 0/1:64,0,118:67 chr1 159897126 . C T 61.3 . DP=6;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:94,15,0:27 chr1 159897388 . C T 205 . DP=35;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,8,26;MQ=59;FQ=-129 GT:PL:GQ 1/1:238,102,0:99 chr1 159897681 . TAAAAAAAAAAAAAAA TAAAAAAAAAAAAA,TAAAAAAAAAAAA,TAAAAAAAAAAA 61.5 . INDEL;DP=47;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,10,22;MQ=58;FQ=-111 GT:PL:GQ 1/1:117,91,15,85,0,67,108,67,68,105:99 chr1 159898100 . A G 222 . DP=30;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,9,19;MQ=60;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 159898913 . A G 44.3 . DP=6;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,3,2;MQ=60;FQ=-42 GT:PL:GQ 1/1:77,15,0:27 chr1 159902526 . T C 222 . DP=23;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,3,20;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr1 159906156 . A G 222 . DP=50;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,19,29;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr1 159906849 . A G 57 . DP=3;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:89,9,0:16 chr1 159907362 . A G 53.1 . DP=6;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:86,18,0:33 chr1 159907367 . T C 66 . DP=8;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:99,24,0:45 chr1 159922369 . C T 82 . DP=15;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,6,2,6;MQ=60;FQ=83.8;PV4=0.47,2.2e-05,1,1 GT:PL:GQ 0/1:112,0,117:99 chr1 159923111 . T G 220 . DP=31;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,6,12,4;MQ=60;FQ=222;PV4=0.46,0.48,1,1 GT:PL:GQ 0/1:250,0,255:99 chr1 160012406 . A G 72 . DP=21;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,8,0,12;MQ=60;FQ=75;PV4=0.43,1.9e-08,1,1 GT:PL:GQ 0/1:102,0,169:99 chr1 160061959 . C T 48 . DP=7;VDB=0.0049;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=44;PV4=1,1,1,1 GT:PL:GQ 0/1:78,0,72:74 chr1 160085868 . A C 73.1 . DP=8;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:106,21,0:39 chr1 160090674 . T C 157 . DP=23;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,19,3;MQ=59;FQ=-93 GT:PL:GQ 1/1:190,66,0:99 chr1 160090681 . CCCTTCCT CCCT 217 . INDEL;DP=26;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,2,8,2;MQ=59;FQ=217;PV4=1,0.0002,0.11,1 GT:PL:GQ 0/1:255,0,255:99 chr1 160093222 . C T 210 . DP=36;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,14,21;MQ=60;FQ=-132 GT:PL:GQ 1/1:243,105,0:99 chr1 160093648 . G A 86 . DP=17;VDB=0.0359;AF1=0.5;AC1=1;DP4=3,5,3,6;MQ=60;FQ=89;PV4=1,1.8e-08,1,1 GT:PL:GQ 0/1:116,0,185:99 chr1 160093911 . T C 114 . DP=20;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,15;MQ=60;FQ=-81 GT:PL:GQ 1/1:147,54,0:99 chr1 160093927 . T A 129 . DP=15;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,6,1,7;MQ=60;FQ=96;PV4=1,0.047,1,1 GT:PL:GQ 0/1:159,0,123:99 chr1 160095127 . T A 58 . DP=8;VDB=0.0333;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=60.8;PV4=1,0.15,1,1 GT:PL:GQ 0/1:88,0,101:91 chr1 160097666 . G A 172 . DP=31;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,7,21;MQ=59;FQ=-111 GT:PL:GQ 1/1:205,84,0:99 chr1 160098543 . G A 172 . DP=77;VDB=0.0271;AF1=0.5;AC1=1;DP4=21,17,27,11;MQ=53;FQ=175;PV4=0.23,1.6e-23,6.3e-08,1 GT:PL:GQ 0/1:202,0,255:99 chr1 160124875 . G A 130 . DP=14;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,12,2;MQ=58;FQ=-69 GT:PL:GQ 1/1:163,42,0:81 chr1 160125802 . C T 136 . DP=42;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,4,13,8;MQ=60;FQ=139;PV4=0.31,1.1e-11,1,0.099 GT:PL:GQ 0/1:166,0,255:99 chr1 160126020 . G A 127 . DP=11;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,4,2,5;MQ=60;FQ=56;PV4=0.49,0.45,1,0.076 GT:PL:GQ 0/1:157,0,83:86 chr1 160128994 . C T 31 . DP=7;VDB=0.0007;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=34;PV4=1,0.001,1,0.11 GT:PL:GQ 0/1:61,0,81:64 chr1 160134056 . G A 149 . DP=169;VDB=0.0380;AF1=0.5;AC1=1;DP4=34,49,43,39;MQ=60;FQ=152;PV4=0.16,2.4e-52,0.28,1 GT:PL:GQ 0/1:179,0,255:99 chr1 160134205 . C T 18.1 . DP=30;VDB=0.0053;AF1=0.5;AC1=1;DP4=2,19,0,9;MQ=58;FQ=21;PV4=1,3e-07,0.45,1 GT:PL:GQ 0/1:48,0,235:51 chr1 160136350 . G A 129 . DP=36;VDB=0.0014;AF1=0.5;AC1=1;DP4=20,2,13,1;MQ=56;FQ=132;PV4=1,0.048,0.00035,1 GT:PL:GQ 0/1:159,0,243:99 chr1 160137300 . A C 55 . DP=16;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,6,1,6;MQ=58;FQ=58;PV4=1,0.00046,0.15,1 GT:PL:GQ 0/1:85,0,173:88 chr1 160141196 . C T 217 . DP=94;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,54,38;MQ=60;FQ=-282 GT:PL:GQ 1/1:250,255,0:99 chr1 160141268 . T C 169 . DP=85;VDB=0.0384;AF1=0.5;AC1=1;DP4=15,27,20,22;MQ=60;FQ=172;PV4=0.38,2.1e-25,1,0.13 GT:PL:GQ 0/1:199,0,255:99 chr1 160141286 . C G 120 . DP=78;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,24,15,21;MQ=60;FQ=123;PV4=1,8.7e-31,0.14,1 GT:PL:GQ 0/1:150,0,255:99 chr1 160141636 . C T 98 . DP=8;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,2,6;MQ=57;FQ=-51 GT:PL:GQ 1/1:131,24,0:45 chr1 160146173 . T C 97 . DP=36;VDB=0.0164;AF1=0.5;AC1=1;DP4=13,5,14,3;MQ=60;FQ=100;PV4=0.69,2.1e-17,1,1 GT:PL:GQ 0/1:127,0,255:99 chr1 160147502 . T G 122 . DP=40;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,10,6,17;MQ=59;FQ=125;PV4=1,4.1e-12,0.22,0.19 GT:PL:GQ 0/1:152,0,214:99 chr1 160147510 . G A 66 . DP=36;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,10,5,15;MQ=60;FQ=69;PV4=0.71,1.1e-18,1,1 GT:PL:GQ 0/1:96,0,251:99 chr1 160151421 . G C 48 . DP=27;VDB=0.0164;AF1=0.5;AC1=1;DP4=12,4,9,2;MQ=58;FQ=51;PV4=1,2.6e-07,1,1 GT:PL:GQ 0/1:78,0,248:81 chr1 160151450 . T C 95 . DP=40;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,9,10,6;MQ=59;FQ=98;PV4=1,9.8e-13,1,1 GT:PL:GQ 0/1:125,0,255:99 chr1 160151624 . GCCC GCCCC 217 . INDEL;DP=84;VDB=0.0216;AF1=0.5;AC1=1;DP4=33,11,25,13;MQ=59;FQ=217;PV4=0.47,1,0.029,1 GT:PL:GQ 0/1:255,0,255:99 chr1 160156027 . C G 213 . DP=31;VDB=0.0384;AF1=0.5;AC1=1;DP4=12,2,11,5;MQ=57;FQ=191;PV4=0.4,0.0015,1,0.054 GT:PL:GQ 0/1:243,0,218:99 chr1 160163446 . C T 68.5 . DP=4;VDB=0.0027;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:101,12,0:21 chr1 160163509 . C T 44 . DP=19;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,1,10,0;MQ=60;FQ=47;PV4=0.44,4.9e-10,1,1 GT:PL:GQ 0/1:74,0,168:77 chr1 160164668 . T C 43.1 . DP=6;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,6,0;MQ=56;FQ=-45 GT:PL:GQ 1/1:76,18,0:33 chr1 160168368 . G A 36 . DP=37;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,5,11,2;MQ=59;FQ=39;PV4=1,3.9e-12,1,1 GT:PL:GQ 0/1:66,0,255:69 chr1 160169473 . T C 17.8 . DP=3;VDB=0.0050;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:49,6,0:10 chr1 160178356 . A G 173 . DP=28;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,19,8;MQ=60;FQ=-108 GT:PL:GQ 1/1:206,81,0:99 chr1 160247185 . G C 95 . DP=45;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,14,4,19;MQ=60;FQ=98;PV4=0.71,6e-19,1,1 GT:PL:GQ 0/1:125,0,255:99 chr1 160251792 . A G 62 . DP=44;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,3,15,4;MQ=60;FQ=65;PV4=0.44,1.2e-20,1,1 GT:PL:GQ 0/1:92,0,255:95 chr1 160260233 . T C 53 . DP=31;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,10,6,7;MQ=58;FQ=56;PV4=0.7,1.6e-08,0.37,1 GT:PL:GQ 0/1:83,0,252:86 chr1 160263124 . C T 181 . DP=84;VDB=0.0400;AF1=0.5;AC1=1;DP4=20,14,23,23;MQ=59;FQ=184;PV4=0.5,9.3e-26,0.068,0.34 GT:PL:GQ 0/1:211,0,255:99 chr1 160265515 . T C 91 . DP=19;VDB=0.0033;AF1=0.5;AC1=1;DP4=13,0,5,1;MQ=59;FQ=94;PV4=0.32,0.45,0.073,0.21 GT:PL:GQ 0/1:121,0,175:99 chr1 160275434 . A G 155 . DP=73;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,20,47;MQ=60;FQ=-229 GT:PL:GQ 1/1:188,202,0:99 chr1 160302444 . G A 15.1 . DP=7;VDB=0.0060;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=18.1;PV4=1,0.00081,1,1 GT:PL:GQ 0/1:45,0,103:48 chr1 160303416 . G A 179 . DP=118;VDB=0.0392;AF1=0.5;AC1=1;DP4=34,22,29,32;MQ=60;FQ=182;PV4=0.19,5e-25,1,0.27 GT:PL:GQ 0/1:209,0,255:99 chr1 160309664 . T G 114 . DP=75;VDB=0.0345;AF1=0.5;AC1=1;DP4=22,15,28,8;MQ=60;FQ=117;PV4=0.13,7.1e-33,0.16,0.31 GT:PL:GQ 0/1:144,0,255:99 chr1 160313733 . C A 62 . DP=14;VDB=0.0001;AF1=0.5;AC1=1;DP4=1,3,0,8;MQ=58;FQ=63.8;PV4=0.33,3.2e-05,0.25,1 GT:PL:GQ 0/1:92,0,97:94 chr1 160318940 . A G 104 . DP=43;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,15,6,17;MQ=59;FQ=107;PV4=1,1.7e-19,0.093,1 GT:PL:GQ 0/1:134,0,255:99 chr1 160393905 . A G 106 . DP=55;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,7,17,8;MQ=60;FQ=109;PV4=0.76,1.7e-17,0.15,0.47 GT:PL:GQ 0/1:136,0,255:99 chr1 160394173 . A G 191 . DP=35;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,16,2,16;MQ=60;FQ=107;PV4=0.49,1,1,0.2 GT:PL:GQ 0/1:221,0,134:99 chr1 160394937 . A C 126 . DP=32;VDB=0.0384;AF1=0.5;AC1=1;DP4=10,5,7,9;MQ=60;FQ=129;PV4=0.29,1.6e-08,1,0.049 GT:PL:GQ 0/1:156,0,240:99 chr1 160395003 . G A 157 . DP=31;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,10,7,9;MQ=60;FQ=160;PV4=0.43,2.1e-07,1,0.41 GT:PL:GQ 0/1:187,0,220:99 chr1 160458782 . A G 222 . DP=94;VDB=0.0399;AF1=1;AC1=2;DP4=0,1,57,26;MQ=59;FQ=-251;PV4=0.32,0.039,1,0.24 GT:PL:GQ 1/1:255,224,0:99 chr1 160580015 . A G 132 . DP=20;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,17,2;MQ=59;FQ=-84 GT:PL:GQ 1/1:165,57,0:99 chr1 160580549 . G T 128 . DP=76;VDB=0.0271;AF1=0.5;AC1=1;DP4=21,24,23,8;MQ=59;FQ=131;PV4=0.02,6.9e-31,1,0.45 GT:PL:GQ 0/1:158,0,255:99 chr1 160582248 . C G 162 . DP=27;VDB=0.0244;AF1=0.5;AC1=1;DP4=8,6,8,3;MQ=60;FQ=165;PV4=0.68,0.12,1,0.4 GT:PL:GQ 0/1:192,0,255:99 chr1 160585554 . C G 222 . DP=85;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,54,28;MQ=60;FQ=-274 GT:PL:GQ 1/1:255,247,0:99 chr1 160585706 . C T 125 . DP=22;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,4,18;MQ=60;FQ=-93 GT:PL:GQ 1/1:158,66,0:99 chr1 160604473 . G A 153 . DP=57;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,12,15,11;MQ=59;FQ=156;PV4=1,8.3e-10,0.48,1 GT:PL:GQ 0/1:183,0,255:99 chr1 160650913 . A G 103 . DP=10;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:136,30,0:57 chr1 160650938 . C T 55 . DP=15;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,0,5,2;MQ=60;FQ=58;PV4=0.2,0.0018,1,1 GT:PL:GQ 0/1:85,0,123:88 chr1 160654758 . C G 225 . DP=100;VDB=0.0400;AF1=0.5;AC1=1;DP4=30,28,22,17;MQ=60;FQ=225;PV4=0.68,0.26,0.39,1 GT:PL:GQ 0/1:255,0,255:99 chr1 160654786 . G A 225 . DP=102;VDB=0.0392;AF1=0.5;AC1=1;DP4=29,29,22,20;MQ=60;FQ=225;PV4=0.84,0.09,1,0.24 GT:PL:GQ 0/1:255,0,255:99 chr1 160722064 . A G 222 . DP=18;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,13;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr1 160786670 . A G 223 . DP=45;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,15,3,20;MQ=59;FQ=224;PV4=0.44,0.036,0.093,0.43 GT:PL:GQ 0/1:253,0,255:99 chr1 160789196 . A C 222 . DP=42;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,35;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 160793442 . A G 225 . DP=118;VDB=0.0399;AF1=0.5;AC1=1;DP4=31,31,31,22;MQ=60;FQ=225;PV4=0.45,0.021,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 160793560 . A G 225 . DP=81;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,33,8,28;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 160793962 . G C 222 . DP=35;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,1,21,3;MQ=59;FQ=120;PV4=1,1,0.25,1 GT:PL:GQ 0/1:252,0,147:99 chr1 160797514 . C G 225 . DP=95;VDB=0.0398;AF1=0.5;AC1=1;DP4=24,22,19,25;MQ=59;FQ=225;PV4=0.41,0.48,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 160797684 . A G 74 . DP=14;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,8,0,5;MQ=60;FQ=77;PV4=1,1,1,1 GT:PL:GQ 0/1:104,0,179:99 chr1 160801046 . C G 20 . DP=6;VDB=0.0196;AF1=0.5;AC1=1;DP4=4,0,2,0;MQ=60;FQ=23;PV4=1,0.058,1,0.068 GT:PL:GQ 0/1:50,0,108:53 chr1 160832212 . A G 33 . DP=3;VDB=0.0184;AF1=0.5004;AC1=1;DP4=1,0,2,0;MQ=60;FQ=3.55;PV4=1,1,1,1 GT:PL:GQ 0/1:63,0,28:31 chr1 160849060 . G A 69 . DP=15;VDB=0.0053;AF1=0.5;AC1=1;DP4=7,0,7,1;MQ=60;FQ=72;PV4=1,5.3e-06,1,1 GT:PL:GQ 0/1:99,0,128:99 chr1 160849082 . A G 79 . DP=25;VDB=0.0190;AF1=0.5;AC1=1;DP4=13,0,9,2;MQ=60;FQ=82;PV4=0.2,2.9e-11,1,1 GT:PL:GQ 0/1:109,0,165:99 chr1 160850280 . G A 17.1 . DP=16;VDB=0.0118;AF1=0.5;AC1=1;DP4=8,0,8,0;MQ=60;FQ=20.1;PV4=1,1e-11,1,0.29 GT:PL:GQ 0/1:47,0,144:50 chr1 160850936 . T C 75 . DP=136;VDB=0.0365;AF1=0.5;AC1=1;DP4=52,27,35,20;MQ=60;FQ=78;PV4=0.85,3.5e-50,0.4,1 GT:PL:GQ 0/1:105,0,255:99 chr1 160851619 . A G 36 . DP=5;VDB=0.0098;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=54;FQ=25.8;PV4=1,0.3,0.25,1 GT:PL:GQ 0/1:66,0,53:56 chr1 160851826 . A T 225 . DP=31;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,6,9,7;MQ=58;FQ=210;PV4=1,1,0.25,1 GT:PL:GQ 0/1:255,0,237:99 chr1 160851894 . G A 219 . DP=39;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,8,10,5;MQ=60;FQ=221;PV4=1,1,1,1 GT:PL:GQ 0/1:249,0,255:99 chr1 160852022 . C T 146 . DP=63;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,19,15,17;MQ=60;FQ=149;PV4=0.61,3.3e-15,1,0.36 GT:PL:GQ 0/1:176,0,255:99 chr1 160852046 . T C 118 . DP=57;VDB=0.0384;AF1=0.5;AC1=1;DP4=9,18,8,19;MQ=60;FQ=121;PV4=1,7.5e-22,0.16,1 GT:PL:GQ 0/1:148,0,255:99 chr1 160920813 . A G 204 . DP=39;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,24,12;MQ=59;FQ=-135 GT:PL:GQ 1/1:237,108,0:99 chr1 160969585 . C T 225 . DP=119;VDB=0.0322;AF1=0.5;AC1=1;DP4=39,30,24,21;MQ=59;FQ=225;PV4=0.85,0.002,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 160971146 . A G 132 . DP=36;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,5,12,6;MQ=60;FQ=135;PV4=1,3e-15,1,1 GT:PL:GQ 0/1:162,0,255:99 chr1 161013121 . C T 77 . DP=42;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,19,3,15;MQ=59;FQ=80;PV4=1,8.1e-15,0.43,0.34 GT:PL:GQ 0/1:107,0,255:99 chr1 161017556 . C T 168 . DP=57;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,8,20,11;MQ=60;FQ=171;PV4=1,5.7e-22,1,1 GT:PL:GQ 0/1:198,0,255:99 chr1 161019040 . G C 118 . DP=134;VDB=0.0400;AF1=0.5;AC1=1;DP4=44,36,28,23;MQ=60;FQ=121;PV4=1,1.1e-44,1,0.41 GT:PL:GQ 0/1:148,0,255:99 chr1 161022380 . G A 138 . DP=66;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,32,8,16;MQ=59;FQ=141;PV4=0.13,4.5e-16,0.37,1 GT:PL:GQ 0/1:168,0,255:99 chr1 161043735 . A C 48 . DP=5;VDB=0.0089;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=27;PV4=1,0.42,1,1 GT:PL:GQ 0/1:78,0,54:57 chr1 161049358 . G A 121 . DP=24;VDB=0.0244;AF1=0.5;AC1=1;DP4=9,7,7,1;MQ=60;FQ=124;PV4=0.19,1,1,1 GT:PL:GQ 0/1:151,0,255:99 chr1 161049383 . G T 85 . DP=25;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,8,6,1;MQ=60;FQ=88;PV4=0.19,0.48,1,1 GT:PL:GQ 0/1:115,0,255:99 chr1 161132777 . G A 126 . DP=42;VDB=0.0384;AF1=0.5;AC1=1;DP4=18,7,11,6;MQ=59;FQ=129;PV4=0.74,2.4e-07,1,0.18 GT:PL:GQ 0/1:156,0,255:99 chr1 161163037 . T C 71 . DP=30;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,4,12,2;MQ=60;FQ=74;PV4=0.65,3.1e-12,1,0.45 GT:PL:GQ 0/1:101,0,221:99 chr1 161163633 . C T 225 . DP=54;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,7,12,18;MQ=60;FQ=225;PV4=0.052,1,0.19,1 GT:PL:GQ 0/1:255,0,255:99 chr1 161167698 . T G 25 . DP=4;VDB=0.0040;AF1=0.5008;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-4.12;PV4=1,0.0076,1,0.036 GT:PL:GQ 0/1:55,0,25:28 chr1 161168004 . C T 178 . DP=53;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,12,14,16;MQ=60;FQ=181;PV4=1,7.5e-17,1,0.2 GT:PL:GQ 0/1:208,0,255:99 chr1 161176137 . A G 145 . DP=15;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,1,7,1;MQ=60;FQ=127;PV4=1,1,1,1 GT:PL:GQ 0/1:175,0,154:99 chr1 161185058 . G T 99 . DP=31;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,0,16,1;MQ=59;FQ=102;PV4=1,6.6e-10,0.21,0.3 GT:PL:GQ 0/1:129,0,158:99 chr1 161187665 . C T 22 . DP=4;VDB=0.0196;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=23.6;PV4=1,0.3,1,0.29 GT:PL:GQ 0/1:52,0,56:54 chr1 161191296 . T C 21 . DP=9;VDB=0.0095;AF1=0.5;AC1=1;DP4=5,0,4,0;MQ=60;FQ=24;PV4=1,2.2e-05,1,1 GT:PL:GQ 0/1:51,0,112:54 chr1 161192845 . Ccacacacacacacacacacacacacacacacacacacac Ccacacacacacacacacacacacacac 141 . INDEL;DP=24;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,2,3,4;MQ=52;FQ=19.5;PV4=0.5,1,0.16,1 GT:PL:GQ 0/1:179,0,54:57 chr1 161202556 . T C 152 . DP=41;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,5,16,7;MQ=59;FQ=155;PV4=1,2.5e-14,1,0.37 GT:PL:GQ 0/1:182,0,255:99 chr1 161205608 . G C 61 . DP=18;VDB=0.0014;AF1=0.5;AC1=1;DP4=4,2,11,0;MQ=60;FQ=64;PV4=0.11,0.0054,1,0.33 GT:PL:GQ 0/1:91,0,110:94 chr1 161254302 . C T 72 . DP=17;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,5,2,10;MQ=60;FQ=66.4;PV4=1,6.2e-10,1,1 GT:PL:GQ 0/1:102,0,94:96 chr1 161276376 . G A 225 . DP=26;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,7,5,14;MQ=60;FQ=77;PV4=0.28,0.032,1,1 GT:PL:GQ 0/1:255,0,104:99 chr1 161276434 . A G 164 . DP=9;VDB=0.0241;AF1=1;AC1=2;DP4=0,0,4,3;MQ=60;FQ=-48 GT:PL:GQ 1/1:197,21,0:39 chr1 161479745 . A G 225 . DP=82;VDB=0.0298;AF1=0.5;AC1=1;DP4=23,21,21,15;MQ=59;FQ=225;PV4=0.65,0.11,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 161495477 . A T 225 . DP=68;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,13,20,11;MQ=45;FQ=225;PV4=1,1,0.058,1 GT:PL:GQ 0/1:255,0,255:99 chr1 161495885 . T C 65 . DP=83;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,19,27,13;MQ=57;FQ=68;PV4=0.1,1.6e-40,1,0.3 GT:PL:GQ 0/1:95,0,255:98 chr1 161514759 . C A 94 . DP=48;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,24,4,18;MQ=57;FQ=97;PV4=0.39,1.7e-23,0.08,0.33 GT:PL:GQ 0/1:124,0,241:99 chr1 161559256 . C T 10.4 . DP=9;VDB=0.0199;AF1=0.5;AC1=1;DP4=5,0,4,0;MQ=60;FQ=13.2;PV4=1,5.7e-05,1,1 GT:PL:GQ 0/1:40,0,119:42 chr1 161559327 . A G 222 . DP=50;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,35,12;MQ=58;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 161559571 . C T 83 . DP=20;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,7,4,6;MQ=29;FQ=85.8;PV4=0.31,8.5e-08,0.062,1 GT:PL:GQ 0/1:113,0,127:99 chr1 161561236 . C T 113 . DP=30;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,14,1,12;MQ=38;FQ=116;PV4=0.61,0.37,0.34,0.25 GT:PL:GQ 0/1:143,0,227:99 chr1 161561287 . A G 72.5 . DP=4;VDB=0.0324;AF1=1;AC1=2;DP4=0,0,0,4;MQ=34;FQ=-39 GT:PL:GQ 1/1:105,12,0:21 chr1 161565324 . C T 124 . DP=84;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,46,18;MQ=34;FQ=-220 GT:PL:GQ 1/1:157,193,0:99 chr1 161565479 . G A 69 . DP=79;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,35,5,23;MQ=56;FQ=72;PV4=0.57,5e-32,0.0057,1 GT:PL:GQ 0/1:99,0,255:99 chr1 161569419 . C G 3.54 . DP=46;VDB=0.0099;AF1=0.4998;AC1=1;DP4=26,5,14,0;MQ=40;FQ=5.47;PV4=0.3,2.5e-23,5.3e-08,1 GT:PL:GQ 0/1:31,0,255:30 chr1 161576227 . C G 19.1 . DP=10;VDB=0.0164;AF1=0.5;AC1=1;DP4=4,0,6,0;MQ=22;FQ=19.1;PV4=1,7.7e-06,0.092,1 GT:PL:GQ 0/1:49,0,49:49 chr1 161577204 . G T 68 . DP=53;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,22,3,23;MQ=30;FQ=71;PV4=1,6.1e-25,1,0.32 GT:PL:GQ 0/1:98,0,188:99 chr1 161577669 . G A 177 . DP=70;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,18,19,20;MQ=57;FQ=180;PV4=0.63,2.7e-24,1,1 GT:PL:GQ 0/1:207,0,255:99 chr1 161594226 . C T 88 . DP=10;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,7,3;MQ=50;FQ=-57 GT:PL:GQ 1/1:121,30,0:57 chr1 161594246 . G T 136 . DP=22;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,17,5;MQ=49;FQ=-93 GT:PL:GQ 1/1:169,66,0:99 chr1 161596283 . G A 27.5 . DP=5;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,4;MQ=40;FQ=-39 GT:PL:GQ 1/1:60,12,0:21 chr1 161599693 . T C 156 . DP=48;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,9,20,9;MQ=28;FQ=69;PV4=0.052,3.3e-10,1,0.00075 GT:PL:GQ 0/1:186,0,96:99 chr1 161600995 . C T 133 . DP=51;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,14,13,11;MQ=59;FQ=136;PV4=0.78,3.7e-18,0.33,0.48 GT:PL:GQ 0/1:163,0,255:99 chr1 161601118 . G C 44 . DP=8;VDB=0.0163;AF1=0.5;AC1=1;DP4=0,5,0,3;MQ=60;FQ=47;PV4=1,0.17,1,0.33 GT:PL:GQ 0/1:74,0,120:77 chr1 161601133 . T C 24.3 . DP=5;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:57,15,0:27 chr1 161641384 . G A 62 . DP=18;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,12,2,4;MQ=27;FQ=65;PV4=0.098,0.22,1,1 GT:PL:GQ 0/1:92,0,113:95 chr1 161643327 . C G 38 . DP=16;VDB=0.0384;AF1=0.5;AC1=1;DP4=2,8,3,3;MQ=37;FQ=41;PV4=0.3,5.5e-05,0.1,0.38 GT:PL:GQ 0/1:68,0,167:71 chr1 161645211 . G C 29 . DP=5;VDB=0.0110;AF1=0.5032;AC1=1;DP4=0,1,2,1;MQ=55;FQ=-8.63;PV4=1,0.14,0.33,1 GT:PL:GQ 0/1:59,0,19:22 chr1 161676970 . A G 48 . DP=17;VDB=0.0190;AF1=0.5;AC1=1;DP4=8,1,6,1;MQ=60;FQ=51;PV4=1,1.4e-08,1,1 GT:PL:GQ 0/1:78,0,179:81 chr1 161680258 . G A 225 . DP=67;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,18,19,11;MQ=59;FQ=225;PV4=0.33,0.32,1,0.19 GT:PL:GQ 0/1:255,0,255:99 chr1 161681918 . G C 176 . DP=19;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,4,5,5;MQ=60;FQ=163;PV4=1,0.039,1,0.12 GT:PL:GQ 0/1:206,0,190:99 chr1 161683136 . G A 129 . DP=52;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,11,12,8;MQ=59;FQ=132;PV4=0.77,4.8e-15,1,0.47 GT:PL:GQ 0/1:159,0,255:99 chr1 161695639 . G T 225 . DP=36;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,4,15,3;MQ=60;FQ=215;PV4=0.67,1,1,0.49 GT:PL:GQ 0/1:255,0,242:99 chr1 161696088 . T C 123 . DP=104;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,38,18,22;MQ=60;FQ=126;PV4=0.4,8.8e-24,1,1 GT:PL:GQ 0/1:153,0,255:99 chr1 161696998 . C G 17.1 . DP=4;VDB=0.0116;AF1=0.5008;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-4.13;PV4=1,0.013,1,1 GT:PL:GQ 0/1:47,0,25:28 chr1 161721707 . C T 140 . DP=17;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,3,5,3;MQ=60;FQ=143;PV4=1,0.22,1,1 GT:PL:GQ 0/1:170,0,200:99 chr1 161722779 . caaaaaaaaaa cAAAaaaaaaaaaa,cAAAAaaaaaaaaaa 10 . INDEL;DP=11;VDB=0.0003;AF1=0.5128;AC1=1;DP4=6,0,5,0;MQ=53;FQ=-21.6;PV4=1,1,0.22,0.27 GT:PL:GQ 0/1:58,11,24,41,0,49:17 chr1 161928327 . A G 152 . DP=86;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,35,14,19;MQ=59;FQ=155;PV4=0.35,1.1e-20,1,1 GT:PL:GQ 0/1:182,0,255:99 chr1 161954448 . C T 27 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:59,9,0:16 chr1 161967681 . A G 222 . DP=89;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,44,39;MQ=60;FQ=-277 GT:PL:GQ 1/1:255,250,0:99 chr1 161976234 . A G 222 . DP=88;VDB=0.0322;AF1=1;AC1=2;DP4=0,1,30,54;MQ=59;FQ=-252;PV4=1,1,0.42,0.26 GT:PL:GQ 1/1:255,225,0:99 chr1 161976272 . GAAAAAAAAAA GAAAAAAAAAAA 66.5 . INDEL;DP=62;VDB=0.0400;AF1=1;AC1=2;DP4=0,1,9,40;MQ=59;FQ=-169;PV4=1,1,0.4,0.45 GT:PL:GQ 1/1:107,134,0:99 chr1 162257033 . C G 59 . DP=16;VDB=0.0216;AF1=0.5;AC1=1;DP4=7,3,4,2;MQ=60;FQ=62;PV4=1,0.0064,1,0.24 GT:PL:GQ 0/1:89,0,207:92 chr1 162302635 . T C 27 . DP=17;VDB=0.0033;AF1=0.5;AC1=1;DP4=11,0,6,0;MQ=60;FQ=30;PV4=1,2.8e-07,1,0.28 GT:PL:GQ 0/1:57,0,167:60 chr1 162302689 . C T 62 . DP=82;VDB=0.0244;AF1=0.5;AC1=1;DP4=40,5,29,6;MQ=59;FQ=65;PV4=0.52,2e-40,1,0.39 GT:PL:GQ 0/1:92,0,255:95 chr1 162313597 . T C 185 . DP=74;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,45,26;MQ=60;FQ=-241 GT:PL:GQ 1/1:218,214,0:99 chr1 162313735 . C T 215 . DP=52;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,22,7,11;MQ=60;FQ=218;PV4=0.54,0.1,0.096,0.22 GT:PL:GQ 0/1:245,0,255:99 chr1 162343774 . A G 62 . DP=48;VDB=0.0365;AF1=0.5;AC1=1;DP4=23,8,15,1;MQ=60;FQ=65;PV4=0.14,1.8e-17,1,1 GT:PL:GQ 0/1:92,0,255:95 chr1 162344102 . C T 142 . DP=65;VDB=0.0322;AF1=0.5;AC1=1;DP4=23,15,17,8;MQ=60;FQ=145;PV4=0.6,7.7e-12,1,1 GT:PL:GQ 0/1:172,0,255:99 chr1 162344390 . A G 222 . DP=40;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,4,34;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 162345091 . G A 222 . DP=36;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,24,11;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr1 162345294 . G T 30 . DP=24;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,14,0,8;MQ=60;FQ=33;PV4=0.54,7.2e-08,1,0.19 GT:PL:GQ 0/1:60,0,231:63 chr1 162348662 . C T 27 . DP=3;VDB=0.0183;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:59,9,0:16 chr1 162351586 . G A 55 . DP=30;VDB=0.0271;AF1=0.5;AC1=1;DP4=14,2,10,3;MQ=59;FQ=58;PV4=0.63,5.1e-15,0.14,1 GT:PL:GQ 0/1:85,0,235:88 chr1 162352941 . G A 121 . DP=62;VDB=0.0380;AF1=0.5;AC1=1;DP4=23,5,29,3;MQ=60;FQ=124;PV4=0.45,5.7e-17,1,0.48 GT:PL:GQ 0/1:151,0,255:99 chr1 162367103 . G T 129 . DP=140;VDB=0.0380;AF1=0.5;AC1=1;DP4=40,32,34,33;MQ=59;FQ=132;PV4=0.61,3.1e-54,0.14,1 GT:PL:GQ 0/1:159,0,255:99 chr1 162367235 . G A 222 . DP=29;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,2,25;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 162381833 . C G 97 . DP=36;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,13,8,11;MQ=60;FQ=100;PV4=0.3,2.6e-16,1,0.4 GT:PL:GQ 0/1:127,0,252:99 chr1 162557578 . C T 18.8 . DP=3;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:50,6,0:10 chr1 162558705 . C T 65.1 . DP=23;VDB=0.0298;AF1=1;AC1=2;DP4=1,1,4,16;MQ=57;FQ=-46;PV4=0.41,0.0016,1,0.32 GT:PL:GQ 1/1:98,19,0:35 chr1 162722846 . C G 132 . DP=14;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,12,2;MQ=58;FQ=-69 GT:PL:GQ 1/1:165,42,0:81 chr1 162725655 . A C 11.1 . DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr1 162740327 . T C 222 . DP=146;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,53,88;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 162742180 . T C 44 . DP=10;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:77,30,0:57 chr1 162743418 . G T 201 . DP=40;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,8,31;MQ=60;FQ=-144 GT:PL:GQ 1/1:234,117,0:99 chr1 162748588 . C A 100 . DP=19;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81 GT:PL:GQ 1/1:133,54,0:99 chr1 162754049 . G A 77 . DP=15;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,14,0;MQ=53;FQ=-69 GT:PL:GQ 1/1:110,42,0:81 chr1 162754244 . T G 151 . DP=23;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,3,20;MQ=29;FQ=-96 GT:PL:GQ 1/1:184,69,0:99 chr1 162760551 . C T 130 . DP=17;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,2;MQ=32;FQ=-63 GT:PL:GQ 1/1:163,36,0:69 chr1 162760554 . T C 145 . DP=17;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,2;MQ=32;FQ=-69 GT:PL:GQ 1/1:178,42,0:81 chr1 162765475 . G C 222 . DP=55;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,31,21;MQ=34;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 162766476 . C T 172 . DP=89;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,64;MQ=60;FQ=-282 GT:PL:GQ 1/1:205,255,0:99 chr1 162822771 . A C 104 . DP=13;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:137,39,0:75 chr1 162824553 . G A 192 . DP=45;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,35,7;MQ=59;FQ=-153 GT:PL:GQ 1/1:225,126,0:99 chr1 162825457 . C A 222 . DP=83;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,42,39;MQ=60;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr1 163137907 . T A 156 . DP=21;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,16,4;MQ=59;FQ=-87 GT:PL:GQ 1/1:189,60,0:99 chr1 163142537 . G A 82.5 . DP=4;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:115,12,0:21 chr1 163142555 . G A 35.8 . DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:67,6,0:10 chr1 163187232 . T C 15.6 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:48,12,0:20 chr1 163187263 . G A 150 . DP=10;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:183,30,0:57 chr1 163309302 . C T 222 . DP=51;VDB=0.0244;AF1=1;AC1=2;DP4=1,0,5,45;MQ=59;FQ=-145;PV4=0.12,1,0.42,0.26 GT:PL:GQ 1/1:255,118,0:99 chr1 164559536 . A G 95.5 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:128,12,0:21 chr1 164789444 . A G 222 . DP=15;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,5,10;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr1 165173216 . A G 222 . DP=30;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,17;MQ=58;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 165180089 . T A 99 . DP=23;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,11,3,8;MQ=60;FQ=102;PV4=0.32,1e-09,1,1 GT:PL:GQ 0/1:129,0,194:99 chr1 165218679 . C T 225 . DP=58;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,6,21,10;MQ=60;FQ=225;PV4=0.56,0.088,1,0.41 GT:PL:GQ 0/1:255,0,255:99 chr1 165370400 . G C 27 . DP=6;VDB=0.0301;AF1=0.5;AC1=1;DP4=1,1,4,0;MQ=60;FQ=28.8;PV4=0.33,0.00068,1,1 GT:PL:GQ 0/1:57,0,62:59 chr1 165370475 . G C 80 . DP=21;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,1,9,2;MQ=60;FQ=83;PV4=1,3e-09,1,1 GT:PL:GQ 0/1:110,0,161:99 chr1 165376043 . T C 64 . DP=12;VDB=0.0384;AF1=0.5;AC1=1;DP4=3,2,6,1;MQ=60;FQ=67;PV4=0.52,1.4e-05,1,0.37 GT:PL:GQ 0/1:94,0,130:97 chr1 165377389 . T C 105 . DP=7;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:138,21,0:39 chr1 165377552 . G A 161 . DP=82;VDB=0.0322;AF1=1;AC1=2;DP4=1,2,40,37;MQ=59;FQ=-199;PV4=0.61,0.12,1,1 GT:PL:GQ 1/1:194,172,0:99 chr1 165378992 . C T 136 . DP=42;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,9,10,22;MQ=59;FQ=113;PV4=0.25,3.3e-21,1,0.45 GT:PL:GQ 0/1:166,0,140:99 chr1 165389285 . C G 90 . DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,23,9,14;MQ=60;FQ=93;PV4=1,6.7e-24,0.1,1 GT:PL:GQ 0/1:120,0,255:99 chr1 165601365 . T C 164 . DP=36;VDB=0.0164;AF1=0.5;AC1=1;DP4=12,12,5,6;MQ=60;FQ=167;PV4=1,1,1,1 GT:PL:GQ 0/1:194,0,255:99 chr1 165601466 . G A 179 . DP=35;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,14,17;MQ=60;FQ=-120 GT:PL:GQ 1/1:212,93,0:99 chr1 165621322 . TATTATCA TA 23.5 . INDEL;DP=32;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,18,0,7;MQ=53;FQ=26.5;PV4=0.55,0.011,6.5e-12,1 GT:PL:GQ 0/1:61,0,255:64 chr1 165623411 . C G 37.8 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:69,6,0:10 chr1 165623451 . C T 29 . DP=18;VDB=0.0066;AF1=0.5;AC1=1;DP4=7,0,11,0;MQ=60;FQ=32;PV4=1,1.9e-08,1,1 GT:PL:GQ 0/1:59,0,123:62 chr1 165623693 . G C 3.01 . DP=10;VDB=0.0049;AF1=0.4997;AC1=1;DP4=0,6,0,3;MQ=60;FQ=4.77;PV4=1,0.0032,1,1 GT:PL:GQ 0/1:30,0,121:28 chr1 165624799 . G T 39 . DP=10;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,3,0,7;MQ=60;FQ=40.3;PV4=1,6.5e-06,1,0.11 GT:PL:GQ 0/1:69,0,72:70 chr1 165630495 . T C 157 . DP=8;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-48 GT:PL:GQ 1/1:190,21,0:39 chr1 165630698 . A G 147 . DP=10;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:180,27,0:51 chr1 165634425 . C G 158 . DP=27;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,10,1,13;MQ=60;FQ=161;PV4=0.58,0.13,1,0.21 GT:PL:GQ 0/1:188,0,215:99 chr1 165636749 . A G 3.01 . DP=5;VDB=0.0196;AF1=0.4997;AC1=1;DP4=0,3,0,2;MQ=60;FQ=4.77;PV4=1,0.0044,1,1 GT:PL:GQ 0/1:30,0,68:28 chr1 165648559 . T G 32 . DP=5;VDB=0.0218;AF1=0.501;AC1=1;DP4=1,0,3,1;MQ=60;FQ=-4.76;PV4=1,0.00026,1,0.27 GT:PL:GQ 0/1:62,0,24:27 chr1 165648886 . G A 26 . DP=16;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,11,0,5;MQ=60;FQ=29;PV4=1,3e-05,1,0.069 GT:PL:GQ 0/1:56,0,165:59 chr1 165652273 . A G 176 . DP=88;VDB=0.0400;AF1=0.5;AC1=1;DP4=30,14,27,16;MQ=60;FQ=179;PV4=0.66,4.6e-31,1,0.42 GT:PL:GQ 0/1:206,0,255:99 chr1 165652445 . A G 21 . DP=16;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,8,0,7;MQ=58;FQ=24;PV4=1,4.7e-08,1,1 GT:PL:GQ 0/1:51,0,141:54 chr1 165697341 . G A 152 . DP=40;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,13,11,9;MQ=59;FQ=155;PV4=0.2,3.1e-14,0.083,1 GT:PL:GQ 0/1:182,0,255:99 chr1 165727274 . ctcttcttc ctcttc 217 . INDEL;DP=110;VDB=0.0380;AF1=0.5;AC1=1;DP4=33,34,19,17;MQ=58;FQ=217;PV4=0.84,1.3e-05,9.2e-05,0.4 GT:PL:GQ 0/1:255,0,255:99 chr1 165737704 . C G 211 . DP=85;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,44,36;MQ=60;FQ=-268 GT:PL:GQ 1/1:244,241,0:99 chr1 165859630 . C G 222 . DP=45;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,27;MQ=56;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 165859640 . GTGTTG GTGTTGTTG 217 . INDEL;DP=44;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,12,8,13;MQ=54;FQ=217;PV4=1,1,0.00049,1 GT:PL:GQ 0/1:255,0,255:99 chr1 166029970 . T C 119 . DP=30;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,24;MQ=59;FQ=-111 GT:PL:GQ 1/1:152,84,0:99 chr1 166039898 . C G 225 . DP=64;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,18,9,20;MQ=60;FQ=225;PV4=0.21,0.45,1,0.47 GT:PL:GQ 0/1:255,0,255:99 chr1 166124134 . A G 169 . DP=136;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,41,89;MQ=60;FQ=-282 GT:PL:GQ 1/1:202,255,0:99 chr1 166591043 . T C 31 . DP=21;VDB=0.0008;AF1=0.5;AC1=1;DP4=12,0,8,0;MQ=60;FQ=34;PV4=1,4.1e-10,1,0.42 GT:PL:GQ 0/1:61,0,172:64 chr1 166831703 . CAAA CAAAA 140 . INDEL;DP=15;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,5,2,8;MQ=60;FQ=40.5;PV4=0.52,1,1,1 GT:PL:GQ 0/1:178,0,75:78 chr1 166833199 . C A 47 . DP=48;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,23,2,17;MQ=59;FQ=50;PV4=0.68,1.1e-24,0.39,1 GT:PL:GQ 0/1:77,0,255:80 chr1 166838866 . AA AATTTTA 47.5 . INDEL;DP=7;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=53;FQ=50.5;PV4=1,1,0.031,1 GT:PL:GQ 0/1:85,0,167:88 chr1 166905927 . C T 225 . DP=61;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,17,17,10;MQ=60;FQ=225;PV4=0.31,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 166961857 . G A 13.2 . DP=11;VDB=0.0025;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=60;FQ=16.1;PV4=1,9.4e-05,1,1 GT:PL:GQ 0/1:43,0,97:46 chr1 166961995 . G A 225 . DP=111;VDB=0.0322;AF1=0.5;AC1=1;DP4=35,25,33,15;MQ=60;FQ=225;PV4=0.32,0.0088,0.44,1 GT:PL:GQ 0/1:255,0,255:99 chr1 166963234 . T C 73 . DP=30;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,1,14,7;MQ=60;FQ=76;PV4=0.38,2.9e-16,1,0.47 GT:PL:GQ 0/1:103,0,136:99 chr1 167059462 . G C 225 . DP=102;VDB=0.0345;AF1=0.5;AC1=1;DP4=29,16,34,20;MQ=59;FQ=225;PV4=1,0.015,0.34,0.15 GT:PL:GQ 0/1:255,0,255:99 chr1 167059575 . G T 225 . DP=101;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,35,11,32;MQ=60;FQ=225;PV4=0.28,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 167082869 . G A 32 . DP=82;VDB=0.0081;AF1=0.5;AC1=1;DP4=35,6,37,1;MQ=60;FQ=35;PV4=0.11,1e-38,1,0.36 GT:PL:GQ 0/1:62,0,255:65 chr1 167083068 . G A 59 . DP=89;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,47,2,30;MQ=60;FQ=62;PV4=0.2,7.8e-29,1,1 GT:PL:GQ 0/1:89,0,255:92 chr1 167094908 . G T 13 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr1 167095163 . G C 52 . DP=21;VDB=0.0373;AF1=0.5;AC1=1;DP4=7,4,6,2;MQ=60;FQ=55;PV4=1,2.8e-09,1,0.2 GT:PL:GQ 0/1:82,0,229:85 chr1 167097567 . G A 81 . DP=59;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,19,13,15;MQ=60;FQ=84;PV4=0.59,9.5e-30,1,1 GT:PL:GQ 0/1:111,0,255:99 chr1 167097739 . C A 139 . DP=40;VDB=0.0384;AF1=0.5;AC1=1;DP4=10,10,10,10;MQ=58;FQ=142;PV4=1,6.7e-14,0.018,0.32 GT:PL:GQ 0/1:169,0,255:99 chr1 167367193 . C T 25 . DP=54;VDB=0.0365;AF1=0.5;AC1=1;DP4=32,6,14,1;MQ=60;FQ=28;PV4=0.66,4.9e-16,1,1 GT:PL:GQ 0/1:55,0,255:58 chr1 167382374 . A C 3.54 . DP=15;VDB=0.0215;AF1=0.4998;AC1=1;DP4=3,9,1,2;MQ=60;FQ=5.47;PV4=1,0.016,1,1 GT:PL:GQ 0/1:31,0,230:30 chr1 167382399 . agtgtgtgtgtgtgtgtgtgtgtgtgtg agtgtgtgtgtgtgtgtgtgtgtg 38.5 . INDEL;DP=9;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,3,0,2;MQ=60;FQ=41.5;PV4=1,0.036,1,0.14 GT:PL:GQ 0/1:76,0,137:79 chr1 167403504 . A G 54 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:86,9,0:16 chr1 167404078 . G A 181 . DP=19;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,8;MQ=58;FQ=-81 GT:PL:GQ 1/1:214,54,0:99 chr1 167404179 . G A 6.2 . DP=9;VDB=0.0199;AF1=0.4999;AC1=1;DP4=1,4,1,2;MQ=59;FQ=8.65;PV4=1,0.063,0.11,1 GT:PL:GQ 0/1:35,0,108:36 chr1 167408670 . C T 77 . DP=37;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,17,6,8;MQ=60;FQ=80;PV4=0.12,1.5e-10,1,1 GT:PL:GQ 0/1:107,0,234:99 chr1 167487586 . C G 91 . DP=59;VDB=0.0322;AF1=0.5;AC1=1;DP4=27,5,21,4;MQ=59;FQ=94;PV4=1,2.8e-18,0.43,1 GT:PL:GQ 0/1:121,0,255:99 chr1 167515272 . T C 174 . DP=23;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,4;MQ=58;FQ=-90 GT:PL:GQ 1/1:207,63,0:99 chr1 167599583 . G A 74.2 . DP=8;VDB=0.0373;AF1=0.5207;AC1=1;DP4=1,0,6,1;MQ=60;FQ=-16.1;PV4=1,0.028,1,0.2 GT:PL:GQ 0/1:104,0,11:14 chr1 167652995 . C A 74 . DP=18;VDB=0.0033;AF1=0.5;AC1=1;DP4=7,1,8,1;MQ=59;FQ=77;PV4=1,4.1e-05,0.18,0.35 GT:PL:GQ 0/1:104,0,165:99 chr1 167666172 . T C 26 . DP=7;VDB=0.0011;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=29;PV4=1,0.00072,1,1 GT:PL:GQ 0/1:56,0,77:59 chr1 167666218 . C T 168 . DP=22;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,2,11,1;MQ=60;FQ=155;PV4=0.57,1,1,1 GT:PL:GQ 0/1:198,0,182:99 chr1 167666316 . T C 89 . DP=54;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,11,12,12;MQ=59;FQ=92;PV4=1,3e-18,0.18,0.23 GT:PL:GQ 0/1:119,0,255:99 chr1 167734717 . A G 121 . DP=16;VDB=0.0033;AF1=0.5;AC1=1;DP4=5,0,11,0;MQ=60;FQ=66;PV4=1,0.4,1,1 GT:PL:GQ 0/1:151,0,93:96 chr1 167778843 . G A 7.8 . DP=8;VDB=0.0080;AF1=0.5;AC1=1;DP4=5,0,3,0;MQ=60;FQ=10.4;PV4=1,0.00026,1,1 GT:PL:GQ 0/1:37,0,114:39 chr1 167787265 . C T 62 . DP=38;VDB=0.0042;AF1=0.5;AC1=1;DP4=19,0,18,0;MQ=59;FQ=65;PV4=1,4.9e-10,1,0.29 GT:PL:GQ 0/1:92,0,177:95 chr1 167792356 . G A 58 . DP=50;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,21,1,20;MQ=59;FQ=61;PV4=0.36,1.3e-17,1,1 GT:PL:GQ 0/1:88,0,255:91 chr1 167793670 . C T 94.3 . DP=5;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:127,15,0:27 chr1 167794130 . G A 170 . DP=22;VDB=0.0099;AF1=0.5;AC1=1;DP4=4,7,2,9;MQ=60;FQ=173;PV4=0.64,1,1,1 GT:PL:GQ 0/1:200,0,221:99 chr1 167806647 . T A 201 . DP=60;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,19,37;MQ=60;FQ=-196 GT:PL:GQ 1/1:234,169,0:99 chr1 167806696 . T C 222 . DP=29;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,5,24;MQ=60;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr1 167815167 . T C 106 . DP=51;VDB=0.0384;AF1=0.5;AC1=1;DP4=14,10,16,9;MQ=60;FQ=109;PV4=0.77,3.2e-19,1,0.21 GT:PL:GQ 0/1:136,0,255:99 chr1 167817639 . A G 225 . DP=46;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,6,19,6;MQ=59;FQ=225;PV4=0.73,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 167823512 . T C 59 . DP=26;VDB=0.0042;AF1=0.5;AC1=1;DP4=10,3,11,1;MQ=60;FQ=62;PV4=0.59,5.7e-12,1,0.34 GT:PL:GQ 0/1:89,0,238:92 chr1 167825485 . T C 225 . DP=137;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,53,24,31;MQ=60;FQ=225;PV4=0.37,0.00045,1,0.19 GT:PL:GQ 0/1:255,0,255:99 chr1 167825718 . C T 48 . DP=5;VDB=0.0089;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=32;PV4=1,0.21,1,0.35 GT:PL:GQ 0/1:78,0,59:62 chr1 167906239 . A C 58 . DP=3;VDB=0.0223;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:90,9,0:16 chr1 168013850 . T C 163 . DP=18;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,4,3,5;MQ=60;FQ=166;PV4=0.64,1,1,1 GT:PL:GQ 0/1:193,0,210:99 chr1 168014204 . T A 178 . DP=109;VDB=0.0400;AF1=0.5;AC1=1;DP4=25,28,25,28;MQ=60;FQ=181;PV4=1,2.8e-31,1,1 GT:PL:GQ 0/1:208,0,255:99 chr1 168035104 . G C 11.1 . DP=2;VDB=0.0173;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr1 168106716 . T C 163 . DP=49;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,6,35;MQ=59;FQ=-150 GT:PL:GQ 1/1:196,123,0:99 chr1 168200733 . T C 120 . DP=51;VDB=0.0298;AF1=1;AC1=2;DP4=1,0,13,12;MQ=58;FQ=-77;PV4=1,0.0015,0.39,0.16 GT:PL:GQ 1/1:153,50,0:97 chr1 168206118 . GTTTAATTTAA GTTTAA 141 . INDEL;DP=7;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,5;MQ=55;FQ=-49.5 GT:PL:GQ 1/1:181,15,0:27 chr1 168208308 . T C 222 . DP=60;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,32,27;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 168262289 . A G 83 . DP=21;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,20,0;MQ=59;FQ=-87 GT:PL:GQ 1/1:116,60,0:99 chr1 168262299 . C T 89 . DP=28;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,27,0;MQ=59;FQ=-108 GT:PL:GQ 1/1:122,81,0:99 chr1 168274201 . G A 97 . DP=25;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,20,3;MQ=60;FQ=-82;PV4=1,1,1,1 GT:PL:GQ 1/1:130,55,0:99 chr1 168278264 . G A 32.5 . DP=4;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:65,12,0:21 chr1 168282261 . T A 173 . DP=36;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,24;MQ=60;FQ=-129 GT:PL:GQ 1/1:206,102,0:99 chr1 168510122 . T A 21 . DP=18;VDB=0.0019;AF1=0.5;AC1=1;DP4=8,0,9,0;MQ=47;FQ=24;PV4=1,9.8e-12,8.6e-06,1 GT:PL:GQ 0/1:51,0,145:54 chr1 168511155 . T C 59 . DP=4;VDB=0.0030;AF1=0.5008;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-4.12;PV4=1,1,1,1 GT:PL:GQ 0/1:89,0,25:28 chr1 168513067 . C A 74 . DP=35;VDB=0.0359;AF1=0.5;AC1=1;DP4=17,3,8,5;MQ=49;FQ=77;PV4=0.21,2.2e-08,2.5e-09,1 GT:PL:GQ 0/1:104,0,240:99 chr1 168513109 . A G 146 . DP=30;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,5,3,9;MQ=49;FQ=149;PV4=0.025,1,2.9e-11,0.17 GT:PL:GQ 0/1:176,0,255:99 chr1 168545821 . G A 116 . DP=32;VDB=0.0066;AF1=0.5;AC1=1;DP4=13,1,15,3;MQ=49;FQ=119;PV4=0.61,6.7e-13,0.00021,1 GT:PL:GQ 0/1:146,0,191:99 chr1 168545864 . A G 23 . DP=67;VDB=0.0365;AF1=0.5;AC1=1;DP4=35,14,14,4;MQ=48;FQ=26;PV4=0.76,2.4e-23,3.2e-16,1 GT:PL:GQ 0/1:53,0,255:56 chr1 168545949 . G A 126 . DP=67;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,16,15,35;MQ=48;FQ=85;PV4=0.014,3e-24,0.23,0.039 GT:PL:GQ 0/1:156,0,112:99 chr1 168549422 . C T 82 . DP=25;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,9,3,9;MQ=59;FQ=85;PV4=1,3.9e-08,1,1 GT:PL:GQ 0/1:112,0,218:99 chr1 168550535 . A G 92 . DP=15;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,8,0,6;MQ=59;FQ=94.9;PV4=1,1,1,1 GT:PL:GQ 0/1:122,0,137:99 chr1 168665747 . C CT 214 . INDEL;DP=84;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,46,35;MQ=60;FQ=-279 GT:PL:GQ 1/1:255,244,0:99 chr1 168665974 . T C 19 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:51,9,0:15 chr1 168670138 . tgtgtgtgggtgtgtg tgtgtgtg 32.4 . INDEL;DP=4;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,3,0;MQ=29;FQ=-43.5 GT:PL:GQ 1/1:72,9,0:16 chr1 168683476 . C T 144 . DP=67;VDB=0.0345;AF1=0.5;AC1=1;DP4=26,5,27,7;MQ=60;FQ=147;PV4=0.75,8.1e-18,1,0.48 GT:PL:GQ 0/1:174,0,255:99 chr1 169080837 . C T 27 . DP=30;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,15,1,10;MQ=60;FQ=30;PV4=1,3.5e-17,1,0.35 GT:PL:GQ 0/1:57,0,255:60 chr1 169094100 . T A 47 . DP=54;VDB=0.0373;AF1=0.5;AC1=1;DP4=23,4,22,1;MQ=60;FQ=50;PV4=0.36,1.2e-23,1,0.45 GT:PL:GQ 0/1:77,0,255:80 chr1 169099061 . G A 37 . DP=8;VDB=0.0019;AF1=0.5;AC1=1;DP4=2,0,6,0;MQ=60;FQ=18.1;PV4=1,0.002,1,1 GT:PL:GQ 0/1:67,0,45:48 chr1 169102223 . G C 200 . DP=29;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,10,2,15;MQ=60;FQ=118;PV4=0.52,0.13,1,0.11 GT:PL:GQ 0/1:230,0,145:99 chr1 169138027 . A G 161 . DP=19;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,6,3,6;MQ=60;FQ=164;PV4=1,1,1,0.3 GT:PL:GQ 0/1:191,0,210:99 chr1 169138307 . C A 34 . DP=29;VDB=0.0216;AF1=0.5;AC1=1;DP4=13,5,7,4;MQ=59;FQ=37;PV4=0.69,2.7e-18,0.1,1 GT:PL:GQ 0/1:64,0,255:67 chr1 169138868 . C T 109 . DP=16;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,8,0,7;MQ=57;FQ=110;PV4=1,1,1,1 GT:PL:GQ 0/1:139,0,141:99 chr1 169200111 . C T 20 . DP=12;VDB=0.0284;AF1=0.5;AC1=1;DP4=0,6,1,5;MQ=58;FQ=23;PV4=1,1e-05,0.17,1 GT:PL:GQ 0/1:50,0,120:53 chr1 169216412 . C G 100 . DP=18;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,2,15;MQ=60;FQ=-78 GT:PL:GQ 1/1:133,51,0:99 chr1 169256501 . C T 35 . DP=43;VDB=0.0099;AF1=0.5;AC1=1;DP4=18,1,17,1;MQ=60;FQ=38;PV4=1,9.9e-19,1,0.3 GT:PL:GQ 0/1:65,0,216:68 chr1 169272299 . A T 40 . DP=22;VDB=0.0359;AF1=0.5;AC1=1;DP4=12,3,3,4;MQ=59;FQ=43;PV4=0.14,1.5e-12,0.074,0.035 GT:PL:GQ 0/1:70,0,255:73 chr1 169293721 . G A 62 . DP=52;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,22,2,23;MQ=59;FQ=65;PV4=1,3.1e-25,1,1 GT:PL:GQ 0/1:92,0,255:95 chr1 169345704 . G A 39 . DP=29;VDB=0.0099;AF1=0.5;AC1=1;DP4=16,0,13,0;MQ=59;FQ=42;PV4=1,8.8e-09,1,1 GT:PL:GQ 0/1:69,0,168:72 chr1 169351596 . A G 123 . DP=15;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,6,1,7;MQ=58;FQ=126;PV4=1,0.098,0.18,0.47 GT:PL:GQ 0/1:153,0,162:99 chr1 169390957 . A T 43 . DP=18;VDB=0.0305;AF1=0.5;AC1=1;DP4=5,4,5,3;MQ=57;FQ=46;PV4=1,3.1e-06,0.062,1 GT:PL:GQ 0/1:73,0,180:76 chr1 169391154 . A G 91 . DP=40;VDB=0.0343;AF1=0.5;AC1=1;DP4=11,8,7,10;MQ=60;FQ=94;PV4=0.51,1.3e-14,1,0.27 GT:PL:GQ 0/1:121,0,255:99 chr1 169394226 . A G 151 . DP=14;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,4,3,4;MQ=60;FQ=115;PV4=1,1,1,1 GT:PL:GQ 0/1:181,0,142:99 chr1 169435027 . C T 176 . DP=23;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,21,0;MQ=59;FQ=-90 GT:PL:GQ 1/1:209,63,0:99 chr1 169493953 . A C 222 . DP=36;VDB=0.0216;AF1=1;AC1=2;DP4=1,0,29,3;MQ=60;FQ=-88;PV4=1,0.42,1,0.39 GT:PL:GQ 1/1:255,61,0:99 chr1 169498834 . T C 86 . DP=17;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,17,0;MQ=60;FQ=-78 GT:PL:GQ 1/1:119,51,0:99 chr1 169510233 . G A 142 . DP=12;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,5,7;MQ=58;FQ=-63 GT:PL:GQ 1/1:175,36,0:69 chr1 169519049 . T C 198 . DP=37;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,27,10;MQ=60;FQ=-138 GT:PL:GQ 1/1:231,111,0:99 chr1 169525766 . T C 5.46 . DP=7;VDB=0.0116;AF1=0.4999;AC1=1;DP4=4,0,3,0;MQ=60;FQ=7.8;PV4=1,0.0047,1,1 GT:PL:GQ 0/1:34,0,91:34 chr1 169525808 . G A 6.98 . DP=18;VDB=0.0365;AF1=0.4999;AC1=1;DP4=8,1,6,0;MQ=60;FQ=9.53;PV4=1,9e-08,1,1 GT:PL:GQ 0/1:36,0,169:37 chr1 169528384 . G A 225 . DP=52;VDB=0.0216;AF1=0.5;AC1=1;DP4=23,3,22,4;MQ=59;FQ=225;PV4=1,0.26,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 169551682 . T C 64 . DP=13;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,3,5,2;MQ=60;FQ=67;PV4=0.59,1.1e-09,1,0.36 GT:PL:GQ 0/1:94,0,163:97 chr1 169559326 . G A 55 . DP=30;VDB=0.0081;AF1=0.5;AC1=1;DP4=10,0,18,0;MQ=59;FQ=58;PV4=1,2.3e-18,0.23,1 GT:PL:GQ 0/1:85,0,146:88 chr1 169559333 . ATTTTT ATTTT 21.5 . INDEL;DP=34;VDB=0.0081;AF1=0.5;AC1=1;DP4=11,0,22,0;MQ=59;FQ=6.52;PV4=1,1.3e-16,0.24,0.49 GT:PL:GQ 0/1:59,0,40:43 chr1 169560727 . TAAAAAAAAAAAA TAAAAAAAAAAAAAAA,TAAAAAAAAAAAAAA,TAAAAAAAAAAAAA 5.77 . INDEL;DP=13;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,2,9;MQ=53;FQ=-43.5 GT:PL:GQ 1/1:78,43,34,50,0,38,82,32,36,70:9 chr1 169563062 . G A 46 . DP=19;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,7,0,9;MQ=60;FQ=49;PV4=0.47,5.9e-07,1,1 GT:PL:GQ 0/1:76,0,160:79 chr1 169564130 . T G 79 . DP=21;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,15,0,6;MQ=59;FQ=82;PV4=1,1,1,1 GT:PL:GQ 0/1:109,0,179:99 chr1 169564167 . G C 97 . DP=9;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,2,0,6;MQ=57;FQ=20.1;PV4=1,1,0.3,1 GT:PL:GQ 0/1:127,0,47:50 chr1 169566313 . C T 222 . DP=60;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,13,44;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr1 169572543 . ctctgt ct 34.5 . INDEL;DP=8;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,3,0,2;MQ=60;FQ=37.3;PV4=1,1,1,0.33 GT:PL:GQ 0/1:72,0,86:75 chr1 169580717 . T C 180 . DP=20;VDB=0.0099;AF1=0.5;AC1=1;DP4=8,1,9,2;MQ=59;FQ=147;PV4=1,0.069,1,0.3 GT:PL:GQ 0/1:210,0,174:99 chr1 169580972 . CA CATA 217 . INDEL;DP=22;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,7,0,13;MQ=60;FQ=183;PV4=0.38,1,1,0.42 GT:PL:GQ 0/1:255,0,218:99 chr1 169599254 . T C 111 . DP=134;VDB=0.0322;AF1=0.5;AC1=1;DP4=39,19,44,29;MQ=60;FQ=114;PV4=0.47,8e-57,0.19,1 GT:PL:GQ 0/1:141,0,255:99 chr1 169660781 . A G 86 . DP=58;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,9,19,3;MQ=60;FQ=89;PV4=0.33,7.4e-15,1,1 GT:PL:GQ 0/1:116,0,255:99 chr1 169665632 . T C 222 . DP=34;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,11,6,8;MQ=60;FQ=223;PV4=1,0.27,1,0.44 GT:PL:GQ 0/1:252,0,255:99 chr1 169672595 . G A 8.64 . DP=24;VDB=0.0014;AF1=0.5;AC1=1;DP4=2,5,0,6;MQ=60;FQ=11.3;PV4=0.46,0.0029,1,1 GT:PL:GQ 0/1:38,0,131:40 chr1 169676486 . A G 129 . DP=62;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,13,16,11;MQ=58;FQ=132;PV4=1,8.4e-17,0.26,1 GT:PL:GQ 0/1:159,0,255:99 chr1 169679553 . C T 190 . DP=37;VDB=0.0271;AF1=0.5;AC1=1;DP4=12,5,18,2;MQ=59;FQ=193;PV4=0.21,1,0.18,1 GT:PL:GQ 0/1:220,0,251:99 chr1 169698825 . T G 97 . DP=101;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,31,21,24;MQ=60;FQ=100;PV4=0.68,5.7e-47,1,1 GT:PL:GQ 0/1:127,0,255:99 chr1 169699819 . G A 37 . DP=24;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,9,1,13;MQ=60;FQ=40;PV4=1,3.2e-12,1,1 GT:PL:GQ 0/1:67,0,162:70 chr1 169768033 . T C 161 . DP=23;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,2,10,1;MQ=59;FQ=164;PV4=1,1,0.16,0.35 GT:PL:GQ 0/1:191,0,203:99 chr1 169768080 . C A 101 . DP=36;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,8,10,6;MQ=60;FQ=104;PV4=0.73,3.5e-14,1,1 GT:PL:GQ 0/1:131,0,255:99 chr1 169819605 . A G 29 . DP=17;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,9,0,6;MQ=60;FQ=32;PV4=0.51,7.8e-08,1,1 GT:PL:GQ 0/1:59,0,222:62 chr1 169823660 . C T 225 . DP=88;VDB=0.0398;AF1=0.5;AC1=1;DP4=26,28,10,20;MQ=59;FQ=225;PV4=0.25,0.095,0.028,0.35 GT:PL:GQ 0/1:255,0,255:99 chr1 169823718 . T C 109 . DP=67;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,21,17,12;MQ=60;FQ=112;PV4=0.22,3.3e-25,1,1 GT:PL:GQ 0/1:139,0,255:99 chr1 169831993 . A G 53 . DP=21;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,9,2,8;MQ=60;FQ=56;PV4=1,1.5e-09,1,0.13 GT:PL:GQ 0/1:83,0,204:86 chr1 169838278 . G A 44 . DP=16;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,9,2,5;MQ=60;FQ=47;PV4=0.17,6.7e-11,1,1 GT:PL:GQ 0/1:74,0,156:77 chr1 169890933 . A G 133 . DP=77;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,19,51;MQ=60;FQ=-238 GT:PL:GQ 1/1:166,211,0:99 chr1 169923041 . GTTTTTT GTTTTTTT 16.6 . INDEL;DP=19;VDB=0.0190;AF1=0.5;AC1=1;DP4=8,1,9,1;MQ=59;FQ=14.2;PV4=1,1,1,1 GT:PL:GQ 0/1:54,0,50:52 chr1 169941761 . A T 70.1 . DP=8;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:103,21,0:39 chr1 169947146 . CAAAAAAAAAAA CAAAAAAAAAAAA,CAAAAAAAAAAAAA 3.8 . INDEL;DP=18;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,13,3;MQ=60;FQ=-70.5;PV4=1,1,1,0.2 GT:PL:GQ 1/1:42,36,0,39,30,37:34 chr1 169952385 . G T 55 . DP=12;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:88,36,0:69 chr1 170135669 . C T 222 . DP=26;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,17,7;MQ=59;FQ=-73;PV4=1,0.26,1,0.21 GT:PL:GQ 1/1:255,46,0:89 chr1 170135760 . T C 118 . DP=52;VDB=0.0298;AF1=1;AC1=2;DP4=0,1,37,10;MQ=59;FQ=-142;PV4=0.23,3.1e-07,1,0.27 GT:PL:GQ 1/1:151,115,0:99 chr1 170135765 . T C 80 . DP=52;VDB=0.0298;AF1=1;AC1=2;DP4=0,1,34,10;MQ=59;FQ=-133;PV4=0.24,2.5e-09,1,0.29 GT:PL:GQ 1/1:113,106,0:99 chr1 170501385 . A C 222 . DP=17;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,7;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 170501456 . C T 106 . DP=19;VDB=0.0322;AF1=1;AC1=2;DP4=0,1,11,7;MQ=60;FQ=-45;PV4=0.42,1.3e-05,1,1 GT:PL:GQ 1/1:139,18,0:33 chr1 171061990 . A G 64 . DP=7;VDB=0.0236;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=57;FQ=44;PV4=1,0.48,1,0.23 GT:PL:GQ 0/1:94,0,71:74 chr1 171070472 . G T 62 . DP=9;VDB=0.0110;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=60;FQ=65;PV4=1,0.17,1,0.17 GT:PL:GQ 0/1:92,0,121:95 chr1 171070832 . C T 225 . DP=66;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,14,26,14;MQ=60;FQ=225;PV4=0.13,0.05,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 171072862 . G T 140 . DP=48;VDB=0.0140;AF1=0.5;AC1=1;DP4=24,3,18,0;MQ=59;FQ=143;PV4=0.26,1,0.11,1 GT:PL:GQ 0/1:170,0,255:99 chr1 171076966 . G A 103 . DP=115;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,31,20,42;MQ=59;FQ=106;PV4=0.84,6.4e-49,0.36,1 GT:PL:GQ 0/1:133,0,255:99 chr1 171077198 . G A 192 . DP=48;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,6,20,2;MQ=60;FQ=195;PV4=0.25,0.029,1,0.13 GT:PL:GQ 0/1:222,0,255:99 chr1 171083174 . C T 225 . DP=85;VDB=0.0345;AF1=0.5;AC1=1;DP4=40,8,32,4;MQ=60;FQ=225;PV4=0.54,0.32,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 171083242 . A G 142 . DP=111;VDB=0.0392;AF1=0.5;AC1=1;DP4=32,26,30,21;MQ=60;FQ=145;PV4=0.85,1.8e-36,0.46,1 GT:PL:GQ 0/1:172,0,255:99 chr1 171083537 . T C 62 . DP=7;VDB=0.0005;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=54.6;PV4=1,0.13,1,0.00028 GT:PL:GQ 0/1:92,0,82:85 chr1 171085314 . ATT ATTT 99.5 . INDEL;DP=15;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,2,5,1;MQ=60;FQ=102;PV4=1,1,1,0.35 GT:PL:GQ 0/1:137,0,164:99 chr1 171112490 . C T 192 . DP=39;VDB=0.0066;AF1=0.5;AC1=1;DP4=4,17,2,16;MQ=60;FQ=195;PV4=0.67,0.033,1,0.078 GT:PL:GQ 0/1:222,0,255:99 chr1 171115483 . A G 56 . DP=37;VDB=0.0118;AF1=0.5;AC1=1;DP4=20,1,15,0;MQ=59;FQ=59;PV4=1,2.7e-13,1,0.3 GT:PL:GQ 0/1:86,0,212:89 chr1 171115567 . G A 51 . DP=107;VDB=0.0399;AF1=0.5;AC1=1;DP4=31,26,22,15;MQ=60;FQ=54;PV4=0.67,3.4e-44,1,0.18 GT:PL:GQ 0/1:81,0,255:84 chr1 171115645 . G T 159 . DP=87;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,34,12,30;MQ=60;FQ=162;PV4=0.46,6.2e-35,1,0.038 GT:PL:GQ 0/1:189,0,255:99 chr1 171116760 . C T 93 . DP=54;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,10,18,7;MQ=60;FQ=96;PV4=0.56,1.6e-16,1,1 GT:PL:GQ 0/1:123,0,255:99 chr1 171118840 . G A 70 . DP=12;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,7,0,5;MQ=60;FQ=73;PV4=1,0.11,1,0.095 GT:PL:GQ 0/1:100,0,138:99 chr1 171121173 . A G 225 . DP=140;VDB=0.0345;AF1=0.5;AC1=1;DP4=47,30,43,16;MQ=60;FQ=225;PV4=0.2,0.37,1,0.36 GT:PL:GQ 0/1:255,0,255:99 chr1 171121268 . G A 118 . DP=188;VDB=0.0380;AF1=0.5;AC1=1;DP4=46,50,40,46;MQ=60;FQ=121;PV4=0.88,4.5e-75,0.067,1 GT:PL:GQ 0/1:148,0,255:99 chr1 171121421 . G T 28 . DP=54;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,25,0,23;MQ=60;FQ=31;PV4=0.12,5.8e-30,1,1 GT:PL:GQ 0/1:58,0,255:61 chr1 171227216 . T C 137 . DP=20;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,5,6,2;MQ=60;FQ=140;PV4=0.64,1,1,1 GT:PL:GQ 0/1:167,0,243:99 chr1 171254794 . C T 15.9 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:47,6,0:10 chr1 171300959 . T C 53 . DP=18;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,9,1,6;MQ=60;FQ=56;PV4=1,6.1e-07,1,1 GT:PL:GQ 0/1:83,0,208:86 chr1 171301033 . C G 54 . DP=8;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=55.3;PV4=1,0.29,1,0.32 GT:PL:GQ 0/1:84,0,87:85 chr1 171303925 . C T 73 . DP=69;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,33,8,16;MQ=60;FQ=76;PV4=0.57,2.1e-20,1,1 GT:PL:GQ 0/1:103,0,255:99 chr1 171311003 . A C 18.1 . DP=58;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,23,1,19;MQ=60;FQ=21;PV4=0.0053,5.3e-28,0.085,1 GT:PL:GQ 0/1:48,0,255:51 chr1 171496895 . A G 8.61 . DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:40,9,0:12 chr1 171509327 . G A 225 . DP=111;VDB=0.0392;AF1=0.5;AC1=1;DP4=35,25,27,21;MQ=60;FQ=225;PV4=0.85,0.0025,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 171511039 . C G 48 . DP=106;VDB=0.0365;AF1=0.5;AC1=1;DP4=32,24,22,23;MQ=60;FQ=51;PV4=0.43,1e-45,0.44,1 GT:PL:GQ 0/1:78,0,255:81 chr1 171511442 . A G 124 . DP=14;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,5,0,9;MQ=60;FQ=81;PV4=1,0.12,1,0.27 GT:PL:GQ 0/1:154,0,108:99 chr1 171514731 . C G 190 . DP=38;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,15,7,5;MQ=60;FQ=193;PV4=0.48,1,1,1 GT:PL:GQ 0/1:220,0,255:99 chr1 171519487 . A C 64 . DP=14;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,4,1,7;MQ=60;FQ=62.3;PV4=1,7.3e-08,1,0.35 GT:PL:GQ 0/1:94,0,91:92 chr1 171526570 . G A 190 . DP=245;VDB=0.0392;AF1=0.5;AC1=1;DP4=59,57,54,68;MQ=60;FQ=193;PV4=0.36,5e-62,1,1 GT:PL:GQ 0/1:220,0,255:99 chr1 171527322 . A G 52 . DP=28;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,14,0,14;MQ=60;FQ=55;PV4=1,4.7e-14,1,0.16 GT:PL:GQ 0/1:82,0,173:85 chr1 171546833 . C A 208 . DP=56;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,27,2,22;MQ=59;FQ=194;PV4=0.59,1,0.46,1 GT:PL:GQ 0/1:238,0,221:99 chr1 171548617 . G A 124 . DP=123;VDB=0.0322;AF1=0.5;AC1=1;DP4=20,36,23,42;MQ=60;FQ=127;PV4=1,1.4e-39,1,0.41 GT:PL:GQ 0/1:154,0,255:99 chr1 171548868 . T C 14.2 . DP=10;VDB=0.0066;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=57;FQ=17.1;PV4=1,0.018,1,0.38 GT:PL:GQ 0/1:44,0,65:47 chr1 171556165 . G C 139 . DP=87;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,20,21,21;MQ=59;FQ=142;PV4=1,2e-27,0.16,0.4 GT:PL:GQ 0/1:169,0,255:99 chr1 171558516 . C T 120 . DP=52;VDB=0.0099;AF1=0.5;AC1=1;DP4=12,5,24,8;MQ=60;FQ=123;PV4=0.75,1e-18,1,1 GT:PL:GQ 0/1:150,0,247:99 chr1 171607702 . C T 225 . DP=47;VDB=0.0164;AF1=0.5;AC1=1;DP4=18,11,13,5;MQ=60;FQ=225;PV4=0.54,0.24,0.1,0.032 GT:PL:GQ 0/1:255,0,255:99 chr1 171810762 . G A 7.8 . DP=6;VDB=0.0176;AF1=0.5;AC1=1;DP4=2,2,1,1;MQ=60;FQ=10.4;PV4=1,0.086,1,1 GT:PL:GQ 0/1:37,0,97:39 chr1 171956803 . C T 126 . DP=67;VDB=0.0271;AF1=0.5;AC1=1;DP4=19,3,38,6;MQ=60;FQ=129;PV4=1,1.6e-26,1,1 GT:PL:GQ 0/1:156,0,219:99 chr1 172007676 . G C 209 . DP=40;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,18,2,19;MQ=60;FQ=153;PV4=0.49,0.051,1,0.02 GT:PL:GQ 0/1:239,0,180:99 chr1 172277925 . C T 109 . DP=19;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,6,4,8;MQ=59;FQ=103;PV4=0.6,1.5e-05,1,1 GT:PL:GQ 0/1:139,0,130:99 chr1 172356437 . A G 180 . DP=28;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,24;MQ=60;FQ=-108 GT:PL:GQ 1/1:213,81,0:99 chr1 172399344 . T C 225 . DP=68;VDB=0.0244;AF1=0.5;AC1=1;DP4=23,2,31,10;MQ=60;FQ=192;PV4=0.11,0.037,0.22,1 GT:PL:GQ 0/1:255,0,219:99 chr1 172399596 . T G 12.3 . DP=9;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,4,0,5;MQ=57;FQ=15.1;PV4=1,9.5e-07,0.2,1 GT:PL:GQ 0/1:42,0,100:44 chr1 172410967 . G A 147 . DP=37;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,29,7;MQ=60;FQ=-135 GT:PL:GQ 1/1:180,108,0:99 chr1 172417781 . A G 33.5 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:66,12,0:21 chr1 172425529 . C G 222 . DP=177;VDB=0.0365;AF1=1;AC1=2;DP4=1,1,77,93;MQ=60;FQ=-282;PV4=1,7.1e-07,1,0.16 GT:PL:GQ 1/1:255,255,0:99 chr1 172431210 . G A 37.3 . DP=6;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:70,15,0:27 chr1 172434375 . G A 119 . DP=39;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,33,1;MQ=59;FQ=-129 GT:PL:GQ 1/1:152,102,0:99 chr1 172434812 . C T 186 . DP=66;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,21,39;MQ=60;FQ=-208 GT:PL:GQ 1/1:219,181,0:99 chr1 172437592 . G A 162 . DP=37;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,24,11;MQ=59;FQ=-132 GT:PL:GQ 1/1:195,105,0:99 chr1 172501643 . T C 114 . DP=60;VDB=0.0400;AF1=0.5;AC1=1;DP4=25,10,20,4;MQ=58;FQ=117;PV4=0.36,8.3e-19,1,1 GT:PL:GQ 0/1:144,0,255:99 chr1 172502479 . T C 102 . DP=17;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,14,2;MQ=60;FQ=-75 GT:PL:GQ 1/1:135,48,0:93 chr1 172502727 . TA T 160 . INDEL;DP=23;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,9,2,9;MQ=60;FQ=155;PV4=1,1.2e-08,1,0.25 GT:PL:GQ 0/1:198,0,190:99 chr1 172544877 . A C 12.4 . DP=4;VDB=0.0060;AF1=0.5101;AC1=1;DP4=0,1,0,3;MQ=60;FQ=-13.2;PV4=1,0.0099,1,1 GT:PL:GQ 0/1:42,0,14:17 chr1 172547465 . A G 158 . DP=85;VDB=0.0392;AF1=0.5;AC1=1;DP4=24,24,22,15;MQ=59;FQ=161;PV4=0.51,4.8e-26,1,0.15 GT:PL:GQ 0/1:188,0,255:99 chr1 172558524 . A G 225 . DP=97;VDB=0.0365;AF1=0.5;AC1=1;DP4=27,24,20,26;MQ=60;FQ=225;PV4=0.42,1,1,0.35 GT:PL:GQ 0/1:255,0,255:99 chr1 172578018 . AGGTAATTACCTTTAAGTAGTCCT A 9.04 . INDEL;DP=12;VDB=0.0392;AF1=0.5;AC1=1;DP4=0,7,0,3;MQ=50;FQ=11.8;PV4=1,1,0.0026,1 GT:PL:GQ 0/1:46,0,223:48 chr1 172634734 . T C 159 . DP=28;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,24,4;MQ=60;FQ=-111 GT:PL:GQ 1/1:192,84,0:99 chr1 173157764 . G A 135 . DP=18;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,6,4,3;MQ=60;FQ=138;PV4=0.64,0.31,1,0.45 GT:PL:GQ 0/1:165,0,229:99 chr1 173174389 . G A 225 . DP=71;VDB=0.0365;AF1=0.5;AC1=1;DP4=25,8,33,4;MQ=60;FQ=225;PV4=0.2,0.034,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr1 173470105 . A G 112 . DP=23;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,6,9,4;MQ=60;FQ=115;PV4=0.22,7.7e-09,1,0.28 GT:PL:GQ 0/1:142,0,210:99 chr1 173556699 . G T 12 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr1 173606179 . A T 32 . DP=20;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,9,0,10;MQ=59;FQ=35;PV4=1,8.3e-13,1,0.051 GT:PL:GQ 0/1:62,0,149:65 chr1 173839907 . C T 170 . DP=60;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,22,12,18;MQ=60;FQ=173;PV4=0.091,1.4e-13,1,1 GT:PL:GQ 0/1:200,0,255:99 chr1 173941617 . T C 144 . DP=84;VDB=0.0345;AF1=0.5;AC1=1;DP4=35,6,31,8;MQ=59;FQ=147;PV4=0.56,1.9e-19,0.49,0.46 GT:PL:GQ 0/1:174,0,255:99 chr1 173961837 . cagagagagagagagagagag cagagagagagagagagag 14.6 . INDEL;DP=18;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,0,2,0;MQ=54;FQ=17.6;PV4=1,0.26,1,1 GT:PL:GQ 0/1:52,0,136:55 chr1 174417231 . G A 222 . DP=54;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,43,10;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr1 174927388 . G C 137 . DP=8;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,8;MQ=57;FQ=-51 GT:PL:GQ 1/1:170,24,0:45 chr1 174945171 . CTGTATGACTGTGATGTATGACTGTGATG CTGTATGACTGTGATG 135 . INDEL;DP=94;VDB=0.0345;AF1=0.5;AC1=1;DP4=32,22,14,7;MQ=54;FQ=138;PV4=0.61,0.0065,2.2e-45,1 GT:PL:GQ 0/1:173,0,255:99 chr1 174969271 . C T 62 . DP=21;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,6,5,4;MQ=60;FQ=65;PV4=1,1.1e-08,1,1 GT:PL:GQ 0/1:92,0,226:95 chr1 175046488 . G A 109 . DP=12;VDB=0.0053;AF1=0.5;AC1=1;DP4=6,0,5,1;MQ=58;FQ=90;PV4=1,1,0.17,0.4 GT:PL:GQ 0/1:139,0,117:99 chr1 175046789 . A G 71 . DP=77;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,23,10,16;MQ=59;FQ=74;PV4=0.33,3.9e-22,1,1 GT:PL:GQ 0/1:101,0,255:99 chr1 175052828 . G A 9.53 . DP=6;VDB=0.0002;AF1=0.501;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-4.85;PV4=1,0.00049,1,1 GT:PL:GQ 0/1:39,0,24:28 chr1 175053101 . A T 77 . DP=63;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,31,2,27;MQ=60;FQ=80;PV4=1,1.9e-21,0.14,1 GT:PL:GQ 0/1:107,0,243:99 chr1 175054548 . C T 70 . DP=31;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,2,10,3;MQ=60;FQ=73;PV4=0.63,4.3e-07,1,1 GT:PL:GQ 0/1:100,0,201:99 chr1 175086461 . A G 24 . DP=4;VDB=0.0192;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=24;PV4=1,1,1,1 GT:PL:GQ 0/1:54,0,54:54 chr1 175087677 . G A 178 . DP=71;VDB=0.0400;AF1=0.5;AC1=1;DP4=23,14,19,13;MQ=59;FQ=181;PV4=1,3.1e-18,0.46,0.3 GT:PL:GQ 0/1:208,0,255:99 chr1 175087729 . T C 180 . DP=86;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,25,20,24;MQ=60;FQ=183;PV4=0.51,6.5e-20,1,0.42 GT:PL:GQ 0/1:210,0,255:99 chr1 175092631 . A C 134 . DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,15,7,15;MQ=60;FQ=137;PV4=0.39,2.1e-11,0.13,0.089 GT:PL:GQ 0/1:164,0,255:99 chr1 175092674 . C T 222 . DP=39;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,19,18;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 175092707 . C T 222 . DP=50;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,34,15;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 175092840 . T C 215 . DP=47;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,6,38;MQ=60;FQ=-159 GT:PL:GQ 1/1:248,132,0:99 chr1 175097331 . G A 222 . DP=20;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,6,14;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr1 175097349 . C T 154 . DP=18;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,14;MQ=60;FQ=-78 GT:PL:GQ 1/1:187,51,0:99 chr1 175105880 . G A 64 . DP=19;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,18,0;MQ=60;FQ=-81 GT:PL:GQ 1/1:97,54,0:99 chr1 175105942 . G A 222 . DP=50;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,41,8;MQ=59;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 175113578 . T C 222 . DP=47;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,29,17;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 175116252 . C G 77 . DP=9;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,1,8;MQ=57;FQ=-54 GT:PL:GQ 1/1:110,27,0:51 chr1 175129955 . G T 45.3 . DP=7;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,3,2;MQ=44;FQ=-42 GT:PL:GQ 1/1:78,15,0:27 chr1 175299301 . T C 175 . DP=34;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,23,8;MQ=60;FQ=-120 GT:PL:GQ 1/1:208,93,0:99 chr1 175324518 . GCA G 214 . INDEL;DP=24;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,20,4;MQ=52;FQ=-107 GT:PL:GQ 1/1:255,72,0:99 chr1 175324651 . A G 222 . DP=95;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,40,51;MQ=57;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 175335234 . C T 153 . DP=68;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,21,12,16;MQ=60;FQ=156;PV4=0.79,4.3e-14,1,1 GT:PL:GQ 0/1:183,0,255:99 chr1 175335412 . A C 10.2 . DP=2;VDB=0.0178;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:41,6,0:8 chr1 175336292 . C A 21 . DP=7;VDB=0.0027;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=23.2;PV4=1,0.0033,1,0.2 GT:PL:GQ 0/1:51,0,58:53 chr1 175336305 . G C 26 . DP=10;VDB=0.0019;AF1=0.5;AC1=1;DP4=3,0,6,0;MQ=60;FQ=29;PV4=1,3.3e-06,1,0.049 GT:PL:GQ 0/1:56,0,74:59 chr1 175336530 . T C 157 . DP=20;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,16;MQ=60;FQ=-87 GT:PL:GQ 1/1:190,60,0:99 chr1 175348723 . C T 19.1 . DP=16;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,0,6,1;MQ=60;FQ=22;PV4=0.44,1.3e-06,1,0.18 GT:PL:GQ 0/1:49,0,151:52 chr1 175355128 . C G 174 . DP=30;VDB=0.0118;AF1=0.5;AC1=1;DP4=10,4,15,1;MQ=60;FQ=177;PV4=0.16,1,1,1 GT:PL:GQ 0/1:204,0,244:99 chr1 175355391 . A G 141 . DP=39;VDB=0.0398;AF1=0.5;AC1=1;DP4=8,11,8,12;MQ=60;FQ=144;PV4=1,1.1e-13,1,0.014 GT:PL:GQ 0/1:171,0,255:99 chr1 175360690 . C T 150 . DP=22;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,7,0,14;MQ=59;FQ=123;PV4=0.36,1,0.23,1 GT:PL:GQ 0/1:180,0,150:99 chr1 175365663 . G A 126 . DP=72;VDB=0.0399;AF1=0.5;AC1=1;DP4=25,7,23,14;MQ=60;FQ=129;PV4=0.19,6.7e-24,1,1 GT:PL:GQ 0/1:156,0,255:99 chr1 175375334 . C T 97 . DP=14;VDB=0.0118;AF1=0.5;AC1=1;DP4=7,0,7,0;MQ=60;FQ=99.2;PV4=1,0.16,1,1 GT:PL:GQ 0/1:127,0,134:99 chr1 175375469 . C A 151 . DP=91;VDB=0.0345;AF1=0.5;AC1=1;DP4=36,17,20,15;MQ=60;FQ=154;PV4=0.37,1.3e-24,1,1 GT:PL:GQ 0/1:181,0,255:99 chr1 175375683 . T C 225 . DP=96;VDB=0.0345;AF1=0.5;AC1=1;DP4=40,21,19,14;MQ=60;FQ=225;PV4=0.51,1,0.33,1 GT:PL:GQ 0/1:255,0,255:99 chr1 175375802 . T C 225 . DP=130;VDB=0.0365;AF1=0.5;AC1=1;DP4=32,32,36,22;MQ=60;FQ=225;PV4=0.2,0.43,0.47,1 GT:PL:GQ 0/1:255,0,255:99 chr1 175916267 . T C 154 . DP=25;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,22,3;MQ=60;FQ=-102 GT:PL:GQ 1/1:187,75,0:99 chr1 175937540 . C T 222 . DP=73;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,63,10;MQ=59;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr1 175951347 . T A 40.5 . DP=4;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:73,12,0:21 chr1 176012807 . G A 116 . DP=6;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:149,18,0:33 chr1 176102974 . T C 211 . DP=19;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,3,7,4;MQ=60;FQ=143;PV4=1,0.47,1,1 GT:PL:GQ 0/1:241,0,170:99 chr1 176103053 . TACACA TACA 175 . INDEL;DP=17;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,5,3,3;MQ=60;FQ=178;PV4=1,0.03,1,1 GT:PL:GQ 0/1:213,0,255:99 chr1 176129276 . G A 79 . DP=28;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,3,10,4;MQ=56;FQ=82;PV4=1,1.5e-12,1,0.48 GT:PL:GQ 0/1:109,0,224:99 chr1 176153658 . T C 201 . DP=9;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,7,2;MQ=60;FQ=-54 GT:PL:GQ 1/1:234,27,0:51 chr1 176659463 . C T 169 . DP=79;VDB=0.0398;AF1=1;AC1=2;DP4=1,1,32,38;MQ=60;FQ=-189;PV4=1,0.0029,0.43,1 GT:PL:GQ 1/1:202,162,0:99 chr1 176664842 . C A 211 . DP=29;VDB=0.0298;AF1=1;AC1=2;DP4=1,0,19,9;MQ=58;FQ=-89;PV4=1,1,1,0.24 GT:PL:GQ 1/1:244,62,0:99 chr1 176681165 . Atgtgtgtgtgtgtgtgtgtgtgtgtgtgt Atgtgtgtgtgtgtgtgtgtgtgtgtgt 200 . INDEL;DP=22;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-73.5 GT:PL:GQ 1/1:241,39,0:75 chr1 176734756 . C T 150 . DP=35;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,30,3;MQ=59;FQ=-126 GT:PL:GQ 1/1:183,99,0:99 chr1 176769358 . T C 160 . DP=19;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,7,11;MQ=60;FQ=-81 GT:PL:GQ 1/1:193,54,0:99 chr1 176809368 . C T 225 . DP=66;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,17,13,22;MQ=59;FQ=225;PV4=1,0.15,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 176845528 . C T 158 . DP=11;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:191,30,0:57 chr1 176857347 . A G 158 . DP=19;VDB=0.0343;AF1=1;AC1=2;DP4=0,0,4,13;MQ=60;FQ=-78 GT:PL:GQ 1/1:191,51,0:99 chr1 176863836 . G C 222 . DP=45;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,26,19;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 176863867 . T C 222 . DP=53;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,21,31;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 176992553 . A G 225 . DP=39;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,7,11,12;MQ=60;FQ=175;PV4=1,1,1,0.41 GT:PL:GQ 0/1:255,0,202:99 chr1 176992676 . C T 83 . DP=12;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,3,2,6;MQ=60;FQ=67.9;PV4=1,0.0016,1,0.47 GT:PL:GQ 0/1:113,0,95:98 chr1 177199323 . C T 36 . DP=22;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,12,1,6;MQ=59;FQ=39;PV4=1,2.2e-08,1,1 GT:PL:GQ 0/1:66,0,231:69 chr1 177898799 . C T 30 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:62,9,0:16 chr1 177899121 . G C 10.4 . DP=9;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,3,0,5;MQ=60;FQ=13.2;PV4=0.44,0.00022,1,1 GT:PL:GQ 0/1:40,0,99:42 chr1 177901619 . G A 148 . DP=23;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,3,11,2;MQ=59;FQ=131;PV4=0.61,0.33,0.21,1 GT:PL:GQ 0/1:178,0,158:99 chr1 177901655 . G A 116 . DP=39;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,7,13,6;MQ=59;FQ=119;PV4=1,9.5e-10,0.16,0.21 GT:PL:GQ 0/1:146,0,255:99 chr1 177901658 . C T 98 . DP=42;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,7,12,8;MQ=59;FQ=101;PV4=1,2.4e-15,0.16,0.28 GT:PL:GQ 0/1:128,0,255:99 chr1 177901713 . T C 222 . DP=64;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,36,28;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr1 177901741 . A G 207 . DP=59;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,30;MQ=60;FQ=-196 GT:PL:GQ 1/1:240,169,0:99 chr1 177902387 . C A 225 . DP=71;VDB=0.0398;AF1=0.5;AC1=1;DP4=30,5,21,11;MQ=59;FQ=225;PV4=0.084,0.21,1,0.35 GT:PL:GQ 0/1:255,0,255:99 chr1 177902482 . G A 135 . DP=59;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,25,6,17;MQ=59;FQ=138;PV4=0.78,8.8e-07,1,1 GT:PL:GQ 0/1:165,0,255:99 chr1 177902725 . C T 154 . DP=66;VDB=0.0271;AF1=0.5;AC1=1;DP4=24,10,22,9;MQ=59;FQ=157;PV4=1,9.5e-24,0.068,1 GT:PL:GQ 0/1:184,0,255:99 chr1 177902753 . G C 222 . DP=84;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,46,34;MQ=59;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr1 177905469 . C A 225 . DP=49;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,9,19,6;MQ=60;FQ=225;PV4=0.35,0.38,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 177913980 . T C 6.02 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr1 177915474 . A C 124 . DP=22;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,13,7;MQ=60;FQ=-87 GT:PL:GQ 1/1:157,60,0:99 chr1 177917479 . G A 97 . DP=39;VDB=0.0216;AF1=0.5;AC1=1;DP4=18,1,18,2;MQ=60;FQ=100;PV4=1,2.8e-14,1,0.012 GT:PL:GQ 0/1:127,0,208:99 chr1 177929554 . C T 92 . DP=36;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,14,4,10;MQ=60;FQ=95;PV4=1,4.9e-11,1,1 GT:PL:GQ 0/1:122,0,255:99 chr1 177929987 . T C 225 . DP=54;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,6,22,6;MQ=60;FQ=225;PV4=1,1,0.17,0.15 GT:PL:GQ 0/1:255,0,255:99 chr1 177930096 . T C 225 . DP=63;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,26,7,23;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 177930894 . C T 108 . DP=26;VDB=0.0241;AF1=0.5;AC1=1;DP4=5,11,2,5;MQ=60;FQ=111;PV4=1,0.15,1,1 GT:PL:GQ 0/1:138,0,255:99 chr1 177935275 . A G 11.3 . DP=3;VDB=0.0171;AF1=0.5004;AC1=1;DP4=0,1,0,2;MQ=60;FQ=3.43;PV4=1,0.11,1,1 GT:PL:GQ 0/1:41,0,28:31 chr1 178483231 . G A 222 . DP=70;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,39,27;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr1 178484834 . A G 60 . DP=4;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:92,9,0:16 chr1 178489978 . T G 165 . DP=28;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,21;MQ=60;FQ=-108 GT:PL:GQ 1/1:198,81,0:99 chr1 178492447 . T A 214 . DP=9;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,5,4;MQ=58;FQ=-54 GT:PL:GQ 1/1:247,27,0:51 chr1 178514622 . C T 165 . DP=103;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,45,52;MQ=60;FQ=-282 GT:PL:GQ 1/1:198,255,0:99 chr1 178646815 . C T 7.59 . DP=2;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr1 178746031 . C T 191 . DP=28;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,13,2,13;MQ=59;FQ=138;PV4=0.48,1,1,1 GT:PL:GQ 0/1:221,0,165:99 chr1 178780650 . A G 18.1 . DP=10;VDB=0.0333;AF1=0.5;AC1=1;DP4=1,5,0,4;MQ=60;FQ=21;PV4=1,8.9e-06,1,1 GT:PL:GQ 0/1:48,0,146:51 chr1 178854162 . C T 94 . DP=17;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,0,8,2;MQ=58;FQ=75;PV4=0.52,3.8e-06,1,0.03 GT:PL:GQ 0/1:124,0,102:99 chr1 178858711 . C A 22 . DP=13;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,0,3,2;MQ=60;FQ=25;PV4=0.15,2e-08,1,0.11 GT:PL:GQ 0/1:52,0,142:55 chr1 178858759 . G A 15.1 . DP=22;VDB=0.0164;AF1=0.5;AC1=1;DP4=7,6,7,1;MQ=60;FQ=18.1;PV4=0.17,6.6e-12,1,1 GT:PL:GQ 0/1:45,0,255:48 chr1 179040930 . T C 38 . DP=17;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,1,8,0;MQ=60;FQ=41;PV4=1,6.9e-09,1,0.37 GT:PL:GQ 0/1:68,0,179:71 chr1 179041011 . A G 121 . DP=51;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,6,18,12;MQ=60;FQ=124;PV4=0.55,2.6e-24,1,1 GT:PL:GQ 0/1:151,0,255:99 chr1 179051300 . T C 10.4 . DP=5;VDB=0.0225;AF1=0.5;AC1=1;DP4=2,0,2,1;MQ=60;FQ=12.9;PV4=1,0.0087,1,1 GT:PL:GQ 0/1:40,0,51:42 chr1 179052006 . G T 152 . DP=43;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,9,11,11;MQ=59;FQ=155;PV4=0.77,1.4e-12,1,1 GT:PL:GQ 0/1:182,0,255:99 chr1 179054692 . T G 92 . DP=47;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,10,14,10;MQ=58;FQ=95;PV4=1,1.2e-23,1,1 GT:PL:GQ 0/1:122,0,255:99 chr1 179067071 . C A 172 . DP=23;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,10,3,6;MQ=58;FQ=175;PV4=0.66,1,1,1 GT:PL:GQ 0/1:202,0,226:99 chr1 179087934 . T C 225 . DP=52;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,23,4,17;MQ=60;FQ=225;PV4=1,0.45,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 179089213 . C T 70 . DP=11;VDB=0.0004;AF1=0.5;AC1=1;DP4=6,0,5,0;MQ=60;FQ=72.9;PV4=1,0.34,1,1 GT:PL:GQ 0/1:100,0,118:99 chr1 179089475 . C G 100 . DP=18;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,11,1,5;MQ=60;FQ=103;PV4=1,1,1,0.44 GT:PL:GQ 0/1:130,0,195:99 chr1 179292442 . G A 222 . DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,3;MQ=58;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr1 179304892 . T C 81 . DP=8;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:114,24,0:45 chr1 179308803 . G A 11.3 . DP=12;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,7,0,5;MQ=60;FQ=14.2;PV4=1,1.2e-08,1,0.39 GT:PL:GQ 0/1:41,0,141:43 chr1 179310262 . C T 86 . DP=113;VDB=0.0380;AF1=0.5;AC1=1;DP4=33,26,29,23;MQ=59;FQ=89;PV4=1,8.3e-55,0.25,1 GT:PL:GQ 0/1:116,0,255:99 chr1 179310439 . C T 137 . DP=106;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,32,16,49;MQ=60;FQ=140;PV4=0.64,1.5e-39,1,1 GT:PL:GQ 0/1:167,0,255:99 chr1 179312102 . T C 225 . DP=111;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,39,17,32;MQ=60;FQ=225;PV4=1,0.048,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 179312235 . G A 20 . DP=18;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,9,0,8;MQ=60;FQ=23;PV4=1,8.1e-09,1,1 GT:PL:GQ 0/1:50,0,155:53 chr1 179312249 . att at 77.5 . INDEL;DP=12;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=60;FQ=77.9;PV4=1,0.0052,1,0.18 GT:PL:GQ 0/1:115,0,116:99 chr1 179312752 . C T 37 . DP=8;VDB=0.0329;AF1=0.5;AC1=1;DP4=1,3,1,3;MQ=60;FQ=40;PV4=1,2.6e-05,1,1 GT:PL:GQ 0/1:67,0,112:70 chr1 179317895 . Atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt Atgtgtgtgtgtgtgtgtgtgtgtgtgtgt,Atgtgtgtgtgtgtgtgtgtgtgtgtgt 9.71 . INDEL;DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=29;FQ=-40.5 GT:PL:GQ 1/1:68,26,20,47,0,44:8 chr1 179319541 . C G 225 . DP=125;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,46,17,41;MQ=60;FQ=225;PV4=1,0.47,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 179319580 . T C 222 . DP=98;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,20,75;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 179320578 . A G 167 . DP=188;VDB=0.0345;AF1=0.5;AC1=1;DP4=55,45,36,48;MQ=59;FQ=170;PV4=0.11,5.5e-47,1,1 GT:PL:GQ 0/1:197,0,255:99 chr1 179320665 . A G 150 . DP=93;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,35,8,37;MQ=59;FQ=153;PV4=0.45,1.3e-32,0.49,1 GT:PL:GQ 0/1:180,0,255:99 chr1 179339262 . C G 141 . DP=16;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,6,2,7;MQ=58;FQ=92;PV4=0.49,0.11,0.22,0.39 GT:PL:GQ 0/1:171,0,119:99 chr1 179347832 . T C 212 . DP=44;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,24,19;MQ=60;FQ=-156 GT:PL:GQ 1/1:245,129,0:99 chr1 179352736 . T C 124 . DP=74;VDB=0.0384;AF1=0.5;AC1=1;DP4=15,32,12,12;MQ=60;FQ=127;PV4=0.2,3.2e-24,1,0.18 GT:PL:GQ 0/1:154,0,255:99 chr1 179354304 . A G 147 . DP=11;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:180,33,0:63 chr1 179364372 . G C 22 . DP=26;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,10,0,11;MQ=60;FQ=25;PV4=0.22,4.3e-11,1,1 GT:PL:GQ 0/1:52,0,233:55 chr1 179364391 . A G 129 . DP=17;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,9,2,6;MQ=60;FQ=127;PV4=0.21,0.034,1,0.27 GT:PL:GQ 0/1:159,0,155:99 chr1 179380519 . G T 16.1 . DP=8;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=60;FQ=19.1;PV4=1,0.0011,1,1 GT:PL:GQ 0/1:46,0,72:49 chr1 179401503 . G A 171 . DP=92;VDB=0.0399;AF1=0.5;AC1=1;DP4=30,11,34,16;MQ=59;FQ=174;PV4=0.65,9.7e-23,1,0.22 GT:PL:GQ 0/1:201,0,255:99 chr1 179401564 . Ctttttttttttt Cttttttttttt,Ctttttttttt 30.5 . INDEL;DP=91;VDB=0.0380;AF1=1;AC1=2;DP4=0,2,30,45;MQ=59;FQ=-223;PV4=0.52,0.45,0.39,0.18 GT:PL:GQ 1/1:71,188,0,70,171,65:99 chr1 179437827 . G A 55 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:87,9,0:16 chr1 179452194 . C T 55.1 . DP=8;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:88,21,0:39 chr1 179452275 . G A 185 . DP=28;VDB=0.0325;AF1=0.5;AC1=1;DP4=12,2,9,3;MQ=60;FQ=188;PV4=0.63,0.37,1,0.24 GT:PL:GQ 0/1:215,0,224:99 chr1 179452522 . G C 144 . DP=7;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,1,6;MQ=53;FQ=-48 GT:PL:GQ 1/1:177,21,0:39 chr1 179462149 . A G 17.6 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:50,12,0:20 chr1 179494665 . C T 7.59 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr1 179497359 . T C 218 . DP=23;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,21,1;MQ=60;FQ=-93 GT:PL:GQ 1/1:251,66,0:99 chr1 179503806 . G A 31 . DP=10;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,1,6,0;MQ=58;FQ=34;PV4=0.4,5.7e-06,1,1 GT:PL:GQ 0/1:61,0,96:64 chr1 179504025 . aaagaagaagaagaa aaagaagaagaa 217 . INDEL;DP=53;VDB=0.0322;AF1=0.5;AC1=1;DP4=24,7,17,2;MQ=59;FQ=217;PV4=0.45,6e-06,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr1 179504043 . C G 225 . DP=64;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,9,17,7;MQ=59;FQ=225;PV4=0.77,0.29,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr1 179504130 . G A 100 . DP=58;VDB=0.0216;AF1=0.5;AC1=1;DP4=11,24,5,17;MQ=59;FQ=103;PV4=0.56,1.3e-26,0.37,0.39 GT:PL:GQ 0/1:130,0,255:99 chr1 179544898 . T C 124 . DP=16;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,8;MQ=58;FQ=-66 GT:PL:GQ 1/1:157,39,0:75 chr1 179561645 . A C 106 . DP=5;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:139,15,0:27 chr1 179561683 . A T 36.1 . DP=13;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-45 GT:PL:GQ 1/1:69,18,0:33 chr1 179604864 . C T 222 . DP=80;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,44,34;MQ=60;FQ=-262 GT:PL:GQ 1/1:255,235,0:99 chr1 179609589 . G T 179 . DP=108;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,48,55;MQ=59;FQ=-282 GT:PL:GQ 1/1:212,255,0:99 chr1 179816816 . T A 5.46 . DP=9;VDB=0.0301;AF1=0.4999;AC1=1;DP4=0,5,0,4;MQ=60;FQ=7.8;PV4=1,0.00049,1,0.41 GT:PL:GQ 0/1:34,0,111:34 chr1 179854026 . A T 9.31 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr1 179877780 . A C 136 . DP=51;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,13,14,9;MQ=60;FQ=139;PV4=0.57,4.2e-18,0.15,0.42 GT:PL:GQ 0/1:166,0,255:99 chr1 179883206 . A G 151 . DP=25;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,6,6,12;MQ=60;FQ=110;PV4=0.63,4e-11,1,0.24 GT:PL:GQ 0/1:181,0,137:99 chr1 179883242 . A G 154 . DP=14;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,3,1,9;MQ=60;FQ=71;PV4=0.51,0.23,1,0.25 GT:PL:GQ 0/1:184,0,98:99 chr1 179887125 . G A 222 . DP=141;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,65,71;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 179972337 . A C 169 . DP=105;VDB=0.0400;AF1=0.5;AC1=1;DP4=32,17,36,16;MQ=59;FQ=172;PV4=0.83,7.7e-31,1,0.26 GT:PL:GQ 0/1:199,0,255:99 chr1 179982938 . G T 6.98 . DP=26;VDB=0.0118;AF1=0.4999;AC1=1;DP4=16,4,6,0;MQ=60;FQ=9.53;PV4=0.54,9.8e-07,1,0.38 GT:PL:GQ 0/1:36,0,255:37 chr1 179983665 . G A 54 . DP=48;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,21,2,21;MQ=59;FQ=57;PV4=1,6.6e-26,1,1 GT:PL:GQ 0/1:84,0,244:87 chr1 179985156 . C T 142 . DP=34;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,18,0,16;MQ=59;FQ=144;PV4=1,1,0.15,0.39 GT:PL:GQ 0/1:172,0,178:99 chr1 179989742 . G C 225 . DP=64;VDB=0.0373;AF1=0.5;AC1=1;DP4=13,15,13,19;MQ=59;FQ=225;PV4=0.79,1,1,0.49 GT:PL:GQ 0/1:255,0,255:99 chr1 179992076 . A G 36.8 . DP=2;VDB=0.0178;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:68,6,0:10 chr1 179993793 . T C 36.5 . DP=4;VDB=0.0059;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:69,12,0:21 chr1 180000542 . G T 130 . DP=64;VDB=0.0400;AF1=0.5;AC1=1;DP4=18,16,10,19;MQ=60;FQ=133;PV4=0.2,6.1e-23,0.14,1 GT:PL:GQ 0/1:160,0,255:99 chr1 180003277 . C A 20 . DP=26;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,14,0,9;MQ=60;FQ=23;PV4=1,7.9e-17,1,0.18 GT:PL:GQ 0/1:50,0,214:53 chr1 180010702 . T C 39.8 . DP=2;VDB=0.0176;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:71,6,0:10 chr1 180022343 . T G 24 . DP=34;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,20,1,8;MQ=59;FQ=27;PV4=1,1.7e-11,1,1 GT:PL:GQ 0/1:54,0,255:57 chr1 180034431 . CTT C 218 . INDEL;DP=8;VDB=0.0345;AF1=0.5554;AC1=1;DP4=0,1,2,5;MQ=60;FQ=-27.5;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,7:10 chr1 180049840 . C T 129 . DP=16;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,6,0,9;MQ=60;FQ=87;PV4=1,1,1,1 GT:PL:GQ 0/1:159,0,114:99 chr1 180059736 . gacatacctac gac 21.5 . INDEL;DP=5;VDB=0.0001;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=44;FQ=24.5;PV4=1,1.1e-06,0,1 GT:PL:GQ 0/1:59,0,96:62 chr1 180059811 . A C 49 . DP=46;VDB=0.0271;AF1=0.5;AC1=1;DP4=28,4,11,3;MQ=56;FQ=52;PV4=0.66,3.7e-24,0.00015,1 GT:PL:GQ 0/1:79,0,255:82 chr1 180080115 . T G 16.1 . DP=15;VDB=0.0019;AF1=0.5;AC1=1;DP4=9,0,6,0;MQ=58;FQ=19.1;PV4=1,5.1e-09,1,0.016 GT:PL:GQ 0/1:46,0,155:49 chr1 180080290 . T A 169 . DP=80;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,21,17,27;MQ=59;FQ=172;PV4=1,1.4e-24,1,1 GT:PL:GQ 0/1:199,0,255:99 chr1 180144485 . G A 58 . DP=13;VDB=0.0398;AF1=0.5;AC1=1;DP4=1,4,2,5;MQ=58;FQ=60.2;PV4=1,0.012,1,1 GT:PL:GQ 0/1:88,0,95:90 chr1 180145088 . A G 222 . DP=32;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,12,18;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 180148012 . G C 122 . DP=39;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,10,7,15;MQ=60;FQ=125;PV4=0.74,8.3e-12,1,0.14 GT:PL:GQ 0/1:152,0,255:99 chr1 180155376 . C G 6.2 . DP=4;VDB=0.0196;AF1=0.4999;AC1=1;DP4=0,2,0,2;MQ=60;FQ=8.63;PV4=1,0.027,1,0.13 GT:PL:GQ 0/1:35,0,58:36 chr1 180158668 . C T 7.8 . DP=7;VDB=0.0156;AF1=0.5;AC1=1;DP4=4,0,3,0;MQ=60;FQ=10.4;PV4=1,1.8e-05,1,1 GT:PL:GQ 0/1:37,0,100:39 chr1 180158927 . C G 57 . DP=13;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,3,0,10;MQ=60;FQ=29;PV4=1,2.6e-06,1,1 GT:PL:GQ 0/1:87,0,56:59 chr1 180180669 . A G 176 . DP=31;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,15,6,5;MQ=60;FQ=179;PV4=0.13,1,1,1 GT:PL:GQ 0/1:206,0,255:99 chr1 180240752 . C T 33 . DP=4;VDB=0.0196;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=27.4;PV4=1,1,1,1 GT:PL:GQ 0/1:63,0,55:57 chr1 180241155 . G T 12.3 . DP=6;VDB=0.0183;AF1=0.5;AC1=1;DP4=1,2,0,3;MQ=60;FQ=15.1;PV4=1,0.0013,1,0.2 GT:PL:GQ 0/1:42,0,87:44 chr1 180243524 . A G 169 . DP=94;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,37,15,29;MQ=60;FQ=172;PV4=0.5,1.5e-24,0.14,1 GT:PL:GQ 0/1:199,0,255:99 chr1 180257692 . A C 101 . DP=8;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,5;MQ=60;FQ=-51 GT:PL:GQ 1/1:134,24,0:45 chr1 180651614 . G A 78 . DP=16;VDB=0.0099;AF1=0.5;AC1=1;DP4=2,7,0,7;MQ=57;FQ=81;PV4=0.47,0.02,0.43,0.33 GT:PL:GQ 0/1:108,0,194:99 chr1 180757056 . A G 56 . DP=9;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:89,27,0:51 chr1 180794474 . A G 60 . DP=68;VDB=0.0164;AF1=0.5;AC1=1;DP4=3,31,2,28;MQ=60;FQ=63;PV4=1,8.8e-32,1,0.074 GT:PL:GQ 0/1:90,0,255:93 chr1 180803922 . T C 101 . DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:134,15,0:27 chr1 180885430 . T C 215 . DP=81;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,50,28;MQ=60;FQ=-262 GT:PL:GQ 1/1:248,235,0:99 chr1 180886810 . C G 4.61 . DP=2;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:34,6,0:5 chr1 180897453 . A G 225 . DP=28;VDB=0.0140;AF1=0.5;AC1=1;DP4=9,1,15,3;MQ=59;FQ=132;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,159:99 chr1 180897521 . C T 176 . DP=58;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,32,23;MQ=60;FQ=-193 GT:PL:GQ 1/1:209,166,0:99 chr1 180897569 . C T 187 . DP=55;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,11,13,22;MQ=60;FQ=190;PV4=1,1.1e-13,1,0.31 GT:PL:GQ 0/1:217,0,235:99 chr1 180905352 . C T 189 . DP=165;VDB=0.0399;AF1=0.5;AC1=1;DP4=46,43,47,27;MQ=60;FQ=192;PV4=0.15,3.6e-22,1,0.43 GT:PL:GQ 0/1:219,0,255:99 chr1 180905448 . G T 120 . DP=159;VDB=0.0399;AF1=0.5;AC1=1;DP4=40,42,32,37;MQ=60;FQ=123;PV4=0.87,1.3e-51,1,0.18 GT:PL:GQ 0/1:150,0,255:99 chr1 180913597 . A G 164 . DP=88;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,37,35;MQ=59;FQ=-244 GT:PL:GQ 1/1:197,217,0:99 chr1 180953853 . A G 225 . DP=52;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,14,10,16;MQ=59;FQ=225;PV4=1,0.45,1,0.45 GT:PL:GQ 0/1:255,0,255:99 chr1 180991665 . C G 94 . DP=54;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,6,23,6;MQ=60;FQ=97;PV4=0.74,3.3e-19,1,1 GT:PL:GQ 0/1:124,0,255:99 chr1 181018236 . A G 189 . DP=48;VDB=0.0393;AF1=0.5;AC1=1;DP4=13,18,4,12;MQ=54;FQ=192;PV4=0.34,1,1,1 GT:PL:GQ 0/1:219,0,255:99 chr1 181024404 . G A 225 . DP=105;VDB=0.0398;AF1=0.5;AC1=1;DP4=28,27,22,24;MQ=60;FQ=225;PV4=0.84,1,1,0.35 GT:PL:GQ 0/1:255,0,255:99 chr1 181058643 . A G 80.3 . DP=7;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:113,15,0:27 chr1 181680082 . G A 225 . DP=64;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,9,21,18;MQ=59;FQ=225;PV4=0.61,1,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr1 181684605 . A G 82 . DP=8;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,6;MQ=60;FQ=-51 GT:PL:GQ 1/1:115,24,0:45 chr1 181686216 . T C 146 . DP=44;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,31,7;MQ=60;FQ=-141 GT:PL:GQ 1/1:179,114,0:99 chr1 181719679 . C T 218 . DP=60;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,19,7,15;MQ=60;FQ=220;PV4=0.41,0.095,1,1 GT:PL:GQ 0/1:248,0,255:99 chr1 181725110 . T C 225 . DP=37;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,10,8,8;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 181727030 . A T 115 . DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,8,15,5;MQ=60;FQ=118;PV4=1,1.8e-15,1,0.15 GT:PL:GQ 0/1:145,0,255:99 chr1 181731667 . TC TCC 189 . INDEL;DP=58;VDB=0.0271;AF1=0.5;AC1=1;DP4=25,4,25,2;MQ=60;FQ=191;PV4=0.67,1,0.15,0.046 GT:PL:GQ 0/1:227,0,230:99 chr1 181732695 . A G 37 . DP=17;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,5,3,4;MQ=59;FQ=40;PV4=1,6.1e-07,1,1 GT:PL:GQ 0/1:67,0,198:70 chr1 181741301 . C T 225 . DP=142;VDB=0.0380;AF1=0.5;AC1=1;DP4=40,33,41,27;MQ=60;FQ=225;PV4=0.61,0.24,1,0.32 GT:PL:GQ 0/1:255,0,255:99 chr1 181745580 . G A 24 . DP=11;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,4,1,4;MQ=60;FQ=27;PV4=1,3e-06,1,0.29 GT:PL:GQ 0/1:54,0,151:57 chr1 182026813 . G C 222 . DP=111;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,56,53;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 182027022 . C T 144 . DP=74;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,25,46;MQ=60;FQ=-241 GT:PL:GQ 1/1:177,214,0:99 chr1 182355046 . A G 225 . DP=65;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,14,17,23;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 182356399 . A G 135 . DP=69;VDB=0.0365;AF1=0.5;AC1=1;DP4=25,18,15,11;MQ=60;FQ=138;PV4=1,2e-20,0.1,0.45 GT:PL:GQ 0/1:165,0,255:99 chr1 182369078 . G A 204 . DP=53;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,33,19;MQ=60;FQ=-184 GT:PL:GQ 1/1:237,157,0:99 chr1 182369233 . A G 139 . DP=120;VDB=0.0392;AF1=0.5;AC1=1;DP4=31,33,22,31;MQ=60;FQ=142;PV4=0.46,4.2e-44,0.45,1 GT:PL:GQ 0/1:169,0,255:99 chr1 182429295 . ctgtgtgtgtgtgtgtgtgtgtgtgt ctgtgtgtgtgtgtgtgtgtgtgt,ctgtgtgtgtgtgtgtgtgtgt 122 . INDEL;DP=14;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:201,57,39,152,0,149:33 chr1 182429728 . T C 86 . DP=18;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,14,3;MQ=60;FQ=-78 GT:PL:GQ 1/1:119,51,0:99 chr1 182491107 . A C 192 . DP=12;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:225,36,0:69 chr1 182496829 . A G 222 . DP=99;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,21,72;MQ=60;FQ=-281;PV4=1,1,0.44,1 GT:PL:GQ 1/1:255,254,0:99 chr1 182501933 . C A 222 . DP=132;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,67,59;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 182502033 . G T 222 . DP=70;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,16,54;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr1 182509269 . G A 130 . DP=16;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,13,2;MQ=58;FQ=-72 GT:PL:GQ 1/1:163,45,0:87 chr1 182509292 . A G 157 . DP=28;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,22,4;MQ=59;FQ=-105 GT:PL:GQ 1/1:190,78,0:99 chr1 182509617 . C A 34.3 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:67,15,0:27 chr1 182549019 . A G 222 . DP=53;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,44,6;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 182551337 . A C 222 . DP=84;VDB=0.0345;AF1=1;AC1=2;DP4=0,1,46,37;MQ=59;FQ=-251;PV4=0.45,1,1,0.26 GT:PL:GQ 1/1:255,224,0:99 chr1 182554557 . C T 187 . DP=112;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,58,49;MQ=60;FQ=-282 GT:PL:GQ 1/1:220,255,0:99 chr1 182569626 . T C 222 . DP=48;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,10,32;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr1 182573227 . T C 196 . DP=78;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,55,23;MQ=60;FQ=-262 GT:PL:GQ 1/1:229,235,0:99 chr1 182778367 . G A 204 . DP=44;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,33;MQ=59;FQ=-156 GT:PL:GQ 1/1:237,129,0:99 chr1 182784022 . T C 127 . DP=54;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,21,5,21;MQ=59;FQ=130;PV4=1,6e-17,1,1 GT:PL:GQ 0/1:157,0,255:99 chr1 182812436 . T G 4.13 . DP=7;VDB=0.0159;AF1=0.4998;AC1=1;DP4=3,0,2,0;MQ=60;FQ=6.2;PV4=1,0.0026,1,1 GT:PL:GQ 0/1:32,0,70:31 chr1 182850727 . T C 155 . DP=34;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,11,22;MQ=59;FQ=-126 GT:PL:GQ 1/1:188,99,0:99 chr1 182854017 . G A 41 . DP=19;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,8,0,10;MQ=59;FQ=44;PV4=1,1.9e-09,0.19,1 GT:PL:GQ 0/1:71,0,143:74 chr1 182993025 . C T 94 . DP=64;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,5,28,7;MQ=60;FQ=97;PV4=1,6.6e-23,1,0.34 GT:PL:GQ 0/1:124,0,255:99 chr1 183072590 . T C 225 . DP=61;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,22,13,15;MQ=60;FQ=225;PV4=0.19,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 183077296 . A AG 102 . INDEL;DP=23;VDB=0.0004;AF1=0.5;AC1=1;DP4=8,0,15,0;MQ=60;FQ=67.5;PV4=1,1,1,0.2 GT:PL:GQ 0/1:140,0,102:99 chr1 183077615 . C T 49 . DP=10;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,6,0,4;MQ=58;FQ=52;PV4=1,0.22,1,0.28 GT:PL:GQ 0/1:79,0,123:82 chr1 183077618 . C T 10.4 . DP=9;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,5,0,3;MQ=57;FQ=13.2;PV4=1,0.0013,1,0.27 GT:PL:GQ 0/1:40,0,113:42 chr1 183079509 . C T 20 . DP=16;VDB=0.0053;AF1=0.5;AC1=1;DP4=4,0,10,0;MQ=60;FQ=23;PV4=1,6.3e-10,1,0.45 GT:PL:GQ 0/1:50,0,85:53 chr1 183085696 . A G 225 . DP=54;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,3,24,4;MQ=60;FQ=223;PV4=1,1,1,0.5 GT:PL:GQ 0/1:255,0,251:99 chr1 183085755 . A G 225 . DP=91;VDB=0.0322;AF1=0.5;AC1=1;DP4=21,19,23,26;MQ=60;FQ=225;PV4=0.67,0.1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 183086757 . A C 107 . DP=37;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,10,2,18;MQ=59;FQ=110;PV4=0.1,1.3e-12,0.19,0.47 GT:PL:GQ 0/1:137,0,255:99 chr1 183093875 . T C 215 . DP=36;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,13,7,6;MQ=60;FQ=218;PV4=0.48,1,1,1 GT:PL:GQ 0/1:245,0,255:99 chr1 183094547 . T C 128 . DP=64;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,10,22,6;MQ=59;FQ=131;PV4=0.57,1.6e-25,0.45,0.39 GT:PL:GQ 0/1:158,0,255:99 chr1 183095185 . TAAAAAAAAAAAAAA TAAAAAAAAAAAA,TAAAAAAAAAAA 8.35 . INDEL;DP=44;VDB=0.0380;AF1=1;AC1=2;DP4=7,0,23,3;MQ=57;FQ=-50.5;PV4=1,1,0.14,0.36 GT:PL:GQ 1/1:48,16,0,32,5,24:20 chr1 183095234 . A G 136 . DP=76;VDB=0.0190;AF1=0.5;AC1=1;DP4=15,7,32,20;MQ=58;FQ=139;PV4=0.79,1.3e-20,0.068,1 GT:PL:GQ 0/1:166,0,242:99 chr1 183095477 . G A 106 . DP=20;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,8,2,10;MQ=60;FQ=93.9;PV4=0.49,0.00058,1,0.056 GT:PL:GQ 0/1:136,0,121:99 chr1 183097956 . GTTA GTTATTA 167 . INDEL;DP=14;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,5,1,6;MQ=55;FQ=170;PV4=1,1,0.028,0.28 GT:PL:GQ 0/1:205,0,255:99 chr1 183099701 . G A 96 . DP=15;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,7,0,7;MQ=58;FQ=99;PV4=1,0.39,1,1 GT:PL:GQ 0/1:126,0,167:99 chr1 183100555 . T C 56 . DP=46;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,24,0,20;MQ=59;FQ=59;PV4=1,6.6e-20,1,0.12 GT:PL:GQ 0/1:86,0,182:89 chr1 183100563 . Ggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt GGTgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 81.5 . INDEL;DP=32;VDB=0.0033;AF1=0.5006;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-9.1;PV4=1,1,1,1 GT:PL:GQ 0/1:119,0,26:29 chr1 183101451 . T G 10.4 . DP=5;VDB=0.0070;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=55;FQ=12.8;PV4=1,0.00027,0.25,1 GT:PL:GQ 0/1:40,0,50:42 chr1 183101471 . G A 35 . DP=13;VDB=0.0025;AF1=0.5;AC1=1;DP4=6,0,7,0;MQ=58;FQ=38;PV4=1,3e-07,0.19,1 GT:PL:GQ 0/1:65,0,123:68 chr1 183101686 . G A 87 . DP=83;VDB=0.0298;AF1=0.5;AC1=1;DP4=14,27,10,31;MQ=59;FQ=90;PV4=0.47,1.2e-43,1,1 GT:PL:GQ 0/1:117,0,255:99 chr1 183104013 . G A 85 . DP=48;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,21,2,19;MQ=60;FQ=88;PV4=0.44,2.4e-12,1,0.43 GT:PL:GQ 0/1:115,0,255:99 chr1 183105534 . T C 181 . DP=71;VDB=0.0399;AF1=0.5;AC1=1;DP4=28,9,29,2;MQ=60;FQ=184;PV4=0.055,0.087,1,1 GT:PL:GQ 0/1:211,0,255:99 chr1 183105705 . G A 116 . DP=62;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,25,3,32;MQ=60;FQ=119;PV4=0.63,3.8e-26,0.2,0.16 GT:PL:GQ 0/1:146,0,209:99 chr1 183155482 . C A 30.1 . DP=8;VDB=0.0271;AF1=0.505;AC1=1;DP4=1,0,5,0;MQ=60;FQ=-10.4;PV4=1,0.0047,1,0.35 GT:PL:GQ 0/1:60,0,17:20 chr1 183155700 . C A 100 . DP=24;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,6,3,11;MQ=59;FQ=103;PV4=1,1.3e-08,0.23,0.46 GT:PL:GQ 0/1:130,0,162:99 chr1 183155715 . CT C 130 . INDEL;DP=16;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,5,1,8;MQ=58;FQ=103;PV4=1,0.048,0.22,0.48 GT:PL:GQ 0/1:168,0,138:99 chr1 183177218 . A G 44 . DP=16;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,8,1,6;MQ=58;FQ=47;PV4=0.47,1.3e-07,1,1 GT:PL:GQ 0/1:74,0,138:77 chr1 183255908 . T C 225 . DP=34;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,9,6,11;MQ=59;FQ=225;PV4=0.73,1,0.083,1 GT:PL:GQ 0/1:255,0,255:99 chr1 183273751 . C T 65 . DP=9;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:98,27,0:51 chr1 183617266 . C G 137 . DP=114;VDB=0.0400;AF1=0.5;AC1=1;DP4=29,24,29,28;MQ=59;FQ=140;PV4=0.71,1.2e-39,1,1 GT:PL:GQ 0/1:167,0,255:99 chr1 183711483 . C T 80 . DP=12;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:113,36,0:69 chr1 183849739 . G C 29 . DP=5;VDB=0.0099;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=32;PV4=1,1,1,1 GT:PL:GQ 0/1:59,0,79:62 chr1 183867085 . C T 113 . DP=17;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,5,0,9;MQ=60;FQ=84;PV4=0.4,1,1,1 GT:PL:GQ 0/1:143,0,111:99 chr1 183869404 . C T 174 . DP=39;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,12,1,26;MQ=59;FQ=108;PV4=1,0.43,1,0.49 GT:PL:GQ 0/1:204,0,135:99 chr1 183871637 . G A 93 . DP=20;VDB=0.0373;AF1=0.5;AC1=1;DP4=7,3,6,3;MQ=60;FQ=96;PV4=1,0.0006,1,1 GT:PL:GQ 0/1:123,0,197:99 chr1 183895178 . G A 165 . DP=50;VDB=0.0345;AF1=0.5;AC1=1;DP4=22,5,20,1;MQ=60;FQ=168;PV4=0.21,1,0.13,0.41 GT:PL:GQ 0/1:195,0,255:99 chr1 183942950 . C T 100 . DP=20;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,2,16;MQ=60;FQ=-81 GT:PL:GQ 1/1:133,54,0:99 chr1 183944444 . C T 11.3 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:43,9,0:13 chr1 184020945 . G A 76 . DP=21;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,2,9,1;MQ=60;FQ=79;PV4=0.56,3.5e-05,1,1 GT:PL:GQ 0/1:106,0,158:99 chr1 184023529 . A C 152 . DP=101;VDB=0.0271;AF1=0.5;AC1=1;DP4=39,8,42,10;MQ=60;FQ=155;PV4=0.8,2.2e-21,1,1 GT:PL:GQ 0/1:182,0,255:99 chr1 184042058 . T C 82 . DP=22;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,10,3,9;MQ=59;FQ=85;PV4=0.22,3.6e-11,0.19,1 GT:PL:GQ 0/1:112,0,148:99 chr1 184476621 . T C 37.8 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:69,6,0:10 chr1 184662181 . C T 79 . DP=43;VDB=0.0271;AF1=0.5;AC1=1;DP4=16,6,16,5;MQ=59;FQ=82;PV4=1,5.3e-22,0.49,1 GT:PL:GQ 0/1:109,0,255:99 chr1 184663537 . A C 90 . DP=52;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,19,5,20;MQ=60;FQ=93;PV4=0.74,7.8e-24,0.16,1 GT:PL:GQ 0/1:120,0,255:99 chr1 184663581 . T C 99 . DP=32;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,13,2,16;MQ=60;FQ=102;PV4=1,6.1e-16,1,0.43 GT:PL:GQ 0/1:129,0,194:99 chr1 184675814 . G A 225 . DP=158;VDB=0.0399;AF1=0.5;AC1=1;DP4=44,29,48,33;MQ=60;FQ=225;PV4=1,8.3e-05,0.049,1 GT:PL:GQ 0/1:255,0,255:99 chr1 184677464 . G A 155 . DP=87;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,29,12,28;MQ=60;FQ=158;PV4=0.5,4.1e-24,1,1 GT:PL:GQ 0/1:185,0,255:99 chr1 184695571 . C T 19.1 . DP=18;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,7,0,9;MQ=60;FQ=22;PV4=1,8.5e-09,1,1 GT:PL:GQ 0/1:49,0,132:52 chr1 184706212 . GTT GT 192 . INDEL;DP=29;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,10,4,11;MQ=60;FQ=195;PV4=1,0.15,1,0.4 GT:PL:GQ 0/1:230,0,244:99 chr1 184760001 . T C 33 . DP=22;VDB=0.0025;AF1=0.5;AC1=1;DP4=12,0,10,0;MQ=59;FQ=36;PV4=1,2.4e-12,1,1 GT:PL:GQ 0/1:63,0,161:66 chr1 184764067 . C G 77 . DP=101;VDB=0.0271;AF1=0.5;AC1=1;DP4=43,20,29,7;MQ=60;FQ=80;PV4=0.24,1.9e-43,0.094,1 GT:PL:GQ 0/1:107,0,255:99 chr1 184777079 . G A 86 . DP=14;VDB=0.0011;AF1=0.5;AC1=1;DP4=8,0,6,0;MQ=60;FQ=89;PV4=1,0.44,1,1 GT:PL:GQ 0/1:116,0,141:99 chr1 184777101 . G A 151 . DP=40;VDB=0.0066;AF1=0.5;AC1=1;DP4=22,1,15,1;MQ=59;FQ=154;PV4=1,0.36,1,0.23 GT:PL:GQ 0/1:181,0,211:99 chr1 184777177 . C A 142 . DP=146;VDB=0.0365;AF1=0.5;AC1=1;DP4=60,25,48,12;MQ=60;FQ=145;PV4=0.25,4.7e-25,1,1 GT:PL:GQ 0/1:172,0,255:99 chr1 184777467 . A T 13.2 . DP=5;VDB=0.0080;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=15.8;PV4=1,0.01,1,1 GT:PL:GQ 0/1:43,0,54:45 chr1 184868251 . G A 112 . DP=38;VDB=0.0190;AF1=0.5;AC1=1;DP4=17,0,18,3;MQ=59;FQ=115;PV4=0.24,5.1e-16,0.19,0.22 GT:PL:GQ 0/1:142,0,173:99 chr1 185119794 . C T 40.8 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:72,6,0:10 chr1 185833565 . A C 27 . DP=4;VDB=0.0161;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=28.3;PV4=1,0.25,1,1 GT:PL:GQ 0/1:57,0,60:58 chr1 185833880 . A G 74 . DP=13;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,7,0,5;MQ=58;FQ=77;PV4=1,0.48,1,1 GT:PL:GQ 0/1:104,0,131:99 chr1 185834847 . GTTTCTTT GTTT 73.5 . INDEL;DP=7;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,0,3,0;MQ=57;FQ=76.5;PV4=1,1,0.14,1 GT:PL:GQ 0/1:111,0,145:99 chr1 185984517 . T C 225 . DP=97;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,31,19,25;MQ=60;FQ=225;PV4=0.83,0.01,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr1 186022032 . T G 6.98 . DP=17;VDB=0.0011;AF1=0.4999;AC1=1;DP4=12,0,5,0;MQ=60;FQ=9.53;PV4=1,2.5e-07,1,1 GT:PL:GQ 0/1:36,0,171:37 chr1 186026474 . T C 225 . DP=105;VDB=0.0380;AF1=0.5;AC1=1;DP4=23,26,22,32;MQ=60;FQ=225;PV4=0.56,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 186030902 . G T 45 . DP=11;VDB=0.0053;AF1=0.5;AC1=1;DP4=6,0,3,0;MQ=60;FQ=48;PV4=1,1,1,0.037 GT:PL:GQ 0/1:75,0,134:78 chr1 186031041 . C T 225 . DP=53;VDB=0.0393;AF1=0.5;AC1=1;DP4=17,12,9,13;MQ=60;FQ=225;PV4=0.26,0.16,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 186050417 . A G 107 . DP=49;VDB=0.0393;AF1=0.5;AC1=1;DP4=14,14,12,8;MQ=60;FQ=110;PV4=0.57,6.3e-23,0.12,0.42 GT:PL:GQ 0/1:137,0,255:99 chr1 186055371 . A G 225 . DP=39;VDB=0.0216;AF1=0.5;AC1=1;DP4=11,3,20,5;MQ=60;FQ=179;PV4=1,1,1,0.046 GT:PL:GQ 0/1:255,0,206:99 chr1 186057181 . T C 95 . DP=125;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,41,16,43;MQ=60;FQ=98;PV4=0.34,8.7e-52,0.48,1 GT:PL:GQ 0/1:125,0,255:99 chr1 186081918 . C T 92 . DP=39;VDB=0.0271;AF1=0.5;AC1=1;DP4=15,9,12,0;MQ=59;FQ=95;PV4=0.016,0.057,0.31,1 GT:PL:GQ 0/1:122,0,255:99 chr1 186086578 . G A 225 . DP=57;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,8,20,9;MQ=60;FQ=225;PV4=1,0.067,1,0.002 GT:PL:GQ 0/1:255,0,255:99 chr1 186089072 . G A 115 . DP=71;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,24,9,23;MQ=60;FQ=118;PV4=0.79,1.3e-29,1,0.15 GT:PL:GQ 0/1:145,0,255:99 chr1 186089363 . C A 84 . DP=10;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,5,0,5;MQ=60;FQ=81.6;PV4=1,1,1,1 GT:PL:GQ 0/1:114,0,110:99 chr1 186092076 . A C 47 . DP=6;VDB=0.0177;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=48.8;PV4=1,0.19,1,0.13 GT:PL:GQ 0/1:77,0,82:79 chr1 186106861 . C T 135 . DP=111;VDB=0.0322;AF1=0.5;AC1=1;DP4=24,40,18,27;MQ=60;FQ=138;PV4=0.84,3.8e-36,1,1 GT:PL:GQ 0/1:165,0,255:99 chr1 186113931 . T G 19.1 . DP=19;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,13,0,6;MQ=60;FQ=22;PV4=1,2.7e-10,1,0.36 GT:PL:GQ 0/1:49,0,179:52 chr1 186141301 . G A 225 . DP=118;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,37,16,46;MQ=60;FQ=225;PV4=0.68,0.17,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 186157274 . A G 117 . DP=62;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,25,4,30;MQ=60;FQ=120;PV4=0.68,4.2e-25,1,1 GT:PL:GQ 0/1:147,0,234:99 chr1 186265948 . T A 194 . DP=43;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,41,0;MQ=60;FQ=-150 GT:PL:GQ 1/1:227,123,0:99 chr1 186277088 . G C 222 . DP=74;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,48;MQ=56;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr1 186304298 . C T 76 . DP=51;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,22,6,12;MQ=60;FQ=79;PV4=1,1.5e-16,1,1 GT:PL:GQ 0/1:106,0,255:99 chr1 186313249 . A G 199 . DP=58;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,5,53;MQ=59;FQ=-202 GT:PL:GQ 1/1:232,175,0:99 chr1 186315474 . C A 12.3 . DP=12;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,4,0,5;MQ=60;FQ=15.1;PV4=1,2.7e-09,1,1 GT:PL:GQ 0/1:42,0,102:44 chr1 186319282 . C T 5.46 . DP=3;VDB=0.0174;AF1=0.5003;AC1=1;DP4=1,0,2,0;MQ=60;FQ=3.03;PV4=1,0.077,1,1 GT:PL:GQ 0/1:34,0,28:31 chr1 186326757 . TAAAAA TAAAA 41.5 . INDEL;DP=34;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,12,1,13;MQ=59;FQ=23.5;PV4=1,0.00013,1,1 GT:PL:GQ 0/1:79,0,58:61 chr1 186329869 . C G 225 . DP=42;VDB=0.0322;AF1=0.5;AC1=1;DP4=20,3,14,5;MQ=59;FQ=225;PV4=0.43,0.096,0.45,1 GT:PL:GQ 0/1:255,0,255:99 chr1 186330643 . T C 3.01 . DP=5;VDB=0.0192;AF1=0.4997;AC1=1;DP4=3,0,2,0;MQ=60;FQ=4.77;PV4=1,0.00084,1,0.48 GT:PL:GQ 0/1:30,0,78:28 chr1 186357523 . T C 20 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:52,9,0:15 chr1 186360814 . G A 184 . DP=12;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,2,5,4;MQ=60;FQ=47;PV4=1,0.26,1,1 GT:PL:GQ 0/1:214,0,74:77 chr1 186367619 . C T 67 . DP=19;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,11,0,6;MQ=60;FQ=70;PV4=1,0.031,1,0.22 GT:PL:GQ 0/1:97,0,199:99 chr1 186649221 . A G 19 . DP=3;VDB=0.0225;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:51,9,0:15 chr1 186839861 . G A 77 . DP=58;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,18,6,16;MQ=60;FQ=80;PV4=0.17,4.5e-17,1,0.14 GT:PL:GQ 0/1:107,0,255:99 chr1 186919732 . A T 18.3 . DP=10;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:51,15,0:25 chr1 186919993 . G A 222 . DP=41;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,3,36;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 186925194 . T C 147 . DP=11;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:180,30,0:57 chr1 186925552 . T C 139 . DP=59;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,4,54;MQ=60;FQ=-202 GT:PL:GQ 1/1:172,175,0:99 chr1 186946912 . G A 126 . DP=80;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,11,66;MQ=60;FQ=-259 GT:PL:GQ 1/1:159,232,0:99 chr1 187610852 . A T 181 . DP=65;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,11,13,24;MQ=60;FQ=184;PV4=0.19,4.4e-19,1,1 GT:PL:GQ 0/1:211,0,255:99 chr1 192128183 . G A 174 . DP=18;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,17,0;MQ=60;FQ=-78 GT:PL:GQ 1/1:207,51,0:99 chr1 192544795 . A G 16.2 . DP=16;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:49,18,0:29 chr1 192545099 . G A 91 . DP=23;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,22;MQ=60;FQ=-96 GT:PL:GQ 1/1:124,69,0:99 chr1 192780088 . GCTCTCT GCTCT 217 . INDEL;DP=99;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,18,36,22;MQ=60;FQ=217;PV4=0.53,0.00012,1,0.22 GT:PL:GQ 0/1:255,0,255:99 chr1 193051685 . G A 42 . DP=25;VDB=0.0099;AF1=0.5;AC1=1;DP4=8,2,14,0;MQ=59;FQ=45;PV4=0.16,2.3e-15,0.21,1 GT:PL:GQ 0/1:72,0,192:75 chr1 193054154 . G A 213 . DP=21;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,3,8,4;MQ=60;FQ=165;PV4=1,0.12,1,0.21 GT:PL:GQ 0/1:243,0,192:99 chr1 193090865 . C A 185 . DP=56;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,6,23,13;MQ=60;FQ=188;PV4=1,1.3e-11,0.24,0.37 GT:PL:GQ 0/1:215,0,237:99 chr1 193094375 . T C 71 . DP=31;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,12,0,19;MQ=60;FQ=74;PV4=1,1.8e-10,1,1 GT:PL:GQ 0/1:101,0,148:99 chr1 193205272 . T A 26 . DP=31;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,5,9,1;MQ=60;FQ=29;PV4=0.63,1.9e-13,1,1 GT:PL:GQ 0/1:56,0,255:59 chr1 196227526 . A G 222 . DP=36;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,12,24;MQ=59;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 196242764 . T G 83 . DP=9;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:116,27,0:51 chr1 196251522 . T C 90 . DP=8;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,2,0,6;MQ=60;FQ=25;PV4=1,0.18,1,0.11 GT:PL:GQ 0/1:120,0,52:55 chr1 196254970 . C T 222 . DP=25;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,23;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 196398619 . T C 48 . DP=4;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:80,9,0:16 chr1 196398974 . T A 17.1 . DP=4;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:49,9,0:15 chr1 196461513 . C T 51.5 . DP=4;VDB=0.0199;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:84,12,0:21 chr1 196654324 . A C 68 . DP=148;VDB=0.0345;AF1=0.5;AC1=1;DP4=34,54,23,33;MQ=60;FQ=71;PV4=0.86,9e-65,1,1 GT:PL:GQ 0/1:98,0,255:99 chr1 196659237 . C T 104 . DP=62;VDB=0.0298;AF1=0.5;AC1=1;DP4=25,12,20,5;MQ=60;FQ=107;PV4=0.39,1.5e-21,1,0.0067 GT:PL:GQ 0/1:134,0,255:99 chr1 196682947 . G A 46 . DP=114;VDB=0.0365;AF1=0.5;AC1=1;DP4=51,18,35,7;MQ=60;FQ=49;PV4=0.35,5.1e-56,1,1 GT:PL:GQ 0/1:76,0,255:79 chr1 196684625 . G T 107 . DP=13;VDB=0.0025;AF1=0.5;AC1=1;DP4=4,0,8,0;MQ=60;FQ=61;PV4=1,0.18,1,0.023 GT:PL:GQ 0/1:137,0,88:91 chr1 196874356 . G T 195 . DP=109;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,77,29;MQ=60;FQ=-282 GT:PL:GQ 1/1:228,255,0:99 chr1 196920178 . C T 47 . DP=45;VDB=0.0140;AF1=0.5;AC1=1;DP4=7,19,1,16;MQ=60;FQ=50;PV4=0.12,4.8e-14,1,1 GT:PL:GQ 0/1:77,0,255:80 chr1 196926956 . C T 65 . DP=25;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,4,5,1;MQ=60;FQ=68;PV4=1,0.03,1,0.34 GT:PL:GQ 0/1:95,0,255:98 chr1 196926973 . C A 69 . DP=36;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,4,10,3;MQ=59;FQ=72;PV4=1,1.7e-19,0.12,0.0089 GT:PL:GQ 0/1:99,0,255:99 chr1 196951912 . T C 47 . DP=6;VDB=0.0118;AF1=0.5032;AC1=1;DP4=1,0,4,1;MQ=60;FQ=-8.63;PV4=1,0.0018,1,1 GT:PL:GQ 0/1:77,0,19:22 chr1 197008597 . A C 11.3 . DP=17;VDB=0.0008;AF1=0.5;AC1=1;DP4=2,10,0,5;MQ=60;FQ=14.2;PV4=1,8e-08,1,1 GT:PL:GQ 0/1:41,0,225:43 chr1 197009798 . A G 225 . DP=43;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,15,8,15;MQ=59;FQ=225;PV4=0.53,0.033,0.18,0.21 GT:PL:GQ 0/1:255,0,255:99 chr1 197030201 . T C 220 . DP=49;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,1,46;MQ=60;FQ=-168 GT:PL:GQ 1/1:253,141,0:99 chr1 197031021 . C T 222 . DP=66;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,17,49;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr1 197053373 . G A 78 . DP=12;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:111,36,0:69 chr1 197055925 . T C 181 . DP=20;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,13,7;MQ=60;FQ=-87 GT:PL:GQ 1/1:214,60,0:99 chr1 197059878 . G A 47 . DP=3;VDB=0.0050;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:79,9,0:16 chr1 197059892 . A G 32.5 . DP=12;VDB=0.0004;AF1=0.5718;AC1=1;DP4=1,0,9,0;MQ=60;FQ=-21;PV4=1,2.2e-05,1,0.42 GT:PL:GQ 0/1:62,0,6:9 chr1 197059928 . A G 67 . DP=33;VDB=0.0081;AF1=1;AC1=2;DP4=1,0,29,0;MQ=60;FQ=-83;PV4=1,4.8e-06,1,0.24 GT:PL:GQ 1/1:100,56,0:99 chr1 197070442 . G T 110 . DP=15;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,0,5,6;MQ=60;FQ=60;PV4=0.1,1.3e-09,1,0.065 GT:PL:GQ 0/1:140,0,87:90 chr1 197070697 . T C 85 . DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,9,20,11;MQ=60;FQ=88;PV4=0.79,7e-38,1,0.17 GT:PL:GQ 0/1:115,0,255:99 chr1 197070707 . G A 153 . DP=62;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,8,21,9;MQ=60;FQ=156;PV4=1,1.4e-26,1,0.055 GT:PL:GQ 0/1:183,0,255:99 chr1 197070815 . T C 222 . DP=102;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,55,43;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 197070901 . A G 222 . DP=110;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,53,52;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 197072420 . T C 89 . DP=70;VDB=0.0345;AF1=0.5;AC1=1;DP4=28,5,26,8;MQ=59;FQ=92;PV4=0.54,3.5e-36,0.29,1 GT:PL:GQ 0/1:119,0,255:99 chr1 197073196 . G A 225 . DP=123;VDB=0.0398;AF1=0.5;AC1=1;DP4=39,37,19,24;MQ=60;FQ=225;PV4=0.57,0.41,1,0.072 GT:PL:GQ 0/1:255,0,255:99 chr1 197073932 . T C 107 . DP=37;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,7,8,14;MQ=60;FQ=110;PV4=0.5,6.9e-16,1,0.32 GT:PL:GQ 0/1:137,0,255:99 chr1 197091537 . A T 222 . DP=70;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,50,17;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr1 197091808 . T C 141 . DP=25;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,11,0,12;MQ=60;FQ=135;PV4=1,1,1,0.34 GT:PL:GQ 0/1:171,0,163:99 chr1 197094030 . C T 51 . DP=11;VDB=0.0384;AF1=0.5;AC1=1;DP4=3,0,7,0;MQ=60;FQ=44.5;PV4=1,1.6e-06,1,1 GT:PL:GQ 0/1:81,0,72:74 chr1 197109042 . C T 39.8 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:71,6,0:10 chr1 197112533 . G A 222 . DP=101;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,51,44;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 197113073 . G A 137 . DP=17;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,16,1;MQ=60;FQ=-78 GT:PL:GQ 1/1:170,51,0:99 chr1 197141243 . A C 59 . DP=3;VDB=0.0107;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:91,9,0:16 chr1 197316408 . T G 56 . DP=21;VDB=0.0118;AF1=0.5;AC1=1;DP4=7,0,13,0;MQ=60;FQ=59;PV4=1,5.3e-08,1,0.057 GT:PL:GQ 0/1:86,0,110:89 chr1 197316435 . T C 121 . DP=38;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,34,2;MQ=60;FQ=-135 GT:PL:GQ 1/1:154,108,0:99 chr1 197325908 . T G 222 . DP=88;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,70,9;MQ=60;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr1 197390368 . A G 222 . DP=70;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,23,45;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr1 197398086 . A G 225 . DP=44;VDB=0.0216;AF1=0.5;AC1=1;DP4=18,6,15,5;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 197447037 . T C 109 . DP=68;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,24,7,23;MQ=60;FQ=112;PV4=0.78,2e-20,1,1 GT:PL:GQ 0/1:139,0,255:99 chr1 197480927 . C T 48 . DP=45;VDB=0.0393;AF1=0.5;AC1=1;DP4=14,8,17,3;MQ=59;FQ=51;PV4=0.17,1.3e-22,1,0.3 GT:PL:GQ 0/1:78,0,255:81 chr1 197480986 . C T 97 . DP=45;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,10,14,10;MQ=59;FQ=100;PV4=0.53,6.7e-26,1,1 GT:PL:GQ 0/1:127,0,255:99 chr1 197482167 . C G 100 . DP=6;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:133,15,0:27 chr1 197510025 . G T 76 . DP=10;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:109,30,0:57 chr1 197510299 . G A 61.5 . DP=4;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:94,12,0:21 chr1 197515777 . A T 162 . DP=12;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:195,36,0:69 chr1 197515981 . T C 100 . DP=11;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=58;FQ=79;PV4=1,1,1,1 GT:PL:GQ 0/1:130,0,106:99 chr1 197576307 . AT ATT 166 . INDEL;DP=10;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-58.5 GT:PL:GQ 1/1:207,24,0:45 chr1 197621237 . G C 208 . DP=51;VDB=0.0271;AF1=0.5;AC1=1;DP4=25,2,22,2;MQ=60;FQ=211;PV4=1,0.33,0.15,0.096 GT:PL:GQ 0/1:238,0,249:99 chr1 197741951 . C A 70 . DP=30;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,7,5;MQ=60;FQ=-63 GT:PL:GQ 1/1:103,36,0:69 chr1 197742171 . C T 83.5 . DP=4;VDB=0.0027;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:116,12,0:21 chr1 197874949 . T C 179 . DP=52;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,36,14;MQ=60;FQ=-178 GT:PL:GQ 1/1:212,151,0:99 chr1 197890422 . C G 168 . DP=39;VDB=0.0164;AF1=0.5;AC1=1;DP4=20,1,16,1;MQ=59;FQ=171;PV4=1,0.24,0.44,0.46 GT:PL:GQ 0/1:198,0,211:99 chr1 197898072 . G A 22 . DP=20;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,1,7,0;MQ=58;FQ=25;PV4=1,4.6e-08,1,1 GT:PL:GQ 0/1:52,0,159:55 chr1 198214462 . G A 225 . DP=101;VDB=0.0392;AF1=0.5;AC1=1;DP4=35,14,31,19;MQ=59;FQ=225;PV4=0.4,0.013,1,0.19 GT:PL:GQ 0/1:255,0,255:99 chr1 198288709 . A G 147 . DP=36;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,18,1,15;MQ=60;FQ=150;PV4=1,0.076,1,0.34 GT:PL:GQ 0/1:177,0,235:99 chr1 200014762 . A G 46 . DP=19;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,4,1,12;MQ=60;FQ=49;PV4=0.49,5.1e-12,1,1 GT:PL:GQ 0/1:76,0,114:79 chr1 200014766 . G T 64 . DP=18;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,4,1,11;MQ=60;FQ=66.9;PV4=0.51,3.8e-08,1,1 GT:PL:GQ 0/1:94,0,111:97 chr1 200080463 . C T 16.1 . DP=20;VDB=0.0197;AF1=0.5;AC1=1;DP4=2,4,1,2;MQ=60;FQ=19.1;PV4=1,0.049,1,0.34 GT:PL:GQ 0/1:46,0,147:49 chr1 200089872 . C T 225 . DP=41;VDB=0.0099;AF1=0.5;AC1=1;DP4=18,1,16,5;MQ=60;FQ=171;PV4=0.19,1,1,1 GT:PL:GQ 0/1:255,0,198:99 chr1 200090120 . G A 90 . DP=30;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,9,2,18;MQ=60;FQ=92.7;PV4=1,1.3e-14,1,1 GT:PL:GQ 0/1:120,0,131:99 chr1 200143442 . T C 155 . DP=7;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:188,21,0:39 chr1 200182654 . T C 31 . DP=3;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:63,9,0:16 chr1 200311868 . C G 218 . DP=34;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,16;MQ=59;FQ=-126 GT:PL:GQ 1/1:251,99,0:99 chr1 200311910 . T A 142 . DP=26;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,10,15;MQ=60;FQ=-102 GT:PL:GQ 1/1:175,75,0:99 chr1 200538962 . G A 58 . DP=25;VDB=0.0244;AF1=0.5;AC1=1;DP4=9,4,10,1;MQ=60;FQ=61;PV4=0.33,4e-14,1,1 GT:PL:GQ 0/1:88,0,255:91 chr1 200544650 . Tacacacacacacacacacacaca Tacacacacacacacacaca 30.5 . INDEL;DP=25;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,25,0;MQ=57;FQ=-73.5 GT:PL:GQ 1/1:255,223,184:66 chr1 200558363 . T C 59 . DP=43;VDB=0.0190;AF1=0.5;AC1=1;DP4=20,8,12,3;MQ=59;FQ=62;PV4=0.72,1.2e-12,1,1 GT:PL:GQ 0/1:89,0,255:92 chr1 200561456 . T C 40 . DP=7;VDB=0.0060;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=43;PV4=1,0.38,1,0.3 GT:PL:GQ 0/1:70,0,95:73 chr1 200569392 . C A 222 . DP=116;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,97,15;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 200574959 . T C 73 . DP=9;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:106,27,0:51 chr1 200575744 . CTAAATAAATA CTAAATA 214 . INDEL;DP=19;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,18,1;MQ=51;FQ=-91.5 GT:PL:GQ 1/1:255,57,0:99 chr1 200575794 . A G 222 . DP=71;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,61,9;MQ=56;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr1 200578093 . G A 81 . DP=8;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:114,24,0:45 chr1 200583380 . T G 169 . DP=20;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,14,5;MQ=60;FQ=-84 GT:PL:GQ 1/1:202,57,0:99 chr1 200594240 . G A 127 . DP=27;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,22;MQ=60;FQ=-99 GT:PL:GQ 1/1:160,72,0:99 chr1 200618238 . T C 190 . DP=28;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,8;MQ=60;FQ=-111 GT:PL:GQ 1/1:223,84,0:99 chr1 200619530 . T C 170 . DP=18;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,17,0;MQ=59;FQ=-78 GT:PL:GQ 1/1:203,51,0:99 chr1 200635617 . G A 160 . DP=106;VDB=0.0400;AF1=0.5;AC1=1;DP4=40,16,21,23;MQ=59;FQ=163;PV4=0.023,9.4e-31,1,1 GT:PL:GQ 0/1:190,0,255:99 chr1 200824108 . C T 55 . DP=12;VDB=0.0095;AF1=0.5;AC1=1;DP4=0,8,0,4;MQ=60;FQ=58;PV4=1,0.34,1,1 GT:PL:GQ 0/1:85,0,149:88 chr1 200826395 . A T 6.98 . DP=5;VDB=0.0169;AF1=0.4999;AC1=1;DP4=0,2,2,0;MQ=60;FQ=9.52;PV4=0.33,0.026,1,0.13 GT:PL:GQ 0/1:36,0,63:37 chr1 200877786 . T C 124 . DP=14;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,2,10,0;MQ=58;FQ=22;PV4=0.038,1,0.3,1 GT:PL:GQ 0/1:154,0,49:52 chr1 200880869 . A C 141 . DP=23;VDB=0.0053;AF1=0.5;AC1=1;DP4=4,8,2,8;MQ=55;FQ=144;PV4=0.65,0.22,1,1 GT:PL:GQ 0/1:171,0,226:99 chr1 200880978 . C T 67.5 . DP=4;VDB=0.0309;AF1=1;AC1=2;DP4=0,0,2,2;MQ=33;FQ=-39 GT:PL:GQ 1/1:100,12,0:21 chr1 200881172 . C A 79 . DP=21;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,3,10,4;MQ=36;FQ=74.2;PV4=0.64,9.1e-05,0.44,1 GT:PL:GQ 0/1:109,0,102:99 chr1 200943793 . CAGGAAGGA CAGGA 214 . INDEL;DP=32;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,26,4;MQ=51;FQ=-125 GT:PL:GQ 1/1:255,90,0:99 chr1 200944840 . T G 8.44 . DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr1 200956288 . A G 222 . DP=59;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,30;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr1 200957691 . G C 177 . DP=35;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,6,27;MQ=60;FQ=-126 GT:PL:GQ 1/1:210,99,0:99 chr1 200959052 . T G 222 . DP=51;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,35,14;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 200959302 . G A 222 . DP=68;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,37,29;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr1 200960886 . C T 146 . DP=14;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,4,8;MQ=60;FQ=-63 GT:PL:GQ 1/1:179,36,0:69 chr1 200960898 . A T 120 . DP=9;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,6;MQ=60;FQ=-54 GT:PL:GQ 1/1:153,27,0:51 chr1 200960915 . T C 143 . DP=7;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:176,21,0:39 chr1 200965601 . G A 163 . DP=8;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,7;MQ=57;FQ=-51 GT:PL:GQ 1/1:196,24,0:45 chr1 200967490 . A G 44.1 . DP=7;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-48 GT:PL:GQ 1/1:77,21,0:39 chr1 200968879 . G A 3.01 . DP=4;VDB=0.0060;AF1=0.5001;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-3.28;PV4=1,0.032,1,0.29 GT:PL:GQ 0/1:30,0,29:28 chr1 200969766 . G A 154 . DP=105;VDB=0.0216;AF1=0.5;AC1=1;DP4=36,28,16,24;MQ=60;FQ=157;PV4=0.16,6.8e-22,1,1 GT:PL:GQ 0/1:184,0,255:99 chr1 200969921 . G A 146 . DP=38;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,13,6,12;MQ=59;FQ=149;PV4=1,2.8e-07,0.16,0.3 GT:PL:GQ 0/1:176,0,255:99 chr1 200969942 . A G 75 . DP=31;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,14,5,6;MQ=60;FQ=78;PV4=0.24,7.5e-11,1,1 GT:PL:GQ 0/1:105,0,255:99 chr1 200969983 . T C 4.77 . DP=13;VDB=0.0398;AF1=0.4999;AC1=1;DP4=1,7,0,4;MQ=60;FQ=6.99;PV4=1,0.00014,1,1 GT:PL:GQ 0/1:33,0,165:33 chr1 200971521 . G A 179 . DP=55;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,26,2,23;MQ=60;FQ=182;PV4=1,0.11,1,1 GT:PL:GQ 0/1:209,0,245:99 chr1 200971528 . G T 50 . DP=47;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,22,1,21;MQ=59;FQ=53;PV4=1,3.4e-14,1,1 GT:PL:GQ 0/1:80,0,223:83 chr1 201009556 . A G 122 . DP=32;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,6,7,7;MQ=60;FQ=125;PV4=0.71,7e-05,1,1 GT:PL:GQ 0/1:152,0,255:99 chr1 201009897 . T C 16.9 . DP=2;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:48,6,0:10 chr1 201012597 . G A 101 . DP=75;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,20,15,29;MQ=60;FQ=104;PV4=0.8,6e-34,1,1 GT:PL:GQ 0/1:131,0,255:99 chr1 201016296 . G A 159 . DP=44;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,13,9,3;MQ=60;FQ=162;PV4=0.48,1,1,0.25 GT:PL:GQ 0/1:189,0,255:99 chr1 201020105 . A G 184 . DP=24;VDB=0.0140;AF1=0.5;AC1=1;DP4=9,4,8,3;MQ=58;FQ=187;PV4=1,0.4,0.45,0.12 GT:PL:GQ 0/1:214,0,251:99 chr1 201020360 . G A 81 . DP=24;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,9,4,9;MQ=59;FQ=84;PV4=0.34,1.2e-13,1,0.45 GT:PL:GQ 0/1:111,0,180:99 chr1 201038687 . A G 159 . DP=66;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,20,16,17;MQ=60;FQ=162;PV4=0.62,1.6e-18,0.16,0.38 GT:PL:GQ 0/1:189,0,255:99 chr1 201044748 . A G 222 . DP=45;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,20,24;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 201047075 . A G 215 . DP=47;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,4,16,4;MQ=59;FQ=218;PV4=1,0.18,1,1 GT:PL:GQ 0/1:245,0,255:99 chr1 201047111 . A G 225 . DP=71;VDB=0.0345;AF1=0.5;AC1=1;DP4=30,8,23,8;MQ=59;FQ=225;PV4=0.78,1,1,0.23 GT:PL:GQ 0/1:255,0,255:99 chr1 201052310 . A T 194 . DP=40;VDB=0.0042;AF1=0.5;AC1=1;DP4=17,6,10,5;MQ=59;FQ=197;PV4=0.72,0.032,0.11,1 GT:PL:GQ 0/1:224,0,255:99 chr1 201052312 . A C 213 . DP=41;VDB=0.0042;AF1=0.5;AC1=1;DP4=17,7,11,5;MQ=59;FQ=216;PV4=1,1,0.11,1 GT:PL:GQ 0/1:243,0,255:99 chr1 201052474 . T C 51 . DP=39;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,23,0,15;MQ=59;FQ=54;PV4=1,4.1e-16,0.37,1 GT:PL:GQ 0/1:81,0,206:84 chr1 201060865 . G A 130 . DP=30;VDB=0.0359;AF1=0.5;AC1=1;DP4=4,11,6,8;MQ=60;FQ=133;PV4=0.45,1.9e-11,1,0.11 GT:PL:GQ 0/1:160,0,255:99 chr1 201079458 . T A 180 . DP=43;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,4,38;MQ=59;FQ=-153 GT:PL:GQ 1/1:213,126,0:99 chr1 201112981 . A G 222 . DP=34;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,25,6;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 201113118 . A G 162 . DP=29;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,9,20;MQ=60;FQ=-114 GT:PL:GQ 1/1:195,87,0:99 chr1 201115822 . A G 133 . DP=61;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,11,19,18;MQ=60;FQ=136;PV4=1,1.6e-25,1,1 GT:PL:GQ 0/1:163,0,255:99 chr1 201116018 . C G 143 . DP=17;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,3,14;MQ=60;FQ=-78 GT:PL:GQ 1/1:176,51,0:99 chr1 201122784 . C T 80 . DP=14;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:113,39,0:75 chr1 201122947 . T G 222 . DP=59;VDB=0.0365;AF1=1;AC1=2;DP4=0,1,21,37;MQ=60;FQ=-170;PV4=1,0.0011,0.45,1 GT:PL:GQ 1/1:255,143,0:99 chr1 201162411 . G A 74 . DP=32;VDB=0.0244;AF1=0.5;AC1=1;DP4=13,5,9,5;MQ=59;FQ=77;PV4=0.71,7.2e-10,1,1 GT:PL:GQ 0/1:104,0,255:99 chr1 201163191 . G T 41 . DP=21;VDB=0.0140;AF1=0.5;AC1=1;DP4=6,2,12,1;MQ=59;FQ=44;PV4=0.53,1.2e-10,0.22,1 GT:PL:GQ 0/1:71,0,166:74 chr1 201166281 . C T 165 . DP=55;VDB=0.0216;AF1=0.5;AC1=1;DP4=18,5,20,12;MQ=60;FQ=168;PV4=0.25,1.6e-11,0.2,1 GT:PL:GQ 0/1:195,0,255:99 chr1 201166383 . G A 225 . DP=78;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,23,18,19;MQ=59;FQ=225;PV4=0.64,0.2,0.49,0.35 GT:PL:GQ 0/1:255,0,255:99 chr1 201166435 . T C 222 . DP=61;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,27,31;MQ=58;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 201170772 . A G 70 . DP=19;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,17,0;MQ=60;FQ=-78 GT:PL:GQ 1/1:103,51,0:99 chr1 201170824 . C G 210 . DP=39;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,29,8;MQ=60;FQ=-138 GT:PL:GQ 1/1:243,111,0:99 chr1 201171007 . T G 109 . DP=13;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,12;MQ=60;FQ=-66 GT:PL:GQ 1/1:142,39,0:75 chr1 201173104 . C T 128 . DP=20;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,9,3,4;MQ=60;FQ=131;PV4=0.25,0.32,1,0.48 GT:PL:GQ 0/1:158,0,183:99 chr1 201174215 . C A 94 . DP=59;VDB=0.0322;AF1=0.5;AC1=1;DP4=20,11,13,10;MQ=60;FQ=97;PV4=0.58,4.2e-12,1,1 GT:PL:GQ 0/1:124,0,255:99 chr1 201175227 . C A 178 . DP=43;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,24,17;MQ=60;FQ=-150 GT:PL:GQ 1/1:211,123,0:99 chr1 201175715 . G T 222 . DP=53;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,31;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr1 201175768 . G C 114 . DP=57;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,16,13,15;MQ=60;FQ=117;PV4=1,5.5e-19,1,0.28 GT:PL:GQ 0/1:144,0,255:99 chr1 201176018 . A G 222 . DP=31;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,14;MQ=59;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 201176108 . G A 91 . DP=26;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,4,5,10;MQ=60;FQ=94;PV4=0.24,3e-10,1,0.29 GT:PL:GQ 0/1:121,0,195:99 chr1 201176968 . A G 90 . DP=42;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,15,3,15;MQ=59;FQ=93;PV4=0.18,3.1e-10,1,0.38 GT:PL:GQ 0/1:120,0,255:99 chr1 201177246 . T C 225 . DP=83;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,21,25,21;MQ=59;FQ=225;PV4=0.38,1,0.35,0.31 GT:PL:GQ 0/1:255,0,255:99 chr1 201177278 . C T 225 . DP=91;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,24,26,25;MQ=59;FQ=225;PV4=0.19,0.0038,1,0.44 GT:PL:GQ 0/1:255,0,255:99 chr1 201177538 . G T 180 . DP=83;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,11,33,20;MQ=60;FQ=183;PV4=1,6.6e-20,1,0.37 GT:PL:GQ 0/1:210,0,255:99 chr1 201178125 . G A 113 . DP=45;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,10,6,14;MQ=60;FQ=116;PV4=0.13,6.6e-16,1,1 GT:PL:GQ 0/1:143,0,255:99 chr1 201178470 . G A 134 . DP=63;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,13,22,14;MQ=59;FQ=137;PV4=0.44,3.8e-21,1,1 GT:PL:GQ 0/1:164,0,255:99 chr1 201178788 . A G 72 . DP=156;VDB=0.0216;AF1=0.5;AC1=1;DP4=49,41,50,14;MQ=51;FQ=75;PV4=0.0035,1.7e-58,9.3e-13,1 GT:PL:GQ 0/1:102,0,255:99 chr1 201178819 . G A 10.4 . DP=138;VDB=0.0392;AF1=0.5;AC1=1;DP4=62,44,12,18;MQ=52;FQ=13.2;PV4=0.097,2e-27,1,1 GT:PL:GQ 0/1:40,0,255:42 chr1 201178866 . A G 36 . DP=69;VDB=0.0118;AF1=0.5;AC1=1;DP4=12,35,7,15;MQ=54;FQ=39;PV4=0.58,8.9e-24,0.19,0.14 GT:PL:GQ 0/1:66,0,255:69 chr1 201181217 . A G 187 . DP=83;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,22,19,28;MQ=60;FQ=190;PV4=1,4.5e-12,0.19,1 GT:PL:GQ 0/1:217,0,255:99 chr1 201181223 . A G 222 . DP=81;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,32,47;MQ=60;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr1 201181920 . G T 76 . DP=69;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,22,14,11;MQ=60;FQ=79;PV4=0.3,6.6e-26,1,1 GT:PL:GQ 0/1:106,0,255:99 chr1 201182609 . G A 131 . DP=92;VDB=0.0393;AF1=0.5;AC1=1;DP4=33,14,29,11;MQ=60;FQ=134;PV4=1,1.6e-22,0.14,0.18 GT:PL:GQ 0/1:161,0,255:99 chr1 201182779 . A G 199 . DP=42;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,16,2,20;MQ=60;FQ=202;PV4=0.4,1,1,1 GT:PL:GQ 0/1:229,0,247:99 chr1 201183363 . C T 185 . DP=52;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,6,19,11;MQ=60;FQ=188;PV4=1,2.5e-09,1,1 GT:PL:GQ 0/1:215,0,248:99 chr1 201183402 . T C 157 . DP=54;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,9,13,16;MQ=60;FQ=160;PV4=0.4,1.5e-14,0.19,1 GT:PL:GQ 0/1:187,0,255:99 chr1 201183424 . G A 225 . DP=57;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,22,13,10;MQ=60;FQ=225;PV4=0.096,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 201184275 . C T 102 . DP=13;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,4,4,5;MQ=60;FQ=61;PV4=0.23,5.8e-06,1,1 GT:PL:GQ 0/1:132,0,88:91 chr1 201184878 . C A 225 . DP=60;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,8,19,7;MQ=59;FQ=225;PV4=1,0.11,0.43,1 GT:PL:GQ 0/1:255,0,255:99 chr1 201187764 . T C 222 . DP=36;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,14;MQ=59;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr1 201187828 . T C 222 . DP=38;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,16,22;MQ=59;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 201187954 . C T 6.79 . DP=3;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:37,6,0:7 chr1 201195119 . C T 141 . DP=54;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,12,17,6;MQ=60;FQ=144;PV4=0.38,2.5e-07,1,1 GT:PL:GQ 0/1:171,0,255:99 chr1 201285712 . C T 125 . DP=24;VDB=0.0393;AF1=0.5;AC1=1;DP4=8,2,7,5;MQ=60;FQ=128;PV4=0.38,2.1e-05,1,0.026 GT:PL:GQ 0/1:155,0,195:99 chr1 201285759 . A G 182 . DP=28;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,12,13;MQ=60;FQ=-102 GT:PL:GQ 1/1:215,75,0:99 chr1 201286628 . C G 137 . DP=26;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,3,10,5;MQ=60;FQ=140;PV4=1,1.2e-06,1,1 GT:PL:GQ 0/1:167,0,189:99 chr1 201286678 . C T 225 . DP=40;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,8,12,6;MQ=60;FQ=225;PV4=0.74,0.0051,1,0.2 GT:PL:GQ 0/1:255,0,255:99 chr1 201286771 . C T 151 . DP=40;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,12,7,13;MQ=60;FQ=154;PV4=1,3.1e-13,1,1 GT:PL:GQ 0/1:181,0,255:99 chr1 201288898 . A C 222 . DP=23;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,19,4;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr1 201288955 . G A 65 . DP=38;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,10,7,6;MQ=60;FQ=68;PV4=0.74,1.9e-18,1,0.41 GT:PL:GQ 0/1:95,0,255:98 chr1 201289175 . G A 85 . DP=8;VDB=0.0110;AF1=0.5;AC1=1;DP4=0,4,1,3;MQ=60;FQ=69.9;PV4=1,1,1,1 GT:PL:GQ 0/1:115,0,97:99 chr1 201289545 . G A 161 . DP=76;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,32,5,36;MQ=60;FQ=164;PV4=0.45,9.6e-21,1,1 GT:PL:GQ 0/1:191,0,231:99 chr1 201290968 . T G 167 . DP=17;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,16,0;MQ=60;FQ=-75 GT:PL:GQ 1/1:200,48,0:93 chr1 201290985 . C T 198 . DP=27;VDB=0.0081;AF1=0.5;AC1=1;DP4=10,1,13,3;MQ=60;FQ=150;PV4=0.62,0.058,1,0.24 GT:PL:GQ 0/1:228,0,177:99 chr1 201291283 . C T 159 . DP=27;VDB=0.0011;AF1=0.5;AC1=1;DP4=1,12,1,13;MQ=60;FQ=157;PV4=1,1,1,0.43 GT:PL:GQ 0/1:189,0,185:99 chr1 201292092 . C T 20 . DP=11;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,0,5,0;MQ=60;FQ=23;PV4=1,0.0058,1,0.074 GT:PL:GQ 0/1:50,0,114:53 chr1 201292110 . T C 141 . DP=22;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,20,2;MQ=60;FQ=-93 GT:PL:GQ 1/1:174,66,0:99 chr1 201331554 . T G 184 . DP=58;VDB=0.0322;AF1=0.5;AC1=1;DP4=21,18,15,4;MQ=60;FQ=187;PV4=0.087,0.22,1,1 GT:PL:GQ 0/1:214,0,255:99 chr1 201331664 . C A 111 . DP=26;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,10,3,12;MQ=60;FQ=114;PV4=0.61,2.2e-10,1,1 GT:PL:GQ 0/1:141,0,182:99 chr1 201334382 . G A 155 . DP=56;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,16,6,22;MQ=60;FQ=158;PV4=0.36,6.6e-09,1,0.34 GT:PL:GQ 0/1:185,0,255:99 chr1 201335899 . C T 21.5 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:54,12,0:21 chr1 201336984 . C T 91 . DP=62;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,21,9,16;MQ=60;FQ=94;PV4=0.78,3.1e-23,1,1 GT:PL:GQ 0/1:121,0,255:99 chr1 201338553 . T C 143 . DP=31;VDB=0.0042;AF1=0.5;AC1=1;DP4=2,16,1,11;MQ=60;FQ=146;PV4=1,1,1,1 GT:PL:GQ 0/1:173,0,223:99 chr1 201338586 . A G 6.98 . DP=14;VDB=0.0002;AF1=0.4999;AC1=1;DP4=0,9,0,5;MQ=60;FQ=9.53;PV4=1,1e-09,1,0.13 GT:PL:GQ 0/1:36,0,156:37 chr1 201338896 . T C 177 . DP=56;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,13,16,11;MQ=60;FQ=180;PV4=0.79,2.2e-12,0.16,0.2 GT:PL:GQ 0/1:207,0,255:99 chr1 201339043 . C T 133 . DP=14;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,6,1,7;MQ=60;FQ=92;PV4=1,1,1,1 GT:PL:GQ 0/1:163,0,119:99 chr1 201341175 . CAGAAGAGAAG CAGAAG 217 . INDEL;DP=46;VDB=0.0244;AF1=0.5;AC1=1;DP4=12,8,16,8;MQ=57;FQ=217;PV4=0.76,6.4e-05,0.015,0.19 GT:PL:GQ 0/1:255,0,255:99 chr1 201341341 . C T 201 . DP=32;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,10,3,17;MQ=56;FQ=143;PV4=1,1,0.031,0.48 GT:PL:GQ 0/1:231,0,170:99 chr1 201353827 . G C 19.1 . DP=12;VDB=0.0164;AF1=0.5;AC1=1;DP4=4,0,6,0;MQ=60;FQ=22;PV4=1,1.3e-06,1,0.27 GT:PL:GQ 0/1:49,0,95:52 chr1 201355522 . T C 97 . DP=23;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,3,9,4;MQ=60;FQ=100;PV4=1,6.5e-09,1,1 GT:PL:GQ 0/1:127,0,196:99 chr1 201355943 . C T 109 . DP=49;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,16,7,15;MQ=60;FQ=112;PV4=1,8.1e-19,1,0.11 GT:PL:GQ 0/1:139,0,255:99 chr1 201356393 . C T 106 . DP=7;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,5;MQ=60;FQ=-48 GT:PL:GQ 1/1:139,21,0:39 chr1 201356428 . C A 30 . DP=3;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:62,9,0:16 chr1 201360281 . A G 74 . DP=42;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,13,8,12;MQ=60;FQ=77;PV4=0.28,3.1e-23,1,0.24 GT:PL:GQ 0/1:104,0,243:99 chr1 201383643 . A C 6.2 . DP=10;VDB=0.0194;AF1=0.4999;AC1=1;DP4=6,1,3,0;MQ=60;FQ=8.65;PV4=1,0.0004,1,1 GT:PL:GQ 0/1:35,0,156:36 chr1 201437477 . A T 124 . DP=24;VDB=0.0140;AF1=0.5;AC1=1;DP4=10,4,7,2;MQ=60;FQ=127;PV4=1,0.48,1,1 GT:PL:GQ 0/1:154,0,228:99 chr1 201437832 . C T 142 . DP=29;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,9,4,13;MQ=60;FQ=136;PV4=1,0.0034,1,0.28 GT:PL:GQ 0/1:172,0,163:99 chr1 201687451 . A G 225 . DP=48;VDB=0.0190;AF1=0.5;AC1=1;DP4=18,7,16,5;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 201688733 . G A 117 . DP=31;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,12,5,3;MQ=58;FQ=120;PV4=0.69,1,1,1 GT:PL:GQ 0/1:147,0,255:99 chr1 201763184 . T C 77 . DP=16;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,13,2;MQ=58;FQ=-72 GT:PL:GQ 1/1:110,45,0:87 chr1 201772863 . TGGG TGGGG 176 . INDEL;DP=44;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,1,39;MQ=60;FQ=-155 GT:PL:GQ 1/1:217,120,0:99 chr1 201772891 . G A 166 . DP=24;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,9,1,14;MQ=60;FQ=107;PV4=1,0.48,1,1 GT:PL:GQ 0/1:196,0,134:99 chr1 201824390 . G A 149 . DP=34;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,8,6,14;MQ=60;FQ=152;PV4=0.49,1.4e-10,1,0.46 GT:PL:GQ 0/1:179,0,245:99 chr1 201837934 . Cgtgtgtgtgtgtgtgtgtgtgtg Cgtgtgtgtgtgtgtgtgtgtg 217 . INDEL;DP=35;VDB=0.0373;AF1=0.5;AC1=1;DP4=3,7,9,4;MQ=58;FQ=217;PV4=0.1,0.49,0.12,0.037 GT:PL:GQ 0/1:255,0,255:99 chr1 201840059 . GTTATTTTATTTTA GTTATTTTA 214 . INDEL;DP=23;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,16;MQ=51;FQ=-94.5 GT:PL:GQ 1/1:255,60,0:99 chr1 201840464 . T C 70 . DP=19;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,18;MQ=59;FQ=-84 GT:PL:GQ 1/1:103,57,0:99 chr1 201844128 . G A 222 . DP=40;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,25;MQ=59;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 201860626 . A G 222 . DP=47;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,10,34;MQ=59;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 201861016 . C G 89 . DP=64;VDB=0.0216;AF1=0.5;AC1=1;DP4=8,30,3,20;MQ=60;FQ=92;PV4=0.51,4.4e-29,1,0.48 GT:PL:GQ 0/1:119,0,255:99 chr1 201865763 . A G 162 . DP=78;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,14,58;MQ=60;FQ=-244 GT:PL:GQ 1/1:195,217,0:99 chr1 201868333 . C T 14.1 . DP=3;VDB=0.0170;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:46,9,0:14 chr1 201915550 . G A 53 . DP=3;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:85,9,0:16 chr1 201924749 . G C 216 . DP=39;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,27;MQ=60;FQ=-132 GT:PL:GQ 1/1:249,105,0:99 chr1 201926386 . CTTTTTTTT CTTTTTTTTT 45.5 . INDEL;DP=95;VDB=0.0322;AF1=1;AC1=2;DP4=1,1,63,23;MQ=59;FQ=-264;PV4=0.47,1,0.41,0.13 GT:PL:GQ 1/1:86,229,0:99 chr1 201966774 . T C 160 . DP=17;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,14;MQ=60;FQ=-69 GT:PL:GQ 1/1:193,42,0:81 chr1 201970562 . T C 214 . DP=70;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,21,48;MQ=59;FQ=-235 GT:PL:GQ 1/1:247,208,0:99 chr1 201981862 . T C 117 . DP=29;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,6,17;MQ=59;FQ=-70;PV4=1,6.2e-08,1,0.24 GT:PL:GQ 1/1:150,43,0:83 chr1 202092046 . C T 64 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:96,9,0:16 chr1 202092360 . G A 222 . DP=51;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,37,14;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 202092415 . A G 179 . DP=67;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,37,27;MQ=60;FQ=-220 GT:PL:GQ 1/1:212,193,0:99 chr1 202092580 . T C 222 . DP=54;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,23,31;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr1 202096815 . G A 222 . DP=77;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,61,14;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr1 202103802 . G A 36 . DP=3;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:68,9,0:16 chr1 202113835 . T G 25 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:57,9,0:15 chr1 202121643 . G A 18.1 . DP=7;VDB=0.0042;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=18.1;PV4=1,2e-05,1,1 GT:PL:GQ 0/1:48,0,48:48 chr1 202122783 . C A 12 . DP=2;VDB=0.0171;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr1 202129826 . T C 90 . DP=38;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,3,12,5;MQ=59;FQ=93;PV4=0.44,1.1e-07,0.16,0.15 GT:PL:GQ 0/1:120,0,226:99 chr1 202130754 . T C 222 . DP=18;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,3,14;MQ=60;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr1 202155543 . A C 192 . DP=47;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,35;MQ=58;FQ=-159 GT:PL:GQ 1/1:225,132,0:99 chr1 202156482 . G A 194 . DP=33;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,24,7;MQ=60;FQ=-120 GT:PL:GQ 1/1:227,93,0:99 chr1 202156628 . A C 193 . DP=20;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,6,14;MQ=60;FQ=-87 GT:PL:GQ 1/1:226,60,0:99 chr1 202163516 . C A 222 . DP=25;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,21,3;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 202163621 . G A 157 . DP=61;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,14,10,15;MQ=59;FQ=160;PV4=0.19,2e-10,1,0.45 GT:PL:GQ 0/1:187,0,255:99 chr1 202183308 . C T 150 . DP=27;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,7,9,7;MQ=60;FQ=153;PV4=0.44,5e-09,1,1 GT:PL:GQ 0/1:180,0,212:99 chr1 202196931 . G A 222 . DP=32;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,23,9;MQ=60;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr1 202197161 . C T 225 . DP=42;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,12,8,13;MQ=60;FQ=225;PV4=1,0.16,1,0.17 GT:PL:GQ 0/1:255,0,255:99 chr1 202266547 . C T 44 . DP=33;VDB=0.0216;AF1=0.5;AC1=1;DP4=15,6,12,0;MQ=60;FQ=47;PV4=0.065,3.3e-07,1,0.17 GT:PL:GQ 0/1:74,0,255:77 chr1 202266607 . C T 90 . DP=47;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,13,15,5;MQ=59;FQ=93;PV4=0.078,3.2e-14,1,1 GT:PL:GQ 0/1:120,0,255:99 chr1 202274936 . T C 225 . DP=32;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,3,6,10;MQ=60;FQ=198;PV4=0.033,1,1,1 GT:PL:GQ 0/1:255,0,225:99 chr1 202276494 . C T 120 . DP=92;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,26,11,32;MQ=59;FQ=123;PV4=0.35,4.8e-27,0.17,1 GT:PL:GQ 0/1:150,0,255:99 chr1 202278054 . C T 27 . DP=17;VDB=0.0001;AF1=0.5;AC1=1;DP4=7,0,10,0;MQ=60;FQ=30;PV4=1,3.5e-11,1,1 GT:PL:GQ 0/1:57,0,125:60 chr1 202287206 . T C 109 . DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,11,8,14;MQ=60;FQ=112;PV4=0.76,7.8e-17,1,0.28 GT:PL:GQ 0/1:139,0,255:99 chr1 202287537 . G A 132 . DP=38;VDB=0.0393;AF1=0.5;AC1=1;DP4=16,10,8,3;MQ=60;FQ=135;PV4=0.71,0.24,1,0.38 GT:PL:GQ 0/1:162,0,255:99 chr1 202287813 . T C 127 . DP=85;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,32,23,14;MQ=60;FQ=130;PV4=0.0073,3.6e-24,1,0.09 GT:PL:GQ 0/1:157,0,255:99 chr1 202304868 . T C 225 . DP=30;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,5,11,7;MQ=59;FQ=178;PV4=1,0.45,1,0.31 GT:PL:GQ 0/1:255,0,205:99 chr1 202318316 . A C 224 . DP=35;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,16,3,16;MQ=60;FQ=139;PV4=0.23,1,1,1 GT:PL:GQ 0/1:254,0,166:99 chr1 202386075 . T C 222 . DP=37;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,2,34;MQ=59;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 202457784 . T A 168 . DP=26;VDB=0.0140;AF1=0.5;AC1=1;DP4=3,9,1,13;MQ=60;FQ=170;PV4=0.31,1,0.093,1 GT:PL:GQ 0/1:198,0,205:99 chr1 202531741 . C T 26 . DP=6;VDB=0.0118;AF1=0.5016;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-6.18;PV4=1,0.029,1,1 GT:PL:GQ 0/1:56,0,22:25 chr1 202536848 . C T 158 . DP=25;VDB=0.0244;AF1=0.5;AC1=1;DP4=10,1,12,2;MQ=59;FQ=152;PV4=1,0.0015,1,0.14 GT:PL:GQ 0/1:188,0,180:99 chr1 202565948 . G A 151 . DP=54;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,15,13,11;MQ=60;FQ=154;PV4=0.79,7.9e-10,1,1 GT:PL:GQ 0/1:181,0,255:99 chr1 202572105 . GCCCCCCC GCCCCC 217 . INDEL;DP=76;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,10,20,19;MQ=60;FQ=177;PV4=0.32,0.042,1,1 GT:PL:GQ 0/1:255,0,212:99 chr1 202574784 . G A 176 . DP=59;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,17,15,13;MQ=60;FQ=179;PV4=0.6,1.8e-12,1,0.11 GT:PL:GQ 0/1:206,0,255:99 chr1 202703053 . G A 199 . DP=30;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,6,23;MQ=60;FQ=-114 GT:PL:GQ 1/1:232,87,0:99 chr1 202705455 . G C 136 . DP=34;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,19,14;MQ=60;FQ=-126 GT:PL:GQ 1/1:169,99,0:99 chr1 202715244 . GAAAAAAAA GAAAAAAAAA 39.5 . INDEL;DP=92;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,74,18;MQ=59;FQ=-290 GT:PL:GQ 1/1:80,255,0:99 chr1 202715284 . G A 222 . DP=127;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,86,37;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 202718202 . G A 222 . DP=139;VDB=0.0399;AF1=1;AC1=2;DP4=1,0,77,54;MQ=59;FQ=-282;PV4=1,1,1,0.22 GT:PL:GQ 1/1:255,255,0:99 chr1 202722277 . G A 43.5 . DP=4;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:76,12,0:21 chr1 202731986 . CCTCA CCTCAACTCA 130 . INDEL;DP=19;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,12;MQ=33;FQ=-70.5 GT:PL:GQ 1/1:171,36,0:69 chr1 202733238 . C T 190 . DP=21;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,6,13;MQ=59;FQ=-84 GT:PL:GQ 1/1:223,57,0:99 chr1 202735751 . T C 130 . DP=19;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,4,14;MQ=59;FQ=-81 GT:PL:GQ 1/1:163,54,0:99 chr1 202743892 . T C 42 . DP=30;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,18,1,11;MQ=60;FQ=45;PV4=0.4,2.3e-12,1,0.071 GT:PL:GQ 0/1:72,0,181:75 chr1 202794787 . T C 133 . DP=78;VDB=0.0399;AF1=0.5;AC1=1;DP4=29,18,19,10;MQ=59;FQ=136;PV4=0.81,1.7e-27,1,1 GT:PL:GQ 0/1:163,0,255:99 chr1 202888947 . T C 135 . DP=78;VDB=0.0244;AF1=0.5;AC1=1;DP4=27,20,20,11;MQ=59;FQ=138;PV4=0.64,1.8e-20,1,1 GT:PL:GQ 0/1:165,0,255:99 chr1 202956340 . T G 222 . DP=51;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,37;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 202978032 . C G 6.2 . DP=3;VDB=0.0165;AF1=0.5007;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-4.37;PV4=1,0.055,1,1 GT:PL:GQ 0/1:35,0,25:29 chr1 202983873 . G A 22 . DP=25;VDB=0.0033;AF1=0.5;AC1=1;DP4=14,0,10,1;MQ=59;FQ=25;PV4=0.44,6.9e-15,0.13,1 GT:PL:GQ 0/1:52,0,177:55 chr1 202985327 . T G 225 . DP=53;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,19,6,17;MQ=58;FQ=225;PV4=0.56,0.25,0.44,1 GT:PL:GQ 0/1:255,0,255:99 chr1 203004367 . C T 98 . DP=23;VDB=0.0216;AF1=0.5;AC1=1;DP4=11,3,5,2;MQ=57;FQ=101;PV4=1,0.25,1,0.46 GT:PL:GQ 0/1:128,0,229:99 chr1 203004627 . ACCCCC ACCCCCC 121 . INDEL;DP=17;VDB=0.0284;AF1=1;AC1=2;DP4=0,0,9,6;MQ=58;FQ=-79.5 GT:PL:GQ 1/1:162,45,0:87 chr1 203006179 . G A 176 . DP=40;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,2,18,1;MQ=60;FQ=179;PV4=1,1,1,1 GT:PL:GQ 0/1:206,0,224:99 chr1 203006243 . A G 222 . DP=90;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,54,28;MQ=60;FQ=-274 GT:PL:GQ 1/1:255,247,0:99 chr1 203008174 . G C 186 . DP=40;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,13,25;MQ=60;FQ=-141 GT:PL:GQ 1/1:219,114,0:99 chr1 203008286 . C G 132 . DP=29;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,4,5,9;MQ=60;FQ=135;PV4=0.13,2.6e-07,1,1 GT:PL:GQ 0/1:162,0,231:99 chr1 203012705 . C G 41 . DP=32;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,18,0,10;MQ=59;FQ=44;PV4=0.54,2.5e-08,1,1 GT:PL:GQ 0/1:71,0,239:74 chr1 203012906 . G A 13.2 . DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:45,9,0:14 chr1 203040673 . A G 35.3 . DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:68,15,0:27 chr1 203053768 . T C 194 . DP=26;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,6,19;MQ=59;FQ=-102 GT:PL:GQ 1/1:227,75,0:99 chr1 203055101 . A G 43 . DP=47;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,15,4,10;MQ=59;FQ=46;PV4=0.73,1.9e-18,1,1 GT:PL:GQ 0/1:73,0,255:76 chr1 203098275 . T G 196 . DP=125;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,41,21,49;MQ=60;FQ=199;PV4=0.42,8.1e-31,1,1 GT:PL:GQ 0/1:226,0,255:99 chr1 203137784 . ACT ACTCT 214 . INDEL;DP=39;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,24,13;MQ=59;FQ=-146 GT:PL:GQ 1/1:255,111,0:99 chr1 203148633 . A G 222 . DP=23;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,14,8;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 203152801 . T C 95 . DP=40;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,31,3;MQ=59;FQ=-103;PV4=1,4e-07,1,1 GT:PL:GQ 1/1:128,76,0:99 chr1 203153555 . C T 37.8 . DP=8;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:69,6,0:10 chr1 203153634 . C G 174 . DP=70;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,47,18;MQ=60;FQ=-223 GT:PL:GQ 1/1:207,196,0:99 chr1 203154532 . A G 54.1 . DP=6;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:87,18,0:33 chr1 203155882 . G C 14.1 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:46,9,0:14 chr1 203175107 . A C 109 . DP=10;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,9;MQ=60;FQ=-57 GT:PL:GQ 1/1:142,30,0:57 chr1 203186093 . G C 61 . DP=47;VDB=0.0400;AF1=0.5;AC1=1;DP4=18,13,10,6;MQ=60;FQ=64;PV4=1,1.9e-14,0.083,0.25 GT:PL:GQ 0/1:91,0,255:94 chr1 203187341 . TGGTCAAGGTCAAGGTCAAGGT TGGTCAAGGTCAAGGTCAAGGTCAAGGT 84.5 . INDEL;DP=21;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,7,1,5;MQ=54;FQ=87.5;PV4=1,0.26,0.00083,1 GT:PL:GQ 0/1:122,0,255:99 chr1 203188692 . A C 109 . DP=16;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,14,1;MQ=60;FQ=-72 GT:PL:GQ 1/1:142,45,0:87 chr1 203192137 . T C 225 . DP=59;VDB=0.0081;AF1=0.5;AC1=1;DP4=20,4,32,3;MQ=60;FQ=209;PV4=0.43,1,1,0.25 GT:PL:GQ 0/1:255,0,236:99 chr1 203192567 . G T 27 . DP=6;VDB=0.0033;AF1=0.5006;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-3.53;PV4=1,0.008,1,0.33 GT:PL:GQ 0/1:57,0,26:29 chr1 203192820 . C T 202 . DP=29;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,6,22;MQ=60;FQ=-111 GT:PL:GQ 1/1:235,84,0:99 chr1 203194186 . C T 211 . DP=39;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,29,10;MQ=59;FQ=-144 GT:PL:GQ 1/1:244,117,0:99 chr1 203311736 . T C 153 . DP=13;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,5,2,6;MQ=60;FQ=85;PV4=0.49,0.14,1,0.28 GT:PL:GQ 0/1:183,0,112:99 chr1 203317162 . C T 138 . DP=53;VDB=0.0400;AF1=0.5;AC1=1;DP4=18,16,11,8;MQ=59;FQ=141;PV4=0.78,1.7e-10,1,0.22 GT:PL:GQ 0/1:168,0,255:99 chr1 203652444 . A G 222 . DP=60;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,24,34;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 203667409 . T C 222 . DP=70;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,32,33;MQ=59;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr1 203679934 . A G 212 . DP=48;VDB=0.0398;AF1=0.5;AC1=1;DP4=23,3,14,4;MQ=60;FQ=215;PV4=0.42,0.25,1,0.26 GT:PL:GQ 0/1:242,0,255:99 chr1 203708772 . C T 141 . DP=86;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,11,21,36;MQ=60;FQ=144;PV4=0.097,1.2e-23,0.25,0.16 GT:PL:GQ 0/1:171,0,255:99 chr1 203743122 . G A 178 . DP=104;VDB=0.0345;AF1=0.5;AC1=1;DP4=26,24,22,26;MQ=60;FQ=181;PV4=0.55,6.6e-25,1,1 GT:PL:GQ 0/1:208,0,255:99 chr1 203743653 . C T 84 . DP=59;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,17,12,12;MQ=60;FQ=87;PV4=1,1.4e-25,1,1 GT:PL:GQ 0/1:114,0,255:99 chr1 203766827 . T C 127 . DP=137;VDB=0.0345;AF1=0.5;AC1=1;DP4=40,39,27,28;MQ=60;FQ=130;PV4=1,2.9e-35,1,1 GT:PL:GQ 0/1:157,0,255:99 chr1 203768328 . T C 119 . DP=221;VDB=0.0399;AF1=0.5;AC1=1;DP4=72,43,60,39;MQ=59;FQ=122;PV4=0.78,7.7e-82,1,0.078 GT:PL:GQ 0/1:149,0,255:99 chr1 203769532 . G A 102 . DP=33;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,15,3,11;MQ=59;FQ=105;PV4=1,8.4e-09,0.41,0.27 GT:PL:GQ 0/1:132,0,255:99 chr1 203787700 . T C 222 . DP=12;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,7,5;MQ=60;FQ=-63 GT:PL:GQ 1/1:255,36,0:69 chr1 203803016 . A G 222 . DP=34;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,31;MQ=59;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr1 203821200 . G A 179 . DP=18;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,18,0;MQ=55;FQ=-81 GT:PL:GQ 1/1:212,54,0:99 chr1 204006095 . A G 186 . DP=43;VDB=0.0164;AF1=0.5;AC1=1;DP4=21,6,13,3;MQ=59;FQ=189;PV4=1,0.27,1,0.048 GT:PL:GQ 0/1:216,0,255:99 chr1 204006538 . T C 7.77 . DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:39,9,0:11 chr1 204006597 . G A 222 . DP=19;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,2;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr1 204010389 . G T 153 . DP=36;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,4,32;MQ=60;FQ=-135 GT:PL:GQ 1/1:186,108,0:99 chr1 204082002 . C T 61 . DP=17;VDB=0.0190;AF1=0.5;AC1=1;DP4=10,2,5,0;MQ=60;FQ=64;PV4=1,0.39,1,0.28 GT:PL:GQ 0/1:91,0,217:94 chr1 204086324 . C T 150 . DP=51;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,18,7,16;MQ=59;FQ=153;PV4=0.77,1.3e-12,0.44,1 GT:PL:GQ 0/1:180,0,255:99 chr1 204103618 . G A 44 . DP=24;VDB=0.0244;AF1=0.5;AC1=1;DP4=15,2,5,0;MQ=60;FQ=47;PV4=1,0.19,1,1 GT:PL:GQ 0/1:74,0,233:77 chr1 204110334 . A G 162 . DP=88;VDB=0.0380;AF1=0.5;AC1=1;DP4=29,11,34,12;MQ=60;FQ=165;PV4=1,1.3e-23,1,1 GT:PL:GQ 0/1:192,0,255:99 chr1 204116452 . G A 70 . DP=20;VDB=0.0081;AF1=0.5;AC1=1;DP4=8,0,11,1;MQ=60;FQ=73;PV4=1,9.2e-10,1,0.2 GT:PL:GQ 0/1:100,0,134:99 chr1 204130376 . G C 116 . DP=42;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,0,20,5;MQ=60;FQ=117;PV4=0.14,1.7e-09,1,0.13 GT:PL:GQ 0/1:146,0,149:99 chr1 204198209 . A G 4.13 . DP=13;VDB=0.0225;AF1=0.4998;AC1=1;DP4=0,10,1,1;MQ=60;FQ=6.2;PV4=0.17,0.26,1,1 GT:PL:GQ 0/1:32,0,155:31 chr1 204199614 . C T 52 . DP=27;VDB=0.0118;AF1=0.5;AC1=1;DP4=9,3,12,2;MQ=60;FQ=55;PV4=0.63,8.2e-14,1,0.24 GT:PL:GQ 0/1:82,0,211:85 chr1 204210750 . C A 137 . DP=31;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,9,8,9;MQ=60;FQ=140;PV4=0.47,2.2e-10,1,1 GT:PL:GQ 0/1:167,0,227:99 chr1 204210791 . G A 68 . DP=35;VDB=0.0325;AF1=0.5;AC1=1;DP4=13,4,8,4;MQ=60;FQ=71;PV4=0.68,1.4e-13,1,0.43 GT:PL:GQ 0/1:98,0,255:99 chr1 204214975 . Tacacacacacacacacacacacacacacaca Tacacacacacacacacacacacaca 47.5 . INDEL;DP=13;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,1,0,5;MQ=36;FQ=8.19;PV4=1,0.22,0,1 GT:PL:GQ 0/1:85,0,42:45 chr1 204216410 . C T 160 . DP=55;VDB=0.0271;AF1=0.5;AC1=1;DP4=19,10,15,10;MQ=59;FQ=163;PV4=0.78,2.7e-19,0.063,0.15 GT:PL:GQ 0/1:190,0,255:99 chr1 204216468 . C T 91 . DP=63;VDB=0.0393;AF1=0.5;AC1=1;DP4=16,19,12,12;MQ=60;FQ=94;PV4=0.8,1.5e-24,1,0.43 GT:PL:GQ 0/1:121,0,255:99 chr1 204216601 . G A 94 . DP=32;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,9,4,13;MQ=60;FQ=97;PV4=0.69,7.4e-10,1,1 GT:PL:GQ 0/1:124,0,238:99 chr1 204219850 . G A 217 . DP=35;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,10,3,16;MQ=60;FQ=207;PV4=0.42,0.3,1,0.11 GT:PL:GQ 0/1:247,0,234:99 chr1 204230581 . G A 79 . DP=20;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,7,3,8;MQ=60;FQ=82;PV4=0.6,2.1e-09,1,1 GT:PL:GQ 0/1:109,0,161:99 chr1 204234196 . GGTGTGTGTGTGTGTGTG GGTGTGTGTGTGTGTGTGTG 217 . INDEL;DP=52;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,18,2,17;MQ=58;FQ=217;PV4=0.67,1,0.44,1 GT:PL:GQ 0/1:255,0,255:99 chr1 204237416 . C T 86 . DP=29;VDB=0.0343;AF1=0.5;AC1=1;DP4=8,12,1,7;MQ=60;FQ=89;PV4=0.21,0.078,1,1 GT:PL:GQ 0/1:116,0,255:99 chr1 204379617 . T C 222 . DP=62;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,33,28;MQ=60;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr1 204400783 . A G 30 . DP=9;VDB=0.0022;AF1=0.5;AC1=1;DP4=3,1,4,0;MQ=60;FQ=33;PV4=1,0.16,1,0.44 GT:PL:GQ 0/1:60,0,97:63 chr1 204409281 . C G 61 . DP=20;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,19,0;MQ=60;FQ=-84 GT:PL:GQ 1/1:94,57,0:99 chr1 204413297 . C T 159 . DP=53;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,19,20;MQ=59;FQ=-144 GT:PL:GQ 1/1:192,117,0:99 chr1 204413299 . G A 158 . DP=53;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,19;MQ=59;FQ=-135 GT:PL:GQ 1/1:191,108,0:99 chr1 204429838 . C G 193 . DP=33;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,19;MQ=60;FQ=-126 GT:PL:GQ 1/1:226,99,0:99 chr1 204433093 . A C 129 . DP=21;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,16,2;MQ=60;FQ=-81 GT:PL:GQ 1/1:162,54,0:99 chr1 204433511 . TC TCC 93.7 . INDEL;DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,5,0;MQ=55;FQ=-49.5 GT:PL:GQ 1/1:134,15,0:27 chr1 204434277 . T C 93 . DP=19;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,16,1;MQ=60;FQ=-78 GT:PL:GQ 1/1:126,51,0:99 chr1 204438334 . C T 202 . DP=58;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,17,39;MQ=60;FQ=-196 GT:PL:GQ 1/1:235,169,0:99 chr1 204438643 . G T 222 . DP=53;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,25;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 204506107 . C T 123 . DP=25;VDB=0.0392;AF1=1;AC1=2;DP4=1,0,13,10;MQ=60;FQ=-69;PV4=1,0.00021,1,1 GT:PL:GQ 1/1:156,42,0:81 chr1 204507207 . G A 59 . DP=38;VDB=0.0345;AF1=0.5;AC1=1;DP4=20,1,13,2;MQ=60;FQ=62;PV4=0.56,2e-19,1,1 GT:PL:GQ 0/1:89,0,216:92 chr1 204512100 . T C 59 . DP=15;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,12;MQ=60;FQ=-66 GT:PL:GQ 1/1:92,39,0:75 chr1 204515863 . C T 79 . DP=17;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,14,1;MQ=60;FQ=-72 GT:PL:GQ 1/1:112,45,0:87 chr1 204516025 . A G 218 . DP=148;VDB=0.0380;AF1=1;AC1=2;DP4=2,1,82,54;MQ=59;FQ=-282;PV4=1,1.6e-06,0.4,1 GT:PL:GQ 1/1:251,255,0:99 chr1 204518842 . C A 125 . DP=35;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,2,31;MQ=60;FQ=-126 GT:PL:GQ 1/1:158,99,0:99 chr1 204587240 . G A 222 . DP=56;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,31,23;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr1 204913271 . C G 39 . DP=13;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,2,6,1;MQ=60;FQ=42;PV4=0.56,5.1e-08,1,0.3 GT:PL:GQ 0/1:69,0,150:72 chr1 204915393 . A G 132 . DP=29;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,6;MQ=60;FQ=-105 GT:PL:GQ 1/1:165,78,0:99 chr1 204915757 . G A 188 . DP=79;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,17,18,26;MQ=60;FQ=191;PV4=0.49,3e-19,0.19,0.32 GT:PL:GQ 0/1:218,0,255:99 chr1 204917680 . C T 43 . DP=25;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,1,10,0;MQ=58;FQ=46;PV4=1,9.2e-07,1,0.14 GT:PL:GQ 0/1:73,0,195:76 chr1 204917708 . Aaaaacaaaacaaaacaaaacaaaa Aaaaacaaaacaaaacaaaa 217 . INDEL;DP=42;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,2,13,6;MQ=59;FQ=217;PV4=0.23,3.4e-10,0.083,1 GT:PL:GQ 0/1:255,0,255:99 chr1 204917909 . T C 116 . DP=27;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,15,0,11;MQ=59;FQ=119;PV4=1,1,1,1 GT:PL:GQ 0/1:146,0,202:99 chr1 204926980 . C T 117 . DP=32;VDB=0.0081;AF1=0.5;AC1=1;DP4=3,8,5,14;MQ=60;FQ=120;PV4=1,2.9e-13,1,0.4 GT:PL:GQ 0/1:147,0,198:99 chr1 204931077 . G A 6.2 . DP=7;VDB=0.0173;AF1=0.4999;AC1=1;DP4=5,0,2,0;MQ=57;FQ=8.65;PV4=1,0.21,1,0.46 GT:PL:GQ 0/1:35,0,105:36 chr1 204943285 . A T 221 . DP=50;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,34,14;MQ=60;FQ=-171 GT:PL:GQ 1/1:254,144,0:99 chr1 204943947 . C A 83 . DP=38;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,9,3,15;MQ=59;FQ=86;PV4=0.41,4.5e-11,1,1 GT:PL:GQ 0/1:113,0,219:99 chr1 204943992 . A G 166 . DP=23;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,5,12;MQ=60;FQ=-78 GT:PL:GQ 1/1:199,51,0:99 chr1 204945338 . CTATA CTA 217 . INDEL;DP=24;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,6,2,13;MQ=60;FQ=217;PV4=0.59,0.0048,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 204966428 . C G 186 . DP=80;VDB=0.0398;AF1=0.5;AC1=1;DP4=19,12,28,16;MQ=59;FQ=189;PV4=1,5.5e-18,1,0.02 GT:PL:GQ 0/1:216,0,255:99 chr1 204966690 . G A 221 . DP=52;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,43;MQ=59;FQ=-178 GT:PL:GQ 1/1:254,151,0:99 chr1 204966749 . A G 154 . DP=20;VDB=0.0019;AF1=0.5;AC1=1;DP4=2,7,2,8;MQ=60;FQ=132;PV4=1,1,1,0.3 GT:PL:GQ 0/1:184,0,159:99 chr1 204978533 . A G 200 . DP=154;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,68,79;MQ=60;FQ=-282 GT:PL:GQ 1/1:233,255,0:99 chr1 204978643 . C A 167 . DP=167;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,71,58;MQ=59;FQ=-282 GT:PL:GQ 1/1:200,255,0:99 chr1 204978704 . G A 169 . DP=163;VDB=0.0399;AF1=0.5;AC1=1;DP4=31,59,22,47;MQ=59;FQ=172;PV4=0.87,2.3e-32,1,0.32 GT:PL:GQ 0/1:199,0,255:99 chr1 205272926 . C T 144 . DP=54;VDB=0.0271;AF1=0.5;AC1=1;DP4=17,11,21,5;MQ=60;FQ=147;PV4=0.14,6.4e-11,0.15,1 GT:PL:GQ 0/1:174,0,255:99 chr1 205272983 . C G 165 . DP=70;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,15,23,9;MQ=60;FQ=168;PV4=0.32,3.9e-16,1,0.22 GT:PL:GQ 0/1:195,0,255:99 chr1 205273142 . G C 58 . DP=45;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,13,7,9;MQ=60;FQ=61;PV4=0.76,1.3e-11,1,1 GT:PL:GQ 0/1:88,0,255:91 chr1 205275206 . A T 30.5 . DP=22;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,1;MQ=54;FQ=-39 GT:PL:GQ 1/1:63,12,0:21 chr1 205275207 . G T 17.1 . DP=22;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,1;MQ=52;FQ=-36 GT:PL:GQ 1/1:49,9,0:15 chr1 205275421 . A G 222 . DP=37;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,24;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 205312280 . C G 3.01 . DP=12;VDB=0.0059;AF1=0.4997;AC1=1;DP4=8,0,3,0;MQ=58;FQ=4.77;PV4=1,0.00043,1,1 GT:PL:GQ 0/1:30,0,131:28 chr1 205312767 . G T 5.46 . DP=6;VDB=0.0070;AF1=0.4999;AC1=1;DP4=0,2,0,3;MQ=60;FQ=7.78;PV4=1,0.0022,1,1 GT:PL:GQ 0/1:34,0,56:34 chr1 205325609 . C A 210 . DP=44;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,24,20;MQ=59;FQ=-159 GT:PL:GQ 1/1:243,132,0:99 chr1 205385498 . C T 222 . DP=62;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,24,35;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 205492756 . A G 222 . DP=32;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,18;MQ=60;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr1 205495392 . A G 222 . DP=68;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,25,40;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr1 205495976 . A G 192 . DP=69;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,25,40;MQ=60;FQ=-223 GT:PL:GQ 1/1:225,196,0:99 chr1 205498021 . T C 22.5 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:55,12,0:21 chr1 205499577 . C G 149 . DP=20;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,13;MQ=59;FQ=-87 GT:PL:GQ 1/1:182,60,0:99 chr1 205499660 . C T 222 . DP=23;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,7;MQ=59;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 205500543 . T C 222 . DP=79;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,40,36;MQ=59;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr1 205554085 . G C 183 . DP=67;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,23,40;MQ=59;FQ=-217 GT:PL:GQ 1/1:216,190,0:99 chr1 205554095 . A C 222 . DP=60;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,17,42;MQ=59;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 205561372 . C T 118 . DP=37;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,6,13;MQ=59;FQ=-84 GT:PL:GQ 1/1:151,57,0:99 chr1 205615791 . A G 225 . DP=49;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,3,22,7;MQ=60;FQ=213;PV4=0.72,0.2,0.21,0.38 GT:PL:GQ 0/1:255,0,240:99 chr1 205615947 . C A 37 . DP=13;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,0,11;MQ=58;FQ=-60 GT:PL:GQ 1/1:70,33,0:62 chr1 205689807 . T G 222 . DP=49;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,3,42;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 205739396 . T G 131 . DP=66;VDB=0.0345;AF1=1;AC1=2;DP4=1,0,43,22;MQ=60;FQ=-186;PV4=1,1.7e-11,1,0.26 GT:PL:GQ 1/1:164,159,0:99 chr1 205744138 . G T 125 . DP=34;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,5,22;MQ=60;FQ=-108 GT:PL:GQ 1/1:158,81,0:99 chr1 205764640 . G A 194 . DP=49;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,13,33;MQ=60;FQ=-165 GT:PL:GQ 1/1:227,138,0:99 chr1 205766159 . CAAA CAA 214 . INDEL;DP=61;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,24,34;MQ=60;FQ=-210 GT:PL:GQ 1/1:255,175,0:99 chr1 205767885 . G A 222 . DP=118;VDB=0.0392;AF1=1;AC1=2;DP4=2,0,52,62;MQ=60;FQ=-282;PV4=0.21,1,1,1 GT:PL:GQ 1/1:255,255,0:99 chr1 205801872 . A G 222 . DP=83;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,31,50;MQ=60;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr1 205814497 . T C 222 . DP=100;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,50,46;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 205890679 . T C 146 . DP=37;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,9;MQ=59;FQ=-126 GT:PL:GQ 1/1:179,99,0:99 chr1 205896475 . C T 162 . DP=22;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,13,9;MQ=60;FQ=-93 GT:PL:GQ 1/1:195,66,0:99 chr1 206224412 . T C 108 . DP=91;VDB=0.0399;AF1=0.5;AC1=1;DP4=40,12,25,11;MQ=59;FQ=111;PV4=0.47,2.5e-24,1,0.15 GT:PL:GQ 0/1:138,0,255:99 chr1 206224830 . G C 140 . DP=68;VDB=0.0298;AF1=0.5;AC1=1;DP4=25,16,12,11;MQ=60;FQ=143;PV4=0.6,6.3e-14,0.092,1 GT:PL:GQ 0/1:170,0,255:99 chr1 206225011 . G C 78 . DP=73;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,27,13,10;MQ=59;FQ=81;PV4=0.45,2.4e-23,0.3,1 GT:PL:GQ 0/1:108,0,255:99 chr1 206230986 . G A 119 . DP=31;VDB=0.0373;AF1=0.5;AC1=1;DP4=9,6,6,7;MQ=60;FQ=122;PV4=0.71,1.4e-06,1,1 GT:PL:GQ 0/1:149,0,254:99 chr1 206231203 . G A 81 . DP=24;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,8,4,9;MQ=60;FQ=84;PV4=0.66,3.2e-10,1,0.062 GT:PL:GQ 0/1:111,0,191:99 chr1 206516159 . C T 40 . DP=3;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,3,0;MQ=29;FQ=-36 GT:PL:GQ 1/1:72,9,0:16 chr1 206516261 . C T 111 . DP=39;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,1,18,0;MQ=33;FQ=114;PV4=1,0.0054,1,1 GT:PL:GQ 0/1:141,0,170:99 chr1 206566904 . T C 107 . DP=69;VDB=0.0019;AF1=0.5;AC1=1;DP4=25,3,35,4;MQ=49;FQ=110;PV4=1,7.9e-21,9.3e-05,1 GT:PL:GQ 0/1:137,0,235:99 chr1 206567100 . C T 61 . DP=59;VDB=0.0190;AF1=0.5;AC1=1;DP4=8,24,4,20;MQ=56;FQ=64;PV4=0.53,2.1e-29,0.28,0.31 GT:PL:GQ 0/1:91,0,255:94 chr1 206579798 . T C 4.13 . DP=11;VDB=0.0014;AF1=0.4998;AC1=1;DP4=1,5,5,0;MQ=19;FQ=6.2;PV4=0.015,1.8e-07,0.21,1 GT:PL:GQ 0/1:32,0,64:31 chr1 206579936 . A G 10.4 . DP=41;VDB=0.0365;AF1=0.5;AC1=1;DP4=23,0,14,0;MQ=18;FQ=13.2;PV4=1,3.3e-08,0.26,0.26 GT:PL:GQ 0/1:40,0,62:42 chr1 206603535 . G A 116 . DP=57;VDB=0.0322;AF1=0.5;AC1=1;DP4=20,13,16,8;MQ=60;FQ=119;PV4=0.78,2e-20,1,1 GT:PL:GQ 0/1:146,0,255:99 chr1 206623685 . G T 162 . DP=46;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,28,16;MQ=59;FQ=-133;PV4=1,0.0035,1,0.24 GT:PL:GQ 1/1:195,106,0:99 chr1 206623866 . C T 74 . DP=8;VDB=0.0027;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=74;PV4=1,1,1,0.018 GT:PL:GQ 0/1:104,0,104:99 chr1 206626607 . G A 167 . DP=35;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,8,5,6;MQ=60;FQ=170;PV4=0.28,0.4,1,0.41 GT:PL:GQ 0/1:197,0,255:99 chr1 206626779 . A G 94 . DP=14;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-63 GT:PL:GQ 1/1:127,36,0:69 chr1 206634429 . A G 95 . DP=56;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,17,12,6;MQ=60;FQ=98;PV4=0.56,9e-19,1,0.28 GT:PL:GQ 0/1:125,0,255:99 chr1 206646427 . C A 66.1 . DP=8;VDB=0.0008;AF1=0.5129;AC1=1;DP4=1,0,6,1;MQ=60;FQ=-14.2;PV4=1,0.0055,1,1 GT:PL:GQ 0/1:96,0,13:16 chr1 206647742 . A G 184 . DP=42;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,25,14;MQ=60;FQ=-144 GT:PL:GQ 1/1:217,117,0:99 chr1 206647787 . T C 222 . DP=46;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,18,28;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 206648147 . T G 115 . DP=31;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,4,12,3;MQ=60;FQ=118;PV4=1,5.3e-10,1,1 GT:PL:GQ 0/1:145,0,249:99 chr1 206648378 . G A 32 . DP=6;VDB=0.0070;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=60;FQ=27.2;PV4=1,0.0033,1,1 GT:PL:GQ 0/1:62,0,55:57 chr1 206658569 . G A 159 . DP=60;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,16,11,16;MQ=60;FQ=162;PV4=0.79,3.4e-15,0.15,1 GT:PL:GQ 0/1:189,0,255:99 chr1 206665896 . C G 163 . DP=61;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,16,12,19;MQ=60;FQ=166;PV4=0.79,6.6e-16,1,1 GT:PL:GQ 0/1:193,0,255:99 chr1 206667441 . G A 75 . DP=55;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,30,3,19;MQ=59;FQ=78;PV4=0.67,8.3e-25,0.04,1 GT:PL:GQ 0/1:105,0,255:99 chr1 206669465 . C T 59 . DP=33;VDB=0.0384;AF1=0.5;AC1=1;DP4=13,6,10,3;MQ=60;FQ=62;PV4=0.7,7e-15,1,0.36 GT:PL:GQ 0/1:89,0,255:92 chr1 206670827 . G T 195 . DP=26;VDB=0.0244;AF1=0.5;AC1=1;DP4=10,1,13,2;MQ=59;FQ=151;PV4=1,1,1,1 GT:PL:GQ 0/1:225,0,178:99 chr1 206680983 . A C 222 . DP=16;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,11,4;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr1 206757857 . C A 225 . DP=119;VDB=0.0399;AF1=0.5;AC1=1;DP4=36,25,27,26;MQ=59;FQ=225;PV4=0.45,1,0.24,0.45 GT:PL:GQ 0/1:255,0,255:99 chr1 206758077 . T A 222 . DP=54;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,8,42;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 206765254 . C T 56 . DP=9;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,2,1,5;MQ=60;FQ=16.1;PV4=1,0.00024,1,0.47 GT:PL:GQ 0/1:86,0,43:46 chr1 206772194 . actct act 149 . INDEL;DP=6;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,6,0;MQ=56;FQ=-52.5 GT:PL:GQ 1/1:189,18,0:33 chr1 206772753 . A G 60.1 . DP=7;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,7,0;MQ=57;FQ=-48 GT:PL:GQ 1/1:93,21,0:39 chr1 206773659 . A G 182 . DP=67;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,22,42;MQ=60;FQ=-220 GT:PL:GQ 1/1:215,193,0:99 chr1 206810946 . C T 37 . DP=21;VDB=0.0066;AF1=0.5;AC1=1;DP4=9,0,12,0;MQ=59;FQ=40;PV4=1,1.1e-09,1,1 GT:PL:GQ 0/1:67,0,137:70 chr1 206904464 . C T 80 . DP=35;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,3,16,5;MQ=60;FQ=83;PV4=1,1.2e-14,1,1 GT:PL:GQ 0/1:110,0,221:99 chr1 206943351 . T C 55.3 . DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:88,15,0:27 chr1 206944233 . A G 99 . DP=58;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,14,16,11;MQ=59;FQ=102;PV4=0.79,5.3e-17,0.029,1 GT:PL:GQ 0/1:129,0,255:99 chr1 206944645 . T C 71.3 . DP=10;VDB=0.0053;AF1=1;AC1=2;DP4=1,0,9,0;MQ=60;FQ=-42;PV4=1,1,1,0.15 GT:PL:GQ 1/1:104,15,0:27 chr1 206944861 . A C 20.1 . DP=5;VDB=0.0309;AF1=0.501;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-4.76;PV4=1,0.01,1,1 GT:PL:GQ 0/1:50,0,24:27 chr1 207014472 . A C 218 . DP=58;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,14,42;MQ=60;FQ=-196 GT:PL:GQ 1/1:251,169,0:99 chr1 207015957 . T C 163 . DP=29;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,15,14;MQ=60;FQ=-114 GT:PL:GQ 1/1:196,87,0:99 chr1 207040659 . G A 136 . DP=12;VDB=0.0014;AF1=1;AC1=2;DP4=1,0,11,0;MQ=58;FQ=-34;PV4=1,0.49,1,0.13 GT:PL:GQ 1/1:168,7,0:12 chr1 207087053 . A G 78 . DP=33;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,3,12,5;MQ=60;FQ=81;PV4=0.7,8.6e-16,1,1 GT:PL:GQ 0/1:108,0,225:99 chr1 207134104 . G T 150 . DP=100;VDB=0.0399;AF1=0.5;AC1=1;DP4=31,25,30,12;MQ=60;FQ=153;PV4=0.14,2e-29,0.42,0.48 GT:PL:GQ 0/1:180,0,255:99 chr1 207135736 . G C 151 . DP=84;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,32,13,19;MQ=60;FQ=154;PV4=0.82,1.7e-21,1,0.43 GT:PL:GQ 0/1:181,0,255:99 chr1 207195779 . A G 149 . DP=37;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,16,21;MQ=59;FQ=-138 GT:PL:GQ 1/1:182,111,0:99 chr1 207235954 . G A 222 . DP=115;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,61,51;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 207238419 . C T 222 . DP=27;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,14,13;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr1 207241437 . ttga t 14.4 . INDEL;DP=4;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,2,0;MQ=29;FQ=-40.5 GT:PL:GQ 1/1:53,6,0:10 chr1 207262980 . T G 64 . DP=40;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,17,3,16;MQ=60;FQ=67;PV4=1,1.1e-22,1,1 GT:PL:GQ 0/1:94,0,255:97 chr1 207263829 . A G 145 . DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,15,7,13;MQ=59;FQ=148;PV4=0.77,1.5e-10,1,1 GT:PL:GQ 0/1:175,0,255:99 chr1 207269980 . C T 160 . DP=69;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,20,11,24;MQ=59;FQ=163;PV4=0.61,5.1e-26,1,1 GT:PL:GQ 0/1:190,0,255:99 chr1 207297484 . G C 68 . DP=24;VDB=0.0393;AF1=0.5;AC1=1;DP4=5,8,3,8;MQ=60;FQ=71;PV4=0.68,2.4e-07,1,1 GT:PL:GQ 0/1:98,0,250:99 chr1 207297680 . T C 225 . DP=79;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,26,7,23;MQ=60;FQ=225;PV4=0.14,1,0.11,1 GT:PL:GQ 0/1:255,0,255:99 chr1 207300259 . A G 148 . DP=64;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,22,7,28;MQ=60;FQ=151;PV4=1,4.7e-24,1,1 GT:PL:GQ 0/1:178,0,255:99 chr1 207304900 . T C 120 . DP=40;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,8,17,3;MQ=60;FQ=123;PV4=0.16,1.5e-19,1,0.36 GT:PL:GQ 0/1:150,0,255:99 chr1 207500293 . C T 13.2 . DP=24;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,7,0,12;MQ=60;FQ=16.1;PV4=0.4,1.1e-14,1,1 GT:PL:GQ 0/1:43,0,161:46 chr1 207504669 . G A 127 . DP=44;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,20,0,23;MQ=60;FQ=130;PV4=0.48,0.0039,1,0.21 GT:PL:GQ 0/1:157,0,207:99 chr1 207510289 . T C 220 . DP=39;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,12,24;MQ=58;FQ=-135 GT:PL:GQ 1/1:253,108,0:99 chr1 207510548 . A G 8.64 . DP=21;VDB=0.0014;AF1=0.5;AC1=1;DP4=11,0,8,0;MQ=60;FQ=11.3;PV4=1,7.3e-10,1,0.27 GT:PL:GQ 0/1:38,0,165:40 chr1 207510596 . G A 225 . DP=91;VDB=0.0216;AF1=0.5;AC1=1;DP4=43,7,33,6;MQ=59;FQ=225;PV4=1,0.26,0.21,1 GT:PL:GQ 0/1:255,0,255:99 chr1 207520376 . T C 162 . DP=38;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,2,17,7;MQ=60;FQ=160;PV4=0.45,1.5e-09,1,0.34 GT:PL:GQ 0/1:192,0,188:99 chr1 207627998 . C T 3.98 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr1 207643949 . G A 48.5 . DP=4;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:81,12,0:21 chr1 207653395 . C A 222 . DP=143;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,59,77;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 207679229 . T G 169 . DP=95;VDB=0.0365;AF1=0.5;AC1=1;DP4=36,12,28,17;MQ=58;FQ=172;PV4=0.26,4.8e-32,0.0098,0.39 GT:PL:GQ 0/1:199,0,255:99 chr1 207679307 . A G 151 . DP=106;VDB=0.0392;AF1=0.5;AC1=1;DP4=33,27,20,22;MQ=54;FQ=154;PV4=0.55,1.2e-32,9.1e-08,1 GT:PL:GQ 0/1:181,0,255:99 chr1 207753621 . A G 199 . DP=52;VDB=0.0099;AF1=0.5;AC1=1;DP4=6,25,4,16;MQ=60;FQ=202;PV4=1,0.038,1,0.45 GT:PL:GQ 0/1:229,0,255:99 chr1 207758232 . A G 225 . DP=96;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,32,13,34;MQ=59;FQ=225;PV4=1,0.28,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 207782916 . A T 188 . DP=80;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,31,45;MQ=60;FQ=-256 GT:PL:GQ 1/1:221,229,0:99 chr1 207782931 . A G 225 . DP=74;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,20,12,22;MQ=60;FQ=225;PV4=0.34,0.32,1,0.2 GT:PL:GQ 0/1:255,0,255:99 chr1 207784968 . A G 137 . DP=137;VDB=0.0392;AF1=0.5;AC1=1;DP4=38,39,40,16;MQ=60;FQ=140;PV4=0.013,1.2e-47,1,0.24 GT:PL:GQ 0/1:167,0,255:99 chr1 207790088 . C G 164 . DP=109;VDB=0.0400;AF1=0.5;AC1=1;DP4=23,22,34,28;MQ=60;FQ=167;PV4=0.84,1e-35,0.2,1 GT:PL:GQ 0/1:194,0,255:99 chr1 207795320 . A G 225 . DP=47;VDB=0.0400;AF1=0.5;AC1=1;DP4=18,11,8,8;MQ=59;FQ=225;PV4=0.53,1,0.091,0.4 GT:PL:GQ 0/1:255,0,255:99 chr1 207850717 . G A 225 . DP=51;VDB=0.0014;AF1=0.5;AC1=1;DP4=20,2,24,5;MQ=59;FQ=200;PV4=0.68,1,1,1 GT:PL:GQ 0/1:255,0,227:99 chr1 207851611 . A G 169 . DP=94;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,26,21,27;MQ=59;FQ=172;PV4=1,2.4e-42,0.085,0.4 GT:PL:GQ 0/1:199,0,255:99 chr1 207857254 . A G 225 . DP=170;VDB=0.0365;AF1=0.5;AC1=1;DP4=47,42,34,45;MQ=60;FQ=225;PV4=0.22,0.15,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 207872507 . G A 93 . DP=11;VDB=0.0001;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=59;FQ=82.8;PV4=1,0.22,0.093,0.35 GT:PL:GQ 0/1:123,0,110:99 chr1 207875116 . GAGAAGA GAGA 193 . INDEL;DP=12;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,3,0,8;MQ=56;FQ=86.5;PV4=1,8.1e-07,0.2,0.27 GT:PL:GQ 0/1:231,0,121:99 chr1 207888626 . C T 225 . DP=80;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,17,22,14;MQ=58;FQ=225;PV4=1,0.22,0.00024,1 GT:PL:GQ 0/1:255,0,255:99 chr1 207888704 . T C 225 . DP=58;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,23,8,20;MQ=55;FQ=225;PV4=0.33,0.34,3.1e-05,1 GT:PL:GQ 0/1:255,0,255:99 chr1 207888739 . G T 70 . DP=32;VDB=0.0081;AF1=0.5;AC1=1;DP4=3,15,1,12;MQ=54;FQ=73;PV4=0.62,1.2e-11,1,1 GT:PL:GQ 0/1:100,0,235:99 chr1 207888760 . C T 94 . DP=18;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,8,2,5;MQ=52;FQ=97;PV4=0.55,1,0.00028,1 GT:PL:GQ 0/1:124,0,167:99 chr1 207890866 . T C 34 . DP=84;VDB=0.0365;AF1=0.5;AC1=1;DP4=30,16,18,7;MQ=59;FQ=37;PV4=0.61,4.1e-28,0.00033,1 GT:PL:GQ 0/1:64,0,255:67 chr1 207934849 . A G 33 . DP=19;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,8,0,10;MQ=60;FQ=36;PV4=1,9.7e-13,1,1 GT:PL:GQ 0/1:63,0,145:66 chr1 207941191 . G T 9.52 . DP=22;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,8,0,9;MQ=60;FQ=12.3;PV4=1,5e-13,1,1 GT:PL:GQ 0/1:39,0,175:41 chr1 207959070 . T C 90 . DP=13;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,5,3,2;MQ=58;FQ=93;PV4=0.56,0.47,0.13,1 GT:PL:GQ 0/1:120,0,165:99 chr1 207975949 . T C 99 . DP=34;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,13,2,15;MQ=59;FQ=102;PV4=0.66,1.7e-12,0.17,1 GT:PL:GQ 0/1:129,0,240:99 chr1 207992546 . G A 93 . DP=13;VDB=0.0053;AF1=0.5;AC1=1;DP4=2,5,0,6;MQ=58;FQ=96;PV4=0.46,1,1,1 GT:PL:GQ 0/1:123,0,158:99 chr1 208062260 . T C 51 . DP=17;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,5,2,8;MQ=60;FQ=54;PV4=1,3.1e-07,1,1 GT:PL:GQ 0/1:81,0,128:84 chr1 208062471 . A C 110 . DP=34;VDB=0.0216;AF1=0.5;AC1=1;DP4=14,4,13,2;MQ=60;FQ=113;PV4=0.66,5.6e-09,1,1 GT:PL:GQ 0/1:140,0,255:99 chr1 208062973 . A T 178 . DP=71;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,18,18,20;MQ=59;FQ=181;PV4=1,1.1e-18,1,0.18 GT:PL:GQ 0/1:208,0,255:99 chr1 208063067 . G A 225 . DP=40;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,9,5,15;MQ=59;FQ=225;PV4=0.3,1,0.19,0.48 GT:PL:GQ 0/1:255,0,255:99 chr1 208200737 . C G 131 . DP=32;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,9,5,10;MQ=60;FQ=134;PV4=0.72,5.7e-07,1,0.41 GT:PL:GQ 0/1:161,0,255:99 chr1 208204794 . CTGTTTGTT CTGTT 146 . INDEL;DP=9;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,9,0;MQ=38;FQ=-61.5 GT:PL:GQ 1/1:187,27,0:51 chr1 208211887 . T C 66.1 . DP=7;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:99,21,0:39 chr1 208212397 . A G 52.1 . DP=7;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:85,21,0:39 chr1 208213125 . A G 222 . DP=61;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,25,34;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 208219164 . A C 54 . DP=11;VDB=0.0095;AF1=0.5;AC1=1;DP4=7,0,4,0;MQ=56;FQ=57;PV4=1,1,0.35,1 GT:PL:GQ 0/1:84,0,129:87 chr1 208225909 . G A 118 . DP=20;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,9,4,3;MQ=59;FQ=121;PV4=0.36,0.13,1,1 GT:PL:GQ 0/1:148,0,247:99 chr1 208233984 . C G 80 . DP=32;VDB=0.0118;AF1=0.5;AC1=1;DP4=15,2,11,2;MQ=60;FQ=83;PV4=1,6.2e-14,1,0.2 GT:PL:GQ 0/1:110,0,238:99 chr1 208233998 . C T 64 . DP=43;VDB=0.0190;AF1=0.5;AC1=1;DP4=21,3,15,2;MQ=60;FQ=67;PV4=1,1.2e-15,1,1 GT:PL:GQ 0/1:94,0,255:97 chr1 208255877 . T C 91 . DP=40;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,25,0,11;MQ=59;FQ=94;PV4=0.56,1,1,1 GT:PL:GQ 0/1:121,0,255:99 chr1 208270244 . A C 81 . DP=19;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,5,2,9;MQ=60;FQ=84;PV4=0.6,2.6e-09,1,0.11 GT:PL:GQ 0/1:111,0,189:99 chr1 208276399 . CCTCTCTCT CCTCTCTCTCTCT 214 . INDEL;DP=68;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,47,19;MQ=55;FQ=-234 GT:PL:GQ 1/1:255,199,0:99 chr1 208390086 . G C 162 . DP=73;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,16,23,10;MQ=60;FQ=165;PV4=0.33,6.8e-18,0.15,1 GT:PL:GQ 0/1:192,0,255:99 chr1 208391098 . T C 182 . DP=95;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,24,22,29;MQ=59;FQ=185;PV4=1,2.2e-24,0.34,1 GT:PL:GQ 0/1:212,0,255:99 chr1 208391254 . C T 141 . DP=36;VDB=0.0398;AF1=0.5;AC1=1;DP4=1,16,5,13;MQ=59;FQ=144;PV4=0.18,3.4e-11,1,0.34 GT:PL:GQ 0/1:171,0,202:99 chr1 209782343 . A G 225 . DP=46;VDB=0.0244;AF1=0.5;AC1=1;DP4=15,8,14,5;MQ=59;FQ=225;PV4=0.74,1,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr1 209782545 . A G 23 . DP=12;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,6,1,5;MQ=58;FQ=26;PV4=1,3e-08,1,1 GT:PL:GQ 0/1:53,0,125:56 chr1 209784663 . A C 62.1 . DP=8;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:95,21,0:39 chr1 209784927 . G T 128 . DP=29;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,17,1,10;MQ=60;FQ=131;PV4=1,0.0057,1,0.44 GT:PL:GQ 0/1:158,0,214:99 chr1 209785206 . G A 221 . DP=59;VDB=0.0400;AF1=0.5;AC1=1;DP4=21,14,18,6;MQ=59;FQ=223;PV4=0.27,0.33,1,1 GT:PL:GQ 0/1:251,0,255:99 chr1 209785957 . T G 9.31 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr1 209786078 . G A 222 . DP=50;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,34,13;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 209788514 . G A 156 . DP=17;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,0,7,2;MQ=60;FQ=121;PV4=0.47,0.066,1,0.15 GT:PL:GQ 0/1:186,0,148:99 chr1 209788703 . T C 94 . DP=34;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,13,3,10;MQ=59;FQ=97;PV4=0.7,7.2e-06,1,1 GT:PL:GQ 0/1:124,0,255:99 chr1 209792015 . AC ACC 214 . INDEL;DP=42;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,4,37;MQ=59;FQ=-158 GT:PL:GQ 1/1:255,123,0:99 chr1 209799253 . A G 225 . DP=43;VDB=0.0343;AF1=0.5;AC1=1;DP4=8,14,9,9;MQ=60;FQ=225;PV4=0.52,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 209800976 . C T 56 . DP=54;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,18,4,14;MQ=60;FQ=59;PV4=0.14,7.5e-14,1,1 GT:PL:GQ 0/1:86,0,255:89 chr1 209804095 . G A 68.5 . DP=4;VDB=0.0161;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:101,12,0:21 chr1 209807972 . G A 59 . DP=20;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,9,3,5;MQ=60;FQ=62;PV4=0.64,7.9e-08,1,1 GT:PL:GQ 0/1:89,0,224:92 chr1 209811886 . T G 205 . DP=39;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,24,15;MQ=60;FQ=-144 GT:PL:GQ 1/1:238,117,0:99 chr1 209812063 . T C 14.2 . DP=7;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,2,0,5;MQ=60;FQ=10.5;PV4=1,0.0037,1,1 GT:PL:GQ 0/1:44,0,38:40 chr1 209849002 . T C 161 . DP=35;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,30,3;MQ=60;FQ=-126 GT:PL:GQ 1/1:194,99,0:99 chr1 209849399 . AG A 144 . INDEL;DP=6;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,4;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:184,18,0:33 chr1 209849406 . T G 70.3 . DP=5;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,3;MQ=60;FQ=-42 GT:PL:GQ 1/1:103,15,0:27 chr1 209950681 . T C 49.1 . DP=7;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,2,4;MQ=60;FQ=-45 GT:PL:GQ 1/1:82,18,0:33 chr1 209950760 . C G 190 . DP=21;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,14,6;MQ=59;FQ=-87 GT:PL:GQ 1/1:223,60,0:99 chr1 209951400 . C G 225 . DP=81;VDB=0.0365;AF1=0.5;AC1=1;DP4=30,11,32,6;MQ=60;FQ=225;PV4=0.28,0.23,1,0.11 GT:PL:GQ 0/1:255,0,255:99 chr1 209952865 . C G 212 . DP=17;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,15;MQ=59;FQ=-75 GT:PL:GQ 1/1:245,48,0:93 chr1 210001586 . A G 106 . DP=9;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,2,7;MQ=60;FQ=-54 GT:PL:GQ 1/1:139,27,0:51 chr1 210003388 . A C 131 . DP=16;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,14,2;MQ=57;FQ=-75 GT:PL:GQ 1/1:164,48,0:93 chr1 210003402 . T C 121 . DP=19;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,16,3;MQ=58;FQ=-84 GT:PL:GQ 1/1:154,57,0:99 chr1 210004199 . C G 222 . DP=52;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,36,14;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 210006603 . C T 187 . DP=90;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,64,20;MQ=59;FQ=-280 GT:PL:GQ 1/1:220,253,0:99 chr1 210008367 . C G 168 . DP=14;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:201,39,0:75 chr1 210008673 . T G 73 . DP=16;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:106,45,0:87 chr1 210012102 . A G 38.3 . DP=6;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:71,15,0:27 chr1 210015568 . GCTCTC GCTC 213 . INDEL;DP=9;VDB=0.0343;AF1=1;AC1=2;DP4=0,0,8,1;MQ=54;FQ=-61.5 GT:PL:GQ 1/1:254,27,0:51 chr1 210407031 . G T 194 . DP=22;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,1,8,5;MQ=60;FQ=103;PV4=0.34,1,1,0.42 GT:PL:GQ 0/1:224,0,130:99 chr1 210502580 . A G 21 . DP=6;VDB=0.0218;AF1=0.5;AC1=1;DP4=0,3,2,1;MQ=60;FQ=24;PV4=0.4,0.04,1,0.22 GT:PL:GQ 0/1:51,0,71:54 chr1 210536078 . C G 214 . DP=51;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,38,11;MQ=60;FQ=-175 GT:PL:GQ 1/1:247,148,0:99 chr1 210577873 . G C 222 . DP=22;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,20,2;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 210577884 . G A 77 . DP=24;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,2,11,1;MQ=59;FQ=80;PV4=0.59,5.9e-08,1,1 GT:PL:GQ 0/1:107,0,185:99 chr1 210577901 . T C 58 . DP=24;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,4,6,2;MQ=59;FQ=61;PV4=1,4.5e-09,0.081,0.49 GT:PL:GQ 0/1:88,0,255:91 chr1 210686570 . A G 188 . DP=27;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,20;MQ=58;FQ=-108 GT:PL:GQ 1/1:221,81,0:99 chr1 210686614 . A G 148 . DP=17;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,7,1,9;MQ=57;FQ=110;PV4=1,0.046,0.12,0.23 GT:PL:GQ 0/1:178,0,137:99 chr1 210761462 . G C 89 . DP=15;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,14;MQ=58;FQ=-69 GT:PL:GQ 1/1:122,42,0:81 chr1 210847514 . A T 26 . DP=6;VDB=0.0186;AF1=0.5;AC1=1;DP4=4,0,2,0;MQ=60;FQ=29;PV4=1,1,1,1 GT:PL:GQ 0/1:56,0,102:59 chr1 210856585 . G T 120 . DP=31;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,1,15,2;MQ=59;FQ=123;PV4=1,2.2e-07,1,1 GT:PL:GQ 0/1:150,0,186:99 chr1 210857457 . A G 225 . DP=31;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,11,5,14;MQ=60;FQ=141;PV4=0.36,1,1,1 GT:PL:GQ 0/1:255,0,168:99 chr1 210970823 . TG TGG 189 . INDEL;DP=31;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,3,15,2;MQ=60;FQ=158;PV4=0.64,1,1,0.32 GT:PL:GQ 0/1:227,0,193:99 chr1 211276828 . C T 159 . DP=63;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,11,19,11;MQ=60;FQ=162;PV4=0.8,1.6e-18,1,0.27 GT:PL:GQ 0/1:189,0,255:99 chr1 211280724 . TAAAAAAAAAAAAAA TAAAAAAAAAAAA 29.6 . INDEL;DP=50;VDB=0.0400;AF1=0.5129;AC1=1;DP4=0,9,5,14;MQ=57;FQ=-21.6;PV4=0.14,1,0.12,0.22 GT:PL:GQ 0/1:67,0,13:16 chr1 211380770 . T C 95 . DP=91;VDB=0.0380;AF1=0.5;AC1=1;DP4=33,23,18,14;MQ=59;FQ=98;PV4=0.83,1.8e-32,0.34,1 GT:PL:GQ 0/1:125,0,255:99 chr1 211432798 . tctcctcctcctcctcct tCTCctcctcctcctcctcct 217 . INDEL;DP=10;VDB=0.0053;AF1=0.5;AC1=1;DP4=2,1,6,1;MQ=58;FQ=105;PV4=1,1,0.27,0.45 GT:PL:GQ 0/1:255,0,140:99 chr1 211447625 . G A 43 . DP=50;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,17,8,4;MQ=60;FQ=46;PV4=0.53,7.9e-21,1,1 GT:PL:GQ 0/1:73,0,255:76 chr1 211451393 . TATCATCA TATCA 15.6 . INDEL;DP=3;VDB=0.0107;AF1=0.5;AC1=1;DP4=1,0,2,0;MQ=52;FQ=14.5;PV4=1,0.21,0.33,0.2 GT:PL:GQ 0/1:53,0,51:52 chr1 211451467 . T C 207 . DP=47;VDB=0.0190;AF1=0.5;AC1=1;DP4=22,1,22,2;MQ=57;FQ=184;PV4=1,1,0.34,1 GT:PL:GQ 0/1:237,0,211:99 chr1 211452678 . G A 81 . DP=22;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,6,3,12;MQ=57;FQ=84;PV4=1,6.6e-12,0.47,0.48 GT:PL:GQ 0/1:111,0,135:99 chr1 211452728 . G A 115 . DP=15;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,7,0,8;MQ=59;FQ=109;PV4=1,0.34,1,1 GT:PL:GQ 0/1:145,0,137:99 chr1 211527609 . C A 45.1 . DP=7;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:78,18,0:33 chr1 211846876 . A G 225 . DP=43;VDB=0.0393;AF1=0.5;AC1=1;DP4=10,10,10,13;MQ=59;FQ=225;PV4=0.76,1,0.18,1 GT:PL:GQ 0/1:255,0,255:99 chr1 212217971 . CT CTTT 117 . INDEL;DP=8;VDB=0.0081;AF1=0.5;AC1=1;DP4=3,0,3,1;MQ=57;FQ=56.5;PV4=1,1,0.22,0.35 GT:PL:GQ 0/1:155,0,91:94 chr1 212220847 . G A 83 . DP=15;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,9,0,6;MQ=60;FQ=86;PV4=1,0.018,1,0.045 GT:PL:GQ 0/1:113,0,163:99 chr1 212236157 . G T 65 . DP=33;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,32,0;MQ=60;FQ=-123 GT:PL:GQ 1/1:98,96,0:99 chr1 212240063 . G A 43 . DP=22;VDB=0.0099;AF1=0.5;AC1=1;DP4=11,0,11,0;MQ=60;FQ=46;PV4=1,5.8e-12,1,0.44 GT:PL:GQ 0/1:73,0,166:76 chr1 212251103 . A G 174 . DP=9;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,2,6;MQ=60;FQ=-51 GT:PL:GQ 1/1:207,24,0:45 chr1 212251402 . G A 133 . DP=51;VDB=0.0033;AF1=0.5;AC1=1;DP4=20,4,21,5;MQ=60;FQ=136;PV4=1,4.6e-16,0.17,1 GT:PL:GQ 0/1:163,0,255:99 chr1 212273639 . C T 222 . DP=75;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,22,47;MQ=59;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr1 212274413 . A C 151 . DP=23;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,5,17;MQ=60;FQ=-93 GT:PL:GQ 1/1:184,66,0:99 chr1 212475573 . T C 35 . DP=21;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,10,0,8;MQ=60;FQ=38;PV4=0.49,2.1e-08,1,0.099 GT:PL:GQ 0/1:65,0,208:68 chr1 212515613 . C T 62 . DP=38;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,18,3,12;MQ=59;FQ=65;PV4=1,1.1e-17,1,1 GT:PL:GQ 0/1:92,0,255:95 chr1 212521639 . T G 222 . DP=121;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,79,35;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 212526288 . C T 222 . DP=101;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,48,47;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 212560327 . A G 161 . DP=90;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,31,56;MQ=60;FQ=-282 GT:PL:GQ 1/1:194,255,0:99 chr1 212588167 . G T 100 . DP=41;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,19,3,13;MQ=59;FQ=103;PV4=1,0.00015,0.4,0.27 GT:PL:GQ 0/1:130,0,246:99 chr1 212619339 . T C 225 . DP=33;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,12,5,14;MQ=59;FQ=185;PV4=0.67,0.13,0.2,1 GT:PL:GQ 0/1:255,0,212:99 chr1 212798977 . A G 133 . DP=36;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,8,11,6;MQ=59;FQ=136;PV4=0.48,1.5e-11,1,1 GT:PL:GQ 0/1:163,0,255:99 chr1 212799870 . A G 148 . DP=36;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,7;MQ=60;FQ=-126 GT:PL:GQ 1/1:181,99,0:99 chr1 212799949 . C T 222 . DP=46;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,21,22;MQ=59;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 212900487 . A G 94 . DP=10;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:127,27,0:51 chr1 212911836 . T C 225 . DP=76;VDB=0.0345;AF1=0.5;AC1=1;DP4=26,10,25,15;MQ=60;FQ=225;PV4=0.47,0.48,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 212955454 . G A 94 . DP=73;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,18,21,6;MQ=60;FQ=97;PV4=0.13,1.1e-27,1,0.35 GT:PL:GQ 0/1:124,0,255:99 chr1 212960866 . C T 86 . DP=22;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,0,12,3;MQ=60;FQ=72.9;PV4=0.53,1.1e-10,1,1 GT:PL:GQ 0/1:116,0,100:99 chr1 212970375 . A G 113 . DP=20;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,18,1;MQ=60;FQ=-84 GT:PL:GQ 1/1:146,57,0:99 chr1 212985466 . C T 71 . DP=6;VDB=0.0049;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=19.1;PV4=1,1,1,1 GT:PL:GQ 0/1:101,0,46:49 chr1 213009469 . A G 101 . DP=59;VDB=0.0216;AF1=0.5;AC1=1;DP4=5,25,3,24;MQ=60;FQ=104;PV4=0.71,8.6e-17,1,1 GT:PL:GQ 0/1:131,0,255:99 chr1 213031948 . G C 6.2 . DP=8;VDB=0.0244;AF1=0.4999;AC1=1;DP4=2,1,3,2;MQ=60;FQ=8.6;PV4=1,0.0045,1,1 GT:PL:GQ 0/1:35,0,54:36 chr1 213056819 . A G 148 . DP=41;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,9,30;MQ=59;FQ=-144 GT:PL:GQ 1/1:181,117,0:99 chr1 213056892 . A G 37 . DP=18;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,8,0,9;MQ=60;FQ=40;PV4=1,1.1e-11,1,0.3 GT:PL:GQ 0/1:67,0,180:70 chr1 213061362 . T A 69 . DP=24;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,5,7,7;MQ=60;FQ=72;PV4=1,1.4e-13,1,0.17 GT:PL:GQ 0/1:99,0,202:99 chr1 213061460 . T C 24.5 . DP=5;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:57,12,0:21 chr1 213062017 . tttgttgttgttgttgtt tTTGttgttgttgttgttgtt 144 . INDEL;DP=24;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:184,12,0:21 chr1 213068192 . T C 8.61 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:40,9,0:12 chr1 213068233 . C T 150 . DP=13;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,13,0;MQ=58;FQ=-66 GT:PL:GQ 1/1:183,39,0:75 chr1 213068404 . T C 158 . DP=17;VDB=0.0325;AF1=0.5;AC1=1;DP4=0,3,1,10;MQ=55;FQ=16.1;PV4=1,1,1,0.4 GT:PL:GQ 0/1:188,0,43:46 chr1 213068436 . A G 152 . DP=9;VDB=0.0365;AF1=0.5001;AC1=1;DP4=0,2,3,4;MQ=57;FQ=8.65;PV4=0.5,1,1,1 GT:PL:GQ 0/1:182,0,35:38 chr1 213068456 . T A 14.2 . DP=5;VDB=0.0022;AF1=0.5005;AC1=1;DP4=0,1,2,1;MQ=60;FQ=-3.05;PV4=1,0.0076,1,1 GT:PL:GQ 0/1:44,0,27:30 chr1 213068542 . CTGATTG CTGATTGATTG 217 . INDEL;DP=50;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,3,21,6;MQ=59;FQ=217;PV4=0.48,1,0.052,1 GT:PL:GQ 0/1:255,0,255:99 chr1 213068595 . C T 225 . DP=97;VDB=0.0298;AF1=0.5;AC1=1;DP4=34,17,30,15;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 213140362 . G A 17.1 . DP=11;VDB=0.0014;AF1=0.5;AC1=1;DP4=5,1,5,0;MQ=60;FQ=20.1;PV4=1,8.2e-06,1,1 GT:PL:GQ 0/1:47,0,142:50 chr1 213140398 . A C 44 . DP=28;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,5,13,0;MQ=60;FQ=47;PV4=0.044,2.9e-06,1,1 GT:PL:GQ 0/1:74,0,232:77 chr1 213146944 . A G 28 . DP=22;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,11,0,10;MQ=60;FQ=31;PV4=1,2e-10,1,0.43 GT:PL:GQ 0/1:58,0,164:61 chr1 213178340 . G A 72 . DP=14;VDB=0.0019;AF1=0.5;AC1=1;DP4=8,0,5,0;MQ=60;FQ=75;PV4=1,0.11,1,0.29 GT:PL:GQ 0/1:102,0,152:99 chr1 213224719 . T C 68 . DP=8;VDB=0.0236;AF1=0.5;AC1=1;DP4=3,1,4,0;MQ=60;FQ=48;PV4=1,1,1,1 GT:PL:GQ 0/1:98,0,75:78 chr1 213405414 . Ggcaactgaggatgcaactgaggat Ggcaactgaggat 73.5 . INDEL;DP=20;VDB=0.0244;AF1=0.5;AC1=1;DP4=13,0,7,0;MQ=53;FQ=76.5;PV4=1,0.068,6.3e-08,1 GT:PL:GQ 0/1:111,0,255:99 chr1 214478459 . G A 222 . DP=56;VDB=0.0140;AF1=1;AC1=2;DP4=1,0,40,14;MQ=59;FQ=-163;PV4=1,1,1,0.36 GT:PL:GQ 1/1:255,136,0:99 chr1 214492286 . G A 190 . DP=88;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,51;MQ=60;FQ=-280 GT:PL:GQ 1/1:223,253,0:99 chr1 214503489 . T G 210 . DP=61;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,32,27;MQ=60;FQ=-205 GT:PL:GQ 1/1:243,178,0:99 chr1 214504604 . T C 148 . DP=27;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,22;MQ=60;FQ=-108 GT:PL:GQ 1/1:181,81,0:99 chr1 214505640 . A G 44.3 . DP=5;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:77,15,0:27 chr1 214531239 . C T 42.1 . DP=7;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,6,1;MQ=57;FQ=-48 GT:PL:GQ 1/1:75,21,0:39 chr1 214542819 . T C 193 . DP=121;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,76,43;MQ=60;FQ=-282 GT:PL:GQ 1/1:226,255,0:99 chr1 214551276 . G A 93 . DP=25;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,25,0;MQ=60;FQ=-102 GT:PL:GQ 1/1:126,75,0:99 chr1 214564177 . C T 222 . DP=53;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,43,9;MQ=59;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr1 214564191 . A C 222 . DP=80;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,56,18;MQ=59;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr1 214564340 . T C 222 . DP=83;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,62;MQ=59;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr1 214566952 . A G 128 . DP=20;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,17,3;MQ=60;FQ=-87 GT:PL:GQ 1/1:161,60,0:99 chr1 214567013 . CGGGGGGG CGGGGGG 85.5 . INDEL;DP=28;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,11;MQ=60;FQ=-113 GT:PL:GQ 1/1:126,78,0:99 chr1 214571251 . A C 222 . DP=121;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,99,17;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 214638172 . C T 131 . DP=49;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,45;MQ=60;FQ=-171 GT:PL:GQ 1/1:164,144,0:99 chr1 214787130 . G A 152 . DP=33;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,24,7;MQ=60;FQ=-120 GT:PL:GQ 1/1:185,93,0:99 chr1 214813353 . C A 4.77 . DP=14;VDB=0.0116;AF1=0.4999;AC1=1;DP4=6,6,1,1;MQ=60;FQ=6.99;PV4=1,0.44,1,1 GT:PL:GQ 0/1:33,0,255:33 chr1 214814571 . C T 149 . DP=19;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,8,9;MQ=60;FQ=-78 GT:PL:GQ 1/1:182,51,0:99 chr1 214820099 . A G 156 . DP=33;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,12,18;MQ=60;FQ=-117 GT:PL:GQ 1/1:189,90,0:99 chr1 214826810 . CTTTTTTTTTTTTTTT CTTTTTTTTTTTTTT,CTTTTTTTTTTTTT,CTTTTTTTTTTTT 4.41 . INDEL;DP=83;VDB=0.0380;AF1=1;AC1=2;DP4=1,1,25,23;MQ=60;FQ=-138;PV4=1,0.42,1,0.2 GT:PL:GQ 1/1:43,103,0,43,71,35,44,109,41,39:48 chr1 215260152 . A T 4.13 . DP=9;VDB=0.0041;AF1=0.4998;AC1=1;DP4=0,5,0,3;MQ=60;FQ=6.2;PV4=1,0.00036,1,1 GT:PL:GQ 0/1:32,0,115:31 chr1 215368514 . A G 81.5 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:114,12,0:21 chr1 215793834 . G A 222 . DP=57;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,32,18;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr1 215848641 . T C 222 . DP=148;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,76,66;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 215853748 . GTTTTTTTTTTTT GTTTTTTTTTTT 9.92 . INDEL;DP=38;VDB=0.0345;AF1=1;AC1=2;DP4=0,1,2,18;MQ=59;FQ=-84.5;PV4=1,1,0.41,1 GT:PL:GQ 1/1:50,50,0:56 chr1 215956304 . A G 22 . DP=16;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,6,0,8;MQ=60;FQ=25;PV4=0.47,9.1e-08,1,1 GT:PL:GQ 0/1:52,0,148:55 chr1 215960167 . T G 59 . DP=37;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,22,1,12;MQ=59;FQ=62;PV4=1,2.8e-11,1,1 GT:PL:GQ 0/1:89,0,207:92 chr1 216051082 . T C 225 . DP=44;VDB=0.0271;AF1=0.5;AC1=1;DP4=16,1,22,4;MQ=60;FQ=170;PV4=0.63,0.36,1,1 GT:PL:GQ 0/1:255,0,197:99 chr1 216219781 . A G 222 . DP=28;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,21,5;MQ=59;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 216246675 . AGGG AGG 113 . INDEL;DP=28;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,12,1,10;MQ=60;FQ=97.4;PV4=0.48,0.16,1,0.38 GT:PL:GQ 0/1:151,0,132:99 chr1 216258213 . A G 32 . DP=12;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,5,0,7;MQ=60;FQ=35;PV4=1,4.8e-06,1,0.11 GT:PL:GQ 0/1:62,0,110:65 chr1 216270618 . G A 95 . DP=36;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,21,0,10;MQ=59;FQ=98;PV4=0.54,0.3,1,1 GT:PL:GQ 0/1:125,0,255:99 chr1 216348764 . C T 92 . DP=44;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,13,8,16;MQ=60;FQ=95;PV4=1,1.9e-23,1,0.28 GT:PL:GQ 0/1:122,0,255:99 chr1 216390694 . C T 84 . DP=52;VDB=0.0322;AF1=0.5;AC1=1;DP4=27,0,22,2;MQ=60;FQ=87;PV4=0.22,4.4e-27,0.15,0.044 GT:PL:GQ 0/1:114,0,188:99 chr1 216462662 . T A 159 . DP=141;VDB=0.0298;AF1=0.5;AC1=1;DP4=50,23,42,24;MQ=59;FQ=162;PV4=0.59,6.2e-48,1,1 GT:PL:GQ 0/1:189,0,255:99 chr1 216497469 . CCAATCA CCA 173 . INDEL;DP=9;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,0,4,2;MQ=52;FQ=92.5;PV4=0.5,1.2e-06,0.089,1 GT:PL:GQ 0/1:211,0,127:99 chr1 216500830 . G C 43 . DP=22;VDB=0.0025;AF1=0.5;AC1=1;DP4=10,0,12,0;MQ=60;FQ=46;PV4=1,2.7e-20,1,1 GT:PL:GQ 0/1:73,0,158:76 chr1 216538507 . A G 12.3 . DP=6;VDB=0.0098;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=15.1;PV4=1,0.0001,1,0.24 GT:PL:GQ 0/1:42,0,85:44 chr1 216592003 . T C 158 . DP=101;VDB=0.0398;AF1=0.5;AC1=1;DP4=36,23,23,15;MQ=60;FQ=161;PV4=1,1.3e-32,1,0.26 GT:PL:GQ 0/1:188,0,255:99 chr1 216595306 . C T 225 . DP=129;VDB=0.0400;AF1=0.5;AC1=1;DP4=33,38,24,33;MQ=60;FQ=225;PV4=0.72,0.02,0.44,0.059 GT:PL:GQ 0/1:255,0,255:99 chr1 216692669 . C T 222 . DP=27;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,17,9;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr1 217604777 . G A 67 . DP=17;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,6,1,9;MQ=60;FQ=70;PV4=1,8.9e-09,1,0.28 GT:PL:GQ 0/1:97,0,151:99 chr1 217947738 . G A 103 . DP=77;VDB=0.0398;AF1=0.5;AC1=1;DP4=26,15,23,13;MQ=60;FQ=106;PV4=1,2.7e-34,1,0.13 GT:PL:GQ 0/1:133,0,255:99 chr1 219366400 . TGGGGGGGGG TGGGGGGGGGG 6.17 . INDEL;DP=10;VDB=0.0271;AF1=1;AC1=2;DP4=1,0,5,2;MQ=60;FQ=-46.5;PV4=1,1,1,0.35 GT:PL:GQ 1/1:45,12,0:13 chr1 219383848 . ACTTTT ACTTTTTCTTTT 14.4 . INDEL;DP=3;VDB=0.0187;AF1=1;AC1=2;DP4=0,0,2,0;MQ=29;FQ=-40.5 GT:PL:GQ 1/1:53,6,0:10 chr1 219383867 . T C 52.1 . DP=7;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,6,1;MQ=40;FQ=-48 GT:PL:GQ 1/1:85,21,0:39 chr1 219383905 . A G 206 . DP=10;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,6,4;MQ=47;FQ=-57 GT:PL:GQ 1/1:239,30,0:57 chr1 219706327 . A G 150 . DP=30;VDB=0.0140;AF1=0.5;AC1=1;DP4=9,2,17,0;MQ=59;FQ=153;PV4=0.15,1,0.22,1 GT:PL:GQ 0/1:180,0,192:99 chr1 219706428 . T C 225 . DP=149;VDB=0.0400;AF1=0.5;AC1=1;DP4=44,34,48,21;MQ=59;FQ=225;PV4=0.12,6.5e-05,1,0.16 GT:PL:GQ 0/1:255,0,255:99 chr1 219783279 . T A 222 . DP=83;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,27,54;MQ=29;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr1 219783709 . G A 48 . DP=12;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,11,0;MQ=17;FQ=-60 GT:PL:GQ 1/1:81,33,0:63 chr1 220100497 . CAAAAAAAAA CAAAAAAAA 5.08 . INDEL;DP=15;VDB=0.0066;AF1=1;AC1=2;DP4=0,3,2,7;MQ=60;FQ=-37.5;PV4=1,0.015,1,0.19 GT:PL:GQ 1/1:41,3,0:3 chr1 220101133 . C T 160 . DP=59;VDB=0.0393;AF1=0.5;AC1=1;DP4=17,14,15,12;MQ=55;FQ=163;PV4=1,6.4e-13,1,0.058 GT:PL:GQ 0/1:190,0,255:99 chr1 220145371 . T G 92 . DP=11;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:125,33,0:63 chr1 220145637 . A G 82.5 . DP=4;VDB=0.0049;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:115,12,0:21 chr1 220153332 . TAA TAAAA 214 . INDEL;DP=37;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,35,2;MQ=60;FQ=-146 GT:PL:GQ 1/1:255,111,0:99 chr1 220154768 . C T 222 . DP=74;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,47,22;MQ=59;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr1 220156090 . T C 129 . DP=98;VDB=0.0392;AF1=1;AC1=2;DP4=1,2,53,38;MQ=60;FQ=-210;PV4=0.57,3.9e-10,1,0.14 GT:PL:GQ 1/1:162,183,0:99 chr1 220160360 . A G 171 . DP=13;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:204,39,0:75 chr1 220160433 . A G 197 . DP=52;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,45,7;MQ=60;FQ=-184 GT:PL:GQ 1/1:230,157,0:99 chr1 220162195 . T C 65 . DP=3;VDB=0.0208;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:97,9,0:16 chr1 220178717 . TAAA TAAAA 214 . INDEL;DP=19;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,13;MQ=59;FQ=-88.5 GT:PL:GQ 1/1:255,54,0:99 chr1 220192495 . C G 182 . DP=27;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,26;MQ=57;FQ=-105 GT:PL:GQ 1/1:215,78,0:99 chr1 220197545 . C T 166 . DP=13;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:199,36,0:69 chr1 220197625 . G T 222 . DP=76;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,54,16;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr1 220197754 . T C 51 . DP=48;VDB=0.0140;AF1=0.5;AC1=1;DP4=4,25,1,17;MQ=60;FQ=54;PV4=0.64,7.4e-30,1,1 GT:PL:GQ 0/1:81,0,255:84 chr1 220205943 . G A 66 . DP=13;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:99,39,0:75 chr1 220207017 . C T 222 . DP=24;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,18;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 220208154 . C A 74 . DP=9;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:107,27,0:51 chr1 220239448 . T C 141 . DP=67;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,9,49;MQ=60;FQ=-202 GT:PL:GQ 1/1:174,175,0:99 chr1 220240862 . A G 62 . DP=14;VDB=0.0002;AF1=0.5;AC1=1;DP4=1,7,3,3;MQ=58;FQ=65;PV4=0.24,1e-05,1,0.00066 GT:PL:GQ 0/1:92,0,170:95 chr1 220321023 . A G 115 . DP=46;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,21,7,11;MQ=60;FQ=118;PV4=0.35,1.7e-16,1,0.29 GT:PL:GQ 0/1:145,0,255:99 chr1 220331319 . T G 69 . DP=35;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,14,2,16;MQ=60;FQ=72;PV4=0.66,7.3e-18,1,1 GT:PL:GQ 0/1:99,0,253:99 chr1 220332552 . C T 10.4 . DP=6;VDB=0.0133;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=13.2;PV4=1,0.0029,1,0.42 GT:PL:GQ 0/1:40,0,81:42 chr1 220406291 . A G 61 . DP=15;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,5,0,10;MQ=60;FQ=63.9;PV4=1,2e-09,1,1 GT:PL:GQ 0/1:91,0,106:94 chr1 220603310 . tgtgag tg 214 . INDEL;DP=28;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,19,0;MQ=60;FQ=-91.5 GT:PL:GQ 1/1:255,57,0:99 chr1 220607685 . G A 149 . DP=36;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,26,8;MQ=59;FQ=-129 GT:PL:GQ 1/1:182,102,0:99 chr1 220607891 . A G 162 . DP=34;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,28,5;MQ=60;FQ=-126 GT:PL:GQ 1/1:195,99,0:99 chr1 220608142 . C T 55 . DP=14;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,4,0,9;MQ=60;FQ=58;PV4=0.36,9.9e-06,1,1 GT:PL:GQ 0/1:85,0,113:88 chr1 220789236 . C T 222 . DP=21;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,14,6;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr1 220808921 . T C 106 . DP=66;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,26,6,26;MQ=60;FQ=109;PV4=1,3.5e-22,1,1 GT:PL:GQ 0/1:136,0,255:99 chr1 220825523 . A G 206 . DP=29;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,9,2,14;MQ=59;FQ=166;PV4=1,1,1,0.06 GT:PL:GQ 0/1:236,0,193:99 chr1 220970028 . A G 211 . DP=51;VDB=0.0298;AF1=0.5;AC1=1;DP4=21,7,16,4;MQ=60;FQ=214;PV4=0.74,1,1,1 GT:PL:GQ 0/1:241,0,255:99 chr1 220986516 . C G 5.46 . DP=5;VDB=0.0040;AF1=0.4999;AC1=1;DP4=2,0,3,0;MQ=60;FQ=7.71;PV4=1,0.0012,1,1 GT:PL:GQ 0/1:34,0,50:34 chr1 221055463 . G A 151 . DP=90;VDB=0.0365;AF1=0.5;AC1=1;DP4=25,25,12,25;MQ=59;FQ=154;PV4=0.13,4.2e-18,0.049,0.097 GT:PL:GQ 0/1:181,0,255:99 chr1 221057646 . C T 104 . DP=39;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,5,10,8;MQ=60;FQ=107;PV4=0.49,4.3e-09,1,1 GT:PL:GQ 0/1:134,0,253:99 chr1 221057662 . G A 145 . DP=43;VDB=0.0398;AF1=0.5;AC1=1;DP4=17,5,11,10;MQ=60;FQ=148;PV4=0.12,2.3e-06,1,1 GT:PL:GQ 0/1:175,0,255:99 chr1 221507141 . C T 105 . DP=36;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,33,2;MQ=60;FQ=-132 GT:PL:GQ 1/1:138,105,0:99 chr1 221509332 . G A 132 . DP=46;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,8,11,12;MQ=59;FQ=135;PV4=0.38,1.2e-13,0.17,0.45 GT:PL:GQ 0/1:162,0,255:99 chr1 222697088 . G A 158 . DP=102;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,28,24,21;MQ=60;FQ=161;PV4=0.69,5.2e-26,0.14,1 GT:PL:GQ 0/1:188,0,255:99 chr1 222721288 . C T 41 . DP=39;VDB=0.0343;AF1=0.5;AC1=1;DP4=14,12,8,3;MQ=60;FQ=44;PV4=0.47,3.2e-13,1,0.24 GT:PL:GQ 0/1:71,0,255:74 chr1 222734803 . G C 139 . DP=83;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,28,20,19;MQ=60;FQ=142;PV4=0.19,8.2e-37,1,1 GT:PL:GQ 0/1:169,0,255:99 chr1 222736498 . C T 98 . DP=16;VDB=0.0053;AF1=0.5;AC1=1;DP4=8,0,7,0;MQ=60;FQ=101;PV4=1,0.085,1,1 GT:PL:GQ 0/1:128,0,150:99 chr1 222737265 . G T 210 . DP=16;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,1;MQ=60;FQ=-75 GT:PL:GQ 1/1:243,48,0:93 chr1 222737568 . C T 16.1 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:48,9,0:15 chr1 222742676 . T C 80 . DP=12;VDB=0.0393;AF1=0.5;AC1=1;DP4=4,2,5,0;MQ=60;FQ=83;PV4=0.45,1,1,0.18 GT:PL:GQ 0/1:110,0,150:99 chr1 222751034 . T C 94 . DP=46;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,45;MQ=59;FQ=-162 GT:PL:GQ 1/1:127,135,0:99 chr1 222791646 . C T 41 . DP=11;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,3,1,5;MQ=60;FQ=43.5;PV4=1,0.0094,1,1 GT:PL:GQ 0/1:71,0,80:73 chr1 222794455 . T A 145 . DP=46;VDB=0.0400;AF1=0.5;AC1=1;DP4=25,8,11,2;MQ=59;FQ=148;PV4=0.7,0.15,1,0.29 GT:PL:GQ 0/1:175,0,255:99 chr1 222798106 . G A 222 . DP=35;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,14,19;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 222802006 . A G 222 . DP=61;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,38,21;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 222802376 . A G 143 . DP=84;VDB=0.0393;AF1=0.5;AC1=1;DP4=17,23,22,18;MQ=59;FQ=146;PV4=0.37,3.9e-32,1,0.26 GT:PL:GQ 0/1:173,0,255:99 chr1 222802803 . T G 82 . DP=105;VDB=0.0392;AF1=0.5;AC1=1;DP4=38,22,30,10;MQ=60;FQ=85;PV4=0.28,1e-41,1,0.28 GT:PL:GQ 0/1:112,0,255:99 chr1 222802926 . C T 222 . DP=121;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,55,58;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 222803204 . A G 108 . DP=47;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,14,18,7;MQ=59;FQ=111;PV4=0.017,6.7e-16,1,1 GT:PL:GQ 0/1:138,0,255:99 chr1 222805698 . T G 98 . DP=46;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,15,5,21;MQ=60;FQ=101;PV4=0.73,1.2e-19,1,0.35 GT:PL:GQ 0/1:128,0,255:99 chr1 222817670 . C T 89 . DP=13;VDB=0.0019;AF1=0.5;AC1=1;DP4=6,0,7,0;MQ=60;FQ=89.9;PV4=1,0.027,1,0.43 GT:PL:GQ 0/1:119,0,121:99 chr1 222821211 . C T 55 . DP=19;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,10,1,3;MQ=60;FQ=58;PV4=1,1,1,1 GT:PL:GQ 0/1:85,0,255:88 chr1 222823529 . A C 21 . DP=6;VDB=0.0163;AF1=0.5;AC1=1;DP4=4,0,2,0;MQ=60;FQ=24;PV4=1,1,1,1 GT:PL:GQ 0/1:51,0,98:54 chr1 222825403 . G A 222 . DP=12;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,4,6;MQ=60;FQ=-57 GT:PL:GQ 1/1:255,30,0:57 chr1 222825717 . T C 122 . DP=104;VDB=0.0164;AF1=0.5;AC1=1;DP4=15,35,17,36;MQ=60;FQ=125;PV4=0.83,2e-32,1,1 GT:PL:GQ 0/1:152,0,255:99 chr1 222825761 . G A 126 . DP=55;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,42;MQ=60;FQ=-175 GT:PL:GQ 1/1:159,148,0:99 chr1 222826481 . G A 225 . DP=52;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,11,8,16;MQ=60;FQ=225;PV4=0.15,0.13,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 222832010 . A G 49 . DP=32;VDB=0.0099;AF1=0.5;AC1=1;DP4=16,0,16,0;MQ=60;FQ=52;PV4=1,4.1e-15,1,1 GT:PL:GQ 0/1:79,0,177:82 chr1 222833601 . T C 180 . DP=39;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,8,28;MQ=60;FQ=-135 GT:PL:GQ 1/1:213,108,0:99 chr1 222837594 . G A 39 . DP=12;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,6,0,6;MQ=60;FQ=42;PV4=1,2.2e-07,1,0.39 GT:PL:GQ 0/1:69,0,131:72 chr1 222838216 . C T 132 . DP=31;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,18;MQ=60;FQ=-111 GT:PL:GQ 1/1:165,84,0:99 chr1 222846882 . G A 54 . DP=11;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,4,0,7;MQ=57;FQ=52.3;PV4=1,0.0019,1,1 GT:PL:GQ 0/1:84,0,81:82 chr1 222886119 . A G 225 . DP=56;VDB=0.0384;AF1=0.5;AC1=1;DP4=5,19,5,25;MQ=60;FQ=224;PV4=0.74,0.25,1,0.092 GT:PL:GQ 0/1:255,0,254:99 chr1 222919895 . T G 82 . DP=15;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,1,6,2;MQ=60;FQ=85;PV4=1,1e-07,1,0.082 GT:PL:GQ 0/1:112,0,159:99 chr1 222923001 . A G 148 . DP=20;VDB=0.0140;AF1=0.5;AC1=1;DP4=2,10,2,6;MQ=60;FQ=151;PV4=1,1,1,1 GT:PL:GQ 0/1:178,0,211:99 chr1 222923351 . A G 91 . DP=21;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,6,3,7;MQ=60;FQ=94;PV4=1,8.1e-08,1,1 GT:PL:GQ 0/1:121,0,221:99 chr1 223116109 . C T 20 . DP=23;VDB=0.0025;AF1=0.5;AC1=1;DP4=16,0,7,0;MQ=60;FQ=23;PV4=1,5.3e-13,1,1 GT:PL:GQ 0/1:50,0,179:53 chr1 223152868 . G A 140 . DP=9;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:173,27,0:51 chr1 223156382 . C T 133 . DP=25;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,4;MQ=60;FQ=-99 GT:PL:GQ 1/1:166,72,0:99 chr1 223176275 . G A 141 . DP=109;VDB=0.0400;AF1=0.5;AC1=1;DP4=23,36,18,30;MQ=60;FQ=144;PV4=1,6.8e-43,0.44,1 GT:PL:GQ 0/1:171,0,255:99 chr1 223178478 . G A 225 . DP=93;VDB=0.0365;AF1=0.5;AC1=1;DP4=24,26,20,19;MQ=60;FQ=225;PV4=0.83,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 223178561 . A C 182 . DP=111;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,71,34;MQ=60;FQ=-282 GT:PL:GQ 1/1:215,255,0:99 chr1 223283910 . A G 207 . DP=83;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,51,29;MQ=60;FQ=-268 GT:PL:GQ 1/1:240,241,0:99 chr1 223284528 . A G 222 . DP=67;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,23,42;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr1 223397037 . T C 222 . DP=22;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,4,18;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 223532570 . T C 99 . DP=56;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,20,12,17;MQ=60;FQ=102;PV4=0.073,7.5e-24,1,0.49 GT:PL:GQ 0/1:129,0,255:99 chr1 223567803 . G A 57 . DP=26;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,8,4,4;MQ=60;FQ=60;PV4=1,1.1e-06,1,1 GT:PL:GQ 0/1:87,0,255:90 chr1 223712870 . G T 67 . DP=35;VDB=0.0081;AF1=0.5;AC1=1;DP4=3,20,0,8;MQ=59;FQ=70;PV4=0.55,0.21,0.045,0.046 GT:PL:GQ 0/1:97,0,255:99 chr1 223717379 . A C 84 . DP=27;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,24,1;MQ=60;FQ=-102 GT:PL:GQ 1/1:117,75,0:99 chr1 223718764 . C T 108 . DP=22;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,5,14;MQ=60;FQ=-84 GT:PL:GQ 1/1:141,57,0:99 chr1 223727833 . A G 4.61 . DP=3;VDB=0.0225;AF1=1;AC1=2;DP4=0,0,2,0;MQ=27;FQ=-33 GT:PL:GQ 1/1:34,6,0:5 chr1 223727864 . T C 66.1 . DP=7;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,7,0;MQ=28;FQ=-48 GT:PL:GQ 1/1:99,21,0:39 chr1 223799857 . C T 200 . DP=42;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,30,11;MQ=59;FQ=-150 GT:PL:GQ 1/1:233,123,0:99 chr1 223799871 . C T 222 . DP=46;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,31,15;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 223805804 . C T 66 . DP=17;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,2,3,2;MQ=58;FQ=69;PV4=0.56,0.27,0.082,1 GT:PL:GQ 0/1:96,0,189:99 chr1 223807239 . C G 124 . DP=18;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,3,14;MQ=60;FQ=-78 GT:PL:GQ 1/1:157,51,0:99 chr1 223807262 . G A 175 . DP=11;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,1,9;MQ=60;FQ=-57 GT:PL:GQ 1/1:208,30,0:57 chr1 223814682 . A T 165 . DP=26;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,21,4;MQ=60;FQ=-102 GT:PL:GQ 1/1:198,75,0:99 chr1 223815575 . G A 47.5 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:80,12,0:21 chr1 223816322 . A G 194 . DP=40;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,29,8;MQ=59;FQ=-138 GT:PL:GQ 1/1:227,111,0:99 chr1 223816347 . A G 222 . DP=53;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,32,14;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 223830566 . G A 222 . DP=135;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,30,103;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 223841913 . C A 166 . DP=35;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,30,4;MQ=60;FQ=-129 GT:PL:GQ 1/1:199,102,0:99 chr1 223853099 . C A 157 . DP=146;VDB=0.0399;AF1=0.5;AC1=1;DP4=33,36,38,35;MQ=59;FQ=160;PV4=0.74,5.3e-44,0.24,0.36 GT:PL:GQ 0/1:187,0,255:99 chr1 223900408 . C G 222 . DP=34;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,20,10;MQ=59;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 223905532 . G A 196 . DP=58;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,19,35;MQ=60;FQ=-190 GT:PL:GQ 1/1:229,163,0:99 chr1 223934720 . G A 222 . DP=42;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,13;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr1 223938565 . A C 101 . DP=47;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,5,9,6;MQ=59;FQ=104;PV4=0.15,2.1e-07,1,1 GT:PL:GQ 0/1:131,0,255:99 chr1 223951841 . T C 225 . DP=42;VDB=0.0298;AF1=0.5;AC1=1;DP4=14,6,18,4;MQ=60;FQ=225;PV4=0.48,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 223954080 . A C 92 . DP=51;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,6,17,8;MQ=59;FQ=95;PV4=0.75,8e-30,1,1 GT:PL:GQ 0/1:122,0,255:99 chr1 224001963 . G A 225 . DP=67;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,16,12,21;MQ=60;FQ=225;PV4=0.22,0.36,1,0.14 GT:PL:GQ 0/1:255,0,255:99 chr1 224318151 . TTTGTT TTTGTTGTT 214 . INDEL;DP=25;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,12,7;MQ=58;FQ=-91.5 GT:PL:GQ 1/1:255,57,0:99 chr1 224321984 . C T 55 . DP=11;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:88,33,0:63 chr1 224345012 . G A 42.3 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:75,15,0:27 chr1 224380234 . A G 22 . DP=9;VDB=0.0059;AF1=0.5;AC1=1;DP4=1,4,0,4;MQ=60;FQ=25;PV4=1,0.00028,1,0.38 GT:PL:GQ 0/1:52,0,136:55 chr1 224444628 . C T 130 . DP=71;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,55,13;MQ=60;FQ=-232 GT:PL:GQ 1/1:163,205,0:99 chr1 224444901 . G C 12 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr1 224482216 . T C 26.3 . DP=6;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:59,15,0:27 chr1 224490858 . C T 63 . DP=15;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,6,2,5;MQ=60;FQ=66;PV4=1,0.004,1,1 GT:PL:GQ 0/1:93,0,147:96 chr1 224492381 . C T 37 . DP=11;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:70,24,0:45 chr1 224492746 . C T 222 . DP=183;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,77,98;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 224495852 . C T 176 . DP=113;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,59,48;MQ=60;FQ=-282 GT:PL:GQ 1/1:209,255,0:99 chr1 224505570 . TAA TAAAA 214 . INDEL;DP=19;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,6,13;MQ=56;FQ=-91.5 GT:PL:GQ 1/1:255,57,0:99 chr1 224514275 . G A 39.8 . DP=2;VDB=0.0145;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:71,6,0:10 chr1 224517842 . C T 169 . DP=34;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,15,18;MQ=60;FQ=-126 GT:PL:GQ 1/1:202,99,0:99 chr1 224517907 . A T 119 . DP=13;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,12;MQ=60;FQ=-66 GT:PL:GQ 1/1:152,39,0:75 chr1 224544529 . A G 41.1 . DP=6;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:74,18,0:33 chr1 224621368 . G C 67.1 . DP=7;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,5,2;MQ=57;FQ=-48 GT:PL:GQ 1/1:100,21,0:39 chr1 224621538 . G A 49 . DP=14;VDB=0.0053;AF1=0.5;AC1=1;DP4=3,4,3,2;MQ=60;FQ=52;PV4=1,0.084,1,1 GT:PL:GQ 0/1:79,0,143:82 chr1 224805112 . C T 15.6 . DP=6;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:48,12,0:20 chr1 225230608 . C T 202 . DP=28;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,13,15;MQ=60;FQ=-111 GT:PL:GQ 1/1:235,84,0:99 chr1 225237850 . A C 9.31 . DP=2;VDB=0.0182;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr1 225266966 . C G 154 . DP=12;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:187,33,0:63 chr1 225268343 . A G 183 . DP=114;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,41,62;MQ=59;FQ=-282 GT:PL:GQ 1/1:216,255,0:99 chr1 225268346 . G A 215 . DP=116;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,41,62;MQ=59;FQ=-282 GT:PL:GQ 1/1:248,255,0:99 chr1 225270409 . A T 93 . DP=14;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,2,12;MQ=60;FQ=-69 GT:PL:GQ 1/1:126,42,0:81 chr1 225273248 . G T 72 . DP=24;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,22,2;MQ=58;FQ=-99 GT:PL:GQ 1/1:105,72,0:99 chr1 225555512 . C T 214 . DP=49;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,22,23;MQ=60;FQ=-162 GT:PL:GQ 1/1:247,135,0:99 chr1 225555602 . T G 222 . DP=37;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,27;MQ=60;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr1 225562385 . C T 206 . DP=45;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,34,9;MQ=59;FQ=-156 GT:PL:GQ 1/1:239,129,0:99 chr1 225565015 . T C 96.1 . DP=22;VDB=0.0271;AF1=1;AC1=2;DP4=1,0,8,12;MQ=60;FQ=-49;PV4=0.43,4e-06,1,0.35 GT:PL:GQ 1/1:129,22,0:41 chr1 225565073 . C T 222 . DP=17;VDB=0.0322;AF1=1;AC1=2;DP4=1,0,7,8;MQ=60;FQ=-42;PV4=1,1,1,1 GT:PL:GQ 1/1:255,15,0:27 chr1 225569241 . T G 184 . DP=35;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,9,22;MQ=60;FQ=-120 GT:PL:GQ 1/1:217,93,0:99 chr1 225576058 . T C 212 . DP=23;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,22,1;MQ=59;FQ=-96 GT:PL:GQ 1/1:245,69,0:99 chr1 225576311 . A G 160 . DP=20;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,4,16;MQ=60;FQ=-87 GT:PL:GQ 1/1:193,60,0:99 chr1 225577648 . C T 74 . DP=13;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:107,36,0:69 chr1 225601647 . C T 213 . DP=48;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,35,13;MQ=59;FQ=-171 GT:PL:GQ 1/1:246,144,0:99 chr1 225607144 . C T 68.1 . DP=8;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:101,21,0:39 chr1 225609884 . A G 168 . DP=23;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,8,15;MQ=58;FQ=-96 GT:PL:GQ 1/1:201,69,0:99 chr1 225611661 . C T 169 . DP=54;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,40,13;MQ=59;FQ=-187 GT:PL:GQ 1/1:202,160,0:99 chr1 225611845 . C T 67 . DP=16;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,16;MQ=60;FQ=-75 GT:PL:GQ 1/1:100,48,0:93 chr1 225685621 . TAAGAAGA TAAGA 50.2 . INDEL;DP=2;VDB=0.0135;AF1=1;AC1=2;DP4=0,0,1,1;MQ=47;FQ=-40.5 GT:PL:GQ 1/1:89,6,0:10 chr1 225707033 . ATCCAGGcgttcctgccgctccaggcgttcctgccgctccaggcgttcctgccgctccaggcgttcctgccg Atccaggcgttcctgccgctccaggcgttcctgccgctccaggcgttcctgccg 34.2 . INDEL;DP=148;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:73,6,0:10 chr1 226016397 . G A 30 . DP=9;VDB=0.0199;AF1=0.5;AC1=1;DP4=4,1,3,0;MQ=60;FQ=33;PV4=1,0.4,1,1 GT:PL:GQ 0/1:60,0,115:63 chr1 226019653 . G A 120 . DP=52;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,15,11,17;MQ=60;FQ=123;PV4=0.78,4.4e-25,1,1 GT:PL:GQ 0/1:150,0,255:99 chr1 226019774 . G C 46 . DP=8;VDB=0.0098;AF1=0.5;AC1=1;DP4=0,5,0,3;MQ=60;FQ=49;PV4=1,0.4,1,0.37 GT:PL:GQ 0/1:76,0,121:79 chr1 226026406 . A G 225 . DP=56;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,5,19,13;MQ=60;FQ=222;PV4=0.16,1,1,1 GT:PL:GQ 0/1:255,0,250:99 chr1 226027067 . Ggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt GGTgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 41.2 . INDEL;DP=11;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:80,6,0:10 chr1 226032229 . C T 225 . DP=105;VDB=0.0399;AF1=0.5;AC1=1;DP4=27,33,15,30;MQ=60;FQ=225;PV4=0.31,0.39,1,0.45 GT:PL:GQ 0/1:255,0,255:99 chr1 226036309 . A G 209 . DP=72;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,33,33;MQ=60;FQ=-226 GT:PL:GQ 1/1:242,199,0:99 chr1 226044489 . GCCCC GCCCCC 179 . INDEL;DP=25;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,17,7;MQ=60;FQ=-107 GT:PL:GQ 1/1:220,72,0:99 chr1 226044766 . G A 180 . DP=25;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,8,3,10;MQ=60;FQ=178;PV4=1,0.14,1,0.46 GT:PL:GQ 0/1:210,0,207:99 chr1 226050609 . C A 187 . DP=83;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,24,20,24;MQ=60;FQ=190;PV4=0.5,1.9e-24,1,1 GT:PL:GQ 0/1:217,0,255:99 chr1 226053805 . G A 5.46 . DP=11;VDB=0.0164;AF1=0.4999;AC1=1;DP4=1,5,0,4;MQ=60;FQ=7.8;PV4=1,5e-06,1,0.24 GT:PL:GQ 0/1:34,0,146:34 chr1 226054681 . T A 63 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:95,9,0:16 chr1 226054714 . G A 47 . DP=16;VDB=0.0019;AF1=0.5;AC1=1;DP4=5,1,10,0;MQ=60;FQ=50;PV4=0.37,1.9e-11,1,1 GT:PL:GQ 0/1:77,0,132:80 chr1 226055595 . G A 112 . DP=44;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,4,15,6;MQ=60;FQ=115;PV4=0.49,2e-17,1,0.079 GT:PL:GQ 0/1:142,0,255:99 chr1 226125385 . G A 57 . DP=23;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,7,5,4;MQ=60;FQ=60;PV4=1,3.2e-08,0.11,0.028 GT:PL:GQ 0/1:87,0,255:90 chr1 226125543 . GA GAA 82 . INDEL;DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:122,12,0:21 chr1 226252232 . C T 222 . DP=19;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,13;MQ=58;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr1 226253316 . G T 108 . DP=8;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,3,5;MQ=57;FQ=-51 GT:PL:GQ 1/1:141,24,0:45 chr1 226334578 . G A 95 . DP=40;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,36;MQ=60;FQ=-141 GT:PL:GQ 1/1:128,114,0:99 chr1 226334605 . T C 25 . DP=20;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,8,1,9;MQ=60;FQ=28;PV4=1,1.7e-07,1,1 GT:PL:GQ 0/1:55,0,132:58 chr1 226352498 . T G 56 . DP=128;VDB=0.0322;AF1=0.5;AC1=1;DP4=40,18,31,13;MQ=60;FQ=59;PV4=1,3.6e-45,1,1 GT:PL:GQ 0/1:86,0,255:89 chr1 226353521 . T A 102 . DP=106;VDB=0.0392;AF1=0.5;AC1=1;DP4=35,15,39,14;MQ=60;FQ=105;PV4=0.83,2.6e-51,0.17,1 GT:PL:GQ 0/1:132,0,255:99 chr1 226411317 . C T 28 . DP=9;VDB=0.0287;AF1=0.5;AC1=1;DP4=4,1,2,2;MQ=60;FQ=31;PV4=0.52,0.0031,1,1 GT:PL:GQ 0/1:58,0,120:61 chr1 226438449 . T C 11.3 . DP=8;VDB=0.0126;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=14.2;PV4=1,5.4e-05,1,1 GT:PL:GQ 0/1:41,0,106:43 chr1 226474132 . G A 41 . DP=17;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,9,3,4;MQ=60;FQ=44;PV4=0.25,4.3e-09,1,0.22 GT:PL:GQ 0/1:71,0,187:74 chr1 226485327 . ATTTTTT ATTTTTTT 14.6 . INDEL;DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,0,10,1;MQ=60;FQ=10.9;PV4=0.48,1,1,0.28 GT:PL:GQ 0/1:52,0,46:48 chr1 226497256 . G A 183 . DP=76;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,6,31,13;MQ=60;FQ=186;PV4=0.59,5.6e-16,1,0.23 GT:PL:GQ 0/1:213,0,254:99 chr1 226497419 . G A 142 . DP=95;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,40,14,26;MQ=60;FQ=145;PV4=0.5,1.7e-25,1,1 GT:PL:GQ 0/1:172,0,255:99 chr1 226550741 . C T 76 . DP=23;VDB=0.0384;AF1=0.5;AC1=1;DP4=5,3,9,3;MQ=59;FQ=79;PV4=0.64,1.2e-05,0.21,1 GT:PL:GQ 0/1:106,0,156:99 chr1 226550924 . G C 72 . DP=23;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,12,2,3;MQ=60;FQ=75;PV4=1,0.36,1,1 GT:PL:GQ 0/1:102,0,255:99 chr1 226556094 . T C 132 . DP=24;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,20;MQ=60;FQ=-99 GT:PL:GQ 1/1:165,72,0:99 chr1 226566726 . A C 40.8 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:72,6,0:10 chr1 226567008 . C G 225 . DP=39;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,8,11,17;MQ=60;FQ=157;PV4=0.71,0.057,1,1 GT:PL:GQ 0/1:255,0,184:99 chr1 226567172 . A C 83 . DP=16;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,2,4,5;MQ=57;FQ=86;PV4=0.36,7.5e-06,1,0.5 GT:PL:GQ 0/1:113,0,152:99 chr1 226570840 . T C 44.3 . DP=6;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,3,2;MQ=60;FQ=-42 GT:PL:GQ 1/1:77,15,0:27 chr1 226573364 . A G 177 . DP=64;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,20,18,14;MQ=60;FQ=180;PV4=0.21,1.4e-09,1,1 GT:PL:GQ 0/1:207,0,255:99 chr1 226573402 . T C 225 . DP=55;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,20,7,21;MQ=60;FQ=225;PV4=1,0.31,1,0.46 GT:PL:GQ 0/1:255,0,255:99 chr1 226576296 . G A 100 . DP=120;VDB=0.0384;AF1=0.5;AC1=1;DP4=45,24,29,19;MQ=60;FQ=103;PV4=0.7,6.4e-50,1,1 GT:PL:GQ 0/1:130,0,255:99 chr1 226580021 . G T 180 . DP=20;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,7,2,11;MQ=58;FQ=94;PV4=0.52,0.31,0.15,0.47 GT:PL:GQ 0/1:210,0,121:99 chr1 226580093 . C T 65.1 . DP=7;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,5;MQ=60;FQ=-48 GT:PL:GQ 1/1:98,21,0:39 chr1 226589709 . C T 79 . DP=22;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,0,13,1;MQ=60;FQ=81.8;PV4=1,1.2e-09,1,0.32 GT:PL:GQ 0/1:109,0,123:99 chr1 226589833 . T C 126 . DP=45;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,11,7,13;MQ=60;FQ=129;PV4=0.23,1.6e-15,1,1 GT:PL:GQ 0/1:156,0,255:99 chr1 226836590 . A G 133 . DP=60;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,26,5,24;MQ=60;FQ=136;PV4=0.73,1.8e-13,1,1 GT:PL:GQ 0/1:163,0,255:99 chr1 226923505 . G T 222 . DP=97;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,48,46;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 227069677 . T C 177 . DP=57;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,11,14,12;MQ=60;FQ=180;PV4=1,8.3e-13,1,1 GT:PL:GQ 0/1:207,0,255:99 chr1 227073410 . G C 105 . DP=57;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,21,4,24;MQ=60;FQ=108;PV4=0.68,6.2e-16,1,0.072 GT:PL:GQ 0/1:135,0,221:99 chr1 227078955 . T C 182 . DP=20;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,0,9,3;MQ=60;FQ=93;PV4=0.26,0.36,1,0.012 GT:PL:GQ 0/1:212,0,120:99 chr1 227081622 . A G 32 . DP=11;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,1,5,0;MQ=60;FQ=35;PV4=1,2.1e-06,1,1 GT:PL:GQ 0/1:62,0,122:65 chr1 227085462 . T C 157 . DP=136;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,44,28,45;MQ=60;FQ=160;PV4=0.28,1.9e-52,1,1 GT:PL:GQ 0/1:187,0,255:99 chr1 227085646 . C T 4.77 . DP=8;VDB=0.0116;AF1=0.4999;AC1=1;DP4=0,5,0,3;MQ=60;FQ=6.99;PV4=1,3.3e-05,1,1 GT:PL:GQ 0/1:33,0,115:33 chr1 227170543 . C G 86 . DP=18;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,4,7;MQ=60;FQ=-60 GT:PL:GQ 1/1:119,33,0:63 chr1 227170708 . C T 146 . DP=13;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,3,2,7;MQ=60;FQ=56;PV4=1,0.48,1,1 GT:PL:GQ 0/1:176,0,83:86 chr1 227171737 . G T 72 . DP=11;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:105,27,0:51 chr1 227171739 . G T 69 . DP=12;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:102,27,0:51 chr1 227172290 . C T 222 . DP=99;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,38,59;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 227172903 . G A 92 . DP=12;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:125,33,0:63 chr1 227172935 . C G 129 . DP=21;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,16,4;MQ=60;FQ=-87 GT:PL:GQ 1/1:162,60,0:99 chr1 227174145 . T C 140 . DP=65;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,55,5;MQ=59;FQ=-208 GT:PL:GQ 1/1:173,181,0:99 chr1 227174210 . T C 222 . DP=114;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,80,29;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 227181923 . C T 109 . DP=12;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:142,33,0:63 chr1 227182033 . G A 222 . DP=63;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,32,27;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr1 227182575 . A G 222 . DP=71;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,56,14;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr1 227182754 . G A 98 . DP=37;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,37;MQ=60;FQ=-138 GT:PL:GQ 1/1:131,111,0:99 chr1 227204557 . T C 222 . DP=43;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,36,5;MQ=60;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 227210820 . G A 39.5 . DP=4;VDB=0.0041;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:72,12,0:21 chr1 227210888 . A T 116 . DP=19;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,14,5;MQ=60;FQ=-84 GT:PL:GQ 1/1:149,57,0:99 chr1 227213968 . G T 44 . DP=18;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81 GT:PL:GQ 1/1:77,54,0:95 chr1 227216662 . T C 182 . DP=122;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,49,67;MQ=59;FQ=-282 GT:PL:GQ 1/1:215,255,0:99 chr1 227216775 . C T 222 . DP=138;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,73,59;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 227218069 . C CAT 214 . INDEL;DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,14,2;MQ=59;FQ=-82.5 GT:PL:GQ 1/1:255,48,0:93 chr1 227221123 . G A 111 . DP=18;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,6,9;MQ=60;FQ=-72 GT:PL:GQ 1/1:144,45,0:87 chr1 227222515 . GACAAACA GACAAACAAACA 214 . INDEL;DP=71;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,12,48;MQ=57;FQ=-216 GT:PL:GQ 1/1:255,181,0:99 chr1 227239562 . G C 166 . DP=37;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,21,15;MQ=60;FQ=-104;PV4=0.43,8.6e-05,1,0.22 GT:PL:GQ 1/1:199,77,0:99 chr1 227288655 . G A 54.1 . DP=6;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:87,18,0:33 chr1 227330759 . A G 200 . DP=44;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,8,35;MQ=60;FQ=-156 GT:PL:GQ 1/1:233,129,0:99 chr1 227381373 . G T 4.61 . DP=30;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:34,6,0:5 chr1 227387143 . A G 35.8 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:67,6,0:10 chr1 227387361 . A G 204 . DP=11;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,9;MQ=60;FQ=-60 GT:PL:GQ 1/1:237,33,0:63 chr1 227920665 . A G 13.2 . DP=22;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,5,6,1;MQ=59;FQ=16.1;PV4=0.61,2.2e-11,1,0.29 GT:PL:GQ 0/1:43,0,255:46 chr1 227922918 . A C 186 . DP=62;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,7,28,9;MQ=60;FQ=189;PV4=0.77,2.9e-10,1,1 GT:PL:GQ 0/1:216,0,255:99 chr1 227923081 . G A 222 . DP=64;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,13,40;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr1 227935280 . C T 138 . DP=9;VDB=0.0014;AF1=0.5;AC1=1;DP4=2,0,6,1;MQ=60;FQ=17.1;PV4=1,1,1,1 GT:PL:GQ 0/1:168,0,44:47 chr1 227935355 . T C 225 . DP=43;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,9,15,6;MQ=60;FQ=225;PV4=0.52,1,1,0.44 GT:PL:GQ 0/1:255,0,255:99 chr1 227935444 . A G 111 . DP=73;VDB=0.0398;AF1=0.5;AC1=1;DP4=18,22,16,14;MQ=60;FQ=114;PV4=0.63,1.5e-22,1,1 GT:PL:GQ 0/1:141,0,255:99 chr1 227968107 . G A 225 . DP=27;VDB=0.0099;AF1=0.5;AC1=1;DP4=9,2,9,6;MQ=58;FQ=156;PV4=0.39,1,0.11,1 GT:PL:GQ 0/1:255,0,183:99 chr1 228004851 . C T 24 . DP=6;VDB=0.0000;AF1=0.5;AC1=1;DP4=3,0,2,1;MQ=60;FQ=27;PV4=1,0.00048,1,0.35 GT:PL:GQ 0/1:54,0,81:57 chr1 228033197 . A G 103 . DP=11;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:136,30,0:57 chr1 228109471 . C T 225 . DP=83;VDB=0.0298;AF1=0.5;AC1=1;DP4=19,7,40,17;MQ=60;FQ=211;PV4=1,0.11,1,1 GT:PL:GQ 0/1:255,0,238:99 chr1 228113163 . A G 56 . DP=10;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,2,1,4;MQ=60;FQ=34;PV4=1,0.26,1,1 GT:PL:GQ 0/1:86,0,61:64 chr1 228129197 . T C 200 . DP=22;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,4,6,6;MQ=59;FQ=174;PV4=1,0.096,0.2,1 GT:PL:GQ 0/1:230,0,201:99 chr1 228352160 . T C 222 . DP=48;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,35;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 228353651 . G C 27 . DP=10;VDB=0.0053;AF1=0.5;AC1=1;DP4=4,1,5,0;MQ=60;FQ=30;PV4=1,0.0024,1,0.16 GT:PL:GQ 0/1:57,0,120:60 chr1 228391591 . G C 172 . DP=24;VDB=0.0099;AF1=0.5;AC1=1;DP4=8,2,10,3;MQ=60;FQ=164;PV4=1,0.082,1,1 GT:PL:GQ 0/1:202,0,191:99 chr1 228391808 . G T 11.3 . DP=38;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,16,3,7;MQ=59;FQ=14.2;PV4=0.71,4.4e-15,1,1 GT:PL:GQ 0/1:41,0,255:43 chr1 228399482 . C G 29 . DP=3;VDB=0.0199;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:61,9,0:16 chr1 228399766 . T C 221 . DP=23;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,9,14;MQ=60;FQ=-96 GT:PL:GQ 1/1:254,69,0:99 chr1 228400646 . T C 118 . DP=17;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,15;MQ=60;FQ=-78 GT:PL:GQ 1/1:151,51,0:99 chr1 228400653 . A T 155 . DP=13;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,12;MQ=60;FQ=-66 GT:PL:GQ 1/1:188,39,0:75 chr1 228402047 . A G 222 . DP=83;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,23,56;MQ=59;FQ=-243;PV4=0.3,1,1,0.25 GT:PL:GQ 1/1:255,216,0:99 chr1 228402121 . A G 222 . DP=51;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,13,36;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr1 228431095 . A G 222 . DP=39;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,11,28;MQ=58;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 228431930 . C T 222 . DP=70;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,52,13;MQ=59;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr1 228433217 . A G 220 . DP=39;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,14,25;MQ=60;FQ=-144 GT:PL:GQ 1/1:253,117,0:99 chr1 228434395 . T C 222 . DP=61;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,30,30;MQ=59;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr1 228434467 . T C 222 . DP=47;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,31;MQ=59;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr1 228437603 . T C 72 . DP=11;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,8,3;MQ=60;FQ=-60 GT:PL:GQ 1/1:105,33,0:63 chr1 228438045 . G A 31 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,1,2;MQ=52;FQ=-36 GT:PL:GQ 1/1:63,9,0:16 chr1 228444318 . T G,A 76 . DP=12;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,8,3;MQ=60;FQ=-57 GT:PL:GQ 1/1:109,30,0,101,12,98:57 chr1 228444565 . T A 222 . DP=40;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,17,22;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr1 228444741 . C T 22.8 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:54,6,0:10 chr1 228451826 . C T 222 . DP=25;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,14,9;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr1 228456147 . T C 222 . DP=113;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,49,60;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 228461129 . A G 222 . DP=27;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,12,12;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 228461408 . AGGG AGGGG 139 . INDEL;DP=11;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-67.5 GT:PL:GQ 1/1:180,33,0:63 chr1 228464248 . T G 208 . DP=49;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,31,17;MQ=60;FQ=-171 GT:PL:GQ 1/1:241,144,0:99 chr1 228464276 . T C 222 . DP=58;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,31,26;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr1 228464842 . C G 205 . DP=61;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,31,27;MQ=59;FQ=-202 GT:PL:GQ 1/1:238,175,0:99 chr1 228465370 . T G 222 . DP=48;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,24,21;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 228468458 . G A 221 . DP=16;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,2,12;MQ=58;FQ=-69 GT:PL:GQ 1/1:254,42,0:81 chr1 228470995 . G T 205 . DP=27;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,23;MQ=60;FQ=-99 GT:PL:GQ 1/1:238,72,0:99 chr1 228475848 . G A 222 . DP=99;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,31,63;MQ=60;FQ=-282;PV4=0.34,3.9e-05,1,1 GT:PL:GQ 1/1:255,255,0:99 chr1 228480282 . A G 222 . DP=57;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,30,23;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr1 228481382 . C T 52 . DP=35;VDB=0.0042;AF1=0.5;AC1=1;DP4=2,14,0,17;MQ=60;FQ=55;PV4=0.23,7.8e-21,1,1 GT:PL:GQ 0/1:82,0,234:85 chr1 228482010 . C T 222 . DP=136;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,79,52;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 228482285 . T C 6.02 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr1 228492044 . G A 161 . DP=119;VDB=0.0380;AF1=1;AC1=2;DP4=1,1,54,59;MQ=60;FQ=-282;PV4=1,6.8e-11,1,1 GT:PL:GQ 1/1:194,255,0:99 chr1 228494382 . T G 200 . DP=50;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,39;MQ=59;FQ=-159 GT:PL:GQ 1/1:233,132,0:99 chr1 228494790 . G A 212 . DP=33;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,10,21;MQ=60;FQ=-120 GT:PL:GQ 1/1:245,93,0:99 chr1 228495696 . T C 79 . DP=9;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:112,24,0:45 chr1 228497053 . A G 157 . DP=66;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,36,22;MQ=60;FQ=-202 GT:PL:GQ 1/1:190,175,0:99 chr1 228503677 . A G 222 . DP=34;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,26,7;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr1 228503711 . G A 108 . DP=48;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,13,12,7;MQ=60;FQ=111;PV4=0.54,9.2e-16,1,0.49 GT:PL:GQ 0/1:138,0,255:99 chr1 228504472 . T C 222 . DP=32;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,20,11;MQ=59;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 228504670 . C T 107 . DP=6;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:140,18,0:33 chr1 228505668 . C G 222 . DP=41;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,26,11;MQ=59;FQ=-112;PV4=0.32,1,1,0.24 GT:PL:GQ 1/1:255,85,0:99 chr1 228505699 . T C 222 . DP=42;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,24,17;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr1 228509427 . A G 217 . DP=68;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,37,29;MQ=60;FQ=-226 GT:PL:GQ 1/1:250,199,0:99 chr1 228520880 . C T 11.3 . DP=7;VDB=0.0041;AF1=0.5;AC1=1;DP4=3,0,3,1;MQ=60;FQ=14.2;PV4=1,2.3e-07,1,1 GT:PL:GQ 0/1:41,0,80:43 chr1 228520973 . C G 81 . DP=17;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,3,7,2;MQ=59;FQ=84;PV4=0.62,2e-06,1,0.31 GT:PL:GQ 0/1:111,0,174:99 chr1 228523412 . G A 35 . DP=16;VDB=0.0216;AF1=0.5;AC1=1;DP4=10,0,6,0;MQ=60;FQ=38;PV4=1,5.6e-05,1,0.39 GT:PL:GQ 0/1:65,0,159:68 chr1 228523442 . T C 222 . DP=22;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,17,4;MQ=58;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr1 228523447 . T C 148 . DP=25;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,17,4;MQ=55;FQ=-90 GT:PL:GQ 1/1:181,63,0:99 chr1 228523448 . G A 30 . DP=26;VDB=0.0343;AF1=0.5;AC1=1;DP4=7,2,10,2;MQ=57;FQ=33;PV4=1,4.6e-12,0.37,1 GT:PL:GQ 0/1:60,0,164:63 chr1 228523618 . G A 115 . DP=21;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,5,13;MQ=57;FQ=-81 GT:PL:GQ 1/1:148,54,0:99 chr1 228524919 . G A 49 . DP=53;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,20,9,10;MQ=59;FQ=52;PV4=0.56,2.8e-24,0.032,1 GT:PL:GQ 0/1:79,0,255:82 chr1 228524961 . C A 131 . DP=44;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,15,8,11;MQ=60;FQ=134;PV4=0.53,1.3e-07,1,0.22 GT:PL:GQ 0/1:161,0,255:99 chr1 228525627 . C A 73 . DP=37;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,4,10,5;MQ=60;FQ=76;PV4=0.46,6.3e-12,1,1 GT:PL:GQ 0/1:103,0,252:99 chr1 228525898 . C G 161 . DP=14;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,8,5;MQ=60;FQ=-66 GT:PL:GQ 1/1:194,39,0:75 chr1 228526486 . G A 17.1 . DP=9;VDB=0.0182;AF1=0.5;AC1=1;DP4=7,0,2,0;MQ=60;FQ=20.1;PV4=1,1,1,1 GT:PL:GQ 0/1:47,0,146:50 chr1 228526665 . T C 183 . DP=20;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,15;MQ=60;FQ=-87 GT:PL:GQ 1/1:216,60,0:99 chr1 228528412 . G A 225 . DP=87;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,15,32,17;MQ=59;FQ=225;PV4=0.49,0.014,1,0.32 GT:PL:GQ 0/1:255,0,255:99 chr1 228528563 . C G 207 . DP=28;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,22;MQ=60;FQ=-111 GT:PL:GQ 1/1:240,84,0:99 chr1 228529129 . C A 37 . DP=18;VDB=0.0066;AF1=0.5;AC1=1;DP4=5,2,6,2;MQ=60;FQ=40;PV4=1,1.9e-06,1,0.42 GT:PL:GQ 0/1:67,0,156:70 chr1 228538470 . C G 127 . DP=45;VDB=0.0384;AF1=0.5;AC1=1;DP4=21,2,19,0;MQ=60;FQ=130;PV4=0.49,0.0023,1,0.39 GT:PL:GQ 0/1:157,0,243:99 chr1 228543800 . C T 75 . DP=40;VDB=0.0298;AF1=0.5;AC1=1;DP4=17,1,17,2;MQ=59;FQ=78;PV4=1,6.3e-18,0.17,0.17 GT:PL:GQ 0/1:105,0,204:99 chr1 228547256 . G A 200 . DP=21;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,3,8,5;MQ=60;FQ=124;PV4=1,0.15,1,1 GT:PL:GQ 0/1:230,0,151:99 chr1 228548197 . G A 225 . DP=36;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,9,10,11;MQ=60;FQ=212;PV4=0.73,0.15,1,0.28 GT:PL:GQ 0/1:255,0,239:99 chr1 228550426 . C T 4.77 . DP=11;VDB=0.0380;AF1=0.4999;AC1=1;DP4=1,5,0,4;MQ=60;FQ=6.99;PV4=1,4.4e-05,1,1 GT:PL:GQ 0/1:33,0,143:33 chr1 228552571 . T C 131 . DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,7,20,4;MQ=60;FQ=134;PV4=0.3,7e-13,1,1 GT:PL:GQ 0/1:161,0,255:99 chr1 228556403 . C T 107 . DP=50;VDB=0.0190;AF1=0.5;AC1=1;DP4=25,1,19,4;MQ=60;FQ=110;PV4=0.17,2.3e-20,1,1 GT:PL:GQ 0/1:137,0,217:99 chr1 228558892 . C T 97 . DP=38;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,12,4,13;MQ=59;FQ=100;PV4=0.71,1e-07,1,1 GT:PL:GQ 0/1:127,0,255:99 chr1 228559994 . C T 222 . DP=75;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,32,40;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr1 228560139 . A G 179 . DP=20;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,5,14;MQ=60;FQ=-84 GT:PL:GQ 1/1:212,57,0:99 chr1 228560700 . T C 221 . DP=38;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,7,6,13;MQ=60;FQ=223;PV4=0.18,0.05,1,1 GT:PL:GQ 0/1:251,0,255:99 chr1 228564884 . G A 225 . DP=82;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,21,13,36;MQ=59;FQ=225;PV4=1,0.001,1,0.14 GT:PL:GQ 0/1:255,0,255:99 chr1 228565208 . C T 37 . DP=36;VDB=0.0216;AF1=0.5;AC1=1;DP4=19,5,11,0;MQ=59;FQ=40;PV4=0.16,3.7e-10,0.071,0.37 GT:PL:GQ 0/1:67,0,255:70 chr1 228565445 . C A 29 . DP=9;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,3,0,5;MQ=60;FQ=32;PV4=0.44,0.00017,1,0.29 GT:PL:GQ 0/1:59,0,95:62 chr1 228588654 . G A 71 . DP=10;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,1,4,0;MQ=57;FQ=74;PV4=1,1,1,0.17 GT:PL:GQ 0/1:101,0,121:99 chr1 228588680 . A C 158 . DP=15;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,2,7,2;MQ=58;FQ=98;PV4=1,1,1,1 GT:PL:GQ 0/1:188,0,125:99 chr1 228588979 . C G 36 . DP=20;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,9,0,8;MQ=59;FQ=39;PV4=1,3.3e-08,0.14,1 GT:PL:GQ 0/1:66,0,181:69 chr1 228601638 . T C 124 . DP=55;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,19,10,17;MQ=60;FQ=127;PV4=0.56,2.9e-14,0.17,1 GT:PL:GQ 0/1:154,0,255:99 chr1 228602660 . G C 76 . DP=26;VDB=0.0325;AF1=0.5;AC1=1;DP4=10,7,4,4;MQ=60;FQ=79;PV4=1,0.0016,1,0.32 GT:PL:GQ 0/1:106,0,255:99 chr1 228612838 . G T 72 . DP=21;VDB=0.0014;AF1=0.5;AC1=1;DP4=6,4,9,1;MQ=60;FQ=75;PV4=0.3,3.4e-05,1,1 GT:PL:GQ 0/1:102,0,211:99 chr1 228613052 . T C 150 . DP=28;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,16,4,7;MQ=59;FQ=153;PV4=0.062,0.025,0.11,1 GT:PL:GQ 0/1:180,0,202:99 chr1 228645063 . A G 21 . DP=14;VDB=0.0329;AF1=0.5;AC1=1;DP4=10,0,2,2;MQ=60;FQ=24;PV4=0.066,0.00015,1,1 GT:PL:GQ 0/1:51,0,157:54 chr1 228699477 . T C 225 . DP=193;VDB=0.0400;AF1=0.5;AC1=1;DP4=61,41,52,37;MQ=59;FQ=225;PV4=0.88,1,1,0.27 GT:PL:GQ 0/1:255,0,255:99 chr1 229422193 . T C 142 . DP=32;VDB=0.0384;AF1=0.5;AC1=1;DP4=7,5,10,8;MQ=60;FQ=145;PV4=1,9.2e-15,1,0.23 GT:PL:GQ 0/1:172,0,243:99 chr1 229461024 . C T 225 . DP=59;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,13,13,18;MQ=58;FQ=225;PV4=0.6,0.0022,1,0.17 GT:PL:GQ 0/1:255,0,255:99 chr1 229568231 . T G 74.5 . DP=5;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:107,12,0:21 chr1 229568632 . A G 144 . DP=79;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,28,16,11;MQ=59;FQ=147;PV4=0.24,1.9e-14,1,0.43 GT:PL:GQ 0/1:174,0,255:99 chr1 229568637 . C G 108 . DP=79;VDB=0.0400;AF1=0.5;AC1=1;DP4=20,27,17,12;MQ=59;FQ=111;PV4=0.24,1.6e-29,1,0.22 GT:PL:GQ 0/1:138,0,255:99 chr1 229599225 . T C 96 . DP=10;VDB=0.0003;AF1=0.5;AC1=1;DP4=3,1,6,0;MQ=60;FQ=65;PV4=0.4,1,1,1 GT:PL:GQ 0/1:126,0,92:95 chr1 229600336 . A C 11.3 . DP=16;VDB=0.0025;AF1=0.5;AC1=1;DP4=5,0,11,0;MQ=60;FQ=14.2;PV4=1,3.8e-09,1,0.27 GT:PL:GQ 0/1:41,0,98:43 chr1 229602284 . C A 30 . DP=20;VDB=0.0008;AF1=0.5;AC1=1;DP4=11,0,9,0;MQ=59;FQ=33;PV4=1,2.5e-08,1,0.21 GT:PL:GQ 0/1:60,0,163:63 chr1 229606225 . G T 34 . DP=7;VDB=0.0008;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=23.8;PV4=1,0.28,1,1 GT:PL:GQ 0/1:64,0,51:54 chr1 229622162 . A G 100 . DP=131;VDB=0.0398;AF1=0.5;AC1=1;DP4=49,25,33,20;MQ=60;FQ=103;PV4=0.71,6.1e-44,1,0.022 GT:PL:GQ 0/1:130,0,255:99 chr1 229623131 . G C 181 . DP=35;VDB=0.0081;AF1=0.5;AC1=1;DP4=13,4,17,1;MQ=60;FQ=184;PV4=0.18,0.47,1,1 GT:PL:GQ 0/1:211,0,254:99 chr1 229623137 . T C 84 . DP=40;VDB=0.0118;AF1=0.5;AC1=1;DP4=13,5,18,2;MQ=60;FQ=87;PV4=0.22,6.8e-17,1,1 GT:PL:GQ 0/1:114,0,255:99 chr1 229623292 . G A 225 . DP=105;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,38,20,33;MQ=59;FQ=225;PV4=0.3,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 229623338 . T C 113 . DP=74;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,31,3,32;MQ=59;FQ=116;PV4=0.31,1.7e-26,0.033,1 GT:PL:GQ 0/1:143,0,255:99 chr1 229623409 . ATTTGT ATTTGTTTGT 36.5 . INDEL;DP=16;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,8,0,3;MQ=56;FQ=39.5;PV4=1,1,0.0028,1 GT:PL:GQ 0/1:74,0,237:77 chr1 229631734 . T C 225 . DP=35;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,9,4,14;MQ=59;FQ=225;PV4=0.27,0.34,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 229635521 . A G 150 . DP=53;VDB=0.0393;AF1=0.5;AC1=1;DP4=18,8,11,12;MQ=60;FQ=153;PV4=0.15,2.2e-14,1,0.36 GT:PL:GQ 0/1:180,0,255:99 chr1 229637645 . C A 42 . DP=21;VDB=0.0118;AF1=0.5;AC1=1;DP4=12,0,6,1;MQ=60;FQ=45;PV4=0.37,1.4e-09,1,1 GT:PL:GQ 0/1:72,0,173:75 chr1 229637881 . T G 119 . DP=47;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,14,4,26;MQ=59;FQ=122;PV4=0.65,2.3e-23,1,1 GT:PL:GQ 0/1:149,0,176:99 chr1 229663064 . GAGGAAAGGAAAGGAAAG GAGGAAAGGAAAG 214 . INDEL;DP=76;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,35,35;MQ=55;FQ=-246 GT:PL:GQ 1/1:255,211,0:99 chr1 229730452 . G A 225 . DP=101;VDB=0.0345;AF1=0.5;AC1=1;DP4=37,19,30,13;MQ=60;FQ=225;PV4=0.83,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 229738170 . T G 225 . DP=70;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,20,18,6;MQ=60;FQ=225;PV4=0.13,1,0.086,1 GT:PL:GQ 0/1:255,0,255:99 chr1 229738236 . G A 178 . DP=69;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,28,35;MQ=60;FQ=-217 GT:PL:GQ 1/1:211,190,0:99 chr1 229746019 . C T 218 . DP=34;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,14,3,15;MQ=59;FQ=189;PV4=1,1,1,1 GT:PL:GQ 0/1:248,0,216:99 chr1 229750036 . C T 225 . DP=75;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,20,23,15;MQ=60;FQ=225;PV4=0.25,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 229750343 . T G 54 . DP=51;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,30,2,16;MQ=59;FQ=57;PV4=0.61,2e-16,0.34,0.32 GT:PL:GQ 0/1:84,0,246:87 chr1 229772693 . T G 169 . DP=76;VDB=0.0400;AF1=0.5;AC1=1;DP4=21,13,21,18;MQ=60;FQ=172;PV4=0.64,3e-19,1,0.24 GT:PL:GQ 0/1:199,0,255:99 chr1 229781744 . T C 166 . DP=66;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,15,14,18;MQ=60;FQ=169;PV4=0.62,2.1e-22,1,0.19 GT:PL:GQ 0/1:196,0,255:99 chr1 229783236 . T C 191 . DP=38;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,14;MQ=60;FQ=-141 GT:PL:GQ 1/1:224,114,0:99 chr1 229783240 . T C 63 . DP=41;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,10,10,5;MQ=60;FQ=66;PV4=0.75,1.6e-18,1,0.45 GT:PL:GQ 0/1:93,0,255:96 chr1 229790048 . A G 131 . DP=65;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,15,14,22;MQ=60;FQ=134;PV4=0.8,3e-25,0.2,0.23 GT:PL:GQ 0/1:161,0,255:99 chr1 229795070 . T G 3.01 . DP=13;VDB=0.0138;AF1=0.4997;AC1=1;DP4=2,6,0,3;MQ=60;FQ=4.77;PV4=1,0.00011,1,0.0096 GT:PL:GQ 0/1:30,0,189:28 chr1 230313911 . T C 163 . DP=31;VDB=0.0081;AF1=0.5;AC1=1;DP4=16,4,9,2;MQ=60;FQ=166;PV4=1,1,1,1 GT:PL:GQ 0/1:193,0,255:99 chr1 230371883 . G A 158 . DP=22;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,8,5,5;MQ=59;FQ=161;PV4=0.67,0.073,0.14,1 GT:PL:GQ 0/1:188,0,240:99 chr1 230372061 . A G 98 . DP=75;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,23,17,16;MQ=59;FQ=101;PV4=0.49,1.8e-30,0.45,1 GT:PL:GQ 0/1:128,0,255:99 chr1 230386341 . T A 225 . DP=36;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,11,8,10;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 230391234 . C T 103 . DP=11;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,4,0,6;MQ=60;FQ=64;PV4=1,1,1,1 GT:PL:GQ 0/1:133,0,91:94 chr1 230398241 . C T 225 . DP=35;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,4,13,7;MQ=60;FQ=219;PV4=0.72,0.15,1,1 GT:PL:GQ 0/1:255,0,247:99 chr1 230398445 . G A 64 . DP=17;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,2,5,3;MQ=58;FQ=67;PV4=1,0.0026,0.18,1 GT:PL:GQ 0/1:94,0,143:97 chr1 230415025 . A G 180 . DP=73;VDB=0.0399;AF1=0.5;AC1=1;DP4=23,10,22,16;MQ=60;FQ=183;PV4=0.33,3.2e-19,1,0.37 GT:PL:GQ 0/1:210,0,255:99 chr1 230451935 . cat cATat 214 . INDEL;DP=12;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,3;MQ=58;FQ=-70.5 GT:PL:GQ 1/1:255,36,0:69 chr1 230451978 . G A 222 . DP=12;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,5,6;MQ=58;FQ=-60 GT:PL:GQ 1/1:255,33,0:63 chr1 230459433 . GCCCCCCC GCCCCCC 10 . INDEL;DP=9;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:50,18,0:24 chr1 230473103 . A C 30 . DP=29;VDB=0.0053;AF1=0.5;AC1=1;DP4=2,11,0,15;MQ=60;FQ=33;PV4=0.21,1.3e-17,1,1 GT:PL:GQ 0/1:60,0,221:63 chr1 230497940 . G T 85 . DP=37;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,2,13,3;MQ=59;FQ=88;PV4=0.64,5.2e-12,0.14,1 GT:PL:GQ 0/1:115,0,224:99 chr1 230503684 . C T 79 . DP=6;VDB=0.0005;AF1=0.5;AC1=1;DP4=1,1,4,0;MQ=60;FQ=24;PV4=0.33,1,1,1 GT:PL:GQ 0/1:109,0,51:54 chr1 230778491 . G C 153 . DP=46;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,5,39;MQ=60;FQ=-159 GT:PL:GQ 1/1:186,132,0:99 chr1 230795177 . T C 143 . DP=33;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,30,3;MQ=59;FQ=-126 GT:PL:GQ 1/1:176,99,0:99 chr1 230796375 . A C 37 . DP=26;VDB=0.0025;AF1=0.5;AC1=1;DP4=16,0,9,0;MQ=60;FQ=40;PV4=1,3.4e-08,1,1 GT:PL:GQ 0/1:67,0,176:70 chr1 230819295 . ATTCTTCTTCTT ATTCTTCTT 217 . INDEL;DP=53;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,11,17,8;MQ=57;FQ=217;PV4=0.56,0.021,0.44,1 GT:PL:GQ 0/1:255,0,255:99 chr1 230820780 . TAAAA TAAA 85.5 . INDEL;DP=27;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,1,13,2;MQ=60;FQ=63.5;PV4=1,0.41,1,0.37 GT:PL:GQ 0/1:123,0,98:99 chr1 230822607 . G A 97 . DP=35;VDB=0.0118;AF1=0.5;AC1=1;DP4=21,0,11,0;MQ=59;FQ=100;PV4=1,0.2,1,1 GT:PL:GQ 0/1:127,0,181:99 chr1 230829139 . A G 80 . DP=65;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,20,6,27;MQ=59;FQ=83;PV4=0.37,3.1e-37,1,1 GT:PL:GQ 0/1:110,0,255:99 chr1 230840096 . T C 157 . DP=24;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,13,1,10;MQ=60;FQ=143;PV4=0.46,1,1,1 GT:PL:GQ 0/1:187,0,170:99 chr1 230841687 . T C 222 . DP=48;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,36,11;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 230845794 . A G 225 . DP=122;VDB=0.0345;AF1=0.5;AC1=1;DP4=53,14,46,6;MQ=60;FQ=225;PV4=0.22,0.17,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 230883466 . C T 222 . DP=31;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,8,21;MQ=59;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 230883484 . T C 222 . DP=24;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,2,22;MQ=59;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr1 230883499 . T C 156 . DP=18;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,2,15;MQ=59;FQ=-78 GT:PL:GQ 1/1:189,51,0:99 chr1 230898494 . C T 225 . DP=90;VDB=0.0365;AF1=0.5;AC1=1;DP4=28,21,14,25;MQ=59;FQ=225;PV4=0.056,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 230903350 . T C 159 . DP=32;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,5,13,7;MQ=60;FQ=162;PV4=0.72,1.4e-07,1,0.23 GT:PL:GQ 0/1:189,0,213:99 chr1 230904911 . C T 48 . DP=21;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,2,12,1;MQ=60;FQ=51;PV4=0.53,1.7e-10,1,1 GT:PL:GQ 0/1:78,0,163:81 chr1 230914706 . C A 76 . DP=17;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,3,6,3;MQ=60;FQ=79;PV4=1,9.2e-12,1,0.21 GT:PL:GQ 0/1:106,0,199:99 chr1 230914729 . A C 45 . DP=16;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,5,3,3;MQ=60;FQ=48;PV4=1,0.00072,1,0.36 GT:PL:GQ 0/1:75,0,204:78 chr1 230916260 . C T 131 . DP=21;VDB=0.0118;AF1=0.5;AC1=1;DP4=9,5,4,3;MQ=60;FQ=134;PV4=1,1,1,1 GT:PL:GQ 0/1:161,0,255:99 chr1 230923151 . T C 51 . DP=13;VDB=0.0140;AF1=0.5;AC1=1;DP4=4,0,9,0;MQ=60;FQ=52.6;PV4=1,7.3e-08,1,1 GT:PL:GQ 0/1:81,0,85:83 chr1 230923187 . C G 95 . DP=21;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,1,11,2;MQ=60;FQ=98;PV4=1,8.8e-07,1,1 GT:PL:GQ 0/1:125,0,148:99 chr1 230923313 . C T 225 . DP=31;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,9,7,10;MQ=60;FQ=218;PV4=1,0.037,1,1 GT:PL:GQ 0/1:255,0,245:99 chr1 230928351 . C T 20 . DP=12;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,6,0,5;MQ=58;FQ=23;PV4=1,1.3e-06,0.13,1 GT:PL:GQ 0/1:50,0,161:53 chr1 230933898 . C T 115 . DP=36;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,5,11,7;MQ=60;FQ=118;PV4=0.72,1.7e-15,1,0.4 GT:PL:GQ 0/1:145,0,255:99 chr1 230979657 . G A 89 . DP=31;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,7,3,9;MQ=60;FQ=92;PV4=0.072,4.3e-11,1,1 GT:PL:GQ 0/1:119,0,255:99 chr1 231042732 . T A 67 . DP=32;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,18,3,9;MQ=59;FQ=70;PV4=0.34,3.9e-13,0.1,1 GT:PL:GQ 0/1:97,0,238:99 chr1 231047310 . TACA TA 59.5 . INDEL;DP=5;VDB=0.0392;AF1=0.5;AC1=1;DP4=0,2,1,1;MQ=60;FQ=59.9;PV4=1,0.19,1,0.34 GT:PL:GQ 0/1:97,0,98:97 chr1 231060736 . T C 161 . DP=68;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,23,11,23;MQ=59;FQ=164;PV4=1,4.4e-18,0.078,0.13 GT:PL:GQ 0/1:191,0,255:99 chr1 231064611 . G A 78 . DP=5;VDB=0.0059;AF1=0.501;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-4.75;PV4=1,1,1,1 GT:PL:GQ 0/1:108,0,24:27 chr1 231067236 . C T 225 . DP=63;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,24,6,14;MQ=60;FQ=225;PV4=0.42,0.43,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 231067318 . G T 44 . DP=14;VDB=0.0110;AF1=0.5;AC1=1;DP4=1,9,0,4;MQ=60;FQ=47;PV4=1,0.16,1,1 GT:PL:GQ 0/1:74,0,184:77 chr1 231069340 . C T 9.31 . DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr1 231081304 . T G 28 . DP=5;VDB=0.0011;AF1=0.501;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-4.76;PV4=1,0.0047,1,0.3 GT:PL:GQ 0/1:58,0,24:27 chr1 231092180 . G A 225 . DP=44;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,15,7,12;MQ=59;FQ=225;PV4=1,0.33,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr1 231092211 . tgg tGgg 182 . INDEL;DP=43;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,18,2,17;MQ=58;FQ=185;PV4=0.27,1,0.022,1 GT:PL:GQ 0/1:220,0,251:99 chr1 231124055 . T C 225 . DP=38;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,3,14,8;MQ=60;FQ=209;PV4=0.3,0.27,1,1 GT:PL:GQ 0/1:255,0,236:99 chr1 231353589 . A G 99 . DP=26;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,7,5,10;MQ=60;FQ=102;PV4=1,1.3e-13,1,1 GT:PL:GQ 0/1:129,0,205:99 chr1 231359931 . C T 126 . DP=27;VDB=0.0019;AF1=0.5;AC1=1;DP4=17,0,9,1;MQ=60;FQ=129;PV4=0.37,0.1,1,1 GT:PL:GQ 0/1:156,0,179:99 chr1 231362840 . G A 225 . DP=70;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,19,20,14;MQ=60;FQ=225;PV4=0.23,0.028,1,0.058 GT:PL:GQ 0/1:255,0,255:99 chr1 231362923 . G A 200 . DP=33;VDB=0.0164;AF1=0.5;AC1=1;DP4=4,14,3,10;MQ=60;FQ=203;PV4=1,1,1,1 GT:PL:GQ 0/1:230,0,255:99 chr1 231376806 . G C 225 . DP=53;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,21,12,13;MQ=59;FQ=225;PV4=0.08,1,0.48,1 GT:PL:GQ 0/1:255,0,255:99 chr1 231377081 . C T 81 . DP=40;VDB=0.0271;AF1=0.5;AC1=1;DP4=19,3,16,2;MQ=59;FQ=84;PV4=1,5e-15,0.44,1 GT:PL:GQ 0/1:111,0,248:99 chr1 231396212 . A G 149 . DP=37;VDB=0.0066;AF1=0.5;AC1=1;DP4=16,1,18,0;MQ=60;FQ=151;PV4=0.49,1,1,1 GT:PL:GQ 0/1:179,0,185:99 chr1 231398585 . A T 112 . DP=44;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,17,2,22;MQ=59;FQ=115;PV4=1,2.4e-18,0.19,0.49 GT:PL:GQ 0/1:142,0,233:99 chr1 231401024 . TCCCC TCCC 63.5 . INDEL;DP=57;VDB=0.0322;AF1=0.5;AC1=1;DP4=23,4,27,1;MQ=60;FQ=66.5;PV4=0.19,8.4e-27,0.17,0.28 GT:PL:GQ 0/1:101,0,138:99 chr1 231401204 . T C 93 . DP=65;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,26,7,26;MQ=60;FQ=96;PV4=0.75,1.6e-29,1,1 GT:PL:GQ 0/1:123,0,255:99 chr1 231401596 . T C 56 . DP=69;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,23,2,38;MQ=60;FQ=59;PV4=0.21,1.3e-27,1,0.44 GT:PL:GQ 0/1:86,0,253:89 chr1 231401902 . G A 219 . DP=53;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,34,18;MQ=60;FQ=-184 GT:PL:GQ 1/1:252,157,0:99 chr1 231406847 . C A 33 . DP=9;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,4,0,5;MQ=60;FQ=36;PV4=1,0.00011,1,0.45 GT:PL:GQ 0/1:63,0,96:66 chr1 231474294 . A G 172 . DP=73;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,17,10,30;MQ=60;FQ=175;PV4=0.19,3.7e-15,1,1 GT:PL:GQ 0/1:202,0,255:99 chr1 231480507 . A G 35.8 . DP=2;VDB=0.0065;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:67,6,0:10 chr1 231488952 . A T 160 . DP=59;VDB=0.0400;AF1=0.5;AC1=1;DP4=21,8,14,14;MQ=60;FQ=163;PV4=0.11,1.6e-13,1,1 GT:PL:GQ 0/1:190,0,255:99 chr1 231506557 . G A 22 . DP=7;VDB=0.0180;AF1=0.5;AC1=1;DP4=0,5,0,2;MQ=60;FQ=25;PV4=1,0.46,1,0.1 GT:PL:GQ 0/1:52,0,122:55 chr1 231700246 . TTTTTGTTTTGTTTTGTTTT TTTTTGTTTTGTTTT 214 . INDEL;DP=20;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,0,7,1;MQ=59;FQ=216;PV4=0.42,0.03,0.13,1 GT:PL:GQ 0/1:252,0,255:99 chr1 231830295 . G A 192 . DP=92;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,14,23,26;MQ=60;FQ=195;PV4=0.13,4.1e-12,0.19,1 GT:PL:GQ 0/1:222,0,255:99 chr1 231906589 . C T 151 . DP=54;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,6,20,9;MQ=60;FQ=154;PV4=0.77,8.8e-16,1,1 GT:PL:GQ 0/1:181,0,255:99 chr1 231936016 . A G 204 . DP=71;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,27,2,34;MQ=59;FQ=207;PV4=0.14,1,1,1 GT:PL:GQ 0/1:234,0,255:99 chr1 231956086 . A T 191 . DP=17;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,3,8,3;MQ=59;FQ=77;PV4=0.3,1,1,1 GT:PL:GQ 0/1:221,0,104:99 chr1 232535030 . C T 222 . DP=77;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,50;MQ=59;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr1 232564297 . T A 55 . DP=38;VDB=0.0373;AF1=0.5;AC1=1;DP4=11,15,3,8;MQ=59;FQ=58;PV4=0.48,1.9e-13,0.063,0.099 GT:PL:GQ 0/1:85,0,255:88 chr1 232568293 . A G 222 . DP=22;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,3,19;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 232650750 . A G 222 . DP=77;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,44,31;MQ=59;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr1 232650867 . C T 212 . DP=145;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,83,56;MQ=60;FQ=-282 GT:PL:GQ 1/1:245,255,0:99 chr1 232941153 . C T 170 . DP=21;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,10,10;MQ=59;FQ=-87 GT:PL:GQ 1/1:203,60,0:99 chr1 233091463 . T A 77 . DP=20;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,6,3,5;MQ=59;FQ=80;PV4=0.67,0.00012,0.12,1 GT:PL:GQ 0/1:107,0,231:99 chr1 233134086 . C T 164 . DP=68;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,9,19,11;MQ=60;FQ=167;PV4=0.3,8.1e-20,1,1 GT:PL:GQ 0/1:194,0,255:99 chr1 233150270 . T C 38.8 . DP=2;VDB=0.0157;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:70,6,0:10 chr1 233296891 . T C 30 . DP=15;VDB=0.0008;AF1=0.5;AC1=1;DP4=6,1,7,1;MQ=60;FQ=33;PV4=1,6.8e-11,1,0.073 GT:PL:GQ 0/1:60,0,159:63 chr1 233296908 . T G 4.13 . DP=21;VDB=0.0042;AF1=0.4998;AC1=1;DP4=9,2,8,1;MQ=60;FQ=6.2;PV4=1,1.1e-12,1,1 GT:PL:GQ 0/1:32,0,194:31 chr1 233362930 . G A 93 . DP=33;VDB=0.0244;AF1=0.5;AC1=1;DP4=15,2,14,2;MQ=60;FQ=96;PV4=1,1.2e-13,1,1 GT:PL:GQ 0/1:123,0,230:99 chr1 233397752 . T C 9.52 . DP=19;VDB=0.0359;AF1=0.5;AC1=1;DP4=11,3,5,0;MQ=60;FQ=12.3;PV4=0.53,1.2e-07,1,0.32 GT:PL:GQ 0/1:39,0,249:41 chr1 233398670 . C A 29 . DP=28;VDB=0.0014;AF1=0.5;AC1=1;DP4=15,0,13,0;MQ=60;FQ=32;PV4=1,4.6e-17,1,1 GT:PL:GQ 0/1:59,0,178:62 chr1 233398713 . C T 18.1 . DP=69;VDB=0.0271;AF1=0.5;AC1=1;DP4=31,3,31,1;MQ=58;FQ=21;PV4=0.61,2.8e-44,0.0081,1 GT:PL:GQ 0/1:48,0,255:51 chr1 233398918 . AGG AG 77.5 . INDEL;DP=32;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,9,1,12;MQ=49;FQ=80.5;PV4=1,0.0046,0.00024,0.081 GT:PL:GQ 0/1:115,0,146:99 chr1 233398927 . C G 57 . DP=24;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,8,0,12;MQ=44;FQ=60;PV4=1,4.3e-08,0,1 GT:PL:GQ 0/1:87,0,139:90 chr1 233398931 . G GC 9.93 . INDEL;DP=23;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,8,0,7;MQ=48;FQ=12.3;PV4=1,7.7e-06,0,1 GT:PL:GQ 0/1:47,0,57:49 chr1 233431241 . G A 113 . DP=11;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,3,8;MQ=58;FQ=-60 GT:PL:GQ 1/1:146,33,0:63 chr1 233489529 . G A 23 . DP=14;VDB=0.0022;AF1=0.5;AC1=1;DP4=9,1,2,2;MQ=60;FQ=26;PV4=0.18,0.0011,1,1 GT:PL:GQ 0/1:53,0,179:56 chr1 233489707 . G T 113 . DP=36;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,10,7,15;MQ=60;FQ=116;PV4=0.44,1.3e-14,1,1 GT:PL:GQ 0/1:143,0,192:99 chr1 233490536 . AA AATGTCTTGGGGATAATCTGA 117 . INDEL;DP=63;VDB=0.0345;AF1=0.5;AC1=1;DP4=33,3,26,1;MQ=50;FQ=120;PV4=0.63,0.00016,6.3e-29,1 GT:PL:GQ 0/1:155,0,255:99 chr1 233490543 . G A 127 . DP=72;VDB=0.0365;AF1=0.5;AC1=1;DP4=35,5,27,3;MQ=51;FQ=130;PV4=1,0.0082,2e-24,1 GT:PL:GQ 0/1:157,0,255:99 chr1 233759864 . C T 122 . DP=24;VDB=0.0164;AF1=0.5;AC1=1;DP4=5,7,8,4;MQ=60;FQ=125;PV4=0.41,6.5e-09,1,1 GT:PL:GQ 0/1:152,0,249:99 chr1 233759918 . T C 88 . DP=24;VDB=0.0359;AF1=0.5;AC1=1;DP4=6,7,5,6;MQ=60;FQ=91;PV4=1,5.4e-11,1,0.15 GT:PL:GQ 0/1:118,0,255:99 chr1 233785786 . A C 222 . DP=59;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,21,37;MQ=59;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr1 234040742 . A C 115 . DP=15;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,10,3;MQ=60;FQ=-66 GT:PL:GQ 1/1:148,39,0:75 chr1 234040898 . G A 66 . DP=18;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,8,3,5;MQ=60;FQ=69;PV4=0.61,6.3e-07,1,0.19 GT:PL:GQ 0/1:96,0,192:99 chr1 234041317 . C T 168 . DP=77;VDB=0.0298;AF1=0.5;AC1=1;DP4=30,4,30,9;MQ=60;FQ=171;PV4=0.24,5.5e-18,1,0.29 GT:PL:GQ 0/1:198,0,255:99 chr1 234041422 . G C,T 200 . DP=175;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,114,50;MQ=60;FQ=-282 GT:PL:GQ 1/1:233,255,0,229,255,226:99 chr1 234367549 . T C 28 . DP=15;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,9,0,5;MQ=60;FQ=31;PV4=1,2.1e-05,1,0.41 GT:PL:GQ 0/1:58,0,153:61 chr1 234442257 . A T 49 . DP=7;VDB=0.0042;AF1=0.502;AC1=1;DP4=0,1,3,2;MQ=60;FQ=-6.96;PV4=1,0.0011,1,1 GT:PL:GQ 0/1:79,0,21:24 chr1 234452542 . G A 225 . DP=79;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,26,15,28;MQ=60;FQ=225;PV4=0.21,0.00058,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 234509259 . G C 225 . DP=47;VDB=0.0384;AF1=0.5;AC1=1;DP4=14,7,17,7;MQ=60;FQ=225;PV4=1,0.32,1,0.099 GT:PL:GQ 0/1:255,0,255:99 chr1 234510262 . A G 16.1 . DP=7;VDB=0.0041;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=19.1;PV4=1,0.00012,1,0.26 GT:PL:GQ 0/1:46,0,78:49 chr1 234529519 . C T 204 . DP=34;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,10,8,5;MQ=60;FQ=207;PV4=0.73,1,1,1 GT:PL:GQ 0/1:234,0,255:99 chr1 234529540 . G A 187 . DP=33;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,11,6,6;MQ=60;FQ=190;PV4=1,0.31,1,0.46 GT:PL:GQ 0/1:217,0,255:99 chr1 234529552 . C T 104 . DP=31;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,9,6,6;MQ=60;FQ=107;PV4=1,1.1e-09,1,0.099 GT:PL:GQ 0/1:134,0,255:99 chr1 234529570 . G A 95 . DP=31;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,11,4,8;MQ=60;FQ=98;PV4=0.72,1e-06,1,0.43 GT:PL:GQ 0/1:125,0,255:99 chr1 234541622 . G T 42 . DP=18;VDB=0.0081;AF1=0.5;AC1=1;DP4=9,1,8,0;MQ=59;FQ=45;PV4=1,8.2e-08,1,1 GT:PL:GQ 0/1:72,0,180:75 chr1 234546245 . C T 189 . DP=33;VDB=0.0373;AF1=0.5;AC1=1;DP4=10,11,7,5;MQ=59;FQ=192;PV4=0.72,0.21,1,0.0065 GT:PL:GQ 0/1:219,0,255:99 chr1 234561394 . ATAATTTAA ATAA 61.5 . INDEL;DP=7;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,1,1,1;MQ=60;FQ=64.5;PV4=1,0.00015,1,1 GT:PL:GQ 0/1:99,0,225:99 chr1 234601586 . G A 125 . DP=12;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,4,2,5;MQ=56;FQ=96;PV4=1,0.22,0.11,1 GT:PL:GQ 0/1:155,0,123:99 chr1 234603386 . G T 100 . DP=29;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,19,0,9;MQ=60;FQ=103;PV4=1,1,1,1 GT:PL:GQ 0/1:130,0,217:99 chr1 234953834 . A C 13.9 . DP=2;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,1;MQ=26;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr1 234953875 . CAA CAAA 44.7 . INDEL;DP=5;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,4,1;MQ=21;FQ=-49.5 GT:PL:GQ 1/1:85,15,0:27 chr1 235324047 . A C 57 . DP=27;VDB=0.0033;AF1=0.5;AC1=1;DP4=2,11,0,14;MQ=59;FQ=60;PV4=0.22,1.4e-12,1,1 GT:PL:GQ 0/1:87,0,219:90 chr1 235324298 . T C 155 . DP=51;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,10,17,7;MQ=60;FQ=158;PV4=0.56,1.6e-10,1,0.37 GT:PL:GQ 0/1:185,0,255:99 chr1 235324545 . T A 140 . DP=203;VDB=0.0392;AF1=0.5;AC1=1;DP4=33,67,36,60;MQ=60;FQ=143;PV4=0.55,1.4e-61,1,0.49 GT:PL:GQ 0/1:170,0,255:99 chr1 235345346 . C T 131 . DP=61;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,14,15,15;MQ=59;FQ=134;PV4=1,1.1e-14,1,0.41 GT:PL:GQ 0/1:161,0,255:99 chr1 235357303 . A ATG 217 . INDEL;DP=15;VDB=0.0164;AF1=0.5;AC1=1;DP4=3,0,12,0;MQ=60;FQ=66.5;PV4=1,1,1,0.47 GT:PL:GQ 0/1:255,0,101:99 chr1 235383188 . A G 225 . DP=38;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,12,5,18;MQ=59;FQ=196;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,223:99 chr1 235392546 . T C 89 . DP=82;VDB=0.0365;AF1=0.5;AC1=1;DP4=33,10,32,7;MQ=60;FQ=92;PV4=0.6,4.2e-35,1,1 GT:PL:GQ 0/1:119,0,255:99 chr1 235403595 . G T 6.98 . DP=23;VDB=0.0392;AF1=0.4999;AC1=1;DP4=9,4,8,0;MQ=60;FQ=9.53;PV4=0.13,7.6e-16,1,1 GT:PL:GQ 0/1:36,0,255:37 chr1 235543476 . Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt,Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt,Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 55.4 . INDEL;DP=41;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,5;MQ=37;FQ=-43.5 GT:PL:GQ 1/1:111,25,16,92,0,89,92,0,70,89:16 chr1 235594182 . A G 92 . DP=10;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,2,7;MQ=60;FQ=-54 GT:PL:GQ 1/1:125,27,0:51 chr1 235598973 . C T 88 . DP=17;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,1,10,1;MQ=60;FQ=90.7;PV4=1,3.8e-05,1,0.29 GT:PL:GQ 0/1:118,0,129:99 chr1 235600590 . G A 63 . DP=19;VDB=0.0081;AF1=0.5;AC1=1;DP4=11,1,6,1;MQ=60;FQ=66;PV4=1,0.025,1,0.29 GT:PL:GQ 0/1:93,0,179:96 chr1 235600741 . A G 225 . DP=40;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,15,7,14;MQ=60;FQ=206;PV4=0.49,1,1,1 GT:PL:GQ 0/1:255,0,233:99 chr1 235600813 . A C 71 . DP=13;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,7,0,5;MQ=60;FQ=74;PV4=1,0.13,1,0.14 GT:PL:GQ 0/1:101,0,145:99 chr1 235601958 . G T 117 . DP=12;VDB=0.0066;AF1=0.5;AC1=1;DP4=6,0,3,3;MQ=60;FQ=96;PV4=0.18,0.11,1,1 GT:PL:GQ 0/1:147,0,123:99 chr1 235613727 . A G 147 . DP=38;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,12,5,17;MQ=60;FQ=150;PV4=1,1.8e-13,1,1 GT:PL:GQ 0/1:177,0,229:99 chr1 235628908 . G A 222 . DP=20;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,16,4;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr1 235647631 . G T 49 . DP=15;VDB=0.0025;AF1=0.5;AC1=1;DP4=7,0,8,0;MQ=60;FQ=52;PV4=1,1.8e-06,1,0.36 GT:PL:GQ 0/1:79,0,135:82 chr1 235652513 . T C 96 . DP=122;VDB=0.0365;AF1=0.5;AC1=1;DP4=47,12,51,10;MQ=59;FQ=99;PV4=0.64,4.9e-62,0.34,1 GT:PL:GQ 0/1:126,0,255:99 chr1 235715523 . A G 204 . DP=27;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,5,22;MQ=60;FQ=-108 GT:PL:GQ 1/1:237,81,0:99 chr1 235715556 . C G 163 . DP=13;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:196,39,0:75 chr1 235715601 . A G 36.1 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:69,18,0:33 chr1 235747005 . C T 36 . DP=13;VDB=0.0118;AF1=0.5;AC1=1;DP4=5,0,7,0;MQ=58;FQ=39;PV4=1,1.8e-06,1,0.29 GT:PL:GQ 0/1:66,0,105:69 chr1 235747154 . A G 113 . DP=48;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,12,8,17;MQ=59;FQ=116;PV4=0.55,6.2e-21,1,0.016 GT:PL:GQ 0/1:143,0,255:99 chr1 235878431 . Agttgttgttgttgttgttgttgtt AGTTgttgttgttgttgttgttgttgtt 133 . INDEL;DP=5;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,0,4,0;MQ=60;FQ=9.94;PV4=1,1,1,1 GT:PL:GQ 0/1:171,0,44:47 chr1 235918688 . caaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaa cAAAAGaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaa 183 . INDEL;DP=12;VDB=0.0006;AF1=0.5;AC1=1;DP4=5,0,7,0;MQ=60;FQ=151;PV4=1,1,1,0.021 GT:PL:GQ 0/1:221,0,186:99 chr1 236141174 . T C 212 . DP=41;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,16;MQ=59;FQ=-147 GT:PL:GQ 1/1:245,120,0:99 chr1 236142253 . T G 213 . DP=68;VDB=0.0345;AF1=1;AC1=2;DP4=1,0,51,16;MQ=60;FQ=-194;PV4=1,9.4e-05,1,0.22 GT:PL:GQ 1/1:246,167,0:99 chr1 236142565 . T C 93 . DP=24;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,22;MQ=60;FQ=-93 GT:PL:GQ 1/1:126,66,0:99 chr1 236142570 . C G 63 . DP=20;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,20;MQ=60;FQ=-87 GT:PL:GQ 1/1:96,60,0:99 chr1 236143302 . CAAAAAAAA CAAAAAAAAA 59.5 . INDEL;DP=17;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,5,10;MQ=58;FQ=-79.5 GT:PL:GQ 1/1:100,45,0:87 chr1 236144951 . A G 160 . DP=61;VDB=0.0322;AF1=1;AC1=2;DP4=1,0,29,30;MQ=60;FQ=-178;PV4=1,1.7e-09,1,0.27 GT:PL:GQ 1/1:193,151,0:99 chr1 236145145 . T C 16.6 . DP=5;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:49,12,0:20 chr1 236154365 . G T 64 . DP=12;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,9;MQ=60;FQ=-57 GT:PL:GQ 1/1:97,30,0:57 chr1 236157277 . T G 91 . DP=18;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81 GT:PL:GQ 1/1:124,54,0:99 chr1 236205121 . T C 108 . DP=11;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,0,8,1;MQ=58;FQ=13.2;PV4=1,0.15,0.33,0.27 GT:PL:GQ 0/1:138,0,40:43 chr1 236208773 . C T 122 . DP=122;VDB=0.0271;AF1=0.5;AC1=1;DP4=52,19,44,7;MQ=59;FQ=125;PV4=0.12,1.5e-40,1,1 GT:PL:GQ 0/1:152,0,255:99 chr1 236209024 . C G 100 . DP=24;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,7,2,10;MQ=58;FQ=103;PV4=1,1.8e-07,1,1 GT:PL:GQ 0/1:130,0,182:99 chr1 236209081 . G A 8.44 . DP=2;VDB=0.0171;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr1 236212038 . G A 3.54 . DP=5;VDB=0.0092;AF1=0.4998;AC1=1;DP4=3,0,0,2;MQ=60;FQ=5.47;PV4=0.1,0.0069,1,1 GT:PL:GQ 0/1:31,0,86:30 chr1 236393654 . A G 118 . DP=7;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:151,18,0:33 chr1 236413230 . T A 134 . DP=32;VDB=0.0398;AF1=1;AC1=2;DP4=1,1,19,10;MQ=59;FQ=-42;PV4=1,3.2e-07,0.4,0.43 GT:PL:GQ 1/1:167,15,0:27 chr1 236433135 . AT A 214 . INDEL;DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,9,6;MQ=60;FQ=-79.5 GT:PL:GQ 1/1:255,45,0:87 chr1 236444879 . GGCCCGGCCCTGCCCGGCCCT GGCCCGGCCCTGCCCGGCCCTGCCCGGCCCT 7.35 . INDEL;DP=3;VDB=0.0060;AF1=0.5;AC1=1;DP4=0,1,2,0;MQ=42;FQ=9.24;PV4=0.33,1,0,0.24 GT:PL:GQ 0/1:44,0,51:45 chr1 236557771 . G A 182 . DP=48;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,24,17;MQ=59;FQ=-150 GT:PL:GQ 1/1:215,123,0:99 chr1 236557928 . G A 82 . DP=10;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:115,30,0:57 chr1 236572389 . G A 29.5 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:62,12,0:21 chr1 236572475 . A G 123 . DP=33;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,23,9;MQ=56;FQ=-123 GT:PL:GQ 1/1:156,96,0:99 chr1 236590497 . C G 49.3 . DP=5;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:82,15,0:27 chr1 236590563 . C T 113 . DP=10;VDB=0.0343;AF1=1;AC1=2;DP4=0,0,7,3;MQ=60;FQ=-57 GT:PL:GQ 1/1:146,30,0:57 chr1 236590629 . C T 222 . DP=15;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,8,7;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr1 236590659 . G C 222 . DP=15;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,8,7;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr1 236590816 . T G 63.3 . DP=5;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:96,15,0:27 chr1 236645670 . C T 225 . DP=77;VDB=0.0400;AF1=0.5;AC1=1;DP4=18,23,25,11;MQ=60;FQ=225;PV4=0.038,0.24,0.14,0.1 GT:PL:GQ 0/1:255,0,255:99 chr1 236700807 . T A 75 . DP=102;VDB=0.0380;AF1=0.5;AC1=1;DP4=49,17,23,11;MQ=59;FQ=78;PV4=0.49,1.3e-45,1,0.42 GT:PL:GQ 0/1:105,0,255:99 chr1 236700823 . T C 103 . DP=117;VDB=0.0399;AF1=0.5;AC1=1;DP4=51,21,27,15;MQ=59;FQ=106;PV4=0.53,1.4e-47,1,0.16 GT:PL:GQ 0/1:133,0,255:99 chr1 236700857 . C T 225 . DP=130;VDB=0.0365;AF1=0.5;AC1=1;DP4=46,37,29,17;MQ=59;FQ=225;PV4=0.46,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 236700982 . T C 124 . DP=66;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,25,7,25;MQ=59;FQ=127;PV4=0.75,5.6e-26,1,1 GT:PL:GQ 0/1:154,0,255:99 chr1 236702374 . G A 42 . DP=10;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,3,3,2;MQ=53;FQ=45;PV4=1,3.3e-05,0.02,0.12 GT:PL:GQ 0/1:72,0,139:75 chr1 236706352 . A C 101 . DP=76;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,34,8,27;MQ=60;FQ=104;PV4=0.55,3e-31,1,0.43 GT:PL:GQ 0/1:131,0,255:99 chr1 236706371 . A G 225 . DP=57;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,27,4,22;MQ=59;FQ=225;PV4=0.69,0.047,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 236706425 . G A 26 . DP=13;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,5,0,8;MQ=60;FQ=29;PV4=1,1.1e-07,1,1 GT:PL:GQ 0/1:56,0,105:59 chr1 236706780 . C T 75 . DP=27;VDB=0.0190;AF1=0.5;AC1=1;DP4=13,4,7,3;MQ=60;FQ=78;PV4=1,1.8e-09,1,1 GT:PL:GQ 0/1:105,0,255:99 chr1 236706862 . G C 89 . DP=38;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,11,8,7;MQ=60;FQ=92;PV4=1,1.7e-12,1,1 GT:PL:GQ 0/1:119,0,255:99 chr1 236707007 . C T 73 . DP=13;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,4,2,5;MQ=60;FQ=76;PV4=1,0.0011,1,0.33 GT:PL:GQ 0/1:103,0,137:99 chr1 236707036 . A T 23 . DP=6;VDB=0.0126;AF1=0.5;AC1=1;DP4=1,1,0,4;MQ=60;FQ=25.2;PV4=0.33,0.00023,1,0.49 GT:PL:GQ 0/1:53,0,60:55 chr1 236707045 . C T 57 . DP=6;VDB=0.0126;AF1=0.5;AC1=1;DP4=1,1,0,3;MQ=60;FQ=31;PV4=0.4,1,1,1 GT:PL:GQ 0/1:87,0,58:61 chr1 236708224 . A C 156 . DP=49;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,15,12,15;MQ=60;FQ=159;PV4=0.23,4.3e-10,0.2,1 GT:PL:GQ 0/1:186,0,255:99 chr1 236708316 . A G 23 . DP=13;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,5,0,8;MQ=58;FQ=26;PV4=1,1.5e-10,0.23,0.43 GT:PL:GQ 0/1:53,0,114:56 chr1 236711297 . A T 19.1 . DP=5;VDB=0.0143;AF1=0.501;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-4.76;PV4=1,0.0036,1,0.4 GT:PL:GQ 0/1:49,0,24:27 chr1 236711323 . T C 29 . DP=7;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=26.6;PV4=1,4.8e-05,1,1 GT:PL:GQ 0/1:59,0,55:57 chr1 236711586 . G A 70 . DP=20;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,6,1,12;MQ=59;FQ=73;PV4=1,6.6e-12,1,0.25 GT:PL:GQ 0/1:100,0,144:99 chr1 236716741 . G A 33 . DP=8;VDB=0.0000;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=60;FQ=35;PV4=1,0.00027,1,1 GT:PL:GQ 0/1:63,0,69:65 chr1 236716959 . C T 143 . DP=46;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,15,8,17;MQ=60;FQ=146;PV4=0.51,1.3e-12,1,0.37 GT:PL:GQ 0/1:173,0,255:99 chr1 236717926 . T C 110 . DP=58;VDB=0.0244;AF1=0.5;AC1=1;DP4=8,21,12,17;MQ=60;FQ=113;PV4=0.41,3.8e-25,1,1 GT:PL:GQ 0/1:140,0,255:99 chr1 236718524 . G C 20.1 . DP=5;VDB=0.0011;AF1=0.5032;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-8.63;PV4=1,0.1,1,1 GT:PL:GQ 0/1:50,0,19:22 chr1 236718561 . G A 51 . DP=16;VDB=0.0099;AF1=0.5;AC1=1;DP4=4,1,11,0;MQ=60;FQ=54;PV4=0.31,1.4e-06,1,1 GT:PL:GQ 0/1:81,0,107:84 chr1 236718620 . T C 126 . DP=49;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,6,22,11;MQ=60;FQ=129;PV4=0.75,2.8e-21,1,1 GT:PL:GQ 0/1:156,0,225:99 chr1 236719135 . T C 87 . DP=74;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,9,34,4;MQ=60;FQ=90;PV4=0.13,2.6e-32,1,1 GT:PL:GQ 0/1:117,0,255:99 chr1 236719193 . A G 225 . DP=100;VDB=0.0345;AF1=0.5;AC1=1;DP4=31,21,28,17;MQ=60;FQ=225;PV4=0.84,1,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr1 236719259 . G A 89 . DP=126;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,43,22,32;MQ=60;FQ=92;PV4=0.71,1e-51,1,1 GT:PL:GQ 0/1:119,0,255:99 chr1 236720761 . T C 26 . DP=11;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,4,0,6;MQ=60;FQ=29;PV4=0.45,4.6e-05,1,0.15 GT:PL:GQ 0/1:56,0,130:59 chr1 236721610 . G A 24 . DP=36;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,3,12,0;MQ=60;FQ=27;PV4=0.54,1.4e-10,1,1 GT:PL:GQ 0/1:54,0,253:57 chr1 236721660 . T C 128 . DP=83;VDB=0.0244;AF1=0.5;AC1=1;DP4=39,11,21,9;MQ=59;FQ=131;PV4=0.44,1.6e-25,0.36,0.36 GT:PL:GQ 0/1:158,0,255:99 chr1 236721731 . T C 222 . DP=147;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,81,60;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 236722182 . A T 3.98 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr1 236724504 . G A 54 . DP=30;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,3,8,5;MQ=58;FQ=57;PV4=0.41,4.9e-13,0.44,0.43 GT:PL:GQ 0/1:84,0,235:87 chr1 236724605 . G T 105 . DP=38;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,11,10,6;MQ=60;FQ=108;PV4=0.51,1.7e-10,1,1 GT:PL:GQ 0/1:135,0,255:99 chr1 236724715 . T G 132 . DP=18;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,9,1,8;MQ=60;FQ=124;PV4=1,0.24,1,0.052 GT:PL:GQ 0/1:162,0,151:99 chr1 236729867 . C T 17.1 . DP=26;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,2,11,0;MQ=60;FQ=20.1;PV4=0.49,1.9e-12,1,1 GT:PL:GQ 0/1:47,0,222:50 chr1 236729956 . T C 225 . DP=62;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,17,13,14;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 236735939 . T C 123 . DP=77;VDB=0.0322;AF1=0.5;AC1=1;DP4=28,13,25,10;MQ=59;FQ=126;PV4=0.81,9.3e-38,0.24,1 GT:PL:GQ 0/1:153,0,255:99 chr1 236739416 . C T 137 . DP=30;VDB=0.0140;AF1=0.5;AC1=1;DP4=14,1,15,0;MQ=59;FQ=140;PV4=1,0.26,0.16,0.46 GT:PL:GQ 0/1:167,0,202:99 chr1 236740039 . G C 124 . DP=15;VDB=0.0118;AF1=0.5;AC1=1;DP4=5,1,5,2;MQ=60;FQ=109;PV4=1,0.12,1,1 GT:PL:GQ 0/1:154,0,136:99 chr1 236744712 . C A 56 . DP=22;VDB=0.0011;AF1=0.5;AC1=1;DP4=1,7,0,14;MQ=60;FQ=59;PV4=0.36,4.3e-07,1,0.39 GT:PL:GQ 0/1:86,0,137:89 chr1 236746275 . G C 225 . DP=57;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,18,7,18;MQ=60;FQ=225;PV4=0.4,0.39,0.14,0.21 GT:PL:GQ 0/1:255,0,255:99 chr1 236746443 . C T 76 . DP=22;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,10,2,7;MQ=60;FQ=79;PV4=1,3.1e-08,1,1 GT:PL:GQ 0/1:106,0,232:99 chr1 236748505 . T C 178 . DP=168;VDB=0.0345;AF1=0.5;AC1=1;DP4=22,49,34,63;MQ=60;FQ=181;PV4=0.62,1.3e-53,0.11,1 GT:PL:GQ 0/1:208,0,255:99 chr1 236748570 . T C 30 . DP=83;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,43,4,26;MQ=60;FQ=33;PV4=1,1.4e-29,1,1 GT:PL:GQ 0/1:60,0,255:63 chr1 236748630 . C T 122 . DP=17;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,6,0,9;MQ=60;FQ=76;PV4=1,1,1,1 GT:PL:GQ 0/1:152,0,103:99 chr1 236748636 . G A 44 . DP=12;VDB=0.0001;AF1=0.5;AC1=1;DP4=0,3,0,8;MQ=60;FQ=30.9;PV4=1,3.5e-05,1,1 GT:PL:GQ 0/1:74,0,58:61 chr1 236749649 . T C 225 . DP=33;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,6,12,4;MQ=60;FQ=225;PV4=0.46,1,1,0.5 GT:PL:GQ 0/1:255,0,255:99 chr1 236751519 . GA G 39.5 . INDEL;DP=7;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=41.7;PV4=1,0.00091,1,1 GT:PL:GQ 0/1:77,0,84:79 chr1 236755170 . G T 225 . DP=47;VDB=0.0244;AF1=0.5;AC1=1;DP4=19,4,16,5;MQ=60;FQ=225;PV4=0.72,0.14,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 236755427 . A G 31 . DP=17;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,6,0,10;MQ=60;FQ=34;PV4=1,6.6e-06,1,1 GT:PL:GQ 0/1:61,0,105:64 chr1 236755690 . G A 57 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:89,9,0:16 chr1 236755814 . G A 112 . DP=29;VDB=0.0359;AF1=0.5;AC1=1;DP4=12,8,2,5;MQ=60;FQ=115;PV4=0.21,1,1,1 GT:PL:GQ 0/1:142,0,255:99 chr1 236755837 . C T 48 . DP=28;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,12,3,5;MQ=60;FQ=51;PV4=1,1.5e-06,1,1 GT:PL:GQ 0/1:78,0,255:81 chr1 236757200 . A G 6.2 . DP=3;VDB=0.0194;AF1=0.5001;AC1=1;DP4=1,0,2,0;MQ=60;FQ=4.93;PV4=1,0.032,1,0.032 GT:PL:GQ 0/1:35,0,32:33 chr1 236757229 . G A 120 . DP=11;VDB=0.0053;AF1=0.5;AC1=1;DP4=3,0,8,0;MQ=60;FQ=43;PV4=1,0.22,1,0.28 GT:PL:GQ 0/1:150,0,70:73 chr1 236758887 . T C 225 . DP=84;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,23,16,21;MQ=59;FQ=225;PV4=0.82,0.085,0.45,1 GT:PL:GQ 0/1:255,0,255:99 chr1 236759060 . T C 57 . DP=11;VDB=0.0157;AF1=0.5;AC1=1;DP4=4,0,4,2;MQ=60;FQ=54.6;PV4=0.47,0.026,1,0.19 GT:PL:GQ 0/1:87,0,83:85 chr1 236763031 . C T 89 . DP=10;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,4,0,6;MQ=60;FQ=63;PV4=1,0.31,1,0.27 GT:PL:GQ 0/1:119,0,90:93 chr1 236767178 . AGGGG AGGG 85.5 . INDEL;DP=29;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,2,13,2;MQ=59;FQ=72.4;PV4=1,0.17,0.2,0.094 GT:PL:GQ 0/1:123,0,107:99 chr1 236767330 . A G 134 . DP=36;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,10,6,12;MQ=59;FQ=137;PV4=0.73,4.3e-12,1,0.07 GT:PL:GQ 0/1:164,0,255:99 chr1 236882110 . G A 87 . DP=22;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,18,3;MQ=59;FQ=-90 GT:PL:GQ 1/1:120,63,0:99 chr1 236882303 . T C 173 . DP=19;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,4,14;MQ=59;FQ=-81 GT:PL:GQ 1/1:206,54,0:99 chr1 236883421 . C T 222 . DP=47;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,31,16;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr1 236883564 . G A 222 . DP=23;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,1,21;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr1 236894647 . G A 62 . DP=75;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,28,7,23;MQ=59;FQ=65;PV4=0.59,1.5e-31,1,0.32 GT:PL:GQ 0/1:92,0,255:95 chr1 236897633 . A G 91 . DP=39;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,25,4;MQ=60;FQ=-114 GT:PL:GQ 1/1:124,87,0:99 chr1 236899042 . G A 147 . DP=84;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,18,22,20;MQ=60;FQ=150;PV4=0.83,6.1e-29,1,1 GT:PL:GQ 0/1:177,0,255:99 chr1 236899899 . TCCCCC TCCCC 106 . INDEL;DP=56;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,17,9,20;MQ=60;FQ=66.5;PV4=0.52,2.4e-21,0.2,1 GT:PL:GQ 0/1:144,0,101:99 chr1 236902594 . C G 140 . DP=63;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,8,25,9;MQ=59;FQ=143;PV4=0.78,1.1e-17,1,1 GT:PL:GQ 0/1:170,0,255:99 chr1 236910863 . T C 67 . DP=3;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:99,9,0:16 chr1 236911137 . A G 163 . DP=35;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,19,2,11;MQ=60;FQ=166;PV4=1,1,1,0.11 GT:PL:GQ 0/1:193,0,252:99 chr1 236912597 . A G 210 . DP=39;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,14,2,20;MQ=60;FQ=212;PV4=0.64,0.096,1,0.42 GT:PL:GQ 0/1:240,0,245:99 chr1 236923197 . C T 18.1 . DP=9;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,4,0,5;MQ=60;FQ=21;PV4=1,3.9e-05,1,0.41 GT:PL:GQ 0/1:48,0,94:51 chr1 236924506 . A G 203 . DP=71;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,54;MQ=60;FQ=-235 GT:PL:GQ 1/1:236,208,0:99 chr1 236925844 . G A 115 . DP=43;VDB=0.0398;AF1=0.5;AC1=1;DP4=10,12,9,9;MQ=60;FQ=118;PV4=1,3.9e-13,1,0.35 GT:PL:GQ 0/1:145,0,255:99 chr1 236972186 . A G 191 . DP=33;VDB=0.0164;AF1=0.5;AC1=1;DP4=4,15,2,12;MQ=60;FQ=194;PV4=1,1,1,1 GT:PL:GQ 0/1:221,0,255:99 chr1 237038161 . T C 222 . DP=31;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,7,24;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 237516073 . T C 26 . DP=6;VDB=0.0188;AF1=0.5;AC1=1;DP4=3,1,2,0;MQ=60;FQ=29;PV4=1,1,1,1 GT:PL:GQ 0/1:56,0,108:59 chr1 237540615 . A C 225 . DP=69;VDB=0.0392;AF1=0.5;AC1=1;DP4=30,6,22,8;MQ=59;FQ=225;PV4=0.38,0.024,0.45,0.42 GT:PL:GQ 0/1:255,0,255:99 chr1 237551376 . T A 30 . DP=22;VDB=0.0343;AF1=0.5;AC1=1;DP4=7,4,8,1;MQ=60;FQ=33;PV4=0.32,1.7e-09,1,0.13 GT:PL:GQ 0/1:60,0,233:63 chr1 237586384 . T C 111 . DP=107;VDB=0.0271;AF1=0.5;AC1=1;DP4=33,17,41,16;MQ=60;FQ=114;PV4=0.54,7.6e-46,1,1 GT:PL:GQ 0/1:141,0,255:99 chr1 237617757 . C T 157 . DP=93;VDB=0.0345;AF1=0.5;AC1=1;DP4=35,17,29,10;MQ=59;FQ=160;PV4=0.5,3e-27,0.42,1 GT:PL:GQ 0/1:187,0,255:99 chr1 237655173 . A T 183 . DP=17;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,3,2,8;MQ=60;FQ=136;PV4=0.16,1,1,0.33 GT:PL:GQ 0/1:213,0,163:99 chr1 237670140 . A G 222 . DP=46;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,14,31;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 237711644 . T C 60 . DP=4;VDB=0.0095;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:92,9,0:16 chr1 237711797 . A G 222 . DP=55;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,32,22;MQ=59;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr1 237730124 . A G 222 . DP=15;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,2,13;MQ=57;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr1 237732395 . G A 3.04 . DP=3;VDB=0.0194;AF1=0.5048;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-10.6;PV4=1,0.3,1,1 GT:PL:GQ 0/1:30,0,17:23 chr1 237794603 . A G 28.5 . DP=6;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:61,12,0:21 chr1 237801770 . T C 222 . DP=96;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,29,64;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 237802559 . T C 222 . DP=25;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,5,18;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr1 237862164 . G C 100 . DP=10;VDB=0.0140;AF1=0.5;AC1=1;DP4=3,0,7,0;MQ=60;FQ=38;PV4=1,0.39,1,0.44 GT:PL:GQ 0/1:130,0,65:68 chr1 237863439 . G A 4.77 . DP=10;VDB=0.0143;AF1=0.4999;AC1=1;DP4=5,1,4,0;MQ=58;FQ=6.99;PV4=1,8.1e-05,0.12,0.056 GT:PL:GQ 0/1:33,0,143:33 chr1 237863718 . T G,C 211 . DP=41;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,13,26;MQ=59;FQ=-141 GT:PL:GQ 1/1:244,114,0,239,93,236:99 chr1 237865203 . C T 135 . DP=13;VDB=0.0042;AF1=1;AC1=2;DP4=1,0,12,0;MQ=58;FQ=-36;PV4=1,1,0.39,0.31 GT:PL:GQ 1/1:167,9,0:16 chr1 237881770 . C T 206 . DP=33;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,17,14;MQ=59;FQ=-120 GT:PL:GQ 1/1:239,93,0:99 chr1 237890437 . C T 222 . DP=72;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,34,35;MQ=60;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr1 237893674 . C T 222 . DP=75;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,31,41;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr1 237923053 . C T 225 . DP=78;VDB=0.0345;AF1=0.5;AC1=1;DP4=30,7,30,10;MQ=60;FQ=225;PV4=0.59,0.051,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr1 237946964 . T C 23 . DP=39;VDB=0.0190;AF1=0.5;AC1=1;DP4=17,3,18,1;MQ=59;FQ=26;PV4=0.6,3.8e-24,0.16,1 GT:PL:GQ 0/1:53,0,255:56 chr1 237951451 . A G 99 . DP=43;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,23,2,18;MQ=59;FQ=102;PV4=0.21,1.2e-14,0.14,0.37 GT:PL:GQ 0/1:129,0,186:99 chr1 237955649 . Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgt Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgt,Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgt 106 . INDEL;DP=16;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:166,29,20,143,0,140:16 chr1 237993724 . C T 45 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:77,9,0:16 chr1 238045995 . T C 164 . DP=43;VDB=0.0359;AF1=0.5;AC1=1;DP4=12,5,12,11;MQ=60;FQ=167;PV4=0.33,3.5e-14,1,1 GT:PL:GQ 0/1:194,0,255:99 chr1 238051933 . C T 19.1 . DP=5;VDB=0.0080;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=15.2;PV4=1,0.019,1,0.45 GT:PL:GQ 0/1:49,0,43:45 chr1 238053524 . T C 44 . DP=9;VDB=0.0156;AF1=0.5;AC1=1;DP4=1,5,0,3;MQ=60;FQ=47;PV4=1,0.47,1,0.43 GT:PL:GQ 0/1:74,0,155:77 chr1 240255568 . gggcggcggcggcggcgg gggcggcggcggcgg 214 . INDEL;DP=12;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,9,1;MQ=55;FQ=-64.5 GT:PL:GQ 1/1:255,30,0:57 chr1 240256822 . C A 128 . DP=15;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:161,45,0:87 chr1 240341268 . A G 225 . DP=47;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,10,17,5;MQ=59;FQ=225;PV4=0.22,1,0.48,1 GT:PL:GQ 0/1:255,0,255:99 chr1 240341423 . G T 83 . DP=24;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,16,0,8;MQ=59;FQ=86;PV4=1,0.0004,1,0.31 GT:PL:GQ 0/1:113,0,183:99 chr1 240351628 . T C 209 . DP=75;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,63;MQ=60;FQ=-253 GT:PL:GQ 1/1:242,226,0:99 chr1 240370629 . C G 179 . DP=217;VDB=0.0399;AF1=0.5;AC1=1;DP4=54,59,51,43;MQ=60;FQ=182;PV4=0.4,4.3e-46,0.45,1 GT:PL:GQ 0/1:209,0,255:99 chr1 240371085 . A T 22.8 . DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,0,2;MQ=47;FQ=-33 GT:PL:GQ 1/1:54,6,0:10 chr1 240408789 . G A 225 . DP=39;VDB=0.0359;AF1=0.5;AC1=1;DP4=7,5,14,11;MQ=59;FQ=186;PV4=1,0.15,0.25,0.0039 GT:PL:GQ 0/1:255,0,213:99 chr1 240421383 . G A 32 . DP=18;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,7,1,10;MQ=60;FQ=35;PV4=1,4.8e-12,1,1 GT:PL:GQ 0/1:62,0,132:65 chr1 240448434 . G T 65 . DP=32;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,4,11,3;MQ=60;FQ=68;PV4=1,5.9e-16,1,1 GT:PL:GQ 0/1:95,0,255:98 chr1 240601269 . A G 212 . DP=29;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,27,1;MQ=60;FQ=-111 GT:PL:GQ 1/1:245,84,0:99 chr1 240637571 . A G 225 . DP=87;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,36,13,30;MQ=60;FQ=225;PV4=0.22,0.098,1,0.47 GT:PL:GQ 0/1:255,0,255:99 chr1 240643167 . A C 8.44 . DP=2;VDB=0.0167;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr1 240643184 . C T 4.61 . DP=2;VDB=0.0167;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:34,6,0:5 chr1 240643435 . A T 62 . DP=30;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,13,1,10;MQ=60;FQ=65;PV4=0.62,0.00094,1,1 GT:PL:GQ 0/1:92,0,232:95 chr1 240656824 . C A 56 . DP=16;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,6,0,10;MQ=60;FQ=59;PV4=1,5.1e-08,1,0.43 GT:PL:GQ 0/1:86,0,114:89 chr1 240975213 . T C 161 . DP=76;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,61,9;MQ=60;FQ=-238 GT:PL:GQ 1/1:194,211,0:99 chr1 240975435 . C T 116 . DP=47;VDB=0.0042;AF1=1;AC1=2;DP4=0,1,2,43;MQ=60;FQ=-124;PV4=1,1.9e-06,1,1 GT:PL:GQ 1/1:149,97,0:99 chr1 240977964 . G T 49.1 . DP=7;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:82,18,0:33 chr1 241146322 . A G 225 . DP=27;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,4,10,6;MQ=60;FQ=187;PV4=1,0.13,1,1 GT:PL:GQ 0/1:255,0,214:99 chr1 241519098 . T A 222 . DP=43;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,13,27;MQ=59;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr1 241667233 . C T 132 . DP=32;VDB=0.0025;AF1=0.5;AC1=1;DP4=17,0,14,0;MQ=60;FQ=135;PV4=1,0.24,1,1 GT:PL:GQ 0/1:162,0,179:99 chr1 241667244 . G T 83 . DP=34;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,34,0;MQ=59;FQ=-129 GT:PL:GQ 1/1:116,102,0:99 chr1 241675119 . G C 31 . DP=3;VDB=0.0196;AF1=0.5008;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-4.12;PV4=1,1,1,1 GT:PL:GQ 0/1:61,0,25:28 chr1 241676758 . C T 22 . DP=15;VDB=0.0004;AF1=0.5;AC1=1;DP4=10,0,5,0;MQ=60;FQ=25;PV4=1,9.4e-05,1,1 GT:PL:GQ 0/1:52,0,155:55 chr1 241712230 . G A 225 . DP=69;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,18,13,18;MQ=59;FQ=225;PV4=0.47,0.011,0.44,1 GT:PL:GQ 0/1:255,0,255:99 chr1 241767930 . G A 113 . DP=19;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,2,13;MQ=60;FQ=-72 GT:PL:GQ 1/1:146,45,0:87 chr1 241838057 . C T 3.02 . DP=5;VDB=0.0333;AF1=0.5005;AC1=1;DP4=0,1,1,2;MQ=54;FQ=-4.88;PV4=1,0.0094,0.33,0.18 GT:PL:GQ 0/1:30,0,25:27 chr1 241838065 . T C 7.01 . DP=5;VDB=0.0333;AF1=0.5039;AC1=1;DP4=0,1,1,2;MQ=54;FQ=-9.56;PV4=1,0.042,0.33,0.21 GT:PL:GQ 0/1:36,0,18:23 chr1 241847018 . C T 60 . DP=11;VDB=0.0017;AF1=0.5;AC1=1;DP4=0,7,0,4;MQ=60;FQ=63;PV4=1,0.47,1,0.089 GT:PL:GQ 0/1:90,0,141:93 chr1 241886754 . T C 222 . DP=34;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,1,31;MQ=59;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr1 241886764 . A G 91 . DP=29;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,1,28;MQ=58;FQ=-114 GT:PL:GQ 1/1:124,87,0:99 chr1 241907691 . A G 222 . DP=54;VDB=0.0322;AF1=1;AC1=2;DP4=1,0,41,9;MQ=60;FQ=-160;PV4=1,1,1,0.23 GT:PL:GQ 1/1:255,133,0:99 chr1 241907817 . T C 222 . DP=110;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,51,55;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 241913062 . CTTTTT CTTTTTT 76.5 . INDEL;DP=13;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-70.5 GT:PL:GQ 1/1:117,36,0:69 chr1 241920499 . tgtaggt tgt 107 . INDEL;DP=11;VDB=0.0014;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=51;FQ=110;PV4=1,9.7e-12,0.0094,1 GT:PL:GQ 0/1:145,0,188:99 chr1 241933876 . A G 133 . DP=12;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,9,2;MQ=60;FQ=-60 GT:PL:GQ 1/1:166,33,0:63 chr1 241946763 . T C 225 . DP=55;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,21,4,21;MQ=59;FQ=225;PV4=1,0.0006,0.073,1 GT:PL:GQ 0/1:255,0,255:99 chr1 241946766 . A C 225 . DP=54;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,21,4,22;MQ=59;FQ=225;PV4=1,0.11,0.078,1 GT:PL:GQ 0/1:255,0,255:99 chr1 241964559 . C T 35 . DP=91;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,33,52;MQ=60;FQ=-95 GT:PL:GQ 1/1:255,255,187:99 chr1 242020495 . C T 55 . DP=6;VDB=0.0116;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=48.5;PV4=1,1,1,1 GT:PL:GQ 0/1:85,0,76:78 chr1 242030151 . A G 225 . DP=80;VDB=0.0345;AF1=0.5;AC1=1;DP4=32,12,29,7;MQ=60;FQ=225;PV4=0.44,0.21,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr1 242035263 . A G 7.8 . DP=4;VDB=0.0080;AF1=0.5007;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-4.28;PV4=1,0.011,1,1 GT:PL:GQ 0/1:37,0,25:29 chr1 242042545 . A G 71 . DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,12,10,8;MQ=60;FQ=74;PV4=1,1.6e-18,1,1 GT:PL:GQ 0/1:101,0,255:99 chr1 242045275 . C T 222 . DP=25;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,10;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr1 242048674 . C T 72 . DP=32;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,6,10,4;MQ=60;FQ=75;PV4=0.71,4.7e-17,1,1 GT:PL:GQ 0/1:102,0,255:99 chr1 242052685 . C G 9.31 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr1 242053030 . ATTTT ATTT 43.5 . INDEL;DP=18;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,7,0,8;MQ=60;FQ=37.8;PV4=1,0.01,1,0.29 GT:PL:GQ 0/1:81,0,73:75 chr1 242053042 . A G 34 . DP=9;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,4,0,5;MQ=60;FQ=37;PV4=1,0.00018,1,0.35 GT:PL:GQ 0/1:64,0,95:67 chr1 242253024 . T C 18.1 . DP=5;VDB=0.0020;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=20.7;PV4=1,0.0018,1,0.18 GT:PL:GQ 0/1:48,0,59:51 chr1 242511556 . AACAAAGACAAAGA AACAAAGA 107 . INDEL;DP=56;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,26,3,14;MQ=50;FQ=110;PV4=0.73,0.011,3.9e-16,1 GT:PL:GQ 0/1:145,0,255:99 chr1 243329049 . G A 97 . DP=207;VDB=0.0322;AF1=0.5;AC1=1;DP4=64,62,29,48;MQ=48;FQ=100;PV4=0.082,1.2e-71,2.2e-15,1 GT:PL:GQ 0/1:127,0,255:99 chr1 243354791 . C T 11.1 . DP=2;VDB=0.0047;AF1=1;AC1=2;DP4=0,0,0,2;MQ=24;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr1 243362331 . C T 56 . DP=27;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,27,0;MQ=26;FQ=-108 GT:PL:GQ 1/1:89,81,0:99 chr1 243419429 . T A 222 . DP=47;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,29,17;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr1 243481431 . A G 222 . DP=30;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,20;MQ=60;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr1 243507680 . CA CAA 169 . INDEL;DP=20;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,7,1,11;MQ=60;FQ=69.5;PV4=1,1,1,0.38 GT:PL:GQ 0/1:207,0,104:99 chr1 243579112 . G A 41 . DP=16;VDB=0.0325;AF1=0.5;AC1=1;DP4=1,6,1,7;MQ=60;FQ=44;PV4=1,1.4e-08,1,0.23 GT:PL:GQ 0/1:71,0,153:74 chr1 243589977 . T C 18.1 . DP=7;VDB=0.0163;AF1=0.5;AC1=1;DP4=0,5,0,2;MQ=60;FQ=21;PV4=1,0.35,1,1 GT:PL:GQ 0/1:48,0,120:51 chr1 243777066 . G A 40 . DP=10;VDB=0.0000;AF1=0.5;AC1=1;DP4=0,7,0,3;MQ=60;FQ=43;PV4=1,1,1,0.36 GT:PL:GQ 0/1:70,0,141:73 chr1 244528127 . T C 49 . DP=25;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,11,0,13;MQ=60;FQ=52;PV4=1,2.1e-12,1,1 GT:PL:GQ 0/1:79,0,158:82 chr1 244601152 . C T 39 . DP=19;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,8,1,7;MQ=60;FQ=42;PV4=0.6,3e-09,1,1 GT:PL:GQ 0/1:69,0,232:72 chr1 244715966 . G A 225 . DP=107;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,32,16,38;MQ=60;FQ=225;PV4=0.42,0.14,0.084,1 GT:PL:GQ 0/1:255,0,255:99 chr1 244724092 . G A 146 . DP=129;VDB=0.0400;AF1=0.5;AC1=1;DP4=45,29,32,17;MQ=60;FQ=149;PV4=0.7,1.3e-27,1,1 GT:PL:GQ 0/1:176,0,255:99 chr1 244735858 . A G 147 . DP=72;VDB=0.0400;AF1=0.5;AC1=1;DP4=25,13,20,12;MQ=59;FQ=150;PV4=0.81,1.5e-24,0.061,0.36 GT:PL:GQ 0/1:177,0,255:99 chr1 244747051 . G C 13 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr1 244747150 . G A 96 . DP=43;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,1,26,4;MQ=58;FQ=99;PV4=1,1.7e-21,1,1 GT:PL:GQ 0/1:126,0,165:99 chr1 244747339 . G A 98 . DP=10;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,4,0,6;MQ=60;FQ=61;PV4=1,1,1,1 GT:PL:GQ 0/1:128,0,88:91 chr1 244754961 . C A 35 . DP=15;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,1,5,1;MQ=60;FQ=38;PV4=1,8e-08,1,1 GT:PL:GQ 0/1:65,0,178:68 chr1 244773784 . T C 164 . DP=13;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:197,36,0:69 chr1 244773803 . T C 67 . DP=8;VDB=0.0070;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=61.4;PV4=1,1,1,0.19 GT:PL:GQ 0/1:97,0,89:91 chr1 244803205 . CTTTTTTTTTTTTTT CTTTTTTTTTTTT,CTTTTTTTTTTTTT,CTTTTTTTTTTT 24.5 . INDEL;DP=64;VDB=0.0190;AF1=1;AC1=2;DP4=2,1,40,8;MQ=59;FQ=-83.5;PV4=0.45,1,0.33,1 GT:PL:GQ 1/1:65,49,0,96,8,62,48,20,69,42:70 chr1 245027349 . C T 99 . DP=41;VDB=0.0393;AF1=0.5;AC1=1;DP4=10,11,8,11;MQ=60;FQ=102;PV4=0.76,4.3e-13,1,1 GT:PL:GQ 0/1:129,0,255:99 chr1 245133539 . A G 129 . DP=12;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,7,3;MQ=60;FQ=-57 GT:PL:GQ 1/1:162,30,0:57 chr1 245179188 . G T 69 . DP=20;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,19;MQ=56;FQ=-84 GT:PL:GQ 1/1:102,57,0:99 chr1 245179212 . C A 141 . DP=9;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,8;MQ=57;FQ=-51 GT:PL:GQ 1/1:174,24,0:45 chr1 245180639 . ATTTTTTTTTTT ATTTTTTTTTT 44.5 . INDEL;DP=26;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,8,14;MQ=60;FQ=-101 GT:PL:GQ 1/1:85,66,0:99 chr1 245180744 . G T 51.1 . DP=6;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:84,18,0:33 chr1 245180750 . A G 88.5 . DP=5;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:121,12,0:21 chr1 245222634 . C G 48.1 . DP=6;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:81,18,0:33 chr1 245222839 . G T 197 . DP=35;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,6,26;MQ=60;FQ=-123 GT:PL:GQ 1/1:230,96,0:99 chr1 245249945 . C T 32 . DP=8;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,1,5,0;MQ=60;FQ=35;PV4=0.37,0.00098,1,0.23 GT:PL:GQ 0/1:62,0,86:65 chr1 245318688 . C T 118 . DP=47;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,11,12,5;MQ=60;FQ=121;PV4=0.54,1.6e-12,1,1 GT:PL:GQ 0/1:148,0,255:99 chr1 245703990 . G T 180 . DP=104;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,52,44;MQ=60;FQ=-282 GT:PL:GQ 1/1:213,255,0:99 chr1 245775287 . G A 187 . DP=37;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,12,8,13;MQ=59;FQ=166;PV4=0.25,4.4e-05,0.21,1 GT:PL:GQ 0/1:217,0,193:99 chr1 245848996 . G A 146 . DP=91;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,35,9,27;MQ=59;FQ=149;PV4=0.36,2.8e-13,1,1 GT:PL:GQ 0/1:176,0,255:99 chr1 245849000 . C T 167 . DP=92;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,29,18,33;MQ=59;FQ=170;PV4=0.26,1.4e-18,0.039,0.38 GT:PL:GQ 0/1:197,0,255:99 chr1 245850095 . C T 225 . DP=114;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,41,19,32;MQ=60;FQ=225;PV4=0.69,1,0.14,0.47 GT:PL:GQ 0/1:255,0,255:99 chr1 245851304 . A G 222 . DP=46;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,14,31;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr1 245861571 . C T 188 . DP=32;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,11,2,16;MQ=59;FQ=190;PV4=0.63,0.083,0.19,1 GT:PL:GQ 0/1:218,0,225:99 chr1 246021851 . G A 161 . DP=31;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,4,14,6;MQ=60;FQ=155;PV4=0.69,9.4e-08,1,0.39 GT:PL:GQ 0/1:191,0,182:99 chr1 246021941 . T C 222 . DP=46;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,29;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr1 246027024 . A G 171 . DP=36;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,31,5;MQ=51;FQ=-135 GT:PL:GQ 1/1:204,108,0:99 chr1 246027029 . A T 147 . DP=47;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,39,6;MQ=51;FQ=-162 GT:PL:GQ 1/1:180,135,0:99 chr1 246027034 . G C 195 . DP=52;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,43,8;MQ=52;FQ=-181 GT:PL:GQ 1/1:228,154,0:99 chr1 246091457 . T C 222 . DP=31;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,8,22;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr1 246091515 . C T 98.3 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:131,15,0:27 chr1 246093465 . GAAAAAAAAAAAAAA GAAAAAAAAAAAAA 10.8 . INDEL;DP=59;VDB=0.0400;AF1=1;AC1=2;DP4=3,3,17,21;MQ=60;FQ=-98.5;PV4=1,0.4,1,1 GT:PL:GQ 1/1:51,64,0:69 chr1 246110573 . A G 222 . DP=71;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,59,11;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr1 246110850 . C T 59 . DP=19;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,8,0,9;MQ=60;FQ=62;PV4=1,3.9e-09,1,1 GT:PL:GQ 0/1:89,0,173:92 chr1 246490438 . T C 88 . DP=56;VDB=0.0365;AF1=0.5;AC1=1;DP4=25,5,21,3;MQ=59;FQ=91;PV4=0.72,3.9e-23,0.056,0.15 GT:PL:GQ 0/1:118,0,255:99 chr1 246490442 . A G 99 . DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,5,27,4;MQ=59;FQ=102;PV4=1,1.3e-21,0.078,0.027 GT:PL:GQ 0/1:129,0,255:99 chr1 246670333 . A G 128 . DP=23;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,20,2;MQ=59;FQ=-93 GT:PL:GQ 1/1:161,66,0:99 chr1 246670481 . C G 222 . DP=61;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,12,49;MQ=58;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr1 246711789 . T A 5.46 . DP=11;VDB=0.0033;AF1=0.4999;AC1=1;DP4=2,0,3,1;MQ=60;FQ=7.71;PV4=1,0.00046,1,0.26 GT:PL:GQ 0/1:34,0,50:34 chr1 246711816 . GAAAAA GAAAA 14.6 . INDEL;DP=24;VDB=0.0042;AF1=0.5;AC1=1;DP4=12,2,10,0;MQ=60;FQ=17.6;PV4=0.49,0.00018,1,0.0013 GT:PL:GQ 0/1:52,0,88:55 chr1 246712033 . A G 55 . DP=15;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,15;MQ=60;FQ=-72 GT:PL:GQ 1/1:88,45,0:87 chr1 246714587 . G A 60 . DP=29;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,10,3,10;MQ=56;FQ=63;PV4=0.45,8.8e-17,0.044,1 GT:PL:GQ 0/1:90,0,255:93 chr1 246714636 . T A 46 . DP=19;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,6,1,9;MQ=54;FQ=49;PV4=0.3,9.7e-10,0.085,0.5 GT:PL:GQ 0/1:76,0,203:79 chr1 246720798 . G A 154 . DP=37;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,27;MQ=60;FQ=-135 GT:PL:GQ 1/1:187,108,0:99 chr1 246727558 . G T 18 . DP=3;VDB=0.0197;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:50,9,0:15 chr1 246755124 . T C 222 . DP=33;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,16;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr1 246903654 . G C 45 . DP=12;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,3,1,7;MQ=60;FQ=48;PV4=1,4.1e-07,1,0.049 GT:PL:GQ 0/1:75,0,110:78 chr1 246929483 . A G 136 . DP=19;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,8,2,6;MQ=60;FQ=139;PV4=1,0.46,1,1 GT:PL:GQ 0/1:166,0,217:99 chr1 246939610 . ATATTTATTT ATATTTATTTATTT 217 . INDEL;DP=63;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,11,21,6;MQ=57;FQ=217;PV4=0.4,1,0.00073,1 GT:PL:GQ 0/1:255,0,255:99 chr1 246939671 . C T 168 . DP=74;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,24,17,23;MQ=58;FQ=171;PV4=0.22,4.2e-26,1,1 GT:PL:GQ 0/1:198,0,255:99 chr1 246939856 . G A 85 . DP=54;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,14,13,4;MQ=60;FQ=88;PV4=0.35,1e-12,1,0.31 GT:PL:GQ 0/1:115,0,255:99 chr1 246939943 . T C 82 . DP=60;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,22,11,13;MQ=60;FQ=85;PV4=0.59,8.4e-23,1,1 GT:PL:GQ 0/1:112,0,255:99 chr1 246940179 . G A 184 . DP=32;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,9,7,4;MQ=60;FQ=187;PV4=0.72,1,1,1 GT:PL:GQ 0/1:214,0,255:99 chr1 246940182 . C A 72 . DP=33;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,9,7,4;MQ=60;FQ=75;PV4=1,8.9e-13,1,0.48 GT:PL:GQ 0/1:102,0,255:99 chr1 246940442 . T C 91 . DP=8;VDB=0.0006;AF1=0.5;AC1=1;DP4=3,0,4,1;MQ=60;FQ=52;PV4=1,0.09,1,0.43 GT:PL:GQ 0/1:121,0,79:82 chr1 246943547 . A C 133 . DP=14;VDB=0.0081;AF1=0.5;AC1=1;DP4=5,1,6,1;MQ=60;FQ=104;PV4=1,1,1,1 GT:PL:GQ 0/1:163,0,131:99 chr1 247006160 . G T 82 . DP=17;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,9,0,6;MQ=60;FQ=85;PV4=0.51,0.39,1,1 GT:PL:GQ 0/1:112,0,219:99 chr1 247039501 . C G 40 . DP=3;VDB=0.0145;AF1=0.5004;AC1=1;DP4=1,0,1,1;MQ=60;FQ=3.55;PV4=1,1,1,0.33 GT:PL:GQ 0/1:70,0,28:31 chr1 247048834 . T C 6.2 . DP=4;VDB=0.0182;AF1=0.4999;AC1=1;DP4=2,0,2,0;MQ=38;FQ=8.42;PV4=1,0.044,0.28,0.29 GT:PL:GQ 0/1:35,0,47:36 chr1 247109267 . A C 132 . DP=70;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,21,9,31;MQ=59;FQ=135;PV4=1,1.2e-24,0.12,0.032 GT:PL:GQ 0/1:162,0,255:99 chr1 247109291 . CG C 217 . INDEL;DP=55;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,19,5,26;MQ=59;FQ=210;PV4=1,0.0057,0.12,1 GT:PL:GQ 0/1:255,0,245:99 chr1 247109296 . A G 110 . DP=48;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,18,4,24;MQ=60;FQ=113;PV4=0.63,3.6e-26,1,1 GT:PL:GQ 0/1:140,0,198:99 chr1 247150740 . T C 48 . DP=45;VDB=0.0384;AF1=0.5;AC1=1;DP4=12,13,6,12;MQ=59;FQ=51;PV4=0.37,7e-22,0.12,0.21 GT:PL:GQ 0/1:78,0,255:81 chr1 247151487 . C T 225 . DP=152;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,73,17,43;MQ=60;FQ=225;PV4=0.33,0.23,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 247151557 . A G 58 . DP=46;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,20,2,23;MQ=60;FQ=61;PV4=0.49,1.1e-20,1,0.054 GT:PL:GQ 0/1:88,0,171:91 chr1 247159480 . T G 97 . DP=9;VDB=0.0001;AF1=0.5;AC1=1;DP4=0,2,0,6;MQ=60;FQ=11.3;PV4=1,1,1,1 GT:PL:GQ 0/1:127,0,38:41 chr1 247162628 . C T 139 . DP=179;VDB=0.0392;AF1=0.5;AC1=1;DP4=41,49,31,54;MQ=60;FQ=142;PV4=0.28,2.7e-61,0.15,0.4 GT:PL:GQ 0/1:169,0,255:99 chr1 247162658 . C T 222 . DP=147;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,36,107;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 247201591 . T C 90 . DP=141;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,39,28,41;MQ=60;FQ=93;PV4=1,4.4e-62,0.17,1 GT:PL:GQ 0/1:120,0,255:99 chr1 247241795 . C A 27 . DP=10;VDB=0.0189;AF1=0.5;AC1=1;DP4=5,2,3,0;MQ=60;FQ=30;PV4=1,1,1,0.5 GT:PL:GQ 0/1:57,0,153:60 chr1 247241850 . G C 19.1 . DP=23;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,8,4,2;MQ=60;FQ=22;PV4=0.66,6.1e-07,1,1 GT:PL:GQ 0/1:49,0,255:52 chr1 247287256 . T A 3.54 . DP=66;VDB=0.0025;AF1=0.4998;AC1=1;DP4=15,32,1,15;MQ=46;FQ=5.47;PV4=0.05,1.2e-18,0.44,1 GT:PL:GQ 0/1:31,0,255:30 chr1 247287260 . A G 109 . DP=62;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,31,5,16;MQ=46;FQ=112;PV4=1,7.5e-10,0.0034,0.15 GT:PL:GQ 0/1:139,0,255:99 chr1 247287269 . T C 147 . DP=57;VDB=0.0164;AF1=0.5;AC1=1;DP4=7,10,4,28;MQ=45;FQ=150;PV4=0.033,4.8e-09,0.0044,0.4 GT:PL:GQ 0/1:177,0,238:99 chr1 247322298 . G T 41 . DP=20;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,8,3,4;MQ=60;FQ=44;PV4=1,3.9e-06,1,1 GT:PL:GQ 0/1:71,0,239:74 chr1 247323260 . C A 52 . DP=10;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,4,0,6;MQ=60;FQ=53.8;PV4=1,0.02,1,0.085 GT:PL:GQ 0/1:82,0,87:84 chr1 247337159 . A G 225 . DP=76;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,20,11,24;MQ=40;FQ=225;PV4=0.23,0.2,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 247365430 . A G 157 . DP=65;VDB=0.0384;AF1=0.5;AC1=1;DP4=10,22,7,24;MQ=60;FQ=160;PV4=0.57,7.6e-16,0.16,0.23 GT:PL:GQ 0/1:187,0,255:99 chr1 247419509 . T C 225 . DP=150;VDB=0.0380;AF1=0.5;AC1=1;DP4=46,15,63,22;MQ=60;FQ=225;PV4=1,1,0.2,1 GT:PL:GQ 0/1:255,0,255:99 chr1 247419664 . C T 142 . DP=182;VDB=0.0380;AF1=0.5;AC1=1;DP4=29,65,21,64;MQ=60;FQ=145;PV4=0.41,3.1e-79,0.15,0.5 GT:PL:GQ 0/1:172,0,255:99 chr1 247485932 . A G 180 . DP=10;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,6,2;MQ=60;FQ=-51 GT:PL:GQ 1/1:213,24,0:45 chr1 247486213 . G A 18.1 . DP=9;VDB=0.0149;AF1=0.5;AC1=1;DP4=5,2,0,2;MQ=60;FQ=21;PV4=0.17,1,1,1 GT:PL:GQ 0/1:48,0,171:51 chr1 247486421 . G C 67 . DP=11;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,10,0;MQ=55;FQ=-57 GT:PL:GQ 1/1:100,30,0:57 chr1 247587477 . G A 222 . DP=85;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,38,45;MQ=60;FQ=-277 GT:PL:GQ 1/1:255,250,0:99 chr1 247587531 . A G 217 . DP=89;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,47,36;MQ=59;FQ=-277 GT:PL:GQ 1/1:250,250,0:99 chr1 247597344 . G A 89 . DP=8;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,8,0;MQ=29;FQ=-51 GT:PL:GQ 1/1:122,24,0:45 chr1 247597348 . T C 33 . DP=8;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,8,0;MQ=29;FQ=-51 GT:PL:GQ 1/1:66,24,0:44 chr1 247597349 . G A 42 . DP=8;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,8,0;MQ=29;FQ=-51 GT:PL:GQ 1/1:75,24,0:45 chr1 247597365 . G A 98 . DP=19;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,15,0;MQ=42;FQ=-72 GT:PL:GQ 1/1:131,45,0:87 chr1 247597656 . TGGGG TGGG 81.5 . INDEL;DP=21;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,19;MQ=59;FQ=-91.5 GT:PL:GQ 1/1:122,57,0:99 chr1 247599232 . G A 44.3 . DP=7;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:77,15,0:27 chr1 247614617 . C T 169 . DP=41;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,9,11,11;MQ=59;FQ=172;PV4=1,2e-06,1,1 GT:PL:GQ 0/1:199,0,255:99 chr1 247614693 . C T 222 . DP=59;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,22,33;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 247614896 . A C 225 . DP=55;VDB=0.0271;AF1=0.5;AC1=1;DP4=14,17,12,11;MQ=60;FQ=225;PV4=0.78,0.044,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 247615252 . G A 185 . DP=107;VDB=0.0398;AF1=0.5;AC1=1;DP4=25,26,20,33;MQ=60;FQ=188;PV4=0.32,4.1e-27,1,0.16 GT:PL:GQ 0/1:215,0,255:99 chr1 247615261 . GAA GA 217 . INDEL;DP=102;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,27,17,31;MQ=60;FQ=217;PV4=0.23,1.5e-14,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 247695427 . C G 168 . DP=77;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,43,32;MQ=60;FQ=-253 GT:PL:GQ 1/1:201,226,0:99 chr1 247695612 . G A 186 . DP=97;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,43,46;MQ=59;FQ=-282 GT:PL:GQ 1/1:219,255,0:99 chr1 247695756 . T C 222 . DP=69;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,22,41;MQ=59;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 247712613 . A G 98 . DP=12;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,6,0,6;MQ=60;FQ=97.5;PV4=1,1,1,0.18 GT:PL:GQ 0/1:128,0,127:99 chr1 247752019 . G C 225 . DP=86;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,22,24,20;MQ=60;FQ=225;PV4=0.52,0.24,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 247752109 . A G 225 . DP=98;VDB=0.0365;AF1=0.5;AC1=1;DP4=27,20,26,24;MQ=60;FQ=225;PV4=0.68,0.13,1,0.34 GT:PL:GQ 0/1:255,0,255:99 chr1 247752367 . A G 119 . DP=74;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,20,16,16;MQ=60;FQ=122;PV4=1,2.6e-33,1,1 GT:PL:GQ 0/1:149,0,255:99 chr1 247769217 . T G 180 . DP=168;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,57,31,49;MQ=60;FQ=183;PV4=0.33,1.6e-58,0.27,0.36 GT:PL:GQ 0/1:210,0,255:99 chr1 247769592 . C T 225 . DP=106;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,44,11,31;MQ=60;FQ=225;PV4=0.83,0.38,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 247769752 . A G 225 . DP=52;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,13,7,23;MQ=59;FQ=225;PV4=0.23,0.1,0.38,0.33 GT:PL:GQ 0/1:255,0,255:99 chr1 247835352 . C T 3.54 . DP=10;VDB=0.0050;AF1=0.4998;AC1=1;DP4=7,0,3,0;MQ=60;FQ=5.47;PV4=1,7.3e-05,1,1 GT:PL:GQ 0/1:31,0,136:30 chr1 247835950 . T C 225 . DP=49;VDB=0.0373;AF1=0.5;AC1=1;DP4=10,15,9,13;MQ=60;FQ=225;PV4=1,0.43,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 247875608 . C G 225 . DP=62;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,21,9,19;MQ=60;FQ=225;PV4=0.79,0.27,1,0.11 GT:PL:GQ 0/1:255,0,255:99 chr1 247921100 . T G 222 . DP=58;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,28,26;MQ=59;FQ=-156;PV4=0.49,0.4,0.42,1 GT:PL:GQ 1/1:255,129,0:99 chr1 247921352 . C T 222 . DP=57;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,35,21;MQ=59;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr1 247921717 . C A 84 . DP=25;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,18;MQ=60;FQ=-90 GT:PL:GQ 1/1:117,63,0:99 chr1 247978087 . G A 32 . DP=11;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:65,27,0:50 chr1 247978135 . C A 50 . DP=45;VDB=0.0164;AF1=0.5;AC1=1;DP4=23,2,19,1;MQ=59;FQ=53;PV4=1,1.1e-13,0.13,1 GT:PL:GQ 0/1:80,0,240:83 chr1 247978319 . A G 190 . DP=81;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,35,42;MQ=60;FQ=-259 GT:PL:GQ 1/1:223,232,0:99 chr1 247978541 . AAGGAG AAG 214 . INDEL;DP=96;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,52,38;MQ=58;FQ=-290 GT:PL:GQ 1/1:255,255,0:99 chr1 247978996 . A G 180 . DP=32;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,5,27;MQ=60;FQ=-123 GT:PL:GQ 1/1:213,96,0:99 chr1 248004614 . G A 222 . DP=91;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,50,37;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248004687 . C G 222 . DP=106;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,60,39;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248004775 . C T 222 . DP=126;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,48,72;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248004848 . G C 222 . DP=97;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,31,64;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248004877 . C T 222 . DP=89;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,33,49;MQ=59;FQ=-274 GT:PL:GQ 1/1:255,247,0:99 chr1 248004884 . T C 222 . DP=85;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,37,44;MQ=59;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr1 248005213 . G C 222 . DP=38;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,26;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr1 248020556 . G C 62.1 . DP=6;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,6,0;MQ=56;FQ=-45 GT:PL:GQ 1/1:95,18,0:33 chr1 248023966 . C T 225 . DP=48;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,15,9,12;MQ=59;FQ=225;PV4=1,1,0.43,1 GT:PL:GQ 0/1:255,0,255:99 chr1 248039713 . A G 159 . DP=85;VDB=0.0244;AF1=0.5;AC1=1;DP4=19,26,19,21;MQ=60;FQ=162;PV4=0.67,4.2e-32,0.15,1 GT:PL:GQ 0/1:189,0,255:99 chr1 248058797 . T G 175 . DP=20;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,18,0;MQ=60;FQ=-81 GT:PL:GQ 1/1:208,54,0:99 chr1 248058845 . A C 222 . DP=53;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,49,2;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr1 248058879 . A T 222 . DP=91;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,73,16;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248059423 . C T 225 . DP=81;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,15,16,27;MQ=60;FQ=225;PV4=0.073,0.0025,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 248059456 . G A 225 . DP=75;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,11,12,29;MQ=59;FQ=225;PV4=0.0021,0.2,1,0.37 GT:PL:GQ 0/1:255,0,255:99 chr1 248059476 . A C 171 . DP=75;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,13,9,24;MQ=60;FQ=174;PV4=0.001,2.9e-13,1,1 GT:PL:GQ 0/1:201,0,255:99 chr1 248059703 . T A 134 . DP=81;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,32,10,19;MQ=60;FQ=137;PV4=1,1.3e-17,1,1 GT:PL:GQ 0/1:164,0,255:99 chr1 248059712 . T C 225 . DP=71;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,27,9,20;MQ=60;FQ=225;PV4=1,0.24,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 248059856 . T C 33 . DP=15;VDB=0.0081;AF1=0.5;AC1=1;DP4=3,4,1,7;MQ=60;FQ=36;PV4=0.28,5.2e-05,1,1 GT:PL:GQ 0/1:63,0,152:66 chr1 248084434 . G A 149 . DP=33;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,4,27;MQ=42;FQ=-120 GT:PL:GQ 1/1:182,93,0:99 chr1 248084464 . T C 66 . DP=9;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,9;MQ=30;FQ=-54 GT:PL:GQ 1/1:99,27,0:51 chr1 248085108 . C T 99.1 . DP=7;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,7,0;MQ=32;FQ=-48 GT:PL:GQ 1/1:132,21,0:39 chr1 248085341 . T A 108 . DP=19;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,2,15;MQ=58;FQ=-78 GT:PL:GQ 1/1:141,51,0:99 chr1 248112627 . T C 225 . DP=107;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,45,13,30;MQ=54;FQ=225;PV4=0.83,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 248112745 . G T 222 . DP=92;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,63,26;MQ=41;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248112762 . T C 107 . DP=91;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,5,15;MQ=38;FQ=-87 GT:PL:GQ 1/1:140,60,0:99 chr1 248112763 . G A 124 . DP=93;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,5,16;MQ=38;FQ=-90 GT:PL:GQ 1/1:157,63,0:99 chr1 248112771 . C T 156 . DP=102;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,67,30;MQ=37;FQ=-282 GT:PL:GQ 1/1:189,255,0:99 chr1 248112809 . A G 222 . DP=122;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,61,56;MQ=43;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248112836 . A G 222 . DP=114;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,41,69;MQ=45;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248112915 . A G 225 . DP=72;VDB=0.0099;AF1=0.5;AC1=1;DP4=14,26,9,20;MQ=49;FQ=225;PV4=0.8,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr1 248128929 . G A 193 . DP=132;VDB=0.0400;AF1=0.5;AC1=1;DP4=20,32,32,40;MQ=60;FQ=196;PV4=0.58,5.9e-41,1,0.47 GT:PL:GQ 0/1:223,0,255:99 chr1 248129240 . G A 145 . DP=74;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,21,14,19;MQ=60;FQ=148;PV4=0.81,1e-19,1,1 GT:PL:GQ 0/1:175,0,255:99 chr1 248262644 . A G 111 . DP=17;VDB=0.0033;AF1=0.5;AC1=1;DP4=8,0,8,0;MQ=60;FQ=107;PV4=1,1,1,1 GT:PL:GQ 0/1:141,0,135:99 chr1 248343543 . C T 92 . DP=38;VDB=0.0140;AF1=0.5;AC1=1;DP4=7,6,18,4;MQ=54;FQ=95;PV4=0.12,1.3e-14,0.46,0.38 GT:PL:GQ 0/1:122,0,226:99 chr1 248366702 . G A 176 . DP=174;VDB=0.0400;AF1=0.5;AC1=1;DP4=53,40,52,27;MQ=59;FQ=179;PV4=0.27,5.3e-44,1,0.13 GT:PL:GQ 0/1:206,0,255:99 chr1 248366792 . T C 225 . DP=147;VDB=0.0392;AF1=0.5;AC1=1;DP4=30,49,16,45;MQ=59;FQ=225;PV4=0.15,1,0.019,1 GT:PL:GQ 0/1:255,0,255:99 chr1 248367415 . C T 215 . DP=20;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,18;MQ=60;FQ=-84 GT:PL:GQ 1/1:248,57,0:99 chr1 248402758 . C T 165 . DP=102;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,40,56;MQ=60;FQ=-282 GT:PL:GQ 1/1:198,255,0:99 chr1 248457979 . C A 222 . DP=56;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,21,34;MQ=59;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr1 248457993 . C G 111 . DP=54;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,19,5,15;MQ=59;FQ=114;PV4=0.37,2.7e-20,0.38,1 GT:PL:GQ 0/1:141,0,255:99 chr1 248458676 . T C 20.6 . DP=4;VDB=0.0276;AF1=1;AC1=2;DP4=0,0,4,0;MQ=22;FQ=-39 GT:PL:GQ 1/1:53,12,0:21 chr1 248458689 . A G 64 . DP=8;VDB=0.0305;AF1=1;AC1=2;DP4=0,0,7,1;MQ=30;FQ=-51 GT:PL:GQ 1/1:97,24,0:45 chr1 248458717 . C G 118 . DP=14;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,11,3;MQ=43;FQ=-69 GT:PL:GQ 1/1:151,42,0:81 chr1 248458736 . A G 55 . DP=20;VDB=0.0099;AF1=0.5;AC1=1;DP4=5,6,8,1;MQ=45;FQ=58;PV4=0.07,2.7e-06,1,0.48 GT:PL:GQ 0/1:85,0,164:88 chr1 248458760 . C A 86 . DP=25;VDB=0.0216;AF1=0.5;AC1=1;DP4=7,7,9,2;MQ=47;FQ=89;PV4=0.21,2.6e-08,1,1 GT:PL:GQ 0/1:116,0,210:99 chr1 248458875 . CT C 39.5 . INDEL;DP=8;VDB=0.0008;AF1=0.5;AC1=1;DP4=3,2,1,2;MQ=55;FQ=42.5;PV4=1,1,0.2,1 GT:PL:GQ 0/1:77,0,145:80 chr1 248486895 . G T 183 . DP=60;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,43,14;MQ=60;FQ=-199 GT:PL:GQ 1/1:216,172,0:99 chr1 248486913 . A G 222 . DP=70;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,44,23;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr1 248487016 . C T 98 . DP=51;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,15,4,24;MQ=60;FQ=101;PV4=0.18,3.5e-26,1,1 GT:PL:GQ 0/1:128,0,255:99 chr1 248487638 . A G 157 . DP=9;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:190,27,0:51 chr1 248487768 . A G 120 . DP=72;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,55,11;MQ=59;FQ=-226 GT:PL:GQ 1/1:153,199,0:99 chr1 248512064 . T G 133 . DP=131;VDB=0.0380;AF1=0.5;AC1=1;DP4=55,24,36,14;MQ=59;FQ=136;PV4=0.84,1.3e-37,1,1 GT:PL:GQ 0/1:163,0,255:99 chr1 248512094 . C T 137 . DP=159;VDB=0.0345;AF1=0.5;AC1=1;DP4=49,44,42,22;MQ=59;FQ=140;PV4=0.14,1.4e-42,1,0.5 GT:PL:GQ 0/1:167,0,255:99 chr1 248512498 . A G 108 . DP=60;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,20,9,12;MQ=60;FQ=111;PV4=0.79,2.4e-19,1,1 GT:PL:GQ 0/1:138,0,255:99 chr1 248512637 . C T 145 . DP=46;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,8,6,24;MQ=59;FQ=148;PV4=0.048,1.4e-18,0.24,1 GT:PL:GQ 0/1:175,0,255:99 chr1 248512749 . G A 117 . DP=43;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,7,14,7;MQ=60;FQ=120;PV4=1,4.1e-19,1,0.46 GT:PL:GQ 0/1:147,0,255:99 chr1 248512767 . G T 225 . DP=46;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,8,15,8;MQ=59;FQ=225;PV4=1,0.15,0.17,0.4 GT:PL:GQ 0/1:255,0,255:99 chr1 248525053 . A T 129 . DP=84;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,42,7,17;MQ=53;FQ=132;PV4=0.79,1,2.4e-30,1 GT:PL:GQ 0/1:159,0,255:99 chr1 248525060 . T A 52 . DP=78;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,40,7,18;MQ=52;FQ=55;PV4=0.79,4.3e-22,2e-29,1 GT:PL:GQ 0/1:82,0,255:85 chr1 248525071 . T C 43 . DP=63;VDB=0.0244;AF1=0.5;AC1=1;DP4=10,30,5,17;MQ=52;FQ=46;PV4=1,2.6e-27,3.1e-22,0.078 GT:PL:GQ 0/1:73,0,255:76 chr1 248525146 . C T 35 . DP=22;VDB=0.0004;AF1=0.5;AC1=1;DP4=12,2,4,3;MQ=46;FQ=38;PV4=0.28,0.37,0.00047,1 GT:PL:GQ 0/1:65,0,207:68 chr1 248525193 . C T 163 . DP=68;VDB=0.0216;AF1=0.5;AC1=1;DP4=34,12,16,6;MQ=49;FQ=166;PV4=1,0.16,2.9e-06,1 GT:PL:GQ 0/1:193,0,255:99 chr1 248525638 . CA C 217 . INDEL;DP=110;VDB=0.0380;AF1=0.5;AC1=1;DP4=23,32,25,29;MQ=55;FQ=217;PV4=0.7,1,1,0.45 GT:PL:GQ 0/1:255,0,255:99 chr1 248525647 . C A 129 . DP=108;VDB=0.0345;AF1=0.5;AC1=1;DP4=24,30,22,28;MQ=54;FQ=132;PV4=1,2.1e-37,9.8e-07,1 GT:PL:GQ 0/1:159,0,255:99 chr1 248525650 . C T 129 . DP=111;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,32,22,27;MQ=55;FQ=132;PV4=0.69,6.6e-38,1.7e-06,1 GT:PL:GQ 0/1:159,0,255:99 chr1 248525657 . G A 149 . DP=112;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,31,23,33;MQ=54;FQ=152;PV4=1,1.5e-39,6.4e-07,0.34 GT:PL:GQ 0/1:179,0,255:99 chr1 248525780 . C T 51 . DP=30;VDB=0.0325;AF1=0.5;AC1=1;DP4=9,7,9,3;MQ=57;FQ=54;PV4=0.43,3.6e-09,0.2,1 GT:PL:GQ 0/1:81,0,255:84 chr1 248550894 . T G 60 . DP=57;VDB=0.0244;AF1=0.5;AC1=1;DP4=31,5,16,4;MQ=60;FQ=63;PV4=0.71,1.6e-21,1,1 GT:PL:GQ 0/1:90,0,255:93 chr1 248550970 . A G 135 . DP=119;VDB=0.0365;AF1=0.5;AC1=1;DP4=45,26,29,17;MQ=60;FQ=138;PV4=1,3.2e-42,1,1 GT:PL:GQ 0/1:165,0,255:99 chr1 248550976 . T G 222 . DP=125;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,73,50;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248551203 . T C 81 . DP=28;VDB=0.0164;AF1=0.5;AC1=1;DP4=8,10,4,6;MQ=60;FQ=84;PV4=1,3.1e-10,1,0.31 GT:PL:GQ 0/1:111,0,255:99 chr1 248551560 . C T 125 . DP=95;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,27,21,25;MQ=59;FQ=128;PV4=1,4.5e-40,1,0.32 GT:PL:GQ 0/1:155,0,255:99 chr1 248551636 . T G 160 . DP=95;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,23,20,20;MQ=60;FQ=163;PV4=0.68,1e-36,1,0.37 GT:PL:GQ 0/1:190,0,255:99 chr1 248551955 . C A 25 . DP=3;VDB=0.0089;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:57,9,0:15 chr1 248569282 . A G 12.3 . DP=15;VDB=0.0019;AF1=0.5;AC1=1;DP4=9,1,5,0;MQ=60;FQ=15.1;PV4=1,2e-07,1,0.32 GT:PL:GQ 0/1:42,0,186:44 chr1 248569369 . A G 225 . DP=61;VDB=0.0345;AF1=0.5;AC1=1;DP4=23,6,25,5;MQ=60;FQ=225;PV4=0.75,0.2,1,0.43 GT:PL:GQ 0/1:255,0,255:99 chr1 248570440 . G A 65 . DP=10;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,1,8;MQ=57;FQ=-54 GT:PL:GQ 1/1:98,27,0:51 chr1 248604465 . C T 3.01 . DP=17;VDB=0.0049;AF1=0.4997;AC1=1;DP4=10,3,1,3;MQ=40;FQ=4.77;PV4=0.099,3.1e-05,0.065,0.19 GT:PL:GQ 0/1:30,0,216:28 chr1 248604542 . C T 4.77 . DP=13;VDB=0.0049;AF1=0.4999;AC1=1;DP4=6,3,0,4;MQ=39;FQ=6.99;PV4=0.07,1,0.014,1 GT:PL:GQ 0/1:33,0,181:33 chr1 248604559 . TTCT TTCTCT 5.77 . INDEL;DP=6;VDB=0.0197;AF1=1;AC1=2;DP4=0,0,0,3;MQ=19;FQ=-43.5 GT:PL:GQ 1/1:44,9,0:9 chr1 248604765 . T A 37 . DP=68;VDB=0.0384;AF1=0.5;AC1=1;DP4=26,23,10,8;MQ=24;FQ=40;PV4=1,0.47,0.074,0.25 GT:PL:GQ 0/1:67,0,208:70 chr1 248605436 . C G 17.1 . DP=14;VDB=0.0095;AF1=0.5;AC1=1;DP4=2,8,0,4;MQ=51;FQ=20.1;PV4=1,1,7e-06,1 GT:PL:GQ 0/1:47,0,203:50 chr1 248651927 . A G 29 . DP=71;VDB=0.0081;AF1=0.5;AC1=1;DP4=28,13,25,5;MQ=37;FQ=32;PV4=0.18,3e-37,4.4e-13,1 GT:PL:GQ 0/1:59,0,255:62 chr1 248685253 . T C 222 . DP=82;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,39,41;MQ=59;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr1 248722671 . T A 8.64 . DP=25;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,0,8,1;MQ=17;FQ=11.3;PV4=0.36,2.5e-07,0.1,0.3 GT:PL:GQ 0/1:38,0,59:40 chr1 248722722 . T C 34.2 . DP=27;VDB=0.0081;AF1=1;AC1=2;DP4=3,1,23,0;MQ=19;FQ=-44;PV4=0.15,5.8e-16,1,1 GT:PL:GQ 1/1:67,17,0:31 chr1 248722777 . T A 80 . DP=54;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,25,6,10;MQ=24;FQ=83;PV4=0.53,1,0.27,1 GT:PL:GQ 0/1:110,0,180:99 chr1 248737259 . C G 48 . DP=17;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,16,0;MQ=30;FQ=-75 GT:PL:GQ 1/1:81,48,0:90 chr1 248737329 . C T 100 . DP=80;VDB=0.0099;AF1=0.5;AC1=1;DP4=40,12,19,7;MQ=46;FQ=103;PV4=0.78,4.9e-13,0.14,1 GT:PL:GQ 0/1:130,0,255:99 chr1 248737454 . A G 194 . DP=156;VDB=0.0298;AF1=0.5;AC1=1;DP4=52,47,33,24;MQ=43;FQ=197;PV4=0.62,0.038,1.5e-13,1 GT:PL:GQ 0/1:224,0,255:99 chr1 248789454 . G C 196 . DP=50;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,35,15;MQ=60;FQ=-178 GT:PL:GQ 1/1:229,151,0:99 chr1 248789504 . T C 222 . DP=81;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,45,33;MQ=60;FQ=-262 GT:PL:GQ 1/1:255,235,0:99 chr1 248789753 . G C 125 . DP=64;VDB=0.0373;AF1=0.5;AC1=1;DP4=18,14,17,13;MQ=60;FQ=128;PV4=1,2.3e-32,0.15,0.19 GT:PL:GQ 0/1:155,0,255:99 chr1 248790075 . A G 222 . DP=93;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,40,52;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248790167 . A G 180 . DP=84;VDB=0.0399;AF1=0.5;AC1=1;DP4=20,18,20,21;MQ=60;FQ=183;PV4=0.82,1.3e-20,0.17,0.36 GT:PL:GQ 0/1:210,0,255:99 chr1 248790199 . T C 118 . DP=68;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,20,17,16;MQ=60;FQ=121;PV4=0.46,3.2e-13,0.16,0.35 GT:PL:GQ 0/1:148,0,255:99 chr1 248801633 . A G 4.61 . DP=2;VDB=0.0094;AF1=1;AC1=2;DP4=0,0,2,0;MQ=19;FQ=-33 GT:PL:GQ 1/1:34,6,0:5 chr1 248801778 . A T 62 . DP=10;VDB=0.0325;AF1=1;AC1=2;DP4=0,0,10,0;MQ=21;FQ=-57 GT:PL:GQ 1/1:95,30,0:57 chr1 248801944 . TCAGCACGCAGCA TCAGCA 62.5 . INDEL;DP=26;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,2,10;MQ=19;FQ=-70.5 GT:PL:GQ 1/1:103,36,0:69 chr1 248813168 . T C 28 . DP=13;VDB=0.0004;AF1=0.5;AC1=1;DP4=6,0,6,0;MQ=46;FQ=31;PV4=1,5.1e-10,0.0033,0.14 GT:PL:GQ 0/1:58,0,127:61 chr1 248813280 . C T 113 . DP=59;VDB=0.0380;AF1=0.5;AC1=1;DP4=23,9,13,14;MQ=51;FQ=116;PV4=0.11,3.2e-25,1,0.018 GT:PL:GQ 0/1:143,0,255:99 chr1 248813542 . G A 149 . DP=24;VDB=0.0216;AF1=1;AC1=2;DP4=2,1,13,8;MQ=41;FQ=-40;PV4=1,9.8e-08,1,1 GT:PL:GQ 1/1:182,13,0:23 chr1 248813650 . CAGAAGAAG CAGAAG 95.5 . INDEL;DP=20;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,1,3,8;MQ=22;FQ=9.94;PV4=0.05,0.087,1,0.38 GT:PL:GQ 0/1:133,0,44:47 chr1 248813723 . C T 99 . DP=19;VDB=0.0380;AF1=0.502;AC1=1;DP4=4,0,10,3;MQ=36;FQ=-6.96;PV4=0.54,1.4e-05,1,1 GT:PL:GQ 0/1:129,0,21:24 chr1 248813901 . A T 220 . DP=57;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,10,16,17;MQ=28;FQ=145;PV4=0.78,0.096,1,1 GT:PL:GQ 0/1:250,0,172:99 chr1 248814052 . T A 116 . DP=87;VDB=0.0271;AF1=0.5;AC1=1;DP4=33,26,12,13;MQ=39;FQ=119;PV4=0.63,9.1e-12,1,1 GT:PL:GQ 0/1:146,0,255:99 chr1 248814080 . A C 185 . DP=114;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,42,64;MQ=42;FQ=-282 GT:PL:GQ 1/1:218,255,0:99 chr1 248814126 . G A 161 . DP=113;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,66,8,20;MQ=44;FQ=164;PV4=0.45,0.12,1,1 GT:PL:GQ 0/1:191,0,255:99 chr1 248814209 . GATAT GAT 83.5 . INDEL;DP=14;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,6,0,6;MQ=51;FQ=86.5;PV4=1,0.16,0.1,0.21 GT:PL:GQ 0/1:121,0,224:99 chr1 248845097 . C T 222 . DP=147;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,74,68;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr1 248845411 . G A 222 . DP=80;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,29,47;MQ=60;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr1 248845458 . C T 222 . DP=69;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,29,39;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr1 248845471 . T C 222 . DP=64;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,27,35;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr1 248845499 . A G 222 . DP=60;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,23,30;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr1 249108640 . C T 56 . DP=19;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,1,11,0;MQ=60;FQ=59;PV4=0.42,2.4e-08,1,1 GT:PL:GQ 0/1:86,0,158:89 chr1 249110906 . G C 26 . DP=17;VDB=0.0033;AF1=0.5;AC1=1;DP4=2,5,2,5;MQ=58;FQ=29;PV4=1,3.8e-08,1,1 GT:PL:GQ 0/1:56,0,159:59 chr1 249145072 . C CA 214 . INDEL;DP=20;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,10,10;MQ=59;FQ=-94.5 GT:PL:GQ 1/1:255,60,0:99 chr1 249148399 . C T 32 . DP=3;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:64,9,0:16 chr2 41647 . A G 19.1 . DP=23;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,9,1,8;MQ=59;FQ=22;PV4=0.36,1.9e-14,0.12,0.38 GT:PL:GQ 0/1:49,0,255:52 chr2 45895 . A G 105 . DP=12;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,7,4;MQ=60;FQ=-60 GT:PL:GQ 1/1:138,33,0:63 chr2 224919 . A G 215 . DP=26;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,6,8,5;MQ=60;FQ=217;PV4=1,0.41,1,0.077 GT:PL:GQ 0/1:245,0,253:99 chr2 224970 . C T 102 . DP=22;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,4,5,7;MQ=60;FQ=105;PV4=0.67,7.8e-08,1,1 GT:PL:GQ 0/1:132,0,212:99 chr2 230912 . A C 52 . DP=23;VDB=0.0066;AF1=0.5;AC1=1;DP4=11,2,8,2;MQ=60;FQ=55;PV4=1,3.7e-11,1,1 GT:PL:GQ 0/1:82,0,220:85 chr2 242732 . taacaacaacaacaacaaca tAACaacaacaacaacaacaaca 217 . INDEL;DP=21;VDB=0.0118;AF1=0.5;AC1=1;DP4=9,0,7,4;MQ=59;FQ=208;PV4=0.094,1,0.19,0.31 GT:PL:GQ 0/1:255,0,243:99 chr2 242793 . G C 225 . DP=41;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,10,9,9;MQ=59;FQ=225;PV4=1,1,0.14,0.49 GT:PL:GQ 0/1:255,0,255:99 chr2 262553 . T C 25 . DP=31;VDB=0.0305;AF1=0.5;AC1=1;DP4=20,1,7,1;MQ=60;FQ=28;PV4=0.48,5.6e-10,1,0.12 GT:PL:GQ 0/1:55,0,216:58 chr2 264019 . C A 40 . DP=6;VDB=0.0206;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=30.8;PV4=1,1,1,0.12 GT:PL:GQ 0/1:70,0,58:61 chr2 264895 . G C 127 . DP=18;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,15,2;MQ=60;FQ=-78 GT:PL:GQ 1/1:160,51,0:99 chr2 271797 . G A 7.8 . DP=6;VDB=0.0020;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=10.4;PV4=1,0.0085,1,0.12 GT:PL:GQ 0/1:37,0,74:39 chr2 272203 . C T 225 . DP=62;VDB=0.0373;AF1=0.5;AC1=1;DP4=9,21,12,18;MQ=60;FQ=225;PV4=0.59,0.0087,0.16,0.02 GT:PL:GQ 0/1:255,0,255:99 chr2 272840 . G A 7.8 . DP=5;VDB=0.0208;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=55;FQ=10.4;PV4=1,0.0046,0.25,1 GT:PL:GQ 0/1:37,0,55:39 chr2 272926 . A G 225 . DP=50;VDB=0.0244;AF1=0.5;AC1=1;DP4=24,4,17,4;MQ=60;FQ=225;PV4=0.71,0.21,1,0.49 GT:PL:GQ 0/1:255,0,255:99 chr2 273070 . A G 80 . DP=37;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,13,3,18;MQ=60;FQ=83;PV4=1,1.6e-17,1,1 GT:PL:GQ 0/1:110,0,215:99 chr2 283231 . ATTTTTTT ATTTTTTTT 34.7 . INDEL;DP=26;VDB=0.0164;AF1=1;AC1=2;DP4=0,4,3,13;MQ=60;FQ=-42.5;PV4=1,1,1,0.49 GT:PL:GQ 1/1:74,8,0:14 chr2 672976 . A G 98 . DP=28;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,16,0,8;MQ=59;FQ=101;PV4=1,1,0.068,1 GT:PL:GQ 0/1:128,0,235:99 chr2 675831 . G T 42 . DP=15;VDB=0.0008;AF1=0.5;AC1=1;DP4=1,6,0,8;MQ=60;FQ=45;PV4=0.47,1.8e-10,1,1 GT:PL:GQ 0/1:72,0,161:75 chr2 676177 . C G 225 . DP=68;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,23,8,32;MQ=59;FQ=225;PV4=1,0.23,0.12,0.3 GT:PL:GQ 0/1:255,0,255:99 chr2 676457 . G C 61 . DP=34;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,32,1;MQ=54;FQ=-126 GT:PL:GQ 1/1:94,99,0:99 chr2 676478 . TGT TGTAAGT 214 . INDEL;DP=52;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,40,9;MQ=50;FQ=-183 GT:PL:GQ 1/1:255,148,0:99 chr2 677213 . G A 23 . DP=3;VDB=0.0156;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:55,9,0:15 chr2 677295 . C T 127 . DP=31;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,5,12,1;MQ=59;FQ=130;PV4=0.36,1,0.12,0.11 GT:PL:GQ 0/1:157,0,252:99 chr2 905393 . C G 47 . DP=16;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,9,1,3;MQ=55;FQ=50;PV4=0.51,0.24,0.032,0.26 GT:PL:GQ 0/1:77,0,183:80 chr2 905399 . T G 4.13 . DP=14;VDB=0.0095;AF1=0.4998;AC1=1;DP4=1,9,0,4;MQ=57;FQ=6.2;PV4=1,2.6e-06,0.19,1 GT:PL:GQ 0/1:32,0,174:31 chr2 1079130 . G A 87 . DP=37;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,4,16,1;MQ=55;FQ=90;PV4=0.34,8.7e-11,0.039,0.4 GT:PL:GQ 0/1:117,0,251:99 chr2 1079132 . G A 129 . DP=38;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,4,16,1;MQ=55;FQ=132;PV4=0.34,0.0012,0.039,0.36 GT:PL:GQ 0/1:159,0,254:99 chr2 1079143 . A G 222 . DP=51;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,41,9;MQ=56;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr2 1079320 . C T 222 . DP=73;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,15,57;MQ=58;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr2 1133367 . G A 225 . DP=37;VDB=0.0140;AF1=0.5;AC1=1;DP4=10,13,6,8;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 1168756 . G A 65 . DP=46;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,19,11,6;MQ=60;FQ=68;PV4=0.062,1.3e-14,1,0.44 GT:PL:GQ 0/1:95,0,255:98 chr2 1241592 . C T 43.3 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:76,15,0:27 chr2 1418192 . C G 127 . DP=42;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,5,19,4;MQ=59;FQ=130;PV4=0.71,2e-11,1,0.14 GT:PL:GQ 0/1:157,0,255:99 chr2 1437410 . C T 215 . DP=28;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,25;MQ=60;FQ=-105 GT:PL:GQ 1/1:248,78,0:99 chr2 1457364 . A G 222 . DP=53;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,30,17;MQ=59;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr2 1459806 . A G 56 . DP=8;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:89,24,0:45 chr2 1460004 . G T 199 . DP=39;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,16,21;MQ=60;FQ=-138 GT:PL:GQ 1/1:232,111,0:99 chr2 1460140 . A G 51 . DP=10;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:84,30,0:57 chr2 1488668 . T C 36 . DP=10;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:69,30,0:56 chr2 1491497 . T C 214 . DP=15;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,13,2;MQ=55;FQ=-72 GT:PL:GQ 1/1:247,45,0:87 chr2 1497442 . A G 86 . DP=10;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:119,30,0:57 chr2 1497803 . C T 158 . DP=36;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,21,3,9;MQ=60;FQ=161;PV4=0.12,0.033,1,0.46 GT:PL:GQ 0/1:188,0,216:99 chr2 1499899 . C T 154 . DP=29;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,8;MQ=59;FQ=-105 GT:PL:GQ 1/1:187,78,0:99 chr2 1499927 . A C 203 . DP=30;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,14;MQ=60;FQ=-111 GT:PL:GQ 1/1:236,84,0:99 chr2 1507598 . G T 25 . DP=24;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,0,8,0;MQ=58;FQ=28;PV4=1,2.9e-06,1,1 GT:PL:GQ 0/1:55,0,159:58 chr2 1520676 . T C 182 . DP=47;VDB=0.0216;AF1=0.5;AC1=1;DP4=23,2,18,2;MQ=60;FQ=166;PV4=1,1,1,0.49 GT:PL:GQ 0/1:212,0,193:99 chr2 1544539 . G T 86 . DP=51;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,16,7,13;MQ=59;FQ=89;PV4=0.77,1.5e-20,1,0.021 GT:PL:GQ 0/1:116,0,255:99 chr2 1544617 . G A 225 . DP=44;VDB=0.0190;AF1=0.5;AC1=1;DP4=11,10,10,12;MQ=59;FQ=225;PV4=0.76,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 1642545 . C G 27.5 . DP=6;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,4,0;MQ=39;FQ=-39 GT:PL:GQ 1/1:60,12,0:21 chr2 1647171 . T C 215 . DP=35;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,27,7;MQ=60;FQ=-129 GT:PL:GQ 1/1:248,102,0:99 chr2 1652822 . T G 222 . DP=44;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,22,20;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr2 1664654 . A G 81 . DP=6;VDB=0.0244;AF1=0.5032;AC1=1;DP4=1,0,5,0;MQ=60;FQ=-8.63;PV4=1,0.42,1,1 GT:PL:GQ 0/1:111,0,19:22 chr2 1667310 . G A 91 . DP=50;VDB=0.0322;AF1=0.5;AC1=1;DP4=21,10,16,3;MQ=59;FQ=94;PV4=0.32,7.5e-16,0.36,1 GT:PL:GQ 0/1:121,0,255:99 chr2 1696510 . AACACACA AACACA 214 . INDEL;DP=23;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,5,17;MQ=60;FQ=-101 GT:PL:GQ 1/1:255,66,0:99 chr2 1813057 . G T 63 . DP=27;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,14,2,10;MQ=58;FQ=66;PV4=0.57,4.1e-15,0.44,0.046 GT:PL:GQ 0/1:93,0,208:96 chr2 1925993 . C T 105 . DP=20;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,19,1;MQ=59;FQ=-87 GT:PL:GQ 1/1:138,60,0:99 chr2 1926437 . G T 178 . DP=123;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,52,64;MQ=60;FQ=-282 GT:PL:GQ 1/1:211,255,0:99 chr2 1946646 . A C 222 . DP=75;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,56,16;MQ=58;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr2 1946914 . A G 222 . DP=56;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,33,18;MQ=59;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr2 1946968 . C T 200 . DP=104;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,53,46;MQ=59;FQ=-282 GT:PL:GQ 1/1:233,255,0:99 chr2 1982915 . GAAAAAAAAA GAAAAAAAA 8.27 . INDEL;DP=67;VDB=0.0380;AF1=0.5128;AC1=1;DP4=7,13,20,19;MQ=60;FQ=-21.6;PV4=0.28,0.24,1,0.14 GT:PL:GQ 0/1:45,0,13:17 chr2 1983374 . A C 83 . DP=42;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,10,9,8;MQ=59;FQ=86;PV4=1,1.5e-14,1,1 GT:PL:GQ 0/1:113,0,255:99 chr2 1983619 . A G 99 . DP=10;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,3,2,4;MQ=57;FQ=36;PV4=0.5,0.32,0.26,0.44 GT:PL:GQ 0/1:129,0,63:66 chr2 3193040 . G A 180 . DP=78;VDB=0.0345;AF1=0.5;AC1=1;DP4=24,10,29,13;MQ=60;FQ=183;PV4=1,1.5e-20,0.19,1 GT:PL:GQ 0/1:210,0,255:99 chr2 3212247 . G T 43 . DP=20;VDB=0.0118;AF1=0.5;AC1=1;DP4=10,1,8,1;MQ=60;FQ=46;PV4=1,8.9e-09,1,0.16 GT:PL:GQ 0/1:73,0,193:76 chr2 3212704 . C A 42 . DP=24;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,13,1,7;MQ=59;FQ=45;PV4=1,4.3e-08,1,0.4 GT:PL:GQ 0/1:72,0,205:75 chr2 3217794 . T C 31.3 . DP=5;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,5,0;MQ=50;FQ=-42 GT:PL:GQ 1/1:64,15,0:27 chr2 3217908 . G C 222 . DP=61;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,43,14;MQ=59;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr2 3277947 . T A 40 . DP=6;VDB=0.0000;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=41.3;PV4=1,0.4,1,0.16 GT:PL:GQ 0/1:70,0,73:71 chr2 3356849 . A G 131 . DP=9;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:164,27,0:51 chr2 3356953 . A T 222 . DP=96;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,73,23;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 3358458 . ATTATGAAGTTAGATTTA ATTA 142 . INDEL;DP=26;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,1,15;MQ=29;FQ=-82.5 GT:PL:GQ 1/1:183,48,0:93 chr2 3392075 . T C 143 . DP=74;VDB=0.0244;AF1=0.5;AC1=1;DP4=16,22,19,15;MQ=59;FQ=146;PV4=0.35,3.1e-17,1,0.075 GT:PL:GQ 0/1:173,0,255:99 chr2 3393565 . c cAA 217 . INDEL;DP=32;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,11,5,11;MQ=59;FQ=217;PV4=1,1,0.17,0.32 GT:PL:GQ 0/1:255,0,255:99 chr2 3425514 . G C 143 . DP=55;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,17,4,29;MQ=60;FQ=146;PV4=0.46,8.3e-13,0.21,1 GT:PL:GQ 0/1:173,0,255:99 chr2 3428508 . T G 34 . DP=25;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,11,0,11;MQ=60;FQ=37;PV4=0.48,1.6e-10,1,1 GT:PL:GQ 0/1:64,0,218:67 chr2 3469278 . C G 16.1 . DP=3;VDB=0.0224;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:48,9,0:15 chr2 3469463 . G C 222 . DP=23;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,9,14;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr2 3470115 . T C 222 . DP=95;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,56,37;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 3470124 . G A 186 . DP=95;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,49,37;MQ=59;FQ=-282 GT:PL:GQ 1/1:219,255,0:99 chr2 3470186 . G C 222 . DP=77;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,31,42;MQ=60;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr2 3470254 . T G 222 . DP=44;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,5,36;MQ=60;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr2 3481637 . T C 202 . DP=21;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,11,10;MQ=60;FQ=-90 GT:PL:GQ 1/1:235,63,0:99 chr2 3481659 . G A 222 . DP=16;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,6,9;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr2 3481716 . T C 134 . DP=6;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:167,18,0:33 chr2 3482796 . T G 212 . DP=23;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,3,14;MQ=60;FQ=-78 GT:PL:GQ 1/1:245,51,0:99 chr2 3483205 . C T 197 . DP=61;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,10,48;MQ=60;FQ=-202 GT:PL:GQ 1/1:230,175,0:99 chr2 3483390 . T G 14.9 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:46,6,0:10 chr2 3488502 . A G 222 . DP=77;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,51,22;MQ=60;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr2 3502709 . A G 7.8 . DP=7;VDB=0.0215;AF1=0.5;AC1=1;DP4=4,0,2,0;MQ=60;FQ=10.4;PV4=1,0.0021,1,0.31 GT:PL:GQ 0/1:37,0,107:39 chr2 3502909 . A ACTT 214 . INDEL;DP=36;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,11,24;MQ=54;FQ=-140 GT:PL:GQ 1/1:255,105,0:99 chr2 3502932 . G A 136 . DP=24;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,10,1,9;MQ=59;FQ=139;PV4=0.36,0.055,0.12,0.31 GT:PL:GQ 0/1:166,0,255:99 chr2 3504290 . GTGTACCTGCCGCCGCATGTACCTGCCGCCGC GTGTACCTGCCGCCGC 48 . INDEL;DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,4,0;MQ=29;FQ=-46.5 GT:PL:GQ 1/1:88,12,0:21 chr2 3504687 . A G 222 . DP=101;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,53,44;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 3504819 . A G 222 . DP=56;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,11,40;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr2 3504893 . GAAA GAAAA 48 . INDEL;DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:88,12,0:21 chr2 3523324 . A G 88 . DP=5;VDB=0.0180;AF1=0.5025;AC1=1;DP4=0,1,2,2;MQ=60;FQ=-7.78;PV4=1,1,1,1 GT:PL:GQ 0/1:118,0,20:23 chr2 3579760 . T C 56 . DP=41;VDB=0.0099;AF1=0.5;AC1=1;DP4=17,2,18,1;MQ=58;FQ=59;PV4=1,1.8e-22,1,1 GT:PL:GQ 0/1:86,0,234:89 chr2 3593384 . C T 172 . DP=159;VDB=0.0380;AF1=0.5;AC1=1;DP4=44,27,40,41;MQ=60;FQ=175;PV4=0.14,3.1e-42,1,1 GT:PL:GQ 0/1:202,0,255:99 chr2 3597974 . T C 30 . DP=9;VDB=0.0006;AF1=0.5;AC1=1;DP4=2,0,7,0;MQ=60;FQ=18.9;PV4=1,8.3e-07,1,0.3 GT:PL:GQ 0/1:60,0,46:49 chr2 3600012 . CCTCTCT CCT 83.5 . INDEL;DP=10;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,6,0,4;MQ=55;FQ=86.5;PV4=1,0.099,0.03,1 GT:PL:GQ 0/1:121,0,214:99 chr2 3605468 . A G 222 . DP=61;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,44;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr2 3605528 . T G 14.2 . DP=24;VDB=0.0373;AF1=0.5;AC1=1;DP4=4,12,0,7;MQ=59;FQ=17.1;PV4=0.27,4e-06,1,1 GT:PL:GQ 0/1:44,0,254:47 chr2 3605538 . A C 16.1 . DP=19;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,9,0,6;MQ=59;FQ=19.1;PV4=0.26,0.0026,1,1 GT:PL:GQ 0/1:46,0,228:49 chr2 3627648 . G C 178 . DP=48;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,16,30;MQ=60;FQ=-165 GT:PL:GQ 1/1:211,138,0:99 chr2 3652616 . G C 225 . DP=39;VDB=0.0271;AF1=0.5;AC1=1;DP4=14,8,7,9;MQ=60;FQ=225;PV4=0.32,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 3653576 . A G 45 . DP=8;VDB=0.0133;AF1=0.5;AC1=1;DP4=5,0,3,0;MQ=57;FQ=48;PV4=1,1,1,1 GT:PL:GQ 0/1:75,0,112:78 chr2 3653844 . T C 48 . DP=20;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,8,1,8;MQ=59;FQ=51;PV4=0.59,7.7e-07,0.14,0.46 GT:PL:GQ 0/1:78,0,207:81 chr2 3685046 . T C 18.1 . DP=17;VDB=0.0066;AF1=0.5;AC1=1;DP4=9,1,7,0;MQ=59;FQ=21;PV4=1,2.5e-08,0.12,0.43 GT:PL:GQ 0/1:48,0,187:51 chr2 3685074 . A G 145 . DP=29;VDB=0.0164;AF1=0.5;AC1=1;DP4=14,2,11,1;MQ=59;FQ=148;PV4=1,0.33,0.13,1 GT:PL:GQ 0/1:175,0,222:99 chr2 3774436 . C T 69 . DP=14;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:102,39,0:75 chr2 3774519 . T C 222 . DP=49;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,33,14;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr2 3800383 . C T 222 . DP=106;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,47,56;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 3800496 . C T 222 . DP=70;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,48;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr2 3815250 . A G 86 . DP=21;VDB=0.0140;AF1=0.5;AC1=1;DP4=10,3,4,4;MQ=60;FQ=89;PV4=0.35,0.0001,1,1 GT:PL:GQ 0/1:116,0,229:99 chr2 3826324 . C T 107 . DP=30;VDB=0.0140;AF1=0.5;AC1=1;DP4=10,0,18,2;MQ=58;FQ=103;PV4=0.54,1.4e-13,0.16,1 GT:PL:GQ 0/1:137,0,131:99 chr2 3826387 . T C 225 . DP=87;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,7,32,20;MQ=59;FQ=225;PV4=0.15,1,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr2 3826597 . G A 155 . DP=53;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,23,1,20;MQ=60;FQ=158;PV4=0.067,1,0.11,0.37 GT:PL:GQ 0/1:185,0,255:99 chr2 4135981 . C T 215 . DP=29;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,16,13;MQ=59;FQ=-114 GT:PL:GQ 1/1:248,87,0:99 chr2 4136145 . A G 105 . DP=5;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:138,15,0:27 chr2 7001249 . acacacacacccacacac acacacac 84.5 . INDEL;DP=29;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,8,0;MQ=29;FQ=-58.5 GT:PL:GQ 1/1:125,24,0:45 chr2 7005069 . C T 101 . DP=9;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,2;MQ=60;FQ=-51 GT:PL:GQ 1/1:134,24,0:45 chr2 7005369 . A G 189 . DP=14;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,6,8;MQ=60;FQ=-69 GT:PL:GQ 1/1:222,42,0:81 chr2 7017903 . A G 68 . DP=19;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,18,0;MQ=60;FQ=-81 GT:PL:GQ 1/1:101,54,0:99 chr2 7019079 . A G 222 . DP=59;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,36,22;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr2 7027323 . T A 146 . DP=68;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,13,48;MQ=60;FQ=-211 GT:PL:GQ 1/1:179,184,0:99 chr2 7050426 . G C 166 . DP=121;VDB=0.0345;AF1=0.5;AC1=1;DP4=23,44,18,35;MQ=59;FQ=169;PV4=1,6.7e-28,0.001,1 GT:PL:GQ 0/1:196,0,255:99 chr2 7050483 . Atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt ATGTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 197 . INDEL;DP=59;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,7,1,10;MQ=55;FQ=127;PV4=1,1,0.039,1 GT:PL:GQ 0/1:235,0,162:99 chr2 7076975 . Agtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt AGTGTgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 111 . INDEL;DP=3;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:151,9,0:16 chr2 7130521 . A G 3.98 . DP=9;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,0,2;MQ=44;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr2 7137067 . A G 97 . DP=21;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,20,0;MQ=59;FQ=-87 GT:PL:GQ 1/1:130,60,0:99 chr2 7154632 . T C 222 . DP=81;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,47,32;MQ=60;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr2 7154826 . ATTTTTTTTT ATTTTTTTT,ATTTTTTTTTT,ATTTTTTT 24.5 . INDEL;DP=73;VDB=0.0365;AF1=1;AC1=2;DP4=0,1,19,44;MQ=59;FQ=-131;PV4=1,1,0.43,0.26 GT:PL:GQ 1/1:97,128,32,118,0,51,95,123,113,92:99 chr2 7164483 . C T 186 . DP=36;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,3,19,2;MQ=59;FQ=189;PV4=0.63,0.072,0.12,1 GT:PL:GQ 0/1:216,0,235:99 chr2 7170388 . Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 15.6 . INDEL;DP=41;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=43;FQ=18.5;PV4=1,1,0,1 GT:PL:GQ 0/1:53,0,108:56 chr2 7208324 . G T 150 . DP=68;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,14,11,24;MQ=60;FQ=153;PV4=0.051,9.8e-31,1,0.47 GT:PL:GQ 0/1:180,0,255:99 chr2 7208422 . T C 186 . DP=35;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,19,3,10;MQ=60;FQ=189;PV4=0.35,1,1,0.26 GT:PL:GQ 0/1:216,0,239:99 chr2 7230011 . A C 142 . DP=41;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,20,3,8;MQ=59;FQ=145;PV4=1,0.29,1,0.43 GT:PL:GQ 0/1:172,0,255:99 chr2 7243449 . agtgtgtgtgtgtgtgtgtgtgt agtgtgtgtgtgtgtgt 64.5 . INDEL;DP=47;VDB=0.0190;AF1=0.5;AC1=1;DP4=21,8,15,3;MQ=51;FQ=67.5;PV4=0.49,1,2.5e-15,1 GT:PL:GQ 0/1:102,0,255:99 chr2 7386192 . T C 225 . DP=81;VDB=0.0140;AF1=0.5;AC1=1;DP4=32,2,37,6;MQ=60;FQ=185;PV4=0.29,0.43,1,1 GT:PL:GQ 0/1:255,0,212:99 chr2 7403641 . tacacacacacacacacacacaca tACACACacacacacacacacacacacaca 112 . INDEL;DP=31;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,6,4,1;MQ=59;FQ=115;PV4=0.61,0.092,0.041,0.17 GT:PL:GQ 0/1:150,0,255:99 chr2 7409989 . Ttgtgtgtgtgtgtgtgtgtg Ttgtgtgtgtgtgtgtgtg 217 . INDEL;DP=79;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,18,4,30;MQ=60;FQ=217;PV4=0.29,0.4,1,0.36 GT:PL:GQ 0/1:255,0,255:99 chr2 7421557 . C G 63.1 . DP=6;VDB=0.0001;AF1=0.5064;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-11.3;PV4=1,1,1,1 GT:PL:GQ 0/1:93,0,16:19 chr2 7421569 . Ctgtgtgtgtgtgtgtgtgtctgtgtgtgcgtgtgtgtgtctgtgtgtgtgtgt CTGtgtgtgtgtgtgtgtgtgtctgtgtgtgcgtgtgtgtgtctgtgtgtgtgtgt 66.5 . INDEL;DP=12;VDB=0.0003;AF1=0.5;AC1=1;DP4=9,0,3,0;MQ=60;FQ=69.5;PV4=1,1,1,0.092 GT:PL:GQ 0/1:104,0,176:99 chr2 7471480 . tcacacacacacacacacacacacacacacacacaca tCTCAcacacacacacacacacacacacacacacacacaca 74.5 . INDEL;DP=9;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,2,3,1;MQ=60;FQ=6.56;PV4=0.4,1,1,1 GT:PL:GQ 0/1:112,0,40:43 chr2 7540646 . CAA CAAA 214 . INDEL;DP=19;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,11,8;MQ=60;FQ=-91.5 GT:PL:GQ 1/1:255,57,0:99 chr2 7540695 . C G 222 . DP=20;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,6,13;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr2 7540784 . T C 110 . DP=6;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:143,18,0:33 chr2 7594516 . G A 222 . DP=122;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,84,26;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 7594520 . C T 225 . DP=130;VDB=0.0392;AF1=0.5;AC1=1;DP4=46,16,46,21;MQ=59;FQ=225;PV4=0.56,0.024,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 8178735 . A G 222 . DP=55;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,27,27;MQ=59;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr2 8178798 . C T 219 . DP=43;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,10,29;MQ=59;FQ=-144 GT:PL:GQ 1/1:252,117,0:99 chr2 8870814 . A G 113 . DP=68;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,35,7;MQ=59;FQ=-153 GT:PL:GQ 1/1:146,126,0:99 chr2 8877042 . G A 152 . DP=67;VDB=0.0380;AF1=0.5;AC1=1;DP4=29,7,21,9;MQ=60;FQ=155;PV4=0.39,5e-17,1,1 GT:PL:GQ 0/1:182,0,255:99 chr2 8887180 . A G 13.2 . DP=8;VDB=0.0180;AF1=0.5;AC1=1;DP4=3,1,4,0;MQ=60;FQ=16.1;PV4=1,0.0015,1,1 GT:PL:GQ 0/1:43,0,92:46 chr2 8887426 . A G 133 . DP=27;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,14,1,9;MQ=60;FQ=136;PV4=1,1,1,0.32 GT:PL:GQ 0/1:163,0,222:99 chr2 8910987 . A T 80 . DP=39;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,2,9;MQ=53;FQ=-60 GT:PL:GQ 1/1:113,33,0:63 chr2 8911010 . T C 163 . DP=27;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,9,1,16;MQ=59;FQ=133;PV4=1,0.095,0.23,0.4 GT:PL:GQ 0/1:193,0,160:99 chr2 8916847 . A T 51.1 . DP=7;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:84,18,0:33 chr2 9419411 . G A 205 . DP=71;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,49,21;MQ=59;FQ=-238 GT:PL:GQ 1/1:238,211,0:99 chr2 9419415 . C T 214 . DP=75;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,12,25,10;MQ=59;FQ=217;PV4=1,1.2e-10,0.46,1 GT:PL:GQ 0/1:244,0,255:99 chr2 9458460 . A G 45 . DP=7;VDB=0.0027;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=43.9;PV4=1,1,1,1 GT:PL:GQ 0/1:75,0,73:74 chr2 9463454 . C T 94 . DP=61;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,30,3,22;MQ=60;FQ=97;PV4=1,6.4e-14,1,1 GT:PL:GQ 0/1:124,0,255:99 chr2 9467815 . C T 111 . DP=18;VDB=0.0190;AF1=0.5;AC1=1;DP4=7,0,10,0;MQ=60;FQ=97.9;PV4=1,0.13,1,0.41 GT:PL:GQ 0/1:141,0,125:99 chr2 9475337 . A G 162 . DP=74;VDB=0.0393;AF1=0.5;AC1=1;DP4=26,14,15,18;MQ=60;FQ=165;PV4=0.1,1.8e-19,1,0.17 GT:PL:GQ 0/1:192,0,255:99 chr2 9484542 . C T 22.3 . DP=6;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:55,15,0:26 chr2 9484561 . TAAAAAAAAAA TAAAAAA 139 . INDEL;DP=12;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,12,0;MQ=45;FQ=-70.5 GT:PL:GQ 1/1:180,36,0:69 chr2 9491017 . C T 174 . DP=40;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,4,33;MQ=60;FQ=-138 GT:PL:GQ 1/1:207,111,0:99 chr2 9496291 . T C 222 . DP=126;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,65,61;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 9520959 . C T 195 . DP=32;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,11,2,14;MQ=60;FQ=198;PV4=0.64,0.24,1,0.41 GT:PL:GQ 0/1:225,0,238:99 chr2 9528536 . G C 222 . DP=60;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,37,20;MQ=59;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr2 9528801 . T C 3.01 . DP=9;VDB=0.0141;AF1=0.4997;AC1=1;DP4=0,6,0,3;MQ=60;FQ=4.77;PV4=1,0.0077,1,1 GT:PL:GQ 0/1:30,0,122:28 chr2 9540849 . C T 184 . DP=58;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,10,16,14;MQ=59;FQ=187;PV4=0.79,7.1e-13,0.1,1 GT:PL:GQ 0/1:214,0,255:99 chr2 9547171 . G A 161 . DP=29;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,4,24;MQ=60;FQ=-111 GT:PL:GQ 1/1:194,84,0:99 chr2 9548331 . C A 16.1 . DP=10;VDB=0.0069;AF1=0.5;AC1=1;DP4=6,2,1,1;MQ=60;FQ=19.1;PV4=1,1,1,0.23 GT:PL:GQ 0/1:46,0,192:49 chr2 9552379 . C T 89 . DP=32;VDB=0.0004;AF1=0.5;AC1=1;DP4=20,2,10,0;MQ=59;FQ=92;PV4=1,0.15,0.28,0.012 GT:PL:GQ 0/1:119,0,235:99 chr2 9554255 . G A 170 . DP=14;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:203,42,0:81 chr2 9554280 . A T 59 . DP=33;VDB=0.0099;AF1=0.5;AC1=1;DP4=16,0,17,0;MQ=59;FQ=62;PV4=1,4e-14,0.17,1 GT:PL:GQ 0/1:89,0,175:92 chr2 9554461 . C A 208 . DP=86;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,67;MQ=59;FQ=-280 GT:PL:GQ 1/1:241,253,0:99 chr2 9569972 . A T 194 . DP=54;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,47,6;MQ=60;FQ=-187 GT:PL:GQ 1/1:227,160,0:99 chr2 9571054 . C T 36 . DP=3;VDB=0.0159;AF1=0.5003;AC1=1;DP4=0,1,0,2;MQ=60;FQ=4.13;PV4=1,1,1,1 GT:PL:GQ 0/1:66,0,29:32 chr2 9576553 . T C 159 . DP=8;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:192,24,0:45 chr2 9580540 . GTT GTTT 107 . INDEL;DP=6;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:147,18,0:33 chr2 9583822 . AGGG AGGGG 217 . INDEL;DP=104;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,37,15,25;MQ=60;FQ=217;PV4=0.51,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 9583922 . A G 174 . DP=18;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81 GT:PL:GQ 1/1:207,54,0:99 chr2 9616035 . A G 73.1 . DP=6;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,5,1;MQ=56;FQ=-45 GT:PL:GQ 1/1:106,18,0:33 chr2 9616301 . TAGGAG TAG 144 . INDEL;DP=5;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:184,12,0:21 chr2 9630231 . C T 30.8 . DP=2;VDB=0.0129;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:62,6,0:10 chr2 9630244 . ATTT ATT 52.4 . INDEL;DP=3;VDB=0.0215;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:92,9,0:16 chr2 9631340 . T C 92 . DP=22;VDB=0.0393;AF1=0.5;AC1=1;DP4=1,7,4,9;MQ=59;FQ=95;PV4=0.61,5.4e-07,0.22,1 GT:PL:GQ 0/1:122,0,141:99 chr2 9633137 . T G 203 . DP=39;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,12,27;MQ=59;FQ=-144 GT:PL:GQ 1/1:236,117,0:99 chr2 9634856 . A G 222 . DP=79;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,34,40;MQ=60;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr2 9637403 . A G 73 . DP=58;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,19,5,22;MQ=60;FQ=76;PV4=0.23,1.8e-19,1,1 GT:PL:GQ 0/1:103,0,255:99 chr2 9642478 . C T 47 . DP=8;VDB=0.0199;AF1=0.5;AC1=1;DP4=0,5,0,3;MQ=60;FQ=50;PV4=1,1,1,1 GT:PL:GQ 0/1:77,0,113:80 chr2 9650350 . CTT C 49.5 . INDEL;DP=15;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,8,0,7;MQ=52;FQ=52.5;PV4=1,1,0.00056,0.14 GT:PL:GQ 0/1:87,0,231:90 chr2 9661184 . T C 180 . DP=20;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,18,0;MQ=60;FQ=-81 GT:PL:GQ 1/1:213,54,0:99 chr2 9661450 . A G 225 . DP=82;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,39,4,32;MQ=58;FQ=225;PV4=1,0.35,1,0.41 GT:PL:GQ 0/1:255,0,255:99 chr2 9981672 . T C 60 . DP=12;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,12,0;MQ=58;FQ=-63 GT:PL:GQ 1/1:93,36,0:69 chr2 9983529 . G A 39.1 . DP=23;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,6,0;MQ=56;FQ=-45 GT:PL:GQ 1/1:72,18,0:33 chr2 9983530 . C A 57.1 . DP=23;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,7,0;MQ=57;FQ=-48 GT:PL:GQ 1/1:90,21,0:39 chr2 9983582 . C G 206 . DP=24;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,7,16;MQ=58;FQ=-96 GT:PL:GQ 1/1:239,69,0:99 chr2 9983591 . AG AGG 214 . INDEL;DP=26;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,6,19;MQ=59;FQ=-110 GT:PL:GQ 1/1:255,75,0:99 chr2 9983704 . A G 136 . DP=8;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,1,6;MQ=57;FQ=-48 GT:PL:GQ 1/1:169,21,0:39 chr2 9983716 . A C 61.3 . DP=6;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:94,15,0:27 chr2 9985247 . A T 112 . DP=41;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,33,7;MQ=59;FQ=-147 GT:PL:GQ 1/1:145,120,0:99 chr2 9989442 . A G 65 . DP=25;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,4,4;MQ=60;FQ=-51 GT:PL:GQ 1/1:98,24,0:45 chr2 10008872 . A G 80 . DP=46;VDB=0.0298;AF1=1;AC1=2;DP4=0,1,6,36;MQ=60;FQ=-118;PV4=1,7.1e-10,1,0.49 GT:PL:GQ 1/1:113,91,0:99 chr2 10044941 . G T 52 . DP=14;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:85,39,0:75 chr2 10045014 . C T 222 . DP=68;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,53,9;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr2 10045024 . G A 222 . DP=76;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,60,11;MQ=60;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr2 10045147 . A G 222 . DP=85;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,66;MQ=60;FQ=-277 GT:PL:GQ 1/1:255,250,0:99 chr2 10050947 . T C 205 . DP=31;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,17;MQ=60;FQ=-114 GT:PL:GQ 1/1:238,87,0:99 chr2 10050960 . A G 137 . DP=30;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,21;MQ=60;FQ=-117 GT:PL:GQ 1/1:170,90,0:99 chr2 10051053 . G C 76 . DP=10;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:109,30,0:57 chr2 10053412 . C T 155 . DP=140;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,52,87;MQ=60;FQ=-282 GT:PL:GQ 1/1:188,255,0:99 chr2 10059097 . A C 222 . DP=114;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,74,39;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 10059770 . G T 222 . DP=55;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,39,14;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr2 10186419 . A G 139 . DP=48;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,10,17,6;MQ=60;FQ=142;PV4=0.22,1.7e-18,1,1 GT:PL:GQ 0/1:169,0,255:99 chr2 10188649 . A T 197 . DP=49;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,12,35;MQ=59;FQ=-168 GT:PL:GQ 1/1:230,141,0:99 chr2 10225241 . C T 142 . DP=22;VDB=0.0140;AF1=0.5;AC1=1;DP4=8,1,13,0;MQ=60;FQ=140;PV4=0.41,0.47,1,0.075 GT:PL:GQ 0/1:172,0,169:99 chr2 10226306 . GC GCC 217 . INDEL;DP=38;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,14,6,14;MQ=60;FQ=173;PV4=0.46,1,1,0.11 GT:PL:GQ 0/1:255,0,208:99 chr2 10262859 . G A 137 . DP=76;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,21,14,24;MQ=59;FQ=140;PV4=1,4e-15,0.093,0.11 GT:PL:GQ 0/1:167,0,255:99 chr2 10262920 . T G 222 . DP=35;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,7,26;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr2 10264057 . T C 222 . DP=135;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,31,96;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 10282147 . T C 143 . DP=86;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,46;MQ=60;FQ=-244 GT:PL:GQ 1/1:176,217,0:99 chr2 10580967 . G A 14.2 . DP=16;VDB=0.0099;AF1=0.5;AC1=1;DP4=5,6,3,2;MQ=57;FQ=17.1;PV4=1,0.00081,0.32,1 GT:PL:GQ 0/1:44,0,219:47 chr2 10584022 . T C 103 . DP=84;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,33,3,40;MQ=59;FQ=106;PV4=0.3,5.9e-25,1,1 GT:PL:GQ 0/1:133,0,255:99 chr2 10595534 . T C 114 . DP=41;VDB=0.0384;AF1=0.5;AC1=1;DP4=5,11,7,12;MQ=60;FQ=117;PV4=1,1.3e-12,1,0.29 GT:PL:GQ 0/1:144,0,255:99 chr2 10717714 . G C 141 . DP=46;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,39,6;MQ=59;FQ=-162 GT:PL:GQ 1/1:174,135,0:99 chr2 10729897 . C T 222 . DP=18;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,2,16;MQ=59;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr2 10743153 . C T 222 . DP=49;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,39,7;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr2 10743191 . G A 222 . DP=71;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,58,10;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr2 10747271 . A G 20 . DP=4;VDB=0.0059;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:52,9,0:15 chr2 10762302 . TAA TA 214 . INDEL;DP=39;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,27;MQ=59;FQ=-152 GT:PL:GQ 1/1:255,117,0:99 chr2 10808776 . C CAA 214 . INDEL;DP=23;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,11,12;MQ=60;FQ=-104 GT:PL:GQ 1/1:255,69,0:99 chr2 10813782 . T C 137 . DP=11;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:170,30,0:57 chr2 10815833 . A G 61.1 . DP=7;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:94,21,0:39 chr2 10908893 . A G 222 . DP=32;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,15,16;MQ=59;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr2 10911891 . T C 119 . DP=7;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:152,21,0:39 chr2 10915020 . A G 210 . DP=53;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,27,22;MQ=59;FQ=-175 GT:PL:GQ 1/1:243,148,0:99 chr2 10922516 . A C 82 . DP=25;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,1,21;MQ=60;FQ=-93 GT:PL:GQ 1/1:115,66,0:99 chr2 10924524 . T C 131 . DP=8;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:164,24,0:45 chr2 10927345 . T C 161 . DP=14;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,13,0;MQ=58;FQ=-66 GT:PL:GQ 1/1:194,39,0:75 chr2 10928710 . A C 48.1 . DP=8;VDB=0.0002;AF1=1;AC1=2;DP4=1,0,7,0;MQ=57;FQ=-32;PV4=1,1,1,1 GT:PL:GQ 1/1:79,5,0:9 chr2 10928777 . A C 222 . DP=45;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,31,14;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr2 10928906 . T C 222 . DP=55;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,23,30;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr2 10928962 . A G 138 . DP=61;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,35,24;MQ=59;FQ=-205 GT:PL:GQ 1/1:171,178,0:99 chr2 10929133 . A G 62.1 . DP=7;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:95,18,0:33 chr2 10929867 . T C 222 . DP=62;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,40,20;MQ=59;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr2 10930050 . A T 52 . DP=23;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,21;MQ=60;FQ=-90 GT:PL:GQ 1/1:85,63,0:99 chr2 10930903 . T C 197 . DP=92;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,71;MQ=60;FQ=-280 GT:PL:GQ 1/1:230,253,0:99 chr2 10931001 . A G 14.9 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:46,6,0:10 chr2 10932082 . T C 102 . DP=25;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,25;MQ=60;FQ=-102 GT:PL:GQ 1/1:135,75,0:99 chr2 10933249 . C T 204 . DP=83;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,47;MQ=58;FQ=-250 GT:PL:GQ 1/1:237,223,0:99 chr2 10933346 . TAGGC TAGGCAGGC 192 . INDEL;DP=14;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,10;MQ=47;FQ=-64.5 GT:PL:GQ 1/1:233,30,0:57 chr2 10937037 . T G 43.1 . DP=8;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:76,21,0:39 chr2 10937065 . T C 154 . DP=13;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:187,33,0:63 chr2 10937409 . C T 107 . DP=6;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:140,18,0:33 chr2 10942687 . C T 201 . DP=79;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,56,23;MQ=60;FQ=-265 GT:PL:GQ 1/1:234,238,0:99 chr2 10950284 . G C 222 . DP=50;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,40,9;MQ=59;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr2 10952790 . T C 208 . DP=18;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,10,8;MQ=59;FQ=-81 GT:PL:GQ 1/1:241,54,0:99 chr2 10960883 . G A 86 . DP=32;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,4,7,4;MQ=59;FQ=89;PV4=0.68,2.6e-08,0.12,0.23 GT:PL:GQ 0/1:116,0,238:99 chr2 10961184 . A G 23 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:55,9,0:15 chr2 10987801 . G A 9.52 . DP=13;VDB=0.0393;AF1=0.5;AC1=1;DP4=0,8,0,4;MQ=60;FQ=12.3;PV4=1,6.7e-05,1,1 GT:PL:GQ 0/1:39,0,145:41 chr2 10994418 . T C 41 . DP=4;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:73,9,0:16 chr2 11053020 . A G 218 . DP=32;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,9,21;MQ=59;FQ=-117 GT:PL:GQ 1/1:251,90,0:99 chr2 11053740 . C T 158 . DP=59;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,15,16,13;MQ=60;FQ=161;PV4=0.8,4e-15,0.16,1 GT:PL:GQ 0/1:188,0,255:99 chr2 11264830 . G A 164 . DP=74;VDB=0.0322;AF1=0.5;AC1=1;DP4=23,17,24,9;MQ=60;FQ=167;PV4=0.22,1.5e-21,1,1 GT:PL:GQ 0/1:194,0,255:99 chr2 11273407 . GTCTCTCTCTCTCTCTCTCT GTCTCTCTCTCTCTCTCTCTCT 65.5 . INDEL;DP=17;VDB=0.0164;AF1=0.5;AC1=1;DP4=8,1,6,1;MQ=60;FQ=68.5;PV4=1,1,1,1 GT:PL:GQ 0/1:103,0,197:99 chr2 11295867 . G C 25.1 . DP=5;VDB=0.0288;AF1=0.5129;AC1=1;DP4=0,1,1,3;MQ=60;FQ=-14.2;PV4=1,0.049,1,0.3 GT:PL:GQ 0/1:55,0,13:16 chr2 11300732 . C T 222 . DP=87;VDB=0.0399;AF1=1;AC1=2;DP4=0,1,32,47;MQ=59;FQ=-239;PV4=1,7.4e-06,1,0.22 GT:PL:GQ 1/1:255,212,0:99 chr2 11300869 . T C 222 . DP=55;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,8,42;MQ=58;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr2 11300926 . CTaaaa C 11.8 . INDEL;DP=10;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,3,0,2;MQ=56;FQ=14.6;PV4=1,1,0.089,1 GT:PL:GQ 0/1:49,0,113:51 chr2 11312181 . G A 124 . DP=29;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,1,27;MQ=58;FQ=-93;PV4=1,1,1,0.17 GT:PL:GQ 1/1:157,66,0:99 chr2 11312224 . C T 178 . DP=10;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,9;MQ=60;FQ=-57 GT:PL:GQ 1/1:211,30,0:57 chr2 11348609 . CAAATAAA CAAA 214 . INDEL;DP=9;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,7;MQ=57;FQ=-58.5 GT:PL:GQ 1/1:255,24,0:45 chr2 11356190 . G A 222 . DP=13;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,3;MQ=60;FQ=-63 GT:PL:GQ 1/1:255,36,0:69 chr2 11359031 . G T 51.3 . DP=6;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:84,15,0:27 chr2 11359120 . G T 58.1 . DP=7;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:91,21,0:39 chr2 11586706 . T C 173 . DP=98;VDB=0.0345;AF1=0.5;AC1=1;DP4=24,21,29,22;MQ=57;FQ=176;PV4=0.84,7.7e-40,0.13,1 GT:PL:GQ 0/1:203,0,255:99 chr2 11587981 . G A 12 . DP=2;VDB=0.0076;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr2 11595648 . C T 40 . DP=13;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,4,0,8;MQ=60;FQ=43;PV4=0.38,1.8e-09,1,1 GT:PL:GQ 0/1:70,0,116:73 chr2 11597151 . A T 104 . DP=10;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,1,6,0;MQ=60;FQ=81;PV4=0.4,1,1,1 GT:PL:GQ 0/1:134,0,108:99 chr2 11598555 . T C 225 . DP=33;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,8,5,14;MQ=60;FQ=211;PV4=0.7,0.16,1,1 GT:PL:GQ 0/1:255,0,238:99 chr2 11680896 . CAAA CA 214 . INDEL;DP=15;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,9;MQ=60;FQ=-67.5 GT:PL:GQ 1/1:255,33,0:63 chr2 11702661 . A C 55 . DP=33;VDB=0.0393;AF1=0.5;AC1=1;DP4=5,8,8,6;MQ=60;FQ=58;PV4=0.45,1.1e-10,1,1 GT:PL:GQ 0/1:85,0,218:88 chr2 11718591 . C T 37 . DP=21;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,11,0,8;MQ=60;FQ=40;PV4=1,7e-11,1,1 GT:PL:GQ 0/1:67,0,202:70 chr2 11720986 . G A 92 . DP=28;VDB=0.0359;AF1=0.5;AC1=1;DP4=1,11,5,9;MQ=60;FQ=95;PV4=0.17,1e-10,1,1 GT:PL:GQ 0/1:122,0,184:99 chr2 11725241 . G A 134 . DP=67;VDB=0.0190;AF1=0.5;AC1=1;DP4=20,21,14,12;MQ=60;FQ=137;PV4=0.8,1.2e-17,1,0.31 GT:PL:GQ 0/1:164,0,255:99 chr2 11725947 . T C 29 . DP=9;VDB=0.0373;AF1=0.5001;AC1=1;DP4=2,0,3,2;MQ=60;FQ=8.64;PV4=1,0.0032,1,1 GT:PL:GQ 0/1:59,0,35:38 chr2 11726061 . GA GAA 24.5 . INDEL;DP=4;VDB=0.0329;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=54;FQ=12.6;PV4=1,1,1,0.21 GT:PL:GQ 0/1:62,0,47:50 chr2 11727393 . TG T 217 . INDEL;DP=61;VDB=0.0399;AF1=0.5;AC1=1;DP4=29,7,19,6;MQ=59;FQ=217;PV4=0.76,0.0035,1,0.41 GT:PL:GQ 0/1:255,0,255:99 chr2 11727507 . G A 222 . DP=95;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,29,63;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 11729096 . G A 63 . DP=16;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,7,1,8;MQ=60;FQ=66;PV4=1,6e-06,1,1 GT:PL:GQ 0/1:93,0,125:96 chr2 11731774 . T G 39.8 . DP=2;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:71,6,0:10 chr2 11736305 . G A 225 . DP=61;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,18,11,24;MQ=59;FQ=225;PV4=1,0.31,0.11,1 GT:PL:GQ 0/1:255,0,255:99 chr2 11738091 . T C 222 . DP=94;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,31,60;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 11738765 . C T 173 . DP=11;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:206,30,0:57 chr2 11741157 . A G 9.52 . DP=7;VDB=0.0183;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=12.3;PV4=1,2.3e-05,1,0.21 GT:PL:GQ 0/1:39,0,106:41 chr2 11752635 . T C 174 . DP=13;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,7;MQ=60;FQ=-66 GT:PL:GQ 1/1:207,39,0:75 chr2 11757009 . A G 141 . DP=9;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:174,27,0:51 chr2 11757023 . C T 32.5 . DP=4;VDB=0.0082;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:65,12,0:21 chr2 11767295 . C G 26 . DP=4;VDB=0.0192;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=26;PV4=1,1,1,1 GT:PL:GQ 0/1:56,0,56:56 chr2 11774324 . G A 182 . DP=57;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,10,18,13;MQ=60;FQ=185;PV4=1,8.3e-09,1,1 GT:PL:GQ 0/1:212,0,255:99 chr2 11780704 . A G 18.1 . DP=14;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,10,0,4;MQ=60;FQ=21;PV4=1,0.00045,1,1 GT:PL:GQ 0/1:48,0,162:51 chr2 11810095 . G A 222 . DP=13;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,8,4;MQ=60;FQ=-63 GT:PL:GQ 1/1:255,36,0:69 chr2 11817812 . G C 225 . DP=45;VDB=0.0244;AF1=0.5;AC1=1;DP4=19,4,9,11;MQ=59;FQ=225;PV4=0.013,0.0021,1,0.093 GT:PL:GQ 0/1:255,0,255:99 chr2 11853913 . G A 45 . DP=14;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,2,7,2;MQ=60;FQ=48;PV4=0.58,3.9e-07,1,1 GT:PL:GQ 0/1:75,0,127:78 chr2 11853963 . C T 65 . DP=19;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,3,5,3;MQ=60;FQ=68;PV4=1,2.1e-10,1,0.33 GT:PL:GQ 0/1:95,0,219:98 chr2 11853964 . G A 188 . DP=19;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,3,7,3;MQ=60;FQ=166;PV4=1,0.28,1,1 GT:PL:GQ 0/1:218,0,193:99 chr2 11905636 . GTTTTTTTTT GTTTTTTTT 15.6 . INDEL;DP=40;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,33,4;MQ=59;FQ=-146 GT:PL:GQ 1/1:56,111,0:87 chr2 11905876 . C T 98 . DP=12;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,5,1,5;MQ=60;FQ=101;PV4=1,0.38,1,1 GT:PL:GQ 0/1:128,0,138:99 chr2 11907842 . C T 83 . DP=57;VDB=0.0398;AF1=0.5;AC1=1;DP4=18,11,19,5;MQ=60;FQ=86;PV4=0.23,2.2e-21,1,0.22 GT:PL:GQ 0/1:113,0,255:99 chr2 11911761 . C T 98 . DP=26;VDB=0.0359;AF1=0.5;AC1=1;DP4=4,9,3,10;MQ=60;FQ=101;PV4=1,3e-10,1,0.13 GT:PL:GQ 0/1:128,0,244:99 chr2 11924950 . T C 177 . DP=33;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,5,9,4;MQ=59;FQ=180;PV4=1,1,1,1 GT:PL:GQ 0/1:207,0,246:99 chr2 11928423 . C T 101 . DP=29;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,0,12,3;MQ=60;FQ=104;PV4=0.23,1.4e-14,1,1 GT:PL:GQ 0/1:131,0,160:99 chr2 11932173 . G T 3.54 . DP=25;VDB=0.0392;AF1=0.4998;AC1=1;DP4=1,15,0,8;MQ=60;FQ=5.47;PV4=1,4.1e-18,1,1 GT:PL:GQ 0/1:31,0,216:30 chr2 11936798 . A G 37 . DP=9;VDB=0.0014;AF1=0.5;AC1=1;DP4=3,0,5,1;MQ=60;FQ=33.8;PV4=1,0.00021,1,0.088 GT:PL:GQ 0/1:67,0,62:64 chr2 11959905 . T C 6.79 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:37,6,0:7 chr2 12877501 . G GA 217 . INDEL;DP=70;VDB=0.0322;AF1=0.5;AC1=1;DP4=30,7,23,9;MQ=59;FQ=217;PV4=0.4,1,0.24,1 GT:PL:GQ 0/1:255,0,255:99 chr2 13554931 . A G 225 . DP=30;VDB=0.0081;AF1=0.5;AC1=1;DP4=8,6,9,6;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 15415525 . C T 123 . DP=16;VDB=0.0099;AF1=0.5;AC1=1;DP4=6,0,10,0;MQ=59;FQ=93;PV4=1,0.18,0.23,0.33 GT:PL:GQ 0/1:153,0,120:99 chr2 15427173 . C T 223 . DP=55;VDB=0.0384;AF1=0.5;AC1=1;DP4=24,7,20,3;MQ=60;FQ=224;PV4=0.49,1,1,1 GT:PL:GQ 0/1:253,0,255:99 chr2 15448311 . A T 86 . DP=43;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,5,17,6;MQ=60;FQ=89;PV4=1,8.6e-26,1,1 GT:PL:GQ 0/1:116,0,255:99 chr2 15468025 . T C 225 . DP=71;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,23,5,34;MQ=60;FQ=225;PV4=0.22,0.13,0.19,1 GT:PL:GQ 0/1:255,0,255:99 chr2 15470848 . C T 186 . DP=49;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,22,1,23;MQ=60;FQ=189;PV4=0.61,1,1,1 GT:PL:GQ 0/1:216,0,255:99 chr2 15491994 . Gcacacacacacacacacacacacacacacacaca Gcacacacacacacacacacacaca 177 . INDEL;DP=61;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,36,5;MQ=38;FQ=-131 GT:PL:GQ 1/1:255,133,37:99 chr2 15493881 . A G 222 . DP=69;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,14,55;MQ=60;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr2 15519992 . G T 159 . DP=20;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,4,15;MQ=60;FQ=-84 GT:PL:GQ 1/1:192,57,0:99 chr2 15523307 . taaaaaaaaa taaaaaaaa 24.5 . INDEL;DP=8;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,4,4;MQ=60;FQ=-58.5 GT:PL:GQ 1/1:65,24,0:42 chr2 15523549 . T C 91.5 . DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:124,12,0:21 chr2 15533689 . T C 35.3 . DP=5;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,5,0;MQ=44;FQ=-42 GT:PL:GQ 1/1:68,15,0:27 chr2 15533734 . gaaatgaaagcgtatgtctacacaaa gAAATGAAAGCGTATGTCTACACaaatgaaagcgtatgtctacacaaa 162 . INDEL;DP=19;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,5,3;MQ=34;FQ=-58.5 GT:PL:GQ 1/1:203,24,0:45 chr2 15533779 . G A 222 . DP=29;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,14,14;MQ=48;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr2 15533884 . C A 100 . DP=13;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,1,11;MQ=52;FQ=-63 GT:PL:GQ 1/1:133,36,0:69 chr2 15533899 . A G 39 . DP=10;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,9;MQ=52;FQ=-54 GT:PL:GQ 1/1:72,27,0:51 chr2 15601287 . A AT 34.5 . INDEL;DP=15;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,15,0;MQ=60;FQ=-79.5 GT:PL:GQ 1/1:75,45,0:76 chr2 15601441 . C T 222 . DP=99;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,35,61;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 15607842 . T C 82 . DP=39;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,8,6;MQ=60;FQ=-69 GT:PL:GQ 1/1:115,42,0:81 chr2 15614404 . T C 189 . DP=56;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,10,42;MQ=60;FQ=-184 GT:PL:GQ 1/1:222,157,0:99 chr2 15615910 . A G 222 . DP=101;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,53,45;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 15616013 . C G 119 . DP=42;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,3,37;MQ=60;FQ=-147 GT:PL:GQ 1/1:152,120,0:99 chr2 15616030 . C T 176 . DP=25;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,24;MQ=60;FQ=-99 GT:PL:GQ 1/1:209,72,0:99 chr2 15618339 . G A 205 . DP=11;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,9,2;MQ=58;FQ=-60 GT:PL:GQ 1/1:238,33,0:63 chr2 15623282 . C T 3.01 . DP=5;VDB=0.0143;AF1=0.4997;AC1=1;DP4=3,0,1,1;MQ=60;FQ=4.77;PV4=0.4,0.0037,1,0.43 GT:PL:GQ 0/1:30,0,88:28 chr2 15644107 . C A 60 . DP=18;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,18,0;MQ=59;FQ=-81 GT:PL:GQ 1/1:93,54,0:99 chr2 15644111 . C T 92 . DP=18;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,17,0;MQ=60;FQ=-78 GT:PL:GQ 1/1:125,51,0:99 chr2 15644401 . C T 65 . DP=38;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,3,10;MQ=60;FQ=-66 GT:PL:GQ 1/1:98,39,0:75 chr2 15674686 . T C 222 . DP=82;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,45,33;MQ=59;FQ=-262 GT:PL:GQ 1/1:255,235,0:99 chr2 15676686 . G A 94 . DP=34;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,3,21;MQ=60;FQ=-99 GT:PL:GQ 1/1:127,72,0:99 chr2 15678368 . C T 64 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:96,9,0:16 chr2 15678482 . T C 161 . DP=18;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,9;MQ=59;FQ=-81 GT:PL:GQ 1/1:194,54,0:99 chr2 15678501 . GAAAAAAAAA GAAAAAAAA 50.5 . INDEL;DP=19;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,8,8;MQ=60;FQ=-82.5 GT:PL:GQ 1/1:91,48,0:91 chr2 15691886 . G A 4.61 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:34,6,0:5 chr2 15694164 . T TA 214 . INDEL;DP=88;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,57,30;MQ=60;FQ=-290 GT:PL:GQ 1/1:255,255,0:99 chr2 15731998 . A G 118 . DP=17;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,1,7,2;MQ=60;FQ=114;PV4=1,0.14,1,1 GT:PL:GQ 0/1:148,0,142:99 chr2 15735419 . G A 20 . DP=3;VDB=0.0098;AF1=1;AC1=2;DP4=0,0,1,2;MQ=52;FQ=-36 GT:PL:GQ 1/1:52,9,0:15 chr2 15742570 . G A 130 . DP=40;VDB=0.0014;AF1=0.5;AC1=1;DP4=24,0,16,0;MQ=60;FQ=133;PV4=1,0.03,1,0.21 GT:PL:GQ 0/1:160,0,188:99 chr2 15747393 . C T 225 . DP=87;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,39,8,30;MQ=60;FQ=225;PV4=0.78,0.0098,1,0.059 GT:PL:GQ 0/1:255,0,255:99 chr2 15768876 . G A 200 . DP=26;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,6,5,7;MQ=59;FQ=203;PV4=0.7,0.23,1,0.27 GT:PL:GQ 0/1:230,0,255:99 chr2 15768981 . C G 119 . DP=13;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,4,0,8;MQ=60;FQ=86;PV4=0.38,1,1,0.44 GT:PL:GQ 0/1:149,0,113:99 chr2 15770293 . C T 21 . DP=7;VDB=0.0180;AF1=0.5;AC1=1;DP4=0,3,1,3;MQ=57;FQ=24;PV4=1,0.00014,0.22,1 GT:PL:GQ 0/1:51,0,78:54 chr2 15840623 . A G 157 . DP=68;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,24,8,24;MQ=59;FQ=160;PV4=1,4.7e-13,1,1 GT:PL:GQ 0/1:187,0,255:99 chr2 15884555 . G A 77 . DP=8;VDB=0.0003;AF1=0.5;AC1=1;DP4=1,2,1,4;MQ=60;FQ=57;PV4=1,0.18,1,0.029 GT:PL:GQ 0/1:107,0,84:87 chr2 16734284 . T C 225 . DP=84;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,27,19,24;MQ=60;FQ=225;PV4=0.38,0.051,1,0.39 GT:PL:GQ 0/1:255,0,255:99 chr2 16743453 . A C 133 . DP=15;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,2,10;MQ=60;FQ=-63 GT:PL:GQ 1/1:166,36,0:69 chr2 16746897 . C G 54.1 . DP=6;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:87,18,0:33 chr2 17696573 . C T 217 . DP=47;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,26,18;MQ=60;FQ=-159 GT:PL:GQ 1/1:250,132,0:99 chr2 17698678 . A G 222 . DP=47;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,30;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr2 17773524 . G A 222 . DP=21;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,19;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr2 17884495 . C T 103 . DP=11;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,1,5,1;MQ=60;FQ=98.2;PV4=1,0.23,1,0.038 GT:PL:GQ 0/1:133,0,126:99 chr2 17888457 . G A 134 . DP=32;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,1,14,5;MQ=60;FQ=137;PV4=0.36,1.6e-14,1,0.073 GT:PL:GQ 0/1:164,0,185:99 chr2 17890091 . gtatatatatata gTATAtatatatatata 5.08 . INDEL;DP=4;VDB=0.0126;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=47;FQ=7.36;PV4=1,1,0,1 GT:PL:GQ 0/1:41,0,98:41 chr2 17898326 . C T 48 . DP=34;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,11,3,6;MQ=59;FQ=51;PV4=0.44,9.2e-10,1,0.48 GT:PL:GQ 0/1:78,0,255:81 chr2 17913266 . A C 63 . DP=3;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:95,9,0:16 chr2 17927275 . C T 12.3 . DP=7;VDB=0.0040;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=15.1;PV4=1,0.0016,1,0.24 GT:PL:GQ 0/1:42,0,93:44 chr2 17941423 . T G 64 . DP=31;VDB=0.0053;AF1=0.5;AC1=1;DP4=2,11,1,17;MQ=60;FQ=67;PV4=0.56,7.5e-16,1,1 GT:PL:GQ 0/1:94,0,207:97 chr2 17942775 . T A 225 . DP=123;VDB=0.0345;AF1=0.5;AC1=1;DP4=47,28,27,19;MQ=59;FQ=225;PV4=0.7,0.32,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 17954027 . G A 197 . DP=45;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,9,35;MQ=59;FQ=-159 GT:PL:GQ 1/1:230,132,0:99 chr2 17959420 . tacacacacaca tacacacaca 51.5 . INDEL;DP=4;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,1,0,2;MQ=60;FQ=14.6;PV4=1,0.43,1,0.2 GT:PL:GQ 0/1:89,0,49:52 chr2 17962450 . A G 89 . DP=79;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,25,11,23;MQ=59;FQ=92;PV4=0.36,1.6e-32,0.43,1 GT:PL:GQ 0/1:119,0,255:99 chr2 17962518 . C T 225 . DP=69;VDB=0.0393;AF1=0.5;AC1=1;DP4=21,25,9,10;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 18112473 . G A 222 . DP=97;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,44,49;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 18113508 . G A 94 . DP=136;VDB=0.0322;AF1=0.5;AC1=1;DP4=39,40,24,31;MQ=60;FQ=97;PV4=0.6,2.7e-54,0.12,1 GT:PL:GQ 0/1:124,0,255:99 chr2 18113623 . A G 225 . DP=81;VDB=0.0373;AF1=0.5;AC1=1;DP4=19,33,10,14;MQ=59;FQ=225;PV4=0.8,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 18757662 . C G 135 . DP=20;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,10,1,7;MQ=60;FQ=130;PV4=0.44,1,1,0.14 GT:PL:GQ 0/1:165,0,158:99 chr2 20113221 . A G 15.1 . DP=5;VDB=0.0188;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=18.1;PV4=1,0.14,1,0.2 GT:PL:GQ 0/1:45,0,82:48 chr2 20131079 . T C 116 . DP=94;VDB=0.0393;AF1=0.5;AC1=1;DP4=29,18,26,19;MQ=60;FQ=119;PV4=0.83,1e-39,0.15,0.38 GT:PL:GQ 0/1:146,0,255:99 chr2 20131184 . C A 123 . DP=37;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,26;MQ=59;FQ=-123 GT:PL:GQ 1/1:156,96,0:99 chr2 20133221 . C T 225 . DP=118;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,47,11,44;MQ=60;FQ=225;PV4=0.82,0.094,1,0.12 GT:PL:GQ 0/1:255,0,255:99 chr2 20173255 . A C 62 . DP=22;VDB=0.0025;AF1=0.5;AC1=1;DP4=14,2,5,0;MQ=60;FQ=65;PV4=1,1,1,1 GT:PL:GQ 0/1:92,0,223:95 chr2 20189089 . C T 107 . DP=79;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,29,3,34;MQ=59;FQ=110;PV4=0.066,3.1e-34,1,0.29 GT:PL:GQ 0/1:137,0,255:99 chr2 20233135 . T C 60 . DP=8;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,8;MQ=57;FQ=-51 GT:PL:GQ 1/1:93,24,0:45 chr2 20302490 . gagaagaagaagaagaagaagaagaagaagaagaaga gAGAagaagaagaagaagaagaagaagaagaagaagaaga 218 . INDEL;DP=32;VDB=0.0271;AF1=0.505;AC1=1;DP4=1,0,9,4;MQ=52;FQ=-17.6;PV4=1,0.31,0.26,0.38 GT:PL:GQ 0/1:255,0,17:20 chr2 20320493 . G A 24 . DP=14;VDB=0.0001;AF1=0.5;AC1=1;DP4=5,0,8,0;MQ=60;FQ=27;PV4=1,3.9e-09,1,0.02 GT:PL:GQ 0/1:54,0,99:57 chr2 20403794 . A T 222 . DP=45;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,29,16;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr2 20403949 . C T 142 . DP=47;VDB=0.0384;AF1=0.5;AC1=1;DP4=8,10,17,10;MQ=60;FQ=145;PV4=0.24,5.2e-08,1,0.22 GT:PL:GQ 0/1:172,0,251:99 chr2 20405050 . A C 27.1 . DP=6;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:60,18,0:33 chr2 20423154 . A G 173 . DP=27;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,6,19;MQ=60;FQ=-102 GT:PL:GQ 1/1:206,75,0:99 chr2 20700900 . A G 197 . DP=19;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,9,10;MQ=59;FQ=-84 GT:PL:GQ 1/1:230,57,0:99 chr2 20798023 . C T 33 . DP=18;VDB=0.0190;AF1=0.5;AC1=1;DP4=10,1,3,2;MQ=57;FQ=36;PV4=0.21,0.077,1,0.2 GT:PL:GQ 0/1:63,0,159:66 chr2 20818454 . T A 199 . DP=34;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,25,8;MQ=60;FQ=-126 GT:PL:GQ 1/1:232,99,0:99 chr2 20818517 . T C 139 . DP=58;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,12,11,10;MQ=60;FQ=142;PV4=0.4,1.4e-07,0.1,1 GT:PL:GQ 0/1:169,0,255:99 chr2 20822218 . T C 161 . DP=10;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,5;MQ=60;FQ=-48 GT:PL:GQ 1/1:194,21,0:39 chr2 20823612 . A G 92 . DP=8;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,6,2;MQ=60;FQ=-51 GT:PL:GQ 1/1:125,24,0:45 chr2 20823724 . T C 138 . DP=10;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,5;MQ=60;FQ=-54 GT:PL:GQ 1/1:171,27,0:51 chr2 20823850 . T C 23.8 . DP=3;VDB=0.0219;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:55,6,0:10 chr2 20823858 . C T 15.9 . DP=2;VDB=0.0145;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:47,6,0:10 chr2 20824498 . C T 120 . DP=8;VDB=0.0325;AF1=0.5;AC1=1;DP4=2,0,4,2;MQ=57;FQ=10.4;PV4=1,1,1,0.12 GT:PL:GQ 0/1:150,0,37:40 chr2 20824691 . C T 12.3 . DP=19;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,6,0,6;MQ=60;FQ=15.1;PV4=0.044,2.1e-08,1,1 GT:PL:GQ 0/1:42,0,252:44 chr2 20841059 . C T 60.1 . DP=6;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:93,18,0:33 chr2 20845273 . G A 139 . DP=22;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,5,16;MQ=60;FQ=-90 GT:PL:GQ 1/1:172,63,0:99 chr2 20870579 . G A 79.1 . DP=8;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,0,7;MQ=57;FQ=-48 GT:PL:GQ 1/1:112,21,0:39 chr2 20871190 . A C 192 . DP=15;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,3,8;MQ=58;FQ=-60 GT:PL:GQ 1/1:225,33,0:63 chr2 20884546 . A C 93 . DP=37;VDB=0.0244;AF1=0.5;AC1=1;DP4=16,4,9,7;MQ=58;FQ=96;PV4=0.16,1e-10,1,1 GT:PL:GQ 0/1:123,0,255:99 chr2 20884586 . G C 153 . DP=58;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,13,13,13;MQ=58;FQ=156;PV4=0.6,6.5e-19,1,0.49 GT:PL:GQ 0/1:183,0,255:99 chr2 21225281 . C T 141 . DP=62;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,16,9,21;MQ=60;FQ=144;PV4=0.19,3.1e-29,0.16,0.002 GT:PL:GQ 0/1:171,0,255:99 chr2 21231524 . G A 175 . DP=168;VDB=0.0380;AF1=0.5;AC1=1;DP4=36,39,45,43;MQ=59;FQ=178;PV4=0.75,2.8e-63,0.18,1 GT:PL:GQ 0/1:205,0,255:99 chr2 21232195 . G A 139 . DP=97;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,29,22,22;MQ=60;FQ=142;PV4=0.54,1.6e-29,1,1 GT:PL:GQ 0/1:169,0,255:99 chr2 21232803 . T C 222 . DP=77;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,13,25;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr2 21235475 . T C 222 . DP=27;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,4,21;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr2 21237544 . G A 12.3 . DP=12;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,7,0,4;MQ=60;FQ=15.1;PV4=1,1.3e-08,1,1 GT:PL:GQ 0/1:42,0,146:44 chr2 21250914 . G A 208 . DP=43;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,7,33;MQ=59;FQ=-147 GT:PL:GQ 1/1:241,120,0:99 chr2 21252365 . gaggaaggaaggaaggaaggaaggaaggaa gaggaaggaaggaaggaaggaaggaa 111 . INDEL;DP=5;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:151,9,0:16 chr2 21255573 . C CCATCT 71.4 . INDEL;DP=7;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,3;MQ=52;FQ=-43.5 GT:PL:GQ 1/1:111,9,0:16 chr2 21360583 . A G 222 . DP=61;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,38,21;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr2 21364968 . T C 64 . DP=14;VDB=0.0219;AF1=0.5;AC1=1;DP4=1,8,1,4;MQ=58;FQ=67;PV4=1,0.03,1,0.16 GT:PL:GQ 0/1:94,0,179:97 chr2 23862187 . C G 99 . DP=20;VDB=0.0298;AF1=1;AC1=2;DP4=0,1,2,15;MQ=59;FQ=-52;PV4=1,0.0025,1,0.31 GT:PL:GQ 1/1:132,25,0:47 chr2 23865260 . T C 222 . DP=45;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,18,22;MQ=59;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr2 23865908 . G C 222 . DP=34;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,18,14;MQ=58;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr2 23919375 . C T 63 . DP=4;VDB=0.0218;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:95,9,0:16 chr2 23925980 . T C 76 . DP=12;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,11,0;MQ=58;FQ=-60 GT:PL:GQ 1/1:109,33,0:63 chr2 23926659 . T C 222 . DP=61;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,33,26;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr2 24009163 . A G 45 . DP=31;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,15,3,9;MQ=60;FQ=48;PV4=0.66,2.2e-15,1,1 GT:PL:GQ 0/1:75,0,255:78 chr2 24042550 . C T 65.1 . DP=8;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:98,18,0:33 chr2 24055058 . G C 222 . DP=151;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,57,87;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 24108652 . T C 222 . DP=89;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,58,26;MQ=59;FQ=-280 GT:PL:GQ 1/1:255,253,0:99 chr2 24194314 . C T 29.3 . DP=9;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,4;MQ=55;FQ=-42 GT:PL:GQ 1/1:62,15,0:27 chr2 24246175 . C T 155 . DP=36;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,2,34;MQ=60;FQ=-135 GT:PL:GQ 1/1:188,108,0:99 chr2 24246679 . A G 99 . DP=28;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,2,25;MQ=60;FQ=-108 GT:PL:GQ 1/1:132,81,0:99 chr2 24255862 . C G 119 . DP=19;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,18;MQ=60;FQ=-84 GT:PL:GQ 1/1:152,57,0:99 chr2 24369674 . C T 222 . DP=114;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,55,54;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 24384424 . T C 121 . DP=41;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,21,9;MQ=60;FQ=-117 GT:PL:GQ 1/1:154,90,0:99 chr2 24387178 . GC GCC 214 . INDEL;DP=20;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,3,17;MQ=59;FQ=-94.5 GT:PL:GQ 1/1:255,60,0:99 chr2 24388096 . G A 53.1 . DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:86,18,0:33 chr2 24390517 . G A 159 . DP=39;VDB=0.0384;AF1=1;AC1=2;DP4=0,1,15,20;MQ=59;FQ=-106;PV4=1,0.0012,1,0.18 GT:PL:GQ 1/1:192,79,0:99 chr2 24395269 . T C 3.98 . DP=2;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr2 24395294 . T C 23.3 . DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:56,15,0:26 chr2 24395506 . T C 222 . DP=15;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,12;MQ=60;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr2 24398281 . T G 135 . DP=25;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,22,3;MQ=58;FQ=-102 GT:PL:GQ 1/1:168,75,0:99 chr2 24398446 . A T 222 . DP=28;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,8,20;MQ=60;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr2 24402127 . C CAA 214 . INDEL;DP=21;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,9,12;MQ=59;FQ=-97.5 GT:PL:GQ 1/1:255,63,0:99 chr2 24432211 . C T 222 . DP=37;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,4,32;MQ=60;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr2 24432620 . A G 51 . DP=10;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:84,30,0:57 chr2 24432667 . C G 134 . DP=43;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,33,5;MQ=59;FQ=-141 GT:PL:GQ 1/1:167,114,0:99 chr2 24440997 . A T 93 . DP=23;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,23;MQ=60;FQ=-96 GT:PL:GQ 1/1:126,69,0:99 chr2 24475205 . T C 161 . DP=62;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,56,4;MQ=60;FQ=-208 GT:PL:GQ 1/1:194,181,0:99 chr2 24484150 . T C 116 . DP=33;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,28;MQ=60;FQ=-117 GT:PL:GQ 1/1:149,90,0:99 chr2 24521493 . C T 164 . DP=28;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,23,3;MQ=60;FQ=-105 GT:PL:GQ 1/1:197,78,0:99 chr2 24521766 . C T 12 . DP=2;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr2 24905927 . G C 222 . DP=83;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,37,45;MQ=60;FQ=-274 GT:PL:GQ 1/1:255,247,0:99 chr2 24933689 . A C 124 . DP=7;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:157,21,0:39 chr2 24952740 . c cT 44.4 . INDEL;DP=3;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,0,3;MQ=52;FQ=-43.5 GT:PL:GQ 1/1:84,9,0:16 chr2 24962252 . G A 207 . DP=60;VDB=0.0140;AF1=0.5;AC1=1;DP4=29,1,26,2;MQ=60;FQ=183;PV4=0.61,1,1,1 GT:PL:GQ 0/1:237,0,210:99 chr2 24974945 . T G 205 . DP=22;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,10;MQ=60;FQ=-90 GT:PL:GQ 1/1:238,63,0:99 chr2 25039804 . G A 67 . DP=3;VDB=0.0141;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:99,9,0:16 chr2 25046090 . T C 87 . DP=15;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,0,7,3;MQ=57;FQ=52;PV4=0.51,1.4e-06,0.19,0.16 GT:PL:GQ 0/1:117,0,79:82 chr2 25046355 . T C 4.77 . DP=4;VDB=0.0163;AF1=0.4999;AC1=1;DP4=0,2,0,2;MQ=60;FQ=6.95;PV4=1,0.079,1,1 GT:PL:GQ 0/1:33,0,53:33 chr2 25047408 . A G 225 . DP=50;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,23,7,11;MQ=60;FQ=225;PV4=0.36,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 25048847 . A G 50 . DP=41;VDB=0.0298;AF1=0.5;AC1=1;DP4=19,0,21,0;MQ=59;FQ=53;PV4=1,1.2e-16,0.17,1 GT:PL:GQ 0/1:80,0,175:83 chr2 25050977 . T C 73 . DP=18;VDB=0.0399;AF1=0.5;AC1=1;DP4=0,9,1,8;MQ=59;FQ=76;PV4=1,4.9e-05,0.17,1 GT:PL:GQ 0/1:103,0,136:99 chr2 25064193 . G A 18.1 . DP=12;VDB=0.0301;AF1=0.5;AC1=1;DP4=6,2,2,2;MQ=60;FQ=21;PV4=0.55,0.0023,1,1 GT:PL:GQ 0/1:48,0,177:51 chr2 25100738 . C A 216 . DP=34;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,4,14,3;MQ=60;FQ=219;PV4=1,1,1,0.44 GT:PL:GQ 0/1:246,0,255:99 chr2 25100902 . C G 74 . DP=22;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,9,1,10;MQ=60;FQ=77;PV4=1,0.00019,1,1 GT:PL:GQ 0/1:104,0,167:99 chr2 25141538 . A G 100 . DP=164;VDB=0.0399;AF1=0.5;AC1=1;DP4=42,32,37,46;MQ=60;FQ=103;PV4=0.15,1.9e-56,0.091,1 GT:PL:GQ 0/1:130,0,255:99 chr2 25181488 . T C 225 . DP=101;VDB=0.0322;AF1=0.5;AC1=1;DP4=43,7,42,7;MQ=60;FQ=225;PV4=1,0.19,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 25194741 . G A 143 . DP=33;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,6,8,15;MQ=60;FQ=110;PV4=1,3.2e-09,1,1 GT:PL:GQ 0/1:173,0,137:99 chr2 25314186 . T C 111 . DP=49;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,21,3,16;MQ=60;FQ=114;PV4=0.49,4.9e-11,1,1 GT:PL:GQ 0/1:141,0,255:99 chr2 25362194 . G A 41 . DP=17;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,10,1,5;MQ=60;FQ=44;PV4=0.37,1.3e-06,1,0.43 GT:PL:GQ 0/1:71,0,161:74 chr2 25368005 . G A 18.1 . DP=11;VDB=0.0002;AF1=0.5;AC1=1;DP4=1,4,0,5;MQ=60;FQ=21;PV4=1,0.0034,1,0.2 GT:PL:GQ 0/1:48,0,113:51 chr2 25377176 . T C 225 . DP=45;VDB=0.0244;AF1=0.5;AC1=1;DP4=9,15,9,12;MQ=59;FQ=225;PV4=0.77,0.3,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 25458546 . C T 222 . DP=48;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,31,16;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr2 25466888 . G T 152 . DP=7;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,3;MQ=60;FQ=-45 GT:PL:GQ 1/1:185,18,0:33 chr2 25469913 . C T 222 . DP=46;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,35,7;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr2 25472784 . C T 66.5 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:99,12,0:21 chr2 25523196 . T C 22 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:54,9,0:15 chr2 25602142 . G A 138 . DP=69;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,61,5;MQ=59;FQ=-226 GT:PL:GQ 1/1:171,199,0:99 chr2 25656880 . C G 93 . DP=48;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,38;MQ=59;FQ=-147 GT:PL:GQ 1/1:126,120,0:99 chr2 26203678 . T C 205 . DP=57;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,34,21;MQ=60;FQ=-193 GT:PL:GQ 1/1:238,166,0:99 chr2 26204640 . G A 222 . DP=67;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,29,33;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr2 26321526 . T C 148 . DP=13;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,10,3;MQ=60;FQ=-66 GT:PL:GQ 1/1:181,39,0:75 chr2 26350136 . G T 121 . DP=18;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,15;MQ=60;FQ=-81 GT:PL:GQ 1/1:154,54,0:99 chr2 26357748 . G T 93 . DP=56;VDB=0.0322;AF1=0.5;AC1=1;DP4=29,4,20,3;MQ=60;FQ=96;PV4=1,1.2e-20,1,1 GT:PL:GQ 0/1:123,0,255:99 chr2 26407120 . A T 222 . DP=42;VDB=0.0190;AF1=0.5;AC1=1;DP4=11,13,13,5;MQ=60;FQ=223;PV4=0.12,1,1,1 GT:PL:GQ 0/1:252,0,255:99 chr2 26408064 . T C 12.3 . DP=4;VDB=0.0047;AF1=0.5;AC1=1;DP4=1,1,1,1;MQ=60;FQ=15;PV4=1,0.11,1,0.24 GT:PL:GQ 0/1:42,0,56:44 chr2 26455002 . C G 98.1 . DP=6;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-45 GT:PL:GQ 1/1:131,18,0:33 chr2 26455127 . G A 222 . DP=26;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,13,13;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr2 26457267 . T G 222 . DP=20;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,3,15;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr2 26467347 . C A 80 . DP=13;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:113,30,0:57 chr2 26477125 . GACTA GACTACTA 206 . INDEL;DP=7;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:246,15,0:27 chr2 26501953 . C A 85 . DP=17;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,15,0;MQ=58;FQ=-72 GT:PL:GQ 1/1:118,45,0:87 chr2 26502875 . T C 65.1 . DP=7;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:98,18,0:33 chr2 26505858 . A G 222 . DP=34;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,14,17;MQ=59;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr2 26507724 . T C 199 . DP=25;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,19,6;MQ=60;FQ=-102 GT:PL:GQ 1/1:232,75,0:99 chr2 26512733 . T G 222 . DP=60;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,27,32;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr2 26512957 . G C 159 . DP=11;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:192,33,0:63 chr2 26532034 . T G 225 . DP=33;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,5,10,8;MQ=59;FQ=184;PV4=1,0.43,0.21,0.3 GT:PL:GQ 0/1:255,0,211:99 chr2 26532443 . T C 105 . DP=32;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,7,9,7;MQ=60;FQ=108;PV4=1,2.8e-12,1,1 GT:PL:GQ 0/1:135,0,254:99 chr2 26532491 . G T 86 . DP=21;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,7,2,9;MQ=60;FQ=89;PV4=0.64,9.9e-07,1,0.41 GT:PL:GQ 0/1:116,0,200:99 chr2 26534872 . C T 53 . DP=17;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,8,2,6;MQ=60;FQ=56;PV4=0.58,1.6e-07,1,1 GT:PL:GQ 0/1:83,0,165:86 chr2 26536299 . C G 151 . DP=80;VDB=0.0345;AF1=1;AC1=2;DP4=0,1,47,27;MQ=60;FQ=-213;PV4=0.37,3.5e-06,1,0.27 GT:PL:GQ 1/1:184,186,0:99 chr2 26536694 . C T 225 . DP=37;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,5,11,6;MQ=59;FQ=225;PV4=0.72,0.25,0.16,0.051 GT:PL:GQ 0/1:255,0,255:99 chr2 26536727 . C T 225 . DP=47;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,9,17,7;MQ=60;FQ=225;PV4=0.55,0.44,0.17,0.36 GT:PL:GQ 0/1:255,0,255:99 chr2 26537499 . A C 213 . DP=61;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,12,46;MQ=60;FQ=-202 GT:PL:GQ 1/1:246,175,0:99 chr2 26537516 . A T 88 . DP=49;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,19,2,20;MQ=60;FQ=91;PV4=0.25,5.4e-15,1,1 GT:PL:GQ 0/1:118,0,255:99 chr2 26541813 . T A 225 . DP=43;VDB=0.0392;AF1=0.5;AC1=1;DP4=0,21,6,16;MQ=60;FQ=147;PV4=0.021,0.035,1,1 GT:PL:GQ 0/1:255,0,174:99 chr2 26587076 . G A 178 . DP=15;VDB=0.0305;AF1=0.5;AC1=1;DP4=3,2,6,3;MQ=60;FQ=97;PV4=1,0.43,1,0.026 GT:PL:GQ 0/1:208,0,124:99 chr2 26590084 . T G 225 . DP=50;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,11,10,22;MQ=59;FQ=220;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,248:99 chr2 26590118 . C T 108 . DP=40;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,11,3,22;MQ=59;FQ=111;PV4=0.65,1.7e-10,1,1 GT:PL:GQ 0/1:138,0,209:99 chr2 26606347 . T A 13.2 . DP=6;VDB=0.0040;AF1=0.5;AC1=1;DP4=1,2,0,3;MQ=60;FQ=16.1;PV4=1,0.0018,1,1 GT:PL:GQ 0/1:43,0,94:46 chr2 26607992 . T C 46 . DP=26;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,24;MQ=60;FQ=-99 GT:PL:GQ 1/1:79,72,0:99 chr2 26609469 . G A 66 . DP=24;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,15,2,7;MQ=60;FQ=69;PV4=0.13,2.1e-07,1,0.093 GT:PL:GQ 0/1:96,0,177:99 chr2 26647277 . T G 103 . DP=18;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,1,15;MQ=60;FQ=-75 GT:PL:GQ 1/1:136,48,0:93 chr2 26652671 . A G 37.1 . DP=7;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,6;MQ=56;FQ=-45 GT:PL:GQ 1/1:70,18,0:33 chr2 26653457 . G A 225 . DP=157;VDB=0.0345;AF1=0.5;AC1=1;DP4=52,33,47,20;MQ=60;FQ=225;PV4=0.3,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 26663187 . ttgtgtgtgtgtgtgtgtgtgtgtgtgt tTGTGtgtgtgtgtgtgtgtgtgtgtgtgtgt,tTGtgtgtgtgtgtgtgtgtgtgtgtgtgt 12.5 . INDEL;DP=3;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,3,0;MQ=52;FQ=-40.5 GT:PL:GQ 1/1:94,49,43,50,0,47:9 chr2 26667130 . A G 148 . DP=120;VDB=0.0380;AF1=0.5;AC1=1;DP4=50,16,37,14;MQ=60;FQ=151;PV4=0.83,4.7e-39,1,1 GT:PL:GQ 0/1:178,0,255:99 chr2 26667615 . T C 146 . DP=31;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,19,10;MQ=60;FQ=-114 GT:PL:GQ 1/1:179,87,0:99 chr2 26671544 . A G 222 . DP=20;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,15,4;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr2 26676322 . A G 196 . DP=70;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,33,37;MQ=60;FQ=-238 GT:PL:GQ 1/1:229,211,0:99 chr2 26677810 . A G 8.44 . DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr2 26698682 . G T 4.77 . DP=5;VDB=0.0145;AF1=0.4999;AC1=1;DP4=3,0,2,0;MQ=60;FQ=6.98;PV4=1,0.01,1,1 GT:PL:GQ 0/1:33,0,76:33 chr2 26699126 . C G 171 . DP=18;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,5,4,6;MQ=60;FQ=139;PV4=1,1,1,1 GT:PL:GQ 0/1:201,0,166:99 chr2 26699855 . G C 157 . DP=36;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,7,6,14;MQ=59;FQ=160;PV4=0.7,3.2e-11,0.22,1 GT:PL:GQ 0/1:187,0,224:99 chr2 26700700 . G A 81 . DP=69;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,36,4,24;MQ=60;FQ=84;PV4=0.71,3.4e-24,0.12,0.21 GT:PL:GQ 0/1:111,0,255:99 chr2 26700819 . TGGGGG TGGG 15.6 . INDEL;DP=9;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,5,0,2;MQ=60;FQ=18.5;PV4=1,5.4e-05,1,1 GT:PL:GQ 0/1:53,0,124:56 chr2 26726752 . G A 120 . DP=55;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,14,13,16;MQ=60;FQ=123;PV4=1,1.1e-14,1,1 GT:PL:GQ 0/1:150,0,255:99 chr2 26733500 . C T 23 . DP=13;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,0,7,0;MQ=60;FQ=26;PV4=1,3e-08,1,0.38 GT:PL:GQ 0/1:53,0,124:56 chr2 26739247 . T A 27 . DP=19;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,3,3,2;MQ=60;FQ=30;PV4=0.58,4e-06,1,1 GT:PL:GQ 0/1:57,0,236:60 chr2 26739423 . T C 152 . DP=56;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,17,7,17;MQ=59;FQ=155;PV4=0.27,4.5e-18,1,1 GT:PL:GQ 0/1:182,0,255:99 chr2 26741961 . G A 111 . DP=82;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,35,8,20;MQ=60;FQ=114;PV4=0.8,2.6e-21,1,1 GT:PL:GQ 0/1:141,0,255:99 chr2 26750557 . T C 65 . DP=11;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:98,33,0:63 chr2 26750645 . G A 90 . DP=86;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,19,30,7;MQ=60;FQ=93;PV4=0.056,6.3e-33,1,0.12 GT:PL:GQ 0/1:120,0,255:99 chr2 26750658 . G A 150 . DP=92;VDB=0.0322;AF1=0.5;AC1=1;DP4=28,25,27,10;MQ=60;FQ=153;PV4=0.078,1.1e-24,1,1 GT:PL:GQ 0/1:180,0,255:99 chr2 26781247 . G C 156 . DP=41;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,6,15,7;MQ=60;FQ=159;PV4=1,3e-08,1,0.34 GT:PL:GQ 0/1:186,0,255:99 chr2 26798893 . A T 199 . DP=178;VDB=0.0380;AF1=0.5;AC1=1;DP4=34,38,49,54;MQ=60;FQ=202;PV4=1,1.7e-23,0.39,0.2 GT:PL:GQ 0/1:229,0,255:99 chr2 26799031 . G A 65 . DP=36;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,16,1,17;MQ=59;FQ=68;PV4=1,6.9e-17,0.17,0.3 GT:PL:GQ 0/1:95,0,205:98 chr2 26800422 . G A 204 . DP=52;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,21,30;MQ=60;FQ=-181 GT:PL:GQ 1/1:237,154,0:99 chr2 26801586 . G A 222 . DP=24;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,19,4;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr2 26804218 . G A 222 . DP=62;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,38,19;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr2 26818006 . T C 162 . DP=44;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,22,15;MQ=60;FQ=-138 GT:PL:GQ 1/1:195,111,0:99 chr2 26818021 . C T 197 . DP=47;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,28,17;MQ=60;FQ=-162 GT:PL:GQ 1/1:230,135,0:99 chr2 26951449 . G A 9.31 . DP=2;VDB=0.0159;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr2 26997031 . G A 120 . DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,4,17,4;MQ=60;FQ=123;PV4=1,5e-13,1,1 GT:PL:GQ 0/1:150,0,255:99 chr2 27014980 . T C 120 . DP=75;VDB=0.0400;AF1=0.5;AC1=1;DP4=20,20,15,17;MQ=60;FQ=123;PV4=0.82,3.4e-20,1,1 GT:PL:GQ 0/1:150,0,255:99 chr2 27015118 . G A 57 . DP=21;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,8,1,11;MQ=60;FQ=60;PV4=1,6.2e-11,1,1 GT:PL:GQ 0/1:87,0,170:90 chr2 27015141 . GCC GCCC 128 . INDEL;DP=12;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,3,1,6;MQ=60;FQ=19.5;PV4=1,1,1,0.43 GT:PL:GQ 0/1:166,0,54:57 chr2 27015903 . T C 107 . DP=16;VDB=0.0011;AF1=0.5;AC1=1;DP4=7,1,8,0;MQ=58;FQ=110;PV4=1,0.33,0.17,1 GT:PL:GQ 0/1:137,0,166:99 chr2 27015969 . G A 225 . DP=36;VDB=0.0140;AF1=0.5;AC1=1;DP4=13,8,8,7;MQ=60;FQ=225;PV4=0.74,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 27163044 . T C 148 . DP=36;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,18,2,11;MQ=60;FQ=151;PV4=1,0.37,1,0.33 GT:PL:GQ 0/1:178,0,241:99 chr2 27164806 . G A 178 . DP=22;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,4,5,7;MQ=59;FQ=180;PV4=0.67,0.018,0.19,1 GT:PL:GQ 0/1:208,0,216:99 chr2 27169637 . tc t 36.5 . INDEL;DP=5;VDB=0.0014;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=24.4;PV4=1,0.039,1,0.25 GT:PL:GQ 0/1:74,0,59:62 chr2 27169842 . C A 160 . DP=58;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,18,6,23;MQ=60;FQ=163;PV4=0.37,1.5e-09,0.17,1 GT:PL:GQ 0/1:190,0,255:99 chr2 27246285 . C T 222 . DP=69;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,34,32;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr2 27249245 . A G 177 . DP=90;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,32,13,32;MQ=60;FQ=180;PV4=0.63,4.2e-21,1,0.49 GT:PL:GQ 0/1:207,0,255:99 chr2 27259794 . G A 51 . DP=14;VDB=0.0008;AF1=0.5;AC1=1;DP4=3,2,9,0;MQ=60;FQ=54;PV4=0.11,2.6e-07,1,0.29 GT:PL:GQ 0/1:81,0,123:84 chr2 27260469 . G A 117 . DP=55;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,10,8,17;MQ=59;FQ=120;PV4=0.14,4.9e-14,1,1 GT:PL:GQ 0/1:147,0,255:99 chr2 27261329 . A G 80 . DP=10;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,8,2;MQ=55;FQ=-57 GT:PL:GQ 1/1:113,30,0:57 chr2 27262763 . GGGAGGAGG GGGAGG 214 . INDEL;DP=52;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,5,45;MQ=53;FQ=-186 GT:PL:GQ 1/1:255,151,0:99 chr2 27263122 . T C 138 . DP=84;VDB=0.0398;AF1=0.5;AC1=1;DP4=33,16,18,15;MQ=59;FQ=141;PV4=0.26,5.4e-28,0.39,0.17 GT:PL:GQ 0/1:168,0,255:99 chr2 27276166 . C G 87 . DP=27;VDB=0.0373;AF1=0.5;AC1=1;DP4=12,4,5,6;MQ=60;FQ=90;PV4=0.22,7.4e-16,1,0.23 GT:PL:GQ 0/1:117,0,255:99 chr2 27276202 . G A 112 . DP=34;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,4,18,3;MQ=60;FQ=115;PV4=0.38,6.8e-11,1,1 GT:PL:GQ 0/1:142,0,211:99 chr2 27279416 . A G 222 . DP=65;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,47,15;MQ=59;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr2 27280092 . T A 60 . DP=25;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,2,12,1;MQ=60;FQ=63;PV4=0.58,4.7e-12,1,0.25 GT:PL:GQ 0/1:90,0,204:93 chr2 27280127 . G A 148 . DP=46;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,6,19,7;MQ=59;FQ=151;PV4=1,2.3e-18,1,1 GT:PL:GQ 0/1:178,0,255:99 chr2 27290525 . A G 225 . DP=83;VDB=0.0398;AF1=0.5;AC1=1;DP4=11,28,16,25;MQ=59;FQ=225;PV4=0.35,1,0.3,1 GT:PL:GQ 0/1:255,0,255:99 chr2 27291661 . G A 5.46 . DP=14;VDB=0.0053;AF1=0.4999;AC1=1;DP4=0,8,0,6;MQ=60;FQ=7.8;PV4=1,4.1e-09,1,0.49 GT:PL:GQ 0/1:34,0,148:34 chr2 27293150 . G T 225 . DP=72;VDB=0.0244;AF1=0.5;AC1=1;DP4=16,21,6,27;MQ=59;FQ=225;PV4=0.038,0.3,0.066,1 GT:PL:GQ 0/1:255,0,255:99 chr2 27302165 . T C 73 . DP=25;VDB=0.0025;AF1=0.5;AC1=1;DP4=3,9,1,11;MQ=60;FQ=76;PV4=0.59,1.4e-05,1,1 GT:PL:GQ 0/1:103,0,198:99 chr2 27303755 . A G 137 . DP=35;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,1,32;MQ=60;FQ=-126 GT:PL:GQ 1/1:170,99,0:99 chr2 27307769 . G C 134 . DP=55;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,15,14,14;MQ=60;FQ=137;PV4=0.79,2.5e-24,0.17,1 GT:PL:GQ 0/1:164,0,255:99 chr2 27315252 . G A 225 . DP=75;VDB=0.0398;AF1=0.5;AC1=1;DP4=24,13,20,18;MQ=59;FQ=225;PV4=0.35,0.46,1,0.2 GT:PL:GQ 0/1:255,0,255:99 chr2 27319826 . A G 37.1 . DP=9;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,7;MQ=57;FQ=-48 GT:PL:GQ 1/1:70,21,0:39 chr2 27323385 . C T 170 . DP=62;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,6,29,12;MQ=60;FQ=173;PV4=1,9.3e-18,0.25,0.45 GT:PL:GQ 0/1:200,0,246:99 chr2 27323468 . A C 154 . DP=46;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,8,35;MQ=59;FQ=-156 GT:PL:GQ 1/1:187,129,0:99 chr2 27324724 . G C 108 . DP=84;VDB=0.0298;AF1=0.5;AC1=1;DP4=25,25,16,17;MQ=60;FQ=111;PV4=1,2.6e-27,1,1 GT:PL:GQ 0/1:138,0,255:99 chr2 27324751 . G T 225 . DP=99;VDB=0.0400;AF1=0.5;AC1=1;DP4=26,26,23,23;MQ=60;FQ=225;PV4=1,0.26,1,0.11 GT:PL:GQ 0/1:255,0,255:99 chr2 27325141 . G A 159 . DP=61;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,9,16,10;MQ=60;FQ=162;PV4=0.4,2.9e-19,1,1 GT:PL:GQ 0/1:189,0,255:99 chr2 27351948 . T G 222 . DP=96;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,42,49;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 27354173 . C A 145 . DP=8;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:178,24,0:45 chr2 27355454 . A C 20.6 . DP=5;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:53,12,0:21 chr2 27423913 . G A 107 . DP=63;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,15,14,16;MQ=60;FQ=110;PV4=0.62,1e-23,0.15,1 GT:PL:GQ 0/1:137,0,255:99 chr2 27424454 . C T 30 . DP=6;VDB=0.0287;AF1=0.5;AC1=1;DP4=1,1,3,1;MQ=60;FQ=15.1;PV4=1,0.0061,1,1 GT:PL:GQ 0/1:60,0,42:45 chr2 27424496 . G A 5.46 . DP=25;VDB=0.0399;AF1=0.4999;AC1=1;DP4=16,2,6,0;MQ=60;FQ=7.8;PV4=1,9.8e-08,1,0.012 GT:PL:GQ 0/1:34,0,241:34 chr2 27424636 . G A 120 . DP=113;VDB=0.0399;AF1=0.5;AC1=1;DP4=33,27,31,18;MQ=60;FQ=123;PV4=0.44,7.4e-34,1,1 GT:PL:GQ 0/1:150,0,255:99 chr2 27426514 . G C 163 . DP=36;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,32,4;MQ=60;FQ=-135 GT:PL:GQ 1/1:196,108,0:99 chr2 27428147 . A G 82 . DP=14;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:115,33,0:63 chr2 27428173 . C T 109 . DP=26;VDB=0.0066;AF1=0.5;AC1=1;DP4=13,2,10,0;MQ=60;FQ=112;PV4=0.5,1,1,1 GT:PL:GQ 0/1:139,0,211:99 chr2 27428295 . A G 222 . DP=71;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,35,31;MQ=59;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr2 27428815 . C G 225 . DP=71;VDB=0.0380;AF1=0.5;AC1=1;DP4=30,10,25,5;MQ=59;FQ=225;PV4=0.56,1,0.05,0.22 GT:PL:GQ 0/1:255,0,255:99 chr2 27428877 . C G 141 . DP=78;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,28,15,22;MQ=59;FQ=144;PV4=0.48,1.6e-27,0.47,1 GT:PL:GQ 0/1:171,0,255:99 chr2 27430237 . T C 165 . DP=116;VDB=0.0380;AF1=0.5;AC1=1;DP4=40,20,35,16;MQ=60;FQ=168;PV4=0.84,7.9e-28,0.14,1 GT:PL:GQ 0/1:195,0,255:99 chr2 27435250 . A G 192 . DP=22;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,7;MQ=60;FQ=-87 GT:PL:GQ 1/1:225,60,0:99 chr2 27435374 . G A 120 . DP=15;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,3,2,6;MQ=60;FQ=99;PV4=0.58,0.31,1,0.15 GT:PL:GQ 0/1:150,0,126:99 chr2 27439518 . A G 225 . DP=78;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,23,12,27;MQ=60;FQ=225;PV4=0.48,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 27439751 . G T 211 . DP=39;VDB=0.0384;AF1=0.5;AC1=1;DP4=7,12,5,13;MQ=60;FQ=214;PV4=0.73,0.43,1,0.37 GT:PL:GQ 0/1:241,0,255:99 chr2 27440722 . C T 101 . DP=30;VDB=0.0066;AF1=0.5;AC1=1;DP4=9,4,13,3;MQ=60;FQ=104;PV4=0.67,1.3e-08,1,1 GT:PL:GQ 0/1:131,0,220:99 chr2 27440785 . C T 222 . DP=99;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,63,26;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 27441018 . C G 12.3 . DP=7;VDB=0.0145;AF1=0.5;AC1=1;DP4=0,5,0,2;MQ=60;FQ=15.1;PV4=1,0.16,1,0.46 GT:PL:GQ 0/1:42,0,119:44 chr2 27444024 . G A 92 . DP=43;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,8,16,4;MQ=60;FQ=95;PV4=0.31,6.7e-13,1,1 GT:PL:GQ 0/1:122,0,255:99 chr2 27445518 . A G 114 . DP=31;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,9,3,13;MQ=60;FQ=117;PV4=0.25,7.4e-11,1,1 GT:PL:GQ 0/1:144,0,250:99 chr2 27449293 . C G 225 . DP=42;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,9,10,14;MQ=60;FQ=225;PV4=0.76,0.32,1,0.48 GT:PL:GQ 0/1:255,0,255:99 chr2 27455281 . C T 46 . DP=18;VDB=0.0066;AF1=0.5;AC1=1;DP4=7,1,8,1;MQ=59;FQ=49;PV4=1,2.8e-09,0.18,0.31 GT:PL:GQ 0/1:76,0,166:79 chr2 27458606 . A G 190 . DP=29;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,15,2,11;MQ=60;FQ=132;PV4=0.21,1,1,0.27 GT:PL:GQ 0/1:220,0,159:99 chr2 27460787 . G C 225 . DP=59;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,21,15,11;MQ=60;FQ=225;PV4=0.11,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 27460968 . A G 179 . DP=143;VDB=0.0380;AF1=0.5;AC1=1;DP4=33,30,35,36;MQ=59;FQ=182;PV4=0.73,3.4e-35,0.19,1 GT:PL:GQ 0/1:209,0,255:99 chr2 27462651 . T C 171 . DP=81;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,20,19,25;MQ=60;FQ=174;PV4=1,2.6e-25,1,1 GT:PL:GQ 0/1:201,0,255:99 chr2 27463351 . C T 187 . DP=141;VDB=0.0399;AF1=0.5;AC1=1;DP4=31,36,31,40;MQ=60;FQ=190;PV4=0.86,1.7e-29,0.17,1 GT:PL:GQ 0/1:217,0,255:99 chr2 27465881 . G T 52 . DP=10;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,2,3,2;MQ=60;FQ=55;PV4=1,0.00014,1,1 GT:PL:GQ 0/1:82,0,111:85 chr2 27505758 . C T 180 . DP=54;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,30,2,17;MQ=60;FQ=183;PV4=1,1,1,1 GT:PL:GQ 0/1:210,0,255:99 chr2 27522543 . cctatctatctatctatctatctatctatctatctatctatc cCTATctatctatctatctatctatctatctatctatctatctatc 149 . INDEL;DP=21;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,5,1,3;MQ=60;FQ=148;PV4=0.44,1,1,0.029 GT:PL:GQ 0/1:187,0,184:99 chr2 27535311 . TGG TGGG 214 . INDEL;DP=88;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,40,44;MQ=60;FQ=-288 GT:PL:GQ 1/1:255,253,0:99 chr2 27556721 . G A 154 . DP=55;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,14,15,10;MQ=60;FQ=157;PV4=0.79,1.5e-18,0.14,1 GT:PL:GQ 0/1:184,0,255:99 chr2 27591708 . G A 11.3 . DP=18;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,10,0,6;MQ=60;FQ=14.2;PV4=0.53,5.4e-09,1,0.4 GT:PL:GQ 0/1:41,0,220:43 chr2 27594397 . C T 128 . DP=22;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,8,0,12;MQ=60;FQ=113;PV4=1,0.074,1,0.086 GT:PL:GQ 0/1:158,0,140:99 chr2 27597338 . C A 135 . DP=15;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,6,2,5;MQ=60;FQ=129;PV4=1,0.28,1,1 GT:PL:GQ 0/1:165,0,157:99 chr2 27598097 . T C 34 . DP=17;VDB=0.0008;AF1=0.5;AC1=1;DP4=1,7,0,9;MQ=59;FQ=37;PV4=0.47,3.4e-07,1,0.43 GT:PL:GQ 0/1:64,0,154:67 chr2 27606098 . A G 63 . DP=9;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:96,27,0:51 chr2 27609212 . T C 70 . DP=23;VDB=0.0140;AF1=0.5;AC1=1;DP4=2,9,2,10;MQ=59;FQ=73;PV4=1,2.7e-12,0.18,1 GT:PL:GQ 0/1:100,0,204:99 chr2 27656822 . GA GAA 217 . INDEL;DP=62;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,11,17,15;MQ=60;FQ=217;PV4=0.45,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 27685388 . G A 13.2 . DP=8;VDB=0.0020;AF1=0.5;AC1=1;DP4=5,0,3,0;MQ=60;FQ=16.1;PV4=1,0.00014,1,0.12 GT:PL:GQ 0/1:43,0,121:46 chr2 27712408 . C T 54 . DP=28;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,8,5,3;MQ=59;FQ=57;PV4=1,1.5e-11,0.058,1 GT:PL:GQ 0/1:84,0,255:87 chr2 27720385 . C T 109 . DP=26;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,3,9,4;MQ=60;FQ=112;PV4=1,6.2e-06,1,1 GT:PL:GQ 0/1:139,0,224:99 chr2 27721469 . G A 29 . DP=23;VDB=0.0099;AF1=0.5;AC1=1;DP4=10,1,10,0;MQ=60;FQ=32;PV4=1,6.7e-12,1,1 GT:PL:GQ 0/1:59,0,196:62 chr2 27730817 . G A 68 . DP=14;VDB=0.0164;AF1=0.5;AC1=1;DP4=7,0,5,2;MQ=60;FQ=71;PV4=0.46,7.2e-08,1,1 GT:PL:GQ 0/1:98,0,138:99 chr2 27730940 . T C 157 . DP=54;VDB=0.0384;AF1=0.5;AC1=1;DP4=15,13,14,10;MQ=60;FQ=160;PV4=0.78,4e-16,1,1 GT:PL:GQ 0/1:187,0,255:99 chr2 27789861 . T A 156 . DP=162;VDB=0.0345;AF1=0.5;AC1=1;DP4=37,59,29,37;MQ=60;FQ=159;PV4=0.52,1.7e-40,0.18,1 GT:PL:GQ 0/1:186,0,255:99 chr2 27801403 . C G 222 . DP=189;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,85,98;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 27801418 . C A 222 . DP=192;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,87,98;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 27801493 . T C 225 . DP=151;VDB=0.0400;AF1=0.5;AC1=1;DP4=39,42,30,36;MQ=59;FQ=225;PV4=0.87,1,0.25,1 GT:PL:GQ 0/1:255,0,255:99 chr2 27801759 . A G 225 . DP=112;VDB=0.0400;AF1=0.5;AC1=1;DP4=31,21,37,19;MQ=60;FQ=225;PV4=0.55,0.43,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 27802805 . A G 225 . DP=68;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,21,12,21;MQ=60;FQ=225;PV4=0.81,1,1,0.029 GT:PL:GQ 0/1:255,0,255:99 chr2 27803089 . T C 117 . DP=62;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,16,10,18;MQ=59;FQ=120;PV4=0.3,1.3e-26,1,1 GT:PL:GQ 0/1:147,0,255:99 chr2 27804432 . T C 171 . DP=59;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,26,33;MQ=60;FQ=-205 GT:PL:GQ 1/1:204,178,0:99 chr2 27824168 . G C 225 . DP=206;VDB=0.0345;AF1=0.5;AC1=1;DP4=78,33,72,19;MQ=60;FQ=225;PV4=0.2,1,0.11,1 GT:PL:GQ 0/1:255,0,255:99 chr2 27830990 . G T 94 . DP=19;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,18;MQ=59;FQ=-81 GT:PL:GQ 1/1:127,54,0:99 chr2 27838058 . C A 218 . DP=96;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,41,49;MQ=60;FQ=-282 GT:PL:GQ 1/1:251,255,0:99 chr2 27839107 . T C 222 . DP=51;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,30,21;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr2 27851918 . G A 46 . DP=40;VDB=0.0216;AF1=0.5;AC1=1;DP4=24,3,9,3;MQ=56;FQ=49;PV4=0.35,1.2e-14,1,0.34 GT:PL:GQ 0/1:76,0,249:79 chr2 27852117 . A AGGTCTT 214 . INDEL;DP=60;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,29;MQ=33;FQ=-164 GT:PL:GQ 1/1:255,129,0:99 chr2 27852637 . A G 21.8 . DP=3;VDB=0.0010;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:53,6,0:10 chr2 27855397 . A T 103 . DP=33;VDB=0.0164;AF1=0.5;AC1=1;DP4=10,5,14,3;MQ=60;FQ=106;PV4=0.42,1.1e-06,1,0.41 GT:PL:GQ 0/1:133,0,245:99 chr2 27857992 . T A 142 . DP=124;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,76,36;MQ=58;FQ=-282 GT:PL:GQ 1/1:175,255,0:99 chr2 27861707 . G A 62 . DP=5;VDB=0.0022;AF1=0.5006;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-3.53;PV4=1,0.25,1,0.36 GT:PL:GQ 0/1:92,0,26:29 chr2 27876666 . T G 26 . DP=15;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,8,2,3;MQ=60;FQ=29;PV4=0.56,1e-07,1,1 GT:PL:GQ 0/1:56,0,210:59 chr2 27884878 . C T 32 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:64,9,0:16 chr2 27887034 . C A 101 . DP=44;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,7,15,10;MQ=59;FQ=104;PV4=1,1.6e-17,0.19,1 GT:PL:GQ 0/1:131,0,255:99 chr2 28065875 . C G 101 . DP=9;VDB=0.0006;AF1=0.5;AC1=1;DP4=3,0,6,0;MQ=60;FQ=43;PV4=1,1,1,1 GT:PL:GQ 0/1:131,0,70:73 chr2 28236120 . C T 136 . DP=113;VDB=0.0298;AF1=0.5;AC1=1;DP4=31,22,44,15;MQ=60;FQ=139;PV4=0.11,1.1e-38,1,1 GT:PL:GQ 0/1:166,0,255:99 chr2 28464435 . T C 18.8 . DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:50,6,0:10 chr2 28467843 . CGT CGTGT 217 . INDEL;DP=33;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,16,3,10;MQ=59;FQ=217;PV4=0.67,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 28634790 . G A 208 . DP=21;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,4,6,5;MQ=60;FQ=182;PV4=1,1,1,1 GT:PL:GQ 0/1:238,0,209:99 chr2 28718897 . A G 198 . DP=27;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,7;MQ=59;FQ=-102 GT:PL:GQ 1/1:231,75,0:99 chr2 28748838 . T C 142 . DP=44;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,15,10,12;MQ=60;FQ=145;PV4=0.21,1.8e-17,1,1 GT:PL:GQ 0/1:172,0,255:99 chr2 28748857 . T C 169 . DP=41;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,13,27;MQ=60;FQ=-147 GT:PL:GQ 1/1:202,120,0:99 chr2 28748916 . A C 37 . DP=24;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,12,0,10;MQ=59;FQ=40;PV4=1,9.8e-07,0.13,1 GT:PL:GQ 0/1:67,0,182:70 chr2 28752498 . T C 222 . DP=54;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,40,14;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr2 28752555 . T C 222 . DP=87;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,54,31;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 28752727 . C G 114 . DP=17;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,13;MQ=60;FQ=-69 GT:PL:GQ 1/1:147,42,0:81 chr2 28752741 . A G 150 . DP=11;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:183,30,0:57 chr2 28761257 . A G 90.3 . DP=6;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:123,15,0:27 chr2 28761282 . A G 55.3 . DP=5;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,5;MQ=55;FQ=-42 GT:PL:GQ 1/1:88,15,0:27 chr2 28763374 . G T 155 . DP=44;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,12,8,16;MQ=59;FQ=158;PV4=1,5.7e-19,0.1,0.4 GT:PL:GQ 0/1:185,0,255:99 chr2 28771452 . CTATATATATATATATA CTATATATATATATA 183 . INDEL;DP=6;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,3,3;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:223,18,0:33 chr2 28771624 . T G 222 . DP=48;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,33,11;MQ=59;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr2 28785754 . G C 62.3 . DP=5;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:95,15,0:27 chr2 28785768 . A G 59 . DP=10;VDB=0.0180;AF1=0.5;AC1=1;DP4=5,1,4,0;MQ=60;FQ=62;PV4=1,0.38,1,0.4 GT:PL:GQ 0/1:89,0,144:92 chr2 28795962 . G A 44.5 . DP=5;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:77,12,0:21 chr2 28816948 . C T 222 . DP=111;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,34,72;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 28821613 . C T 109 . DP=33;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,13,8,8;MQ=60;FQ=112;PV4=0.16,3.2e-15,1,0.21 GT:PL:GQ 0/1:139,0,255:99 chr2 28821662 . C T 155 . DP=11;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:188,27,0:51 chr2 28824303 . C G 14.2 . DP=6;VDB=0.0070;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=17.1;PV4=1,0.00039,1,0.43 GT:PL:GQ 0/1:44,0,82:47 chr2 28824793 . C G 222 . DP=68;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,24,38;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr2 28825607 . G A 32 . DP=27;VDB=0.0384;AF1=0.5;AC1=1;DP4=12,3,10,1;MQ=59;FQ=35;PV4=0.61,4.2e-07,1,1 GT:PL:GQ 0/1:62,0,224:65 chr2 28827026 . T C 225 . DP=44;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,16,7,11;MQ=60;FQ=225;PV4=0.75,0.24,1,0.37 GT:PL:GQ 0/1:255,0,255:99 chr2 28827625 . C T 225 . DP=50;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,19,6,14;MQ=60;FQ=225;PV4=0.76,0.42,0.11,1 GT:PL:GQ 0/1:255,0,255:99 chr2 28827644 . A G 195 . DP=42;VDB=0.0190;AF1=0.5;AC1=1;DP4=8,14,3,14;MQ=59;FQ=198;PV4=0.29,1,0.13,1 GT:PL:GQ 0/1:225,0,255:99 chr2 28840691 . C T 97 . DP=55;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,28,2,21;MQ=60;FQ=100;PV4=1,2.7e-17,0.12,0.047 GT:PL:GQ 0/1:127,0,255:99 chr2 28841021 . G A 13.2 . DP=3;VDB=0.0156;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:45,9,0:14 chr2 28841049 . G A 55.5 . DP=4;VDB=0.0301;AF1=1;AC1=2;DP4=0,0,2,2;MQ=60;FQ=-39 GT:PL:GQ 1/1:88,12,0:21 chr2 28843871 . G C 69 . DP=23;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,11,1,9;MQ=58;FQ=72;PV4=1,7.1e-07,0.05,0.13 GT:PL:GQ 0/1:99,0,210:99 chr2 28843909 . G A 23 . DP=12;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,7,0,5;MQ=58;FQ=26;PV4=1,1.2e-09,0.13,0.45 GT:PL:GQ 0/1:53,0,143:56 chr2 28847806 . C G 159 . DP=105;VDB=0.0398;AF1=0.5;AC1=1;DP4=28,20,39,13;MQ=59;FQ=162;PV4=0.091,1.7e-25,0.18,0.41 GT:PL:GQ 0/1:189,0,255:99 chr2 28853352 . C T 8.64 . DP=8;VDB=0.0059;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=11.3;PV4=1,8.4e-05,1,0.31 GT:PL:GQ 0/1:38,0,104:40 chr2 28853377 . T C 81 . DP=15;VDB=0.0099;AF1=0.5;AC1=1;DP4=8,1,6,0;MQ=60;FQ=84;PV4=1,0.14,1,1 GT:PL:GQ 0/1:111,0,180:99 chr2 28854816 . G A 18.1 . DP=5;VDB=0.0196;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=21;PV4=1,0.28,1,1 GT:PL:GQ 0/1:48,0,75:51 chr2 28854958 . C T 225 . DP=38;VDB=0.0140;AF1=0.5;AC1=1;DP4=13,7,12,5;MQ=57;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 28855088 . CTTTTTTTTTTTTT CTTTTTTTTTTTTTTT 4.92 . INDEL;DP=27;VDB=0.0373;AF1=1;AC1=2;DP4=1,3,3,7;MQ=60;FQ=-34.5;PV4=1,1,1,1 GT:PL:GQ 0/1:39,0,0:5 chr2 28855918 . AGG AGGG 214 . INDEL;DP=45;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,26;MQ=60;FQ=-167 GT:PL:GQ 1/1:255,132,0:99 chr2 28856047 . T C 122 . DP=12;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,4,0,8;MQ=60;FQ=63;PV4=1,0.41,1,0.22 GT:PL:GQ 0/1:152,0,90:93 chr2 28863738 . A G 40 . DP=32;VDB=0.0216;AF1=0.5;AC1=1;DP4=14,3,10,1;MQ=60;FQ=43;PV4=1,2.4e-12,1,1 GT:PL:GQ 0/1:70,0,248:73 chr2 28865760 . T C 222 . DP=53;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,18,34;MQ=59;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr2 29001691 . A G 83 . DP=17;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,0,6,2;MQ=60;FQ=86;PV4=0.21,1.4e-07,1,0.12 GT:PL:GQ 0/1:113,0,156:99 chr2 29001991 . A C 143 . DP=19;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,9,2,6;MQ=59;FQ=146;PV4=1,1,1,0.37 GT:PL:GQ 0/1:173,0,204:99 chr2 29041877 . T C 16.1 . DP=16;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,0,6,1;MQ=60;FQ=19.1;PV4=0.47,1.7e-07,1,0.44 GT:PL:GQ 0/1:46,0,136:49 chr2 29045323 . C T 100 . DP=5;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:133,15,0:27 chr2 29052256 . T C 77.5 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:110,12,0:21 chr2 29087814 . C A 39 . DP=16;VDB=0.0216;AF1=0.5;AC1=1;DP4=7,1,7,0;MQ=60;FQ=42;PV4=1,4.2e-07,1,1 GT:PL:GQ 0/1:69,0,169:72 chr2 29092679 . T C 167 . DP=72;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,16,15,14;MQ=59;FQ=170;PV4=0.47,4.9e-09,1,0.36 GT:PL:GQ 0/1:197,0,255:99 chr2 29092850 . G T 110 . DP=79;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,21,13,14;MQ=60;FQ=113;PV4=0.81,3.6e-14,1,1 GT:PL:GQ 0/1:140,0,255:99 chr2 29129418 . A G 155 . DP=107;VDB=0.0398;AF1=0.5;AC1=1;DP4=27,33,15,30;MQ=59;FQ=158;PV4=0.31,1.6e-26,0.39,1 GT:PL:GQ 0/1:185,0,255:99 chr2 29135468 . C G 177 . DP=68;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,41,25;MQ=59;FQ=-226 GT:PL:GQ 1/1:210,199,0:99 chr2 29136489 . G T 125 . DP=44;VDB=0.0384;AF1=0.5;AC1=1;DP4=17,4,17,4;MQ=59;FQ=128;PV4=1,4.2e-17,0.16,0.018 GT:PL:GQ 0/1:155,0,255:99 chr2 29136623 . T C 193 . DP=36;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,10,2,19;MQ=60;FQ=196;PV4=0.19,0.12,1,1 GT:PL:GQ 0/1:223,0,242:99 chr2 29136653 . T C 75 . DP=17;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,3,1,10;MQ=60;FQ=77.8;PV4=0.21,3.8e-05,1,1 GT:PL:GQ 0/1:105,0,119:99 chr2 29136685 . C T 151 . DP=12;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,3,1,8;MQ=60;FQ=28;PV4=1,1,1,0.075 GT:PL:GQ 0/1:181,0,55:58 chr2 29140711 . G A 64 . DP=88;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,28,21,15;MQ=60;FQ=67;PV4=0.19,2.2e-38,1,1 GT:PL:GQ 0/1:94,0,255:97 chr2 29145725 . G T 154 . DP=24;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,17,6;MQ=59;FQ=-96 GT:PL:GQ 1/1:187,69,0:99 chr2 29152456 . A G 109 . DP=84;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,8,36,11;MQ=60;FQ=112;PV4=1,1.4e-45,1,0.14 GT:PL:GQ 0/1:139,0,255:99 chr2 29169612 . T C 213 . DP=70;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,29,39;MQ=59;FQ=-232 GT:PL:GQ 1/1:246,205,0:99 chr2 29222070 . G A 88 . DP=22;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,3,10,2;MQ=59;FQ=91;PV4=0.61,6.2e-08,0.2,1 GT:PL:GQ 0/1:118,0,183:99 chr2 29222388 . G C 27 . DP=14;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,6,1,5;MQ=58;FQ=30;PV4=1,1.1e-06,1,1 GT:PL:GQ 0/1:57,0,154:60 chr2 29226498 . G A 222 . DP=73;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,17,53;MQ=59;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr2 29226512 . A G 182 . DP=55;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,9,45;MQ=59;FQ=-190 GT:PL:GQ 1/1:215,163,0:99 chr2 29226559 . C T 97 . DP=22;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,19;MQ=59;FQ=-84 GT:PL:GQ 1/1:130,57,0:99 chr2 29239942 . T G 133 . DP=87;VDB=0.0345;AF1=0.5;AC1=1;DP4=33,11,34,7;MQ=59;FQ=136;PV4=0.43,1.3e-21,0.48,0.17 GT:PL:GQ 0/1:163,0,255:99 chr2 29240005 . T C 111 . DP=117;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,32,28,32;MQ=59;FQ=114;PV4=0.71,3.5e-42,1,1 GT:PL:GQ 0/1:141,0,255:99 chr2 29240060 . A G 89 . DP=80;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,35,3,28;MQ=59;FQ=92;PV4=0.053,2e-28,0.37,1 GT:PL:GQ 0/1:119,0,255:99 chr2 29240582 . T C 99 . DP=26;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,2,11,4;MQ=60;FQ=102;PV4=1,1.2e-09,1,0.063 GT:PL:GQ 0/1:129,0,184:99 chr2 29240673 . G A 116 . DP=50;VDB=0.0393;AF1=0.5;AC1=1;DP4=13,12,12,10;MQ=59;FQ=119;PV4=1,5.3e-12,1,0.091 GT:PL:GQ 0/1:146,0,255:99 chr2 29240686 . A C 132 . DP=45;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,13,9,11;MQ=59;FQ=135;PV4=1,8.4e-09,1,1 GT:PL:GQ 0/1:162,0,255:99 chr2 29240783 . A G 174 . DP=23;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,6,4,8;MQ=58;FQ=144;PV4=0.68,1,1,0.21 GT:PL:GQ 0/1:204,0,171:99 chr2 29274720 . A G 225 . DP=101;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,26,18,28;MQ=60;FQ=225;PV4=0.83,1,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr2 29287926 . CGCTGCTGCTGC CGCTGCTGCTGCTGC 217 . INDEL;DP=30;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,7,5,6;MQ=58;FQ=217;PV4=1,1,0.059,1 GT:PL:GQ 0/1:255,0,255:99 chr2 29294629 . C T 225 . DP=85;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,26,18,14;MQ=59;FQ=225;PV4=0.65,0.0022,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 29294754 . G C 225 . DP=36;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,13,5,10;MQ=60;FQ=225;PV4=1,0.41,1,0.26 GT:PL:GQ 0/1:255,0,255:99 chr2 29295016 . A G 225 . DP=58;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,15,14,16;MQ=60;FQ=225;PV4=1,0.24,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 29295676 . G A 225 . DP=51;VDB=0.0384;AF1=0.5;AC1=1;DP4=16,13,9,12;MQ=60;FQ=225;PV4=0.57,0.0032,0.12,0.12 GT:PL:GQ 0/1:255,0,255:99 chr2 29296870 . C T 69 . DP=102;VDB=0.0400;AF1=0.5;AC1=1;DP4=21,23,22,29;MQ=60;FQ=72;PV4=0.68,1.2e-46,1,0.45 GT:PL:GQ 0/1:99,0,255:99 chr2 29297068 . C T 137 . DP=47;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,15,9,12;MQ=60;FQ=140;PV4=1,6.6e-18,1,0.31 GT:PL:GQ 0/1:167,0,255:99 chr2 29356567 . G C 134 . DP=53;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,11,12,12;MQ=60;FQ=137;PV4=0.58,2.9e-18,1,1 GT:PL:GQ 0/1:164,0,255:99 chr2 29356669 . A G 193 . DP=49;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,19,3,14;MQ=60;FQ=196;PV4=0.2,0.49,1,0.27 GT:PL:GQ 0/1:223,0,255:99 chr2 29366875 . CACAG CACAGACAG 217 . INDEL;DP=43;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,18,1,17;MQ=56;FQ=217;PV4=0.36,1,0.021,1 GT:PL:GQ 0/1:255,0,255:99 chr2 29383256 . G T 225 . DP=70;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,23,7,25;MQ=59;FQ=225;PV4=0.29,1,0.47,1 GT:PL:GQ 0/1:255,0,255:99 chr2 29383374 . G A 107 . DP=15;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,13;MQ=60;FQ=-69 GT:PL:GQ 1/1:140,42,0:81 chr2 29390299 . AG A 217 . INDEL;DP=38;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,7,12,11;MQ=60;FQ=217;PV4=1,1,1,0.43 GT:PL:GQ 0/1:255,0,255:99 chr2 29416572 . T C 222 . DP=92;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,42,45;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 29419591 . G T 132 . DP=50;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,42,7;MQ=60;FQ=-175 GT:PL:GQ 1/1:165,148,0:99 chr2 29444095 . C T 132 . DP=15;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,13;MQ=60;FQ=-72 GT:PL:GQ 1/1:165,45,0:87 chr2 29446202 . G A 225 . DP=59;VDB=0.0244;AF1=0.5;AC1=1;DP4=21,3,29,5;MQ=60;FQ=210;PV4=1,0.43,1,1 GT:PL:GQ 0/1:255,0,237:99 chr2 29448410 . T G 27 . DP=39;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,10,11,0;MQ=56;FQ=30;PV4=0.0035,3.9e-06,0.017,1 GT:PL:GQ 0/1:57,0,255:60 chr2 29455267 . A G 222 . DP=39;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,14;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr2 29498210 . A G 76.1 . DP=6;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,5,1;MQ=56;FQ=-45 GT:PL:GQ 1/1:109,18,0:33 chr2 29519622 . C T 138 . DP=9;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:171,24,0:45 chr2 29525341 . A G 60 . DP=4;VDB=0.0017;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:92,9,0:16 chr2 29525345 . T C 40.5 . DP=5;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,4,0;MQ=54;FQ=-39 GT:PL:GQ 1/1:73,12,0:21 chr2 29541104 . C T 198 . DP=45;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,31,13;MQ=60;FQ=-159 GT:PL:GQ 1/1:231,132,0:99 chr2 29543663 . T C 157 . DP=24;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,20,3;MQ=60;FQ=-96 GT:PL:GQ 1/1:190,69,0:99 chr2 29917940 . C G 85 . DP=12;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,1,10;MQ=56;FQ=-60 GT:PL:GQ 1/1:118,33,0:63 chr2 29940529 . A T 222 . DP=120;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,65,50;MQ=60;FQ=-282;PV4=0.44,0.0014,0.46,1 GT:PL:GQ 1/1:255,255,0:99 chr2 30143499 . G C 26 . DP=4;VDB=0.0301;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:58,9,0:16 chr2 30480196 . C G 41 . DP=18;VDB=0.0164;AF1=0.5;AC1=1;DP4=9,0,9,0;MQ=60;FQ=44;PV4=1,5.7e-14,1,1 GT:PL:GQ 0/1:71,0,158:74 chr2 30682360 . G A 132 . DP=22;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,18,2;MQ=59;FQ=-87 GT:PL:GQ 1/1:165,60,0:99 chr2 30699346 . G A 134 . DP=27;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,12,2,8;MQ=60;FQ=137;PV4=1,0.1,1,0.19 GT:PL:GQ 0/1:164,0,255:99 chr2 30775299 . G A 28.5 . DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:61,12,0:21 chr2 30791152 . A G 34 . DP=11;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:67,30,0:56 chr2 30828792 . G A 161 . DP=24;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,21,0;MQ=58;FQ=-90 GT:PL:GQ 1/1:194,63,0:99 chr2 30955528 . C A 52 . DP=10;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,2,0,8;MQ=60;FQ=10.4;PV4=1,0.0027,1,0.14 GT:PL:GQ 0/1:82,0,37:40 chr2 30959262 . G T 128 . DP=43;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,3,16,7;MQ=59;FQ=131;PV4=0.3,1.9e-14,0.18,1 GT:PL:GQ 0/1:158,0,242:99 chr2 30973825 . C A 16.1 . DP=5;VDB=0.0080;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=17;PV4=1,0.063,1,1 GT:PL:GQ 0/1:46,0,48:47 chr2 30977073 . G A 225 . DP=47;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,12,11,7;MQ=60;FQ=225;PV4=0.76,0.017,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 30980940 . C T 180 . DP=19;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,5;MQ=60;FQ=-84 GT:PL:GQ 1/1:213,57,0:99 chr2 30986989 . G T 190 . DP=33;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,25,6;MQ=60;FQ=-120 GT:PL:GQ 1/1:223,93,0:99 chr2 31133939 . G C 225 . DP=77;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,20,14,20;MQ=59;FQ=225;PV4=0.49,0.4,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 31135184 . G T 138 . DP=27;VDB=0.0393;AF1=0.5;AC1=1;DP4=1,7,5,14;MQ=60;FQ=111;PV4=0.63,4.1e-10,1,0.014 GT:PL:GQ 0/1:168,0,138:99 chr2 31189236 . G A 78 . DP=36;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,16,2,14;MQ=60;FQ=81;PV4=1,1.7e-16,1,0.061 GT:PL:GQ 0/1:108,0,255:99 chr2 31397696 . G C 8.64 . DP=18;VDB=0.0329;AF1=0.5;AC1=1;DP4=3,11,1,3;MQ=60;FQ=11.3;PV4=1,0.0005,1,1 GT:PL:GQ 0/1:38,0,240:40 chr2 31399414 . G C 80 . DP=43;VDB=0.0099;AF1=0.5;AC1=1;DP4=21,2,19,1;MQ=59;FQ=83;PV4=1,1.8e-14,1,1 GT:PL:GQ 0/1:110,0,226:99 chr2 31399659 . T C 114 . DP=39;VDB=0.0216;AF1=0.5;AC1=1;DP4=5,16,6,12;MQ=59;FQ=117;PV4=0.72,8.4e-14,1,1 GT:PL:GQ 0/1:144,0,255:99 chr2 31399751 . T G 22 . DP=6;VDB=0.0059;AF1=0.5;AC1=1;DP4=2,0,2,2;MQ=60;FQ=23.6;PV4=0.47,1.9e-05,1,1 GT:PL:GQ 0/1:52,0,56:54 chr2 31399988 . C T 175 . DP=36;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,16,1,17;MQ=59;FQ=178;PV4=1,0.25,1,1 GT:PL:GQ 0/1:205,0,233:99 chr2 31400039 . A G 131 . DP=15;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,3,0,11;MQ=60;FQ=65;PV4=0.27,0.25,1,0.21 GT:PL:GQ 0/1:161,0,92:95 chr2 31400722 . G A 111 . DP=35;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,8,7,12;MQ=60;FQ=114;PV4=0.73,1.7e-16,1,1 GT:PL:GQ 0/1:141,0,255:99 chr2 31400867 . T C 25 . DP=5;VDB=0.0192;AF1=0.5;AC1=1;DP4=0,3,0,2;MQ=60;FQ=28;PV4=1,0.37,1,1 GT:PL:GQ 0/1:55,0,84:58 chr2 31401188 . A C 47 . DP=6;VDB=0.0060;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=56;FQ=47.5;PV4=1,1,0.19,1 GT:PL:GQ 0/1:77,0,78:77 chr2 31401290 . A C 215 . DP=53;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,38,9;MQ=60;FQ=-168 GT:PL:GQ 1/1:248,141,0:99 chr2 31403947 . G A 85 . DP=12;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,7,1,4;MQ=60;FQ=88;PV4=0.42,0.043,1,0.37 GT:PL:GQ 0/1:115,0,144:99 chr2 31409115 . T C 15.1 . DP=6;VDB=0.0116;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=17.9;PV4=1,0.11,1,1 GT:PL:GQ 0/1:45,0,60:48 chr2 31410653 . C T 88 . DP=96;VDB=0.0365;AF1=0.5;AC1=1;DP4=31,27,23,14;MQ=60;FQ=91;PV4=0.52,9.2e-38,0.037,1 GT:PL:GQ 0/1:118,0,255:99 chr2 31410708 . C T 222 . DP=108;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,49,49;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 31410728 . C A 89 . DP=100;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,28,17,23;MQ=59;FQ=92;PV4=0.54,1.6e-37,1,1 GT:PL:GQ 0/1:119,0,255:99 chr2 31411184 . C A 172 . DP=87;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,15,30,14;MQ=60;FQ=175;PV4=0.66,2.2e-31,1,1 GT:PL:GQ 0/1:202,0,255:99 chr2 31411242 . C A 85 . DP=98;VDB=0.0400;AF1=0.5;AC1=1;DP4=24,20,23,27;MQ=60;FQ=88;PV4=0.54,3.6e-40,1,1 GT:PL:GQ 0/1:115,0,255:99 chr2 31411310 . C T 225 . DP=64;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,25,9,19;MQ=60;FQ=225;PV4=0.78,1,1,0.1 GT:PL:GQ 0/1:255,0,255:99 chr2 31411365 . G A 57 . DP=14;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,8,0,5;MQ=58;FQ=60;PV4=1,0.06,1,1 GT:PL:GQ 0/1:87,0,168:90 chr2 31412443 . T C 25 . DP=31;VDB=0.0066;AF1=0.5;AC1=1;DP4=18,1,11,1;MQ=59;FQ=28;PV4=1,5.5e-10,0.11,0.38 GT:PL:GQ 0/1:55,0,215:58 chr2 31412646 . T C 225 . DP=90;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,34,12,32;MQ=59;FQ=225;PV4=0.81,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 31412670 . C T 225 . DP=60;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,26,8,23;MQ=59;FQ=225;PV4=0.18,0.33,1,0.15 GT:PL:GQ 0/1:255,0,255:99 chr2 31414223 . G A 54 . DP=14;VDB=0.0199;AF1=0.5;AC1=1;DP4=3,7,1,3;MQ=57;FQ=57;PV4=1,0.24,0.25,1 GT:PL:GQ 0/1:84,0,215:87 chr2 31414807 . C G 222 . DP=18;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,10,6;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr2 31416213 . T C 163 . DP=32;VDB=0.0393;AF1=0.5;AC1=1;DP4=0,10,7,15;MQ=59;FQ=106;PV4=0.069,1.3e-14,0.17,0.2 GT:PL:GQ 0/1:193,0,133:99 chr2 31424885 . C T 98 . DP=68;VDB=0.0345;AF1=0.5;AC1=1;DP4=20,11,20,16;MQ=60;FQ=101;PV4=0.62,7.6e-26,0.18,1 GT:PL:GQ 0/1:128,0,255:99 chr2 31467351 . T A 222 . DP=56;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,6,44;MQ=59;FQ=-151;PV4=1,0.088,1,0.19 GT:PL:GQ 1/1:255,124,0:99 chr2 31483890 . T C 103 . DP=9;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:136,15,0:27 chr2 31484334 . G A 125 . DP=45;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,40,3;MQ=60;FQ=-156 GT:PL:GQ 1/1:158,129,0:99 chr2 31488965 . C T 98 . DP=9;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:131,27,0:51 chr2 31567632 . T G 77 . DP=38;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,10,12,4;MQ=60;FQ=80;PV4=0.17,4.2e-12,1,0.37 GT:PL:GQ 0/1:107,0,255:99 chr2 31567743 . T C 195 . DP=32;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,26;MQ=60;FQ=-123 GT:PL:GQ 1/1:228,96,0:99 chr2 31569471 . A G 61 . DP=13;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:94,39,0:75 chr2 31570376 . T C 222 . DP=19;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,15,4;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr2 31570626 . C T 60 . DP=10;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:93,30,0:57 chr2 31570631 . A G 49 . DP=8;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:82,24,0:45 chr2 31571148 . T C 212 . DP=41;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,12,5,11;MQ=60;FQ=215;PV4=0.33,1,1,1 GT:PL:GQ 0/1:242,0,255:99 chr2 31571241 . G C 222 . DP=28;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,9,18;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr2 31571786 . A G 193 . DP=54;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,22;MQ=60;FQ=-181 GT:PL:GQ 1/1:226,154,0:99 chr2 31572398 . A G 73.5 . DP=4;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:106,12,0:21 chr2 31572482 . TGGGG TGGGGG 198 . INDEL;DP=37;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,11;MQ=60;FQ=-143 GT:PL:GQ 1/1:239,108,0:99 chr2 31587235 . G A 222 . DP=17;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,4,13;MQ=60;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr2 31588288 . T A 222 . DP=55;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,28,24;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr2 31589654 . T C 20 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:52,9,0:15 chr2 31590759 . C T 222 . DP=18;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,15,3;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr2 31596955 . G A 70.1 . DP=7;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:103,21,0:39 chr2 31596963 . T C 17.1 . DP=5;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:49,9,0:15 chr2 31600017 . C T 106 . DP=57;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,22,7,19;MQ=59;FQ=109;PV4=1,9.2e-22,1,0.25 GT:PL:GQ 0/1:136,0,255:99 chr2 31600146 . T C 114 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:147,15,0:27 chr2 31609448 . A C 204 . DP=28;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,9,18;MQ=60;FQ=-108 GT:PL:GQ 1/1:237,81,0:99 chr2 31611029 . G A 89.3 . DP=5;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:122,15,0:27 chr2 31611367 . T C 136 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:169,18,0:33 chr2 31805619 . T C 12 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr2 31805675 . A G 52 . DP=9;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:85,24,0:45 chr2 31805706 . G C 110 . DP=16;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,15,1;MQ=59;FQ=-75 GT:PL:GQ 1/1:143,48,0:93 chr2 31805880 . AGG AGGG 214 . INDEL;DP=32;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,15,15;MQ=59;FQ=-125 GT:PL:GQ 1/1:255,90,0:99 chr2 31806031 . C G 26.3 . DP=5;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:59,15,0:27 chr2 32188239 . A G 225 . DP=107;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,37,12,36;MQ=60;FQ=225;PV4=0.51,1,1,0.43 GT:PL:GQ 0/1:255,0,255:99 chr2 32402636 . C T 139 . DP=6;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-45 GT:PL:GQ 1/1:172,18,0:33 chr2 32418808 . T A 85 . DP=10;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:118,30,0:57 chr2 32466029 . A G 201 . DP=30;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,22,7;MQ=60;FQ=-114 GT:PL:GQ 1/1:234,87,0:99 chr2 32475109 . G A 205 . DP=118;VDB=0.0365;AF1=1;AC1=2;DP4=0,1,65,47;MQ=59;FQ=-282;PV4=0.42,0.00017,1,1 GT:PL:GQ 1/1:238,255,0:99 chr2 32476390 . T G 222 . DP=88;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,28,52;MQ=59;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr2 32481793 . ATTT ATT 214 . INDEL;DP=40;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,17;MQ=60;FQ=-155 GT:PL:GQ 1/1:255,120,0:99 chr2 32641041 . G A 225 . DP=78;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,19,21,27;MQ=60;FQ=225;PV4=0.48,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 32667058 . C A 51 . DP=12;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,11,0;MQ=58;FQ=-60 GT:PL:GQ 1/1:84,33,0:63 chr2 32667061 . T A 45 . DP=12;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,11,0;MQ=58;FQ=-60 GT:PL:GQ 1/1:78,33,0:63 chr2 32667182 . G C 222 . DP=112;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,73,32;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 32706579 . T A 43 . DP=8;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:76,24,0:45 chr2 32712875 . A C 174 . DP=56;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,6,49;MQ=59;FQ=-193 GT:PL:GQ 1/1:207,166,0:99 chr2 32713706 . A T 67.1 . DP=6;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,5,1;MQ=60;FQ=-45 GT:PL:GQ 1/1:100,18,0:33 chr2 32749903 . T C 25.5 . DP=4;VDB=0.0143;AF1=1;AC1=2;DP4=0,0,4,0;MQ=47;FQ=-39 GT:PL:GQ 1/1:58,12,0:21 chr2 32822957 . G A 222 . DP=50;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,10,34;MQ=59;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr2 32855615 . A G 207 . DP=10;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,7,3;MQ=60;FQ=-57 GT:PL:GQ 1/1:240,30,0:57 chr2 32860415 . C T 208 . DP=37;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,12,25;MQ=59;FQ=-138 GT:PL:GQ 1/1:241,111,0:99 chr2 32959024 . T C 222 . DP=95;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,18,71;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 32961691 . C T 137 . DP=14;VDB=0.0019;AF1=1;AC1=2;DP4=1,0,13,0;MQ=60;FQ=-39;PV4=1,1,1,1 GT:PL:GQ 1/1:169,12,0:21 chr2 32961745 . T A 78 . DP=42;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,3;MQ=59;FQ=-96 GT:PL:GQ 1/1:111,69,0:99 chr2 32983526 . C T 222 . DP=46;VDB=0.0373;AF1=1;AC1=2;DP4=0,1,17,23;MQ=60;FQ=-120;PV4=1,1,1,0.19 GT:PL:GQ 1/1:255,93,0:99 chr2 33174072 . A C 60 . DP=17;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,9,1,7;MQ=60;FQ=63;PV4=0.47,8.5e-08,1,1 GT:PL:GQ 0/1:90,0,151:93 chr2 33335847 . C T 171 . DP=55;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,47;MQ=60;FQ=-193 GT:PL:GQ 1/1:204,166,0:99 chr2 33392911 . G A 168 . DP=117;VDB=0.0399;AF1=0.5;AC1=1;DP4=30,35,20,26;MQ=59;FQ=171;PV4=0.85,4.6e-19,1,0.18 GT:PL:GQ 0/1:198,0,255:99 chr2 33407285 . G A 138 . DP=86;VDB=0.0322;AF1=0.5;AC1=1;DP4=37,13,24,12;MQ=60;FQ=141;PV4=0.48,4.4e-34,1,0.47 GT:PL:GQ 0/1:168,0,255:99 chr2 33412077 . G A 225 . DP=44;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,13,6,18;MQ=60;FQ=225;PV4=0.74,0.41,1,0.15 GT:PL:GQ 0/1:255,0,255:99 chr2 33413640 . G T 41 . DP=38;VDB=0.0216;AF1=0.5;AC1=1;DP4=16,1,18,2;MQ=59;FQ=44;PV4=1,6.5e-18,0.18,1 GT:PL:GQ 0/1:71,0,205:74 chr2 33413949 . G A 58 . DP=32;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,13,0,18;MQ=60;FQ=61;PV4=0.44,8e-14,1,0.081 GT:PL:GQ 0/1:88,0,197:91 chr2 33442549 . G A 27 . DP=13;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,0,8,0;MQ=58;FQ=30;PV4=1,0.0007,0.23,1 GT:PL:GQ 0/1:57,0,97:60 chr2 33447202 . C T 225 . DP=135;VDB=0.0380;AF1=0.5;AC1=1;DP4=35,37,36,24;MQ=60;FQ=225;PV4=0.22,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 33477964 . C T 12 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr2 33488419 . G A 225 . DP=33;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,7,11,8;MQ=59;FQ=211;PV4=0.73,1,0.2,0.5 GT:PL:GQ 0/1:255,0,238:99 chr2 33500848 . A G 165 . DP=107;VDB=0.0399;AF1=0.5;AC1=1;DP4=40,15,34,16;MQ=59;FQ=168;PV4=0.67,8.8e-24,1,0.37 GT:PL:GQ 0/1:195,0,255:99 chr2 33525407 . A G 51 . DP=7;VDB=0.0133;AF1=0.5;AC1=1;DP4=4,0,3,0;MQ=60;FQ=53.6;PV4=1,1,1,1 GT:PL:GQ 0/1:81,0,91:84 chr2 33540138 . G A 104 . DP=6;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:137,18,0:33 chr2 33540248 . G A 222 . DP=34;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,27,7;MQ=59;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr2 33568113 . A G 70 . DP=34;VDB=0.0359;AF1=0.5;AC1=1;DP4=4,16,4,9;MQ=60;FQ=73;PV4=0.68,1.3e-15,1,0.0029 GT:PL:GQ 0/1:100,0,255:99 chr2 33568137 . G A 115 . DP=24;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,14,1,7;MQ=60;FQ=118;PV4=1,0.19,1,1 GT:PL:GQ 0/1:145,0,237:99 chr2 33568191 . T C 55.1 . DP=6;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:88,18,0:33 chr2 33585796 . T C 222 . DP=105;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,39,63;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 33614187 . C T 80 . DP=12;VDB=0.0164;AF1=0.5;AC1=1;DP4=5,1,6,0;MQ=60;FQ=83;PV4=1,0.056,1,1 GT:PL:GQ 0/1:110,0,143:99 chr2 33744958 . C T 112 . DP=19;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,5,8,0;MQ=60;FQ=115;PV4=0.029,1,1,1 GT:PL:GQ 0/1:142,0,198:99 chr2 33745208 . T C 93 . DP=53;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,18,7,15;MQ=59;FQ=96;PV4=1,7.5e-22,1,1 GT:PL:GQ 0/1:123,0,255:99 chr2 33764286 . T C 101 . DP=30;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,12,5,8;MQ=60;FQ=104;PV4=0.71,5.9e-09,1,1 GT:PL:GQ 0/1:131,0,255:99 chr2 33784161 . G A 73 . DP=20;VDB=0.0359;AF1=0.5;AC1=1;DP4=5,9,1,5;MQ=59;FQ=76;PV4=0.61,0.12,0.065,1 GT:PL:GQ 0/1:103,0,255:99 chr2 33787976 . CCTAACTAACTAACTA CCTAACTAACTA 214 . INDEL;DP=23;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,14;MQ=49;FQ=-76.5 GT:PL:GQ 1/1:255,42,0:81 chr2 33952413 . T C 222 . DP=66;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,35,27;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr2 33952456 . C G,A 222 . DP=72;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,35,31;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0,253,172,250:99 chr2 33952621 . G A 225 . DP=91;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,14,34,20;MQ=60;FQ=225;PV4=1,0.38,1,0.41 GT:PL:GQ 0/1:255,0,255:99 chr2 35696612 . C T 30.5 . DP=4;VDB=0.0236;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:63,12,0:21 chr2 36668395 . T A 115 . DP=50;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,5,18,8;MQ=60;FQ=118;PV4=0.53,1.9e-20,0.18,1 GT:PL:GQ 0/1:145,0,255:99 chr2 36669645 . T C 4.77 . DP=8;VDB=0.0218;AF1=0.4999;AC1=1;DP4=4,0,3,0;MQ=57;FQ=6.98;PV4=1,0.00065,1,1 GT:PL:GQ 0/1:33,0,84:33 chr2 36669670 . C A 54 . DP=13;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,0,4,2;MQ=58;FQ=57;PV4=0.19,1e-05,1,1 GT:PL:GQ 0/1:84,0,128:87 chr2 36704144 . C T 170 . DP=64;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,10,16,13;MQ=60;FQ=173;PV4=0.59,4.5e-14,0.17,0.34 GT:PL:GQ 0/1:200,0,255:99 chr2 36739553 . T C 184 . DP=30;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,30;MQ=59;FQ=-117 GT:PL:GQ 1/1:217,90,0:99 chr2 36740643 . C G 4.13 . DP=9;VDB=0.0049;AF1=0.4998;AC1=1;DP4=4,1,4,0;MQ=60;FQ=6.2;PV4=1,3.2e-05,1,0.28 GT:PL:GQ 0/1:32,0,130:31 chr2 36756288 . T C 182 . DP=74;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,27,42;MQ=60;FQ=-235 GT:PL:GQ 1/1:215,208,0:99 chr2 36775315 . C G 41.5 . DP=5;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,3,1;MQ=54;FQ=-39 GT:PL:GQ 1/1:74,12,0:21 chr2 36775410 . ctttttttttttttttt cTTtttttttttttttttt,cTtttttttttttttttt 3.39 . INDEL;DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,3,4;MQ=57;FQ=-49.5 GT:PL:GQ 1/1:41,15,0,44,5,38:13 chr2 36779144 . T G 90 . DP=17;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,14,1;MQ=60;FQ=-72 GT:PL:GQ 1/1:123,45,0:87 chr2 36781401 . T C 222 . DP=39;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,20;MQ=59;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr2 36782656 . G A 132 . DP=19;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,17,2;MQ=58;FQ=-84 GT:PL:GQ 1/1:165,57,0:99 chr2 36783111 . C A 37 . DP=28;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,7,8,1;MQ=59;FQ=40;PV4=0.19,1.7e-07,1,0.32 GT:PL:GQ 0/1:67,0,255:70 chr2 36783127 . T C 195 . DP=30;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,7;MQ=59;FQ=-114 GT:PL:GQ 1/1:228,87,0:99 chr2 36783215 . C T 219 . DP=38;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,16,21;MQ=59;FQ=-138 GT:PL:GQ 1/1:252,111,0:99 chr2 36805676 . A G 151 . DP=38;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,28,5;MQ=59;FQ=-126 GT:PL:GQ 1/1:184,99,0:99 chr2 36806021 . G A 132 . DP=57;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,6,49;MQ=60;FQ=-193 GT:PL:GQ 1/1:165,166,0:99 chr2 36806051 . A G 184 . DP=28;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,28;MQ=60;FQ=-111 GT:PL:GQ 1/1:217,84,0:99 chr2 36808350 . C T 162 . DP=38;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,33,4;MQ=60;FQ=-138 GT:PL:GQ 1/1:195,111,0:99 chr2 36808732 . T G 144 . DP=47;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,7,40;MQ=60;FQ=-168 GT:PL:GQ 1/1:177,141,0:99 chr2 36810473 . G T 209 . DP=78;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,33,40;MQ=60;FQ=-247 GT:PL:GQ 1/1:242,220,0:99 chr2 36810586 . T C 222 . DP=32;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,4,26;MQ=59;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr2 36825137 . G A 10.2 . DP=2;VDB=0.0127;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:41,6,0:8 chr2 36943419 . T C 89 . DP=12;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:122,30,0:57 chr2 36994439 . A C 29 . DP=16;VDB=0.0027;AF1=0.5;AC1=1;DP4=1,11,0,3;MQ=60;FQ=32;PV4=1,1,1,1 GT:PL:GQ 0/1:59,0,188:62 chr2 37001570 . C T 222 . DP=20;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,13;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr2 37010574 . G A 147 . DP=95;VDB=0.0392;AF1=0.5;AC1=1;DP4=30,23,29,12;MQ=60;FQ=150;PV4=0.2,2.5e-24,1,1 GT:PL:GQ 0/1:177,0,255:99 chr2 37077015 . C A 81 . DP=12;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:114,33,0:63 chr2 37078095 . ATTTTTTTTTTTT ATTTTTTTTTTTTTT,ATTTTTTTTTTTTT 12 . INDEL;DP=6;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:52,15,0,53,8,50:22 chr2 37094945 . A G 110 . DP=19;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,15,3;MQ=60;FQ=-81 GT:PL:GQ 1/1:143,54,0:99 chr2 37152372 . A C 13.2 . DP=20;VDB=0.0359;AF1=0.5;AC1=1;DP4=4,9,3,3;MQ=56;FQ=16.1;PV4=0.62,1e-09,0.0029,0.33 GT:PL:GQ 0/1:43,0,253:46 chr2 37152425 . T C 23 . DP=9;VDB=0.0143;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=56;FQ=26;PV4=1,0.00075,0.045,1 GT:PL:GQ 0/1:53,0,113:56 chr2 37230888 . A G 110 . DP=12;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,3,0,8;MQ=60;FQ=74;PV4=0.33,0.15,1,1 GT:PL:GQ 0/1:140,0,101:99 chr2 37232927 . GTTTTTT GTTTTT 7.35 . INDEL;DP=33;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,14,0,17;MQ=60;FQ=9.7;PV4=0.47,1,1,0.05 GT:PL:GQ 0/1:44,0,56:45 chr2 37241050 . G A 175 . DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,17,15,24;MQ=59;FQ=178;PV4=0.41,4.4e-18,1,1 GT:PL:GQ 0/1:205,0,255:99 chr2 37248015 . T C 19.1 . DP=11;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=60;FQ=22;PV4=1,5.8e-05,1,0.31 GT:PL:GQ 0/1:49,0,103:52 chr2 37255015 . G A 161 . DP=10;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:194,30,0:57 chr2 37292890 . T G 75 . DP=31;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,9,10,2;MQ=58;FQ=78;PV4=0.12,2.3e-11,1,1 GT:PL:GQ 0/1:105,0,255:99 chr2 37297329 . C G 168 . DP=100;VDB=0.0244;AF1=0.5;AC1=1;DP4=29,13,45,11;MQ=59;FQ=171;PV4=0.24,1.5e-24,1,1 GT:PL:GQ 0/1:198,0,255:99 chr2 37302556 . gaaaaaaaaa gaaaaaaaa 3.82 . INDEL;DP=14;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-58.5 GT:PL:GQ 1/1:42,24,0:22 chr2 37306343 . G A 38.1 . DP=6;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,6,0;MQ=56;FQ=-45 GT:PL:GQ 1/1:71,18,0:33 chr2 37317869 . C T 222 . DP=14;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,5,9;MQ=58;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr2 37323427 . A G 6.98 . DP=8;VDB=0.0199;AF1=0.4999;AC1=1;DP4=2,2,0,4;MQ=60;FQ=9.53;PV4=0.43,0.00023,1,1 GT:PL:GQ 0/1:36,0,115:37 chr2 37373982 . A AT 214 . INDEL;DP=69;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,50,19;MQ=59;FQ=-243 GT:PL:GQ 1/1:255,208,0:99 chr2 37406644 . A G 225 . DP=94;VDB=0.0298;AF1=0.5;AC1=1;DP4=29,21,17,27;MQ=60;FQ=225;PV4=0.067,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 37406680 . C G 138 . DP=83;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,32,10,26;MQ=60;FQ=141;PV4=0.81,1e-28,1,1 GT:PL:GQ 0/1:168,0,255:99 chr2 37406761 . T C 30 . DP=27;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,16,0,9;MQ=59;FQ=33;PV4=0.54,2.1e-09,1,1 GT:PL:GQ 0/1:60,0,231:63 chr2 37415496 . G C 41 . DP=15;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,0,7,0;MQ=60;FQ=44;PV4=1,6.3e-07,1,0.46 GT:PL:GQ 0/1:71,0,139:74 chr2 37456032 . C T 200 . DP=38;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,8;MQ=59;FQ=-135 GT:PL:GQ 1/1:233,108,0:99 chr2 37458668 . G A 198 . DP=109;VDB=0.0392;AF1=0.5;AC1=1;DP4=27,20,29,29;MQ=60;FQ=201;PV4=0.56,3.1e-15,1,0.45 GT:PL:GQ 0/1:228,0,255:99 chr2 37459208 . C T 79 . DP=25;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,4,10,1;MQ=60;FQ=82;PV4=0.34,6.3e-06,1,1 GT:PL:GQ 0/1:109,0,227:99 chr2 37474386 . G A 123 . DP=24;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,2,9,4;MQ=60;FQ=126;PV4=0.65,8.9e-10,1,1 GT:PL:GQ 0/1:153,0,193:99 chr2 37505105 . T G 100 . DP=61;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,23,3,30;MQ=59;FQ=103;PV4=0.69,1e-24,0.1,0.33 GT:PL:GQ 0/1:130,0,255:99 chr2 37506939 . A G 88 . DP=41;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,11,8,7;MQ=59;FQ=91;PV4=1,1.1e-10,0.38,1 GT:PL:GQ 0/1:118,0,255:99 chr2 37513364 . T C 114 . DP=82;VDB=0.0399;AF1=0.5;AC1=1;DP4=30,15,24,12;MQ=60;FQ=117;PV4=1,1.2e-31,1,0.44 GT:PL:GQ 0/1:144,0,255:99 chr2 37513586 . A G 24 . DP=15;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,7,0,7;MQ=60;FQ=27;PV4=1,3.8e-07,1,0.21 GT:PL:GQ 0/1:54,0,138:57 chr2 37516481 . T C 50 . DP=21;VDB=0.0393;AF1=0.5;AC1=1;DP4=12,1,7,1;MQ=60;FQ=53;PV4=1,2.3e-09,1,0.49 GT:PL:GQ 0/1:80,0,204:83 chr2 37543371 . A G 193 . DP=35;VDB=0.0244;AF1=0.5;AC1=1;DP4=13,4,11,4;MQ=58;FQ=196;PV4=1,0.072,0.24,1 GT:PL:GQ 0/1:223,0,255:99 chr2 37579937 . C T 173 . DP=120;VDB=0.0365;AF1=0.5;AC1=1;DP4=36,23,40,19;MQ=60;FQ=176;PV4=0.56,6.6e-35,1,1 GT:PL:GQ 0/1:203,0,255:99 chr2 37579971 . C T 143 . DP=116;VDB=0.0365;AF1=0.5;AC1=1;DP4=23,29,28,32;MQ=60;FQ=146;PV4=0.85,1.2e-34,1,1 GT:PL:GQ 0/1:173,0,255:99 chr2 37586681 . A G 181 . DP=30;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,2,12,2;MQ=60;FQ=184;PV4=1,0.48,1,1 GT:PL:GQ 0/1:211,0,233:99 chr2 37587040 . C A 44 . DP=24;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,12,1,10;MQ=60;FQ=47;PV4=0.48,1.4e-16,1,0.18 GT:PL:GQ 0/1:74,0,170:77 chr2 37595696 . A C 181 . DP=76;VDB=0.0298;AF1=0.5;AC1=1;DP4=21,13,27,15;MQ=59;FQ=184;PV4=1,6.9e-17,0.057,1 GT:PL:GQ 0/1:211,0,255:99 chr2 37599688 . A G 180 . DP=29;VDB=0.0197;AF1=0.5;AC1=1;DP4=10,6,6,5;MQ=60;FQ=183;PV4=0.71,0.3,1,1 GT:PL:GQ 0/1:210,0,255:99 chr2 37599963 . A C 101 . DP=78;VDB=0.0164;AF1=0.5;AC1=1;DP4=5,32,3,38;MQ=59;FQ=104;PV4=0.47,3.1e-41,0.089,0.13 GT:PL:GQ 0/1:131,0,255:99 chr2 37599988 . G T 58 . DP=36;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,17,0,15;MQ=60;FQ=61;PV4=1,7e-16,1,1 GT:PL:GQ 0/1:88,0,216:91 chr2 38177525 . A C 62 . DP=43;VDB=0.0244;AF1=0.5;AC1=1;DP4=20,2,21,0;MQ=60;FQ=65;PV4=0.49,3.2e-19,1,0.48 GT:PL:GQ 0/1:92,0,242:95 chr2 38178406 . A G 129 . DP=39;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,6,15,5;MQ=60;FQ=132;PV4=0.72,9.4e-14,1,0.43 GT:PL:GQ 0/1:159,0,255:99 chr2 38179134 . G A 222 . DP=184;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,66,106;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 38179414 . CTGT CT 217 . INDEL;DP=37;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,11,7,14;MQ=60;FQ=217;PV4=0.73,8.6e-22,1,0.37 GT:PL:GQ 0/1:255,0,255:99 chr2 38298150 . A G 225 . DP=57;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,12,10,19;MQ=60;FQ=225;PV4=0.11,0.037,1,0.43 GT:PL:GQ 0/1:255,0,255:99 chr2 38298203 . C G 225 . DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,13,11,7;MQ=60;FQ=225;PV4=0.76,0.16,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 38302177 . C A 168 . DP=46;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,6,15,8;MQ=59;FQ=171;PV4=0.75,6.6e-08,1,1 GT:PL:GQ 0/1:198,0,255:99 chr2 38302390 . G C 11.3 . DP=12;VDB=0.0324;AF1=0.5;AC1=1;DP4=1,6,1,3;MQ=60;FQ=14.2;PV4=1,4.8e-06,1,1 GT:PL:GQ 0/1:41,0,157:43 chr2 38302544 . G A 19 . DP=3;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:51,9,0:15 chr2 38536626 . T G 31 . DP=21;VDB=0.0219;AF1=0.5;AC1=1;DP4=5,10,2,2;MQ=59;FQ=34;PV4=0.6,0.014,1,0.23 GT:PL:GQ 0/1:61,0,255:64 chr2 38537626 . A C 84 . DP=31;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,12,2,11;MQ=60;FQ=87;PV4=1,5.5e-11,1,1 GT:PL:GQ 0/1:114,0,241:99 chr2 38542573 . T C 27 . DP=9;VDB=0.0333;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=60;FQ=30;PV4=1,1.4e-05,1,0.24 GT:PL:GQ 0/1:57,0,118:60 chr2 38604351 . A G 143 . DP=9;VDB=0.0373;AF1=0.5;AC1=1;DP4=2,0,4,3;MQ=60;FQ=19.1;PV4=0.5,0.023,1,0.21 GT:PL:GQ 0/1:173,0,46:49 chr2 38827161 . A G 161 . DP=71;VDB=0.0373;AF1=0.5;AC1=1;DP4=6,29,9,25;MQ=60;FQ=164;PV4=0.39,7.4e-15,1,0.2 GT:PL:GQ 0/1:191,0,255:99 chr2 38903022 . T A 56 . DP=32;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,3,13,1;MQ=60;FQ=59;PV4=0.6,1.9e-12,0.15,1 GT:PL:GQ 0/1:86,0,242:89 chr2 38916906 . T C 225 . DP=49;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,2,29,3;MQ=60;FQ=183;PV4=1,0.12,0.24,1 GT:PL:GQ 0/1:255,0,210:99 chr2 38916970 . A T 98 . DP=100;VDB=0.0345;AF1=0.5;AC1=1;DP4=35,20,33,7;MQ=60;FQ=101;PV4=0.065,6.4e-40,0.41,1 GT:PL:GQ 0/1:128,0,255:99 chr2 38956947 . A G 129 . DP=46;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,5,39;MQ=59;FQ=-159 GT:PL:GQ 1/1:162,132,0:99 chr2 38977371 . C T 222 . DP=100;VDB=0.0392;AF1=1;AC1=2;DP4=0,2,15,80;MQ=60;FQ=-252;PV4=1,1,0.42,0.38 GT:PL:GQ 1/1:255,225,0:99 chr2 38977402 . T C 41 . DP=54;VDB=0.0190;AF1=1;AC1=2;DP4=0,2,1,48;MQ=60;FQ=-106;PV4=1,4e-17,1,1 GT:PL:GQ 1/1:74,79,0:99 chr2 39006603 . T G 222 . DP=14;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,10;MQ=60;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr2 39025555 . G A 222 . DP=124;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,42,77;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 39025632 . A G 160 . DP=52;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,8,43;MQ=60;FQ=-181 GT:PL:GQ 1/1:193,154,0:99 chr2 39030074 . C T 220 . DP=35;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,9,24;MQ=60;FQ=-126 GT:PL:GQ 1/1:253,99,0:99 chr2 39042639 . G A 222 . DP=115;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,77,38;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 39050019 . G T 166 . DP=8;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:199,24,0:45 chr2 39050061 . ATTT ATT 183 . INDEL;DP=21;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,19,2;MQ=60;FQ=-97.5 GT:PL:GQ 1/1:224,63,0:99 chr2 39050141 . A C 222 . DP=65;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,46,15;MQ=59;FQ=-184;PV4=1,1,1,1 GT:PL:GQ 1/1:255,157,0:99 chr2 39065729 . C A 63 . DP=20;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,19,0;MQ=60;FQ=-84 GT:PL:GQ 1/1:96,57,0:99 chr2 39075356 . A C 13.2 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:45,9,0:14 chr2 39082344 . T C 222 . DP=77;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,16,58;MQ=59;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr2 39088323 . G A 76 . DP=101;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,31,21,25;MQ=60;FQ=79;PV4=0.54,3.6e-59,0.47,0.22 GT:PL:GQ 0/1:106,0,255:99 chr2 39090696 . T C 161 . DP=63;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,4,55;MQ=59;FQ=-205 GT:PL:GQ 1/1:194,178,0:99 chr2 39117117 . G A 166 . DP=34;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,14;MQ=59;FQ=-123 GT:PL:GQ 1/1:199,96,0:99 chr2 39185048 . C T 77 . DP=15;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:110,39,0:75 chr2 39187190 . T C 172 . DP=21;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,14,7;MQ=60;FQ=-90 GT:PL:GQ 1/1:205,63,0:99 chr2 39187519 . A G 60.3 . DP=5;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:93,15,0:27 chr2 39198966 . A G 222 . DP=35;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,30,4;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr2 39214821 . A C 16.9 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:48,6,0:10 chr2 39224351 . G T 165 . DP=16;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,13,0;MQ=58;FQ=-66 GT:PL:GQ 1/1:198,39,0:75 chr2 39224615 . GTTTTTTT GTTTTTTTT 14.6 . INDEL;DP=25;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,21;MQ=59;FQ=-97.5 GT:PL:GQ 1/1:55,63,0:74 chr2 39233500 . G A 36.5 . DP=4;VDB=0.0126;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:69,12,0:21 chr2 39262068 . C T 222 . DP=33;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,3,28;MQ=59;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr2 39406572 . C A 106 . DP=24;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,22;MQ=60;FQ=-99 GT:PL:GQ 1/1:139,72,0:99 chr2 39440727 . G C 93 . DP=14;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,10;MQ=56;FQ=-63 GT:PL:GQ 1/1:126,36,0:69 chr2 39452861 . C T 132 . DP=15;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,11,2;MQ=58;FQ=-66 GT:PL:GQ 1/1:165,39,0:75 chr2 39479122 . G C 22 . DP=3;VDB=0.0098;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:54,9,0:15 chr2 39494197 . C T 197 . DP=11;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:230,33,0:63 chr2 39494469 . C G 98.3 . DP=5;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:131,15,0:27 chr2 39507417 . T A 194 . DP=21;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,11,10;MQ=60;FQ=-90 GT:PL:GQ 1/1:227,63,0:99 chr2 39514136 . T C 89 . DP=11;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:122,33,0:63 chr2 39514204 . G C 21.8 . DP=2;VDB=0.0135;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:53,6,0:10 chr2 39526842 . A C 33.5 . DP=4;VDB=0.0313;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:66,12,0:21 chr2 39553271 . A G 222 . DP=93;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,73,19;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 39564620 . C A 119 . DP=12;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,10,2;MQ=60;FQ=-63 GT:PL:GQ 1/1:152,36,0:69 chr2 39570427 . T C 87.5 . DP=4;VDB=0.0082;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:120,12,0:21 chr2 39583446 . A G 222 . DP=54;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,21,30;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr2 39944055 . G A 28 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:60,9,0:16 chr2 39993167 . T C 222 . DP=35;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,20,14;MQ=59;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr2 40006430 . A C 24.8 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:56,6,0:10 chr2 40006442 . C T 3.98 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr2 40392313 . G C 86.1 . DP=8;VDB=0.0001;AF1=0.5064;AC1=1;DP4=0,1,0,5;MQ=60;FQ=-11.3;PV4=1,1,1,1 GT:PL:GQ 0/1:116,0,16:19 chr2 40402064 . A T 94 . DP=11;VDB=0.0392;AF1=0.5;AC1=1;DP4=0,2,3,6;MQ=60;FQ=13.2;PV4=1,3.3e-06,1,0.43 GT:PL:GQ 0/1:124,0,40:43 chr2 40402275 . G A 54.1 . DP=6;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:87,18,0:33 chr2 40403104 . A G 222 . DP=38;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,30,6;MQ=60;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr2 40404839 . C T 225 . DP=77;VDB=0.0365;AF1=0.5;AC1=1;DP4=29,6,34,6;MQ=60;FQ=225;PV4=1,0.068,1,0.23 GT:PL:GQ 0/1:255,0,255:99 chr2 40564500 . G A 124 . DP=31;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,4,11,5;MQ=60;FQ=127;PV4=1,3.8e-08,1,1 GT:PL:GQ 0/1:154,0,238:99 chr2 40564557 . G C 225 . DP=27;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,8,5,9;MQ=60;FQ=212;PV4=1,0.11,1,0.25 GT:PL:GQ 0/1:255,0,239:99 chr2 40655563 . Ccacacacacacacacacacacacacacaca Ccacacacacacacacacacacacacaca 98.5 . INDEL;DP=12;VDB=0.0019;AF1=0.5;AC1=1;DP4=3,0,9,0;MQ=58;FQ=70.5;PV4=1,1,0.29,1 GT:PL:GQ 0/1:136,0,105:99 chr2 42492191 . A C 137 . DP=31;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,22;MQ=60;FQ=-111 GT:PL:GQ 1/1:170,84,0:99 chr2 42510018 . A G 124 . DP=61;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,21,10;MQ=59;FQ=-120 GT:PL:GQ 1/1:157,93,0:99 chr2 42511903 . A G 222 . DP=58;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,9,46;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr2 42515388 . A G 222 . DP=18;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,12,6;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr2 42515437 . A G 128 . DP=17;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,8;MQ=60;FQ=-78 GT:PL:GQ 1/1:161,51,0:99 chr2 42531871 . G T 46 . DP=3;VDB=0.0030;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:78,9,0:16 chr2 42553210 . C A 71 . DP=49;VDB=0.0164;AF1=0.5;AC1=1;DP4=22,1,21,4;MQ=60;FQ=74;PV4=0.35,7.9e-28,1,1 GT:PL:GQ 0/1:101,0,212:99 chr2 42560975 . A G 189 . DP=17;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,10,7;MQ=59;FQ=-78 GT:PL:GQ 1/1:222,51,0:99 chr2 42588195 . T C 159 . DP=57;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,48,7;MQ=60;FQ=-193 GT:PL:GQ 1/1:192,166,0:99 chr2 42719860 . GC GCC 212 . INDEL;DP=27;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,17,4;MQ=42;FQ=-97.5 GT:PL:GQ 1/1:253,63,0:99 chr2 42795954 . T C 62.3 . DP=6;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:95,15,0:27 chr2 42836516 . A G 51 . DP=13;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:84,33,0:63 chr2 42925079 . TTTCTTCTTCT TTTCTTCT 65.5 . INDEL;DP=11;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,7,0,3;MQ=58;FQ=68.5;PV4=1,0.008,0.066,1 GT:PL:GQ 0/1:103,0,234:99 chr2 42935961 . C T 222 . DP=21;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,5;MQ=59;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr2 42935979 . C T 139 . DP=22;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,16,6;MQ=59;FQ=-93 GT:PL:GQ 1/1:172,66,0:99 chr2 42990010 . C A 14.2 . DP=16;VDB=0.0001;AF1=0.5;AC1=1;DP4=8,2,5,0;MQ=58;FQ=17.1;PV4=0.52,2.9e-05,0.082,1 GT:PL:GQ 0/1:44,0,184:47 chr2 42990101 . G C 176 . DP=80;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,25,23,14;MQ=60;FQ=179;PV4=0.072,9.6e-18,1,1 GT:PL:GQ 0/1:206,0,255:99 chr2 42990336 . T G 222 . DP=50;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,21,28;MQ=59;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr2 42990522 . C T 225 . DP=45;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,15,8,13;MQ=58;FQ=225;PV4=1,0.19,0.031,0.36 GT:PL:GQ 0/1:255,0,255:99 chr2 42991200 . C G 158 . DP=55;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,11,12,14;MQ=60;FQ=161;PV4=0.41,8.4e-15,0.15,0.29 GT:PL:GQ 0/1:188,0,255:99 chr2 42996759 . Aagagagagagagagag Aagagagagagag 214 . INDEL;DP=12;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,6,6;MQ=47;FQ=-70.5 GT:PL:GQ 1/1:255,36,0:69 chr2 43011169 . G T 20 . DP=9;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,4,0,5;MQ=60;FQ=23;PV4=1,2.8e-05,1,1 GT:PL:GQ 0/1:50,0,96:53 chr2 43015612 . G T 222 . DP=36;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,26,10;MQ=59;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr2 43015719 . T C 222 . DP=74;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,30,41;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr2 43015757 . G A 222 . DP=59;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,18,40;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr2 43015814 . G A 143 . DP=24;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,9,1,12;MQ=60;FQ=144;PV4=1,0.01,1,0.36 GT:PL:GQ 0/1:173,0,176:99 chr2 43019730 . A G 26 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:58,9,0:16 chr2 43451739 . cctgctgctgctgctgctgctg cCTGCTGctgctgctgctgctgctgctg 90.5 . INDEL;DP=10;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,0,4,1;MQ=55;FQ=93.5;PV4=1,0.32,0.097,1 GT:PL:GQ 0/1:128,0,163:99 chr2 43452183 . A G 112 . DP=16;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,2,9,2;MQ=58;FQ=36;PV4=0.52,0.29,0.28,1 GT:PL:GQ 0/1:142,0,63:66 chr2 43452334 . G A 189 . DP=82;VDB=0.0322;AF1=0.5;AC1=1;DP4=25,8,33,15;MQ=60;FQ=192;PV4=0.62,2.6e-17,0.21,0.35 GT:PL:GQ 0/1:219,0,255:99 chr2 43452618 . C T 67 . DP=18;VDB=0.0081;AF1=0.5;AC1=1;DP4=5,5,3,5;MQ=60;FQ=70;PV4=0.66,0.00019,1,1 GT:PL:GQ 0/1:97,0,199:99 chr2 43452793 . C G 21 . DP=27;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,2,12,0;MQ=60;FQ=24;PV4=0.48,5.7e-14,1,1 GT:PL:GQ 0/1:51,0,217:54 chr2 43455063 . CCACA CCA 217 . INDEL;DP=66;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,16,12,12;MQ=58;FQ=217;PV4=0.61,0.02,0.064,1 GT:PL:GQ 0/1:255,0,255:99 chr2 43514036 . G A 132 . DP=30;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,5,10,6;MQ=60;FQ=135;PV4=1,1.3e-12,1,0.2 GT:PL:GQ 0/1:162,0,253:99 chr2 43514226 . G A 114 . DP=21;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,7,4,8;MQ=60;FQ=117;PV4=0.66,1.6e-07,1,1 GT:PL:GQ 0/1:144,0,178:99 chr2 43519127 . T G 57 . DP=33;VDB=0.0081;AF1=0.5;AC1=1;DP4=17,2,12,2;MQ=60;FQ=60;PV4=1,1.9e-22,1,1 GT:PL:GQ 0/1:87,0,241:90 chr2 43625078 . T C 78 . DP=26;VDB=0.0190;AF1=0.5;AC1=1;DP4=7,3,12,2;MQ=60;FQ=81;PV4=0.61,2e-09,1,0.44 GT:PL:GQ 0/1:108,0,193:99 chr2 43625184 . T A 177 . DP=77;VDB=0.0400;AF1=0.5;AC1=1;DP4=19,18,19,19;MQ=59;FQ=180;PV4=1,3.2e-17,1,1 GT:PL:GQ 0/1:207,0,255:99 chr2 43732958 . C T 47 . DP=4;VDB=0.0080;AF1=0.5005;AC1=1;DP4=0,1,0,3;MQ=60;FQ=3.02;PV4=1,0.28,1,0.49 GT:PL:GQ 0/1:77,0,27:30 chr2 43871983 . T C 141 . DP=37;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,11,6,15;MQ=60;FQ=144;PV4=1,6.4e-14,1,1 GT:PL:GQ 0/1:171,0,238:99 chr2 43872032 . A G 28 . DP=9;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,4,0,5;MQ=60;FQ=31;PV4=1,0.0016,1,0.3 GT:PL:GQ 0/1:58,0,93:61 chr2 43902511 . G C 125 . DP=32;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,22,7;MQ=60;FQ=-114 GT:PL:GQ 1/1:158,87,0:99 chr2 43903066 . A G 222 . DP=114;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,52,56;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 43903354 . T C 192 . DP=98;VDB=0.0400;AF1=1;AC1=2;DP4=1,1,55,36;MQ=60;FQ=-257;PV4=1,1.4e-08,1,0.23 GT:PL:GQ 1/1:225,230,0:99 chr2 43903483 . T C 222 . DP=48;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,8,38;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr2 43926943 . T A 225 . DP=80;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,22,20,24;MQ=59;FQ=225;PV4=0.65,0.12,0.1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 43931176 . T C 225 . DP=101;VDB=0.0392;AF1=0.5;AC1=1;DP4=41,14,25,17;MQ=59;FQ=225;PV4=0.13,1,0.038,1 GT:PL:GQ 0/1:255,0,255:99 chr2 43931321 . G A 99 . DP=16;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,9,0,7;MQ=60;FQ=102;PV4=1,0.3,1,1 GT:PL:GQ 0/1:129,0,154:99 chr2 43947760 . T C 211 . DP=33;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,6,9,5;MQ=59;FQ=214;PV4=1,1,1,0.34 GT:PL:GQ 0/1:241,0,255:99 chr2 43953664 . A G 68 . DP=20;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,20;MQ=60;FQ=-87 GT:PL:GQ 1/1:101,60,0:99 chr2 43968167 . G A 102 . DP=49;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,15,10,9;MQ=60;FQ=105;PV4=0.77,6.2e-12,1,1 GT:PL:GQ 0/1:132,0,255:99 chr2 43985940 . C A 157 . DP=10;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:190,30,0:57 chr2 43991357 . A C 222 . DP=17;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,14,2;MQ=59;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr2 44004010 . T C 182 . DP=27;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,9,17;MQ=60;FQ=-105 GT:PL:GQ 1/1:215,78,0:99 chr2 44010620 . G A 140 . DP=12;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,8,4;MQ=60;FQ=-63 GT:PL:GQ 1/1:173,36,0:69 chr2 44021826 . T A 166 . DP=72;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,8,60;MQ=60;FQ=-206;PV4=1,0.0072,0.45,0.21 GT:PL:GQ 1/1:199,179,0:99 chr2 44022970 . T C 36 . DP=17;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,1,8,0;MQ=60;FQ=39;PV4=1,1.9e-10,1,0.48 GT:PL:GQ 0/1:66,0,183:69 chr2 44028013 . A T 91 . DP=21;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,4,9;MQ=60;FQ=-66 GT:PL:GQ 1/1:124,39,0:75 chr2 44032189 . C G 80 . DP=38;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,6,12,6;MQ=59;FQ=83;PV4=1,2.3e-19,1,1 GT:PL:GQ 0/1:110,0,255:99 chr2 44036800 . A G 62 . DP=13;VDB=0.0359;AF1=0.5;AC1=1;DP4=6,1,4,2;MQ=60;FQ=65;PV4=0.56,0.031,1,0.15 GT:PL:GQ 0/1:92,0,131:95 chr2 44036913 . T C 75 . DP=9;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,2,3,4;MQ=60;FQ=19.1;PV4=0.5,0.00016,1,0.44 GT:PL:GQ 0/1:105,0,46:49 chr2 44040401 . G C 225 . DP=77;VDB=0.0398;AF1=0.5;AC1=1;DP4=17,33,8,17;MQ=60;FQ=225;PV4=1,0.0014,1,0.1 GT:PL:GQ 0/1:255,0,255:99 chr2 44065936 . T G 22 . DP=5;VDB=0.0014;AF1=0.5016;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-6.19;PV4=1,7.9e-05,1,1 GT:PL:GQ 0/1:52,0,22:25 chr2 44066174 . T G 52 . DP=20;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,0,10,1;MQ=60;FQ=55;PV4=1,3.2e-07,1,1 GT:PL:GQ 0/1:82,0,120:85 chr2 44071625 . C A 137 . DP=54;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,15,11,11;MQ=60;FQ=140;PV4=1,8.1e-21,1,1 GT:PL:GQ 0/1:167,0,255:99 chr2 44071639 . C T 74 . DP=52;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,15,12,9;MQ=60;FQ=77;PV4=0.58,4.3e-28,1,0.11 GT:PL:GQ 0/1:104,0,255:99 chr2 44071743 . A G 225 . DP=43;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,13,8,15;MQ=60;FQ=216;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,243:99 chr2 44079004 . T C 88 . DP=30;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,18,3,7;MQ=59;FQ=91;PV4=0.1,3.1e-11,1,1 GT:PL:GQ 0/1:118,0,209:99 chr2 44101214 . CA C 10.8 . INDEL;DP=7;VDB=0.0001;AF1=0.5;AC1=1;DP4=0,5,0,2;MQ=60;FQ=13.7;PV4=1,0.2,1,1 GT:PL:GQ 0/1:48,0,120:50 chr2 44101430 . T G 98 . DP=19;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,17,0;MQ=57;FQ=-78 GT:PL:GQ 1/1:131,51,0:99 chr2 44101538 . C T 30 . DP=69;VDB=0.0365;AF1=0.5;AC1=1;DP4=23,21,9,12;MQ=59;FQ=33;PV4=0.6,6.3e-28,1,1 GT:PL:GQ 0/1:60,0,255:63 chr2 44101649 . GCCCCCC GCCCCCCCCC,GCCCCCCC 163 . INDEL;DP=24;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,0,20;MQ=56;FQ=-64.5 GT:PL:GQ 1/1:248,74,44,226,0,196:57 chr2 44102235 . T C 194 . DP=26;VDB=0.0118;AF1=0.5;AC1=1;DP4=11,2,10,3;MQ=60;FQ=186;PV4=1,1,1,0.35 GT:PL:GQ 0/1:224,0,213:99 chr2 44102491 . C T 111 . DP=52;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,21,8,13;MQ=60;FQ=114;PV4=0.36,9.7e-17,1,0.47 GT:PL:GQ 0/1:141,0,255:99 chr2 44104925 . T C 222 . DP=82;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,37,42;MQ=60;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr2 44116836 . C T 225 . DP=67;VDB=0.0244;AF1=0.5;AC1=1;DP4=28,6,24,7;MQ=60;FQ=225;PV4=0.76,0.012,1,0.38 GT:PL:GQ 0/1:255,0,255:99 chr2 44123672 . TC T 124 . INDEL;DP=25;VDB=0.0053;AF1=0.5;AC1=1;DP4=9,1,15,0;MQ=59;FQ=127;PV4=0.4,9.3e-05,1,1 GT:PL:GQ 0/1:162,0,176:99 chr2 44123759 . G A 183 . DP=143;VDB=0.0380;AF1=0.5;AC1=1;DP4=36,22,53,30;MQ=59;FQ=186;PV4=0.86,7.1e-42,1,0.43 GT:PL:GQ 0/1:213,0,255:99 chr2 44145374 . G T 225 . DP=71;VDB=0.0365;AF1=0.5;AC1=1;DP4=28,7,24,11;MQ=59;FQ=225;PV4=0.41,0.19,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 44152180 . G A 116 . DP=75;VDB=0.0400;AF1=0.5;AC1=1;DP4=20,18,19,16;MQ=60;FQ=119;PV4=1,1.6e-28,1,0.23 GT:PL:GQ 0/1:146,0,255:99 chr2 44172444 . A C 163 . DP=92;VDB=0.0400;AF1=0.5;AC1=1;DP4=30,10,35,13;MQ=59;FQ=166;PV4=1,9.6e-32,1,0.26 GT:PL:GQ 0/1:193,0,255:99 chr2 44173422 . T G 52 . DP=51;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,24,1,23;MQ=60;FQ=55;PV4=1,4.2e-27,1,1 GT:PL:GQ 0/1:82,0,246:85 chr2 44187829 . A C 48 . DP=25;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,11,0,11;MQ=60;FQ=51;PV4=0.48,8.1e-19,1,0.33 GT:PL:GQ 0/1:78,0,236:81 chr2 44190687 . T A 94 . DP=51;VDB=0.0384;AF1=0.5;AC1=1;DP4=18,13,14,4;MQ=60;FQ=97;PV4=0.22,2.3e-14,1,0.48 GT:PL:GQ 0/1:124,0,255:99 chr2 44201376 . T C 138 . DP=164;VDB=0.0392;AF1=0.5;AC1=1;DP4=37,46,33,46;MQ=60;FQ=141;PV4=0.75,1e-66,0.27,1 GT:PL:GQ 0/1:168,0,255:99 chr2 44209477 . C T 142 . DP=56;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,17,8,18;MQ=60;FQ=145;PV4=0.77,3.5e-25,1,0.36 GT:PL:GQ 0/1:172,0,255:99 chr2 44471409 . T G 39 . DP=13;VDB=0.0183;AF1=0.5;AC1=1;DP4=8,2,2,1;MQ=60;FQ=42;PV4=1,1,1,1 GT:PL:GQ 0/1:69,0,198:72 chr2 44502788 . A C 222 . DP=108;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,59,43;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 44508835 . G A 62 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:94,9,0:16 chr2 44512971 . G A 222 . DP=17;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,5,12;MQ=60;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr2 44531484 . C T 16.1 . DP=40;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,25,0,15;MQ=59;FQ=19.1;PV4=1,1.2e-21,1,1 GT:PL:GQ 0/1:46,0,185:49 chr2 44547574 . G A 167 . DP=93;VDB=0.0399;AF1=0.5;AC1=1;DP4=29,18,22,22;MQ=59;FQ=170;PV4=0.3,1.5e-34,1,0.45 GT:PL:GQ 0/1:197,0,255:99 chr2 44548613 . T C 136 . DP=11;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,3,1,6;MQ=60;FQ=40;PV4=1,1,1,1 GT:PL:GQ 0/1:166,0,67:70 chr2 44550657 . C T 6.2 . DP=3;VDB=0.0145;AF1=0.5003;AC1=1;DP4=0,1,0,2;MQ=60;FQ=3.12;PV4=1,0.099,1,1 GT:PL:GQ 0/1:35,0,28:31 chr2 44556298 . T C 87 . DP=17;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,9,0,6;MQ=60;FQ=90;PV4=1,0.35,1,1 GT:PL:GQ 0/1:117,0,156:99 chr2 44569700 . AAATAAT AAAT 79.5 . INDEL;DP=13;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,5,0,6;MQ=49;FQ=82.5;PV4=1,2.2e-07,0.00027,0.0041 GT:PL:GQ 0/1:117,0,246:99 chr2 44570804 . C A 23 . DP=22;VDB=0.0014;AF1=0.5;AC1=1;DP4=14,0,8,0;MQ=60;FQ=26;PV4=1,2.6e-11,1,1 GT:PL:GQ 0/1:53,0,180:56 chr2 44617324 . T A 130 . DP=33;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,27,6;MQ=60;FQ=-126 GT:PL:GQ 1/1:163,99,0:99 chr2 44858687 . T C 121 . DP=45;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,39,4;MQ=59;FQ=-156 GT:PL:GQ 1/1:154,129,0:99 chr2 44942384 . C G 130 . DP=30;VDB=0.0019;AF1=0.5;AC1=1;DP4=12,3,14,0;MQ=59;FQ=133;PV4=0.22,0.35,0.15,0.37 GT:PL:GQ 0/1:160,0,240:99 chr2 44993487 . C T 118 . DP=11;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,0,8,0;MQ=60;FQ=35;PV4=1,1,1,1 GT:PL:GQ 0/1:148,0,62:65 chr2 45170153 . G A 52 . DP=6;VDB=0.0107;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=50.3;PV4=1,1,1,1 GT:PL:GQ 0/1:82,0,79:80 chr2 45171842 . A G 222 . DP=86;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,35,36;MQ=59;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr2 45647043 . C G 225 . DP=77;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,33,4,29;MQ=60;FQ=225;PV4=0.25,0.19,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 45773816 . C G 29 . DP=34;VDB=0.0019;AF1=0.5;AC1=1;DP4=21,2,10,0;MQ=60;FQ=32;PV4=1,4.7e-11,1,1 GT:PL:GQ 0/1:59,0,237:62 chr2 45774050 . G A 45 . DP=62;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,31,4,17;MQ=60;FQ=48;PV4=1,2e-23,1,1 GT:PL:GQ 0/1:75,0,255:78 chr2 45774548 . A C 217 . DP=31;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,4,14,3;MQ=60;FQ=199;PV4=0.67,1,1,1 GT:PL:GQ 0/1:247,0,226:99 chr2 45780962 . C G 37 . DP=26;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,9,1,16;MQ=60;FQ=40;PV4=1,6.4e-11,1,1 GT:PL:GQ 0/1:67,0,134:70 chr2 45826526 . CT C 206 . INDEL;DP=49;VDB=0.0271;AF1=0.5;AC1=1;DP4=22,2,22,3;MQ=60;FQ=201;PV4=1,0.02,1,1 GT:PL:GQ 0/1:244,0,236:99 chr2 46203796 . G A,C 59 . DP=27;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,5,19;MQ=60;FQ=-81 GT:PL:GQ 1/1:123,85,31,89,0,71:99 chr2 46207618 . G A 28 . DP=13;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,7,1,4;MQ=60;FQ=31;PV4=0.42,0.00026,1,1 GT:PL:GQ 0/1:58,0,125:61 chr2 46234568 . A G 225 . DP=87;VDB=0.0392;AF1=0.5;AC1=1;DP4=30,11,35,9;MQ=60;FQ=225;PV4=0.61,0.011,0.17,0.058 GT:PL:GQ 0/1:255,0,255:99 chr2 46584059 . T G 7.8 . DP=6;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=10.3;PV4=1,0.004,1,0.4 GT:PL:GQ 0/1:37,0,54:39 chr2 46602722 . T C 13 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr2 46603671 . C G 151 . DP=40;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,26,12;MQ=59;FQ=-141 GT:PL:GQ 1/1:184,114,0:99 chr2 46604972 . T C 69 . DP=39;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,5,11,4;MQ=60;FQ=72;PV4=1,1.7e-18,1,1 GT:PL:GQ 0/1:99,0,255:99 chr2 46605659 . A G 14.9 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:46,6,0:10 chr2 46605954 . G C 133 . DP=32;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,29;MQ=60;FQ=-120 GT:PL:GQ 1/1:166,93,0:99 chr2 46739157 . A G 225 . DP=54;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,6,22,4;MQ=60;FQ=225;PV4=0.73,0.21,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 46771134 . G C 6.79 . DP=3;VDB=0.0010;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:37,6,0:7 chr2 46799852 . G T 22 . DP=10;VDB=0.0033;AF1=0.5;AC1=1;DP4=3,0,6,1;MQ=60;FQ=24.9;PV4=1,2.8e-05,1,1 GT:PL:GQ 0/1:52,0,67:55 chr2 46818992 . C T 225 . DP=19;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,2,9,5;MQ=59;FQ=59;PV4=1,1,0.3,0.45 GT:PL:GQ 0/1:255,0,86:89 chr2 46819815 . A G 191 . DP=23;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,8,2,12;MQ=60;FQ=107;PV4=0.52,0.048,1,1 GT:PL:GQ 0/1:221,0,134:99 chr2 46839477 . T C 20.1 . DP=4;VDB=0.0075;AF1=0.5006;AC1=1;DP4=0,1,1,1;MQ=60;FQ=-3.54;PV4=1,0.3,1,0.33 GT:PL:GQ 0/1:50,0,26:29 chr2 46842410 . A G 30 . DP=12;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,5,0,7;MQ=60;FQ=33;PV4=1,5.2e-06,1,0.48 GT:PL:GQ 0/1:60,0,108:63 chr2 46845849 . A G 12.3 . DP=10;VDB=0.0180;AF1=0.5;AC1=1;DP4=2,6,0,2;MQ=58;FQ=15.1;PV4=1,1,1,1 GT:PL:GQ 0/1:42,0,181:44 chr2 46986416 . A G 225 . DP=76;VDB=0.0400;AF1=0.5;AC1=1;DP4=30,15,18,11;MQ=58;FQ=225;PV4=0.8,0.49,0.15,0.43 GT:PL:GQ 0/1:255,0,255:99 chr2 46987300 . T G 86 . DP=24;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,5,8,8;MQ=60;FQ=89;PV4=0.68,1.5e-08,1,1 GT:PL:GQ 0/1:116,0,154:99 chr2 47045267 . G A 21 . DP=28;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,2,8,1;MQ=60;FQ=24;PV4=1,9.8e-15,1,1 GT:PL:GQ 0/1:51,0,235:54 chr2 47045309 . C T 96 . DP=43;VDB=0.0393;AF1=0.5;AC1=1;DP4=16,7,11,6;MQ=60;FQ=99;PV4=1,1.8e-13,1,0.36 GT:PL:GQ 0/1:126,0,255:99 chr2 47045321 . A G 81 . DP=45;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,9,14,9;MQ=60;FQ=84;PV4=1,1.8e-20,1,0.3 GT:PL:GQ 0/1:111,0,255:99 chr2 47049409 . C T 28 . DP=24;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,14,0,9;MQ=60;FQ=31;PV4=1,8.1e-05,1,0.017 GT:PL:GQ 0/1:58,0,152:61 chr2 47085398 . C T 12.3 . DP=7;VDB=0.0050;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=15.1;PV4=1,0.00012,1,0.012 GT:PL:GQ 0/1:42,0,105:44 chr2 47177787 . G T 13.2 . DP=5;VDB=0.0089;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=15.6;PV4=1,0.005,1,0.33 GT:PL:GQ 0/1:43,0,52:45 chr2 47185438 . G A 115 . DP=20;VDB=0.0014;AF1=0.5;AC1=1;DP4=10,0,9,0;MQ=60;FQ=117;PV4=1,1,1,0.39 GT:PL:GQ 0/1:145,0,149:99 chr2 47220448 . CT CTT 96.5 . INDEL;DP=10;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,1,6,0;MQ=60;FQ=56.5;PV4=0.4,1,1,0.46 GT:PL:GQ 0/1:134,0,91:94 chr2 47220622 . G A 77 . DP=54;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,22,9,10;MQ=60;FQ=80;PV4=0.37,2.7e-20,1,1 GT:PL:GQ 0/1:107,0,255:99 chr2 47221693 . A G 225 . DP=57;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,18,6,22;MQ=60;FQ=225;PV4=0.38,0.39,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 47238383 . C A 130 . DP=46;VDB=0.0298;AF1=0.5;AC1=1;DP4=21,13,9,3;MQ=59;FQ=133;PV4=0.5,1,1,1 GT:PL:GQ 0/1:160,0,255:99 chr2 47251510 . G C 155 . DP=100;VDB=0.0345;AF1=0.5;AC1=1;DP4=33,13,36,17;MQ=60;FQ=158;PV4=0.83,6.1e-28,1,0.32 GT:PL:GQ 0/1:185,0,255:99 chr2 47251634 . T C 117 . DP=78;VDB=0.0216;AF1=0.5;AC1=1;DP4=7,27,8,31;MQ=59;FQ=120;PV4=1,2.4e-24,1,1 GT:PL:GQ 0/1:147,0,255:99 chr2 47251698 . T C 41 . DP=11;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=57;FQ=44;PV4=1,0.17,0.14,0.016 GT:PL:GQ 0/1:71,0,103:74 chr2 47348347 . C T 167 . DP=37;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,24;MQ=60;FQ=-138 GT:PL:GQ 1/1:200,111,0:99 chr2 47357458 . A G 222 . DP=56;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,44;MQ=59;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr2 47357564 . A T 9.31 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr2 47380203 . T C 138 . DP=11;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,4,7;MQ=60;FQ=-60 GT:PL:GQ 1/1:171,33,0:63 chr2 47382214 . C G 105 . DP=33;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,30,2;MQ=59;FQ=-123 GT:PL:GQ 1/1:138,96,0:99 chr2 47601106 . T C 225 . DP=57;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,12,21,7;MQ=60;FQ=225;PV4=0.26,0.31,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 47630550 . C G 18.1 . DP=7;VDB=0.0301;AF1=0.5;AC1=1;DP4=0,3,2,2;MQ=60;FQ=21;PV4=0.43,0.0002,1,0.41 GT:PL:GQ 0/1:48,0,77:51 chr2 47690404 . T C 9.52 . DP=9;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,4,1,3;MQ=54;FQ=12.3;PV4=1,1.8e-05,0.067,1 GT:PL:GQ 0/1:39,0,96:41 chr2 47690408 . A G 11.3 . DP=7;VDB=0.0224;AF1=0.5;AC1=1;DP4=0,4,1,2;MQ=53;FQ=14.2;PV4=0.43,0.025,0.031,1 GT:PL:GQ 0/1:41,0,88:43 chr2 47690411 . T C 14.2 . DP=6;VDB=0.0224;AF1=0.5;AC1=1;DP4=0,3,1,2;MQ=52;FQ=17.1;PV4=1,0.058,0.058,1 GT:PL:GQ 0/1:44,0,65:47 chr2 47693788 . A T 24 . DP=28;VDB=0.0118;AF1=0.5;AC1=1;DP4=11,7,10,0;MQ=60;FQ=27;PV4=0.03,1.8e-13,1,0.43 GT:PL:GQ 0/1:54,0,255:57 chr2 47693959 . G A 68 . DP=13;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,8,0,5;MQ=60;FQ=71;PV4=1,0.26,1,0.17 GT:PL:GQ 0/1:98,0,148:99 chr2 47739551 . A G 85 . DP=32;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,10,6,10;MQ=60;FQ=88;PV4=1,3.3e-16,1,0.21 GT:PL:GQ 0/1:115,0,255:99 chr2 47748292 . A G 124 . DP=6;VDB=0.0284;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:157,18,0:33 chr2 48023115 . T C 225 . DP=53;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,10,17,11;MQ=60;FQ=225;PV4=1,0.11,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 48025764 . C T 79 . DP=17;VDB=0.0053;AF1=0.5;AC1=1;DP4=9,2,6,0;MQ=60;FQ=82;PV4=0.51,0.05,1,1 GT:PL:GQ 0/1:109,0,226:99 chr2 48030458 . G C 222 . DP=20;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,17,2;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr2 48030838 . A T 30 . DP=46;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,20,4,11;MQ=59;FQ=33;PV4=0.4,2e-16,1,0.29 GT:PL:GQ 0/1:60,0,255:63 chr2 48032874 . ACTATCTATCT ACTATCT 32.5 . INDEL;DP=6;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,3,0,2;MQ=55;FQ=35.5;PV4=1,0.0025,0.14,1 GT:PL:GQ 0/1:70,0,137:73 chr2 48032937 . T C 4.61 . DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:34,6,0:5 chr2 48033272 . ATTTTTGTTTTAATTCCTTTTTTGTTTTAATTCCTTT ATTTTTGTTTTAATTCCTTT 5.08 . INDEL;DP=4;VDB=0.0033;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=47;FQ=7.36;PV4=1,1,0,1 GT:PL:GQ 0/1:41,0,98:41 chr2 48033546 . CTT CTTT 217 . INDEL;DP=125;VDB=0.0399;AF1=0.5;AC1=1;DP4=32,24,35,28;MQ=59;FQ=217;PV4=1,1,1,0.28 GT:PL:GQ 0/1:255,0,255:99 chr2 48040904 . GAAAAAA GAAAAAAA 86.5 . INDEL;DP=58;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,45,10;MQ=60;FQ=-201 GT:PL:GQ 1/1:127,166,0:99 chr2 48602252 . C T 133 . DP=105;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,32,17,40;MQ=59;FQ=136;PV4=1,3.1e-32,1,1 GT:PL:GQ 0/1:163,0,255:99 chr2 48681868 . C G 133 . DP=88;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,29,13,30;MQ=60;FQ=136;PV4=1,2.1e-29,0.17,1 GT:PL:GQ 0/1:163,0,255:99 chr2 48685417 . T C 32 . DP=10;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,3,0,6;MQ=60;FQ=35;PV4=0.4,3.9e-07,1,1 GT:PL:GQ 0/1:62,0,107:65 chr2 48687135 . G C 108 . DP=47;VDB=0.0298;AF1=0.5;AC1=1;DP4=27,9,10,1;MQ=60;FQ=111;PV4=0.41,1,0.035,1 GT:PL:GQ 0/1:138,0,255:99 chr2 48722994 . G C 225 . DP=23;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,4,5,14;MQ=58;FQ=10.4;PV4=0.54,1,1,1 GT:PL:GQ 0/1:255,0,37:40 chr2 48734576 . G A 213 . DP=62;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,50;MQ=60;FQ=-211 GT:PL:GQ 1/1:246,184,0:99 chr2 48734598 . A C 115 . DP=41;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,18,3,17;MQ=59;FQ=118;PV4=1,1.7e-17,0.16,0.18 GT:PL:GQ 0/1:145,0,255:99 chr2 48738371 . G T 3.01 . DP=8;VDB=0.0008;AF1=0.4998;AC1=1;DP4=2,0,4,0;MQ=60;FQ=4.77;PV4=1,6e-05,1,0.033 GT:PL:GQ 0/1:30,0,58:28 chr2 48738687 . G C 98 . DP=14;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,1,13;MQ=60;FQ=-69 GT:PL:GQ 1/1:131,42,0:81 chr2 48807796 . A C 130 . DP=88;VDB=0.0365;AF1=0.5;AC1=1;DP4=30,13,29,11;MQ=60;FQ=133;PV4=0.81,6.6e-26,1,1 GT:PL:GQ 0/1:160,0,255:99 chr2 48807976 . T C 68 . DP=105;VDB=0.0392;AF1=0.5;AC1=1;DP4=31,33,17,20;MQ=60;FQ=71;PV4=0.84,1.5e-35,0.095,0.24 GT:PL:GQ 0/1:98,0,255:99 chr2 48808152 . G C 225 . DP=137;VDB=0.0365;AF1=0.5;AC1=1;DP4=34,36,31,35;MQ=60;FQ=225;PV4=0.87,0.052,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr2 48808594 . C T 144 . DP=156;VDB=0.0345;AF1=0.5;AC1=1;DP4=35,54,32,35;MQ=60;FQ=147;PV4=0.33,4.3e-56,1,0.5 GT:PL:GQ 0/1:174,0,255:99 chr2 48808882 . T A 225 . DP=53;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,17,12,17;MQ=60;FQ=225;PV4=0.4,0.44,1,0.25 GT:PL:GQ 0/1:255,0,255:99 chr2 48808898 . C T 143 . DP=48;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,18,10,12;MQ=60;FQ=146;PV4=0.37,4.2e-19,1,0.2 GT:PL:GQ 0/1:173,0,255:99 chr2 48809593 . G T 171 . DP=63;VDB=0.0393;AF1=0.5;AC1=1;DP4=15,14,17,16;MQ=60;FQ=174;PV4=1,1.6e-23,0.18,0.48 GT:PL:GQ 0/1:201,0,255:99 chr2 48809756 . T C 6.98 . DP=10;VDB=0.0221;AF1=0.4999;AC1=1;DP4=0,7,0,3;MQ=60;FQ=9.53;PV4=1,3e-06,1,0.13 GT:PL:GQ 0/1:36,0,142:37 chr2 48822381 . G A 36 . DP=58;VDB=0.0271;AF1=0.5;AC1=1;DP4=25,8,15,8;MQ=59;FQ=39;PV4=0.55,6.1e-27,0.4,0.069 GT:PL:GQ 0/1:66,0,255:69 chr2 48844968 . C G 222 . DP=38;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,25,12;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr2 48873978 . A G 156 . DP=111;VDB=0.0345;AF1=0.5;AC1=1;DP4=29,30,22,28;MQ=60;FQ=159;PV4=0.7,6e-48,0.14,1 GT:PL:GQ 0/1:186,0,255:99 chr2 48898798 . T A 174 . DP=45;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,31;MQ=59;FQ=-156 GT:PL:GQ 1/1:207,129,0:99 chr2 48906625 . T C 184 . DP=24;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,7,16;MQ=60;FQ=-96 GT:PL:GQ 1/1:217,69,0:99 chr2 48915871 . A G 222 . DP=125;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,27,91;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 48921375 . T C 219 . DP=49;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,31,18;MQ=60;FQ=-175 GT:PL:GQ 1/1:252,148,0:99 chr2 48925746 . C T 111 . DP=22;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,18,4;MQ=60;FQ=-93 GT:PL:GQ 1/1:144,66,0:99 chr2 48950455 . C T 33 . DP=11;VDB=0.0011;AF1=0.5;AC1=1;DP4=4,0,7,0;MQ=58;FQ=36;PV4=1,1.9e-08,1,0.38 GT:PL:GQ 0/1:63,0,84:66 chr2 48952701 . C G 59.1 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:92,18,0:33 chr2 48956417 . C T 138 . DP=51;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,11,8,15;MQ=60;FQ=141;PV4=0.098,1.8e-18,1,1 GT:PL:GQ 0/1:168,0,255:99 chr2 48956431 . T A 119 . DP=51;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,13,15,14;MQ=60;FQ=122;PV4=0.57,2.9e-23,1,0.077 GT:PL:GQ 0/1:149,0,255:99 chr2 49003458 . C T 161 . DP=25;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,12,4,5;MQ=60;FQ=164;PV4=0.36,0.47,1,1 GT:PL:GQ 0/1:191,0,248:99 chr2 49189921 . C T 214 . DP=39;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,22,17;MQ=59;FQ=-144 GT:PL:GQ 1/1:247,117,0:99 chr2 49191041 . C T 176 . DP=27;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,22;MQ=60;FQ=-108 GT:PL:GQ 1/1:209,81,0:99 chr2 49215977 . G A 22 . DP=14;VDB=0.0216;AF1=0.5;AC1=1;DP4=5,0,8,0;MQ=60;FQ=25;PV4=1,9.7e-08,1,1 GT:PL:GQ 0/1:52,0,97:55 chr2 49216284 . C T 3.54 . DP=3;VDB=0.0192;AF1=0.5001;AC1=1;DP4=0,1,0,2;MQ=60;FQ=3.25;PV4=1,0.016,1,0.14 GT:PL:GQ 0/1:31,0,30:29 chr2 49241849 . G A 72 . DP=7;VDB=0.0049;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=56.9;PV4=1,0.015,1,1 GT:PL:GQ 0/1:102,0,84:87 chr2 49510173 . A C 177 . DP=100;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,38,58;MQ=60;FQ=-282 GT:PL:GQ 1/1:210,255,0:99 chr2 50201110 . A G 221 . DP=47;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,37,8;MQ=60;FQ=-162 GT:PL:GQ 1/1:254,135,0:99 chr2 50434759 . C G 142 . DP=17;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,2,8,1;MQ=59;FQ=144;PV4=0.58,0.38,0.18,0.26 GT:PL:GQ 0/1:172,0,178:99 chr2 50692560 . A G 225 . DP=33;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,4,10,5;MQ=60;FQ=225;PV4=0.7,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 50692819 . T G 17.1 . DP=4;VDB=0.0027;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:49,9,0:15 chr2 50693504 . AACA AA 217 . INDEL;DP=20;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,2,8,1;MQ=60;FQ=217;PV4=1,2.4e-16,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 50733860 . A G 59 . DP=11;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:92,30,0:57 chr2 50758657 . T C 53 . DP=8;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:86,24,0:45 chr2 50858107 . T A 28 . DP=11;VDB=0.0216;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=60;FQ=31;PV4=1,8.3e-07,1,1 GT:PL:GQ 0/1:58,0,114:61 chr2 50966283 . C T 186 . DP=10;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:219,30,0:57 chr2 51125707 . C G 93 . DP=26;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,4,9,8;MQ=60;FQ=96;PV4=1,3e-15,1,1 GT:PL:GQ 0/1:123,0,196:99 chr2 51146914 . A G 3.54 . DP=5;VDB=0.0165;AF1=0.4998;AC1=1;DP4=3,0,2,0;MQ=55;FQ=5.47;PV4=1,0.0019,1,1 GT:PL:GQ 0/1:31,0,69:30 chr2 51148872 . T A 8.44 . DP=2;VDB=0.0061;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr2 51149072 . T C 144 . DP=10;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,1,4,3;MQ=60;FQ=56;PV4=1,0.1,1,1 GT:PL:GQ 0/1:174,0,83:86 chr2 51149102 . T C 109 . DP=8;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,1,2,4;MQ=60;FQ=29;PV4=1,0.028,1,0.21 GT:PL:GQ 0/1:139,0,56:59 chr2 51150462 . A T 72 . DP=9;VDB=0.0334;AF1=0.5;AC1=1;DP4=5,0,3,1;MQ=57;FQ=74.2;PV4=0.44,0.4,1,0.25 GT:PL:GQ 0/1:102,0,109:99 chr2 51206342 . C G 41 . DP=55;VDB=0.0140;AF1=0.5;AC1=1;DP4=31,3,20,1;MQ=59;FQ=44;PV4=1,1.1e-17,0.37,1 GT:PL:GQ 0/1:71,0,255:74 chr2 53831866 . G A 97 . DP=18;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,1,4,2;MQ=60;FQ=100;PV4=0.51,0.26,1,1 GT:PL:GQ 0/1:127,0,180:99 chr2 53832072 . C T 225 . DP=103;VDB=0.0399;AF1=0.5;AC1=1;DP4=27,29,20,25;MQ=60;FQ=225;PV4=0.84,0.41,1,0.07 GT:PL:GQ 0/1:255,0,255:99 chr2 53927313 . TAC TACAC 198 . INDEL;DP=19;VDB=0.0014;AF1=0.5;AC1=1;DP4=11,0,8,0;MQ=60;FQ=189;PV4=1,1,1,0.49 GT:PL:GQ 0/1:236,0,224:99 chr2 53990532 . C T 142 . DP=21;VDB=0.0053;AF1=0.5;AC1=1;DP4=8,0,13,0;MQ=60;FQ=101;PV4=1,1,1,1 GT:PL:GQ 0/1:172,0,128:99 chr2 54014303 . A G 13.2 . DP=9;VDB=0.0006;AF1=0.5;AC1=1;DP4=3,1,5,0;MQ=60;FQ=16.1;PV4=0.44,0.00068,1,1 GT:PL:GQ 0/1:43,0,88:46 chr2 54035508 . G C 225 . DP=69;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,21,14,15;MQ=60;FQ=225;PV4=0.81,0.28,1,0.22 GT:PL:GQ 0/1:255,0,255:99 chr2 54081923 . T G 176 . DP=22;VDB=0.0384;AF1=0.5;AC1=1;DP4=3,7,3,8;MQ=60;FQ=165;PV4=1,1,1,0.12 GT:PL:GQ 0/1:206,0,192:99 chr2 54120820 . G A 58 . DP=20;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,6,3,4;MQ=60;FQ=61;PV4=1,1.1e-08,1,1 GT:PL:GQ 0/1:88,0,255:91 chr2 54122956 . A G 177 . DP=16;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,16;MQ=60;FQ=-75 GT:PL:GQ 1/1:210,48,0:93 chr2 54127041 . C T 122 . DP=74;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,19,21,18;MQ=60;FQ=125;PV4=0.48,8e-36,1,1 GT:PL:GQ 0/1:152,0,255:99 chr2 54131154 . C T 111 . DP=54;VDB=0.0398;AF1=0.5;AC1=1;DP4=19,9,17,7;MQ=60;FQ=114;PV4=1,1.4e-28,1,0.23 GT:PL:GQ 0/1:141,0,255:99 chr2 54150237 . A G 49 . DP=26;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,12,5,4;MQ=59;FQ=52;PV4=0.2,2.5e-17,1,0.05 GT:PL:GQ 0/1:79,0,255:82 chr2 54159999 . G A 74 . DP=53;VDB=0.0081;AF1=0.5;AC1=1;DP4=3,26,2,22;MQ=60;FQ=77;PV4=1,5.5e-26,1,1 GT:PL:GQ 0/1:104,0,255:99 chr2 54160059 . T C 25 . DP=3;VDB=0.0192;AF1=0.5006;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-3.53;PV4=1,0.48,1,1 GT:PL:GQ 0/1:55,0,26:29 chr2 54197829 . C A 138 . DP=18;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,5,5,4;MQ=60;FQ=138;PV4=0.64,0.16,1,0.17 GT:PL:GQ 0/1:168,0,169:99 chr2 54483272 . C A 222 . DP=44;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,11,27;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr2 54494370 . A G 76 . DP=20;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,18,1;MQ=59;FQ=-84 GT:PL:GQ 1/1:109,57,0:99 chr2 54587378 . C G 186 . DP=44;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,30,12;MQ=59;FQ=-153 GT:PL:GQ 1/1:219,126,0:99 chr2 54872482 . C T 137 . DP=64;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,20,12,12;MQ=60;FQ=140;PV4=1,7.1e-16,1,1 GT:PL:GQ 0/1:167,0,255:99 chr2 55040426 . A G 222 . DP=76;VDB=0.0345;AF1=1;AC1=2;DP4=0,1,25,46;MQ=60;FQ=-213;PV4=1,1,0.45,0.26 GT:PL:GQ 1/1:255,186,0:99 chr2 55071101 . Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 80.5 . INDEL;DP=18;VDB=0.0099;AF1=0.5;AC1=1;DP4=6,0,6,0;MQ=58;FQ=83.5;PV4=1,0.31,1,0.061 GT:PL:GQ 0/1:118,0,162:99 chr2 55077061 . A G 18.1 . DP=5;VDB=0.0008;AF1=0.505;AC1=1;DP4=1,0,3,0;MQ=54;FQ=-10.4;PV4=1,0.0099,1,0.049 GT:PL:GQ 0/1:48,0,17:20 chr2 55091029 . C T 101 . DP=27;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,9,5,7;MQ=60;FQ=104;PV4=1,2.8e-09,1,0.13 GT:PL:GQ 0/1:131,0,255:99 chr2 55093784 . T A 27 . DP=10;VDB=0.0008;AF1=0.5;AC1=1;DP4=5,0,4,0;MQ=60;FQ=30;PV4=1,0.00032,1,0.47 GT:PL:GQ 0/1:57,0,115:60 chr2 55093842 . G A 225 . DP=43;VDB=0.0271;AF1=0.5;AC1=1;DP4=15,3,19,6;MQ=59;FQ=218;PV4=0.71,0.23,1,1 GT:PL:GQ 0/1:255,0,245:99 chr2 55121930 . C G 116 . DP=16;VDB=0.0019;AF1=0.5;AC1=1;DP4=5,1,9,0;MQ=58;FQ=101;PV4=0.4,0.26,1,1 GT:PL:GQ 0/1:146,0,128:99 chr2 55122589 . A G 135 . DP=85;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,30,13,28;MQ=59;FQ=138;PV4=1,3e-35,0.48,0.3 GT:PL:GQ 0/1:165,0,255:99 chr2 55126730 . C G 22 . DP=6;VDB=0.0014;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=22;PV4=1,0.0069,1,1 GT:PL:GQ 0/1:52,0,52:52 chr2 55155672 . A G 225 . DP=112;VDB=0.0380;AF1=0.5;AC1=1;DP4=34,28,32,16;MQ=60;FQ=225;PV4=0.24,0.02,0.053,1 GT:PL:GQ 0/1:255,0,255:99 chr2 55176112 . C T 179 . DP=48;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,7,12,13;MQ=59;FQ=182;PV4=0.24,2.8e-10,1,0.47 GT:PL:GQ 0/1:209,0,255:99 chr2 55186229 . T C 117 . DP=25;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,22,3;MQ=60;FQ=-102 GT:PL:GQ 1/1:150,75,0:99 chr2 55186394 . A C 202 . DP=19;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,1,15;MQ=60;FQ=-75 GT:PL:GQ 1/1:235,48,0:93 chr2 55187297 . AGGGG AGGGGG 150 . INDEL;DP=30;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,26,4;MQ=60;FQ=-125 GT:PL:GQ 1/1:191,90,0:99 chr2 55189685 . C T 225 . DP=86;VDB=0.0322;AF1=0.5;AC1=1;DP4=29,14,29,14;MQ=60;FQ=225;PV4=1,0.27,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr2 55200800 . T G 222 . DP=22;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,7,15;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr2 55201038 . C T 222 . DP=17;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,12;MQ=58;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr2 55214618 . A C 132 . DP=18;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,16,2;MQ=60;FQ=-81 GT:PL:GQ 1/1:165,54,0:99 chr2 55214912 . C G 54.1 . DP=6;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:87,18,0:33 chr2 55404794 . G A 109 . DP=19;VDB=0.0190;AF1=0.5;AC1=1;DP4=9,3,6,1;MQ=60;FQ=112;PV4=1,0.16,1,1 GT:PL:GQ 0/1:139,0,241:99 chr2 55404925 . C T 202 . DP=29;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,11,3,11;MQ=60;FQ=205;PV4=1,0.24,1,0.066 GT:PL:GQ 0/1:232,0,255:99 chr2 55407754 . C T 222 . DP=97;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,33,60;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 55407935 . G A 51 . DP=9;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:84,27,0:51 chr2 55436934 . G A 152 . DP=103;VDB=0.0380;AF1=0.5;AC1=1;DP4=36,21,27,17;MQ=59;FQ=155;PV4=1,2.2e-31,1,1 GT:PL:GQ 0/1:182,0,255:99 chr2 55439963 . C A 222 . DP=16;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,2,14;MQ=59;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr2 55449318 . T C 55 . DP=10;VDB=0.0002;AF1=0.5;AC1=1;DP4=6,0,4,0;MQ=60;FQ=58;PV4=1,1,1,1 GT:PL:GQ 0/1:85,0,110:88 chr2 55449464 . T C 132 . DP=121;VDB=0.0399;AF1=0.5;AC1=1;DP4=33,30,20,33;MQ=59;FQ=135;PV4=0.14,1.2e-43,1,1 GT:PL:GQ 0/1:162,0,255:99 chr2 55470115 . C T 66 . DP=12;VDB=0.0019;AF1=0.5;AC1=1;DP4=6,1,5,0;MQ=56;FQ=69;PV4=1,1,0.038,1 GT:PL:GQ 0/1:96,0,152:99 chr2 55471382 . T C 182 . DP=38;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,18,1,17;MQ=59;FQ=184;PV4=1,1,0.48,0.0077 GT:PL:GQ 0/1:212,0,216:99 chr2 55471407 . T C 222 . DP=27;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,26;MQ=59;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr2 55473386 . CAT C 217 . INDEL;DP=55;VDB=0.0118;AF1=0.5;AC1=1;DP4=19,3,31,2;MQ=60;FQ=217;PV4=0.38,3.8e-07,1,0.054 GT:PL:GQ 0/1:255,0,255:99 chr2 55473681 . A C 61.1 . DP=7;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:94,21,0:39 chr2 55489629 . T C 26 . DP=11;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,6,0,5;MQ=60;FQ=29;PV4=1,3.5e-05,1,1 GT:PL:GQ 0/1:56,0,123:59 chr2 55490819 . G T 165 . DP=70;VDB=0.0365;AF1=0.5;AC1=1;DP4=28,7,25,10;MQ=59;FQ=168;PV4=0.58,2.3e-23,1,0.018 GT:PL:GQ 0/1:195,0,255:99 chr2 55518742 . T C 86 . DP=19;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,18,1;MQ=60;FQ=-84 GT:PL:GQ 1/1:119,57,0:99 chr2 55522422 . A G 213 . DP=72;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,35,34;MQ=60;FQ=-235 GT:PL:GQ 1/1:246,208,0:99 chr2 55527108 . G A 219 . DP=75;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,22,52;MQ=60;FQ=-250 GT:PL:GQ 1/1:252,223,0:99 chr2 55528257 . A C 172 . DP=22;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,18,4;MQ=60;FQ=-93 GT:PL:GQ 1/1:205,66,0:99 chr2 55599655 . G A 143 . DP=25;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,11,13;MQ=60;FQ=-99 GT:PL:GQ 1/1:176,72,0:99 chr2 55760940 . G T 222 . DP=45;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,41,2;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr2 55762957 . C T 119 . DP=5;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:152,15,0:27 chr2 55764754 . AATATGAATACATA AATA 195 . INDEL;DP=21;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,9;MQ=35;FQ=-76.5 GT:PL:GQ 1/1:236,42,0:81 chr2 55771050 . C G 126 . DP=21;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,19,2;MQ=60;FQ=-90 GT:PL:GQ 1/1:159,63,0:99 chr2 55771161 . A G 222 . DP=97;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,52,40;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 55805440 . T C 222 . DP=29;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,23;MQ=60;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr2 55812073 . T G 190 . DP=33;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,31,0;MQ=60;FQ=-120 GT:PL:GQ 1/1:223,93,0:99 chr2 55844445 . T C 124 . DP=22;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,21;MQ=60;FQ=-93 GT:PL:GQ 1/1:157,66,0:99 chr2 55883317 . G T 116 . DP=20;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,5;MQ=60;FQ=-87 GT:PL:GQ 1/1:149,60,0:99 chr2 55889062 . G A 222 . DP=12;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,8,4;MQ=60;FQ=-63 GT:PL:GQ 1/1:255,36,0:69 chr2 55894247 . T C 222 . DP=33;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,21;MQ=60;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr2 55899228 . A T 76 . DP=13;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:109,33,0:63 chr2 55908128 . C G 70 . DP=9;VDB=0.0333;AF1=0.5;AC1=1;DP4=1,4,0,4;MQ=60;FQ=73;PV4=1,1,1,1 GT:PL:GQ 0/1:100,0,129:99 chr2 55912120 . T C 178 . DP=23;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,6,16;MQ=60;FQ=-93 GT:PL:GQ 1/1:211,66,0:99 chr2 55914621 . T C 56.1 . DP=7;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:89,21,0:39 chr2 55920663 . T C 8.64 . DP=9;VDB=0.0003;AF1=0.5;AC1=1;DP4=5,0,4,0;MQ=60;FQ=11.3;PV4=1,4.3e-07,1,1 GT:PL:GQ 0/1:38,0,113:40 chr2 56098272 . G A 37 . DP=50;VDB=0.0359;AF1=0.5;AC1=1;DP4=6,22,2,18;MQ=59;FQ=40;PV4=0.44,6.9e-20,0.41,0.11 GT:PL:GQ 0/1:67,0,255:70 chr2 56149475 . C G 225 . DP=73;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,18,17,14;MQ=59;FQ=225;PV4=1,0.27,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 56216052 . G A 222 . DP=113;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,76,31;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 56611543 . CAAGAAGAA CAAGAAGAAGAA 217 . INDEL;DP=55;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,16,3,23;MQ=56;FQ=217;PV4=0.69,1,0.0066,1 GT:PL:GQ 0/1:255,0,255:99 chr2 58275666 . G A 214 . DP=28;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,8,7,6;MQ=60;FQ=217;PV4=0.7,0.018,1,1 GT:PL:GQ 0/1:244,0,255:99 chr2 58316814 . A G 225 . DP=37;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,7,12,5;MQ=59;FQ=225;PV4=1,0.25,1,0.27 GT:PL:GQ 0/1:255,0,255:99 chr2 58388696 . A G 106 . DP=37;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,10,13,8;MQ=59;FQ=109;PV4=0.18,2.7e-23,1,0.19 GT:PL:GQ 0/1:136,0,255:99 chr2 58392789 . T C 55 . DP=40;VDB=0.0066;AF1=0.5;AC1=1;DP4=19,1,20,0;MQ=58;FQ=58;PV4=1,5.2e-23,0.018,0.24 GT:PL:GQ 0/1:85,0,216:88 chr2 58392797 . TTTATT TTT 217 . INDEL;DP=47;VDB=0.0140;AF1=0.5;AC1=1;DP4=21,2,23,1;MQ=56;FQ=217;PV4=0.61,3.4e-16,0.0021,0.35 GT:PL:GQ 0/1:255,0,255:99 chr2 60768978 . G A 53.3 . DP=5;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:86,15,0:27 chr2 61007782 . A G 24 . DP=61;VDB=0.0190;AF1=0.5;AC1=1;DP4=25,2,30,1;MQ=60;FQ=27;PV4=0.59,3.3e-33,1,1 GT:PL:GQ 0/1:54,0,234:57 chr2 61008036 . C T 43.1 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:76,18,0:33 chr2 61009909 . C T 182 . DP=14;VDB=0.0322;AF1=0.5013;AC1=1;DP4=1,1,7,4;MQ=57;FQ=-5.45;PV4=1,1,0.29,1 GT:PL:GQ 0/1:212,0,23:26 chr2 61021349 . A G 54 . DP=12;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,6,1,5;MQ=58;FQ=57;PV4=1,0.00066,1,0.26 GT:PL:GQ 0/1:84,0,115:87 chr2 61121492 . G A 15.9 . DP=2;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:47,6,0:10 chr2 61175312 . T C 130 . DP=90;VDB=0.0380;AF1=0.5;AC1=1;DP4=30,14,29,16;MQ=59;FQ=133;PV4=0.82,1.1e-33,0.08,0.28 GT:PL:GQ 0/1:160,0,255:99 chr2 61180288 . C T 66 . DP=22;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,12,2,4;MQ=60;FQ=69;PV4=1,0.007,1,0.11 GT:PL:GQ 0/1:96,0,255:99 chr2 61235855 . C A 48 . DP=7;VDB=0.0017;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=49.6;PV4=1,0.095,1,0.15 GT:PL:GQ 0/1:78,0,82:80 chr2 61304002 . A G 41.3 . DP=5;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:74,15,0:27 chr2 61304271 . A G 65 . DP=43;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,16,4,16;MQ=59;FQ=68;PV4=0.5,3.6e-22,0.14,0.0069 GT:PL:GQ 0/1:95,0,255:98 chr2 61308517 . A G 98.1 . DP=7;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,5,2;MQ=60;FQ=-48 GT:PL:GQ 1/1:131,21,0:39 chr2 61349446 . G A 33.8 . DP=2;VDB=0.0141;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:65,6,0:10 chr2 61384906 . T C 12 . DP=2;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr2 61385100 . G A 163 . DP=19;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,4,13;MQ=59;FQ=-78 GT:PL:GQ 1/1:196,51,0:99 chr2 61385105 . G C 182 . DP=18;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,5,13;MQ=59;FQ=-81 GT:PL:GQ 1/1:215,54,0:99 chr2 61385248 . A G 4.61 . DP=2;VDB=0.0182;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:34,6,0:5 chr2 61389737 . T G 222 . DP=71;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,8,57;MQ=59;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr2 61389799 . G A 145 . DP=14;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:178,36,0:69 chr2 61413723 . A G 222 . DP=34;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,16,18;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr2 61415492 . A G 120 . DP=9;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,6,3;MQ=60;FQ=-54 GT:PL:GQ 1/1:153,27,0:51 chr2 61417617 . A G 222 . DP=39;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,22,16;MQ=59;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr2 61522123 . T C 140 . DP=33;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,7;MQ=60;FQ=-126 GT:PL:GQ 1/1:173,99,0:99 chr2 61575308 . A G 222 . DP=129;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,56,64;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 61576517 . G A 222 . DP=27;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,8,18;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr2 61622251 . C T 153 . DP=6;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-45 GT:PL:GQ 1/1:186,18,0:33 chr2 61722519 . GAAAAA GAAAAAA 38.5 . INDEL;DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-55.5 GT:PL:GQ 1/1:79,21,0:39 chr2 61729258 . A G 207 . DP=23;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,9;MQ=59;FQ=-96 GT:PL:GQ 1/1:240,69,0:99 chr2 61729268 . T C 222 . DP=28;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,17,10;MQ=59;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr2 61749690 . C T 200 . DP=9;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,7,2;MQ=60;FQ=-54 GT:PL:GQ 1/1:233,27,0:51 chr2 61749716 . C T 175 . DP=17;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,11,6;MQ=60;FQ=-78 GT:PL:GQ 1/1:208,51,0:99 chr2 62053546 . CGCTGC CGC 214 . INDEL;DP=35;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,30,5;MQ=54;FQ=-140 GT:PL:GQ 1/1:255,105,0:99 chr2 62066927 . A G 222 . DP=73;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,32,37;MQ=60;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr2 62074097 . G A 107 . DP=15;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:140,45,0:87 chr2 62074140 . aaca aACaca 127 . INDEL;DP=8;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-55.5 GT:PL:GQ 1/1:167,21,0:39 chr2 62081012 . A C 222 . DP=65;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,29;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr2 62095994 . A G 69.1 . DP=7;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:102,21,0:39 chr2 62107376 . T TC 47.5 . INDEL;DP=14;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,13,1;MQ=58;FQ=-76.5 GT:PL:GQ 1/1:88,42,0:80 chr2 62282474 . G A 22 . DP=13;VDB=0.0042;AF1=0.5;AC1=1;DP4=6,0,7,0;MQ=60;FQ=25;PV4=1,5.6e-05,1,1 GT:PL:GQ 0/1:52,0,117:55 chr2 62362995 . T C 225 . DP=59;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,11,22,5;MQ=60;FQ=225;PV4=0.24,0.026,1,0.052 GT:PL:GQ 0/1:255,0,255:99 chr2 62729674 . T C 225 . DP=64;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,22,4,28;MQ=60;FQ=225;PV4=0.49,0.011,1,0.27 GT:PL:GQ 0/1:255,0,255:99 chr2 62729747 . GAAAAAA GAAAAAAA 24.5 . INDEL;DP=24;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,5,5,4;MQ=60;FQ=27.5;PV4=1,1,1,1 GT:PL:GQ 0/1:62,0,85:65 chr2 62733253 . C T 139 . DP=60;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,26,5,22;MQ=60;FQ=142;PV4=1,1.8e-14,1,1 GT:PL:GQ 0/1:169,0,255:99 chr2 62738883 . C T 42 . DP=17;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,3,4,2;MQ=59;FQ=45;PV4=1,9.4e-08,0.1,0.5 GT:PL:GQ 0/1:72,0,217:75 chr2 62738931 . G C 225 . DP=31;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,4,12,4;MQ=59;FQ=225;PV4=1,1,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr2 62739135 . A C 58 . DP=5;VDB=0.0049;AF1=0.5013;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-5.45;PV4=1,0.33,1,0.42 GT:PL:GQ 0/1:88,0,23:26 chr2 63170905 . A G 118 . DP=21;VDB=0.0373;AF1=0.5;AC1=1;DP4=10,1,10,0;MQ=59;FQ=121;PV4=1,0.18,1,1 GT:PL:GQ 0/1:148,0,186:99 chr2 63176139 . A C 60 . DP=66;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,9,21,13;MQ=60;FQ=63;PV4=0.6,1.7e-29,1,1 GT:PL:GQ 0/1:90,0,255:93 chr2 63436532 . G T 20 . DP=5;VDB=0.0171;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=23;PV4=1,0.12,1,1 GT:PL:GQ 0/1:50,0,83:53 chr2 63486429 . C T 148 . DP=26;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,4,8,2;MQ=60;FQ=151;PV4=1,1,1,0.32 GT:PL:GQ 0/1:178,0,241:99 chr2 63540324 . A G 62 . DP=74;VDB=0.0345;AF1=0.5;AC1=1;DP4=30,14,20,7;MQ=60;FQ=65;PV4=0.79,1.4e-37,1,1 GT:PL:GQ 0/1:92,0,255:95 chr2 63540523 . A T 75 . DP=13;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:108,39,0:75 chr2 63605772 . A G 21 . DP=3;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:53,9,0:15 chr2 63609017 . A T 119 . DP=12;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,10,2;MQ=60;FQ=-63 GT:PL:GQ 1/1:152,36,0:69 chr2 63631830 . T C 75 . DP=28;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,10,2,14;MQ=60;FQ=78;PV4=1,1.5e-16,1,1 GT:PL:GQ 0/1:105,0,181:99 chr2 63666804 . T A 54 . DP=3;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:86,9,0:16 chr2 63719887 . T C 33 . DP=4;VDB=0.0176;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=31.3;PV4=1,1,1,1 GT:PL:GQ 0/1:63,0,60:61 chr2 63798333 . C T 138 . DP=16;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,13,3;MQ=60;FQ=-75 GT:PL:GQ 1/1:171,48,0:93 chr2 63822785 . T C 20.6 . DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:53,12,0:21 chr2 64069311 . G C 148 . DP=48;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,39,7;MQ=60;FQ=-165 GT:PL:GQ 1/1:181,138,0:99 chr2 64069732 . G A 89 . DP=19;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,17;MQ=59;FQ=-81 GT:PL:GQ 1/1:122,54,0:99 chr2 64082619 . G C 100 . DP=10;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,3,7;MQ=58;FQ=-57 GT:PL:GQ 1/1:133,30,0:57 chr2 64084005 . G A 222 . DP=29;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,1,24;MQ=59;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr2 64085114 . G A 204 . DP=59;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,25,33;MQ=59;FQ=-202 GT:PL:GQ 1/1:237,175,0:99 chr2 64126765 . A G 201 . DP=49;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,10,35;MQ=59;FQ=-162 GT:PL:GQ 1/1:234,135,0:99 chr2 64140301 . A T 166 . DP=17;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,12,4;MQ=59;FQ=-75 GT:PL:GQ 1/1:199,48,0:93 chr2 64682364 . A C 60 . DP=23;VDB=0.0140;AF1=0.5;AC1=1;DP4=11,0,11,0;MQ=60;FQ=63;PV4=1,5e-10,1,1 GT:PL:GQ 0/1:90,0,159:93 chr2 65131511 . A G 147 . DP=58;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,7,19,11;MQ=60;FQ=150;PV4=0.57,6.3e-18,0.18,1 GT:PL:GQ 0/1:177,0,255:99 chr2 65132099 . G A 96 . DP=96;VDB=0.0380;AF1=0.5;AC1=1;DP4=32,25,23,16;MQ=60;FQ=99;PV4=0.84,1.7e-38,1,0.25 GT:PL:GQ 0/1:126,0,255:99 chr2 65200618 . C A 77 . DP=32;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,6,9,6;MQ=60;FQ=80;PV4=1,2.3e-14,1,1 GT:PL:GQ 0/1:107,0,255:99 chr2 65231063 . GTTTTTTTTT GTTTTTTTT 8.18 . INDEL;DP=80;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,18,17,20;MQ=60;FQ=6.74;PV4=0.82,0.44,1,0.24 GT:PL:GQ 0/1:45,0,42:43 chr2 65245292 . G C 56 . DP=51;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,2,18,2;MQ=60;FQ=59;PV4=1,2.6e-15,1,1 GT:PL:GQ 0/1:86,0,232:89 chr2 65245534 . G C 107 . DP=12;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,4,0,7;MQ=60;FQ=65;PV4=1,0.14,1,0.28 GT:PL:GQ 0/1:137,0,92:95 chr2 65298839 . A G 134 . DP=75;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,25,11,26;MQ=60;FQ=137;PV4=1,1.1e-26,1,1 GT:PL:GQ 0/1:164,0,255:99 chr2 65299766 . T C 225 . DP=82;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,17,20,30;MQ=60;FQ=225;PV4=0.82,1,0.22,1 GT:PL:GQ 0/1:255,0,255:99 chr2 65315679 . T C 103 . DP=49;VDB=0.0244;AF1=0.5;AC1=1;DP4=22,4,20,3;MQ=60;FQ=106;PV4=1,2.2e-19,1,0.012 GT:PL:GQ 0/1:133,0,255:99 chr2 65315880 . G C 126 . DP=29;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,15,0,11;MQ=60;FQ=129;PV4=1,1,1,1 GT:PL:GQ 0/1:156,0,209:99 chr2 65318021 . T C 57 . DP=14;VDB=0.0004;AF1=0.5;AC1=1;DP4=4,0,9,0;MQ=60;FQ=58.3;PV4=1,2.4e-08,1,0.09 GT:PL:GQ 0/1:87,0,90:88 chr2 65318052 . C G 182 . DP=26;VDB=0.0033;AF1=0.5;AC1=1;DP4=10,0,15,1;MQ=60;FQ=124;PV4=1,0.22,1,0.31 GT:PL:GQ 0/1:212,0,151:99 chr2 65356904 . T C 33 . DP=11;VDB=0.0008;AF1=0.5;AC1=1;DP4=4,0,7,0;MQ=60;FQ=36;PV4=1,9.3e-08,1,0.4 GT:PL:GQ 0/1:63,0,88:66 chr2 65473930 . AAAATTTTC A 117 . INDEL;DP=33;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,15,2,13;MQ=48;FQ=120;PV4=1,7.4e-05,0,1 GT:PL:GQ 0/1:155,0,255:99 chr2 65481008 . A C 114 . DP=45;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,12,10,12;MQ=59;FQ=117;PV4=1,1e-15,0.49,0.3 GT:PL:GQ 0/1:144,0,255:99 chr2 65488538 . G A 61 . DP=33;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,15,2,12;MQ=59;FQ=64;PV4=1,5.8e-14,0.13,1 GT:PL:GQ 0/1:91,0,255:94 chr2 65495573 . ac aCc 63.5 . INDEL;DP=21;VDB=0.0081;AF1=0.5;AC1=1;DP4=12,0,7,2;MQ=60;FQ=66.5;PV4=0.17,5.8e-05,1,1 GT:PL:GQ 0/1:101,0,143:99 chr2 65495887 . G A 225 . DP=93;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,33,15,34;MQ=58;FQ=225;PV4=0.49,0.17,0.0098,0.5 GT:PL:GQ 0/1:255,0,255:99 chr2 65496018 . C G 49 . DP=10;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,3,0,7;MQ=60;FQ=40.7;PV4=1,0.00075,1,0.26 GT:PL:GQ 0/1:79,0,68:71 chr2 65540905 . C G 125 . DP=86;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,31,20,22;MQ=60;FQ=128;PV4=0.04,1.2e-16,0.16,1 GT:PL:GQ 0/1:155,0,255:99 chr2 65559027 . A G 222 . DP=45;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,32,12;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr2 65561392 . C T 200 . DP=162;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,92,62;MQ=59;FQ=-282 GT:PL:GQ 1/1:233,255,0:99 chr2 65604914 . A G 62.1 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:95,18,0:33 chr2 66665146 . T C 140 . DP=59;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,15,41;MQ=59;FQ=-196 GT:PL:GQ 1/1:173,169,0:99 chr2 66667186 . C T 34 . DP=3;VDB=0.0219;AF1=1;AC1=2;DP4=0,0,2,1;MQ=42;FQ=-36 GT:PL:GQ 1/1:66,9,0:16 chr2 66798282 . G T 55 . DP=9;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:88,24,0:45 chr2 67630980 . G A 162 . DP=66;VDB=0.0393;AF1=0.5;AC1=1;DP4=19,15,15,17;MQ=60;FQ=165;PV4=0.62,2.4e-24,1,1 GT:PL:GQ 0/1:192,0,255:99 chr2 67631831 . G A 88 . DP=41;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,10,8,9;MQ=59;FQ=91;PV4=0.75,3.1e-14,1,1 GT:PL:GQ 0/1:118,0,255:99 chr2 67632125 . C T 53 . DP=53;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,16,11,11;MQ=60;FQ=56;PV4=1,1.2e-34,0.12,0.29 GT:PL:GQ 0/1:83,0,255:86 chr2 67637196 . G A 205 . DP=99;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,24,74;MQ=60;FQ=-282 GT:PL:GQ 1/1:238,255,0:99 chr2 68364478 . T C 225 . DP=39;VDB=0.0398;AF1=0.5;AC1=1;DP4=10,7,10,11;MQ=59;FQ=225;PV4=0.53,0.36,1,0.38 GT:PL:GQ 0/1:255,0,255:99 chr2 68385097 . A G 124 . DP=39;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,4,9,11;MQ=60;FQ=127;PV4=0.17,8.6e-14,1,1 GT:PL:GQ 0/1:154,0,229:99 chr2 68408247 . C T 86 . DP=8;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=60;FQ=51;PV4=1,0.12,1,0.18 GT:PL:GQ 0/1:116,0,78:81 chr2 68592584 . T C 187 . DP=49;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,15,31;MQ=59;FQ=-165 GT:PL:GQ 1/1:220,138,0:99 chr2 68613710 . G A 222 . DP=37;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,11;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr2 68615654 . T C 122 . DP=135;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,35,39;MQ=59;FQ=-217;PV4=1,3.6e-08,0.43,1 GT:PL:GQ 1/1:155,190,0:99 chr2 68620410 . T A 120 . DP=66;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,19,44;MQ=59;FQ=-190;PV4=1,1.7e-11,1,0.25 GT:PL:GQ 1/1:153,163,0:99 chr2 68621338 . G T 171 . DP=39;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,7,30;MQ=60;FQ=-138 GT:PL:GQ 1/1:204,111,0:99 chr2 68621427 . G A 53 . DP=9;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:86,27,0:51 chr2 68622914 . G A 195 . DP=58;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,14,42;MQ=60;FQ=-196 GT:PL:GQ 1/1:228,169,0:99 chr2 68622952 . G C 222 . DP=31;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,27;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr2 68753240 . T A 55 . DP=39;VDB=0.0099;AF1=0.5;AC1=1;DP4=14,3,19,2;MQ=60;FQ=58;PV4=0.64,1.6e-22,1,1 GT:PL:GQ 0/1:85,0,250:88 chr2 68762501 . G A 225 . DP=58;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,14,16,17;MQ=59;FQ=225;PV4=0.79,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 68765205 . C T 132 . DP=104;VDB=0.0400;AF1=0.5;AC1=1;DP4=28,26,32,16;MQ=60;FQ=135;PV4=0.16,6.3e-49,1,0.078 GT:PL:GQ 0/1:162,0,255:99 chr2 68794528 . G T 33 . DP=13;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,6,2,4;MQ=60;FQ=36;PV4=0.45,1.7e-06,1,0.33 GT:PL:GQ 0/1:63,0,123:66 chr2 68882468 . T C 130 . DP=96;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,35,14,29;MQ=60;FQ=133;PV4=0.82,2.8e-36,1,0.44 GT:PL:GQ 0/1:160,0,255:99 chr2 69002760 . C T 225 . DP=50;VDB=0.0393;AF1=0.5;AC1=1;DP4=19,11,13,7;MQ=59;FQ=225;PV4=1,0.24,1,0.21 GT:PL:GQ 0/1:255,0,255:99 chr2 69034286 . A G 143 . DP=29;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,0,11,1;MQ=59;FQ=144;PV4=0.44,0.33,0.14,0.3 GT:PL:GQ 0/1:173,0,175:99 chr2 69043539 . G C 127 . DP=8;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:160,21,0:39 chr2 69173570 . C T 89 . DP=37;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,13,2,17;MQ=59;FQ=92;PV4=0.23,1e-13,1,1 GT:PL:GQ 0/1:119,0,255:99 chr2 69180161 . T A 17.1 . DP=12;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,7,0,5;MQ=60;FQ=20.1;PV4=1,1.3e-08,1,1 GT:PL:GQ 0/1:47,0,142:50 chr2 69201894 . C T 39 . DP=30;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,13,0,14;MQ=60;FQ=42;PV4=1,6.5e-15,1,0.24 GT:PL:GQ 0/1:69,0,197:72 chr2 69298817 . T C 146 . DP=28;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,1,12,6;MQ=60;FQ=134;PV4=0.36,6.5e-08,1,0.26 GT:PL:GQ 0/1:176,0,161:99 chr2 69317925 . G A 194 . DP=93;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,53,37;MQ=60;FQ=-282 GT:PL:GQ 1/1:227,255,0:99 chr2 69318129 . T G 24.5 . DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:57,12,0:21 chr2 69351621 . T A 93 . DP=14;VDB=0.0004;AF1=0.5;AC1=1;DP4=8,0,6,0;MQ=60;FQ=96;PV4=1,1,1,1 GT:PL:GQ 0/1:123,0,143:99 chr2 69565563 . TAAAA TAAA 121 . INDEL;DP=78;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,74,1;MQ=60;FQ=-261 GT:PL:GQ 1/1:162,226,0:99 chr2 69573029 . T C 222 . DP=21;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,15,4;MQ=60;FQ=-55;PV4=1,1,1,1 GT:PL:GQ 1/1:255,28,0:53 chr2 69586293 . A C 56.5 . DP=4;VDB=0.0199;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:89,12,0:21 chr2 69614161 . A G 222 . DP=30;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,15,15;MQ=59;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr2 69646504 . G A 90.5 . DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:123,12,0:21 chr2 69650730 . G A 3.54 . DP=11;VDB=0.0180;AF1=0.4998;AC1=1;DP4=4,3,4,0;MQ=60;FQ=5.47;PV4=0.24,3.2e-06,1,1 GT:PL:GQ 0/1:31,0,186:30 chr2 69709919 . A G 166 . DP=69;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,55;MQ=60;FQ=-226 GT:PL:GQ 1/1:199,199,0:99 chr2 69736561 . A G 89 . DP=44;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,23,2,14;MQ=58;FQ=92;PV4=1,0.00016,1,0.24 GT:PL:GQ 0/1:119,0,230:99 chr2 69741801 . C T 134 . DP=55;VDB=0.0400;AF1=0.5;AC1=1;DP4=21,8,19,6;MQ=60;FQ=137;PV4=1,5.5e-15,1,0.23 GT:PL:GQ 0/1:164,0,255:99 chr2 69741854 . T G 208 . DP=78;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,40,35;MQ=60;FQ=-253 GT:PL:GQ 1/1:241,226,0:99 chr2 69747909 . C A 15.1 . DP=10;VDB=0.0114;AF1=0.5;AC1=1;DP4=7,1,1,1;MQ=60;FQ=18.1;PV4=0.38,0.33,1,1 GT:PL:GQ 0/1:45,0,177:48 chr2 70064840 . T G 109 . DP=45;VDB=0.0081;AF1=0.5;AC1=1;DP4=11,15,10,9;MQ=60;FQ=112;PV4=0.56,1.8e-20,1,1 GT:PL:GQ 0/1:139,0,255:99 chr2 70315448 . A T 225 . DP=41;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,15,6,17;MQ=60;FQ=195;PV4=0.71,1,1,1 GT:PL:GQ 0/1:255,0,222:99 chr2 70676639 . A G 222 . DP=17;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,12,3;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr2 70900403 . G A 155 . DP=28;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,9,4,5;MQ=60;FQ=158;PV4=1,1,1,1 GT:PL:GQ 0/1:185,0,255:99 chr2 70901788 . GGTGTG GGTG 209 . INDEL;DP=28;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,0,19,0;MQ=55;FQ=186;PV4=1,0.00015,0.19,1 GT:PL:GQ 0/1:247,0,221:99 chr2 70905099 . T G 148 . DP=10;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:181,30,0:57 chr2 70906213 . T G 116 . DP=9;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,2,0,7;MQ=60;FQ=20.1;PV4=1,0.48,1,1 GT:PL:GQ 0/1:146,0,47:50 chr2 70910991 . C CA 154 . INDEL;DP=29;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,12,1,11;MQ=60;FQ=157;PV4=0.35,1,1,1 GT:PL:GQ 0/1:192,0,255:99 chr2 70917812 . C T 3.98 . DP=25;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr2 70919763 . C A 23 . DP=8;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=26;PV4=1,0.00066,1,1 GT:PL:GQ 0/1:53,0,98:56 chr2 70933636 . T C 30 . DP=20;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,9,1,6;MQ=59;FQ=33;PV4=1,2.1e-07,0.099,1 GT:PL:GQ 0/1:60,0,226:63 chr2 70933659 . T A 7.8 . DP=7;VDB=0.0116;AF1=0.5;AC1=1;DP4=0,4,0,3;MQ=60;FQ=10.4;PV4=1,0.009,1,1 GT:PL:GQ 0/1:37,0,90:39 chr2 70995129 . G A 71 . DP=18;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,9,3,5;MQ=60;FQ=74;PV4=0.27,2.8e-07,1,1 GT:PL:GQ 0/1:101,0,177:99 chr2 71004656 . attccttc attc 195 . INDEL;DP=17;VDB=0.0053;AF1=0.5;AC1=1;DP4=7,0,10,0;MQ=54;FQ=187;PV4=1,0.0022,0.03,1 GT:PL:GQ 0/1:233,0,222:99 chr2 71004978 . C T 52 . DP=15;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,3,0,11;MQ=57;FQ=19.1;PV4=1,4.5e-05,1,1 GT:PL:GQ 0/1:82,0,46:49 chr2 71012604 . G A 225 . DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,13,23,7;MQ=60;FQ=225;PV4=0.18,0.11,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 71017516 . A G 106 . DP=32;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,3,8,4;MQ=60;FQ=109;PV4=0.66,4.3e-06,1,0.3 GT:PL:GQ 0/1:136,0,198:99 chr2 71036482 . T C 26 . DP=11;VDB=0.0019;AF1=0.5;AC1=1;DP4=1,2,1,5;MQ=60;FQ=29;PV4=1,2.9e-05,1,1 GT:PL:GQ 0/1:56,0,80:59 chr2 71046470 . C T 27 . DP=23;VDB=0.0164;AF1=0.5;AC1=1;DP4=8,2,10,1;MQ=59;FQ=30;PV4=0.59,2.2e-14,1,0.48 GT:PL:GQ 0/1:57,0,191:60 chr2 71046701 . C A 47 . DP=15;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,5,0,9;MQ=60;FQ=50;PV4=0.4,0.00011,1,1 GT:PL:GQ 0/1:77,0,129:80 chr2 71058226 . C T 177 . DP=27;VDB=0.0393;AF1=0.5;AC1=1;DP4=11,5,7,4;MQ=58;FQ=180;PV4=1,0.11,0.4,1 GT:PL:GQ 0/1:207,0,255:99 chr2 71058835 . A G 225 . DP=32;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,3,15,4;MQ=60;FQ=158;PV4=1,0.49,1,1 GT:PL:GQ 0/1:255,0,185:99 chr2 71060037 . A G 177 . DP=17;VDB=0.0066;AF1=0.5;AC1=1;DP4=4,0,9,2;MQ=58;FQ=52;PV4=1,0.37,0.28,0.33 GT:PL:GQ 0/1:207,0,79:82 chr2 71060733 . A C 18.1 . DP=21;VDB=0.0042;AF1=0.5;AC1=1;DP4=10,0,10,0;MQ=60;FQ=21;PV4=1,2.2e-12,1,1 GT:PL:GQ 0/1:48,0,151:51 chr2 71061001 . T A 225 . DP=81;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,29,8,32;MQ=60;FQ=225;PV4=1,0.011,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 71061108 . G A 54 . DP=33;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,15,4,7;MQ=60;FQ=57;PV4=1,1.8e-10,1,0.41 GT:PL:GQ 0/1:84,0,255:87 chr2 71062648 . G A 46 . DP=15;VDB=0.0140;AF1=0.5;AC1=1;DP4=6,2,7,0;MQ=60;FQ=49;PV4=0.47,0.0021,1,0.48 GT:PL:GQ 0/1:76,0,163:79 chr2 71062833 . GC GCC 214 . INDEL;DP=71;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,37,32;MQ=60;FQ=-243 GT:PL:GQ 1/1:255,208,0:99 chr2 71160286 . A G 151 . DP=62;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,12,24,6;MQ=60;FQ=154;PV4=0.16,2.5e-14,1,1 GT:PL:GQ 0/1:181,0,255:99 chr2 71162996 . A G 159 . DP=21;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,17,3;MQ=60;FQ=-87 GT:PL:GQ 1/1:192,60,0:99 chr2 71163086 . T C 222 . DP=42;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,24,17;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr2 71163225 . C T 222 . DP=19;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,15;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr2 71205976 . A G 55 . DP=10;VDB=0.0305;AF1=0.5;AC1=1;DP4=1,1,2,4;MQ=60;FQ=15.1;PV4=1,0.0051,1,0.14 GT:PL:GQ 0/1:85,0,42:45 chr2 71211417 . C G 152 . DP=28;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,10,3,7;MQ=60;FQ=155;PV4=0.69,0.01,1,0.41 GT:PL:GQ 0/1:182,0,255:99 chr2 71211815 . G A 187 . DP=112;VDB=0.0345;AF1=0.5;AC1=1;DP4=31,20,35,21;MQ=60;FQ=190;PV4=1,1.1e-23,1,1 GT:PL:GQ 0/1:217,0,255:99 chr2 71211989 . A G 193 . DP=84;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,19,20,29;MQ=60;FQ=196;PV4=1,8.3e-14,1,1 GT:PL:GQ 0/1:223,0,255:99 chr2 71212129 . A T 225 . DP=51;VDB=0.0393;AF1=0.5;AC1=1;DP4=14,7,12,15;MQ=60;FQ=225;PV4=0.15,1,0.19,0.084 GT:PL:GQ 0/1:255,0,255:99 chr2 71220793 . T G 85 . DP=22;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,4,8,3;MQ=60;FQ=88;PV4=0.66,1.1e-06,1,1 GT:PL:GQ 0/1:115,0,198:99 chr2 71221822 . A G 107 . DP=23;VDB=0.0081;AF1=0.5;AC1=1;DP4=4,7,4,8;MQ=59;FQ=110;PV4=1,0.00049,1,1 GT:PL:GQ 0/1:137,0,204:99 chr2 71297695 . T C 225 . DP=48;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,12,10,10;MQ=60;FQ=225;PV4=0.77,1,1,0.47 GT:PL:GQ 0/1:255,0,255:99 chr2 71297982 . C T 225 . DP=132;VDB=0.0365;AF1=0.5;AC1=1;DP4=41,24,28,32;MQ=60;FQ=225;PV4=0.074,0.0093,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 71305456 . C T 120 . DP=95;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,29,21,23;MQ=56;FQ=123;PV4=0.39,7.8e-39,0.042,1 GT:PL:GQ 0/1:150,0,255:99 chr2 71351403 . C A 178 . DP=93;VDB=0.0400;AF1=0.5;AC1=1;DP4=24,22,28,18;MQ=60;FQ=181;PV4=0.53,4.3e-18,0.16,1 GT:PL:GQ 0/1:208,0,255:99 chr2 71357417 . C A 225 . DP=31;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,11,6,13;MQ=60;FQ=133;PV4=0.2,1,1,0.17 GT:PL:GQ 0/1:255,0,160:99 chr2 71357710 . G C 26 . DP=7;VDB=0.0113;AF1=0.5;AC1=1;DP4=2,2,3,0;MQ=60;FQ=29;PV4=0.43,0.35,1,0.16 GT:PL:GQ 0/1:56,0,94:59 chr2 71360144 . A C 71 . DP=81;VDB=0.0244;AF1=0.5;AC1=1;DP4=33,10,26,9;MQ=60;FQ=74;PV4=1,1.2e-49,0.21,0.39 GT:PL:GQ 0/1:101,0,255:99 chr2 71360282 . G A 225 . DP=126;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,38,31,37;MQ=60;FQ=225;PV4=0.2,0.18,0.09,0.25 GT:PL:GQ 0/1:255,0,255:99 chr2 71360625 . G T 167 . DP=74;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,14,19,22;MQ=57;FQ=170;PV4=0.48,7.8e-33,0.34,0.45 GT:PL:GQ 0/1:197,0,255:99 chr2 71360723 . A G 110 . DP=24;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,3,16;MQ=51;FQ=-84 GT:PL:GQ 1/1:143,57,0:99 chr2 71360735 . TTCCTCCTC TTCCTCCTCCTC 214 . INDEL;DP=16;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,11;MQ=44;FQ=-70.5 GT:PL:GQ 1/1:255,36,0:69 chr2 71361332 . T G 177 . DP=30;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,14,2,12;MQ=59;FQ=180;PV4=1,0.42,0.15,1 GT:PL:GQ 0/1:207,0,222:99 chr2 71365676 . G A 64 . DP=31;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,3,16,0;MQ=60;FQ=67;PV4=0.1,7e-13,1,0.47 GT:PL:GQ 0/1:94,0,237:97 chr2 71367198 . G A 10.4 . DP=11;VDB=0.0060;AF1=0.5;AC1=1;DP4=1,7,0,3;MQ=58;FQ=13.2;PV4=1,0.1,1,1 GT:PL:GQ 0/1:40,0,168:42 chr2 71375065 . A C 23 . DP=15;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,0,6,0;MQ=58;FQ=26;PV4=1,1e-06,1,1 GT:PL:GQ 0/1:53,0,152:56 chr2 71376999 . G A 22 . DP=15;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,5,3,2;MQ=58;FQ=25;PV4=1,1.3e-07,1,1 GT:PL:GQ 0/1:52,0,210:55 chr2 71417065 . G T 203 . DP=75;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,18,52;MQ=60;FQ=-238 GT:PL:GQ 1/1:236,211,0:99 chr2 71615571 . C T 90 . DP=11;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:123,30,0:57 chr2 71620818 . C T 131 . DP=44;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,10,18;MQ=60;FQ=-111 GT:PL:GQ 1/1:164,84,0:99 chr2 71626679 . CTTTT CTTT 105 . INDEL;DP=73;VDB=0.0298;AF1=0.5;AC1=1;DP4=34,1,33,5;MQ=59;FQ=61.5;PV4=0.2,0.00026,1,0.41 GT:PL:GQ 0/1:143,0,96:99 chr2 71627539 . C T 17.1 . DP=10;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,0,4,0;MQ=60;FQ=20.1;PV4=1,1.8e-05,1,0.23 GT:PL:GQ 0/1:47,0,133:50 chr2 71633275 . T C 131 . DP=43;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,9,14,10;MQ=59;FQ=134;PV4=0.76,3.4e-17,1,1 GT:PL:GQ 0/1:161,0,255:99 chr2 71633389 . C T 93 . DP=18;VDB=0.0053;AF1=0.5;AC1=1;DP4=3,8,0,7;MQ=60;FQ=96;PV4=0.25,0.14,1,0.041 GT:PL:GQ 0/1:123,0,237:99 chr2 71635931 . G T 153 . DP=25;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,18;MQ=60;FQ=-99 GT:PL:GQ 1/1:186,72,0:99 chr2 71645828 . G A 131 . DP=22;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,9,1,8;MQ=54;FQ=134;PV4=0.6,0.44,1,0.075 GT:PL:GQ 0/1:161,0,217:99 chr2 71645854 . TGTAGT TGT 139 . INDEL;DP=19;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,7,1,7;MQ=51;FQ=142;PV4=1,0.00018,0.02,0.16 GT:PL:GQ 0/1:177,0,255:99 chr2 71645890 . G C 97.3 . DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:130,15,0:27 chr2 71651939 . T A 214 . DP=28;VDB=0.0398;AF1=0.5;AC1=1;DP4=1,12,4,9;MQ=60;FQ=169;PV4=0.32,0.41,1,0.21 GT:PL:GQ 0/1:244,0,196:99 chr2 71661855 . CAAA CAAAA 160 . INDEL;DP=53;VDB=0.0140;AF1=0.5;AC1=1;DP4=26,1,23,3;MQ=60;FQ=124;PV4=0.35,1,1,0.015 GT:PL:GQ 0/1:198,0,159:99 chr2 71693943 . G A 86.1 . DP=6;VDB=0.0164;AF1=0.508;AC1=1;DP4=1,0,5,0;MQ=60;FQ=-12.3;PV4=1,1,1,1 GT:PL:GQ 0/1:116,0,15:18 chr2 71694113 . C T 181 . DP=40;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,8,10,14;MQ=60;FQ=184;PV4=1,3.4e-06,1,0.4 GT:PL:GQ 0/1:211,0,237:99 chr2 71708825 . tatccatccatccatccatccatccatccatccat tATCCatccatccatccatccatccatccatccatccat 98.4 . INDEL;DP=7;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:138,9,0:16 chr2 71708918 . C T 131 . DP=34;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,5,15,6;MQ=59;FQ=134;PV4=0.71,3.7e-11,0.13,1 GT:PL:GQ 0/1:161,0,226:99 chr2 71709120 . G A 23 . DP=15;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,5,0,7;MQ=58;FQ=26;PV4=0.46,4.9e-06,0.17,0.11 GT:PL:GQ 0/1:53,0,163:56 chr2 71747235 . A G 222 . DP=37;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,32,4;MQ=59;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr2 71747432 . G T 26.5 . DP=27;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,3;MQ=54;FQ=-39 GT:PL:GQ 1/1:59,12,0:21 chr2 71747851 . T C 38.5 . DP=4;VDB=0.0236;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:71,12,0:21 chr2 71747899 . G A 93 . DP=12;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:126,36,0:69 chr2 71755380 . A G 208 . DP=40;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,7;MQ=60;FQ=-135 GT:PL:GQ 1/1:241,108,0:99 chr2 71762232 . C T 200 . DP=91;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,20,59;MQ=59;FQ=-265 GT:PL:GQ 1/1:233,238,0:99 chr2 71762310 . A G 215 . DP=39;VDB=0.0400;AF1=1;AC1=2;DP4=1,0,14,24;MQ=58;FQ=-115;PV4=0.38,0.041,1,1 GT:PL:GQ 1/1:248,88,0:99 chr2 71762413 . G A 29 . DP=36;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,13,8,5;MQ=59;FQ=32;PV4=0.31,2.9e-16,0.35,1 GT:PL:GQ 0/1:59,0,255:62 chr2 71766487 . G A 167 . DP=9;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:200,27,0:51 chr2 71776345 . C T 45.3 . DP=21;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:78,15,0:27 chr2 71776346 . A G 47.3 . DP=21;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:80,15,0:27 chr2 71780215 . T C 225 . DP=111;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,26,23,31;MQ=60;FQ=225;PV4=0.56,0.27,0.082,1 GT:PL:GQ 0/1:255,0,255:99 chr2 71795152 . A T 225 . DP=111;VDB=0.0400;AF1=0.5;AC1=1;DP4=28,20,35,24;MQ=60;FQ=225;PV4=1,0.23,0.1,0.24 GT:PL:GQ 0/1:255,0,255:99 chr2 71797176 . A C 116 . DP=26;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,7,4,9;MQ=58;FQ=119;PV4=0.69,0.0017,0.085,1 GT:PL:GQ 0/1:146,0,208:99 chr2 71801564 . G A 80 . DP=31;VDB=0.0384;AF1=0.5;AC1=1;DP4=1,12,2,14;MQ=58;FQ=83;PV4=1,3.6e-11,1,0.36 GT:PL:GQ 0/1:110,0,178:99 chr2 71828423 . A T 30 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:62,9,0:16 chr2 71829821 . G T 222 . DP=18;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,15,3;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr2 71838597 . C A 145 . DP=47;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,13,5,18;MQ=59;FQ=148;PV4=0.5,1.6e-11,0.18,1 GT:PL:GQ 0/1:175,0,255:99 chr2 71871039 . A G 157 . DP=28;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,18,9;MQ=60;FQ=-108 GT:PL:GQ 1/1:190,81,0:99 chr2 71871236 . A G 122 . DP=5;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:155,15,0:27 chr2 71891361 . C T 153 . DP=30;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,22,7;MQ=59;FQ=-114 GT:PL:GQ 1/1:186,87,0:99 chr2 71901286 . C T 49 . DP=10;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:82,27,0:51 chr2 71906171 . T C 88 . DP=17;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,16,0;MQ=60;FQ=-75 GT:PL:GQ 1/1:121,48,0:93 chr2 71906278 . A C 99 . DP=50;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,12,12,12;MQ=58;FQ=102;PV4=1,8.5e-16,0.48,1 GT:PL:GQ 0/1:129,0,255:99 chr2 71909822 . C T 148 . DP=36;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,16,0,20;MQ=60;FQ=134;PV4=1,0.44,1,0.34 GT:PL:GQ 0/1:178,0,161:99 chr2 72361865 . C A 81 . DP=19;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,2,9,3;MQ=60;FQ=84;PV4=1,1.3e-10,1,1 GT:PL:GQ 0/1:111,0,159:99 chr2 72361960 . A G 57 . DP=37;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,10,3,8;MQ=60;FQ=60;PV4=0.15,1e-11,1,1 GT:PL:GQ 0/1:87,0,255:90 chr2 72692272 . AAG AAGAG 214 . INDEL;DP=58;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,51,6;MQ=59;FQ=-201 GT:PL:GQ 1/1:255,166,0:99 chr2 72742083 . gacacacacacacacacacacacacac gacacacacacacacacacacacac,gacacacacacacacacacacac 66.5 . INDEL;DP=27;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,16,1;MQ=59;FQ=-67.5 GT:PL:GQ 1/1:255,181,148,234,0,219:63 chr2 73151231 . C T 155 . DP=14;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:188,39,0:75 chr2 73339430 . T G 99 . DP=24;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,4,10,2;MQ=58;FQ=102;PV4=0.37,5.9e-05,1,0.36 GT:PL:GQ 0/1:129,0,188:99 chr2 73339708 . G A 102 . DP=66;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,18,6,21;MQ=60;FQ=105;PV4=0.036,3.1e-17,1,1 GT:PL:GQ 0/1:132,0,255:99 chr2 73435786 . C A 6.98 . DP=7;VDB=0.0053;AF1=0.4999;AC1=1;DP4=0,2,0,5;MQ=60;FQ=9.41;PV4=1,1.6e-08,1,1 GT:PL:GQ 0/1:36,0,51:37 chr2 73441385 . C G 123 . DP=118;VDB=0.0380;AF1=0.5;AC1=1;DP4=38,26,24,24;MQ=60;FQ=126;PV4=0.34,9.2e-25,0.13,1 GT:PL:GQ 0/1:153,0,255:99 chr2 73441513 . C T 68 . DP=45;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,23,0,21;MQ=59;FQ=71;PV4=1,7e-11,0.47,1 GT:PL:GQ 0/1:98,0,166:99 chr2 73447736 . G A 71 . DP=14;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:104,42,0:81 chr2 73447775 . A G 222 . DP=20;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,16,4;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr2 73450139 . A T 222 . DP=69;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,37,29;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr2 73452127 . AGG AG 115 . INDEL;DP=16;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,3,0,10;MQ=60;FQ=67.5;PV4=0.29,1,1,0.13 GT:PL:GQ 0/1:153,0,102:99 chr2 73455747 . C T 192 . DP=100;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,35,58;MQ=60;FQ=-282 GT:PL:GQ 1/1:225,255,0:99 chr2 73460293 . Agggccgggcc Agggcc 100 . INDEL;DP=5;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,0,4;MQ=54;FQ=-46.5 GT:PL:GQ 1/1:140,12,0:21 chr2 73461483 . C A 222 . DP=71;VDB=0.0392;AF1=1;AC1=2;DP4=1,0,26,43;MQ=60;FQ=-208;PV4=0.39,1,1,0.23 GT:PL:GQ 1/1:255,181,0:99 chr2 73467676 . GAAAA GAA 214 . INDEL;DP=74;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,11,59;MQ=58;FQ=-246 GT:PL:GQ 1/1:255,211,0:99 chr2 73471653 . T G 173 . DP=26;VDB=0.0400;AF1=1;AC1=2;DP4=1,0,19,6;MQ=58;FQ=-76;PV4=1,0.00023,1,0.19 GT:PL:GQ 1/1:206,49,0:95 chr2 73477351 . T C 204 . DP=27;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,20,7;MQ=60;FQ=-108 GT:PL:GQ 1/1:237,81,0:99 chr2 73478461 . A T 202 . DP=46;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,8,34;MQ=59;FQ=-153 GT:PL:GQ 1/1:235,126,0:99 chr2 73490412 . A G 222 . DP=35;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,23;MQ=59;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr2 73491514 . C T 225 . DP=79;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,20,11,29;MQ=59;FQ=225;PV4=0.32,0.034,1,0.44 GT:PL:GQ 0/1:255,0,255:99 chr2 73613031 . Tggaggaggaggaggaggaggaggaggaggaggaggagga Tggaggaggaggaggaggaggaggaggaggaggagga 12.7 . INDEL;DP=4;VDB=0.0095;AF1=0.5;AC1=1;DP4=1,1,2,0;MQ=47;FQ=15.6;PV4=1,1,1,1 GT:PL:GQ 0/1:50,0,77:53 chr2 73650122 . T A 206 . DP=102;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,8,92;MQ=60;FQ=-282 GT:PL:GQ 1/1:239,255,0:99 chr2 73675227 . TCTC TCTCCTC 214 . INDEL;DP=85;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,49,28;MQ=54;FQ=-267 GT:PL:GQ 1/1:255,232,0:99 chr2 73675669 . T G,C 220 . DP=61;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,41,18;MQ=60;FQ=-202 GT:PL:GQ 1/1:253,175,0,248,152,245:99 chr2 73675844 . C T 194 . DP=78;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,46,26;MQ=60;FQ=-244 GT:PL:GQ 1/1:227,217,0:99 chr2 73828310 . T C 122 . DP=13;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,11,2;MQ=60;FQ=-66 GT:PL:GQ 1/1:155,39,0:75 chr2 73828538 . G A 167 . DP=59;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,41;MQ=60;FQ=-196 GT:PL:GQ 1/1:200,169,0:99 chr2 73898118 . C T 112 . DP=13;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,9,2;MQ=58;FQ=-60 GT:PL:GQ 1/1:145,33,0:63 chr2 73898359 . G A 43.3 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,5;MQ=57;FQ=-42 GT:PL:GQ 1/1:76,15,0:27 chr2 73899613 . T G 83 . DP=14;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,14;MQ=55;FQ=-69 GT:PL:GQ 1/1:116,42,0:81 chr2 73899955 . G T 145 . DP=31;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,26,4;MQ=60;FQ=-117 GT:PL:GQ 1/1:178,90,0:99 chr2 73900065 . T G 180 . DP=79;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,18,23,18;MQ=60;FQ=183;PV4=0.82,2.4e-13,1,1 GT:PL:GQ 0/1:210,0,255:99 chr2 73927931 . A G 222 . DP=91;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,63,26;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 73928098 . C G 222 . DP=170;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,62,97;MQ=60;FQ=-282;PV4=0.39,0.0041,0.46,1 GT:PL:GQ 1/1:255,255,0:99 chr2 73928366 . G C 118 . DP=48;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,11,16;MQ=60;FQ=-108 GT:PL:GQ 1/1:151,81,0:99 chr2 73957124 . A G 221 . DP=37;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,17,20;MQ=59;FQ=-138 GT:PL:GQ 1/1:254,111,0:99 chr2 73957227 . T A 71.1 . DP=7;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:104,21,0:39 chr2 73994074 . G A 74 . DP=37;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,0,37;MQ=60;FQ=-138 GT:PL:GQ 1/1:107,111,0:99 chr2 74007136 . T C 222 . DP=48;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,17,29;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr2 74007345 . A G 56.5 . DP=4;VDB=0.0161;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:89,12,0:21 chr2 74128361 . T G 134 . DP=51;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,43,6;MQ=60;FQ=-175 GT:PL:GQ 1/1:167,148,0:99 chr2 74128369 . G A 216 . DP=63;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,53,8;MQ=59;FQ=-211 GT:PL:GQ 1/1:249,184,0:99 chr2 74128391 . G C 167 . DP=67;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,52,13;MQ=59;FQ=-223 GT:PL:GQ 1/1:200,196,0:99 chr2 74128433 . C T 222 . DP=95;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,55,32;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 74129664 . A G 222 . DP=256;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,123,123;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 74129712 . C G 222 . DP=249;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,108,131;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 74129895 . G A 208 . DP=51;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,9,41;MQ=60;FQ=-178 GT:PL:GQ 1/1:241,151,0:99 chr2 74135380 . G A 175 . DP=34;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,27,6;MQ=60;FQ=-126 GT:PL:GQ 1/1:208,99,0:99 chr2 74135797 . T C 88.1 . DP=7;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-45 GT:PL:GQ 1/1:121,18,0:33 chr2 74135898 . A G 191 . DP=70;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,38,30;MQ=60;FQ=-232 GT:PL:GQ 1/1:224,205,0:99 chr2 74140581 . A T 41 . DP=10;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:74,24,0:45 chr2 74140789 . T C 132 . DP=84;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,26,52;MQ=59;FQ=-262 GT:PL:GQ 1/1:165,235,0:99 chr2 74140888 . A C 181 . DP=23;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,22;MQ=60;FQ=-93 GT:PL:GQ 1/1:214,66,0:99 chr2 74153905 . C T 42.5 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:75,12,0:21 chr2 74185876 . A T 187 . DP=102;VDB=0.0322;AF1=0.5;AC1=1;DP4=27,21,24,28;MQ=60;FQ=190;PV4=0.33,4.1e-32,0.17,1 GT:PL:GQ 0/1:217,0,255:99 chr2 74273383 . TCCCCC TCCCCCC 146 . INDEL;DP=35;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,12;MQ=60;FQ=-137 GT:PL:GQ 1/1:187,102,0:99 chr2 74300717 . T C 173 . DP=30;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,19,11;MQ=59;FQ=-117 GT:PL:GQ 1/1:206,90,0:99 chr2 74320262 . C G 209 . DP=16;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,15;MQ=60;FQ=-75 GT:PL:GQ 1/1:242,48,0:93 chr2 74327453 . C T 88 . DP=12;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,9,2;MQ=60;FQ=-60 GT:PL:GQ 1/1:121,33,0:63 chr2 74383911 . G A 4.61 . DP=2;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:34,6,0:5 chr2 74441416 . A C 112 . DP=42;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,16,4,18;MQ=60;FQ=115;PV4=0.67,1.6e-18,1,1 GT:PL:GQ 0/1:142,0,227:99 chr2 74448655 . T C 225 . DP=55;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,15,8,22;MQ=59;FQ=225;PV4=0.56,0.22,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 74466594 . G A 225 . DP=40;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,11,8,12;MQ=57;FQ=221;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,249:99 chr2 74588829 . G A 15.1 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,14,0,9;MQ=59;FQ=18.1;PV4=1,1.9e-13,1,1 GT:PL:GQ 0/1:45,0,208:48 chr2 74643215 . C T 94 . DP=54;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,18,7,13;MQ=59;FQ=97;PV4=0.57,1.1e-15,0.37,1 GT:PL:GQ 0/1:124,0,255:99 chr2 74725144 . T C 153 . DP=29;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,15,12;MQ=60;FQ=-108 GT:PL:GQ 1/1:186,81,0:99 chr2 74756548 . G C 208 . DP=37;VDB=0.0373;AF1=0.5;AC1=1;DP4=10,9,4,12;MQ=60;FQ=211;PV4=0.17,0.42,1,1 GT:PL:GQ 0/1:238,0,255:99 chr2 74884611 . A G 99 . DP=36;VDB=0.0322;AF1=0.5;AC1=1;DP4=20,1,10,4;MQ=60;FQ=102;PV4=0.13,5.7e-14,1,1 GT:PL:GQ 0/1:129,0,206:99 chr2 75061873 . C G 93 . DP=35;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,2,29;MQ=59;FQ=-120 GT:PL:GQ 1/1:126,93,0:99 chr2 75104569 . C T 61 . DP=11;VDB=0.0041;AF1=0.5;AC1=1;DP4=0,7,0,4;MQ=60;FQ=64;PV4=1,1,1,1 GT:PL:GQ 0/1:91,0,131:94 chr2 75105798 . A G 222 . DP=50;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,24,25;MQ=59;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr2 75113572 . G A 182 . DP=71;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,38;MQ=60;FQ=-229 GT:PL:GQ 1/1:215,202,0:99 chr2 75113657 . C T 225 . DP=59;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,18,10,19;MQ=59;FQ=225;PV4=1,0.32,0.078,1 GT:PL:GQ 0/1:255,0,255:99 chr2 75113789 . C G 118 . DP=67;VDB=0.0399;AF1=1;AC1=2;DP4=1,0,22,20;MQ=59;FQ=-121;PV4=1,1.4e-06,0.41,0.16 GT:PL:GQ 1/1:151,94,0:99 chr2 75113903 . A G 19.1 . DP=30;VDB=0.0066;AF1=0.5;AC1=1;DP4=4,13,0,12;MQ=59;FQ=22;PV4=0.12,1.3e-11,0.12,1 GT:PL:GQ 0/1:49,0,255:52 chr2 75115108 . A G 222 . DP=29;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,20,8;MQ=60;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr2 75116627 . C T 138 . DP=45;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,6,37;MQ=59;FQ=-156 GT:PL:GQ 1/1:171,129,0:99 chr2 75186337 . A G 222 . DP=34;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,21,11;MQ=60;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr2 75187573 . G A 222 . DP=30;VDB=0.0400;AF1=1;AC1=2;DP4=1,0,21,7;MQ=60;FQ=-77;PV4=1,0.33,1,0.21 GT:PL:GQ 1/1:255,50,0:97 chr2 75187793 . A T 40.5 . DP=5;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:73,12,0:21 chr2 75425623 . G A 10.4 . DP=3;VDB=0.0186;AF1=0.5002;AC1=1;DP4=1,0,2,0;MQ=60;FQ=4.5;PV4=1,0.31,1,0.26 GT:PL:GQ 0/1:40,0,30:33 chr2 75744918 . T C 66 . DP=69;VDB=0.0322;AF1=0.5;AC1=1;DP4=30,11,19,6;MQ=60;FQ=69;PV4=1,3.6e-30,1,1 GT:PL:GQ 0/1:96,0,255:99 chr2 75745081 . T C 225 . DP=59;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,20,9,21;MQ=60;FQ=225;PV4=0.76,0.46,1,0.063 GT:PL:GQ 0/1:255,0,255:99 chr2 75873733 . T C 27 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:59,9,0:16 chr2 75874390 . G C 46 . DP=12;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,4,2,3;MQ=60;FQ=49;PV4=1,2.5e-05,1,1 GT:PL:GQ 0/1:76,0,147:79 chr2 75881828 . T C 76 . DP=49;VDB=0.0164;AF1=0.5;AC1=1;DP4=21,2,24,1;MQ=60;FQ=79;PV4=0.6,3e-27,1,0.11 GT:PL:GQ 0/1:106,0,240:99 chr2 75915035 . C T 118 . DP=57;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,21,9,11;MQ=59;FQ=121;PV4=0.78,2.3e-14,0.031,0.24 GT:PL:GQ 0/1:148,0,255:99 chr2 75919272 . Aatatatatatatatatatatatata Aatatatatatatatatatata 14.4 . INDEL;DP=6;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,0,2;MQ=29;FQ=-40.5 GT:PL:GQ 1/1:53,6,0:10 chr2 75923413 . T C 60 . DP=13;VDB=0.0343;AF1=0.5;AC1=1;DP4=2,4,4,3;MQ=60;FQ=63;PV4=0.59,5.6e-06,1,0.34 GT:PL:GQ 0/1:90,0,153:93 chr2 75928300 . G T 35 . DP=23;VDB=0.0011;AF1=0.5;AC1=1;DP4=11,4,8,0;MQ=60;FQ=38;PV4=0.26,5.5e-11,1,0.12 GT:PL:GQ 0/1:65,0,255:68 chr2 79254261 . T C 141 . DP=60;VDB=0.0033;AF1=0.5;AC1=1;DP4=3,20,6,27;MQ=60;FQ=144;PV4=0.72,6.1e-15,1,1 GT:PL:GQ 0/1:171,0,241:99 chr2 79255325 . G C 211 . DP=42;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,7,8,7;MQ=60;FQ=214;PV4=0.31,0.13,1,1 GT:PL:GQ 0/1:241,0,255:99 chr2 79255426 . G C 189 . DP=29;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,15,4,7;MQ=59;FQ=192;PV4=0.37,0.48,1,1 GT:PL:GQ 0/1:219,0,255:99 chr2 79312414 . G A 222 . DP=75;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,32,40;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr2 79313815 . G T 92 . DP=25;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,7,6;MQ=60;FQ=-66 GT:PL:GQ 1/1:125,39,0:75 chr2 79314081 . T C 62 . DP=16;VDB=0.0398;AF1=0.5;AC1=1;DP4=1,4,0,10;MQ=60;FQ=65;PV4=0.33,2.5e-08,1,0.056 GT:PL:GQ 0/1:92,0,115:95 chr2 79314094 . G T 181 . DP=12;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:214,33,0:63 chr2 79350186 . G A 61 . DP=32;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,7,6,8;MQ=60;FQ=64;PV4=0.48,1.7e-18,1,1 GT:PL:GQ 0/1:91,0,255:94 chr2 79350347 . A G 222 . DP=61;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,33,23;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr2 79350505 . C T 28 . DP=27;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,11,1,10;MQ=59;FQ=31;PV4=0.6,2.6e-11,0.13,1 GT:PL:GQ 0/1:58,0,226:61 chr2 79386560 . G A 100 . DP=72;VDB=0.0400;AF1=0.5;AC1=1;DP4=19,20,12,17;MQ=59;FQ=103;PV4=0.63,1e-26,1,1 GT:PL:GQ 0/1:130,0,255:99 chr2 79422965 . C G 163 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,3,8,3;MQ=55;FQ=166;PV4=1,1,0.036,1 GT:PL:GQ 0/1:193,0,204:99 chr2 79423062 . ttttgtttgtttgttt ttttgtttgttt 166 . INDEL;DP=19;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,6,1,5;MQ=57;FQ=169;PV4=0.6,0.087,0.035,1 GT:PL:GQ 0/1:204,0,255:99 chr2 79750282 . A G 61 . DP=17;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,0,7,1;MQ=59;FQ=64;PV4=1,0.00045,0.17,0.35 GT:PL:GQ 0/1:91,0,139:94 chr2 80772972 . G A 82 . DP=19;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,3,9,2;MQ=60;FQ=85;PV4=0.6,2.1e-09,1,1 GT:PL:GQ 0/1:112,0,177:99 chr2 80801346 . T C 61 . DP=20;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,3,10,2;MQ=60;FQ=64;PV4=0.3,5.2e-07,1,0.19 GT:PL:GQ 0/1:91,0,157:94 chr2 80831481 . G A 37.8 . DP=2;VDB=0.0182;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:69,6,0:10 chr2 84518438 . T C 213 . DP=29;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,10,18;MQ=60;FQ=-111 GT:PL:GQ 1/1:246,84,0:99 chr2 84650707 . A G 184 . DP=20;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,20,0;MQ=60;FQ=-87 GT:PL:GQ 1/1:217,60,0:99 chr2 84676163 . C A 120 . DP=20;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,2,16;MQ=60;FQ=-81 GT:PL:GQ 1/1:153,54,0:99 chr2 84755996 . ATTTTTTTTTTT ATTTTTTTTTTTT 11.8 . INDEL;DP=31;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,23,7;MQ=60;FQ=-125 GT:PL:GQ 1/1:52,90,0:75 chr2 84756049 . G A 222 . DP=58;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,42,13;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr2 84756341 . T G 19 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:51,9,0:15 chr2 84771480 . G A 222 . DP=52;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,29,22;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr2 84771567 . C T 158 . DP=37;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,33;MQ=60;FQ=-135 GT:PL:GQ 1/1:191,108,0:99 chr2 84800605 . C A 208 . DP=41;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,17;MQ=60;FQ=-144 GT:PL:GQ 1/1:241,117,0:99 chr2 84806553 . G A 90.5 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:123,12,0:21 chr2 84822715 . C T 49.1 . DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:82,21,0:39 chr2 84834063 . T C 222 . DP=133;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,100,29;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 84834237 . T C 121 . DP=75;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,3,68;MQ=59;FQ=-241 GT:PL:GQ 1/1:154,214,0:99 chr2 84880445 . G C 75 . DP=35;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,5,10,2;MQ=60;FQ=78;PV4=1,1.1e-10,1,1 GT:PL:GQ 0/1:105,0,255:99 chr2 84897517 . A G 120 . DP=21;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,5;MQ=59;FQ=-84 GT:PL:GQ 1/1:153,57,0:99 chr2 84899638 . G A 218 . DP=38;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,15,3,16;MQ=59;FQ=220;PV4=1,0.12,1,0.28 GT:PL:GQ 0/1:248,0,255:99 chr2 84915469 . A T 74 . DP=7;VDB=0.0095;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=54;PV4=1,0.42,1,1 GT:PL:GQ 0/1:104,0,81:84 chr2 84924823 . T C 225 . DP=92;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,20,24,22;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 84940477 . T C 88 . DP=12;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,6,0,5;MQ=60;FQ=90.8;PV4=1,1,1,1 GT:PL:GQ 0/1:118,0,130:99 chr2 85023554 . A G 143 . DP=64;VDB=0.0345;AF1=0.5;AC1=1;DP4=28,7,19,9;MQ=60;FQ=146;PV4=0.38,5.6e-25,1,1 GT:PL:GQ 0/1:173,0,255:99 chr2 85023653 . G C 113 . DP=76;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,29,9,23;MQ=60;FQ=116;PV4=0.8,1.2e-25,1,1 GT:PL:GQ 0/1:143,0,255:99 chr2 85024731 . C T 156 . DP=151;VDB=0.0322;AF1=0.5;AC1=1;DP4=30,49,27,43;MQ=59;FQ=159;PV4=1,2.4e-49,1,1 GT:PL:GQ 0/1:186,0,255:99 chr2 85040393 . G C 16.1 . DP=7;VDB=0.0143;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=57;FQ=19.1;PV4=1,0.0022,0.22,0.28 GT:PL:GQ 0/1:46,0,74:49 chr2 85040405 . A G 46 . DP=6;VDB=0.0116;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=56;FQ=36.8;PV4=1,1,0.19,1 GT:PL:GQ 0/1:76,0,64:67 chr2 85040418 . A G 3.01 . DP=4;VDB=0.0182;AF1=0.4998;AC1=1;DP4=0,2,0,2;MQ=60;FQ=4.76;PV4=1,0.071,1,1 GT:PL:GQ 0/1:30,0,54:28 chr2 85051122 . G A 83 . DP=16;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,3,4,3;MQ=60;FQ=86;PV4=1,0.065,1,1 GT:PL:GQ 0/1:113,0,180:99 chr2 85066245 . G A 20 . DP=14;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,2,5,1;MQ=58;FQ=23;PV4=1,5.4e-10,0.13,1 GT:PL:GQ 0/1:50,0,188:53 chr2 85361101 . T G 136 . DP=50;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,23,5,18;MQ=60;FQ=139;PV4=0.45,4.2e-08,0.15,1 GT:PL:GQ 0/1:166,0,237:99 chr2 85533227 . G A 20 . DP=6;VDB=0.0165;AF1=0.5;AC1=1;DP4=4,0,2,0;MQ=60;FQ=23;PV4=1,1,1,1 GT:PL:GQ 0/1:50,0,88:53 chr2 85533670 . C T 126 . DP=40;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,15,7,11;MQ=59;FQ=129;PV4=0.49,4.7e-08,1,0.42 GT:PL:GQ 0/1:156,0,255:99 chr2 85549868 . A G 173 . DP=128;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,54,69;MQ=60;FQ=-282 GT:PL:GQ 1/1:206,255,0:99 chr2 85552186 . C A 104 . DP=12;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,3,9;MQ=60;FQ=-63 GT:PL:GQ 1/1:137,36,0:69 chr2 85553784 . C T 161 . DP=73;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,30,41;MQ=60;FQ=-241 GT:PL:GQ 1/1:194,214,0:99 chr2 85554080 . G A 152 . DP=135;VDB=0.0399;AF1=0.5;AC1=1;DP4=47,12,55,20;MQ=60;FQ=155;PV4=0.42,8.4e-48,1,0.023 GT:PL:GQ 0/1:182,0,255:99 chr2 85554885 . G A 20 . DP=8;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=60;FQ=23;PV4=1,0.00025,1,1 GT:PL:GQ 0/1:50,0,67:53 chr2 85570186 . G A 6.2 . DP=7;VDB=0.0002;AF1=0.4999;AC1=1;DP4=3,0,3,0;MQ=60;FQ=8.65;PV4=1,0.00015,1,1 GT:PL:GQ 0/1:35,0,75:36 chr2 85571710 . A G 143 . DP=9;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:176,27,0:51 chr2 85573033 . G A 88 . DP=71;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,23,9,18;MQ=60;FQ=91;PV4=0.45,3.7e-28,1,1 GT:PL:GQ 0/1:118,0,255:99 chr2 85576451 . GTCTC GTC 76.5 . INDEL;DP=5;VDB=0.0001;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=61.4;PV4=1,6e-05,1,1 GT:PL:GQ 0/1:114,0,96:99 chr2 85590286 . C T 225 . DP=38;VDB=0.0359;AF1=0.5;AC1=1;DP4=11,6,10,11;MQ=59;FQ=225;PV4=0.34,0.013,0.19,0.03 GT:PL:GQ 0/1:255,0,255:99 chr2 85622059 . T C 225 . DP=46;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,16,9,13;MQ=59;FQ=225;PV4=0.76,1,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr2 85662650 . A G 7.8 . DP=9;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,3,1,2;MQ=60;FQ=10.4;PV4=1,0.00016,1,1 GT:PL:GQ 0/1:37,0,145:39 chr2 85769246 . G A 162 . DP=14;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:195,42,0:81 chr2 85769711 . C G 158 . DP=50;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,13,12,12;MQ=60;FQ=161;PV4=1,9.5e-21,0.15,1 GT:PL:GQ 0/1:188,0,255:99 chr2 85780107 . G A 113 . DP=70;VDB=0.0322;AF1=0.5;AC1=1;DP4=23,14,20,13;MQ=60;FQ=116;PV4=1,3.8e-23,1,1 GT:PL:GQ 0/1:143,0,255:99 chr2 85781318 . T G 222 . DP=48;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,22;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr2 85788175 . T A 72 . DP=16;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,10,0,5;MQ=60;FQ=75;PV4=1,1,1,1 GT:PL:GQ 0/1:102,0,152:99 chr2 85806068 . T C 6.2 . DP=13;VDB=0.0254;AF1=0.4999;AC1=1;DP4=9,0,4,0;MQ=60;FQ=8.65;PV4=1,8e-07,1,0.17 GT:PL:GQ 0/1:35,0,162:36 chr2 85808737 . A G 61 . DP=87;VDB=0.0322;AF1=0.5;AC1=1;DP4=27,19,23,14;MQ=59;FQ=64;PV4=0.82,2.1e-43,0.057,0.4 GT:PL:GQ 0/1:91,0,255:94 chr2 85808871 . C T 77 . DP=52;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,22,3,25;MQ=60;FQ=80;PV4=1,6.6e-23,0.18,1 GT:PL:GQ 0/1:107,0,233:99 chr2 85818797 . G A 14.2 . DP=6;VDB=0.0041;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=16.8;PV4=1,0.00013,1,0.49 GT:PL:GQ 0/1:44,0,55:46 chr2 85818886 . C T 225 . DP=89;VDB=0.0322;AF1=0.5;AC1=1;DP4=32,12,34,9;MQ=60;FQ=225;PV4=0.62,1,0.16,0.26 GT:PL:GQ 0/1:255,0,255:99 chr2 85824084 . G C 124 . DP=54;VDB=0.0393;AF1=0.5;AC1=1;DP4=15,14,12,13;MQ=60;FQ=127;PV4=1,1.9e-20,1,0.34 GT:PL:GQ 0/1:154,0,255:99 chr2 85826721 . G A 184 . DP=79;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,23,13,26;MQ=60;FQ=187;PV4=0.64,2.5e-13,1,0.31 GT:PL:GQ 0/1:214,0,255:99 chr2 85828014 . T G 55 . DP=8;VDB=0.0099;AF1=0.5;AC1=1;DP4=3,0,4,1;MQ=60;FQ=46.7;PV4=1,0.0019,1,0.14 GT:PL:GQ 0/1:85,0,74:77 chr2 85848733 . C A 225 . DP=45;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,16,6,12;MQ=59;FQ=225;PV4=0.72,0.43,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr2 85874922 . C T 15.1 . DP=15;VDB=0.0099;AF1=0.5;AC1=1;DP4=6,1,7,0;MQ=58;FQ=18.1;PV4=1,2e-07,0.17,0.37 GT:PL:GQ 0/1:45,0,155:48 chr2 85890758 . T C 74 . DP=26;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,7,7,3;MQ=58;FQ=77;PV4=0.68,7.6e-06,0.37,0.08 GT:PL:GQ 0/1:104,0,255:99 chr2 85890771 . T G 168 . DP=28;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,17,11;MQ=58;FQ=-111 GT:PL:GQ 1/1:201,84,0:99 chr2 85893741 . G A 154 . DP=77;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,19,21,10;MQ=59;FQ=157;PV4=0.47,2.7e-22,1,1 GT:PL:GQ 0/1:184,0,255:99 chr2 85894308 . G T 109 . DP=41;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,15,5,12;MQ=59;FQ=112;PV4=1,1.6e-13,0.42,0.34 GT:PL:GQ 0/1:139,0,255:99 chr2 85895338 . T G 51 . DP=15;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,5,2,6;MQ=60;FQ=54;PV4=1,5.1e-07,1,1 GT:PL:GQ 0/1:81,0,141:84 chr2 85921389 . G C 98 . DP=17;VDB=0.0066;AF1=0.5;AC1=1;DP4=7,0,7,3;MQ=59;FQ=94.8;PV4=0.23,2.8e-07,0.21,1 GT:PL:GQ 0/1:128,0,123:99 chr2 85921992 . T C 33.5 . DP=4;VDB=0.0082;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:66,12,0:21 chr2 85924729 . C T 93 . DP=19;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,2,9,3;MQ=59;FQ=96;PV4=1,4.3e-07,0.23,1 GT:PL:GQ 0/1:123,0,154:99 chr2 85924899 . T A 27 . DP=8;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,2,0,5;MQ=60;FQ=30;PV4=0.37,2.3e-05,1,1 GT:PL:GQ 0/1:57,0,87:60 chr2 85925529 . A G 76 . DP=46;VDB=0.0216;AF1=0.5;AC1=1;DP4=19,5,20,1;MQ=59;FQ=79;PV4=0.19,7.8e-13,0.15,0.36 GT:PL:GQ 0/1:106,0,255:99 chr2 85925667 . G A 190 . DP=108;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,24,31,26;MQ=60;FQ=193;PV4=0.85,2.1e-26,1,1 GT:PL:GQ 0/1:220,0,255:99 chr2 85925680 . T G 225 . DP=109;VDB=0.0398;AF1=0.5;AC1=1;DP4=21,26,31,27;MQ=60;FQ=225;PV4=0.43,0.066,0.1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 85925756 . C G 187 . DP=86;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,24,15,33;MQ=59;FQ=190;PV4=0.82,1.8e-18,0.36,0.27 GT:PL:GQ 0/1:217,0,255:99 chr2 85925848 . C G 102 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,11,2,14;MQ=58;FQ=105;PV4=1,9.2e-11,1,1 GT:PL:GQ 0/1:132,0,184:99 chr2 85981761 . T C 218 . DP=38;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,26,7;MQ=60;FQ=-126 GT:PL:GQ 1/1:251,99,0:99 chr2 86075582 . C T 207 . DP=64;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,13,45;MQ=59;FQ=-202 GT:PL:GQ 1/1:240,175,0:99 chr2 86088311 . T C 222 . DP=17;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,14,3;MQ=60;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr2 86094686 . C T 222 . DP=19;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,15,3;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr2 86258784 . T G 56 . DP=22;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,8,3,5;MQ=60;FQ=59;PV4=1,5.6e-09,1,1 GT:PL:GQ 0/1:86,0,247:89 chr2 86259443 . C T 129 . DP=168;VDB=0.0365;AF1=0.5;AC1=1;DP4=46,39,47,31;MQ=59;FQ=132;PV4=0.53,7.3e-45,1,1 GT:PL:GQ 0/1:159,0,255:99 chr2 86275985 . A G 91 . DP=75;VDB=0.0298;AF1=0.5;AC1=1;DP4=35,11,22,6;MQ=60;FQ=94;PV4=1,2.2e-21,1,1 GT:PL:GQ 0/1:121,0,255:99 chr2 86292656 . C T 222 . DP=56;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,11,42;MQ=59;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr2 86305123 . T C 198 . DP=31;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,23,7;MQ=58;FQ=-117 GT:PL:GQ 1/1:231,90,0:99 chr2 86307884 . CAGAG CAG 61.2 . INDEL;DP=2;VDB=0.0169;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:100,6,0:10 chr2 86310110 . C T 41 . DP=8;VDB=0.0164;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=57;FQ=43;PV4=1,0.0037,0.24,1 GT:PL:GQ 0/1:71,0,77:73 chr2 86310144 . T C 105 . DP=20;VDB=0.0118;AF1=0.5;AC1=1;DP4=11,3,5,1;MQ=60;FQ=108;PV4=1,1,1,1 GT:PL:GQ 0/1:135,0,240:99 chr2 86315741 . C T 225 . DP=45;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,6,20,5;MQ=60;FQ=225;PV4=0.49,0.41,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 86317037 . G C 189 . DP=62;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,36,19;MQ=60;FQ=-193 GT:PL:GQ 1/1:222,166,0:99 chr2 86332809 . G A 159 . DP=86;VDB=0.0345;AF1=0.5;AC1=1;DP4=38,5,34,8;MQ=60;FQ=162;PV4=0.38,6.4e-14,0.16,0.18 GT:PL:GQ 0/1:189,0,255:99 chr2 86334199 . G A 37 . DP=81;VDB=0.0322;AF1=0.5;AC1=1;DP4=43,6,28,3;MQ=60;FQ=40;PV4=1,5.6e-37,1,1 GT:PL:GQ 0/1:67,0,255:70 chr2 86344237 . A G 105 . DP=16;VDB=0.0393;AF1=0.5;AC1=1;DP4=5,5,3,3;MQ=60;FQ=108;PV4=1,0.033,1,0.087 GT:PL:GQ 0/1:135,0,239:99 chr2 86344367 . T C 9.31 . DP=2;VDB=0.0135;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr2 86346308 . G A 34.5 . DP=4;VDB=0.0110;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:67,12,0:21 chr2 86352010 . G T 172 . DP=12;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:205,27,0:51 chr2 86352308 . G C 63 . DP=13;VDB=0.0041;AF1=0.5;AC1=1;DP4=3,6,2,2;MQ=60;FQ=66;PV4=1,0.0075,1,0.35 GT:PL:GQ 0/1:93,0,221:96 chr2 86352785 . G A 103 . DP=51;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,17,10,10;MQ=60;FQ=106;PV4=0.57,3.7e-23,1,1 GT:PL:GQ 0/1:133,0,255:99 chr2 86352825 . C T 155 . DP=51;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,13,12,13;MQ=60;FQ=158;PV4=1,9.7e-16,1,0.37 GT:PL:GQ 0/1:185,0,255:99 chr2 86357908 . C T 26 . DP=12;VDB=0.0399;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=58;FQ=29;PV4=1,1.2e-05,0.19,1 GT:PL:GQ 0/1:56,0,106:59 chr2 86359405 . G T 84 . DP=66;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,7,31,4;MQ=60;FQ=87;PV4=0.2,1e-27,1,1 GT:PL:GQ 0/1:114,0,255:99 chr2 86362204 . C T 99 . DP=11;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,3,0,7;MQ=60;FQ=72;PV4=0.36,0.32,1,1 GT:PL:GQ 0/1:129,0,99:99 chr2 86363074 . A G 225 . DP=48;VDB=0.0244;AF1=0.5;AC1=1;DP4=17,12,13,6;MQ=60;FQ=225;PV4=0.55,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 86363855 . G C 36.8 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:68,6,0:10 chr2 86364353 . A G 216 . DP=27;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,10,5,7;MQ=60;FQ=219;PV4=0.71,1,1,1 GT:PL:GQ 0/1:246,0,255:99 chr2 86385728 . C T 16.1 . DP=17;VDB=0.0393;AF1=0.5;AC1=1;DP4=10,0,6,0;MQ=59;FQ=19.1;PV4=1,9.2e-05,1,0.24 GT:PL:GQ 0/1:46,0,155:49 chr2 86385886 . A G 120 . DP=30;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,20;MQ=59;FQ=-108 GT:PL:GQ 1/1:153,81,0:99 chr2 86400824 . G A 38 . DP=11;VDB=0.0249;AF1=0.5;AC1=1;DP4=5,2,3,1;MQ=58;FQ=41;PV4=1,0.0014,0.1,0.16 GT:PL:GQ 0/1:68,0,170:71 chr2 86422416 . T C 49 . DP=31;VDB=0.0393;AF1=0.5;AC1=1;DP4=13,6,3,7;MQ=60;FQ=52;PV4=0.064,5.4e-09,1,1 GT:PL:GQ 0/1:79,0,255:82 chr2 86426566 . G A 225 . DP=155;VDB=0.0365;AF1=0.5;AC1=1;DP4=35,51,38,18;MQ=60;FQ=225;PV4=0.002,0.0047,0.039,0.18 GT:PL:GQ 0/1:255,0,255:99 chr2 86437551 . T G 87 . DP=12;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:120,36,0:69 chr2 86440718 . T C 222 . DP=45;VDB=0.0392;AF1=1;AC1=2;DP4=1,0,21,21;MQ=59;FQ=-127;PV4=1,1,1,0.19 GT:PL:GQ 1/1:255,100,0:99 chr2 86440873 . C T 3.54 . DP=10;VDB=0.0126;AF1=0.4998;AC1=1;DP4=0,6,0,3;MQ=60;FQ=5.47;PV4=1,0.00022,1,1 GT:PL:GQ 0/1:31,0,128:30 chr2 86444068 . A G 114 . DP=23;VDB=0.0164;AF1=0.5;AC1=1;DP4=13,0,8,1;MQ=59;FQ=117;PV4=0.41,0.026,0.12,0.14 GT:PL:GQ 0/1:144,0,171:99 chr2 86444252 . A C 49 . DP=32;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,11,2,10;MQ=60;FQ=52;PV4=0.14,5.3e-13,1,0.3 GT:PL:GQ 0/1:79,0,255:82 chr2 86479035 . A G 33.5 . DP=5;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:66,12,0:21 chr2 86479287 . G T 154 . DP=28;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,5,22;MQ=59;FQ=-108 GT:PL:GQ 1/1:187,81,0:99 chr2 86481835 . C T 165 . DP=18;VDB=0.0053;AF1=0.5;AC1=1;DP4=7,1,7,3;MQ=59;FQ=131;PV4=0.59,0.11,0.19,1 GT:PL:GQ 0/1:195,0,158:99 chr2 86491245 . C T 195 . DP=70;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,27,2,27;MQ=60;FQ=198;PV4=0.053,1,0.13,0.16 GT:PL:GQ 0/1:225,0,255:99 chr2 86507135 . A G 108 . DP=61;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,11,16,8;MQ=60;FQ=111;PV4=1,5.4e-15,0.12,1 GT:PL:GQ 0/1:138,0,255:99 chr2 86507205 . C T 204 . DP=51;VDB=0.0384;AF1=0.5;AC1=1;DP4=9,18,13,9;MQ=59;FQ=207;PV4=0.09,1.8e-05,0.44,0.15 GT:PL:GQ 0/1:234,0,255:99 chr2 86509267 . G A 210 . DP=26;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,4,8,7;MQ=60;FQ=174;PV4=1,0.03,1,1 GT:PL:GQ 0/1:240,0,201:99 chr2 86509388 . T G 222 . DP=23;VDB=0.0322;AF1=1;AC1=2;DP4=0,1,10,12;MQ=58;FQ=-67;PV4=1,1,1,0.3 GT:PL:GQ 1/1:255,40,0:77 chr2 86678124 . A G 22 . DP=11;VDB=0.0006;AF1=0.5;AC1=1;DP4=6,0,5,0;MQ=60;FQ=25;PV4=1,2e-05,1,1 GT:PL:GQ 0/1:52,0,124:55 chr2 86683642 . A G 222 . DP=18;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,12,6;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr2 86683901 . G C 45 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,1,9,2;MQ=60;FQ=48;PV4=0.59,5e-12,1,0.13 GT:PL:GQ 0/1:75,0,199:78 chr2 86691250 . G A 222 . DP=61;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,41,18;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr2 86693826 . T C 133 . DP=168;VDB=0.0399;AF1=0.5;AC1=1;DP4=40,62,31,32;MQ=60;FQ=136;PV4=0.26,8.2e-39,1,0.29 GT:PL:GQ 0/1:163,0,255:99 chr2 86707504 . T C 117 . DP=17;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,3,13;MQ=60;FQ=-75 GT:PL:GQ 1/1:150,48,0:93 chr2 86711086 . A G 62 . DP=32;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,4,9,3;MQ=59;FQ=65;PV4=1,1.9e-13,1,1 GT:PL:GQ 0/1:92,0,255:95 chr2 86712731 . G C 116 . DP=11;VDB=0.0011;AF1=0.5;AC1=1;DP4=3,0,8,0;MQ=60;FQ=44;PV4=1,0.092,1,1 GT:PL:GQ 0/1:146,0,71:74 chr2 86712820 . A T 89 . DP=68;VDB=0.0399;AF1=0.5;AC1=1;DP4=25,12,23,6;MQ=59;FQ=92;PV4=0.4,5.8e-19,0.023,0.37 GT:PL:GQ 0/1:119,0,255:99 chr2 86737649 . G A 40 . DP=81;VDB=0.0345;AF1=0.5;AC1=1;DP4=22,33,8,14;MQ=60;FQ=43;PV4=0.8,2.7e-24,1,1 GT:PL:GQ 0/1:70,0,255:73 chr2 86756381 . T G 120 . DP=73;VDB=0.0398;AF1=0.5;AC1=1;DP4=26,11,26,7;MQ=60;FQ=123;PV4=0.58,1.3e-28,0.15,0.073 GT:PL:GQ 0/1:150,0,255:99 chr2 86790525 . AGG AG 123 . INDEL;DP=15;VDB=0.0014;AF1=0.5;AC1=1;DP4=2,4,1,8;MQ=60;FQ=117;PV4=0.53,0.29,1,0.29 GT:PL:GQ 0/1:161,0,152:99 chr2 86850022 . T C 110 . DP=12;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,9;MQ=60;FQ=-60 GT:PL:GQ 1/1:143,33,0:63 chr2 86947783 . C T 52.3 . DP=5;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,0;MQ=55;FQ=-42 GT:PL:GQ 1/1:85,15,0:27 chr2 86979093 . G A 172 . DP=26;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,11,14;MQ=60;FQ=-102 GT:PL:GQ 1/1:205,75,0:99 chr2 86992337 . TA TAAA 214 . INDEL;DP=37;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,28;MQ=59;FQ=-128 GT:PL:GQ 1/1:255,93,0:99 chr2 87015633 . TGAG TGAGAG 214 . INDEL;DP=46;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,40,4;MQ=59;FQ=-167 GT:PL:GQ 1/1:255,132,0:99 chr2 87042825 . T C 222 . DP=30;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,18;MQ=60;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr2 87048702 . T G 44 . DP=10;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:77,27,0:51 chr2 87069379 . G A 34 . DP=18;VDB=0.0140;AF1=0.5;AC1=1;DP4=7,2,7,1;MQ=20;FQ=37;PV4=1,0.076,0.26,0.17 GT:PL:GQ 0/1:64,0,93:67 chr2 87069431 . C T 45 . DP=29;VDB=0.0033;AF1=0.5;AC1=1;DP4=10,6,11,2;MQ=22;FQ=48;PV4=0.24,5.7e-13,0.12,1 GT:PL:GQ 0/1:75,0,152:78 chr2 87073852 . C T 217 . DP=43;VDB=0.0393;AF1=0.5;AC1=1;DP4=8,17,10,8;MQ=55;FQ=219;PV4=0.21,0.35,0.13,1 GT:PL:GQ 0/1:247,0,255:99 chr2 87073921 . G A 165 . DP=27;VDB=0.0053;AF1=0.5;AC1=1;DP4=5,11,2,9;MQ=55;FQ=168;PV4=0.66,1,1,1 GT:PL:GQ 0/1:195,0,251:99 chr2 87355925 . G A 17.1 . DP=101;VDB=0.0399;AF1=0.5;AC1=1;DP4=38,45,8,10;MQ=44;FQ=20.1;PV4=1,0.012,0.0047,0.12 GT:PL:GQ 0/1:47,0,255:50 chr2 88387557 . A C 164 . DP=107;VDB=0.0380;AF1=0.5;AC1=1;DP4=31,31,32,13;MQ=59;FQ=167;PV4=0.031,1.4e-21,1,0.2 GT:PL:GQ 0/1:194,0,255:99 chr2 88396080 . A C 210 . DP=13;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,10,2;MQ=58;FQ=-63 GT:PL:GQ 1/1:243,36,0:69 chr2 88396120 . G A 168 . DP=21;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,17,4;MQ=59;FQ=-90 GT:PL:GQ 1/1:201,63,0:99 chr2 88396123 . C G 161 . DP=20;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,16,4;MQ=59;FQ=-87 GT:PL:GQ 1/1:194,60,0:99 chr2 88396174 . T C 204 . DP=39;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,25,11;MQ=60;FQ=-135 GT:PL:GQ 1/1:237,108,0:99 chr2 88402511 . C A 11.3 . DP=10;VDB=0.0059;AF1=0.5;AC1=1;DP4=6,0,4,0;MQ=60;FQ=14.2;PV4=1,1.2e-05,1,1 GT:PL:GQ 0/1:41,0,130:43 chr2 88402560 . G A 140 . DP=23;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,2,9,1;MQ=59;FQ=143;PV4=1,0.13,0.15,0.46 GT:PL:GQ 0/1:170,0,215:99 chr2 88406108 . C T 58 . DP=19;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,9,3,5;MQ=60;FQ=61;PV4=0.6,3.8e-06,1,1 GT:PL:GQ 0/1:88,0,198:91 chr2 88407959 . T C 225 . DP=104;VDB=0.0380;AF1=0.5;AC1=1;DP4=31,31,19,22;MQ=60;FQ=225;PV4=0.84,0.19,0.11,1 GT:PL:GQ 0/1:255,0,255:99 chr2 88410102 . C G 72 . DP=16;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:105,45,0:87 chr2 88411605 . A T 82 . DP=102;VDB=0.0298;AF1=0.5;AC1=1;DP4=39,9,43,11;MQ=60;FQ=85;PV4=1,8.9e-49,1,1 GT:PL:GQ 0/1:112,0,255:99 chr2 88411793 . C A 111 . DP=58;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,2,54;MQ=60;FQ=-196 GT:PL:GQ 1/1:144,169,0:99 chr2 88472791 . G A 125 . DP=12;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,9,3;MQ=60;FQ=-63 GT:PL:GQ 1/1:158,36,0:69 chr2 88472925 . A G 31 . DP=8;VDB=0.0305;AF1=0.5;AC1=1;DP4=0,3,2,2;MQ=60;FQ=33.9;PV4=0.43,0.00014,1,1 GT:PL:GQ 0/1:61,0,77:64 chr2 88474370 . A G 119 . DP=21;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,3,15;MQ=60;FQ=-81 GT:PL:GQ 1/1:152,54,0:99 chr2 88485392 . G C 53.5 . DP=4;VDB=0.0095;AF1=1;AC1=2;DP4=0,0,2,2;MQ=60;FQ=-39 GT:PL:GQ 1/1:86,12,0:21 chr2 88748390 . A T 61 . DP=48;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,22,2,14;MQ=60;FQ=64;PV4=0.29,4.7e-20,1,1 GT:PL:GQ 0/1:91,0,255:94 chr2 88825334 . CAAGAAGAAGAAGA CAAGAAGAAGA 5.08 . INDEL;DP=8;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=54;FQ=7.36;PV4=1,0.098,0.21,0.25 GT:PL:GQ 0/1:41,0,83:41 chr2 88826071 . G C 225 . DP=63;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,16,12,19;MQ=59;FQ=225;PV4=0.61,0.0035,1,0.18 GT:PL:GQ 0/1:255,0,255:99 chr2 88870632 . A T 31.1 . DP=7;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:64,18,0:33 chr2 88874891 . C A 222 . DP=120;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,34,78;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 88879131 . T C 114 . DP=47;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,20,3,21;MQ=60;FQ=117;PV4=1,1e-21,1,0.2 GT:PL:GQ 0/1:144,0,255:99 chr2 88882942 . T A 225 . DP=54;VDB=0.0345;AF1=0.5;AC1=1;DP4=22,7,16,9;MQ=60;FQ=225;PV4=0.38,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 88895123 . T C 222 . DP=70;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,24,44;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr2 88895351 . T C 222 . DP=12;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,9,3;MQ=60;FQ=-63 GT:PL:GQ 1/1:255,36,0:69 chr2 88999476 . G A 95 . DP=97;VDB=0.0380;AF1=0.5;AC1=1;DP4=33,15,24,22;MQ=59;FQ=98;PV4=0.14,1.5e-46,1,1 GT:PL:GQ 0/1:125,0,255:99 chr2 89156948 . C G 225 . DP=59;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,17,14,10;MQ=60;FQ=225;PV4=0.59,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 89157282 . T A 19.1 . DP=14;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,8,0,6;MQ=60;FQ=22;PV4=1,5.6e-08,1,1 GT:PL:GQ 0/1:49,0,154:52 chr2 89160889 . G T 157 . DP=97;VDB=0.0345;AF1=0.5;AC1=1;DP4=23,29,17,26;MQ=60;FQ=160;PV4=0.68,4.7e-31,1,1 GT:PL:GQ 0/1:187,0,255:99 chr2 89161322 . C G 155 . DP=165;VDB=0.0345;AF1=0.5;AC1=1;DP4=60,27,54,21;MQ=60;FQ=158;PV4=0.73,7.2e-63,1,1 GT:PL:GQ 0/1:185,0,255:99 chr2 89161547 . A G 36 . DP=20;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,10,0,9;MQ=60;FQ=39;PV4=1,1.2e-06,1,1 GT:PL:GQ 0/1:66,0,128:69 chr2 89185774 . G A 30.8 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:62,6,0:10 chr2 89196757 . G A 225 . DP=67;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,13,24,8;MQ=59;FQ=225;PV4=0.31,0.4,0.47,1 GT:PL:GQ 0/1:255,0,255:99 chr2 89196906 . A C 225 . DP=48;VDB=0.0359;AF1=0.5;AC1=1;DP4=13,12,8,14;MQ=59;FQ=225;PV4=0.38,0.48,0.064,0.3 GT:PL:GQ 0/1:255,0,255:99 chr2 89197190 . C T 129 . DP=69;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,22,9,19;MQ=59;FQ=132;PV4=0.61,3.6e-22,0.42,1 GT:PL:GQ 0/1:159,0,255:99 chr2 89246951 . C T 225 . DP=75;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,11,23,16;MQ=59;FQ=225;PV4=0.63,1,0.096,1 GT:PL:GQ 0/1:255,0,255:99 chr2 89292182 . A G 154 . DP=86;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,24,22,19;MQ=58;FQ=157;PV4=0.52,1.8e-25,0.094,1 GT:PL:GQ 0/1:184,0,255:99 chr2 89292201 . C T 164 . DP=92;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,26,25,19;MQ=58;FQ=167;PV4=0.29,1.4e-27,0.12,1 GT:PL:GQ 0/1:194,0,255:99 chr2 89292401 . T C 32 . DP=15;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,9,0,6;MQ=50;FQ=35;PV4=1,7.5e-06,4e-12,1 GT:PL:GQ 0/1:62,0,148:65 chr2 89309735 . A G 80 . DP=80;VDB=0.0244;AF1=0.5;AC1=1;DP4=22,18,18,21;MQ=52;FQ=83;PV4=0.5,2.6e-37,2e-06,1 GT:PL:GQ 0/1:110,0,255:99 chr2 89309762 . T G 164 . DP=95;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,18,21,23;MQ=53;FQ=167;PV4=0.29,6e-23,3.7e-05,1 GT:PL:GQ 0/1:194,0,255:99 chr2 89512854 . A C 182 . DP=30;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,25,5;MQ=47;FQ=-117 GT:PL:GQ 1/1:215,90,0:99 chr2 89512959 . C T 119 . DP=97;VDB=0.0244;AF1=0.5;AC1=1;DP4=49,19,23,3;MQ=46;FQ=122;PV4=0.11,0.026,0.0022,1 GT:PL:GQ 0/1:149,0,255:99 chr2 89513004 . A G 225 . DP=64;VDB=0.0053;AF1=0.5;AC1=1;DP4=29,8,17,9;MQ=47;FQ=225;PV4=0.27,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 89544163 . G C 112 . DP=11;VDB=0.0053;AF1=0.5;AC1=1;DP4=5,0,5,1;MQ=43;FQ=51;PV4=1,1,1,1 GT:PL:GQ 0/1:142,0,78:81 chr2 89544473 . A G 109 . DP=57;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,24,6,18;MQ=26;FQ=112;PV4=0.52,1,0.044,1 GT:PL:GQ 0/1:139,0,192:99 chr2 89890702 . T C 101 . DP=110;VDB=0.0380;AF1=0.5;AC1=1;DP4=43,47,7,13;MQ=56;FQ=104;PV4=0.33,0.13,0.3,1 GT:PL:GQ 0/1:131,0,255:99 chr2 89890712 . G T 3.01 . DP=113;VDB=0.0398;AF1=0.4997;AC1=1;DP4=37,53,7,15;MQ=57;FQ=4.77;PV4=0.47,5.4e-17,0.33,1 GT:PL:GQ 0/1:30,0,255:28 chr2 89924052 . ACCCCCC ACCCCCCC 74.5 . INDEL;DP=36;VDB=0.0398;AF1=0.5002;AC1=1;DP4=5,5,11,15;MQ=21;FQ=-5.12;PV4=0.72,1,1,0.38 GT:PL:GQ 0/1:112,0,31:34 chr2 89976550 . T C 189 . DP=68;VDB=0.0190;AF1=0.5;AC1=1;DP4=7,38,6,17;MQ=38;FQ=192;PV4=0.34,1,1,0.014 GT:PL:GQ 0/1:219,0,255:99 chr2 89986921 . C T 31 . DP=5;VDB=0.0004;AF1=0.504;AC1=1;DP4=0,1,3,1;MQ=31;FQ=-9.5;PV4=0.4,0.0068,0.04,1 GT:PL:GQ 0/1:61,0,18:21 chr2 89987087 . T A 101 . DP=55;VDB=0.0298;AF1=0.5;AC1=1;DP4=16,26,4,6;MQ=52;FQ=104;PV4=1,1,0.29,1 GT:PL:GQ 0/1:131,0,255:99 chr2 90007647 . T A 70 . DP=17;VDB=0.0014;AF1=0.5;AC1=1;DP4=11,0,5,0;MQ=56;FQ=73;PV4=1,1,1,1 GT:PL:GQ 0/1:100,0,159:99 chr2 90007670 . G A 48 . DP=37;VDB=0.0118;AF1=0.5;AC1=1;DP4=22,2,11,1;MQ=56;FQ=51;PV4=1,1.3e-12,1,0.47 GT:PL:GQ 0/1:78,0,237:81 chr2 90007852 . T C 113 . DP=79;VDB=0.0359;AF1=0.5;AC1=1;DP4=16,41,8,12;MQ=35;FQ=116;PV4=0.4,0.21,0.37,0.068 GT:PL:GQ 0/1:143,0,255:99 chr2 90008103 . G A 225 . DP=83;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,22,18,31;MQ=46;FQ=225;PV4=1,0.16,0.24,1 GT:PL:GQ 0/1:255,0,255:99 chr2 90008208 . T G 165 . DP=25;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,3,21;MQ=52;FQ=-99 GT:PL:GQ 1/1:198,72,0:99 chr2 90024874 . C A 144 . DP=47;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,15,8,12;MQ=52;FQ=147;PV4=1,3.6e-12,0.46,0.38 GT:PL:GQ 0/1:174,0,255:99 chr2 90025275 . G C 225 . DP=90;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,27,25,28;MQ=34;FQ=196;PV4=0.046,0.46,1,0.5 GT:PL:GQ 0/1:255,0,223:99 chr2 90043509 . C T 14.9 . DP=6;VDB=0.0244;AF1=1;AC1=2;DP4=1,0,4,0;MQ=27;FQ=-27;PV4=1,0.43,1,0.3 GT:PL:GQ 0/1:43,0,0:3 chr2 90108416 . G A 222 . DP=17;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,14,2;MQ=56;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr2 90108778 . G T 66 . DP=51;VDB=0.0298;AF1=0.5;AC1=1;DP4=14,1,30,5;MQ=60;FQ=69;PV4=0.65,6.3e-26,1,1 GT:PL:GQ 0/1:96,0,171:99 chr2 90229260 . T C 47 . DP=45;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,15,7,6;MQ=59;FQ=50;PV4=1,4.9e-15,1,1 GT:PL:GQ 0/1:77,0,255:80 chr2 90249092 . A T 4.13 . DP=149;VDB=0.0380;AF1=0.4998;AC1=1;DP4=49,67,13,19;MQ=59;FQ=6.2;PV4=1,1.3e-31,1,1 GT:PL:GQ 0/1:32,0,255:31 chr2 90249299 . C T 31 . DP=109;VDB=0.0140;AF1=0.5;AC1=1;DP4=43,47,13,6;MQ=57;FQ=34;PV4=0.13,0.058,1.9e-19,0.21 GT:PL:GQ 0/1:61,0,255:64 chr2 90249415 . A G 62 . DP=101;VDB=0.0380;AF1=0.5;AC1=1;DP4=29,41,10,19;MQ=56;FQ=65;PV4=0.65,1.2e-28,3.4e-09,1 GT:PL:GQ 0/1:92,0,255:95 chr2 90249468 . C T 3.54 . DP=41;VDB=0.0164;AF1=0.4998;AC1=1;DP4=7,23,1,9;MQ=56;FQ=5.47;PV4=0.65,7.6e-19,0.0048,0.095 GT:PL:GQ 0/1:31,0,255:30 chr2 90259848 . T G 102 . DP=26;VDB=0.0014;AF1=0.5;AC1=1;DP4=11,2,9,3;MQ=59;FQ=105;PV4=0.64,9.4e-08,1,1 GT:PL:GQ 0/1:132,0,210:99 chr2 91767199 . A C 6.98 . DP=12;VDB=0.0011;AF1=0.4999;AC1=1;DP4=8,0,4,0;MQ=60;FQ=9.53;PV4=1,3.6e-05,1,0.37 GT:PL:GQ 0/1:36,0,143:37 chr2 91809227 . A G 72 . DP=38;VDB=0.0011;AF1=0.5;AC1=1;DP4=22,2,13,0;MQ=53;FQ=75;PV4=0.53,0.38,1.2e-09,0.35 GT:PL:GQ 0/1:102,0,243:99 chr2 91809324 . C T 209 . DP=278;VDB=0.0298;AF1=0.5;AC1=1;DP4=111,65,46,52;MQ=52;FQ=212;PV4=0.011,1,3.7e-64,1 GT:PL:GQ 0/1:239,0,255:99 chr2 91809404 . G C 41 . DP=230;VDB=0.0190;AF1=0.5;AC1=1;DP4=52,104,23,48;MQ=53;FQ=44;PV4=1,3.7e-38,2.2e-43,1 GT:PL:GQ 0/1:71,0,255:74 chr2 91925158 . G A 150 . DP=41;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,21,5,10;MQ=29;FQ=151;PV4=0.26,1,1,1 GT:PL:GQ 0/1:180,0,182:99 chr2 91937755 . G T 170 . DP=18;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,5,5,4;MQ=55;FQ=162;PV4=0.64,0.12,1,1 GT:PL:GQ 0/1:200,0,189:99 chr2 91955303 . G A 129 . DP=19;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,8,6,4;MQ=37;FQ=63;PV4=0.057,1,1,1 GT:PL:GQ 0/1:159,0,90:93 chr2 95537622 . A G 148 . DP=25;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,4,12,5;MQ=59;FQ=134;PV4=0.39,0.0002,0.25,0.098 GT:PL:GQ 0/1:178,0,161:99 chr2 95815879 . G A 225 . DP=97;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,37,12,35;MQ=60;FQ=225;PV4=0.81,0.057,0.16,0.2 GT:PL:GQ 0/1:255,0,255:99 chr2 95818809 . C A 19.1 . DP=4;VDB=0.0040;AF1=0.5004;AC1=1;DP4=1,0,2,1;MQ=60;FQ=3.53;PV4=1,0.016,1,0.12 GT:PL:GQ 0/1:49,0,28:31 chr2 95830737 . caaaaa cAaaaaa 65.5 . INDEL;DP=30;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,8,9,5;MQ=60;FQ=68.4;PV4=0.48,1,1,0.17 GT:PL:GQ 0/1:103,0,120:99 chr2 95847040 . TGCGGCGGCG TGCGGCG 214 . INDEL;DP=61;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,29,26;MQ=51;FQ=-201 GT:PL:GQ 1/1:255,166,0:99 chr2 95944902 . ACC ACCC 62 . INDEL;DP=4;VDB=0.0082;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:102,12,0:21 chr2 95945568 . G A 79 . DP=25;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,7,6,4;MQ=60;FQ=82;PV4=1,4.5e-05,1,0.37 GT:PL:GQ 0/1:109,0,243:99 chr2 95945830 . G T 23 . DP=4;VDB=0.0098;AF1=0.5004;AC1=1;DP4=1,0,1,2;MQ=60;FQ=3.54;PV4=1,0.026,1,1 GT:PL:GQ 0/1:53,0,28:31 chr2 95947085 . A G 151 . DP=55;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,22,7,19;MQ=59;FQ=154;PV4=0.5,4e-15,0.038,1 GT:PL:GQ 0/1:181,0,255:99 chr2 95947099 . G A 90 . DP=42;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,18,2,16;MQ=59;FQ=93;PV4=0.44,7.7e-14,1,1 GT:PL:GQ 0/1:120,0,255:99 chr2 95952177 . C G 33.5 . DP=4;VDB=0.0276;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:66,12,0:21 chr2 95952641 . A G 104 . DP=49;VDB=0.0373;AF1=0.5;AC1=1;DP4=5,17,8,13;MQ=60;FQ=107;PV4=0.33,3.8e-19,1,0.091 GT:PL:GQ 0/1:134,0,255:99 chr2 95963242 . C G 27 . DP=17;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,1,3,2;MQ=60;FQ=30;PV4=0.55,0.0045,1,1 GT:PL:GQ 0/1:57,0,102:60 chr2 96012907 . C G 31 . DP=19;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,9,0,8;MQ=60;FQ=34;PV4=0.49,1e-06,1,1 GT:PL:GQ 0/1:61,0,203:64 chr2 96048859 . Gcccacccgcccatccacccacccgcccatccacccaccc Gcccacccgcccatccacccaccc 23.5 . INDEL;DP=4;VDB=0.0022;AF1=0.5;AC1=1;DP4=1,0,3,0;MQ=39;FQ=13.5;PV4=1,1,0,1 GT:PL:GQ 0/1:61,0,48:51 chr2 96076409 . C T 54 . DP=8;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,8;MQ=58;FQ=-51 GT:PL:GQ 1/1:87,24,0:45 chr2 96504594 . C T 139 . DP=74;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,22,15,28;MQ=58;FQ=142;PV4=0.61,4e-27,0.35,0.33 GT:PL:GQ 0/1:169,0,255:99 chr2 96514492 . C T 19.8 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,2,0;MQ=57;FQ=-33 GT:PL:GQ 1/1:51,6,0:10 chr2 96555522 . C A 72 . DP=50;VDB=0.0140;AF1=0.5;AC1=1;DP4=28,3,17,2;MQ=49;FQ=75;PV4=1,3.7e-14,1.6e-26,0.18 GT:PL:GQ 0/1:102,0,255:99 chr2 96601240 . G A 12.3 . DP=44;VDB=0.0140;AF1=0.5;AC1=1;DP4=14,23,3,3;MQ=28;FQ=15.1;PV4=0.67,1,1,1 GT:PL:GQ 0/1:42,0,223:44 chr2 96601364 . C T 4.77 . DP=31;VDB=0.0244;AF1=0.4999;AC1=1;DP4=17,7,2,5;MQ=28;FQ=6.99;PV4=0.078,4.9e-06,1,1 GT:PL:GQ 0/1:33,0,202:33 chr2 96604516 . C T 189 . DP=108;VDB=0.0164;AF1=0.5;AC1=1;DP4=24,2,77,4;MQ=47;FQ=147;PV4=0.63,0.0042,7.1e-11,1 GT:PL:GQ 0/1:219,0,174:99 chr2 96604591 . A G 136 . DP=250;VDB=0.0365;AF1=0.5;AC1=1;DP4=42,34,92,78;MQ=47;FQ=139;PV4=0.89,8.4e-88,4.8e-24,0.26 GT:PL:GQ 0/1:166,0,255:99 chr2 96604632 . A T 225 . DP=209;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,48,25,112;MQ=46;FQ=225;PV4=0.11,1,7.7e-30,1 GT:PL:GQ 0/1:255,0,255:99 chr2 96604679 . C T 127 . DP=91;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,26,1,58;MQ=40;FQ=113;PV4=1,0.027,7.3e-34,1 GT:PL:GQ 0/1:157,0,140:99 chr2 96604730 . T C 3.01 . DP=5;VDB=0.0190;AF1=0.4997;AC1=1;DP4=0,3,0,2;MQ=45;FQ=4.77;PV4=1,0.1,0.056,1 GT:PL:GQ 0/1:30,0,65:28 chr2 96606944 . C T 43 . DP=10;VDB=0.0325;AF1=0.5;AC1=1;DP4=0,3,4,3;MQ=40;FQ=36.5;PV4=0.2,6.5e-05,0.034,1 GT:PL:GQ 0/1:73,0,64:66 chr2 96606985 . T C 13.2 . DP=4;VDB=0.0225;AF1=0.501;AC1=1;DP4=0,1,0,3;MQ=44;FQ=-4.79;PV4=1,0.0043,0.11,1 GT:PL:GQ 0/1:43,0,24:27 chr2 96607003 . G A 12.3 . DP=4;VDB=0.0225;AF1=0.5004;AC1=1;DP4=0,1,0,3;MQ=44;FQ=3.45;PV4=1,0.00064,0.11,1 GT:PL:GQ 0/1:42,0,28:31 chr2 96610329 . G C 39 . DP=41;VDB=0.0140;AF1=0.5;AC1=1;DP4=23,4,13,1;MQ=48;FQ=42;PV4=0.64,8.4e-20,4.9e-08,1 GT:PL:GQ 0/1:69,0,255:72 chr2 96610420 . G T 4.13 . DP=76;VDB=0.0298;AF1=0.4998;AC1=1;DP4=20,36,6,13;MQ=53;FQ=6.2;PV4=0.79,9.9e-37,1.6e-12,1 GT:PL:GQ 0/1:32,0,255:31 chr2 96610479 . A G 30 . DP=34;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,23,0,8;MQ=53;FQ=33;PV4=1,1,2.2e-18,0.16 GT:PL:GQ 0/1:60,0,243:63 chr2 96610768 . T G 25 . DP=5;VDB=0.0014;AF1=0.501;AC1=1;DP4=1,0,4,0;MQ=36;FQ=-4.76;PV4=1,0.0015,0.0074,0.41 GT:PL:GQ 0/1:55,0,24:27 chr2 96610805 . aagaaaga aa 74.5 . INDEL;DP=53;VDB=0.0042;AF1=0.5;AC1=1;DP4=19,2,15,0;MQ=48;FQ=77.5;PV4=0.5,1.9e-05,8.2e-16,1 GT:PL:GQ 0/1:112,0,255:99 chr2 96610836 . T C 193 . DP=140;VDB=0.0081;AF1=0.5;AC1=1;DP4=36,7,85,6;MQ=48;FQ=196;PV4=0.12,0.036,4e-11,0.068 GT:PL:GQ 0/1:223,0,254:99 chr2 96610899 . T C 52 . DP=254;VDB=0.0380;AF1=0.5;AC1=1;DP4=32,31,113,69;MQ=49;FQ=55;PV4=0.14,1.3e-90,7.2e-08,1 GT:PL:GQ 0/1:82,0,205:85 chr2 96610921 . T G 80 . DP=218;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,32,66,88;MQ=49;FQ=83;PV4=0.52,5.6e-72,3.8e-06,0.35 GT:PL:GQ 0/1:110,0,215:99 chr2 96610952 . T C 225 . DP=170;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,29,23,105;MQ=49;FQ=169;PV4=0.26,1,0.00022,1 GT:PL:GQ 0/1:255,0,196:99 chr2 96610958 . G T 17.1 . DP=151;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,93,5,34;MQ=49;FQ=20.1;PV4=0.8,1e-44,0.095,1 GT:PL:GQ 0/1:47,0,255:50 chr2 96611018 . G A 52.5 . DP=27;VDB=0.0001;AF1=1;AC1=2;DP4=0,2,0,25;MQ=49;FQ=-39;PV4=1,2.4e-08,0.43,0.14 GT:PL:GQ 1/1:85,12,0:21 chr2 96616348 . C G 9.52 . DP=16;VDB=0.0033;AF1=0.5;AC1=1;DP4=12,0,4,0;MQ=48;FQ=12.3;PV4=1,0.47,0.00038,0.48 GT:PL:GQ 0/1:39,0,171:41 chr2 96616378 . C T 87 . DP=47;VDB=0.0042;AF1=0.5;AC1=1;DP4=21,2,20,2;MQ=40;FQ=90;PV4=1,0.034,4.5e-13,0.04 GT:PL:GQ 0/1:117,0,245:99 chr2 96616442 . C A 144 . DP=75;VDB=0.0081;AF1=0.5;AC1=1;DP4=22,17,28,7;MQ=41;FQ=147;PV4=0.046,0.047,1.8e-19,1 GT:PL:GQ 0/1:174,0,255:99 chr2 96616448 . G T 143 . DP=74;VDB=0.0066;AF1=0.5;AC1=1;DP4=21,18,28,7;MQ=42;FQ=146;PV4=0.026,0.036,4.8e-20,1 GT:PL:GQ 0/1:173,0,255:99 chr2 96616485 . C G 103 . DP=67;VDB=0.0359;AF1=0.5;AC1=1;DP4=11,29,6,19;MQ=39;FQ=106;PV4=1,1,7.9e-11,1 GT:PL:GQ 0/1:133,0,255:99 chr2 96616532 . T G 6.2 . DP=52;VDB=0.0271;AF1=0.4999;AC1=1;DP4=8,27,1,16;MQ=33;FQ=8.65;PV4=0.24,2.9e-14,4.8e-06,1 GT:PL:GQ 0/1:35,0,255:36 chr2 96617194 . A G 19.1 . DP=67;VDB=0.0099;AF1=0.5;AC1=1;DP4=14,33,6,14;MQ=46;FQ=22;PV4=1,1.2e-35,1.2e-10,1 GT:PL:GQ 0/1:49,0,255:52 chr2 96617209 . G T 58 . DP=65;VDB=0.0216;AF1=0.5;AC1=1;DP4=12,32,6,15;MQ=48;FQ=61;PV4=1,4.8e-21,7.3e-12,1 GT:PL:GQ 0/1:88,0,255:91 chr2 96617228 . T A 9.52 . DP=41;VDB=0.0190;AF1=0.5;AC1=1;DP4=7,23,3,8;MQ=46;FQ=12.3;PV4=1,4.6e-16,6.2e-05,0.29 GT:PL:GQ 0/1:39,0,255:41 chr2 96617231 . G A 163 . DP=38;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,13,4,17;MQ=46;FQ=166;PV4=1,0.33,4.7e-08,0.21 GT:PL:GQ 0/1:193,0,230:99 chr2 96617256 . A G 104 . DP=18;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,10,0,8;MQ=53;FQ=107;PV4=1,1,0.013,1 GT:PL:GQ 0/1:134,0,160:99 chr2 96619612 . C T 4.13 . DP=3;VDB=0.0182;AF1=0.5001;AC1=1;DP4=1,0,2,0;MQ=35;FQ=3.48;PV4=1,0.032,0.057,1 GT:PL:GQ 0/1:32,0,30:30 chr2 96619688 . T G 214 . DP=80;VDB=0.0033;AF1=0.5;AC1=1;DP4=23,4,40,6;MQ=42;FQ=216;PV4=1,1,1.1e-08,0.3 GT:PL:GQ 0/1:244,0,250:99 chr2 96619734 . C T 225 . DP=121;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,17,38,17;MQ=46;FQ=225;PV4=0.52,3.8e-05,4.8e-11,0.17 GT:PL:GQ 0/1:255,0,255:99 chr2 96619774 . G A 97 . DP=81;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,19,5,25;MQ=50;FQ=100;PV4=0.051,6.1e-20,1.4e-10,1 GT:PL:GQ 0/1:127,0,255:99 chr2 96619799 . A C 23 . DP=60;VDB=0.0118;AF1=0.5;AC1=1;DP4=5,17,0,37;MQ=47;FQ=26;PV4=0.0053,1.8e-29,5.1e-07,1 GT:PL:GQ 0/1:53,0,255:56 chr2 96619832 . A G 27 . DP=24;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,8,0,6;MQ=51;FQ=30;PV4=1,0.0088,0.0082,0.027 GT:PL:GQ 0/1:57,0,153:60 chr2 96698185 . G A 118 . DP=14;VDB=0.0081;AF1=1;AC1=2;DP4=0,1,0,13;MQ=33;FQ=-53;PV4=1,0.37,1,0.3 GT:PL:GQ 1/1:151,26,0:49 chr2 96780716 . T G 225 . DP=125;VDB=0.0392;AF1=0.5;AC1=1;DP4=27,31,38,27;MQ=59;FQ=225;PV4=0.21,1,0.19,0.23 GT:PL:GQ 0/1:255,0,255:99 chr2 96780986 . ctcctcctcttc cTCCTCCTCTtcctcctcttc 217 . INDEL;DP=83;VDB=0.0399;AF1=0.5;AC1=1;DP4=27,9,15,14;MQ=54;FQ=217;PV4=0.069,1,8.8e-10,0.28 GT:PL:GQ 0/1:255,0,255:99 chr2 96789787 . T C 167 . DP=52;VDB=0.0384;AF1=0.5;AC1=1;DP4=12,16,10,14;MQ=60;FQ=170;PV4=1,2.7e-14,1,0.15 GT:PL:GQ 0/1:197,0,255:99 chr2 96795608 . T G 17.1 . DP=5;VDB=0.0309;AF1=0.502;AC1=1;DP4=1,0,2,2;MQ=60;FQ=-6.97;PV4=1,0.0036,1,0.25 GT:PL:GQ 0/1:47,0,21:24 chr2 96795714 . G A 99 . DP=15;VDB=0.0359;AF1=0.5;AC1=1;DP4=6,0,6,3;MQ=60;FQ=67;PV4=0.23,0.055,1,0.39 GT:PL:GQ 0/1:129,0,94:97 chr2 96795857 . T C 214 . DP=33;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,14,18;MQ=60;FQ=-123 GT:PL:GQ 1/1:247,96,0:99 chr2 96795944 . A G 32 . DP=22;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,10,1,7;MQ=60;FQ=35;PV4=1,3.7e-06,1,0.13 GT:PL:GQ 0/1:62,0,236:65 chr2 96798510 . G A 46 . DP=23;VDB=0.0373;AF1=0.5;AC1=1;DP4=5,11,2,5;MQ=60;FQ=49;PV4=1,6.2e-08,1,1 GT:PL:GQ 0/1:76,0,255:79 chr2 96920526 . C G 17.1 . DP=10;VDB=0.0006;AF1=0.5;AC1=1;DP4=5,0,5,0;MQ=60;FQ=20.1;PV4=1,2.4e-09,1,1 GT:PL:GQ 0/1:47,0,118:50 chr2 96943635 . G A 225 . DP=49;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,10,21,7;MQ=60;FQ=225;PV4=0.13,1,1,0.3 GT:PL:GQ 0/1:255,0,255:99 chr2 96943897 . C G 95 . DP=52;VDB=0.0164;AF1=0.5;AC1=1;DP4=18,5,27,2;MQ=60;FQ=98;PV4=0.22,2.3e-09,1,0.49 GT:PL:GQ 0/1:125,0,245:99 chr2 96944553 . G A 116 . DP=103;VDB=0.0400;AF1=0.5;AC1=1;DP4=34,22,21,24;MQ=59;FQ=119;PV4=0.17,3e-44,1,0.011 GT:PL:GQ 0/1:146,0,255:99 chr2 96956315 . T G 159 . DP=41;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,9,32;MQ=59;FQ=-150 GT:PL:GQ 1/1:192,123,0:99 chr2 96991492 . A G 222 . DP=79;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,60,16;MQ=60;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr2 97019144 . A G 163 . DP=50;VDB=0.0271;AF1=0.5;AC1=1;DP4=12,12,16,10;MQ=60;FQ=166;PV4=0.57,4.1e-16,0.17,1 GT:PL:GQ 0/1:193,0,255:99 chr2 97166204 . A G 225 . DP=47;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,15,8,16;MQ=59;FQ=225;PV4=0.76,0.27,0.18,0.35 GT:PL:GQ 0/1:255,0,255:99 chr2 97351840 . A G 225 . DP=46;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,14,6,14;MQ=59;FQ=225;PV4=0.75,1,0.47,1 GT:PL:GQ 0/1:255,0,255:99 chr2 97353725 . G A 26 . DP=22;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,8,0,11;MQ=59;FQ=29;PV4=0.45,1.1e-08,0.19,1 GT:PL:GQ 0/1:56,0,161:59 chr2 97360079 . C T 92 . DP=32;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,2,14,2;MQ=60;FQ=95;PV4=1,6.7e-08,1,0.48 GT:PL:GQ 0/1:122,0,197:99 chr2 97365213 . C T 48 . DP=16;VDB=0.0053;AF1=0.5;AC1=1;DP4=6,0,8,0;MQ=60;FQ=51;PV4=1,3.7e-08,1,0.39 GT:PL:GQ 0/1:78,0,121:81 chr2 97368448 . G A 184 . DP=113;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,35,18,47;MQ=60;FQ=187;PV4=0.5,8e-34,1,1 GT:PL:GQ 0/1:214,0,255:99 chr2 97400324 . A G 225 . DP=66;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,24,10,20;MQ=60;FQ=225;PV4=0.79,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 97529360 . T A 88 . DP=40;VDB=0.0118;AF1=0.5;AC1=1;DP4=17,7,13,3;MQ=59;FQ=91;PV4=0.71,1.7e-13,1,1 GT:PL:GQ 0/1:118,0,255:99 chr2 97544089 . G C 17.1 . DP=7;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=57;FQ=18.6;PV4=1,0.00076,0.29,0.15 GT:PL:GQ 0/1:47,0,51:48 chr2 97559759 . G A 183 . DP=47;VDB=0.0384;AF1=0.5;AC1=1;DP4=7,10,19,11;MQ=60;FQ=186;PV4=0.22,1.1e-08,0.23,0.037 GT:PL:GQ 0/1:213,0,250:99 chr2 97560913 . C T 113 . DP=29;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,10,2,13;MQ=60;FQ=116;PV4=0.64,9e-08,1,1 GT:PL:GQ 0/1:143,0,214:99 chr2 97587049 . T C 50 . DP=12;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,1,3,6;MQ=60;FQ=42.6;PV4=0.52,5.6e-07,1,0.3 GT:PL:GQ 0/1:80,0,70:73 chr2 97595109 . T C 222 . DP=25;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,8,15;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr2 97613616 . T C 222 . DP=38;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,15;MQ=59;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr2 97613748 . C A 208 . DP=16;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-63 GT:PL:GQ 1/1:241,36,0:69 chr2 97617140 . T C 222 . DP=34;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,19,15;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr2 97617227 . A G 128 . DP=32;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,6,22;MQ=58;FQ=-111 GT:PL:GQ 1/1:161,84,0:99 chr2 97637516 . T C 169 . DP=15;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,15,0;MQ=60;FQ=-72 GT:PL:GQ 1/1:202,45,0:87 chr2 97637905 . T C 222 . DP=32;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,18,11;MQ=59;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr2 97638038 . A G 222 . DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,12;MQ=59;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr2 97638311 . G A 87 . DP=34;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,11,7,8;MQ=59;FQ=90;PV4=1,5e-10,1,0.49 GT:PL:GQ 0/1:117,0,255:99 chr2 97643576 . T C 222 . DP=99;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,22,70;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 97747978 . C T 67.3 . DP=5;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,1;MQ=29;FQ=-42 GT:PL:GQ 1/1:100,15,0:27 chr2 97751786 . G A 40.1 . DP=7;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,6,0;MQ=21;FQ=-45 GT:PL:GQ 1/1:73,18,0:33 chr2 97757509 . C T 137 . DP=79;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,16,55;MQ=58;FQ=-203;PV4=1,4.8e-09,0.36,0.45 GT:PL:GQ 1/1:170,176,0:99 chr2 97779487 . GC G 217 . INDEL;DP=58;VDB=0.0244;AF1=0.5;AC1=1;DP4=25,7,15,10;MQ=60;FQ=217;PV4=0.16,7.2e-05,0.13,0.29 GT:PL:GQ 0/1:255,0,255:99 chr2 97814956 . G A 177 . DP=12;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,1;MQ=47;FQ=-63 GT:PL:GQ 1/1:210,36,0:69 chr2 97817511 . T C 54 . DP=11;VDB=0.0053;AF1=0.5005;AC1=1;DP4=3,0,7,1;MQ=31;FQ=3.02;PV4=1,0.00021,1,0.22 GT:PL:GQ 0/1:84,0,27:30 chr2 97817545 . A T 43 . DP=13;VDB=0.0019;AF1=0.5;AC1=1;DP4=7,0,5,1;MQ=34;FQ=45.9;PV4=0.46,2.1e-07,0.3,1 GT:PL:GQ 0/1:73,0,91:76 chr2 97817564 . CT CTT 90.5 . INDEL;DP=11;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,10,1;MQ=31;FQ=-67.5 GT:PL:GQ 1/1:131,33,0:63 chr2 97817578 . T C 43 . DP=15;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,2,6,2;MQ=33;FQ=46;PV4=1,6.8e-08,0.21,1 GT:PL:GQ 0/1:73,0,111:76 chr2 97818348 . A G 222 . DP=29;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,20;MQ=55;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr2 97820349 . C T 12.3 . DP=7;VDB=0.0218;AF1=0.5;AC1=1;DP4=2,1,4,0;MQ=42;FQ=15.1;PV4=0.43,1,7.4e-05,1 GT:PL:GQ 0/1:42,0,68:44 chr2 97823971 . T C 53.2 . DP=9;VDB=0.0380;AF1=0.7304;AC1=1;DP4=0,1,2,6;MQ=55;FQ=-25;PV4=1,7.2e-05,1,0.27 GT:PL:GQ 0/1:82,0,2:5 chr2 97827700 . A G 13 . DP=3;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,2,0;MQ=29;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr2 97827757 . A G 43 . DP=8;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,0,4,1;MQ=32;FQ=42.5;PV4=1,0.001,0.037,0.04 GT:PL:GQ 0/1:73,0,72:72 chr2 97827787 . G A 58 . DP=11;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,1,3,3;MQ=32;FQ=54;PV4=0.57,0.0069,0.11,1 GT:PL:GQ 0/1:88,0,82:84 chr2 97827800 . A G 31 . DP=11;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,0,3,2;MQ=30;FQ=31;PV4=0.46,0.0014,0.19,1 GT:PL:GQ 0/1:61,0,61:61 chr2 97828982 . C T 4.13 . DP=6;VDB=0.0098;AF1=0.4998;AC1=1;DP4=3,0,0,3;MQ=34;FQ=6.2;PV4=0.1,0.027,0.049,1 GT:PL:GQ 0/1:32,0,74:31 chr2 97829003 . caaaaataaaaaaa caaaaa 16.6 . INDEL;DP=12;VDB=0.0081;AF1=0.5;AC1=1;DP4=6,0,0,6;MQ=31;FQ=19.5;PV4=0.0022,1.7e-07,0.0086,1 GT:PL:GQ 0/1:54,0,129:57 chr2 97830104 . G A 93 . DP=42;VDB=0.0004;AF1=0.5;AC1=1;DP4=24,2,9,5;MQ=45;FQ=96;PV4=0.039,0.033,1.5e-06,1 GT:PL:GQ 0/1:123,0,226:99 chr2 97833342 . G A 47 . DP=36;VDB=0.0099;AF1=0.5;AC1=1;DP4=7,7,1,21;MQ=27;FQ=50;PV4=0.0026,4.9e-11,4e-05,1 GT:PL:GQ 0/1:77,0,180:80 chr2 97833361 . A G 53 . DP=35;VDB=0.0053;AF1=0.5;AC1=1;DP4=9,9,1,15;MQ=31;FQ=56;PV4=0.0079,0.17,3.3e-05,0.28 GT:PL:GQ 0/1:83,0,255:86 chr2 97833466 . C T 100 . DP=85;VDB=0.0244;AF1=0.5;AC1=1;DP4=32,12,40,0;MQ=28;FQ=103;PV4=0.00024,0.00049,0.39,1 GT:PL:GQ 0/1:130,0,225:99 chr2 97833553 . C T 83 . DP=37;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,15,4,13;MQ=25;FQ=86;PV4=0.69,2.3e-14,1,1 GT:PL:GQ 0/1:113,0,148:99 chr2 97833567 . A G 20 . DP=28;VDB=0.0025;AF1=0.5;AC1=1;DP4=1,15,1,10;MQ=25;FQ=23;PV4=1,1.7e-20,1,1 GT:PL:GQ 0/1:50,0,117:53 chr2 97833569 . C T 37 . DP=28;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,13,1,13;MQ=26;FQ=40;PV4=1,5.5e-16,1,1 GT:PL:GQ 0/1:67,0,112:70 chr2 97833583 . C T 25 . DP=24;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,11,0,13;MQ=26;FQ=28;PV4=1,7.9e-22,1,0.26 GT:PL:GQ 0/1:55,0,87:58 chr2 97851069 . A G 72 . DP=16;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,16,0;MQ=37;FQ=-75 GT:PL:GQ 1/1:105,48,0:93 chr2 97877292 . C A 56.1 . DP=9;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:89,21,0:39 chr2 97877399 . T C 216 . DP=84;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,71,12;MQ=59;FQ=-277 GT:PL:GQ 1/1:249,250,0:99 chr2 97877440 . T C 225 . DP=132;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,14,57,30;MQ=60;FQ=225;PV4=1,0.17,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 97877478 . G A 123 . DP=115;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,30,28,33;MQ=60;FQ=126;PV4=0.7,1.5e-41,0.18,1 GT:PL:GQ 0/1:153,0,255:99 chr2 98196849 . G A 108 . DP=6;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,6,0;MQ=56;FQ=-45 GT:PL:GQ 1/1:141,18,0:33 chr2 98196859 . T G 53 . DP=8;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,8,0;MQ=57;FQ=-51 GT:PL:GQ 1/1:86,24,0:45 chr2 98206188 . C G 201 . DP=29;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,6,23;MQ=60;FQ=-114 GT:PL:GQ 1/1:234,87,0:99 chr2 98273290 . C T 80 . DP=19;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,1;MQ=60;FQ=-75 GT:PL:GQ 1/1:113,48,0:93 chr2 98273661 . A G 66.1 . DP=9;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,3;MQ=60;FQ=-48 GT:PL:GQ 1/1:99,21,0:39 chr2 98274527 . G C 181 . DP=64;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,32,30;MQ=60;FQ=-214 GT:PL:GQ 1/1:214,187,0:99 chr2 98275354 . G A 181 . DP=56;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,14,16,14;MQ=60;FQ=184;PV4=0.79,1.3e-10,1,1 GT:PL:GQ 0/1:211,0,255:99 chr2 98351654 . TGGGG TGGG 71.5 . INDEL;DP=18;VDB=0.0033;AF1=0.5;AC1=1;DP4=5,1,11,1;MQ=60;FQ=33.5;PV4=1,0.0014,1,1 GT:PL:GQ 0/1:109,0,68:71 chr2 98354139 . G T 181 . DP=92;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,23,25,24;MQ=59;FQ=184;PV4=0.52,2.6e-21,1,0.5 GT:PL:GQ 0/1:211,0,255:99 chr2 98354511 . G A 160 . DP=54;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,11,14,15;MQ=60;FQ=163;PV4=1,8.7e-13,0.2,1 GT:PL:GQ 0/1:190,0,255:99 chr2 98355990 . G A 66 . DP=5;VDB=0.0254;AF1=0.5008;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-4.12;PV4=1,0.063,1,0.14 GT:PL:GQ 0/1:96,0,25:28 chr2 98377512 . A T 25 . DP=3;VDB=0.0125;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:57,9,0:15 chr2 98382886 . G A 77 . DP=68;VDB=0.0216;AF1=0.5;AC1=1;DP4=29,3,33,1;MQ=59;FQ=80;PV4=0.35,3e-22,0.084,1 GT:PL:GQ 0/1:107,0,252:99 chr2 98392302 . G A 225 . DP=31;VDB=0.0081;AF1=0.5;AC1=1;DP4=9,2,16,4;MQ=60;FQ=162;PV4=1,0.2,1,1 GT:PL:GQ 0/1:255,0,189:99 chr2 98409046 . G A 173 . DP=56;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,16,16,13;MQ=60;FQ=176;PV4=0.18,2e-08,1,0.13 GT:PL:GQ 0/1:203,0,255:99 chr2 98449796 . C T 80.5 . DP=5;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:113,12,0:21 chr2 98525107 . T C 218 . DP=31;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,21;MQ=59;FQ=-120 GT:PL:GQ 1/1:251,93,0:99 chr2 98544058 . T C 10.2 . DP=2;VDB=0.0131;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:41,6,0:8 chr2 98611833 . T C 8.44 . DP=2;VDB=0.0171;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr2 98611994 . G T 119 . DP=5;VDB=0.0263;AF1=1;AC1=2;DP4=0,0,3,2;MQ=60;FQ=-42 GT:PL:GQ 1/1:152,15,0:27 chr2 98795792 . C G 225 . DP=89;VDB=0.0298;AF1=0.5;AC1=1;DP4=22,22,26,17;MQ=59;FQ=225;PV4=0.39,1,0.49,1 GT:PL:GQ 0/1:255,0,255:99 chr2 98795873 . TGG TGGG 214 . INDEL;DP=78;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,19,52;MQ=60;FQ=-249 GT:PL:GQ 1/1:255,214,0:99 chr2 98804314 . G A 5.46 . DP=6;VDB=0.0082;AF1=0.4999;AC1=1;DP4=2,0,4,0;MQ=60;FQ=7.77;PV4=1,0.0003,1,1 GT:PL:GQ 0/1:34,0,54:34 chr2 98811075 . A G 61 . DP=23;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,11,0,12;MQ=60;FQ=64;PV4=1,8.5e-12,1,1 GT:PL:GQ 0/1:91,0,160:94 chr2 98844575 . A G 36 . DP=11;VDB=0.0011;AF1=0.5;AC1=1;DP4=6,0,5,0;MQ=58;FQ=39;PV4=1,0.053,0.15,1 GT:PL:GQ 0/1:66,0,104:69 chr2 98844674 . C G 225 . DP=86;VDB=0.0399;AF1=0.5;AC1=1;DP4=28,16,25,12;MQ=60;FQ=225;PV4=0.82,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 98853173 . G A 225 . DP=112;VDB=0.0345;AF1=0.5;AC1=1;DP4=27,23,27,34;MQ=59;FQ=225;PV4=0.34,1,0.057,1 GT:PL:GQ 0/1:255,0,255:99 chr2 98862097 . A G 108 . DP=62;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,19,5,31;MQ=59;FQ=111;PV4=0.5,1e-25,1,0.31 GT:PL:GQ 0/1:138,0,255:99 chr2 98887116 . G C 75 . DP=22;VDB=0.0140;AF1=0.5;AC1=1;DP4=13,0,6,0;MQ=60;FQ=78;PV4=1,0.12,1,0.44 GT:PL:GQ 0/1:105,0,177:99 chr2 98928494 . G A 177 . DP=54;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,32,21;MQ=59;FQ=-187 GT:PL:GQ 1/1:210,160,0:99 chr2 98948224 . C A 46 . DP=33;VDB=0.0393;AF1=0.5;AC1=1;DP4=3,19,2,9;MQ=59;FQ=49;PV4=1,4.3e-11,0.08,0.087 GT:PL:GQ 0/1:76,0,252:79 chr2 98986510 . T C 155 . DP=61;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,19,12,14;MQ=60;FQ=158;PV4=0.79,1.6e-16,1,0.25 GT:PL:GQ 0/1:185,0,255:99 chr2 99008428 . G A 126 . DP=24;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,8,3,10;MQ=59;FQ=129;PV4=1,0.0012,1,1 GT:PL:GQ 0/1:156,0,166:99 chr2 99272802 . G A 109 . DP=66;VDB=0.0190;AF1=0.5;AC1=1;DP4=32,6,21,6;MQ=60;FQ=112;PV4=0.53,2.2e-30,1,0.096 GT:PL:GQ 0/1:139,0,255:99 chr2 99695097 . A G 213 . DP=75;VDB=0.0099;AF1=0.5;AC1=1;DP4=36,1,35,2;MQ=60;FQ=193;PV4=1,0.4,1,1 GT:PL:GQ 0/1:243,0,220:99 chr2 99695254 . A G 117 . DP=111;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,52,8,36;MQ=59;FQ=120;PV4=0.81,4.4e-39,1,1 GT:PL:GQ 0/1:147,0,255:99 chr2 99725223 . A G 39.3 . DP=5;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:72,15,0:27 chr2 99725479 . AT ATT 214 . INDEL;DP=15;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-79.5 GT:PL:GQ 1/1:255,45,0:87 chr2 99726043 . A G 81 . DP=10;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:114,30,0:57 chr2 99757696 . T C 32 . DP=19;VDB=0.0384;AF1=0.5;AC1=1;DP4=6,5,1,4;MQ=60;FQ=35;PV4=0.31,0.04,1,1 GT:PL:GQ 0/1:62,0,200:65 chr2 99771533 . C T 162 . DP=25;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,18;MQ=60;FQ=-96 GT:PL:GQ 1/1:195,69,0:99 chr2 99771590 . G T 149 . DP=9;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:182,24,0:45 chr2 99778985 . T C 201 . DP=167;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,69,90;MQ=60;FQ=-282 GT:PL:GQ 1/1:234,255,0:99 chr2 99779131 . T C 184 . DP=139;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,73,61;MQ=60;FQ=-282 GT:PL:GQ 1/1:217,255,0:99 chr2 99802820 . A G 51 . DP=8;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:84,24,0:45 chr2 99804642 . T C 132 . DP=13;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,7,4;MQ=60;FQ=-60 GT:PL:GQ 1/1:165,33,0:63 chr2 99811894 . C T 117 . DP=18;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,17,1;MQ=59;FQ=-81 GT:PL:GQ 1/1:150,54,0:99 chr2 99812070 . G A 222 . DP=73;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,25,45;MQ=59;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr2 99918180 . caaaaaaaaaa cAAaaaaaaaaaa,cAaaaaaaaaaa 76.5 . INDEL;DP=15;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,12,2;MQ=47;FQ=-73.5 GT:PL:GQ 1/1:117,39,0,119,30,116:75 chr2 99954735 . C A 194 . DP=39;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,28,10;MQ=60;FQ=-141 GT:PL:GQ 1/1:227,114,0:99 chr2 100176775 . A G 36 . DP=14;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,2,6,0;MQ=60;FQ=39;PV4=0.47,5.5e-07,1,1 GT:PL:GQ 0/1:66,0,183:69 chr2 100343557 . C T 222 . DP=107;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,40,66;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 100454085 . T A 123 . DP=41;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,19,5,10;MQ=60;FQ=126;PV4=0.72,4.4e-07,1,0.14 GT:PL:GQ 0/1:153,0,255:99 chr2 100623130 . G A 68 . DP=33;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,6,15,0;MQ=60;FQ=71;PV4=0.019,6e-13,1,0.47 GT:PL:GQ 0/1:98,0,255:99 chr2 101086894 . G A 108 . DP=39;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,34,1;MQ=60;FQ=-132 GT:PL:GQ 1/1:141,105,0:99 chr2 101086966 . C T 168 . DP=129;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,72,51;MQ=60;FQ=-282 GT:PL:GQ 1/1:201,255,0:99 chr2 101087104 . C T 154 . DP=52;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,47;MQ=59;FQ=-175 GT:PL:GQ 1/1:187,148,0:99 chr2 101096802 . A G 60 . DP=9;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:93,24,0:45 chr2 101096834 . C A 149 . DP=15;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,12,3;MQ=60;FQ=-72 GT:PL:GQ 1/1:182,45,0:87 chr2 101096860 . T C 199 . DP=21;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,13,7;MQ=59;FQ=-87 GT:PL:GQ 1/1:232,60,0:99 chr2 101096903 . T C 197 . DP=21;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,13;MQ=59;FQ=-87 GT:PL:GQ 1/1:230,60,0:99 chr2 101096960 . C T 181 . DP=18;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,6,11;MQ=60;FQ=-78 GT:PL:GQ 1/1:214,51,0:99 chr2 101126124 . T A 115 . DP=46;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,5,37;MQ=59;FQ=-153 GT:PL:GQ 1/1:148,126,0:99 chr2 101186088 . C T 52 . DP=19;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,18,0;MQ=57;FQ=-81 GT:PL:GQ 1/1:85,54,0:99 chr2 101188373 . CCTGTGTATGAG CCTGTGTATGAGTGACTGTGTATGAG 214 . INDEL;DP=42;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,20;MQ=39;FQ=-104 GT:PL:GQ 1/1:255,69,0:99 chr2 101521173 . attttttttttttttttt attttttttttttttt,atttttttttttttt,atttttttttttttttt 17.6 . INDEL;DP=25;VDB=0.0359;AF1=1;AC1=2;DP4=1,0,4,10;MQ=58;FQ=-57.5;PV4=0.33,1,0.4,0.26 GT:PL:GQ 1/1:58,23,0,54,16,51,63,13,56,57:36 chr2 101541798 . C T 16.1 . DP=19;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,9,0,7;MQ=59;FQ=19.1;PV4=0.26,1.4e-07,0.099,0.28 GT:PL:GQ 0/1:46,0,233:49 chr2 101581246 . C T 219 . DP=36;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,3,16,3;MQ=60;FQ=220;PV4=1,0.074,1,0.42 GT:PL:GQ 0/1:249,0,251:99 chr2 101612051 . G A 16.1 . DP=12;VDB=0.0197;AF1=0.5;AC1=1;DP4=3,4,2,2;MQ=60;FQ=19.1;PV4=1,0.02,1,0.46 GT:PL:GQ 0/1:46,0,161:49 chr2 101619283 . C G 225 . DP=76;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,15,24,10;MQ=60;FQ=225;PV4=0.62,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 101619321 . T C 185 . DP=91;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,25,22,22;MQ=60;FQ=188;PV4=0.83,4.3e-19,0.15,1 GT:PL:GQ 0/1:215,0,255:99 chr2 101622696 . TGGG TGGGG 177 . INDEL;DP=42;VDB=0.0398;AF1=0.5;AC1=1;DP4=15,8,7,8;MQ=60;FQ=180;PV4=0.32,1,1,0.014 GT:PL:GQ 0/1:215,0,243:99 chr2 101624471 . T C 69 . DP=77;VDB=0.0393;AF1=0.5;AC1=1;DP4=21,26,10,17;MQ=60;FQ=72;PV4=0.63,1.5e-32,0.094,0.044 GT:PL:GQ 0/1:99,0,255:99 chr2 101627852 . C T 21 . DP=7;VDB=0.0033;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=21.9;PV4=1,0.0015,1,0.2 GT:PL:GQ 0/1:51,0,53:52 chr2 101638888 . A G 225 . DP=59;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,11,16,17;MQ=60;FQ=225;PV4=0.61,0.37,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 101646144 . G A 193 . DP=92;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,21,22,30;MQ=60;FQ=196;PV4=0.83,8.7e-21,1,0.47 GT:PL:GQ 0/1:223,0,255:99 chr2 101656726 . T C 225 . DP=78;VDB=0.0271;AF1=0.5;AC1=1;DP4=24,20,16,14;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 101869588 . G T 57 . DP=20;VDB=0.0099;AF1=0.5;AC1=1;DP4=7,4,8,1;MQ=60;FQ=60;PV4=0.32,2.7e-05,1,1 GT:PL:GQ 0/1:87,0,203:90 chr2 101874442 . C T 225 . DP=56;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,14,9,21;MQ=60;FQ=225;PV4=0.27,0.059,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 101878882 . C T 30 . DP=12;VDB=0.0003;AF1=0.5;AC1=1;DP4=4,0,7,0;MQ=58;FQ=33;PV4=1,3.9e-07,0.24,0.49 GT:PL:GQ 0/1:60,0,90:63 chr2 101883046 . A G 156 . DP=22;VDB=0.0011;AF1=0.5;AC1=1;DP4=10,0,11,1;MQ=60;FQ=121;PV4=1,0.35,1,0.35 GT:PL:GQ 0/1:186,0,148:99 chr2 101889306 . A G 144 . DP=18;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,1,13,0;MQ=60;FQ=76;PV4=0.28,1,1,1 GT:PL:GQ 0/1:174,0,103:99 chr2 101898412 . G C 222 . DP=41;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,18;MQ=58;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr2 101911385 . A G 225 . DP=93;VDB=0.0322;AF1=0.5;AC1=1;DP4=41,15,32,5;MQ=59;FQ=225;PV4=0.2,0.068,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr2 101967346 . C T 44 . DP=77;VDB=0.0190;AF1=0.5;AC1=1;DP4=31,12,28,4;MQ=60;FQ=47;PV4=0.16,7.5e-46,1,1 GT:PL:GQ 0/1:74,0,255:77 chr2 101971618 . T C 49 . DP=15;VDB=0.0006;AF1=0.5;AC1=1;DP4=7,0,8,0;MQ=60;FQ=52;PV4=1,3.7e-09,1,1 GT:PL:GQ 0/1:79,0,134:82 chr2 102029302 . G A 26 . DP=15;VDB=0.0216;AF1=0.5;AC1=1;DP4=10,0,4,1;MQ=60;FQ=29;PV4=0.33,5.3e-06,1,0.41 GT:PL:GQ 0/1:56,0,164:59 chr2 102031176 . A G 37.5 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:70,12,0:21 chr2 102031489 . C G 94 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,15,0,10;MQ=59;FQ=97;PV4=0.53,1,0.092,1 GT:PL:GQ 0/1:124,0,222:99 chr2 102035192 . C T 13.2 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:45,9,0:14 chr2 102038849 . T A 222 . DP=122;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,32,87;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 102038936 . T G 221 . DP=47;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,17,3,25;MQ=60;FQ=199;PV4=1,0.17,1,1 GT:PL:GQ 0/1:251,0,226:99 chr2 102045607 . C T 72 . DP=59;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,31,2,21;MQ=60;FQ=75;PV4=1,1.3e-26,1,1 GT:PL:GQ 0/1:102,0,255:99 chr2 102066981 . C T 144 . DP=30;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,3,11,1;MQ=60;FQ=147;PV4=0.62,0.26,1,1 GT:PL:GQ 0/1:174,0,250:99 chr2 102083393 . T C 141 . DP=34;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,12,7,10;MQ=59;FQ=144;PV4=0.46,1.9e-06,1,1 GT:PL:GQ 0/1:171,0,242:99 chr2 102314633 . gggcagccggcagccggcagccgg gGGCAGCCggcagccggcagccggcagccgg 54.5 . INDEL;DP=10;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,1,0,3;MQ=47;FQ=13.7;PV4=1,0.47,0.21,1 GT:PL:GQ 0/1:92,0,48:51 chr2 102315057 . A G 16.1 . DP=15;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,6,0,9;MQ=60;FQ=19.1;PV4=1,3.3e-12,1,1 GT:PL:GQ 0/1:46,0,117:49 chr2 102413823 . C T 142 . DP=28;VDB=0.0373;AF1=0.5;AC1=1;DP4=6,12,3,6;MQ=59;FQ=145;PV4=1,0.26,1,1 GT:PL:GQ 0/1:172,0,255:99 chr2 102501891 . A G 5.47 . DP=3;VDB=0.0188;AF1=0.5012;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-5.68;PV4=1,0.12,1,0.46 GT:PL:GQ 0/1:34,0,23:28 chr2 102632582 . T A 26 . DP=15;VDB=0.0001;AF1=0.5;AC1=1;DP4=0,9,0,6;MQ=60;FQ=29;PV4=1,1.7e-05,1,1 GT:PL:GQ 0/1:56,0,149:59 chr2 102774054 . G A 173 . DP=21;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,15,5;MQ=60;FQ=-87 GT:PL:GQ 1/1:206,60,0:99 chr2 102785158 . G T 10.4 . DP=12;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:42,9,0:13 chr2 102788409 . G A 212 . DP=31;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,9,22;MQ=57;FQ=-120 GT:PL:GQ 1/1:245,93,0:99 chr2 102835706 . T C 53 . DP=9;VDB=0.0014;AF1=0.5;AC1=1;DP4=1,4,0,4;MQ=60;FQ=56;PV4=1,0.23,1,0.25 GT:PL:GQ 0/1:83,0,129:86 chr2 102842467 . T C 126 . DP=50;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,16,11,9;MQ=60;FQ=129;PV4=0.57,9.1e-18,1,1 GT:PL:GQ 0/1:156,0,255:99 chr2 102851496 . C T 225 . DP=62;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,16,17,15;MQ=59;FQ=225;PV4=0.8,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 102851708 . T C 52 . DP=17;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,8,1,6;MQ=60;FQ=55;PV4=1,7.5e-07,1,1 GT:PL:GQ 0/1:82,0,167:85 chr2 102954653 . C T 116 . DP=43;VDB=0.0298;AF1=0.5;AC1=1;DP4=16,6,16,5;MQ=59;FQ=119;PV4=1,3e-16,1,1 GT:PL:GQ 0/1:146,0,255:99 chr2 102955468 . C A 165 . DP=104;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,34,16,37;MQ=60;FQ=168;PV4=1,2e-41,1,1 GT:PL:GQ 0/1:195,0,255:99 chr2 102957348 . C T 155 . DP=26;VDB=0.0373;AF1=0.5;AC1=1;DP4=1,10,1,12;MQ=60;FQ=149;PV4=1,0.29,1,0.35 GT:PL:GQ 0/1:185,0,176:99 chr2 102967928 . A G 25 . DP=13;VDB=0.0019;AF1=0.5;AC1=1;DP4=6,0,7,0;MQ=60;FQ=28;PV4=1,2.7e-09,1,1 GT:PL:GQ 0/1:55,0,124:58 chr2 102968007 . G A 225 . DP=67;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,8,29,7;MQ=60;FQ=225;PV4=0.56,0.21,1,0.2 GT:PL:GQ 0/1:255,0,255:99 chr2 102968075 . T C 225 . DP=102;VDB=0.0322;AF1=0.5;AC1=1;DP4=38,15,24,22;MQ=60;FQ=225;PV4=0.061,0.21,0.46,1 GT:PL:GQ 0/1:255,0,255:99 chr2 102968285 . T C 121 . DP=46;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,22,4,18;MQ=60;FQ=124;PV4=0.19,5.5e-21,1,1 GT:PL:GQ 0/1:151,0,213:99 chr2 102968356 . C T 62 . DP=15;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,3,0,11;MQ=60;FQ=33;PV4=1,3.4e-05,1,0.26 GT:PL:GQ 0/1:92,0,60:63 chr2 102968362 . T C 56 . DP=14;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,3,0,10;MQ=60;FQ=40;PV4=1,2e-07,1,1 GT:PL:GQ 0/1:86,0,67:70 chr2 102984624 . C G 7.8 . DP=4;VDB=0.0192;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=10.4;PV4=1,0.012,1,0.15 GT:PL:GQ 0/1:37,0,58:39 chr2 103006448 . C T 225 . DP=58;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,13,25,7;MQ=59;FQ=225;PV4=0.03,0.26,1,0.4 GT:PL:GQ 0/1:255,0,255:99 chr2 103010912 . C T 101 . DP=71;VDB=0.0216;AF1=0.5;AC1=1;DP4=28,3,38,2;MQ=60;FQ=104;PV4=0.65,7.4e-25,0.19,1 GT:PL:GQ 0/1:131,0,247:99 chr2 103039584 . A T 72 . DP=25;VDB=0.0019;AF1=0.5;AC1=1;DP4=9,1,13,0;MQ=60;FQ=75;PV4=0.43,1.5e-08,1,0.24 GT:PL:GQ 0/1:102,0,176:99 chr2 103039873 . C G 107 . DP=53;VDB=0.0066;AF1=0.5;AC1=1;DP4=3,22,3,25;MQ=60;FQ=110;PV4=1,1.9e-17,1,0.42 GT:PL:GQ 0/1:137,0,255:99 chr2 103040247 . TG TGG 98.5 . INDEL;DP=29;VDB=0.0033;AF1=0.5;AC1=1;DP4=17,0,12,0;MQ=60;FQ=101;PV4=1,0.42,1,1 GT:PL:GQ 0/1:136,0,151:99 chr2 103057892 . A G 58 . DP=27;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,10,2,14;MQ=60;FQ=61;PV4=0.51,1.4e-13,1,0.21 GT:PL:GQ 0/1:88,0,149:91 chr2 103059613 . A G 222 . DP=57;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,35,21;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr2 103063520 . G A 94 . DP=20;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,2,8,0;MQ=60;FQ=97;PV4=0.49,0.014,1,0.35 GT:PL:GQ 0/1:124,0,225:99 chr2 103067438 . A T 150 . DP=67;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,15,16,12;MQ=60;FQ=153;PV4=1,2e-22,0.13,1 GT:PL:GQ 0/1:180,0,255:99 chr2 103095404 . G A 225 . DP=91;VDB=0.0398;AF1=0.5;AC1=1;DP4=22,21,24,17;MQ=60;FQ=225;PV4=0.52,0.017,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr2 103120232 . G A 95 . DP=35;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,13,1,15;MQ=59;FQ=98;PV4=0.34,4.8e-10,0.071,1 GT:PL:GQ 0/1:125,0,255:99 chr2 103121654 . G A 115 . DP=31;VDB=0.0099;AF1=0.5;AC1=1;DP4=12,2,13,4;MQ=59;FQ=118;PV4=0.66,4.3e-09,1,0.34 GT:PL:GQ 0/1:145,0,208:99 chr2 103125457 . A G 225 . DP=116;VDB=0.0380;AF1=0.5;AC1=1;DP4=32,27,32,21;MQ=59;FQ=225;PV4=0.57,0.38,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 103125466 . T C 225 . DP=122;VDB=0.0380;AF1=0.5;AC1=1;DP4=31,33,27,28;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 103128866 . T C 117 . DP=11;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,3,2,4;MQ=60;FQ=60;PV4=1,1,1,1 GT:PL:GQ 0/1:147,0,87:90 chr2 103136309 . T C 225 . DP=32;VDB=0.0373;AF1=0.5;AC1=1;DP4=9,4,11,7;MQ=60;FQ=214;PV4=0.72,0.052,1,0.38 GT:PL:GQ 0/1:255,0,241:99 chr2 103136446 . T G 42 . DP=14;VDB=0.0099;AF1=0.5003;AC1=1;DP4=0,2,1,11;MQ=60;FQ=4.13;PV4=1,3.4e-08,1,1 GT:PL:GQ 0/1:72,0,29:32 chr2 103141447 . A G 88 . DP=47;VDB=0.0298;AF1=0.5;AC1=1;DP4=22,4,12,8;MQ=60;FQ=91;PV4=0.091,6.3e-21,1,1 GT:PL:GQ 0/1:118,0,255:99 chr2 103141651 . G C 62 . DP=9;VDB=0.0049;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=60;FQ=65;PV4=1,0.071,1,0.34 GT:PL:GQ 0/1:92,0,122:95 chr2 103149100 . G A 143 . DP=37;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,13,6,13;MQ=59;FQ=146;PV4=0.46,6.3e-07,0.096,0.03 GT:PL:GQ 0/1:173,0,233:99 chr2 103149162 . A G 66 . DP=20;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,8,2,9;MQ=60;FQ=69;PV4=1,4.4e-08,1,1 GT:PL:GQ 0/1:96,0,167:99 chr2 103149182 . A G 78 . DP=14;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,5,1,8;MQ=60;FQ=76.9;PV4=1,1.3e-07,1,1 GT:PL:GQ 0/1:108,0,106:99 chr2 103300506 . A G 172 . DP=32;VDB=0.0140;AF1=0.5;AC1=1;DP4=19,1,8,3;MQ=60;FQ=175;PV4=0.12,0.25,1,0.17 GT:PL:GQ 0/1:202,0,219:99 chr2 103324575 . T C 79.2 . DP=5;VDB=0.0033;AF1=0.7304;AC1=1;DP4=1,0,4,0;MQ=55;FQ=-25;PV4=1,1,1,1 GT:PL:GQ 0/1:108,0,2:5 chr2 103324937 . G C 225 . DP=69;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,17,12,19;MQ=60;FQ=225;PV4=0.23,1,1,0.094 GT:PL:GQ 0/1:255,0,255:99 chr2 103343234 . G C 72 . DP=8;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:105,24,0:45 chr2 103431404 . T C 222 . DP=52;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,46;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr2 104995800 . C T 152 . DP=128;VDB=0.0399;AF1=0.5;AC1=1;DP4=36,37,23,29;MQ=60;FQ=155;PV4=0.59,3e-38,0.4,1 GT:PL:GQ 0/1:182,0,255:99 chr2 105665808 . C T 225 . DP=42;VDB=0.0384;AF1=0.5;AC1=1;DP4=5,14,9,12;MQ=59;FQ=225;PV4=0.33,0.26,0.088,0.04 GT:PL:GQ 0/1:255,0,255:99 chr2 105705507 . C T 68 . DP=30;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,6,5,8;MQ=60;FQ=71;PV4=0.27,3.8e-12,1,1 GT:PL:GQ 0/1:98,0,255:99 chr2 105706584 . Aaaaacaaaacaaaacaaaacaaaa Aaaaacaaaacaaaacaaaa 129 . INDEL;DP=9;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,2,0,4;MQ=60;FQ=114;PV4=0.43,0.39,1,1 GT:PL:GQ 0/1:167,0,149:99 chr2 105707766 . G A 138 . DP=39;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,10,11,9;MQ=60;FQ=141;PV4=0.75,2.9e-12,1,1 GT:PL:GQ 0/1:168,0,255:99 chr2 105708997 . G A 137 . DP=56;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,18,7,28;MQ=60;FQ=140;PV4=0.46,2.7e-21,1,1 GT:PL:GQ 0/1:167,0,217:99 chr2 105709023 . T C 222 . DP=45;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,36;MQ=60;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr2 105713697 . A G 137 . DP=56;VDB=0.0400;AF1=0.5;AC1=1;DP4=19,15,15,7;MQ=60;FQ=140;PV4=0.41,2.9e-07,1,1 GT:PL:GQ 0/1:167,0,255:99 chr2 105713868 . A G 12.3 . DP=6;VDB=0.0050;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=15.1;PV4=1,0.013,1,1 GT:PL:GQ 0/1:42,0,77:44 chr2 105885961 . T C 164 . DP=27;VDB=0.0164;AF1=0.5;AC1=1;DP4=10,7,6,4;MQ=60;FQ=167;PV4=1,1,1,1 GT:PL:GQ 0/1:194,0,255:99 chr2 105897261 . C T 222 . DP=21;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,18;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr2 105994498 . C A 82 . DP=53;VDB=0.0298;AF1=0.5;AC1=1;DP4=25,5,16,7;MQ=60;FQ=85;PV4=0.32,4.1e-20,1,1 GT:PL:GQ 0/1:112,0,255:99 chr2 106013216 . T C 222 . DP=95;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,9,85;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 106015500 . C G 120 . DP=51;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,7,12,16;MQ=60;FQ=123;PV4=0.15,1.3e-08,1,0.31 GT:PL:GQ 0/1:150,0,209:99 chr2 106471393 . T C 130 . DP=29;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,26,3;MQ=60;FQ=-114 GT:PL:GQ 1/1:163,87,0:99 chr2 106687456 . G C 155 . DP=40;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,19,3,9;MQ=59;FQ=158;PV4=1,0.36,1,0.39 GT:PL:GQ 0/1:185,0,255:99 chr2 106690542 . G A 4.61 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:34,6,0:5 chr2 106713480 . C G 94 . DP=74;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,15,22,16;MQ=60;FQ=97;PV4=1,8.1e-32,1,1 GT:PL:GQ 0/1:124,0,255:99 chr2 106715342 . G A 202 . DP=20;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,17;MQ=60;FQ=-81 GT:PL:GQ 1/1:235,54,0:99 chr2 106742139 . C T 222 . DP=38;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,17,17;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr2 106742177 . T A 214 . DP=31;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,19;MQ=59;FQ=-117 GT:PL:GQ 1/1:247,90,0:99 chr2 106780015 . C T 179 . DP=10;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:212,30,0:57 chr2 106780055 . C CTG 214 . INDEL;DP=24;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,9;MQ=60;FQ=-107 GT:PL:GQ 1/1:255,72,0:99 chr2 106782398 . C G 200 . DP=12;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:233,36,0:69 chr2 106810727 . A G 65.5 . DP=6;VDB=0.0263;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:98,12,0:21 chr2 106992952 . A G 13.2 . DP=47;VDB=0.0014;AF1=0.5;AC1=1;DP4=25,12,8,1;MQ=48;FQ=16.1;PV4=0.41,1,1e-06,1 GT:PL:GQ 0/1:43,0,255:46 chr2 106992963 . A AG 79.5 . INDEL;DP=48;VDB=0.0298;AF1=0.5;AC1=1;DP4=21,14,9,4;MQ=50;FQ=82.5;PV4=0.74,0.00097,5.4e-09,0.18 GT:PL:GQ 0/1:117,0,255:99 chr2 107007467 . G A 70 . DP=82;VDB=0.0322;AF1=0.5;AC1=1;DP4=33,23,13,12;MQ=45;FQ=73;PV4=0.63,1,9e-21,1 GT:PL:GQ 0/1:100,0,255:99 chr2 107007576 . A T 54 . DP=29;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,14,0,15;MQ=44;FQ=55.8;PV4=1,1.4e-10,1,0.26 GT:PL:GQ 0/1:84,0,89:86 chr2 107107511 . C T 222 . DP=64;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,36,25;MQ=53;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr2 107107567 . G C 189 . DP=62;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,31,26;MQ=47;FQ=-199 GT:PL:GQ 1/1:222,172,0:99 chr2 107107694 . A G 127 . DP=36;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,7,26;MQ=30;FQ=-126 GT:PL:GQ 1/1:160,99,0:99 chr2 107107765 . C A 151 . DP=11;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,11;MQ=48;FQ=-60 GT:PL:GQ 1/1:184,33,0:63 chr2 107118896 . T C 30.5 . DP=4;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,4,0;MQ=28;FQ=-39 GT:PL:GQ 1/1:63,12,0:21 chr2 107119136 . G C 36.8 . DP=4;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:68,6,0:10 chr2 107121040 . taaaaaaaaa tAaaaaaaaaa 29.5 . INDEL;DP=44;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,31,10;MQ=37;FQ=-158 GT:PL:GQ 1/1:70,123,0:99 chr2 107423128 . C T 108 . DP=41;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,5,13,6;MQ=59;FQ=111;PV4=0.73,3.1e-19,0.14,0.053 GT:PL:GQ 0/1:138,0,255:99 chr2 107423395 . T G 176 . DP=88;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,18,22,22;MQ=60;FQ=179;PV4=0.53,1.5e-25,1,1 GT:PL:GQ 0/1:206,0,255:99 chr2 107446430 . T C 85 . DP=12;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,11,1;MQ=58;FQ=-63 GT:PL:GQ 1/1:118,36,0:69 chr2 107450390 . C T 62 . DP=9;VDB=0.0042;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=60.9;PV4=1,1,1,1 GT:PL:GQ 0/1:92,0,90:91 chr2 107450589 . C T 136 . DP=80;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,27,11,20;MQ=60;FQ=139;PV4=0.81,1.5e-18,1,1 GT:PL:GQ 0/1:166,0,255:99 chr2 107459974 . C T 121 . DP=57;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,13,13,16;MQ=60;FQ=124;PV4=1,6.1e-21,1,0.44 GT:PL:GQ 0/1:151,0,255:99 chr2 108863650 . A C 79 . DP=44;VDB=0.0066;AF1=1;AC1=2;DP4=0,1,32,7;MQ=60;FQ=-109;PV4=0.2,1.9e-09,1,0.24 GT:PL:GQ 1/1:112,82,0:99 chr2 108863767 . A C 222 . DP=75;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,28,44;MQ=60;FQ=-206;PV4=1,0.12,0.45,0.25 GT:PL:GQ 1/1:255,179,0:99 chr2 108875464 . AAAACTTGGTCAGGTGATGTTATAAAC AAAAC 214 . INDEL;DP=89;VDB=0.0298;AF1=1;AC1=2;DP4=0,1,10,34;MQ=30;FQ=-110;PV4=1,0.42,0,0.39 GT:PL:GQ 1/1:255,75,0:99 chr2 108876948 . C T 3.98 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr2 108877062 . T A 189 . DP=78;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,58,12;MQ=59;FQ=-238 GT:PL:GQ 1/1:222,211,0:99 chr2 108994808 . C G 225 . DP=103;VDB=0.0322;AF1=0.5;AC1=1;DP4=35,21,30,16;MQ=59;FQ=225;PV4=0.84,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 108999786 . T C 145 . DP=54;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,13,14,11;MQ=60;FQ=148;PV4=0.79,2.6e-25,1,0.45 GT:PL:GQ 0/1:175,0,255:99 chr2 109003761 . A G 225 . DP=34;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,7,10,7;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 109099572 . C G 109 . DP=9;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,3,6;MQ=60;FQ=-54 GT:PL:GQ 1/1:142,27,0:51 chr2 109292280 . T C 202 . DP=47;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,38,9;MQ=58;FQ=-168 GT:PL:GQ 1/1:235,141,0:99 chr2 109336018 . C T 13.9 . DP=2;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr2 109381438 . A G 119 . DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,19,14,12;MQ=60;FQ=122;PV4=0.61,1.6e-21,1,0.46 GT:PL:GQ 0/1:149,0,255:99 chr2 109388846 . G A 159 . DP=17;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,8,7;MQ=60;FQ=-72 GT:PL:GQ 1/1:192,45,0:87 chr2 109389124 . A T 22 . DP=3;VDB=0.0156;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:54,9,0:15 chr2 109389463 . G A 174 . DP=56;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,41;MQ=60;FQ=-187 GT:PL:GQ 1/1:207,160,0:99 chr2 109393522 . TGGGG TGGG 114 . INDEL;DP=12;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,10,2;MQ=60;FQ=-70.5 GT:PL:GQ 1/1:155,36,0:69 chr2 109408159 . G T 93 . DP=13;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,2,6,3;MQ=60;FQ=76;PV4=1,9.3e-07,1,1 GT:PL:GQ 0/1:123,0,103:99 chr2 109408208 . G A 85 . DP=9;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,2,7;MQ=60;FQ=-54 GT:PL:GQ 1/1:118,27,0:51 chr2 109421334 . TCTCCTCCT TCTCCT 217 . INDEL;DP=23;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,3,6,5;MQ=59;FQ=217;PV4=0.66,0.0001,0.18,1 GT:PL:GQ 0/1:255,0,255:99 chr2 109490104 . A G 20 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:52,9,0:15 chr2 109513321 . C A 93 . DP=16;VDB=0.0118;AF1=0.5;AC1=1;DP4=10,0,6,0;MQ=60;FQ=96;PV4=1,1,1,1 GT:PL:GQ 0/1:123,0,157:99 chr2 109526969 . G A 123 . DP=39;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,13,9,7;MQ=60;FQ=126;PV4=0.31,6.2e-11,1,1 GT:PL:GQ 0/1:153,0,255:99 chr2 109527373 . A G 94 . DP=35;VDB=0.0298;AF1=0.5;AC1=1;DP4=14,6,10,5;MQ=60;FQ=97;PV4=1,5.3e-07,1,1 GT:PL:GQ 0/1:124,0,255:99 chr2 109539774 . G A 100 . DP=29;VDB=0.0190;AF1=0.5;AC1=1;DP4=9,4,9,5;MQ=60;FQ=103;PV4=1,8.8e-10,1,1 GT:PL:GQ 0/1:130,0,234:99 chr2 109539913 . C T 183 . DP=29;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,12,3,9;MQ=60;FQ=186;PV4=1,1,1,0.32 GT:PL:GQ 0/1:213,0,255:99 chr2 109746039 . G A 69 . DP=7;VDB=0.0199;AF1=0.5;AC1=1;DP4=2,1,3,1;MQ=60;FQ=49;PV4=1,0.37,1,0.22 GT:PL:GQ 0/1:99,0,76:79 chr2 109758196 . C T 11.3 . DP=11;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,6,1,4;MQ=60;FQ=14.2;PV4=0.45,8.5e-07,1,1 GT:PL:GQ 0/1:41,0,127:43 chr2 109929958 . A G 37 . DP=10;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,0,3,2;MQ=60;FQ=40;PV4=0.44,7.6e-05,1,0.2 GT:PL:GQ 0/1:67,0,86:70 chr2 109988215 . C G 27 . DP=6;VDB=0.0192;AF1=0.5;AC1=1;DP4=0,4,0,2;MQ=60;FQ=30;PV4=1,1,1,1 GT:PL:GQ 0/1:57,0,104:60 chr2 110049187 . G A 84 . DP=13;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,7,1,4;MQ=60;FQ=87;PV4=0.42,0.21,1,1 GT:PL:GQ 0/1:114,0,137:99 chr2 110322236 . A T 25 . DP=6;VDB=0.0002;AF1=0.5013;AC1=1;DP4=0,1,0,5;MQ=60;FQ=-5.45;PV4=1,0.00018,1,0.13 GT:PL:GQ 0/1:55,0,23:26 chr2 110332130 . G C 59 . DP=19;VDB=0.0004;AF1=0.5;AC1=1;DP4=8,1,9,0;MQ=59;FQ=62;PV4=1,6.9e-08,1,0.047 GT:PL:GQ 0/1:89,0,169:92 chr2 110372192 . A G 48.3 . DP=6;VDB=0.0263;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:81,15,0:27 chr2 110855123 . G T 222 . DP=73;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,38,35;MQ=60;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr2 111058854 . G A 128 . DP=12;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,6,6;MQ=28;FQ=-63 GT:PL:GQ 1/1:161,36,0:69 chr2 111406724 . Tcacacacacacacacacacacac TCAcacacacacacacacacacacac,TCACACAcacacacacacacacacacacac 111 . INDEL;DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,5,0;MQ=55;FQ=-46.5 GT:PL:GQ 1/1:165,26,14,146,0,143:21 chr2 111721142 . Atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt Atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 113 . INDEL;DP=30;VDB=0.0042;AF1=0.5;AC1=1;DP4=16,0,12,1;MQ=50;FQ=116;PV4=0.45,0.028,1e-13,1 GT:PL:GQ 0/1:151,0,255:99 chr2 111744658 . C T 183 . DP=80;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,11,27,21;MQ=60;FQ=186;PV4=0.49,2.5e-31,0.21,1 GT:PL:GQ 0/1:213,0,255:99 chr2 111753449 . G C 135 . DP=85;VDB=0.0365;AF1=0.5;AC1=1;DP4=42,7,25,9;MQ=59;FQ=138;PV4=0.26,3.4e-22,1,1 GT:PL:GQ 0/1:165,0,255:99 chr2 111789092 . G A 166 . DP=29;VDB=0.0053;AF1=0.5;AC1=1;DP4=13,0,12,1;MQ=60;FQ=143;PV4=1,1,1,0.47 GT:PL:GQ 0/1:196,0,170:99 chr2 111851212 . C T 112 . DP=21;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,10,0,9;MQ=60;FQ=115;PV4=1,0.072,1,0.31 GT:PL:GQ 0/1:142,0,161:99 chr2 111907691 . T C 79 . DP=32;VDB=0.0271;AF1=0.5;AC1=1;DP4=18,2,9,2;MQ=60;FQ=82;PV4=0.6,1.7e-10,1,1 GT:PL:GQ 0/1:109,0,231:99 chr2 112536264 . G T 56 . DP=13;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,12,0;MQ=18;FQ=-63 GT:PL:GQ 1/1:89,36,0:69 chr2 112582523 . G A 100 . DP=40;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,7,14,8;MQ=53;FQ=103;PV4=1,4.2e-21,0.18,1 GT:PL:GQ 0/1:130,0,255:99 chr2 112605302 . C T 26 . DP=53;VDB=0.0216;AF1=0.5;AC1=1;DP4=22,14,15,1;MQ=47;FQ=29;PV4=0.021,3.4e-23,1e-09,0.091 GT:PL:GQ 0/1:56,0,255:59 chr2 112605465 . T C 222 . DP=28;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,23;MQ=53;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr2 112615933 . T C 32 . DP=58;VDB=0.0164;AF1=0.5;AC1=1;DP4=15,34,3,5;MQ=53;FQ=35;PV4=0.7,1,0.41,1 GT:PL:GQ 0/1:62,0,255:65 chr2 112625575 . T C 80 . DP=18;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,6,6,2;MQ=60;FQ=83;PV4=0.15,0.00022,1,1 GT:PL:GQ 0/1:110,0,190:99 chr2 112641256 . G A 53 . DP=23;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,12;MQ=58;FQ=-63 GT:PL:GQ 1/1:86,36,0:69 chr2 112641283 . A G 62 . DP=12;VDB=0.0070;AF1=0.5;AC1=1;DP4=0,8,0,4;MQ=60;FQ=65;PV4=1,1,1,1 GT:PL:GQ 0/1:92,0,145:95 chr2 112686988 . G A 149 . DP=105;VDB=0.0365;AF1=0.5;AC1=1;DP4=33,21,33,18;MQ=60;FQ=152;PV4=0.84,6.2e-49,0.48,0.4 GT:PL:GQ 0/1:179,0,255:99 chr2 112702647 . C T 225 . DP=167;VDB=0.0298;AF1=0.5;AC1=1;DP4=40,40,35,49;MQ=59;FQ=225;PV4=0.35,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 112705157 . T C 12.3 . DP=8;VDB=0.0141;AF1=0.5;AC1=1;DP4=1,4,0,3;MQ=57;FQ=15.1;PV4=1,0.0032,1,0.35 GT:PL:GQ 0/1:42,0,122:44 chr2 112725684 . atgtgtgtgtgtgtgt aTGTGTGtgtgtgtgtgtgtgt 143 . INDEL;DP=32;VDB=0.0081;AF1=0.5;AC1=1;DP4=16,1,11,4;MQ=50;FQ=146;PV4=0.16,1,1.5e-11,1 GT:PL:GQ 0/1:181,0,255:99 chr2 112740373 . G A 26 . DP=3;VDB=0.0125;AF1=0.5003;AC1=1;DP4=1,0,2,0;MQ=60;FQ=4.13;PV4=1,0.27,1,1 GT:PL:GQ 0/1:56,0,29:32 chr2 112751928 . G A 28 . DP=37;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,13,4,6;MQ=59;FQ=31;PV4=0.71,5.8e-12,1,0.23 GT:PL:GQ 0/1:58,0,255:61 chr2 112752880 . G A 127 . DP=65;VDB=0.0322;AF1=0.5;AC1=1;DP4=20,11,22,12;MQ=59;FQ=130;PV4=1,1.3e-31,0.088,1 GT:PL:GQ 0/1:157,0,255:99 chr2 112753097 . A C 137 . DP=127;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,45,16,42;MQ=60;FQ=140;PV4=0.7,1.5e-38,1,1 GT:PL:GQ 0/1:167,0,255:99 chr2 112753781 . taaa taa 217 . INDEL;DP=83;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,19,12,29;MQ=59;FQ=217;PV4=0.043,1.7e-07,0.29,0.27 GT:PL:GQ 0/1:255,0,255:99 chr2 112753950 . G A 13.9 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr2 112754880 . G A 116 . DP=49;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,5,19,4;MQ=60;FQ=119;PV4=1,3.6e-15,1,1 GT:PL:GQ 0/1:146,0,255:99 chr2 112754943 . C T 225 . DP=68;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,11,23,15;MQ=60;FQ=225;PV4=1,0.23,1,0.3 GT:PL:GQ 0/1:255,0,255:99 chr2 112755001 . A G 166 . DP=79;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,22,14,27;MQ=60;FQ=169;PV4=0.5,5.2e-19,0.17,1 GT:PL:GQ 0/1:196,0,255:99 chr2 112761644 . A G 57 . DP=44;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,20,0,20;MQ=59;FQ=60;PV4=0.24,2.8e-19,1,1 GT:PL:GQ 0/1:87,0,254:90 chr2 112761653 . C G 30 . DP=34;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,16,0,14;MQ=60;FQ=33;PV4=1,2.2e-13,1,0.35 GT:PL:GQ 0/1:60,0,211:63 chr2 112765973 . A G 202 . DP=27;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,2,6,6;MQ=59;FQ=178;PV4=0.09,1,1,1 GT:PL:GQ 0/1:232,0,205:99 chr2 112766262 . A G 126 . DP=83;VDB=0.0398;AF1=0.5;AC1=1;DP4=22,22,25,11;MQ=59;FQ=129;PV4=0.11,5.4e-34,0.058,0.23 GT:PL:GQ 0/1:156,0,255:99 chr2 112770770 . A G 191 . DP=14;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,0,7,4;MQ=60;FQ=22;PV4=0.51,1,1,0.1 GT:PL:GQ 0/1:221,0,49:52 chr2 112770798 . T C 136 . DP=19;VDB=0.0359;AF1=0.5;AC1=1;DP4=4,1,7,5;MQ=60;FQ=68;PV4=0.6,0.0044,1,1 GT:PL:GQ 0/1:166,0,95:98 chr2 112773366 . A G 126 . DP=11;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,3,4,2;MQ=58;FQ=102;PV4=0.57,1,0.19,1 GT:PL:GQ 0/1:156,0,129:99 chr2 112773528 . tcttgtacctt tctt 19.5 . INDEL;DP=27;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,13,1,4;MQ=55;FQ=22.5;PV4=1,1.5e-20,0,1 GT:PL:GQ 0/1:57,0,255:60 chr2 112779286 . ATCTCT ATCTCTCT 114 . INDEL;DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,4;MQ=54;FQ=-46.5 GT:PL:GQ 1/1:154,12,0:21 chr2 112813391 . C G 185 . DP=26;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,9,16;MQ=60;FQ=-102 GT:PL:GQ 1/1:218,75,0:99 chr2 112832535 . CAAT C 113 . INDEL;DP=14;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,2,3,1;MQ=58;FQ=116;PV4=1,3.6e-12,0.058,0.48 GT:PL:GQ 0/1:151,0,255:99 chr2 112832684 . G A 72 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:104,9,0:16 chr2 112843565 . ATTTTTTT ATTTTTT 30.5 . INDEL;DP=28;VDB=0.0399;AF1=0.5003;AC1=1;DP4=8,2,11,6;MQ=59;FQ=-6.6;PV4=0.67,0.42,1,0.23 GT:PL:GQ 0/1:68,0,29:32 chr2 112847164 . C T 115 . DP=107;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,21,24,31;MQ=60;FQ=118;PV4=0.24,5.5e-39,1,1 GT:PL:GQ 0/1:145,0,255:99 chr2 112856165 . C A 222 . DP=62;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,40,18;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr2 112865517 . G C 196 . DP=24;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,15;MQ=60;FQ=-96 GT:PL:GQ 1/1:229,69,0:99 chr2 112917102 . G C 11.3 . DP=9;VDB=0.0011;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=14.2;PV4=1,0.00015,1,1 GT:PL:GQ 0/1:41,0,96:43 chr2 112945188 . T A 145 . DP=11;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:178,30,0:57 chr2 113305150 . G C 225 . DP=99;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,32,7,50;MQ=60;FQ=225;PV4=0.76,0.025,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 113308516 . T A 222 . DP=125;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,54,67;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 113308622 . C T 84 . DP=26;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,25;MQ=60;FQ=-102 GT:PL:GQ 1/1:117,75,0:99 chr2 113309473 . C T 154 . DP=120;VDB=0.0399;AF1=0.5;AC1=1;DP4=32,24,36,25;MQ=59;FQ=157;PV4=0.85,3.3e-49,0.047,0.24 GT:PL:GQ 0/1:184,0,255:99 chr2 113309653 . C A 90 . DP=18;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,11,0,7;MQ=60;FQ=93;PV4=1,0.41,1,1 GT:PL:GQ 0/1:120,0,159:99 chr2 113321900 . T C 128 . DP=12;VDB=0.0118;AF1=0.5;AC1=1;DP4=5,0,6,1;MQ=58;FQ=80;PV4=1,1,1,0.41 GT:PL:GQ 0/1:158,0,107:99 chr2 113326281 . C G 52.1 . DP=7;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:85,18,0:33 chr2 113326502 . C T 222 . DP=61;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,42;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr2 113344047 . T C 222 . DP=98;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,35,60;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 113346480 . G A 46 . DP=12;VDB=0.0373;AF1=0.5;AC1=1;DP4=2,4,6,0;MQ=60;FQ=49;PV4=0.061,0.00016,1,0.036 GT:PL:GQ 0/1:76,0,148:79 chr2 113346512 . A C 94 . DP=13;VDB=0.0219;AF1=1;AC1=2;DP4=0,0,5,4;MQ=60;FQ=-54 GT:PL:GQ 1/1:127,27,0:51 chr2 113404708 . G A 225 . DP=35;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,12,5,13;MQ=59;FQ=225;PV4=1,0.36,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr2 113418939 . G C 102 . DP=5;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:135,15,0:27 chr2 113479614 . G A 225 . DP=74;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,13,23,20;MQ=59;FQ=225;PV4=0.81,0.13,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr2 113479745 . ACCCCCC ACCCCC 140 . INDEL;DP=39;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,12,24;MQ=60;FQ=-143 GT:PL:GQ 1/1:181,108,0:99 chr2 113481439 . T A 225 . DP=54;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,18,7,19;MQ=59;FQ=225;PV4=0.77,0.089,0.27,1 GT:PL:GQ 0/1:255,0,255:99 chr2 113481547 . A G 177 . DP=37;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,22,14;MQ=60;FQ=-135 GT:PL:GQ 1/1:210,108,0:99 chr2 113482779 . A C 222 . DP=91;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,51,38;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 113484319 . G A 220 . DP=61;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,38;MQ=60;FQ=-208 GT:PL:GQ 1/1:253,181,0:99 chr2 113484353 . A G 148 . DP=45;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,39;MQ=59;FQ=-162 GT:PL:GQ 1/1:181,135,0:99 chr2 113498566 . A G 54 . DP=29;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,17,3,7;MQ=60;FQ=57;PV4=0.12,1.8e-16,1,0.09 GT:PL:GQ 0/1:84,0,223:87 chr2 113513825 . T C 225 . DP=201;VDB=0.0399;AF1=0.5;AC1=1;DP4=52,59,45,42;MQ=59;FQ=225;PV4=0.57,0.0074,1,0.18 GT:PL:GQ 0/1:255,0,255:99 chr2 113514159 . T A 225 . DP=118;VDB=0.0345;AF1=0.5;AC1=1;DP4=41,24,30,21;MQ=60;FQ=225;PV4=0.7,0.044,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 113514180 . T C 109 . DP=117;VDB=0.0399;AF1=0.5;AC1=1;DP4=40,24,31,20;MQ=60;FQ=112;PV4=1,1.9e-47,1,0.14 GT:PL:GQ 0/1:139,0,255:99 chr2 113514763 . T C 50 . DP=39;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,18,0,15;MQ=60;FQ=53;PV4=0.25,1.2e-17,1,0.34 GT:PL:GQ 0/1:80,0,255:83 chr2 113532885 . G T 144 . DP=40;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,29;MQ=59;FQ=-144 GT:PL:GQ 1/1:177,117,0:99 chr2 113535395 . G T 13.9 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr2 113535438 . C T 98 . DP=20;VDB=0.0053;AF1=0.5;AC1=1;DP4=7,0,9,1;MQ=57;FQ=95.6;PV4=1,0.011,0.12,0.18 GT:PL:GQ 0/1:128,0,124:99 chr2 113537223 . C A 225 . DP=50;VDB=0.0164;AF1=0.5;AC1=1;DP4=3,19,3,23;MQ=60;FQ=225;PV4=1,0.33,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 113540177 . C T 52 . DP=33;VDB=0.0081;AF1=0.5;AC1=1;DP4=14,2,16,0;MQ=60;FQ=55;PV4=0.48,4.8e-15,1,0.41 GT:PL:GQ 0/1:82,0,228:85 chr2 113540205 . G T 132 . DP=50;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,45,3;MQ=60;FQ=-171 GT:PL:GQ 1/1:165,144,0:99 chr2 113588793 . C T 30 . DP=8;VDB=0.0140;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=60;FQ=33;PV4=1,0.0061,1,0.17 GT:PL:GQ 0/1:60,0,82:63 chr2 113590390 . G A 85 . DP=56;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,16,6,16;MQ=59;FQ=88;PV4=0.098,1.6e-17,1,1 GT:PL:GQ 0/1:115,0,255:99 chr2 113590467 . C T 186 . DP=25;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,10,3,11;MQ=58;FQ=122;PV4=0.24,0.14,1,0.12 GT:PL:GQ 0/1:216,0,149:99 chr2 113671303 . T C 160 . DP=120;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,78,39;MQ=60;FQ=-282 GT:PL:GQ 1/1:193,255,0:99 chr2 113671378 . G T 222 . DP=107;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,61,40;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 113671410 . A G 222 . DP=87;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,32,49;MQ=59;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr2 113671518 . G A 44.3 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:77,15,0:27 chr2 113785727 . A G 164 . DP=31;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,7,23;MQ=59;FQ=-117 GT:PL:GQ 1/1:197,90,0:99 chr2 113789316 . C T 225 . DP=38;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,14,5,12;MQ=60;FQ=225;PV4=1,1,1,0.32 GT:PL:GQ 0/1:255,0,255:99 chr2 113818632 . G A 41 . DP=19;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,6,1,12;MQ=60;FQ=44;PV4=1,6.8e-13,1,1 GT:PL:GQ 0/1:71,0,114:74 chr2 113819614 . T C 147 . DP=28;VDB=0.0118;AF1=0.5;AC1=1;DP4=6,0,15,6;MQ=60;FQ=51;PV4=0.28,1.4e-05,1,1 GT:PL:GQ 0/1:177,0,78:81 chr2 113831945 . T C 225 . DP=30;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,11,7,7;MQ=60;FQ=225;PV4=0.26,0.44,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 113832333 . C A 59 . DP=19;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,8,2,5;MQ=60;FQ=62;PV4=1,0.00025,1,1 GT:PL:GQ 0/1:89,0,213:92 chr2 113875509 . G A 112 . DP=11;VDB=0.0053;AF1=0.5;AC1=1;DP4=3,0,7,0;MQ=60;FQ=46;PV4=1,0.27,1,1 GT:PL:GQ 0/1:142,0,73:76 chr2 113875565 . A G 88 . DP=36;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,2,14,2;MQ=60;FQ=91;PV4=1,1.7e-16,1,1 GT:PL:GQ 0/1:118,0,235:99 chr2 113875584 . G C 214 . DP=44;VDB=0.0322;AF1=0.5;AC1=1;DP4=21,5,15,3;MQ=60;FQ=217;PV4=1,1,1,1 GT:PL:GQ 0/1:244,0,255:99 chr2 113875631 . T C 16.1 . DP=68;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,13,7,11;MQ=60;FQ=19.1;PV4=0.082,1.3e-19,1,1 GT:PL:GQ 0/1:46,0,255:49 chr2 113875753 . C G 201 . DP=30;VDB=0.0140;AF1=0.5;AC1=1;DP4=5,12,5,8;MQ=59;FQ=204;PV4=0.71,0.2,0.13,1 GT:PL:GQ 0/1:231,0,255:99 chr2 113875773 . A G 122 . DP=15;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,7,2,4;MQ=60;FQ=125;PV4=0.54,1,1,1 GT:PL:GQ 0/1:152,0,167:99 chr2 113877495 . G T 147 . DP=13;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,10,3;MQ=60;FQ=-66 GT:PL:GQ 1/1:180,39,0:75 chr2 113877538 . G C 62 . DP=17;VDB=0.0373;AF1=0.5;AC1=1;DP4=8,3,5,0;MQ=60;FQ=65;PV4=0.51,0.065,1,0.23 GT:PL:GQ 0/1:92,0,239:95 chr2 113877713 . A C 160 . DP=24;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,9,1,11;MQ=60;FQ=163;PV4=0.59,0.18,1,1 GT:PL:GQ 0/1:190,0,235:99 chr2 113887207 . T C 172 . DP=139;VDB=0.0345;AF1=0.5;AC1=1;DP4=30,42,30,34;MQ=59;FQ=175;PV4=0.61,6.1e-50,0.45,1 GT:PL:GQ 0/1:202,0,255:99 chr2 113887262 . C T 148 . DP=100;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,43,7,36;MQ=59;FQ=151;PV4=0.46,2e-25,0.39,1 GT:PL:GQ 0/1:178,0,255:99 chr2 113887273 . G A 107 . DP=86;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,37,5,35;MQ=59;FQ=110;PV4=0.76,2.6e-32,0.46,0.056 GT:PL:GQ 0/1:137,0,255:99 chr2 113887294 . G C 61 . DP=59;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,32,3,21;MQ=59;FQ=64;PV4=0.68,1.2e-27,0.39,0.34 GT:PL:GQ 0/1:91,0,255:94 chr2 113887338 . A C 17.1 . DP=25;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,13,0,10;MQ=59;FQ=20.1;PV4=1,8.5e-17,0.13,1 GT:PL:GQ 0/1:47,0,174:50 chr2 113888557 . G A 38 . DP=17;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,1,7,2;MQ=59;FQ=41;PV4=1,9.3e-08,0.2,1 GT:PL:GQ 0/1:68,0,138:71 chr2 113888579 . T C 78 . DP=26;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,1,12,3;MQ=58;FQ=81;PV4=0.61,3.3e-14,1,0.43 GT:PL:GQ 0/1:108,0,180:99 chr2 113888793 . A T 132 . DP=83;VDB=0.0399;AF1=0.5;AC1=1;DP4=20,19,14,27;MQ=59;FQ=135;PV4=0.17,1.2e-30,1,1 GT:PL:GQ 0/1:162,0,255:99 chr2 113888900 . T A 169 . DP=10;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:202,27,0:51 chr2 113953401 . A G 222 . DP=82;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,36,44;MQ=59;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr2 113953657 . A C 225 . DP=87;VDB=0.0216;AF1=0.5;AC1=1;DP4=30,5,36,13;MQ=60;FQ=225;PV4=0.28,1,0.2,1 GT:PL:GQ 0/1:255,0,255:99 chr2 113953952 . T C 35 . DP=9;VDB=0.0041;AF1=0.5;AC1=1;DP4=0,5,1,2;MQ=57;FQ=38;PV4=0.37,0.058,0.11,0.17 GT:PL:GQ 0/1:65,0,124:68 chr2 113955074 . G A 225 . DP=40;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,3,16,6;MQ=60;FQ=192;PV4=0.71,1,1,0.21 GT:PL:GQ 0/1:255,0,219:99 chr2 113956371 . G C 154 . DP=49;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,9,16,9;MQ=60;FQ=157;PV4=0.77,2.9e-07,1,0.33 GT:PL:GQ 0/1:184,0,255:99 chr2 113956821 . C G 8.64 . DP=7;VDB=0.0187;AF1=0.5;AC1=1;DP4=2,2,0,3;MQ=60;FQ=11.3;PV4=0.43,0.15,1,0.36 GT:PL:GQ 0/1:38,0,91:40 chr2 113994417 . G T 118 . DP=26;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,13,0,13;MQ=59;FQ=121;PV4=1,0.0092,0.16,0.46 GT:PL:GQ 0/1:148,0,166:99 chr2 114000458 . C A 54 . DP=10;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,9;MQ=60;FQ=-57 GT:PL:GQ 1/1:87,30,0:57 chr2 114035923 . A G 121 . DP=121;VDB=0.0380;AF1=0.5;AC1=1;DP4=41,17,39,19;MQ=60;FQ=124;PV4=0.84,1.4e-20,1,0.15 GT:PL:GQ 0/1:151,0,255:99 chr2 114220055 . T C 140 . DP=27;VDB=0.0400;AF1=1;AC1=2;DP4=0,1,3,21;MQ=55;FQ=-80;PV4=1,0.00015,1,1 GT:PL:GQ 1/1:173,53,0:99 chr2 114426090 . C T 100 . DP=47;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,8,15,8;MQ=50;FQ=103;PV4=1,2.7e-22,0.36,1 GT:PL:GQ 0/1:130,0,255:99 chr2 114429542 . G A 107 . DP=42;VDB=0.0164;AF1=0.5;AC1=1;DP4=9,11,12,9;MQ=60;FQ=110;PV4=0.54,9.1e-18,1,1 GT:PL:GQ 0/1:137,0,255:99 chr2 114429576 . T C 158 . DP=52;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,18,9,16;MQ=60;FQ=161;PV4=1,3.3e-17,1,0.26 GT:PL:GQ 0/1:188,0,255:99 chr2 114486907 . T C 21 . DP=4;VDB=0.0060;AF1=0.5008;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-4.12;PV4=1,0.018,1,1 GT:PL:GQ 0/1:51,0,25:28 chr2 114492135 . C T 179 . DP=16;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,3,6,4;MQ=60;FQ=105;PV4=0.61,0.041,1,0.35 GT:PL:GQ 0/1:209,0,132:99 chr2 114493315 . C A 18.1 . DP=7;VDB=0.0011;AF1=0.5;AC1=1;DP4=2,1,3,1;MQ=60;FQ=21;PV4=1,0.00085,1,0.0061 GT:PL:GQ 0/1:48,0,89:51 chr2 114493509 . CTTTTTT CTTTTT 20.5 . INDEL;DP=24;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,10,1,10;MQ=60;FQ=20.5;PV4=1,0.49,1,0.16 GT:PL:GQ 0/1:58,0,58:58 chr2 114493524 . C T 37 . DP=21;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,10,1,9;MQ=60;FQ=40;PV4=1,7e-09,1,0.49 GT:PL:GQ 0/1:67,0,174:70 chr2 114501112 . C T 34 . DP=3;VDB=0.0190;AF1=0.5002;AC1=1;DP4=1,0,2,0;MQ=60;FQ=6.2;PV4=1,0.17,1,1 GT:PL:GQ 0/1:64,0,32:35 chr2 114513386 . C T 93 . DP=38;VDB=0.0244;AF1=0.5;AC1=1;DP4=19,4,12,3;MQ=60;FQ=96;PV4=1,2.1e-16,1,0.35 GT:PL:GQ 0/1:123,0,255:99 chr2 114513787 . C G 131 . DP=29;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,19,6;MQ=60;FQ=-102 GT:PL:GQ 1/1:164,75,0:99 chr2 114513901 . C T 149 . DP=43;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,13,9,13;MQ=59;FQ=152;PV4=0.75,2e-12,0.18,1 GT:PL:GQ 0/1:179,0,255:99 chr2 114670966 . CTATT C 6.55 . INDEL;DP=4;VDB=0.0049;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=54;FQ=9.05;PV4=1,0.046,0.21,0.21 GT:PL:GQ 0/1:43,0,98:44 chr2 114713169 . A G 213 . DP=80;VDB=0.0164;AF1=0.5;AC1=1;DP4=41,8,27,3;MQ=59;FQ=216;PV4=0.52,0.21,1,1 GT:PL:GQ 0/1:243,0,255:99 chr2 114713188 . G A 225 . DP=102;VDB=0.0322;AF1=0.5;AC1=1;DP4=44,15,31,11;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 115822241 . G C 88 . DP=32;VDB=0.0216;AF1=0.5;AC1=1;DP4=18,0,11,2;MQ=59;FQ=91;PV4=0.17,1.9e-12,0.12,1 GT:PL:GQ 0/1:118,0,179:99 chr2 115822286 . T G 122 . DP=56;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,6,25,4;MQ=59;FQ=125;PV4=0.48,4.3e-13,1,1 GT:PL:GQ 0/1:152,0,255:99 chr2 116066984 . G A 80 . DP=29;VDB=0.0014;AF1=0.5;AC1=1;DP4=2,19,0,8;MQ=59;FQ=83;PV4=1,0.1,1,1 GT:PL:GQ 0/1:110,0,244:99 chr2 116099725 . A T 138 . DP=49;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,8,37;MQ=59;FQ=-162 GT:PL:GQ 1/1:171,135,0:99 chr2 116283668 . G A 22 . DP=32;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,15,1,11;MQ=58;FQ=25;PV4=0.62,8.7e-12,1,1 GT:PL:GQ 0/1:52,0,255:55 chr2 116497479 . A G 222 . DP=51;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,4,46;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr2 116497528 . A G 101 . DP=17;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,1,15;MQ=60;FQ=-75 GT:PL:GQ 1/1:134,48,0:93 chr2 116510817 . G C 139 . DP=43;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,13,6,12;MQ=60;FQ=142;PV4=0.75,1.1e-12,1,0.25 GT:PL:GQ 0/1:169,0,255:99 chr2 116525960 . G A 222 . DP=74;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,29,41;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr2 116534922 . A G 86 . DP=48;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,27,5,14;MQ=60;FQ=89;PV4=0.097,1e-16,1,1 GT:PL:GQ 0/1:116,0,248:99 chr2 116548820 . C T 222 . DP=38;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,16,22;MQ=59;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr2 116594221 . G C 194 . DP=23;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,10,4,7;MQ=58;FQ=189;PV4=0.37,0.015,1,0.3 GT:PL:GQ 0/1:224,0,217:99 chr2 116599659 . A T 128 . DP=20;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,18,2;MQ=59;FQ=-87 GT:PL:GQ 1/1:161,60,0:99 chr2 116599927 . T C 204 . DP=69;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,8,60;MQ=60;FQ=-232 GT:PL:GQ 1/1:237,205,0:99 chr2 118572471 . A C 37 . DP=19;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,6,3,3;MQ=60;FQ=40;PV4=1,0.025,1,1 GT:PL:GQ 0/1:67,0,172:70 chr2 118583940 . C T 119 . DP=58;VDB=0.0365;AF1=0.5;AC1=1;DP4=25,10,16,6;MQ=60;FQ=122;PV4=1,3.8e-12,1,1 GT:PL:GQ 0/1:149,0,255:99 chr2 118688754 . T C 222 . DP=67;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,19,46;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr2 118704478 . T G 146 . DP=73;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,9,60;MQ=60;FQ=-235 GT:PL:GQ 1/1:179,208,0:99 chr2 118704503 . A G 112 . DP=51;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,49;MQ=60;FQ=-178 GT:PL:GQ 1/1:145,151,0:99 chr2 118705570 . A G 105 . DP=26;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,25,1;MQ=59;FQ=-105 GT:PL:GQ 1/1:138,78,0:99 chr2 118706879 . A G 222 . DP=75;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,36,39;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr2 118731573 . G A 222 . DP=59;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,36;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr2 118732975 . T C 24.5 . DP=4;VDB=0.0059;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:57,12,0:21 chr2 118735395 . G A 36.5 . DP=4;VDB=0.0027;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:69,12,0:21 chr2 118753148 . AT ATCT 214 . INDEL;DP=26;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,24;MQ=60;FQ=-110 GT:PL:GQ 1/1:255,75,0:99 chr2 118764242 . ca cAa 214 . INDEL;DP=34;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,26,8;MQ=60;FQ=-137 GT:PL:GQ 1/1:255,102,0:99 chr2 118766024 . A G 80 . DP=54;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,49,1;MQ=60;FQ=-178 GT:PL:GQ 1/1:113,151,0:99 chr2 118771663 . A G 222 . DP=22;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,14;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr2 118866033 . GA GAA 139 . INDEL;DP=17;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,8,1,7;MQ=60;FQ=86.5;PV4=1,1,1,1 GT:PL:GQ 0/1:177,0,121:99 chr2 119700096 . T C 71 . DP=11;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:104,27,0:51 chr2 119732042 . T C 222 . DP=36;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,14,18;MQ=60;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr2 119739269 . C T 222 . DP=20;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,12;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr2 119748135 . TCCCCCCCCCC TCCCCCCCCC,TCCCCCCCCCCCCC 34.5 . INDEL;DP=103;VDB=0.0365;AF1=1;AC1=2;DP4=7,0,21,33;MQ=58;FQ=-117;PV4=0.0027,1,1,1 GT:PL:GQ 1/1:75,82,0,63,108,62:99 chr2 119915132 . CGGGGG CGGGG 38.5 . INDEL;DP=7;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-55.5 GT:PL:GQ 1/1:79,21,0:39 chr2 119915249 . T C 222 . DP=54;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,30,19;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr2 119988512 . C G 225 . DP=64;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,7,21,15;MQ=60;FQ=225;PV4=0.29,1,1,0.33 GT:PL:GQ 0/1:255,0,255:99 chr2 120005838 . CCTC CC 217 . INDEL;DP=46;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,11,5,13;MQ=58;FQ=144;PV4=1,1,0.08,1 GT:PL:GQ 0/1:255,0,179:99 chr2 120012412 . C T 145 . DP=52;VDB=0.0384;AF1=0.5;AC1=1;DP4=9,12,10,18;MQ=60;FQ=148;PV4=0.77,6.7e-18,1,0.056 GT:PL:GQ 0/1:175,0,255:99 chr2 120015164 . A G 225 . DP=129;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,34,24,38;MQ=59;FQ=225;PV4=0.59,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 120059988 . T C 83 . DP=12;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:116,33,0:63 chr2 120060082 . T C 84 . DP=12;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,2,10;MQ=60;FQ=-63 GT:PL:GQ 1/1:117,36,0:69 chr2 120078778 . T C 141 . DP=8;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:174,24,0:45 chr2 120125029 . A G 202 . DP=30;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,17,11;MQ=60;FQ=-111 GT:PL:GQ 1/1:235,84,0:99 chr2 120125936 . T C 167 . DP=22;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,5,16;MQ=59;FQ=-90 GT:PL:GQ 1/1:200,63,0:99 chr2 120125973 . G C 52 . DP=16;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,6,1,7;MQ=60;FQ=55;PV4=1,8.9e-06,1,1 GT:PL:GQ 0/1:82,0,170:85 chr2 120187344 . A G 101 . DP=5;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:134,15,0:27 chr2 120194651 . A AGTGTGC 214 . INDEL;DP=35;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,11,19;MQ=38;FQ=-122 GT:PL:GQ 1/1:255,87,0:99 chr2 120197670 . G A 192 . DP=14;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,12,1;MQ=58;FQ=-66 GT:PL:GQ 1/1:225,39,0:75 chr2 120199140 . A G 222 . DP=101;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,34,63;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 120209689 . A G 166 . DP=55;VDB=0.0400;AF1=1;AC1=2;DP4=0,1,14,39;MQ=60;FQ=-149;PV4=1,4.1e-08,0.45,0.22 GT:PL:GQ 1/1:199,122,0:99 chr2 120221585 . G A 14.1 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:46,9,0:14 chr2 120221984 . A C 20 . DP=3;VDB=0.0107;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:52,9,0:15 chr2 120230998 . G A 168 . DP=26;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,20,6;MQ=60;FQ=-105 GT:PL:GQ 1/1:201,78,0:99 chr2 120231165 . T C 222 . DP=31;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,23;MQ=60;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr2 120231303 . T C 36.8 . DP=2;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:68,6,0:10 chr2 120303820 . A T 51 . DP=22;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,12,1,6;MQ=59;FQ=54;PV4=1,0.00017,0.081,0.34 GT:PL:GQ 0/1:81,0,221:84 chr2 120362407 . C T 222 . DP=64;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,26,37;MQ=59;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr2 120362897 . T A 222 . DP=24;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,2,22;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr2 120369300 . T C 222 . DP=86;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,40,44;MQ=60;FQ=-280 GT:PL:GQ 1/1:255,253,0:99 chr2 120388412 . G A 222 . DP=107;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,69;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 120404629 . ATTTTTTTTTTTTTT ATTTTTTTTTTTTT,ATTTTTTTTTTTT 21.5 . INDEL;DP=74;VDB=0.0400;AF1=1;AC1=2;DP4=1,0,16,31;MQ=60;FQ=-154;PV4=0.35,0.42,0.44,1 GT:PL:GQ 1/1:62,119,0,64,95,58:99 chr2 120409430 . A G 49.1 . DP=6;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:82,18,0:33 chr2 120414083 . C T 90 . DP=19;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81 GT:PL:GQ 1/1:123,54,0:99 chr2 120438523 . A G 222 . DP=71;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,39,27;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr2 120438696 . A G 222 . DP=126;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,63,56;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 120439230 . C G 189 . DP=89;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,47,37;MQ=59;FQ=-280 GT:PL:GQ 1/1:222,253,0:99 chr2 120443443 . A G 129 . DP=29;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,2,27;MQ=59;FQ=-114 GT:PL:GQ 1/1:162,87,0:99 chr2 120704164 . AT ATT 34.5 . INDEL;DP=19;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,9,0,4;MQ=60;FQ=37.5;PV4=1,1,1,1 GT:PL:GQ 0/1:72,0,191:75 chr2 120718322 . A G 32 . DP=4;VDB=0.0106;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=32;PV4=1,1,1,0.39 GT:PL:GQ 0/1:62,0,62:62 chr2 120830815 . A G 46 . DP=5;VDB=0.0225;AF1=0.5;AC1=1;DP4=0,2,1,2;MQ=60;FQ=31;PV4=1,0.19,1,0.17 GT:PL:GQ 0/1:76,0,58:61 chr2 120885310 . G A 128 . DP=60;VDB=0.0271;AF1=0.5;AC1=1;DP4=22,11,16,11;MQ=60;FQ=131;PV4=0.6,8.3e-22,1,1 GT:PL:GQ 0/1:158,0,255:99 chr2 120889173 . G C 91 . DP=46;VDB=0.0359;AF1=0.5;AC1=1;DP4=23,2,15,3;MQ=60;FQ=94;PV4=0.63,1.1e-13,1,0.33 GT:PL:GQ 0/1:121,0,230:99 chr2 120900736 . T C 225 . DP=51;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,12,7,18;MQ=60;FQ=225;PV4=0.23,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 120918585 . A C 81 . DP=42;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,14,2,20;MQ=59;FQ=84;PV4=0.64,1.6e-22,0.19,1 GT:PL:GQ 0/1:111,0,247:99 chr2 120980428 . G C 84 . DP=68;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,23,12,19;MQ=60;FQ=87;PV4=0.6,3.6e-25,0.15,0.4 GT:PL:GQ 0/1:114,0,255:99 chr2 121043403 . G A 16.1 . DP=8;VDB=0.0153;AF1=0.5;AC1=1;DP4=6,0,2,0;MQ=60;FQ=19.1;PV4=1,1,1,0.42 GT:PL:GQ 0/1:46,0,126:49 chr2 121713022 . C G 41 . DP=9;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:74,24,0:45 chr2 121713030 . G A 45.3 . DP=6;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:78,15,0:27 chr2 121713041 . T C 34.5 . DP=4;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:67,12,0:21 chr2 121726447 . G A 222 . DP=103;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,22,75;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 121729360 . T C 50 . DP=9;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:83,24,0:45 chr2 121729490 . C T 222 . DP=49;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,28,20;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr2 121729686 . T C 81 . DP=10;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,9;MQ=60;FQ=-57 GT:PL:GQ 1/1:114,30,0:57 chr2 121730138 . C G 113 . DP=6;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:146,18,0:33 chr2 121740190 . C T 32.5 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:65,12,0:21 chr2 121740194 . T G 17.3 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:50,15,0:25 chr2 121740505 . C T 222 . DP=13;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,4,8;MQ=60;FQ=-63 GT:PL:GQ 1/1:255,36,0:69 chr2 121744225 . A G 6.98 . DP=7;VDB=0.0380;AF1=0.4999;AC1=1;DP4=0,2,0,3;MQ=60;FQ=9.34;PV4=1,0.021,1,0.25 GT:PL:GQ 0/1:36,0,49:37 chr2 121746956 . G T 225 . DP=48;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,14,6,16;MQ=59;FQ=225;PV4=0.36,0.38,0.46,0.43 GT:PL:GQ 0/1:255,0,255:99 chr2 121747406 . G A 160 . DP=78;VDB=0.0398;AF1=0.5;AC1=1;DP4=19,23,19,14;MQ=60;FQ=163;PV4=0.35,3.3e-20,1,1 GT:PL:GQ 0/1:190,0,255:99 chr2 121747429 . A G 225 . DP=69;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,22,18,15;MQ=60;FQ=225;PV4=0.08,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 121982011 . T A 198 . DP=23;VDB=0.0164;AF1=0.5;AC1=1;DP4=3,8,3,9;MQ=58;FQ=169;PV4=1,1,1,1 GT:PL:GQ 0/1:228,0,196:99 chr2 121989489 . G A 175 . DP=84;VDB=0.0322;AF1=0.5;AC1=1;DP4=29,8,23,20;MQ=60;FQ=178;PV4=0.033,1.9e-14,1,1 GT:PL:GQ 0/1:205,0,255:99 chr2 121989657 . G A 22 . DP=18;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,11,0,6;MQ=60;FQ=25;PV4=1,7.6e-10,1,1 GT:PL:GQ 0/1:52,0,171:55 chr2 121995065 . G A 14.2 . DP=5;VDB=0.0004;AF1=0.5063;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-11.3;PV4=1,0.035,1,1 GT:PL:GQ 0/1:44,0,16:19 chr2 122004596 . C G 14.2 . DP=28;VDB=0.0099;AF1=0.5;AC1=1;DP4=3,13,1,7;MQ=60;FQ=17.1;PV4=1,1.5e-09,1,1 GT:PL:GQ 0/1:44,0,242:47 chr2 122006700 . G C 81 . DP=37;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,9,8,11;MQ=59;FQ=84;PV4=1,3.8e-16,1,1 GT:PL:GQ 0/1:111,0,229:99 chr2 125192068 . T C 222 . DP=52;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,23,26;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr2 125232609 . G T 123 . DP=8;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:156,21,0:39 chr2 125405302 . C T 225 . DP=59;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,13,17,10;MQ=60;FQ=225;PV4=0.79,1,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr2 127447763 . G A 11.3 . DP=12;VDB=0.0004;AF1=0.5;AC1=1;DP4=6,1,5,0;MQ=60;FQ=14.2;PV4=1,6.8e-08,1,1 GT:PL:GQ 0/1:41,0,159:43 chr2 127453479 . G A 7.8 . DP=4;VDB=0.0194;AF1=0.5;AC1=1;DP4=1,1,2,0;MQ=60;FQ=10.4;PV4=1,0.065,1,1 GT:PL:GQ 0/1:37,0,64:39 chr2 127453664 . A C 225 . DP=46;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,10,10,10;MQ=60;FQ=225;PV4=0.76,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 127657221 . C T 113 . DP=10;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,7,3;MQ=60;FQ=-57 GT:PL:GQ 1/1:146,30,0:57 chr2 127808226 . A T 204 . DP=37;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,10,7,6;MQ=59;FQ=207;PV4=1,1,0.35,1 GT:PL:GQ 0/1:234,0,255:99 chr2 127808532 . G A 30 . DP=8;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,3,1,4;MQ=60;FQ=32.5;PV4=1,0.00059,1,1 GT:PL:GQ 0/1:60,0,69:62 chr2 127808909 . G A 123 . DP=23;VDB=0.0164;AF1=0.5;AC1=1;DP4=5,6,5,7;MQ=60;FQ=126;PV4=1,4.1e-10,1,1 GT:PL:GQ 0/1:153,0,224:99 chr2 127811712 . gca gCAca 58.5 . INDEL;DP=5;VDB=0.0003;AF1=0.5;AC1=1;DP4=1,2,0,2;MQ=60;FQ=61.5;PV4=1,1,1,0.36 GT:PL:GQ 0/1:96,0,129:99 chr2 127816632 . G A 113 . DP=30;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,7,10,3;MQ=59;FQ=116;PV4=0.43,0.041,0.14,1 GT:PL:GQ 0/1:143,0,230:99 chr2 127816846 . Ctgtgtgtgtgtgtgtgtgtgtgt Ctgtgtgtgtgtgtgtgtgtgt 96.5 . INDEL;DP=17;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,2,1,3;MQ=60;FQ=95.4;PV4=1,1.1e-06,1,1 GT:PL:GQ 0/1:134,0,132:99 chr2 127821452 . C T 97 . DP=33;VDB=0.0216;AF1=0.5;AC1=1;DP4=15,4,12,2;MQ=59;FQ=100;PV4=1,6.5e-11,1,0.49 GT:PL:GQ 0/1:127,0,255:99 chr2 127821499 . T C 143 . DP=74;VDB=0.0399;AF1=0.5;AC1=1;DP4=30,15,12,14;MQ=59;FQ=146;PV4=0.13,1.8e-13,1,1 GT:PL:GQ 0/1:173,0,255:99 chr2 127826533 . A G 155 . DP=44;VDB=0.0216;AF1=0.5;AC1=1;DP4=10,13,9,10;MQ=60;FQ=158;PV4=1,4.4e-11,1,0.37 GT:PL:GQ 0/1:185,0,255:99 chr2 127839474 . G A 222 . DP=29;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,7,20;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr2 127839534 . T C 141 . DP=9;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:174,27,0:51 chr2 127864546 . G A 72 . DP=46;VDB=0.0373;AF1=0.5;AC1=1;DP4=12,12,5,13;MQ=58;FQ=75;PV4=0.21,1.3e-13,0.021,0.48 GT:PL:GQ 0/1:102,0,255:99 chr2 127944781 . A AC 86.5 . INDEL;DP=8;VDB=0.0004;AF1=0.5;AC1=1;DP4=1,1,5,0;MQ=60;FQ=19.5;PV4=0.29,1,1,0.47 GT:PL:GQ 0/1:124,0,54:57 chr2 127950904 . A T 3.01 . DP=8;VDB=0.0116;AF1=0.4997;AC1=1;DP4=0,5,0,3;MQ=60;FQ=4.77;PV4=1,7.2e-05,1,1 GT:PL:GQ 0/1:30,0,119:28 chr2 127951458 . G A 9.52 . DP=41;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,9,6,2;MQ=58;FQ=12.3;PV4=0.21,2.8e-10,1,1 GT:PL:GQ 0/1:39,0,255:41 chr2 127951459 . C T 35 . DP=41;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,9,6,3;MQ=58;FQ=38;PV4=0.41,2.8e-09,1,1 GT:PL:GQ 0/1:65,0,255:68 chr2 128015367 . C T 86.1 . DP=8;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,2,5;MQ=60;FQ=-48 GT:PL:GQ 1/1:119,21,0:39 chr2 128028792 . T C 68 . DP=13;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:101,30,0:57 chr2 128050134 . T C 43.3 . DP=6;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:76,15,0:27 chr2 128081682 . C A 116 . DP=18;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,0,9,0;MQ=60;FQ=111;PV4=1,0.43,1,0.4 GT:PL:GQ 0/1:146,0,139:99 chr2 128175862 . C T 181 . DP=22;VDB=0.0099;AF1=0.5;AC1=1;DP4=9,0,10,2;MQ=60;FQ=104;PV4=0.49,1,1,1 GT:PL:GQ 0/1:211,0,131:99 chr2 128175875 . G A 181 . DP=30;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,24,6;MQ=60;FQ=-117 GT:PL:GQ 1/1:214,90,0:99 chr2 128177377 . C T 114 . DP=18;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,14,3;MQ=60;FQ=-78 GT:PL:GQ 1/1:147,51,0:99 chr2 128180872 . G T 106 . DP=15;VDB=0.0216;AF1=0.5;AC1=1;DP4=8,1,4,2;MQ=58;FQ=109;PV4=0.53,0.28,0.12,1 GT:PL:GQ 0/1:136,0,176:99 chr2 128181028 . A G 174 . DP=26;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,14;MQ=57;FQ=-105 GT:PL:GQ 1/1:207,78,0:99 chr2 128181234 . GCCCCC GCCCC 10.8 . INDEL;DP=9;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,4,0,5;MQ=57;FQ=4.81;PV4=1,2.8e-06,0.2,0.34 GT:PL:GQ 0/1:48,0,38:41 chr2 128271958 . C T 114 . DP=51;VDB=0.0393;AF1=0.5;AC1=1;DP4=8,19,6,16;MQ=60;FQ=117;PV4=1,4.2e-15,1,1 GT:PL:GQ 0/1:144,0,255:99 chr2 128281469 . C T 40 . DP=8;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=60;FQ=36;PV4=1,0.0033,1,1 GT:PL:GQ 0/1:70,0,64:66 chr2 128321770 . G A 222 . DP=56;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,32;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr2 128338519 . T G 180 . DP=19;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,5,14;MQ=60;FQ=-84 GT:PL:GQ 1/1:213,57,0:99 chr2 128339456 . G T 180 . DP=33;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,28,5;MQ=60;FQ=-126 GT:PL:GQ 1/1:213,99,0:99 chr2 128342547 . G A 222 . DP=36;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,5,30;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr2 128345960 . T C 142 . DP=20;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,5;MQ=60;FQ=-87 GT:PL:GQ 1/1:175,60,0:99 chr2 128350578 . TGG TGGG 166 . INDEL;DP=26;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,26;MQ=60;FQ=-113 GT:PL:GQ 1/1:207,78,0:99 chr2 128363530 . GCC GCCC 214 . INDEL;DP=15;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,3,12;MQ=58;FQ=-79.5 GT:PL:GQ 1/1:255,45,0:87 chr2 128385340 . C A 225 . DP=100;VDB=0.0400;AF1=0.5;AC1=1;DP4=31,23,28,15;MQ=60;FQ=225;PV4=0.53,0.27,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr2 128400608 . C T 94 . DP=17;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,12;MQ=60;FQ=-72 GT:PL:GQ 1/1:127,45,0:87 chr2 128411950 . A G 8.64 . DP=11;VDB=0.0003;AF1=0.5;AC1=1;DP4=5,0,4,0;MQ=60;FQ=11.3;PV4=1,2.6e-05,1,0.13 GT:PL:GQ 0/1:38,0,116:40 chr2 128615500 . A G 4.13 . DP=6;VDB=0.0125;AF1=0.4998;AC1=1;DP4=4,0,2,0;MQ=60;FQ=6.2;PV4=1,0.032,1,0.32 GT:PL:GQ 0/1:32,0,96:31 chr2 128708063 . T C 213 . DP=15;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:246,45,0:87 chr2 128744580 . A G 200 . DP=73;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,19,52;MQ=59;FQ=-241 GT:PL:GQ 1/1:233,214,0:99 chr2 128753854 . T C 161 . DP=39;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,34,5;MQ=60;FQ=-144 GT:PL:GQ 1/1:194,117,0:99 chr2 128754041 . G A 225 . DP=34;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,9,5,18;MQ=60;FQ=164;PV4=1,0.023,1,0.099 GT:PL:GQ 0/1:255,0,191:99 chr2 128757804 . C T 126 . DP=46;VDB=0.0373;AF1=0.5;AC1=1;DP4=17,10,8,10;MQ=59;FQ=129;PV4=0.24,3e-19,0.11,0.15 GT:PL:GQ 0/1:156,0,255:99 chr2 128772310 . C T 173 . DP=35;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,1,11,2;MQ=60;FQ=176;PV4=0.54,1,1,0.5 GT:PL:GQ 0/1:203,0,216:99 chr2 128849114 . T C 222 . DP=50;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,33;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr2 128860835 . A G 171 . DP=16;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,16;MQ=60;FQ=-75 GT:PL:GQ 1/1:204,48,0:93 chr2 128870808 . T C 204 . DP=73;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,59;MQ=60;FQ=-241 GT:PL:GQ 1/1:237,214,0:99 chr2 128872595 . C T 55 . DP=31;VDB=0.0053;AF1=0.5;AC1=1;DP4=13,4,14,0;MQ=60;FQ=58;PV4=0.11,3.9e-10,1,0.2 GT:PL:GQ 0/1:85,0,255:88 chr2 128874061 . G A 52 . DP=11;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:85,33,0:63 chr2 128877837 . G C 87.5 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:120,12,0:21 chr2 128878014 . G A 144 . DP=99;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,45,47;MQ=60;FQ=-282 GT:PL:GQ 1/1:177,255,0:99 chr2 128878066 . T C 82 . DP=76;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,36,7,27;MQ=60;FQ=85;PV4=0.36,4.5e-30,0.14,1 GT:PL:GQ 0/1:112,0,255:99 chr2 128878667 . T C 48 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:80,9,0:16 chr2 128880899 . T A 83 . DP=12;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,2,10;MQ=60;FQ=-63 GT:PL:GQ 1/1:116,36,0:69 chr2 128890878 . TG TGG 217 . INDEL;DP=81;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,21,12,33;MQ=60;FQ=217;PV4=0.33,1,0.19,1 GT:PL:GQ 0/1:255,0,255:99 chr2 128913757 . G A 175 . DP=25;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,24,0;MQ=59;FQ=-99 GT:PL:GQ 1/1:208,72,0:99 chr2 128915057 . T A 50.5 . DP=4;VDB=0.0126;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:83,12,0:21 chr2 128929028 . A T 6.79 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:37,6,0:7 chr2 128934400 . T C 222 . DP=37;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,19,17;MQ=60;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr2 128936000 . T C 65 . DP=14;VDB=0.0218;AF1=0.5;AC1=1;DP4=5,5,3,1;MQ=60;FQ=68;PV4=0.58,1,1,0.41 GT:PL:GQ 0/1:95,0,228:98 chr2 128936171 . TATGATGA TATGA 64.5 . INDEL;DP=6;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,3,1,1;MQ=60;FQ=67.5;PV4=1,1e-05,1,1 GT:PL:GQ 0/1:102,0,195:99 chr2 128939799 . C T 225 . DP=87;VDB=0.0400;AF1=0.5;AC1=1;DP4=23,19,21,19;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 128939817 . G A 139 . DP=73;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,17,14,23;MQ=60;FQ=142;PV4=0.34,2.5e-27,1,0.37 GT:PL:GQ 0/1:169,0,255:99 chr2 128944424 . T C 222 . DP=31;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,5,24;MQ=59;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr2 129075797 . A C 3.01 . DP=9;VDB=0.0126;AF1=0.4997;AC1=1;DP4=1,3,4,0;MQ=23;FQ=4.77;PV4=0.14,0.015,0.0027,0.1 GT:PL:GQ 0/1:30,0,66:28 chr2 129075877 . G T 70 . DP=13;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,1,3,5;MQ=23;FQ=38;PV4=0.27,4e-05,0.22,1 GT:PL:GQ 0/1:100,0,65:68 chr2 129075961 . T C 27 . DP=10;VDB=0.0324;AF1=0.5;AC1=1;DP4=5,1,3,1;MQ=49;FQ=30;PV4=1,1,0.011,0.39 GT:PL:GQ 0/1:57,0,112:60 chr2 130738163 . G A 119 . DP=160;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,53,23,63;MQ=39;FQ=122;PV4=0.57,1.6e-58,0.27,0.33 GT:PL:GQ 0/1:149,0,255:99 chr2 130750446 . C A 39 . DP=21;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,4,5,3;MQ=28;FQ=42;PV4=1,0.0074,0.042,1 GT:PL:GQ 0/1:69,0,164:72 chr2 130897055 . G A 24 . DP=6;VDB=0.0192;AF1=0.5;AC1=1;DP4=3,1,1,1;MQ=57;FQ=27;PV4=1,1,0.089,0.12 GT:PL:GQ 0/1:54,0,106:57 chr2 130897234 . C T 41 . DP=10;VDB=0.0120;AF1=0.5;AC1=1;DP4=3,2,3,2;MQ=49;FQ=44;PV4=1,0.017,1,0.33 GT:PL:GQ 0/1:71,0,120:74 chr2 130900188 . A G 204 . DP=49;VDB=0.0393;AF1=0.5;AC1=1;DP4=18,9,15,4;MQ=51;FQ=207;PV4=0.51,0.3,0.067,0.12 GT:PL:GQ 0/1:234,0,255:99 chr2 130902067 . C T 68 . DP=16;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,3,3,6;MQ=42;FQ=71;PV4=0.61,1.2e-06,0.036,1 GT:PL:GQ 0/1:98,0,157:99 chr2 130902194 . C T 37 . DP=10;VDB=0.0157;AF1=0.5;AC1=1;DP4=2,3,1,3;MQ=30;FQ=40;PV4=1,0.00018,1,0.27 GT:PL:GQ 0/1:67,0,97:70 chr2 130902549 . C T 13 . DP=2;VDB=0.0073;AF1=1;AC1=2;DP4=0,0,0,2;MQ=29;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr2 130910847 . G A 148 . DP=105;VDB=0.0399;AF1=0.5;AC1=1;DP4=37,12,36,18;MQ=59;FQ=151;PV4=0.39,4.8e-40,0.48,1 GT:PL:GQ 0/1:178,0,255:99 chr2 130925088 . C T 112 . DP=18;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,8,4,3;MQ=60;FQ=115;PV4=0.33,0.28,1,1 GT:PL:GQ 0/1:142,0,211:99 chr2 130930819 . C T 83 . DP=32;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,5,14,3;MQ=45;FQ=86;PV4=0.42,9e-15,1,1 GT:PL:GQ 0/1:113,0,219:99 chr2 130932371 . C A 15.1 . DP=3;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,3,0;MQ=53;FQ=-36 GT:PL:GQ 1/1:47,9,0:14 chr2 130939288 . A G 117 . DP=32;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,6,4,14;MQ=60;FQ=120;PV4=0.14,5.6e-11,1,1 GT:PL:GQ 0/1:147,0,219:99 chr2 130939348 . G A 105 . DP=21;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,9,0,10;MQ=60;FQ=108;PV4=0.48,1,1,1 GT:PL:GQ 0/1:135,0,175:99 chr2 130940090 . G T 47 . DP=3;VDB=0.0077;AF1=1;AC1=2;DP4=0,0,2,1;MQ=46;FQ=-36 GT:PL:GQ 1/1:79,9,0:16 chr2 130941065 . T C 151 . DP=27;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,22,4;MQ=45;FQ=-105 GT:PL:GQ 1/1:184,78,0:99 chr2 130948303 . T C 71 . DP=10;VDB=0.0011;AF1=0.5;AC1=1;DP4=1,4,1,3;MQ=58;FQ=74;PV4=1,0.19,1,1 GT:PL:GQ 0/1:101,0,132:99 chr2 130949411 . G T 205 . DP=35;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,26,7;MQ=40;FQ=-126 GT:PL:GQ 1/1:238,99,0:99 chr2 130949491 . G A 114 . DP=68;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,21,8,10;MQ=45;FQ=117;PV4=0.42,0.33,0.016,1 GT:PL:GQ 0/1:144,0,255:99 chr2 130949553 . A G 40 . DP=56;VDB=0.0190;AF1=0.5;AC1=1;DP4=14,27,4,9;MQ=44;FQ=43;PV4=1,1,6.8e-07,1 GT:PL:GQ 0/1:70,0,255:73 chr2 130951548 . G A 209 . DP=35;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,23;MQ=45;FQ=-123 GT:PL:GQ 1/1:242,96,0:99 chr2 130951566 . G A 161 . DP=31;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,9,3,14;MQ=44;FQ=164;PV4=0.41,0.048,0.36,1 GT:PL:GQ 0/1:191,0,210:99 chr2 130951581 . A G 127 . DP=23;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,3,4,11;MQ=37;FQ=88;PV4=0.34,3.7e-07,1,1 GT:PL:GQ 0/1:157,0,115:99 chr2 130951584 . T C 117 . DP=21;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,3,4,10;MQ=37;FQ=86;PV4=0.35,1.7e-06,1,1 GT:PL:GQ 0/1:147,0,113:99 chr2 130951599 . G A 19.1 . DP=17;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,9,2,2;MQ=36;FQ=22;PV4=0.55,1,0.057,1 GT:PL:GQ 0/1:49,0,200:52 chr2 130952540 . C T 21 . DP=12;VDB=0.0004;AF1=0.5;AC1=1;DP4=7,0,5,0;MQ=49;FQ=24;PV4=1,1.2e-05,0.019,0.44 GT:PL:GQ 0/1:51,0,136:54 chr2 130952718 . G A 104 . DP=93;VDB=0.0392;AF1=0.5;AC1=1;DP4=32,33,11,13;MQ=50;FQ=107;PV4=0.81,0.37,5e-26,1 GT:PL:GQ 0/1:134,0,255:99 chr2 130952725 . C T 73 . DP=97;VDB=0.0271;AF1=0.5;AC1=1;DP4=31,36,13,16;MQ=49;FQ=76;PV4=1,4.1e-22,1.9e-35,1 GT:PL:GQ 0/1:103,0,255:99 chr2 130960023 . T C 137 . DP=85;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,30,12,32;MQ=51;FQ=140;PV4=1,5e-28,2.3e-08,1 GT:PL:GQ 0/1:167,0,255:99 chr2 130987792 . G A 223 . DP=56;VDB=0.0400;AF1=0.5;AC1=1;DP4=18,15,17,5;MQ=59;FQ=224;PV4=0.15,1,0.042,1 GT:PL:GQ 0/1:253,0,255:99 chr2 131338146 . ACCC ACC 6.55 . INDEL;DP=8;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=20;FQ=4.3;PV4=1,1.7e-05,1,0.36 GT:PL:GQ 0/1:43,0,38:40 chr2 131487673 . A C 210 . DP=105;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,30,65;MQ=60;FQ=-282 GT:PL:GQ 1/1:243,255,0:99 chr2 131520663 . T C 195 . DP=106;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,37,54;MQ=60;FQ=-282 GT:PL:GQ 1/1:228,255,0:99 chr2 131672950 . A G 222 . DP=97;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,47,44;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 131673316 . C T 180 . DP=44;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,25;MQ=59;FQ=-147 GT:PL:GQ 1/1:213,120,0:99 chr2 131674285 . A G 222 . DP=70;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,31,32;MQ=60;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr2 131769237 . G A 117 . DP=31;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,0,16,3;MQ=59;FQ=120;PV4=0.26,1.2e-13,1,0.18 GT:PL:GQ 0/1:147,0,156:99 chr2 131798737 . C G 125 . DP=58;VDB=0.0380;AF1=0.5;AC1=1;DP4=29,6,22,0;MQ=60;FQ=128;PV4=0.072,0.26,1,1 GT:PL:GQ 0/1:155,0,255:99 chr2 131799563 . C T 104 . DP=27;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,7,3,13;MQ=60;FQ=107;PV4=0.39,1.3e-09,1,1 GT:PL:GQ 0/1:134,0,201:99 chr2 131800943 . G C 37 . DP=22;VDB=0.0118;AF1=0.5;AC1=1;DP4=10,3,7,1;MQ=60;FQ=40;PV4=1,2.2e-06,1,1 GT:PL:GQ 0/1:67,0,218:70 chr2 131802045 . C T 106 . DP=33;VDB=0.0384;AF1=0.5;AC1=1;DP4=2,14,5,11;MQ=60;FQ=109;PV4=0.39,9.1e-08,1,0.49 GT:PL:GQ 0/1:136,0,199:99 chr2 131812738 . C T 43.5 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:76,12,0:21 chr2 131829560 . A ACACC 217 . INDEL;DP=19;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,8,1,9;MQ=56;FQ=194;PV4=1,1,0.35,1 GT:PL:GQ 0/1:255,0,229:99 chr2 132229720 . T C 43 . DP=46;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,23,2,16;MQ=47;FQ=46;PV4=0.57,9.4e-17,2.3e-20,1 GT:PL:GQ 0/1:73,0,206:76 chr2 132229721 . G A 33 . DP=48;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,23,2,15;MQ=47;FQ=36;PV4=0.56,1.5e-12,1.1e-19,1 GT:PL:GQ 0/1:63,0,204:66 chr2 132237983 . A G 6.98 . DP=8;VDB=0.0030;AF1=0.4999;AC1=1;DP4=5,0,3,0;MQ=47;FQ=9.53;PV4=1,0.00054,0.015,1 GT:PL:GQ 0/1:36,0,113:37 chr2 132248379 . T G 225 . DP=32;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,10,6,11;MQ=60;FQ=207;PV4=1,1,0.19,1 GT:PL:GQ 0/1:255,0,234:99 chr2 132248459 . G T 120 . DP=30;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,8,6,6;MQ=55;FQ=123;PV4=1,1.2e-06,1,1 GT:PL:GQ 0/1:150,0,255:99 chr2 132248584 . T C 137 . DP=42;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,21,13;MQ=58;FQ=-129 GT:PL:GQ 1/1:170,102,0:99 chr2 132257830 . C T 205 . DP=31;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,5,7,7;MQ=58;FQ=208;PV4=0.46,0.25,0.064,0.34 GT:PL:GQ 0/1:235,0,255:99 chr2 132258031 . A G 200 . DP=62;VDB=0.0400;AF1=0.5;AC1=1;DP4=27,11,13,8;MQ=54;FQ=203;PV4=0.56,0.35,2.6e-11,0.41 GT:PL:GQ 0/1:230,0,255:99 chr2 132258259 . C T 39 . DP=7;VDB=0.0271;AF1=0.5032;AC1=1;DP4=0,3,0,4;MQ=23;FQ=-8.63;PV4=1,1,1,1 GT:PL:GQ 0/1:69,0,19:22 chr2 132258593 . A G 61 . DP=22;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,2,12,0;MQ=52;FQ=64;PV4=0.19,3e-10,1,0.28 GT:PL:GQ 0/1:91,0,167:94 chr2 132258815 . G A 39 . DP=31;VDB=0.0359;AF1=0.5;AC1=1;DP4=9,8,5,7;MQ=46;FQ=42;PV4=0.71,4.8e-14,1,0.44 GT:PL:GQ 0/1:69,0,245:72 chr2 132266015 . T A 81 . DP=46;VDB=0.0216;AF1=0.5;AC1=1;DP4=23,1,18,1;MQ=56;FQ=84;PV4=1,2.4e-18,0.00012,0.1 GT:PL:GQ 0/1:111,0,213:99 chr2 132266142 . G C 169 . DP=123;VDB=0.0392;AF1=0.5;AC1=1;DP4=31,33,25,28;MQ=52;FQ=172;PV4=1,5.8e-39,3.2e-14,0.0066 GT:PL:GQ 0/1:199,0,255:99 chr2 132272326 . A G 145 . DP=24;VDB=0.0359;AF1=0.5;AC1=1;DP4=7,4,7,5;MQ=47;FQ=148;PV4=1,0.43,7.9e-17,0.092 GT:PL:GQ 0/1:175,0,218:99 chr2 132274474 . G A 78 . DP=5;VDB=0.0276;AF1=0.504;AC1=1;DP4=1,0,3,1;MQ=56;FQ=-9.5;PV4=1,1,1,1 GT:PL:GQ 0/1:108,0,18:21 chr2 132275343 . G T 103 . DP=67;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,16,26,16;MQ=56;FQ=106;PV4=0.017,1.8e-29,1,1 GT:PL:GQ 0/1:133,0,215:99 chr2 132275366 . A G 97 . DP=68;VDB=0.0365;AF1=0.5;AC1=1;DP4=29,20,2,15;MQ=56;FQ=100;PV4=0.00073,1,2.8e-10,1 GT:PL:GQ 0/1:127,0,255:99 chr2 132275396 . T C 222 . DP=67;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,24,38;MQ=54;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr2 132275838 . C G 14.9 . DP=2;VDB=0.0178;AF1=1;AC1=2;DP4=0,0,2,0;MQ=29;FQ=-33 GT:PL:GQ 1/1:46,6,0:10 chr2 132276039 . C T 55 . DP=17;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,4,2,6;MQ=54;FQ=58;PV4=0.33,0.00013,0.26,1 GT:PL:GQ 0/1:85,0,188:88 chr2 132276650 . G C 54 . DP=13;VDB=0.0033;AF1=0.5;AC1=1;DP4=7,1,5,0;MQ=44;FQ=57;PV4=1,0.48,0.33,1 GT:PL:GQ 0/1:84,0,155:87 chr2 132277686 . C T 182 . DP=29;VDB=0.0118;AF1=0.5;AC1=1;DP4=11,6,6,5;MQ=58;FQ=185;PV4=0.7,1,1,1 GT:PL:GQ 0/1:212,0,255:99 chr2 132287569 . G A 112 . DP=46;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,13,10,13;MQ=41;FQ=115;PV4=0.76,1.5e-20,1,1 GT:PL:GQ 0/1:142,0,242:99 chr2 132287824 . C T 166 . DP=68;VDB=0.0359;AF1=0.5;AC1=1;DP4=12,21,14,14;MQ=51;FQ=169;PV4=0.31,1e-12,0.09,1 GT:PL:GQ 0/1:196,0,255:99 chr2 132288102 . T C 20 . DP=14;VDB=0.0359;AF1=0.5;AC1=1;DP4=3,6,0,5;MQ=39;FQ=23;PV4=0.26,6.8e-06,0.046,1 GT:PL:GQ 0/1:50,0,174:53 chr2 132290399 . G A 168 . DP=13;VDB=0.0322;AF1=0.504;AC1=1;DP4=2,0,5,6;MQ=48;FQ=-9.5;PV4=0.46,0.27,1,1 GT:PL:GQ 0/1:198,0,18:21 chr2 132491544 . C G 222 . DP=41;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,30;MQ=58;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr2 132494171 . G A 145 . DP=29;VDB=0.0398;AF1=0.5;AC1=1;DP4=10,7,6,5;MQ=45;FQ=148;PV4=1,0.37,0.094,1 GT:PL:GQ 0/1:175,0,255:99 chr2 132494182 . G C 137 . DP=26;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,5,9,7;MQ=44;FQ=117;PV4=0.69,5.2e-10,1,0.42 GT:PL:GQ 0/1:167,0,144:99 chr2 132494272 . A G 107 . DP=6;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,6;MQ=40;FQ=-45 GT:PL:GQ 1/1:140,18,0:33 chr2 132592178 . T C 83 . DP=16;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,4,6,3;MQ=46;FQ=86;PV4=0.61,0.00074,0.00027,1 GT:PL:GQ 0/1:113,0,148:99 chr2 132592270 . G A 29 . DP=14;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,3,1,5;MQ=55;FQ=32;PV4=0.14,7.3e-05,0.0026,1 GT:PL:GQ 0/1:59,0,167:62 chr2 132593636 . C T 74 . DP=7;VDB=0.0041;AF1=0.5;AC1=1;DP4=1,2,3,1;MQ=57;FQ=54;PV4=0.49,0.27,1,1 GT:PL:GQ 0/1:104,0,81:84 chr2 133014510 . T C 26 . DP=9;VDB=0.0004;AF1=0.5;AC1=1;DP4=3,0,3,2;MQ=39;FQ=28.8;PV4=0.46,4.3e-06,0.057,1 GT:PL:GQ 0/1:56,0,69:59 chr2 133014602 . G C 92 . DP=49;VDB=0.0216;AF1=0.5;AC1=1;DP4=17,8,21,2;MQ=51;FQ=95;PV4=0.075,2.7e-14,1.4e-07,0.22 GT:PL:GQ 0/1:122,0,255:99 chr2 133014612 . A C 81 . DP=55;VDB=0.0298;AF1=0.5;AC1=1;DP4=17,8,17,2;MQ=54;FQ=84;PV4=0.15,5.3e-09,2e-05,0.4 GT:PL:GQ 0/1:111,0,255:99 chr2 133014619 . C T 13.2 . DP=56;VDB=0.0118;AF1=0.5;AC1=1;DP4=31,11,13,0;MQ=51;FQ=16.1;PV4=0.05,1,2.2e-12,1 GT:PL:GQ 0/1:43,0,255:46 chr2 133014640 . C T 44 . DP=64;VDB=0.0271;AF1=0.5;AC1=1;DP4=29,14,20,0;MQ=49;FQ=47;PV4=0.0028,1,6.3e-15,1 GT:PL:GQ 0/1:74,0,255:77 chr2 133014651 . ACC ACCC 194 . INDEL;DP=69;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,9,17,7;MQ=54;FQ=197;PV4=0.55,0.06,0.00024,0.11 GT:PL:GQ 0/1:232,0,248:99 chr2 133014657 . G A 18.1 . DP=72;VDB=0.0271;AF1=0.5;AC1=1;DP4=30,20,20,0;MQ=47;FQ=21;PV4=0.00034,2.7e-07,2.3e-10,1 GT:PL:GQ 0/1:48,0,255:51 chr2 133014678 . A G 157 . DP=84;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,18,26,22;MQ=49;FQ=160;PV4=0.49,4.3e-17,1.5e-11,1 GT:PL:GQ 0/1:187,0,255:99 chr2 133014703 . T C 225 . DP=76;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,16,20,29;MQ=48;FQ=212;PV4=0.8,1,7.1e-10,0.21 GT:PL:GQ 0/1:255,0,239:99 chr2 133014721 . T C 145 . DP=67;VDB=0.0140;AF1=0.5;AC1=1;DP4=8,15,15,29;MQ=48;FQ=148;PV4=1,3.1e-19,7.9e-09,0.43 GT:PL:GQ 0/1:175,0,255:99 chr2 133014751 . T C 44 . DP=39;VDB=0.0081;AF1=0.5;AC1=1;DP4=8,18,6,5;MQ=49;FQ=47;PV4=0.27,3.3e-09,1,1 GT:PL:GQ 0/1:74,0,255:77 chr2 133014776 . C T 8.64 . DP=16;VDB=0.0003;AF1=0.5;AC1=1;DP4=3,7,4,2;MQ=42;FQ=11.3;PV4=0.3,8.4e-10,1,1 GT:PL:GQ 0/1:38,0,171:40 chr2 133014786 . G A 42 . DP=9;VDB=0.0005;AF1=0.5;AC1=1;DP4=3,2,1,3;MQ=45;FQ=45;PV4=0.52,0.047,0.29,1 GT:PL:GQ 0/1:72,0,108:75 chr2 133075726 . A G 60 . DP=21;VDB=0.0053;AF1=0.5;AC1=1;DP4=2,8,4,6;MQ=53;FQ=63;PV4=0.63,7.7e-09,0.0045,1 GT:PL:GQ 0/1:90,0,198:93 chr2 133075904 . CAA CAAA 131 . INDEL;DP=49;VDB=0.0118;AF1=0.5;AC1=1;DP4=16,10,10,11;MQ=47;FQ=134;PV4=0.39,1,1.7e-26,1 GT:PL:GQ 0/1:169,0,255:99 chr2 133174764 . C T 133 . DP=67;VDB=0.0380;AF1=0.5;AC1=1;DP4=23,11,26,6;MQ=59;FQ=136;PV4=0.26,2.7e-20,0.48,1 GT:PL:GQ 0/1:163,0,255:99 chr2 133174999 . A G 222 . DP=116;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,31,76;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 133402607 . C T 51 . DP=24;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,1,9,1;MQ=58;FQ=54;PV4=1,1.3e-12,0.43,1 GT:PL:GQ 0/1:81,0,203:84 chr2 133425912 . C T 21 . DP=14;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,0,6,1;MQ=60;FQ=24;PV4=1,8.3e-10,1,1 GT:PL:GQ 0/1:51,0,139:54 chr2 133489601 . A G 155 . DP=61;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,22,9,22;MQ=60;FQ=158;PV4=0.38,2.9e-17,0.18,1 GT:PL:GQ 0/1:185,0,255:99 chr2 133539566 . G A 225 . DP=133;VDB=0.0392;AF1=0.5;AC1=1;DP4=43,29,34,26;MQ=59;FQ=225;PV4=0.73,0.29,1,0.16 GT:PL:GQ 0/1:255,0,255:99 chr2 133541107 . T A 97 . DP=42;VDB=0.0305;AF1=0.5;AC1=1;DP4=14,12,5,8;MQ=60;FQ=100;PV4=0.5,1.7e-10,1,1 GT:PL:GQ 0/1:127,0,255:99 chr2 133541444 . T C 108 . DP=40;VDB=0.0271;AF1=0.5;AC1=1;DP4=12,12,4,12;MQ=59;FQ=111;PV4=0.19,1.4e-13,0.11,1 GT:PL:GQ 0/1:138,0,255:99 chr2 133541454 . A G 101 . DP=42;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,14,5,12;MQ=59;FQ=104;PV4=0.52,3.7e-15,0.12,1 GT:PL:GQ 0/1:131,0,255:99 chr2 133542014 . T C 225 . DP=86;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,18,28,12;MQ=60;FQ=225;PV4=0.37,1,1,0.43 GT:PL:GQ 0/1:255,0,255:99 chr2 133542574 . C T 225 . DP=92;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,22,29,19;MQ=60;FQ=225;PV4=0.3,0.069,0.17,0.068 GT:PL:GQ 0/1:255,0,255:99 chr2 133554288 . A G 102 . DP=85;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,41,5,28;MQ=60;FQ=105;PV4=1,1.8e-30,1,1 GT:PL:GQ 0/1:132,0,255:99 chr2 133618220 . A G 36 . DP=32;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,21,0,11;MQ=60;FQ=39;PV4=1,2.4e-18,1,0.21 GT:PL:GQ 0/1:66,0,186:69 chr2 133683658 . G T 3.54 . DP=22;VDB=0.0019;AF1=0.4998;AC1=1;DP4=12,5,1,3;MQ=59;FQ=5.47;PV4=0.25,5.8e-05,0.018,0.43 GT:PL:GQ 0/1:31,0,255:30 chr2 133881219 . G A 24 . DP=17;VDB=0.0014;AF1=0.5;AC1=1;DP4=10,1,6,0;MQ=60;FQ=27;PV4=1,6.6e-07,1,0.48 GT:PL:GQ 0/1:54,0,195:57 chr2 133887421 . G T 48 . DP=13;VDB=0.0011;AF1=0.5;AC1=1;DP4=4,0,8,0;MQ=60;FQ=50.4;PV4=1,3.3e-05,1,1 GT:PL:GQ 0/1:78,0,86:80 chr2 134884700 . G A 93 . DP=50;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,9,17,2;MQ=59;FQ=96;PV4=0.16,7.3e-16,0.46,1 GT:PL:GQ 0/1:123,0,255:99 chr2 135096097 . T C 52 . DP=11;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:85,27,0:51 chr2 135470735 . A T 76 . DP=5;VDB=0.0049;AF1=0.501;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-4.75;PV4=1,0.45,1,1 GT:PL:GQ 0/1:106,0,24:27 chr2 135471290 . T C 32 . DP=12;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,7,0,5;MQ=60;FQ=35;PV4=1,0.013,1,1 GT:PL:GQ 0/1:62,0,115:65 chr2 135629927 . C T 58.1 . DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-48 GT:PL:GQ 1/1:91,21,0:39 chr2 135677268 . G A 116 . DP=11;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,7,3;MQ=60;FQ=-57 GT:PL:GQ 1/1:149,30,0:57 chr2 135677471 . AGTT AGTTTGTT 214 . INDEL;DP=25;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,9,16;MQ=56;FQ=-110 GT:PL:GQ 1/1:255,75,0:99 chr2 135694354 . G C 162 . DP=15;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:195,39,0:75 chr2 135694379 . C T 121 . DP=26;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,21,4;MQ=60;FQ=-102 GT:PL:GQ 1/1:154,75,0:99 chr2 135700151 . A T 125 . DP=5;VDB=0.0284;AF1=1;AC1=2;DP4=0,0,2,3;MQ=60;FQ=-42 GT:PL:GQ 1/1:158,15,0:27 chr2 135703338 . CTTTTTTTTTT CTTTTTTTTT 3.24 . INDEL;DP=25;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,23,2;MQ=60;FQ=-110 GT:PL:GQ 1/1:41,75,0:42 chr2 135705558 . G A 59 . DP=13;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:92,36,0:69 chr2 135710322 . A G 222 . DP=32;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,15,17;MQ=60;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr2 135711516 . C T 222 . DP=69;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,29,38;MQ=59;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr2 135711657 . G A 168 . DP=102;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,60,37;MQ=60;FQ=-282 GT:PL:GQ 1/1:201,255,0:99 chr2 135740876 . A G 222 . DP=107;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,27,78;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 135745392 . G A 220 . DP=81;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,48,31;MQ=59;FQ=-239;PV4=1,6e-07,1,0.23 GT:PL:GQ 1/1:253,212,0:99 chr2 135745545 . C T 222 . DP=98;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,51,46;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 135745722 . A G 222 . DP=130;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,66,59;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 135748872 . aaaaacaaaacaaaacaaaacaaaacaaaacaaaacaa aaaaacaaaacaaaacaaaacaaaacaaaacaa 111 . INDEL;DP=3;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:151,9,0:16 chr2 135781035 . C T 171 . DP=121;VDB=0.0380;AF1=0.5;AC1=1;DP4=42,16,45,12;MQ=60;FQ=174;PV4=0.52,4.5e-33,1,0.09 GT:PL:GQ 0/1:201,0,255:99 chr2 135884166 . A G 225 . DP=39;VDB=0.0393;AF1=0.5;AC1=1;DP4=14,1,19,5;MQ=59;FQ=166;PV4=0.38,0.077,0.22,0.09 GT:PL:GQ 0/1:255,0,193:99 chr2 135907846 . T C 57 . DP=5;VDB=0.0183;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=33;PV4=1,0.33,1,0.25 GT:PL:GQ 0/1:87,0,60:63 chr2 135911422 . T C 132 . DP=108;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,31,21,38;MQ=60;FQ=135;PV4=0.84,1.7e-43,0.19,0.11 GT:PL:GQ 0/1:162,0,255:99 chr2 135965376 . T C 225 . DP=51;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,16,8,17;MQ=60;FQ=225;PV4=1,1,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr2 135988127 . T A 225 . DP=55;VDB=0.0393;AF1=0.5;AC1=1;DP4=9,17,11,14;MQ=60;FQ=225;PV4=0.57,0.35,1,0.24 GT:PL:GQ 0/1:255,0,255:99 chr2 135988186 . G A 103 . DP=49;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,3,17,7;MQ=59;FQ=106;PV4=0.3,1.7e-22,0.092,0.26 GT:PL:GQ 0/1:133,0,255:99 chr2 135988235 . C T 143 . DP=66;VDB=0.0322;AF1=0.5;AC1=1;DP4=21,9,21,12;MQ=60;FQ=146;PV4=0.79,3.2e-26,1,1 GT:PL:GQ 0/1:173,0,255:99 chr2 135988416 . C T 102 . DP=69;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,27,7,22;MQ=60;FQ=105;PV4=0.78,4.5e-24,0.13,1 GT:PL:GQ 0/1:132,0,255:99 chr2 136107512 . C G 40 . DP=54;VDB=0.0244;AF1=0.5;AC1=1;DP4=24,5,23,2;MQ=60;FQ=43;PV4=0.43,4.8e-17,0.14,0.43 GT:PL:GQ 0/1:70,0,255:73 chr2 136107839 . G A 13.2 . DP=8;VDB=0.0082;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=57;FQ=16.1;PV4=1,9.6e-06,0.18,0.19 GT:PL:GQ 0/1:43,0,98:46 chr2 136407479 . A G 225 . DP=86;VDB=0.0298;AF1=0.5;AC1=1;DP4=17,20,32,14;MQ=60;FQ=225;PV4=0.043,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 136409574 . A C 78 . DP=12;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,4,1,7;MQ=60;FQ=55;PV4=1,0.00054,1,1 GT:PL:GQ 0/1:108,0,82:85 chr2 136418741 . T C 68 . DP=34;VDB=0.0042;AF1=0.5;AC1=1;DP4=13,0,20,0;MQ=60;FQ=71;PV4=1,4.7e-12,1,1 GT:PL:GQ 0/1:98,0,157:99 chr2 136467164 . C A 155 . DP=53;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,2,50;MQ=60;FQ=-184 GT:PL:GQ 1/1:188,157,0:99 chr2 136511817 . A G 171 . DP=128;VDB=0.0400;AF1=0.5;AC1=1;DP4=20,47,20,33;MQ=59;FQ=174;PV4=0.44,1.7e-23,1,1 GT:PL:GQ 0/1:201,0,255:99 chr2 136527443 . GTGATTGATT GTGATTGATTGATT 217 . INDEL;DP=78;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,15,21,17;MQ=57;FQ=217;PV4=1,1,0.0028,1 GT:PL:GQ 0/1:255,0,255:99 chr2 136545844 . C G 35 . DP=10;VDB=0.0033;AF1=0.5;AC1=1;DP4=5,0,3,0;MQ=60;FQ=38;PV4=1,0.054,1,0.23 GT:PL:GQ 0/1:65,0,123:68 chr2 136546110 . A G 5.46 . DP=3;VDB=0.0167;AF1=0.5003;AC1=1;DP4=0,1,0,2;MQ=60;FQ=3.03;PV4=1,0.077,1,1 GT:PL:GQ 0/1:34,0,28:31 chr2 136552188 . G A 52 . DP=9;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,1,4,2;MQ=60;FQ=51.5;PV4=1,4.8e-05,1,1 GT:PL:GQ 0/1:82,0,81:81 chr2 136555525 . T G 21 . DP=9;VDB=0.0025;AF1=0.5;AC1=1;DP4=3,1,4,0;MQ=60;FQ=24;PV4=1,0.00025,1,0.23 GT:PL:GQ 0/1:51,0,113:54 chr2 136555659 . T C 184 . DP=59;VDB=0.0393;AF1=0.5;AC1=1;DP4=16,11,15,16;MQ=60;FQ=187;PV4=0.44,2e-10,1,0.37 GT:PL:GQ 0/1:214,0,255:99 chr2 136561557 . G A 162 . DP=39;VDB=0.0359;AF1=0.5;AC1=1;DP4=9,7,13,10;MQ=60;FQ=165;PV4=1,1.8e-09,1,0.021 GT:PL:GQ 0/1:192,0,255:99 chr2 136565028 . C G 64 . DP=9;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:97,27,0:51 chr2 136569848 . C A 10.4 . DP=7;VDB=0.0033;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=13.2;PV4=1,0.00027,1,0.48 GT:PL:GQ 0/1:40,0,79:42 chr2 136575199 . G T 225 . DP=68;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,15,19,17;MQ=59;FQ=225;PV4=1,1,1,0.35 GT:PL:GQ 0/1:255,0,255:99 chr2 136575534 . T C 222 . DP=48;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,19,26;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr2 136590746 . C T 225 . DP=45;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,9,12,10;MQ=59;FQ=225;PV4=0.77,0.1,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr2 136594158 . G A 110 . DP=59;VDB=0.0345;AF1=0.5;AC1=1;DP4=27,3,23,4;MQ=59;FQ=113;PV4=0.7,1.1e-21,1,1 GT:PL:GQ 0/1:140,0,255:99 chr2 136610598 . A G 17.1 . DP=6;VDB=0.0110;AF1=0.5;AC1=1;DP4=0,2,1,3;MQ=60;FQ=19.7;PV4=1,0.00032,1,1 GT:PL:GQ 0/1:47,0,58:50 chr2 136614255 . G A 77 . DP=14;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,2,7,2;MQ=60;FQ=52;PV4=0.53,0.0032,1,1 GT:PL:GQ 0/1:107,0,79:82 chr2 136622543 . T G 29 . DP=25;VDB=0.0006;AF1=0.5;AC1=1;DP4=13,0,12,0;MQ=59;FQ=32;PV4=1,1.6e-18,1,1 GT:PL:GQ 0/1:59,0,172:62 chr2 136622825 . A G 222 . DP=43;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,2,40;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr2 136633771 . T C 10.5 . DP=4;VDB=0.0107;AF1=0.508;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-12.3;PV4=1,0.032,1,0.45 GT:PL:GQ 0/1:40,0,15:19 chr2 136633962 . G A 191 . DP=28;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,9,7,7;MQ=59;FQ=193;PV4=0.7,0.069,1,0.009 GT:PL:GQ 0/1:221,0,228:99 chr2 136719173 . A G 91 . DP=12;VDB=0.0011;AF1=0.5;AC1=1;DP4=1,5,0,6;MQ=60;FQ=93.8;PV4=1,1,1,0.15 GT:PL:GQ 0/1:121,0,133:99 chr2 136740900 . T C 90 . DP=25;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,4,8,5;MQ=60;FQ=93;PV4=1,1.1e-13,1,1 GT:PL:GQ 0/1:120,0,238:99 chr2 136743143 . G C 34 . DP=36;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,18,0,13;MQ=60;FQ=37;PV4=0.14,8.1e-12,1,1 GT:PL:GQ 0/1:64,0,255:67 chr2 136873549 . A T 20.6 . DP=30;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:53,12,0:21 chr2 137639616 . C T 3.98 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr2 137748382 . C T 126 . DP=45;VDB=0.0393;AF1=0.5;AC1=1;DP4=17,4,17,5;MQ=60;FQ=129;PV4=1,6.1e-20,1,0.33 GT:PL:GQ 0/1:156,0,255:99 chr2 137814477 . C G 189 . DP=60;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,29,29;MQ=60;FQ=-202 GT:PL:GQ 1/1:222,175,0:99 chr2 137872896 . T G 17.1 . DP=4;VDB=0.0040;AF1=0.5005;AC1=1;DP4=0,1,0,3;MQ=60;FQ=-3.02;PV4=1,0.01,1,0.18 GT:PL:GQ 0/1:47,0,27:30 chr2 137917922 . T A 222 . DP=156;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,63,86;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 138000226 . T C 222 . DP=42;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,11,27;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr2 138163391 . T C 43.1 . DP=10;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:76,21,0:39 chr2 138169158 . T C 122 . DP=33;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,28,2;MQ=60;FQ=-117 GT:PL:GQ 1/1:155,90,0:99 chr2 138208631 . G T 124 . DP=21;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,11,0,10;MQ=60;FQ=127;PV4=1,0.089,1,0.27 GT:PL:GQ 0/1:154,0,167:99 chr2 138237038 . C T 122 . DP=13;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,5,8;MQ=60;FQ=-66 GT:PL:GQ 1/1:155,39,0:75 chr2 138425298 . A C 109 . DP=43;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,17,7,9;MQ=60;FQ=112;PV4=0.75,1.1e-12,1,1 GT:PL:GQ 0/1:139,0,255:99 chr2 139045972 . T C 222 . DP=120;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,59,56;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 139046301 . A G 222 . DP=189;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,92,90;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 139046385 . G A 169 . DP=58;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,7,48;MQ=59;FQ=-193 GT:PL:GQ 1/1:202,166,0:99 chr2 139316934 . G T 52 . DP=15;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,4,3,5;MQ=60;FQ=55;PV4=1,1.8e-11,1,0.41 GT:PL:GQ 0/1:82,0,175:85 chr2 139429068 . G A 222 . DP=120;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,40,69;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 139429286 . C T 96 . DP=21;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,15,2,4;MQ=60;FQ=99;PV4=0.071,0.49,1,0.27 GT:PL:GQ 0/1:126,0,174:99 chr2 140992337 . C A 198 . DP=49;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,19;MQ=60;FQ=-168 GT:PL:GQ 1/1:231,141,0:99 chr2 141004529 . A G 38.5 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:71,12,0:21 chr2 141027926 . A G 133 . DP=109;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,40,15,45;MQ=60;FQ=136;PV4=0.15,9.7e-47,0.11,1 GT:PL:GQ 0/1:163,0,255:99 chr2 141032088 . C T 222 . DP=111;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,48,51;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 141260668 . A G 126 . DP=85;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,25,5,37;MQ=60;FQ=129;PV4=0.017,2.1e-28,1,1 GT:PL:GQ 0/1:156,0,255:99 chr2 141274576 . T C 33 . DP=48;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,18,0,23;MQ=60;FQ=36;PV4=0.049,4.6e-20,1,1 GT:PL:GQ 0/1:63,0,255:66 chr2 141283603 . T G 82 . DP=24;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,22;MQ=60;FQ=-96 GT:PL:GQ 1/1:115,69,0:99 chr2 141284041 . A G 12.2 . DP=3;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:44,9,0:14 chr2 141298467 . A C 78 . DP=21;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,20,0;MQ=60;FQ=-87 GT:PL:GQ 1/1:111,60,0:99 chr2 141298674 . T C 222 . DP=74;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,11,59;MQ=59;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr2 141298682 . G C 172 . DP=69;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,52;MQ=59;FQ=-211 GT:PL:GQ 1/1:205,184,0:99 chr2 141298749 . G C 159 . DP=13;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:192,39,0:75 chr2 141299317 . A G 76 . DP=19;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,17,2;MQ=60;FQ=-84 GT:PL:GQ 1/1:109,57,0:99 chr2 141473505 . A T 132 . DP=12;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,9,3;MQ=60;FQ=-63 GT:PL:GQ 1/1:165,36,0:69 chr2 141474402 . GAAAAAAAA GAAAAAAAAA 42.5 . INDEL;DP=71;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,2,49;MQ=60;FQ=-189 GT:PL:GQ 1/1:83,154,0:99 chr2 141474456 . C T 13.9 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr2 141528592 . T C 111 . DP=8;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:144,18,0:33 chr2 141571329 . T C 102 . DP=65;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,22,11,23;MQ=60;FQ=105;PV4=0.4,2.8e-33,1,1 GT:PL:GQ 0/1:132,0,255:99 chr2 141571440 . C G 42 . DP=9;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,3,0,6;MQ=60;FQ=41.5;PV4=1,9e-06,1,1 GT:PL:GQ 0/1:72,0,71:71 chr2 141709419 . T G 101 . DP=63;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,23,19;MQ=60;FQ=-121;PV4=0.47,7e-10,1,1 GT:PL:GQ 1/1:134,94,0:99 chr2 141747249 . A T 132 . DP=43;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,4,33;MQ=59;FQ=-138 GT:PL:GQ 1/1:165,111,0:99 chr2 141747293 . T C 188 . DP=12;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-63 GT:PL:GQ 1/1:221,36,0:69 chr2 141751461 . C T 21 . DP=22;VDB=0.0033;AF1=0.5;AC1=1;DP4=12,0,9,0;MQ=59;FQ=24;PV4=1,1.7e-11,0.13,1 GT:PL:GQ 0/1:51,0,165:54 chr2 141751592 . G A 222 . DP=120;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,57,57;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 141763087 . G A 84 . DP=58;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,25,3,25;MQ=60;FQ=87;PV4=1,5.5e-29,0.17,1 GT:PL:GQ 0/1:114,0,244:99 chr2 141773397 . C A 182 . DP=111;VDB=0.0400;AF1=0.5;AC1=1;DP4=25,28,36,18;MQ=60;FQ=185;PV4=0.052,8e-25,0.08,0.44 GT:PL:GQ 0/1:212,0,255:99 chr2 141816621 . A G 88.1 . DP=8;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:121,21,0:39 chr2 141945949 . C T 120 . DP=7;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:153,21,0:39 chr2 142012027 . G T 105 . DP=30;VDB=0.0373;AF1=0.5;AC1=1;DP4=13,3,10,4;MQ=58;FQ=108;PV4=0.67,3.1e-11,0.46,0.08 GT:PL:GQ 0/1:135,0,255:99 chr2 142237868 . G A 32 . DP=3;VDB=0.0153;AF1=0.5006;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-3.53;PV4=1,1,1,1 GT:PL:GQ 0/1:62,0,26:29 chr2 142567738 . G T 100 . DP=13;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,13,0;MQ=58;FQ=-66 GT:PL:GQ 1/1:133,39,0:75 chr2 142888376 . G C 90 . DP=22;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,7,4,10;MQ=60;FQ=93;PV4=0.61,7.7e-09,1,0.44 GT:PL:GQ 0/1:120,0,145:99 chr2 143713700 . T A 34 . DP=11;VDB=0.0042;AF1=0.5;AC1=1;DP4=3,0,8,0;MQ=58;FQ=33.5;PV4=1,8.4e-06,0.28,0.48 GT:PL:GQ 0/1:64,0,63:63 chr2 143787274 . C T 77.1 . DP=6;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,1,5;MQ=56;FQ=-45 GT:PL:GQ 1/1:110,18,0:33 chr2 143913004 . T G 66 . DP=8;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:99,24,0:45 chr2 143973860 . G A 21 . DP=5;VDB=0.0192;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=55;FQ=24;PV4=1,1,0.14,0.056 GT:PL:GQ 0/1:51,0,89:54 chr2 144194565 . C T 222 . DP=26;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,13,12;MQ=59;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr2 144899559 . C A 127 . DP=64;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,47;MQ=60;FQ=-211 GT:PL:GQ 1/1:160,184,0:99 chr2 144934655 . agggg aGgggg 92.5 . INDEL;DP=10;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-64.5 GT:PL:GQ 1/1:133,30,0:57 chr2 145255210 . T C 212 . DP=52;VDB=0.0399;AF1=0.5;AC1=1;DP4=25,2,21,3;MQ=60;FQ=213;PV4=0.66,0.01,0.15,0.043 GT:PL:GQ 0/1:242,0,244:99 chr2 145271250 . C T 26 . DP=14;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,1,4,1;MQ=60;FQ=29;PV4=1,7.1e-07,1,1 GT:PL:GQ 0/1:56,0,171:59 chr2 147596973 . A G 67 . DP=15;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,3,4,3;MQ=60;FQ=70;PV4=1,0.03,1,1 GT:PL:GQ 0/1:97,0,160:99 chr2 148733548 . TAAAAAAA TAAAAAAAA 18.5 . INDEL;DP=19;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,7,4,6;MQ=59;FQ=9.7;PV4=0.63,1,1,0.15 GT:PL:GQ 0/1:56,0,44:47 chr2 149243260 . G A 5.29 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:35,6,0:6 chr2 149449185 . G A 222 . DP=110;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,65,41;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 149520214 . C A 136 . DP=8;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,8,0;MQ=57;FQ=-51 GT:PL:GQ 1/1:169,24,0:45 chr2 149853960 . A G 38 . DP=31;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,11,2,14;MQ=59;FQ=41;PV4=1,1.5e-19,1,1 GT:PL:GQ 0/1:68,0,210:71 chr2 150069645 . CGTGTGTGTGTGT CGTGTGTGTGTGTGT 217 . INDEL;DP=81;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,30,10,18;MQ=60;FQ=217;PV4=0.092,1,1,0.28 GT:PL:GQ 0/1:255,0,255:99 chr2 150305703 . G A 225 . DP=34;VDB=0.0384;AF1=0.5;AC1=1;DP4=2,12,6,13;MQ=59;FQ=167;PV4=0.42,0.2,1,1 GT:PL:GQ 0/1:255,0,194:99 chr2 150427516 . C T 19 . DP=3;VDB=0.0050;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:51,9,0:15 chr2 150432377 . C G 100 . DP=8;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,2,6;MQ=60;FQ=-51 GT:PL:GQ 1/1:133,24,0:45 chr2 150432976 . C T 190 . DP=51;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,32,18;MQ=60;FQ=-178 GT:PL:GQ 1/1:223,151,0:99 chr2 150433128 . C G 143 . DP=17;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,2,14;MQ=59;FQ=-75 GT:PL:GQ 1/1:176,48,0:93 chr2 150443689 . C G 222 . DP=91;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,33,57;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 150443813 . C T 62 . DP=17;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,17;MQ=60;FQ=-78 GT:PL:GQ 1/1:95,51,0:99 chr2 151328284 . GAAAAAAAAAAAA GAAAAAAAAAAA,GAAAAAAAAAA 16.6 . INDEL;DP=44;VDB=0.0365;AF1=1;AC1=2;DP4=0,2,6,26;MQ=60;FQ=-102;PV4=1,1,1,1 GT:PL:GQ 1/1:57,67,0,48,45,43:80 chr2 151900223 . T C 222 . DP=213;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,129,77;MQ=58;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 152108261 . T G 91 . DP=16;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:124,45,0:87 chr2 152109159 . C T 44.1 . DP=8;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-48 GT:PL:GQ 1/1:77,21,0:39 chr2 152117780 . T C 121 . DP=38;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,3,17,3;MQ=60;FQ=124;PV4=1,3.7e-13,1,0.27 GT:PL:GQ 0/1:151,0,230:99 chr2 152118032 . G T 17.1 . DP=7;VDB=0.0025;AF1=0.5;AC1=1;DP4=1,1,0,4;MQ=60;FQ=14.7;PV4=0.33,0.016,1,1 GT:PL:GQ 0/1:47,0,43:45 chr2 152118271 . G A 225 . DP=81;VDB=0.0365;AF1=0.5;AC1=1;DP4=23,15,26,16;MQ=59;FQ=225;PV4=1,0.094,1,0.2 GT:PL:GQ 0/1:255,0,255:99 chr2 152118275 . A G 120 . DP=86;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,17,26,16;MQ=59;FQ=123;PV4=1,1.2e-25,0.49,1 GT:PL:GQ 0/1:150,0,255:99 chr2 152118338 . GTTTTTT GTTTTTTT 58.5 . INDEL;DP=73;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,23,7,24;MQ=60;FQ=61.4;PV4=0.41,1,1,1 GT:PL:GQ 0/1:96,0,112:99 chr2 152138522 . T C 62 . DP=10;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,3,1,5;MQ=58;FQ=64.9;PV4=1,0.00012,0.22,0.25 GT:PL:GQ 0/1:92,0,109:95 chr2 152224940 . A G 58 . DP=4;VDB=0.0040;AF1=0.5008;AC1=1;DP4=0,1,0,3;MQ=60;FQ=-4.12;PV4=1,1,1,1 GT:PL:GQ 0/1:88,0,25:28 chr2 152266473 . T C 155 . DP=29;VDB=0.0322;AF1=1;AC1=2;DP4=1,0,24,3;MQ=59;FQ=-82;PV4=1,0.0084,1,1 GT:PL:GQ 1/1:188,55,0:99 chr2 152267061 . G A 225 . DP=45;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,16,13,6;MQ=59;FQ=225;PV4=0.067,1,0.13,0.19 GT:PL:GQ 0/1:255,0,255:99 chr2 152267072 . T G 179 . DP=44;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,19,23;MQ=60;FQ=-153 GT:PL:GQ 1/1:212,126,0:99 chr2 152267672 . G A 20.6 . DP=4;VDB=0.0110;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:53,12,0:21 chr2 152273503 . G A 3.01 . DP=10;VDB=0.0125;AF1=0.4997;AC1=1;DP4=1,6,0,3;MQ=60;FQ=4.77;PV4=1,0.089,1,1 GT:PL:GQ 0/1:30,0,135:28 chr2 152289767 . G A 77 . DP=22;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,9,1,11;MQ=60;FQ=80;PV4=1,2.8e-08,1,1 GT:PL:GQ 0/1:107,0,179:99 chr2 152292169 . GAAAAAAAAA GAAAAAAAA 5.31 . INDEL;DP=29;VDB=0.0118;AF1=0.543;AC1=1;DP4=0,8,3,10;MQ=60;FQ=-26.5;PV4=0.26,1,1,0.054 GT:PL:GQ 0/1:41,0,8:13 chr2 152303171 . G A 157 . DP=19;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,8,1,10;MQ=60;FQ=114;PV4=1,0.27,1,0.073 GT:PL:GQ 0/1:187,0,141:99 chr2 152311570 . G A 173 . DP=140;VDB=0.0365;AF1=0.5;AC1=1;DP4=29,36,38,35;MQ=60;FQ=176;PV4=0.4,8.6e-38,1,0.5 GT:PL:GQ 0/1:203,0,255:99 chr2 152320118 . G A 121 . DP=35;VDB=0.0384;AF1=0.5;AC1=1;DP4=5,10,6,14;MQ=60;FQ=124;PV4=1,3.2e-16,1,0.061 GT:PL:GQ 0/1:151,0,255:99 chr2 152322095 . A T 106 . DP=93;VDB=0.0392;AF1=0.5;AC1=1;DP4=34,10,34,14;MQ=60;FQ=109;PV4=0.64,8.4e-43,1,1 GT:PL:GQ 0/1:136,0,255:99 chr2 152331418 . C G 172 . DP=28;VDB=0.0164;AF1=0.5;AC1=1;DP4=12,6,7,3;MQ=60;FQ=175;PV4=1,1,1,1 GT:PL:GQ 0/1:202,0,255:99 chr2 152346979 . T C 225 . DP=53;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,14,13,14;MQ=60;FQ=225;PV4=1,0.33,1,0.45 GT:PL:GQ 0/1:255,0,255:99 chr2 152348842 . T A 116 . DP=98;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,33,16,23;MQ=60;FQ=119;PV4=1,1.1e-33,1,1 GT:PL:GQ 0/1:146,0,255:99 chr2 152349026 . G A 116 . DP=13;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,3,0,8;MQ=58;FQ=38;PV4=0.33,1,0.25,1 GT:PL:GQ 0/1:146,0,65:68 chr2 152350462 . T C 59 . DP=31;VDB=0.0081;AF1=0.5;AC1=1;DP4=7,15,3,6;MQ=60;FQ=62;PV4=1,6.4e-07,1,1 GT:PL:GQ 0/1:89,0,255:92 chr2 152352843 . C G 142 . DP=58;VDB=0.0322;AF1=0.5;AC1=1;DP4=23,11,16,8;MQ=60;FQ=145;PV4=1,2.2e-16,0.12,1 GT:PL:GQ 0/1:172,0,255:99 chr2 152353395 . T G 38 . DP=22;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,1,13,1;MQ=60;FQ=41;PV4=0.52,1e-14,1,1 GT:PL:GQ 0/1:68,0,128:71 chr2 152369117 . T C 87 . DP=31;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,28,0;MQ=60;FQ=-111 GT:PL:GQ 1/1:120,84,0:99 chr2 152374800 . G A 225 . DP=33;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,3,14,4;MQ=59;FQ=192;PV4=1,1,0.2,1 GT:PL:GQ 0/1:255,0,219:99 chr2 152382454 . C G 46 . DP=20;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,1,8,2;MQ=59;FQ=49;PV4=1,1.1e-08,0.17,0.14 GT:PL:GQ 0/1:76,0,176:79 chr2 152383913 . T C 135 . DP=13;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,0,7,1;MQ=60;FQ=75;PV4=1,0.4,1,0.3 GT:PL:GQ 0/1:165,0,102:99 chr2 152387553 . T C 225 . DP=60;VDB=0.0384;AF1=0.5;AC1=1;DP4=7,17,13,19;MQ=60;FQ=225;PV4=0.41,1,1,0.25 GT:PL:GQ 0/1:255,0,255:99 chr2 152388228 . G C 225 . DP=88;VDB=0.0380;AF1=0.5;AC1=1;DP4=31,15,29,9;MQ=60;FQ=225;PV4=0.47,0.37,1,0.046 GT:PL:GQ 0/1:255,0,255:99 chr2 152388415 . ATT AT 137 . INDEL;DP=19;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,7,1,10;MQ=59;FQ=120;PV4=1,0.21,1,1 GT:PL:GQ 0/1:175,0,155:99 chr2 152394534 . T G 82 . DP=37;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,12,5,16;MQ=60;FQ=85;PV4=1,2.2e-21,1,1 GT:PL:GQ 0/1:112,0,243:99 chr2 152403014 . C T 179 . DP=30;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,12,2,11;MQ=57;FQ=182;PV4=0.66,1,1,0.16 GT:PL:GQ 0/1:209,0,247:99 chr2 152404294 . C T 167 . DP=17;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,4,1,12;MQ=59;FQ=45;PV4=1,1,0.3,1 GT:PL:GQ 0/1:197,0,72:75 chr2 152409416 . C T 98 . DP=38;VDB=0.0042;AF1=0.5;AC1=1;DP4=2,19,3,13;MQ=60;FQ=101;PV4=0.63,1.2e-17,1,0.44 GT:PL:GQ 0/1:128,0,245:99 chr2 152417311 . TCCC TCCCC 92.5 . INDEL;DP=11;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,4,1,6;MQ=60;FQ=31.5;PV4=1,1,1,0.1 GT:PL:GQ 0/1:130,0,66:69 chr2 152419392 . A T 10.2 . DP=2;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:41,6,0:8 chr2 152421937 . A G 54 . DP=20;VDB=0.0164;AF1=0.5;AC1=1;DP4=9,0,10,1;MQ=59;FQ=57;PV4=1,4.4e-10,1,1 GT:PL:GQ 0/1:84,0,143:87 chr2 152422076 . C G 222 . DP=98;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,62,35;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 152425306 . G T 125 . DP=24;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,12,0,11;MQ=60;FQ=128;PV4=1,0.23,1,1 GT:PL:GQ 0/1:155,0,167:99 chr2 152427249 . A G 19.1 . DP=5;VDB=0.0177;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=20.9;PV4=1,0.018,1,0.00097 GT:PL:GQ 0/1:49,0,54:51 chr2 152475938 . T G 9.52 . DP=7;VDB=0.0020;AF1=0.5;AC1=1;DP4=4,0,3,0;MQ=60;FQ=12.3;PV4=1,0.0034,1,0.42 GT:PL:GQ 0/1:39,0,86:41 chr2 152476028 . C G 144 . DP=66;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,4,27,6;MQ=59;FQ=147;PV4=0.73,2.3e-21,1,1 GT:PL:GQ 0/1:174,0,255:99 chr2 152490219 . A G 134 . DP=47;VDB=0.0384;AF1=0.5;AC1=1;DP4=16,6,13,12;MQ=60;FQ=137;PV4=0.23,8.5e-14,1,0.094 GT:PL:GQ 0/1:164,0,255:99 chr2 152490458 . A G 222 . DP=45;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,30;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr2 152500449 . C G 15.1 . DP=8;VDB=0.0186;AF1=0.5;AC1=1;DP4=1,5,1,1;MQ=60;FQ=18.1;PV4=0.46,0.29,1,0.4 GT:PL:GQ 0/1:45,0,145:48 chr2 152522967 . T A 44 . DP=24;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,8,2,10;MQ=60;FQ=47;PV4=1,1.7e-14,1,0.16 GT:PL:GQ 0/1:74,0,174:77 chr2 152527572 . C T 222 . DP=77;VDB=0.0399;AF1=1;AC1=2;DP4=1,0,40,34;MQ=59;FQ=-226;PV4=1,0.32,1,0.22 GT:PL:GQ 1/1:255,199,0:99 chr2 152531077 . A G 222 . DP=122;VDB=0.0399;AF1=1;AC1=2;DP4=0,1,50,64;MQ=60;FQ=-282;PV4=1,1,0.45,1 GT:PL:GQ 1/1:255,255,0:99 chr2 152536498 . T A 165 . DP=57;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,38;MQ=59;FQ=-190 GT:PL:GQ 1/1:198,163,0:99 chr2 152552062 . A C 222 . DP=227;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,137,78;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 152566433 . A G 46 . DP=23;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,21;MQ=60;FQ=-90 GT:PL:GQ 1/1:79,63,0:99 chr2 152573902 . AGGC AGGCGGC 214 . INDEL;DP=81;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,57,22;MQ=55;FQ=-273 GT:PL:GQ 1/1:255,238,0:99 chr2 152573981 . A G 222 . DP=92;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,36,52;MQ=56;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 152581866 . T C 222 . DP=135;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,105,29;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 152584153 . A C 39.5 . DP=5;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:72,12,0:21 chr2 152827973 . A G 108 . DP=11;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:141,33,0:63 chr2 152828281 . C G 147 . DP=11;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:180,33,0:63 chr2 152954985 . G C 19.1 . DP=12;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,6,0,5;MQ=60;FQ=22;PV4=1,0.00017,1,1 GT:PL:GQ 0/1:49,0,139:52 chr2 153378459 . T C 222 . DP=76;VDB=0.0399;AF1=1;AC1=2;DP4=0,1,37,36;MQ=60;FQ=-221;PV4=1,1,1,0.21 GT:PL:GQ 1/1:255,194,0:99 chr2 153378574 . A G 55 . DP=30;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,18;MQ=59;FQ=-81 GT:PL:GQ 1/1:88,54,0:99 chr2 153405594 . G A 118 . DP=26;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,7,6,6;MQ=60;FQ=121;PV4=1,0.0017,1,0.43 GT:PL:GQ 0/1:148,0,234:99 chr2 153405684 . A G 22 . DP=13;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,4,1,7;MQ=60;FQ=25;PV4=1,6.3e-07,1,1 GT:PL:GQ 0/1:52,0,116:55 chr2 153415376 . T G 114 . DP=94;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,24,26,29;MQ=59;FQ=117;PV4=0.2,7.6e-39,1,1 GT:PL:GQ 0/1:144,0,255:99 chr2 153417325 . A G 67 . DP=29;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,1,12,2;MQ=60;FQ=70;PV4=1,1.3e-08,1,1 GT:PL:GQ 0/1:97,0,197:99 chr2 153435288 . G A 11.3 . DP=6;VDB=0.0199;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=56;FQ=14.2;PV4=1,0.0012,1,1 GT:PL:GQ 0/1:41,0,76:43 chr2 153468107 . C T 225 . DP=91;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,16,33,21;MQ=60;FQ=225;PV4=0.66,1,1,0.09 GT:PL:GQ 0/1:255,0,255:99 chr2 153476066 . Gcc GCCAcc 165 . INDEL;DP=9;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,2,4;MQ=56;FQ=-52.5 GT:PL:GQ 1/1:205,18,0:33 chr2 153478931 . T C 52.3 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:85,15,0:27 chr2 153481943 . T C 222 . DP=35;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,33,1;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr2 153483257 . T C 18.1 . DP=9;VDB=0.0049;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=60;FQ=21;PV4=1,1.1e-06,1,1 GT:PL:GQ 0/1:48,0,116:51 chr2 153484685 . G A 31 . DP=3;VDB=0.0194;AF1=0.502;AC1=1;DP4=1,0,1,1;MQ=52;FQ=-6.96;PV4=1,1,0.33,1 GT:PL:GQ 0/1:61,0,21:24 chr2 153492910 . G T 118 . DP=16;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,4;MQ=60;FQ=-75 GT:PL:GQ 1/1:151,48,0:93 chr2 153504552 . G A 88 . DP=35;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,15,2,14;MQ=60;FQ=91;PV4=1,4.9e-17,1,1 GT:PL:GQ 0/1:118,0,235:99 chr2 153514583 . G C 167 . DP=14;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:200,39,0:75 chr2 153519524 . A G 151 . DP=22;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,18,4;MQ=58;FQ=-93 GT:PL:GQ 1/1:184,66,0:99 chr2 153520782 . A G 121 . DP=5;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:154,15,0:27 chr2 153529361 . T C 63 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:95,9,0:16 chr2 153533155 . agctgctgctgctgctgccgctgctgctgctgc agctgctgctgccgctgctgctgctgc 217 . INDEL;DP=28;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,1,11,4;MQ=48;FQ=212;PV4=0.61,0.032,0.0032,1 GT:PL:GQ 0/1:255,0,247:99 chr2 153535670 . C T 219 . DP=13;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,3,7;MQ=60;FQ=-57 GT:PL:GQ 1/1:252,30,0:57 chr2 153549814 . G C 222 . DP=75;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,58,16;MQ=60;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr2 153572438 . C T 99 . DP=33;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,29,3;MQ=59;FQ=-123 GT:PL:GQ 1/1:132,96,0:99 chr2 153576580 . ATTT ATTTCTTT 144 . INDEL;DP=36;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,2,2,21;MQ=34;FQ=50.5;PV4=0.092,1,0.0029,0.3 GT:PL:GQ 0/1:182,0,85:88 chr2 153576599 . A C 17.1 . DP=31;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,4,0,24;MQ=32;FQ=19.9;PV4=0.034,3.1e-10,0.0012,0.38 GT:PL:GQ 0/1:47,0,61:50 chr2 153576607 . G A 79 . DP=25;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,4,0,17;MQ=33;FQ=65.9;PV4=0.059,0.12,0.0055,0.3 GT:PL:GQ 0/1:109,0,93:96 chr2 153577013 . G A 222 . DP=106;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,35,63;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 155099537 . T G 5.29 . DP=2;VDB=0.0167;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:35,6,0:6 chr2 155306885 . C T 222 . DP=27;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,24,2;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr2 155555195 . TCCCCC TCCCCCC 7.35 . INDEL;DP=15;VDB=0.0011;AF1=0.5;AC1=1;DP4=7,2,4,1;MQ=60;FQ=9.94;PV4=1,1,1,0.27 GT:PL:GQ 0/1:44,0,83:45 chr2 155711357 . T C 225 . DP=99;VDB=0.0393;AF1=0.5;AC1=1;DP4=34,14,32,14;MQ=60;FQ=225;PV4=1,0.054,1,0.45 GT:PL:GQ 0/1:255,0,255:99 chr2 157183211 . tccc tcc 157 . INDEL;DP=31;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,3,14,3;MQ=59;FQ=153;PV4=1,0.028,1,1 GT:PL:GQ 0/1:195,0,188:99 chr2 157189011 . G C 222 . DP=19;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,6,13;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr2 157406249 . G A 222 . DP=99;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,64;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 157406296 . A C 222 . DP=65;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,57;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr2 157425972 . G A 83 . DP=45;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,15,10,6;MQ=59;FQ=86;PV4=0.34,7.3e-10,1,1 GT:PL:GQ 0/1:113,0,255:99 chr2 157427593 . T C 98 . DP=10;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,8,2;MQ=60;FQ=-57 GT:PL:GQ 1/1:131,30,0:57 chr2 157427837 . C A 106 . DP=14;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,13;MQ=60;FQ=-69 GT:PL:GQ 1/1:139,42,0:81 chr2 157427850 . G A 96 . DP=12;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-63 GT:PL:GQ 1/1:129,36,0:69 chr2 158157361 . C T 225 . DP=62;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,22,17,9;MQ=60;FQ=225;PV4=0.04,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 158291188 . A C 59 . DP=10;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:92,30,0:57 chr2 158395079 . C G 88 . DP=40;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,36,2;MQ=60;FQ=-141 GT:PL:GQ 1/1:121,114,0:99 chr2 158400908 . C T 60 . DP=22;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,22,0;MQ=58;FQ=-93 GT:PL:GQ 1/1:93,66,0:99 chr2 158401137 . T C 222 . DP=29;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,24;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr2 158626980 . C T 182 . DP=59;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,27,27;MQ=60;FQ=-190 GT:PL:GQ 1/1:215,163,0:99 chr2 158636910 . G A 222 . DP=80;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,47,28;MQ=59;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr2 158637137 . A G 47 . DP=41;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,0,12;MQ=58;FQ=-63 GT:PL:GQ 1/1:80,36,0:69 chr2 158655883 . CAAAAAAAAAAA CAAAAAAAAAAAAA,CAAAAAAAAAAAA 34.5 . INDEL;DP=23;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,22,1;MQ=60;FQ=-97.5 GT:PL:GQ 1/1:75,63,0,80,44,74:94 chr2 158655962 . G C 123 . DP=66;VDB=0.0244;AF1=0.5;AC1=1;DP4=25,16,15,9;MQ=59;FQ=126;PV4=1,8.9e-14,0.35,0.46 GT:PL:GQ 0/1:153,0,255:99 chr2 158851803 . G C 225 . DP=58;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,21,6,27;MQ=60;FQ=223;PV4=0.72,0.18,1,0.45 GT:PL:GQ 0/1:255,0,251:99 chr2 158978178 . C G 180 . DP=25;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,24;MQ=60;FQ=-99 GT:PL:GQ 1/1:213,72,0:99 chr2 159028800 . A G 34.5 . DP=4;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:67,12,0:21 chr2 159077019 . A C 17.1 . DP=17;VDB=0.0025;AF1=0.5;AC1=1;DP4=3,1,13,0;MQ=59;FQ=20.1;PV4=0.24,7.9e-08,1,1 GT:PL:GQ 0/1:47,0,76:50 chr2 159166069 . T C 147 . DP=64;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,4,58;MQ=59;FQ=-214 GT:PL:GQ 1/1:180,187,0:99 chr2 159195225 . T G 28 . DP=7;VDB=0.0003;AF1=0.5001;AC1=1;DP4=2,0,5,0;MQ=60;FQ=6.97;PV4=1,0.028,1,1 GT:PL:GQ 0/1:58,0,33:36 chr2 159195562 . A G 78 . DP=35;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,13,5,9;MQ=60;FQ=81;PV4=1,2.3e-19,1,0.32 GT:PL:GQ 0/1:108,0,255:99 chr2 159434492 . G A 16.1 . DP=3;VDB=0.0199;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:48,9,0:15 chr2 159434500 . A G 8.64 . DP=4;VDB=0.0171;AF1=0.5;AC1=1;DP4=2,0,1,1;MQ=60;FQ=11.3;PV4=1,0.044,1,0.15 GT:PL:GQ 0/1:38,0,60:40 chr2 159434727 . T G 101 . DP=26;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,6,5,8;MQ=60;FQ=104;PV4=0.7,1.4e-15,1,1 GT:PL:GQ 0/1:131,0,251:99 chr2 159434802 . ATCTCTCT ATCTCT 68.5 . INDEL;DP=7;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=71.5;PV4=1,0.00075,1,1 GT:PL:GQ 0/1:106,0,131:99 chr2 159530651 . A T 55 . DP=23;VDB=0.0081;AF1=0.5;AC1=1;DP4=3,8,2,10;MQ=60;FQ=58;PV4=0.64,1.3e-11,1,0.45 GT:PL:GQ 0/1:85,0,212:88 chr2 159534874 . C T 9.31 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr2 159651973 . G A 190 . DP=84;VDB=0.0322;AF1=0.5;AC1=1;DP4=26,14,22,20;MQ=59;FQ=193;PV4=0.27,1.9e-15,1,1 GT:PL:GQ 0/1:220,0,255:99 chr2 159663599 . T C 176 . DP=54;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,12,12,16;MQ=60;FQ=179;PV4=0.78,5e-15,1,1 GT:PL:GQ 0/1:206,0,255:99 chr2 159663616 . G A 225 . DP=51;VDB=0.0393;AF1=0.5;AC1=1;DP4=11,18,10,11;MQ=60;FQ=225;PV4=0.57,1,1,0.22 GT:PL:GQ 0/1:255,0,255:99 chr2 159672168 . G A 96 . DP=44;VDB=0.0384;AF1=0.5;AC1=1;DP4=23,2,12,4;MQ=59;FQ=99;PV4=0.19,1.4e-15,1,0.073 GT:PL:GQ 0/1:126,0,245:99 chr2 159672252 . G A 225 . DP=76;VDB=0.0393;AF1=0.5;AC1=1;DP4=25,25,15,11;MQ=59;FQ=225;PV4=0.63,0.00048,1,0.024 GT:PL:GQ 0/1:255,0,255:99 chr2 159672442 . G A 73 . DP=17;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,15;MQ=60;FQ=-72 GT:PL:GQ 1/1:106,45,0:87 chr2 159954175 . C T 167 . DP=38;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,24,13;MQ=60;FQ=-138 GT:PL:GQ 1/1:200,111,0:99 chr2 160019863 . A G 191 . DP=40;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,17,23;MQ=59;FQ=-147 GT:PL:GQ 1/1:224,120,0:99 chr2 160033174 . A G 27 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:59,9,0:16 chr2 160035195 . C T 222 . DP=116;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,39,74;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 160035207 . T C 222 . DP=104;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,38,62;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 160073895 . G C 8.64 . DP=8;VDB=0.0082;AF1=0.5;AC1=1;DP4=3,1,4,0;MQ=60;FQ=11.3;PV4=1,4.6e-05,1,1 GT:PL:GQ 0/1:38,0,114:40 chr2 160075886 . GCCC GCCCC 217 . INDEL;DP=124;VDB=0.0380;AF1=0.5;AC1=1;DP4=31,34,22,33;MQ=59;FQ=217;PV4=0.46,1,0.23,1 GT:PL:GQ 0/1:255,0,255:99 chr2 160076026 . C G 51 . DP=21;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,10,0,11;MQ=59;FQ=54;PV4=1,1.2e-11,0.18,1 GT:PL:GQ 0/1:81,0,159:84 chr2 160076077 . T A 79 . DP=10;VDB=0.0066;AF1=0.5;AC1=1;DP4=3,1,6,0;MQ=60;FQ=69.7;PV4=0.4,0.24,1,0.22 GT:PL:GQ 0/1:109,0,97:99 chr2 160082354 . C T 222 . DP=77;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,19,54;MQ=59;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr2 160082364 . A G 225 . DP=68;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,25,7,28;MQ=59;FQ=225;PV4=1,0.23,0.087,1 GT:PL:GQ 0/1:255,0,255:99 chr2 160082384 . T A 225 . DP=49;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,18,6,20;MQ=60;FQ=219;PV4=0.71,0.01,1,1 GT:PL:GQ 0/1:255,0,247:99 chr2 160084224 . G A 192 . DP=13;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:225,39,0:75 chr2 160084263 . A G 98 . DP=15;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,13,1;MQ=60;FQ=-69 GT:PL:GQ 1/1:131,42,0:81 chr2 160084473 . A C 7.8 . DP=6;VDB=0.0329;AF1=0.5;AC1=1;DP4=0,2,1,2;MQ=60;FQ=10.4;PV4=1,0.011,1,0.25 GT:PL:GQ 0/1:37,0,57:39 chr2 160086692 . A G 142 . DP=97;VDB=0.0399;AF1=0.5;AC1=1;DP4=28,26,23,19;MQ=60;FQ=145;PV4=0.84,5.9e-26,0.13,0.12 GT:PL:GQ 0/1:172,0,255:99 chr2 160087535 . T G 222 . DP=69;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,5,62;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr2 160112881 . G T 225 . DP=53;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,20,7,19;MQ=60;FQ=225;PV4=1,0.15,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 160116281 . A G 225 . DP=29;VDB=0.0164;AF1=0.5;AC1=1;DP4=9,4,6,10;MQ=59;FQ=207;PV4=0.14,1,1,1 GT:PL:GQ 0/1:255,0,234:99 chr2 160132196 . ACCCCCCC ACCCCCCCC 50.5 . INDEL;DP=9;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,4,5;MQ=60;FQ=-61.5 GT:PL:GQ 1/1:91,27,0:51 chr2 160136337 . G A 181 . DP=22;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,16,6;MQ=60;FQ=-93 GT:PL:GQ 1/1:214,66,0:99 chr2 160176943 . A C 91 . DP=14;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,1,13;MQ=60;FQ=-69 GT:PL:GQ 1/1:124,42,0:81 chr2 160203934 . A C,T 58 . DP=23;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,22,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:158,106,67,109,0,82:75 chr2 160231108 . A G 125 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:158,15,0:27 chr2 160239378 . A G 9.52 . DP=16;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,9,0,7;MQ=60;FQ=12.3;PV4=1,5.6e-08,1,1 GT:PL:GQ 0/1:39,0,147:41 chr2 160261721 . T C 11.3 . DP=3;VDB=0.0163;AF1=0.5002;AC1=1;DP4=0,1,0,2;MQ=60;FQ=4.56;PV4=1,0.33,1,0.46 GT:PL:GQ 0/1:41,0,30:33 chr2 160285660 . T A 69 . DP=35;VDB=0.0271;AF1=0.5;AC1=1;DP4=14,10,7,4;MQ=60;FQ=72;PV4=1,3.7e-12,1,1 GT:PL:GQ 0/1:99,0,255:99 chr2 160304741 . A T 7.8 . DP=23;VDB=0.0099;AF1=0.5;AC1=1;DP4=10,1,12,0;MQ=60;FQ=10.4;PV4=0.48,7.6e-18,1,1 GT:PL:GQ 0/1:37,0,188:39 chr2 160585740 . C A 54.3 . DP=5;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:87,15,0:27 chr2 160604812 . C T 197 . DP=64;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,25,37;MQ=60;FQ=-214 GT:PL:GQ 1/1:230,187,0:99 chr2 160605268 . T C 111 . DP=28;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,6,22;MQ=60;FQ=-111 GT:PL:GQ 1/1:144,84,0:99 chr2 160637324 . A G 155 . DP=77;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,61,11;MQ=60;FQ=-244 GT:PL:GQ 1/1:188,217,0:99 chr2 160639970 . T C 222 . DP=27;VDB=0.0399;AF1=1;AC1=2;DP4=0,1,2,24;MQ=57;FQ=-79;PV4=1,0.29,1,0.2 GT:PL:GQ 1/1:255,52,0:99 chr2 160654524 . G T 104 . DP=9;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:137,27,0:51 chr2 160663678 . T C 222 . DP=23;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,3,20;MQ=58;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr2 160676427 . C A 180 . DP=29;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,5,22;MQ=60;FQ=-108 GT:PL:GQ 1/1:213,81,0:99 chr2 160676445 . ATTTTTT ATTTTTTT 34.5 . INDEL;DP=20;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,0,17;MQ=60;FQ=-85.5 GT:PL:GQ 1/1:75,51,0:82 chr2 160688351 . C T 32.1 . DP=7;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:65,18,0:33 chr2 160691978 . G A 20 . DP=32;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,0,12,0;MQ=60;FQ=23;PV4=1,4.3e-15,1,0.34 GT:PL:GQ 0/1:50,0,181:53 chr2 160698700 . A C 88 . DP=14;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:121,27,0:51 chr2 160708645 . C G 180 . DP=11;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:213,30,0:57 chr2 160710922 . T C 144 . DP=15;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,12,3;MQ=60;FQ=-72 GT:PL:GQ 1/1:177,45,0:87 chr2 160711556 . T G 220 . DP=55;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,10,44;MQ=60;FQ=-190 GT:PL:GQ 1/1:253,163,0:99 chr2 160728901 . A G 44 . DP=31;VDB=0.0081;AF1=0.5;AC1=1;DP4=19,0,12,0;MQ=60;FQ=47;PV4=1,1.9e-09,1,1 GT:PL:GQ 0/1:74,0,184:77 chr2 160729134 . A C 189 . DP=33;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,33;MQ=60;FQ=-126 GT:PL:GQ 1/1:222,99,0:99 chr2 160737495 . A C 80.5 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:113,12,0:21 chr2 160737560 . G T 176 . DP=41;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,37,4;MQ=60;FQ=-150 GT:PL:GQ 1/1:209,123,0:99 chr2 160805993 . C G 66.1 . DP=9;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:99,21,0:39 chr2 160807742 . A T 70.1 . DP=10;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-48 GT:PL:GQ 1/1:103,21,0:39 chr2 160808075 . C T 153 . DP=20;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,3,15;MQ=60;FQ=-81 GT:PL:GQ 1/1:186,54,0:99 chr2 160833188 . A G 222 . DP=29;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,21,5;MQ=59;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr2 160872989 . GGTG GG 60.5 . INDEL;DP=16;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-55.5 GT:PL:GQ 1/1:101,21,0:39 chr2 160873006 . ag aGGg 153 . INDEL;DP=32;VDB=0.0099;AF1=0.5;AC1=1;DP4=14,1,14,1;MQ=55;FQ=150;PV4=1,1,0.036,1 GT:PL:GQ 0/1:191,0,185:99 chr2 160873021 . G A 143 . DP=46;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,37,4;MQ=57;FQ=-150 GT:PL:GQ 1/1:176,123,0:99 chr2 160873270 . A G 179 . DP=29;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,28;MQ=57;FQ=-111 GT:PL:GQ 1/1:212,84,0:99 chr2 160873294 . TAAAAAAAA TAAAAAAAAA 4.5 . INDEL;DP=12;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:43,18,0:17 chr2 160876827 . A G 14.9 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:46,6,0:10 chr2 160898779 . C T 42 . DP=12;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,4,0,7;MQ=60;FQ=45;PV4=0.42,0.00019,1,1 GT:PL:GQ 0/1:72,0,119:75 chr2 160901353 . C T 137 . DP=79;VDB=0.0298;AF1=0.5;AC1=1;DP4=25,21,21,11;MQ=60;FQ=140;PV4=0.36,3.9e-21,1,1 GT:PL:GQ 0/1:167,0,255:99 chr2 160918984 . T A 63.5 . DP=5;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,2,2;MQ=60;FQ=-39 GT:PL:GQ 1/1:96,12,0:21 chr2 160958349 . GAAAAAAAAAAAA GAAAAAAAAAA,GAAAAAAAAA 61.5 . INDEL;DP=14;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,5,5;MQ=58;FQ=-61.5 GT:PL:GQ 1/1:102,27,0,90,5,87:51 chr2 160994764 . A G 43.5 . DP=11;VDB=0.0066;AF1=0.8294;AC1=1;DP4=0,1,0,9;MQ=60;FQ=-26;PV4=1,0.011,1,1 GT:PL:GQ 0/1:72,0,1:4 chr2 161028992 . T C 57 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:89,9,0:16 chr2 161051853 . A G 157 . DP=39;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,34,5;MQ=60;FQ=-144 GT:PL:GQ 1/1:190,117,0:99 chr2 161797513 . A G 183 . DP=52;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,21,27;MQ=60;FQ=-171 GT:PL:GQ 1/1:216,144,0:99 chr2 162059969 . A T 96 . DP=85;VDB=0.0392;AF1=0.5;AC1=1;DP4=29,13,32,6;MQ=59;FQ=99;PV4=0.12,1.3e-40,0.25,1 GT:PL:GQ 0/1:126,0,255:99 chr2 162072738 . A G 80 . DP=30;VDB=0.0019;AF1=0.5;AC1=1;DP4=9,2,18,1;MQ=60;FQ=83;PV4=0.54,2.2e-14,1,1 GT:PL:GQ 0/1:110,0,190:99 chr2 162091836 . T C 85 . DP=24;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,18,3;MQ=60;FQ=-90 GT:PL:GQ 1/1:118,63,0:99 chr2 162175290 . T C 134 . DP=36;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,25,8;MQ=59;FQ=-126 GT:PL:GQ 1/1:167,99,0:99 chr2 162224193 . GTTTTT GTTTTTT 159 . INDEL;DP=36;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,20,16;MQ=60;FQ=-143 GT:PL:GQ 1/1:200,108,0:99 chr2 162247772 . C T 53 . DP=19;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,5,1,10;MQ=58;FQ=56;PV4=0.26,1.8e-06,0.11,1 GT:PL:GQ 0/1:83,0,172:86 chr2 162274607 . atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt atgtgtgtgtgtgtgtgtgtgtgtgtgtgt 16.3 . INDEL;DP=2;VDB=0.0182;AF1=1;AC1=2;DP4=0,0,2,0;MQ=47;FQ=-40.5 GT:PL:GQ 1/1:55,6,0:10 chr2 162280748 . G A 84 . DP=23;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,10,2,9;MQ=60;FQ=84;PV4=0.48,0.031,1,1 GT:PL:GQ 0/1:114,0,114:99 chr2 162696255 . G A 126 . DP=35;VDB=0.0271;AF1=0.5;AC1=1;DP4=19,1,15,0;MQ=60;FQ=129;PV4=1,0.1,1,0.47 GT:PL:GQ 0/1:156,0,213:99 chr2 162696414 . C T 225 . DP=110;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,36,16,34;MQ=60;FQ=225;PV4=0.84,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 162711682 . A C 78 . DP=30;VDB=0.0019;AF1=0.5;AC1=1;DP4=1,15,2,11;MQ=59;FQ=81;PV4=0.57,2.1e-13,1,0.49 GT:PL:GQ 0/1:108,0,207:99 chr2 162738781 . T C 25.8 . DP=2;VDB=0.0129;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:57,6,0:10 chr2 162757381 . TAAAACAAAACAAAACA TAAAACAAAACA 217 . INDEL;DP=25;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,2,12,2;MQ=57;FQ=217;PV4=1,2.4e-05,0.064,1 GT:PL:GQ 0/1:255,0,255:99 chr2 162821515 . G A 44 . DP=9;VDB=0.0070;AF1=0.5;AC1=1;DP4=6,0,3,0;MQ=60;FQ=47;PV4=1,1,1,1 GT:PL:GQ 0/1:74,0,131:77 chr2 162890175 . T C 192 . DP=30;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,13,5,7;MQ=59;FQ=187;PV4=0.19,0.32,1,1 GT:PL:GQ 0/1:222,0,215:99 chr2 162890217 . G A 116 . DP=10;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,4,2,4;MQ=60;FQ=70;PV4=0.47,0.066,1,0.089 GT:PL:GQ 0/1:146,0,97:99 chr2 162891848 . C T 183 . DP=24;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,10,2,10;MQ=59;FQ=159;PV4=1,1,0.18,1 GT:PL:GQ 0/1:213,0,186:99 chr2 162894766 . A G 4.13 . DP=5;VDB=0.0180;AF1=0.5003;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-3.64;PV4=1,0.0033,1,1 GT:PL:GQ 0/1:32,0,27:29 chr2 162904013 . T C 34 . DP=15;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,8,0,6;MQ=60;FQ=37;PV4=1,2.1e-08,1,0.24 GT:PL:GQ 0/1:64,0,151:67 chr2 163051415 . C T 17.1 . DP=3;VDB=0.0098;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:49,9,0:15 chr2 163124051 . C T 52 . DP=51;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,24,3,16;MQ=60;FQ=55;PV4=1,1.9e-25,1,0.22 GT:PL:GQ 0/1:82,0,255:85 chr2 163128824 . T C 222 . DP=66;VDB=0.0365;AF1=1;AC1=2;DP4=1,1,40,23;MQ=60;FQ=-166;PV4=1,1,1,1 GT:PL:GQ 1/1:255,139,0:99 chr2 163208893 . T G 162 . DP=41;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,10,8,19;MQ=59;FQ=165;PV4=1,1.5e-13,1,1 GT:PL:GQ 0/1:192,0,216:99 chr2 163694878 . C G 4.77 . DP=5;VDB=0.0080;AF1=0.4999;AC1=1;DP4=2,1,2,0;MQ=60;FQ=6.99;PV4=1,0.04,1,0.022 GT:PL:GQ 0/1:33,0,87:33 chr2 163694886 . G A 19.1 . DP=6;VDB=0.0146;AF1=0.5;AC1=1;DP4=2,1,2,1;MQ=60;FQ=22;PV4=1,0.004,1,0.077 GT:PL:GQ 0/1:49,0,89:52 chr2 165349459 . G A 52 . DP=10;VDB=0.0004;AF1=0.5;AC1=1;DP4=4,0,6,0;MQ=60;FQ=54.5;PV4=1,0.00011,1,1 GT:PL:GQ 0/1:82,0,91:84 chr2 165353712 . C T 225 . DP=172;VDB=0.0399;AF1=0.5;AC1=1;DP4=44,57,25,40;MQ=60;FQ=225;PV4=0.52,0.5,0.38,0.41 GT:PL:GQ 0/1:255,0,255:99 chr2 165424837 . A G 111 . DP=96;VDB=0.0345;AF1=0.5;AC1=1;DP4=31,14,39,12;MQ=60;FQ=114;PV4=0.49,9.8e-41,1,1 GT:PL:GQ 0/1:141,0,255:99 chr2 165476253 . A T 86 . DP=99;VDB=0.0365;AF1=0.5;AC1=1;DP4=39,13,30,15;MQ=60;FQ=89;PV4=0.38,2.5e-49,0.14,0.23 GT:PL:GQ 0/1:116,0,255:99 chr2 165477836 . G A 13.2 . DP=7;VDB=0.0218;AF1=0.5;AC1=1;DP4=1,2,0,3;MQ=60;FQ=16.1;PV4=1,0.0031,1,1 GT:PL:GQ 0/1:43,0,88:46 chr2 165551404 . G A 93 . DP=49;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,6,22,2;MQ=60;FQ=96;PV4=0.14,1.5e-25,0.17,1 GT:PL:GQ 0/1:123,0,255:99 chr2 165557318 . C T 123 . DP=9;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:156,21,0:39 chr2 165578581 . A G 221 . DP=67;VDB=0.0399;AF1=0.5;AC1=1;DP4=29,8,21,5;MQ=60;FQ=223;PV4=1,0.44,1,0.12 GT:PL:GQ 0/1:251,0,255:99 chr2 165579065 . T G 22 . DP=8;VDB=0.0254;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=25;PV4=1,0.00036,1,1 GT:PL:GQ 0/1:52,0,98:55 chr2 165584407 . C T 28 . DP=3;VDB=0.0186;AF1=0.5004;AC1=1;DP4=1,0,2,0;MQ=60;FQ=3.54;PV4=1,0.33,1,1 GT:PL:GQ 0/1:58,0,28:31 chr2 165586466 . T C 67 . DP=31;VDB=0.0164;AF1=0.5;AC1=1;DP4=11,2,12,3;MQ=59;FQ=70;PV4=1,4e-12,0.18,1 GT:PL:GQ 0/1:97,0,212:99 chr2 165586652 . C T 62 . DP=32;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,14,2,13;MQ=60;FQ=65;PV4=1,2.7e-17,1,1 GT:PL:GQ 0/1:92,0,231:95 chr2 165586693 . T C 121 . DP=16;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,7,0,8;MQ=60;FQ=109;PV4=1,1,1,1 GT:PL:GQ 0/1:151,0,136:99 chr2 165586705 . T G 34 . DP=11;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=60;FQ=37;PV4=1,3e-05,1,0.43 GT:PL:GQ 0/1:64,0,111:67 chr2 165630414 . A T 29 . DP=33;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,21,0,11;MQ=60;FQ=32;PV4=1,2.2e-21,1,0.11 GT:PL:GQ 0/1:59,0,187:62 chr2 165636332 . T C 142 . DP=39;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,11,7,12;MQ=60;FQ=145;PV4=1,3.1e-13,1,1 GT:PL:GQ 0/1:172,0,255:99 chr2 165657185 . G A 17.1 . DP=8;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,2,2,2;MQ=57;FQ=20.1;PV4=1,0.0002,0.22,1 GT:PL:GQ 0/1:47,0,88:50 chr2 165698715 . AGG AGGG 78 . INDEL;DP=4;VDB=0.0041;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:118,12,0:21 chr2 165793968 . G A 125 . DP=50;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,20,4,20;MQ=60;FQ=128;PV4=1,7.6e-16,1,0.39 GT:PL:GQ 0/1:155,0,255:99 chr2 165809138 . Atgtgtgtgtgtgtgtgtgt ATGtgtgtgtgtgtgtgtgtgt 88.5 . INDEL;DP=4;VDB=0.0033;AF1=0.5002;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-5.12;PV4=1,1,1,1 GT:PL:GQ 0/1:126,0,31:34 chr2 165996107 . T A 225 . DP=78;VDB=0.0271;AF1=0.5;AC1=1;DP4=14,34,5,25;MQ=59;FQ=225;PV4=0.28,0.067,0.37,1 GT:PL:GQ 0/1:255,0,255:99 chr2 166012203 . C T 30 . DP=15;VDB=0.0053;AF1=0.5;AC1=1;DP4=5,2,7,0;MQ=58;FQ=33;PV4=0.46,1.1e-06,1,1 GT:PL:GQ 0/1:60,0,153:63 chr2 166025403 . CAAAAAA CAAAAAAA 8.18 . INDEL;DP=17;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,8,0,9;MQ=60;FQ=6.21;PV4=1,1,1,0.36 GT:PL:GQ 0/1:45,0,41:43 chr2 166153499 . A G 32 . DP=5;VDB=0.0122;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=26.4;PV4=1,1,1,1 GT:PL:GQ 0/1:62,0,54:56 chr2 166170127 . T C 210 . DP=55;VDB=0.0298;AF1=0.5;AC1=1;DP4=27,7,17,4;MQ=60;FQ=213;PV4=1,0.12,1,1 GT:PL:GQ 0/1:240,0,255:99 chr2 166172317 . A G 31 . DP=24;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,11,1,9;MQ=60;FQ=34;PV4=0.48,4.2e-08,1,1 GT:PL:GQ 0/1:61,0,163:64 chr2 166179779 . T C 225 . DP=99;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,24,25,30;MQ=60;FQ=225;PV4=1,0.063,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 166183273 . A G 57 . DP=6;VDB=0.0022;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=28;PV4=1,0.22,1,0.32 GT:PL:GQ 0/1:87,0,55:58 chr2 166221582 . C T 20 . DP=4;VDB=0.0106;AF1=0.5;AC1=1;DP4=1,1,2,0;MQ=60;FQ=22.3;PV4=1,0.15,1,0.49 GT:PL:GQ 0/1:50,0,57:52 chr2 166221883 . gtatctatctatctatctatctatcta gtatctatctatctatctatcta 37.5 . INDEL;DP=14;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,1,0,2;MQ=52;FQ=16.6;PV4=1,0.012,0.33,1 GT:PL:GQ 0/1:75,0,51:54 chr2 166224047 . G A 26 . DP=5;VDB=0.0060;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=24.9;PV4=1,1,1,1 GT:PL:GQ 0/1:56,0,54:55 chr2 166229922 . T C 192 . DP=9;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,2,7;MQ=60;FQ=-54 GT:PL:GQ 1/1:225,27,0:51 chr2 166245230 . T A 225 . DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,12,17,13;MQ=51;FQ=225;PV4=0.8,0.056,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 166514165 . C G 149 . DP=21;VDB=0.0053;AF1=0.5;AC1=1;DP4=10,1,8,1;MQ=60;FQ=152;PV4=1,1,1,1 GT:PL:GQ 0/1:179,0,193:99 chr2 166535918 . C T 156 . DP=65;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,16,11,17;MQ=60;FQ=159;PV4=0.32,9e-20,1,0.41 GT:PL:GQ 0/1:186,0,255:99 chr2 166611086 . C T 109 . DP=48;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,10,18,7;MQ=59;FQ=112;PV4=0.37,1.5e-22,1,1 GT:PL:GQ 0/1:139,0,255:99 chr2 166615422 . T C 86 . DP=10;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,5,0,5;MQ=60;FQ=86;PV4=1,0.39,1,1 GT:PL:GQ 0/1:116,0,116:99 chr2 166618262 . C T 42 . DP=14;VDB=0.0164;AF1=0.5;AC1=1;DP4=8,0,5,1;MQ=60;FQ=45;PV4=0.43,1e-06,1,0.077 GT:PL:GQ 0/1:72,0,147:75 chr2 166621354 . T C 162 . DP=14;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:195,39,0:75 chr2 166626606 . G A 97 . DP=36;VDB=0.0216;AF1=0.5;AC1=1;DP4=13,2,18,2;MQ=60;FQ=100;PV4=1,1.2e-09,1,1 GT:PL:GQ 0/1:127,0,208:99 chr2 166770120 . A G 73 . DP=31;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,6,10,10;MQ=59;FQ=76;PV4=0.45,7.8e-13,1,1 GT:PL:GQ 0/1:103,0,162:99 chr2 166773971 . G A 21 . DP=10;VDB=0.0126;AF1=0.5;AC1=1;DP4=0,6,1,3;MQ=60;FQ=24;PV4=0.4,8.2e-07,1,1 GT:PL:GQ 0/1:51,0,133:54 chr2 166781242 . TAAAA TAAAAA 24.7 . INDEL;DP=6;VDB=0.0066;AF1=0.5263;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-24.5;PV4=1,1,1,0.21 GT:PL:GQ 0/1:62,0,10:13 chr2 166788336 . T C 222 . DP=47;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,30;MQ=60;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr2 166797646 . C T 225 . DP=84;VDB=0.0190;AF1=0.5;AC1=1;DP4=27,21,18,18;MQ=60;FQ=225;PV4=0.66,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 166799893 . G A 112 . DP=20;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,2,17;MQ=60;FQ=-84 GT:PL:GQ 1/1:145,57,0:99 chr2 166810373 . A G 41 . DP=8;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:74,24,0:45 chr2 166892444 . taaaaaaaaaaaaaaa taaaaaaaaaaaa 20 . INDEL;DP=4;VDB=0.0126;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:60,12,0:21 chr2 166892788 . C T 222 . DP=57;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,21,32;MQ=59;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr2 166893081 . G A 190 . DP=11;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:223,33,0:63 chr2 166894230 . T C 222 . DP=36;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,28,5;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr2 166895913 . CTTTTTTTTTTTTTTTTT CTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTT 18.7 . INDEL;DP=17;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,10,1;MQ=56;FQ=-52.5 GT:PL:GQ 1/1:75,34,16,68,0,52:30 chr2 166896143 . T G 222 . DP=19;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,13;MQ=59;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr2 166897864 . A G 192 . DP=22;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,9,13;MQ=59;FQ=-93 GT:PL:GQ 1/1:225,66,0:99 chr2 166900606 . A C 29.5 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:62,12,0:21 chr2 166903188 . A C 105 . DP=26;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,2;MQ=60;FQ=-102 GT:PL:GQ 1/1:138,75,0:99 chr2 166903228 . C T 225 . DP=39;VDB=0.0393;AF1=0.5;AC1=1;DP4=16,3,13,6;MQ=60;FQ=225;PV4=0.45,0.28,1,0.18 GT:PL:GQ 0/1:255,0,255:99 chr2 166903445 . T C 222 . DP=69;VDB=0.0365;AF1=1;AC1=2;DP4=0,1,35,30;MQ=60;FQ=-187;PV4=0.47,0.25,1,1 GT:PL:GQ 1/1:255,160,0:99 chr2 166903494 . CAAAAA CAAA 217 . INDEL;DP=59;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,14,10,22;MQ=60;FQ=217;PV4=0.58,0.0096,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 166904346 . G A 157 . DP=44;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,3,40;MQ=59;FQ=-156 GT:PL:GQ 1/1:190,129,0:99 chr2 166905375 . A G 150 . DP=31;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,8,11,1;MQ=59;FQ=153;PV4=0.049,1,1,1 GT:PL:GQ 0/1:180,0,255:99 chr2 166905480 . G A 222 . DP=24;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,19;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr2 166909544 . C T 62 . DP=50;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,18,2,26;MQ=60;FQ=65;PV4=0.64,2.4e-22,0.2,1 GT:PL:GQ 0/1:92,0,241:95 chr2 166909559 . C A 127 . DP=28;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,2,26;MQ=59;FQ=-111 GT:PL:GQ 1/1:160,84,0:99 chr2 166930214 . T A 132 . DP=9;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:165,24,0:45 chr2 167056337 . C A 24 . DP=21;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,10,1,5;MQ=57;FQ=27;PV4=0.62,4.3e-05,0.049,1 GT:PL:GQ 0/1:54,0,255:57 chr2 167060449 . A T 63 . DP=9;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:96,27,0:51 chr2 167085124 . T G 156 . DP=12;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,12,0;MQ=56;FQ=-63 GT:PL:GQ 1/1:189,36,0:69 chr2 167085141 . CTT C 210 . INDEL;DP=32;VDB=0.0019;AF1=0.5;AC1=1;DP4=18,0,14,0;MQ=58;FQ=213;PV4=1,1e-30,0.02,0.4 GT:PL:GQ 0/1:248,0,255:99 chr2 167089976 . T C 116 . DP=11;VDB=0.0033;AF1=0.5;AC1=1;DP4=3,3,3,2;MQ=60;FQ=119;PV4=1,1,1,1 GT:PL:GQ 0/1:146,0,164:99 chr2 167090042 . G A 26.5 . DP=5;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:59,12,0:21 chr2 167099158 . A G 222 . DP=67;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,6,61;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr2 167133929 . G T 3.01 . DP=5;VDB=0.0040;AF1=0.4998;AC1=1;DP4=0,2,0,3;MQ=56;FQ=4.77;PV4=1,6.9e-05,0.25,0.12 GT:PL:GQ 0/1:30,0,57:28 chr2 167137119 . G A 82 . DP=31;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,6,8,11;MQ=59;FQ=85;PV4=0.72,1e-16,1,1 GT:PL:GQ 0/1:112,0,221:99 chr2 167137120 . C T 186 . DP=32;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,11,6,6;MQ=59;FQ=189;PV4=0.72,0.19,0.11,0.44 GT:PL:GQ 0/1:216,0,255:99 chr2 167138389 . CTT CTTT 83.5 . INDEL;DP=22;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,12,0,8;MQ=56;FQ=86.2;PV4=1,1,0.01,0.0086 GT:PL:GQ 0/1:121,0,133:99 chr2 167140955 . G A 188 . DP=50;VDB=0.0118;AF1=0.5;AC1=1;DP4=18,4,27,1;MQ=60;FQ=191;PV4=0.16,1,1,1 GT:PL:GQ 0/1:218,0,255:99 chr2 167144974 . A T 66 . DP=11;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,0,5,0;MQ=60;FQ=68.7;PV4=1,1,1,0.087 GT:PL:GQ 0/1:96,0,107:99 chr2 167149693 . G A 146 . DP=17;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,14,3;MQ=60;FQ=-78 GT:PL:GQ 1/1:179,51,0:99 chr2 167149700 . T C 143 . DP=23;VDB=0.0066;AF1=0.5;AC1=1;DP4=9,3,8,1;MQ=60;FQ=146;PV4=0.6,1,1,1 GT:PL:GQ 0/1:173,0,224:99 chr2 167151290 . A G 40 . DP=7;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,2,0,5;MQ=60;FQ=23;PV4=1,0.003,1,1 GT:PL:GQ 0/1:70,0,50:53 chr2 167162277 . G A 225 . DP=81;VDB=0.0322;AF1=0.5;AC1=1;DP4=24,11,28,14;MQ=60;FQ=225;PV4=1,0.039,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 167163043 . T C 183 . DP=35;VDB=0.0271;AF1=0.5;AC1=1;DP4=18,4,8,4;MQ=59;FQ=186;PV4=0.41,1,1,1 GT:PL:GQ 0/1:213,0,240:99 chr2 167163199 . A T 26 . DP=14;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,6,0,6;MQ=60;FQ=29;PV4=1,0.0028,1,1 GT:PL:GQ 0/1:56,0,120:59 chr2 167168093 . C T 86 . DP=36;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,1,16,1;MQ=59;FQ=89;PV4=1,2.3e-10,1,1 GT:PL:GQ 0/1:116,0,195:99 chr2 167322522 . G A 54 . DP=24;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,11,2,10;MQ=60;FQ=57;PV4=1,5.8e-12,1,1 GT:PL:GQ 0/1:84,0,191:87 chr2 167328750 . C T 103 . DP=20;VDB=0.0099;AF1=0.5;AC1=1;DP4=9,1,10,0;MQ=60;FQ=106;PV4=1,0.0062,1,0.37 GT:PL:GQ 0/1:133,0,183:99 chr2 167334085 . G T 81 . DP=31;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,9,9,4;MQ=59;FQ=84;PV4=0.26,3.7e-13,1,1 GT:PL:GQ 0/1:111,0,255:99 chr2 168099738 . T C 225 . DP=121;VDB=0.0345;AF1=0.5;AC1=1;DP4=35,37,28,19;MQ=60;FQ=225;PV4=0.26,0.062,0.3,0.23 GT:PL:GQ 0/1:255,0,255:99 chr2 168099775 . C G 113 . DP=146;VDB=0.0345;AF1=0.5;AC1=1;DP4=45,39,37,22;MQ=60;FQ=116;PV4=0.31,7.9e-66,1,1 GT:PL:GQ 0/1:143,0,255:99 chr2 168099796 . T C 177 . DP=156;VDB=0.0400;AF1=0.5;AC1=1;DP4=40,40,43,28;MQ=60;FQ=180;PV4=0.25,2.5e-53,1,0.48 GT:PL:GQ 0/1:207,0,255:99 chr2 168102391 . C T 168 . DP=97;VDB=0.0393;AF1=0.5;AC1=1;DP4=13,23,21,36;MQ=60;FQ=171;PV4=1,1.4e-28,1,0.11 GT:PL:GQ 0/1:198,0,255:99 chr2 168102446 . A G 92 . DP=72;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,18,14,26;MQ=60;FQ=95;PV4=0.48,2.4e-33,1,0.22 GT:PL:GQ 0/1:122,0,255:99 chr2 168103304 . G A 225 . DP=166;VDB=0.0392;AF1=0.5;AC1=1;DP4=45,49,32,39;MQ=60;FQ=225;PV4=0.75,1,0.051,1 GT:PL:GQ 0/1:255,0,255:99 chr2 168103863 . G A 164 . DP=64;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,18,12,26;MQ=60;FQ=167;PV4=1,1.2e-25,0.21,0.36 GT:PL:GQ 0/1:194,0,255:99 chr2 168103925 . A G 154 . DP=46;VDB=0.0384;AF1=0.5;AC1=1;DP4=9,12,7,16;MQ=60;FQ=157;PV4=0.53,5.3e-19,1,0.39 GT:PL:GQ 0/1:184,0,255:99 chr2 168104199 . C T 225 . DP=64;VDB=0.0393;AF1=0.5;AC1=1;DP4=19,16,14,13;MQ=60;FQ=225;PV4=1,1,1,0.43 GT:PL:GQ 0/1:255,0,255:99 chr2 168104370 . A C 110 . DP=48;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,15,11,9;MQ=60;FQ=113;PV4=0.77,2.1e-20,1,1 GT:PL:GQ 0/1:140,0,255:99 chr2 168104627 . G A 107 . DP=83;VDB=0.0399;AF1=0.5;AC1=1;DP4=36,10,21,13;MQ=60;FQ=110;PV4=0.14,1.6e-27,1,0.22 GT:PL:GQ 0/1:137,0,255:99 chr2 168104988 . G T 71 . DP=67;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,28,8,17;MQ=60;FQ=74;PV4=1,9.5e-19,1,1 GT:PL:GQ 0/1:101,0,255:99 chr2 168106085 . G A 144 . DP=49;VDB=0.0393;AF1=0.5;AC1=1;DP4=10,14,6,19;MQ=60;FQ=147;PV4=0.23,2e-18,1,0.12 GT:PL:GQ 0/1:174,0,255:99 chr2 168106246 . G A 128 . DP=102;VDB=0.0393;AF1=0.5;AC1=1;DP4=39,23,24,14;MQ=60;FQ=131;PV4=1,1.6e-34,1,1 GT:PL:GQ 0/1:158,0,255:99 chr2 168107155 . G A 101 . DP=179;VDB=0.0322;AF1=0.5;AC1=1;DP4=79,35,46,17;MQ=60;FQ=104;PV4=0.73,6.8e-56,1,1 GT:PL:GQ 0/1:131,0,255:99 chr2 168107491 . A G 225 . DP=85;VDB=0.0398;AF1=0.5;AC1=1;DP4=31,19,15,16;MQ=59;FQ=225;PV4=0.26,0.13,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 168108357 . A G 112 . DP=128;VDB=0.0365;AF1=0.5;AC1=1;DP4=31,28,33,27;MQ=60;FQ=115;PV4=0.85,1.6e-49,1,1 GT:PL:GQ 0/1:142,0,255:99 chr2 168115710 . T G 123 . DP=152;VDB=0.0392;AF1=0.5;AC1=1;DP4=43,28,50,25;MQ=60;FQ=126;PV4=0.49,1.8e-62,0.045,0.21 GT:PL:GQ 0/1:153,0,255:99 chr2 168115769 . G C 225 . DP=164;VDB=0.0298;AF1=0.5;AC1=1;DP4=39,33,53,36;MQ=60;FQ=225;PV4=0.52,0.19,0.19,1 GT:PL:GQ 0/1:255,0,255:99 chr2 168115797 . G C 225 . DP=154;VDB=0.0365;AF1=0.5;AC1=1;DP4=30,33,44,41;MQ=60;FQ=225;PV4=0.74,0.32,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 168812218 . C T 114 . DP=13;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,2,0,9;MQ=60;FQ=29;PV4=0.25,1,1,1 GT:PL:GQ 0/1:144,0,56:59 chr2 168931610 . G A 225 . DP=112;VDB=0.0380;AF1=0.5;AC1=1;DP4=37,21,35,17;MQ=60;FQ=225;PV4=0.84,0.24,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 168986154 . A G 222 . DP=72;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,19,49;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr2 168996775 . T C 86 . DP=31;VDB=0.0393;AF1=0.5;AC1=1;DP4=20,2,9,0;MQ=60;FQ=89;PV4=1,0.42,1,0.14 GT:PL:GQ 0/1:116,0,237:99 chr2 168997097 . A G 172 . DP=23;VDB=0.0099;AF1=0.5;AC1=1;DP4=9,3,9,2;MQ=60;FQ=175;PV4=1,0.09,1,0.16 GT:PL:GQ 0/1:202,0,243:99 chr2 169674764 . C G 77 . DP=21;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,7,6,3;MQ=60;FQ=80;PV4=0.39,9.4e-08,1,1 GT:PL:GQ 0/1:107,0,227:99 chr2 169674806 . G C 70 . DP=18;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,7,2,7;MQ=60;FQ=73;PV4=1,3.9e-10,1,1 GT:PL:GQ 0/1:100,0,193:99 chr2 169690729 . T C 59 . DP=44;VDB=0.0271;AF1=0.5;AC1=1;DP4=19,5,14,5;MQ=60;FQ=62;PV4=0.73,1.9e-17,1,1 GT:PL:GQ 0/1:89,0,255:92 chr2 169707428 . C T 225 . DP=104;VDB=0.0400;AF1=0.5;AC1=1;DP4=30,21,25,23;MQ=60;FQ=225;PV4=0.55,0.16,1,0.31 GT:PL:GQ 0/1:255,0,255:99 chr2 169707552 . A G 225 . DP=114;VDB=0.0398;AF1=0.5;AC1=1;DP4=21,30,27,36;MQ=60;FQ=225;PV4=1,0.039,1,0.15 GT:PL:GQ 0/1:255,0,255:99 chr2 169717541 . T C 19.1 . DP=33;VDB=0.0140;AF1=0.5;AC1=1;DP4=4,19,0,9;MQ=60;FQ=22;PV4=0.3,4e-14,1,1 GT:PL:GQ 0/1:49,0,255:52 chr2 169721377 . G A 99 . DP=93;VDB=0.0322;AF1=0.5;AC1=1;DP4=32,14,33,11;MQ=59;FQ=102;PV4=0.64,1.9e-33,1,1 GT:PL:GQ 0/1:129,0,255:99 chr2 169728069 . GAAAAAAAAAAAAAA GAAAAAAAAAAA 98.8 . INDEL;DP=33;VDB=0.0365;AF1=1;AC1=2;DP4=2,5,5,15;MQ=58;FQ=-48.5;PV4=1,1,0.2,1 GT:PL:GQ 1/1:139,14,0:25 chr2 169763148 . T C 222 . DP=175;VDB=0.0399;AF1=1;AC1=2;DP4=1,0,81,86;MQ=60;FQ=-282;PV4=0.49,1,0.46,1 GT:PL:GQ 1/1:255,255,0:99 chr2 169764176 . G C 222 . DP=56;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,32,24;MQ=59;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr2 169764546 . C G 225 . DP=191;VDB=0.0322;AF1=0.5;AC1=1;DP4=37,62,36,52;MQ=59;FQ=225;PV4=0.65,0.12,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 169789016 . T C 121 . DP=60;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,28,6,20;MQ=58;FQ=124;PV4=0.75,3.2e-18,1,0.27 GT:PL:GQ 0/1:151,0,255:99 chr2 169801488 . A G 39.1 . DP=6;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:72,18,0:33 chr2 169814655 . G T 33 . DP=17;VDB=0.0343;AF1=0.5;AC1=1;DP4=1,6,2,6;MQ=60;FQ=36;PV4=1,4e-07,1,1 GT:PL:GQ 0/1:63,0,154:66 chr2 169842809 . T C 59 . DP=5;VDB=0.0089;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=34;PV4=1,1,1,0.11 GT:PL:GQ 0/1:89,0,61:64 chr2 169952233 . T C 128 . DP=37;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,10,4,17;MQ=60;FQ=131;PV4=0.27,3.7e-15,1,1 GT:PL:GQ 0/1:158,0,255:99 chr2 169997051 . G A 191 . DP=37;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,30;MQ=60;FQ=-138 GT:PL:GQ 1/1:224,111,0:99 chr2 170003432 . T G 170 . DP=65;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,28,34;MQ=60;FQ=-214 GT:PL:GQ 1/1:203,187,0:99 chr2 170010985 . T C 206 . DP=58;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,38,17;MQ=60;FQ=-193 GT:PL:GQ 1/1:239,166,0:99 chr2 170025083 . A G 225 . DP=86;VDB=0.0322;AF1=0.5;AC1=1;DP4=23,15,31,16;MQ=60;FQ=225;PV4=0.65,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 170029800 . T C 89 . DP=46;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,24,3,14;MQ=59;FQ=92;PV4=1,6.1e-17,0.36,1 GT:PL:GQ 0/1:119,0,255:99 chr2 170032989 . C T 150 . DP=85;VDB=0.0392;AF1=0.5;AC1=1;DP4=34,6,40,5;MQ=60;FQ=153;PV4=0.75,5e-28,0.17,0.39 GT:PL:GQ 0/1:180,0,255:99 chr2 170063783 . T C 133 . DP=14;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,6,1,7;MQ=57;FQ=85;PV4=1,1,1,1 GT:PL:GQ 0/1:163,0,112:99 chr2 170082013 . A G 225 . DP=40;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,16,4,17;MQ=59;FQ=201;PV4=1,1,1,0.47 GT:PL:GQ 0/1:255,0,228:99 chr2 170088477 . T C 16.1 . DP=11;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,4,0,5;MQ=60;FQ=19.1;PV4=1,3.3e-06,1,0.44 GT:PL:GQ 0/1:46,0,98:49 chr2 170089824 . T C 41 . DP=29;VDB=0.0011;AF1=0.5;AC1=1;DP4=16,2,10,1;MQ=60;FQ=44;PV4=1,3.9e-13,1,0.13 GT:PL:GQ 0/1:71,0,240:74 chr2 170089851 . G A 159 . DP=59;VDB=0.0118;AF1=0.5;AC1=1;DP4=30,7,19,2;MQ=60;FQ=162;PV4=0.46,1,1,1 GT:PL:GQ 0/1:189,0,255:99 chr2 170089934 . C T 86 . DP=103;VDB=0.0322;AF1=0.5;AC1=1;DP4=30,33,20,18;MQ=59;FQ=89;PV4=0.68,6.8e-44,1,1 GT:PL:GQ 0/1:116,0,255:99 chr2 170092395 . A G 225 . DP=72;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,14,29,15;MQ=60;FQ=225;PV4=0.21,1,1,0.41 GT:PL:GQ 0/1:255,0,255:99 chr2 170096018 . G A 108 . DP=53;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,5,20,8;MQ=60;FQ=111;PV4=0.75,2.5e-22,1,1 GT:PL:GQ 0/1:138,0,255:99 chr2 170099446 . T G 164 . DP=138;VDB=0.0271;AF1=0.5;AC1=1;DP4=48,27,40,19;MQ=60;FQ=167;PV4=0.72,1.8e-35,1,1 GT:PL:GQ 0/1:194,0,255:99 chr2 170099473 . T C 149 . DP=156;VDB=0.0380;AF1=0.5;AC1=1;DP4=44,34,40,35;MQ=60;FQ=152;PV4=0.75,4.3e-60,0.49,0.38 GT:PL:GQ 0/1:179,0,255:99 chr2 170099895 . A C 16.1 . DP=76;VDB=0.0164;AF1=0.5;AC1=1;DP4=38,2,33,1;MQ=60;FQ=19.1;PV4=1,3.1e-31,1,1 GT:PL:GQ 0/1:46,0,245:49 chr2 170099899 . G A 25 . DP=85;VDB=0.0164;AF1=0.5;AC1=1;DP4=43,2,35,2;MQ=59;FQ=28;PV4=1,7.2e-50,1,1 GT:PL:GQ 0/1:55,0,248:58 chr2 170103336 . T C 173 . DP=96;VDB=0.0398;AF1=0.5;AC1=1;DP4=22,27,22,20;MQ=59;FQ=176;PV4=0.53,5.4e-24,0.063,0.26 GT:PL:GQ 0/1:203,0,255:99 chr2 170103351 . G T 103 . DP=98;VDB=0.0373;AF1=0.5;AC1=1;DP4=23,25,25,22;MQ=60;FQ=106;PV4=0.68,2.5e-36,0.49,0.26 GT:PL:GQ 0/1:133,0,255:99 chr2 170115588 . T C 179 . DP=177;VDB=0.0392;AF1=0.5;AC1=1;DP4=49,35,44,48;MQ=60;FQ=182;PV4=0.18,4.4e-47,0.088,1 GT:PL:GQ 0/1:209,0,255:99 chr2 170129528 . G A 172 . DP=72;VDB=0.0398;AF1=1;AC1=2;DP4=1,0,25,39;MQ=59;FQ=-194;PV4=0.4,0.0064,1,0.19 GT:PL:GQ 1/1:205,167,0:99 chr2 170129636 . A G 222 . DP=32;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,23;MQ=59;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr2 170134191 . G C 59.1 . DP=6;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:92,18,0:33 chr2 170139346 . C T 181 . DP=52;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,33,17;MQ=60;FQ=-178 GT:PL:GQ 1/1:214,151,0:99 chr2 170139594 . G A 77 . DP=33;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,13,1,16;MQ=60;FQ=80;PV4=0.59,2.6e-12,1,1 GT:PL:GQ 0/1:107,0,216:99 chr2 170139639 . A G 84 . DP=10;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:117,30,0:57 chr2 170163768 . T C 225 . DP=138;VDB=0.0380;AF1=0.5;AC1=1;DP4=39,29,36,28;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 170175334 . T C 144 . DP=47;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,6,13,10;MQ=59;FQ=147;PV4=0.53,9.1e-11,1,0.35 GT:PL:GQ 0/1:174,0,255:99 chr2 170218816 . T C 114 . DP=13;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:147,36,0:69 chr2 170218847 . C G 95 . DP=19;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,18,1;MQ=59;FQ=-84 GT:PL:GQ 1/1:128,57,0:99 chr2 170336024 . G C 222 . DP=43;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,24,17;MQ=60;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr2 170339003 . C A 48 . DP=9;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:81,27,0:51 chr2 170359758 . G C 41 . DP=24;VDB=0.0099;AF1=0.5;AC1=1;DP4=2,10,0,9;MQ=60;FQ=44;PV4=0.49,1.9e-07,1,1 GT:PL:GQ 0/1:71,0,216:74 chr2 170360765 . G C 62 . DP=34;VDB=0.0298;AF1=0.5;AC1=1;DP4=18,5,8,3;MQ=60;FQ=65;PV4=1,4.1e-13,1,1 GT:PL:GQ 0/1:92,0,255:95 chr2 170367099 . G A 225 . DP=37;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,4,12,8;MQ=60;FQ=222;PV4=0.32,0.24,1,1 GT:PL:GQ 0/1:255,0,250:99 chr2 170403030 . T C 225 . DP=55;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,16,13,15;MQ=59;FQ=225;PV4=0.59,0.29,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 170411693 . T C 149 . DP=33;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,8,9,10;MQ=60;FQ=152;PV4=1,4.2e-18,1,0.38 GT:PL:GQ 0/1:179,0,255:99 chr2 170413601 . A T 51 . DP=24;VDB=0.0118;AF1=0.5;AC1=1;DP4=12,0,11,0;MQ=60;FQ=54;PV4=1,2.6e-14,1,1 GT:PL:GQ 0/1:81,0,171:84 chr2 170488454 . A G 222 . DP=41;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,34;MQ=59;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr2 170492567 . A G 117 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:150,18,0:33 chr2 170492584 . T C 42 . DP=8;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:75,24,0:45 chr2 170493103 . T A 170 . DP=28;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,22,6;MQ=59;FQ=-111 GT:PL:GQ 1/1:203,84,0:99 chr2 170504672 . caaaaaaaaaaaaaaaaaaaaaaaaaaaa caaaaaaaaaaaa 107 . INDEL;DP=15;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,0,6,0;MQ=42;FQ=85.5;PV4=1,1,1,1 GT:PL:GQ 0/1:145,0,120:99 chr2 170505684 . G A 101 . DP=34;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,33,1;MQ=60;FQ=-129 GT:PL:GQ 1/1:134,102,0:99 chr2 170531572 . T C 50 . DP=15;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:83,30,0:57 chr2 170531614 . A G 28.8 . DP=2;VDB=0.0165;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:60,6,0:10 chr2 170550727 . G T 88 . DP=42;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,10,11,5;MQ=59;FQ=91;PV4=0.5,4.5e-12,0.13,1 GT:PL:GQ 0/1:118,0,255:99 chr2 170550839 . A G 212 . DP=24;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,6,17;MQ=60;FQ=-96 GT:PL:GQ 1/1:245,69,0:99 chr2 170592709 . A G 79 . DP=51;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,18,3,21;MQ=60;FQ=82;PV4=0.46,5.4e-27,1,1 GT:PL:GQ 0/1:109,0,255:99 chr2 170597835 . G T 42 . DP=13;VDB=0.0099;AF1=0.5;AC1=1;DP4=6,1,4,2;MQ=60;FQ=45;PV4=0.56,2.9e-06,1,1 GT:PL:GQ 0/1:72,0,158:75 chr2 170605981 . C T 222 . DP=45;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,33,9;MQ=59;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr2 170606293 . TAAAAAAA TAAAAAAAA 25.5 . INDEL;DP=42;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,16,9,8;MQ=59;FQ=22.3;PV4=0.033,1,0.15,1 GT:PL:GQ 0/1:63,0,58:60 chr2 170606658 . G A 53 . DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,2;MQ=42;FQ=-36 GT:PL:GQ 1/1:85,9,0:16 chr2 170606724 . A G 84.1 . DP=9;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,2,5;MQ=49;FQ=-48 GT:PL:GQ 1/1:117,21,0:39 chr2 170632896 . T C 200 . DP=31;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,6,14,2;MQ=57;FQ=203;PV4=0.11,1,1,1 GT:PL:GQ 0/1:230,0,247:99 chr2 170633023 . TA TAA 187 . INDEL;DP=37;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,13,5,8;MQ=57;FQ=190;PV4=1,1,0.0019,0.082 GT:PL:GQ 0/1:225,0,255:99 chr2 170633067 . G T 28 . DP=43;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,20,3,10;MQ=58;FQ=31;PV4=0.72,2.3e-12,0.021,0.038 GT:PL:GQ 0/1:58,0,255:61 chr2 170633103 . GAA GA 214 . INDEL;DP=32;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,9,23;MQ=57;FQ=-131 GT:PL:GQ 1/1:255,96,0:99 chr2 170662416 . G A 13.2 . DP=101;VDB=0.0400;AF1=0.5;AC1=1;DP4=34,25,11,16;MQ=60;FQ=16.1;PV4=0.17,8.4e-42,1,0.072 GT:PL:GQ 0/1:43,0,255:46 chr2 170664983 . G A 225 . DP=52;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,13,10,22;MQ=59;FQ=220;PV4=1,0.43,1,0.057 GT:PL:GQ 0/1:255,0,248:99 chr2 170665418 . T C 225 . DP=29;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,3,13,4;MQ=59;FQ=187;PV4=1,1,0.21,0.16 GT:PL:GQ 0/1:255,0,214:99 chr2 170665435 . T C 118 . DP=31;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,3,11,6;MQ=60;FQ=121;PV4=0.69,1.7e-17,1,1 GT:PL:GQ 0/1:148,0,238:99 chr2 170667911 . T C 149 . DP=32;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,16,0,16;MQ=60;FQ=143;PV4=1,1,1,1 GT:PL:GQ 0/1:179,0,170:99 chr2 170668106 . G A 29 . DP=10;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,0,5,0;MQ=60;FQ=32;PV4=1,0.00066,1,0.18 GT:PL:GQ 0/1:59,0,108:62 chr2 170675912 . A G 4.13 . DP=3;VDB=0.0178;AF1=0.5;AC1=1;DP4=1,0,2,0;MQ=60;FQ=4.13;PV4=1,0.029,1,1 GT:PL:GQ 0/1:32,0,32:31 chr2 170676227 . T C 63 . DP=5;VDB=0.0177;AF1=0.5;AC1=1;DP4=0,2,1,2;MQ=60;FQ=28;PV4=1,1,1,1 GT:PL:GQ 0/1:93,0,55:58 chr2 170677837 . AC A 42.5 . INDEL;DP=8;VDB=0.0284;AF1=0.5;AC1=1;DP4=2,3,1,2;MQ=60;FQ=45.5;PV4=1,0.36,1,0.068 GT:PL:GQ 0/1:80,0,138:83 chr2 170678476 . G A 176 . DP=134;VDB=0.0400;AF1=0.5;AC1=1;DP4=18,38,26,49;MQ=60;FQ=179;PV4=0.85,1.1e-55,1,0.24 GT:PL:GQ 0/1:206,0,255:99 chr2 170728897 . T C 57 . DP=22;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,10,1,9;MQ=60;FQ=60;PV4=1,2.2e-10,1,1 GT:PL:GQ 0/1:87,0,212:90 chr2 170762487 . C T 222 . DP=57;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,48,5;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr2 170762566 . A T 81 . DP=147;VDB=0.0345;AF1=0.5;AC1=1;DP4=46,29,38,28;MQ=60;FQ=84;PV4=0.73,4.8e-64,0.14,1 GT:PL:GQ 0/1:111,0,255:99 chr2 170780657 . C T 43 . DP=15;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,3,3,3;MQ=60;FQ=46;PV4=0.62,9.9e-07,1,0.13 GT:PL:GQ 0/1:73,0,214:76 chr2 170785484 . G A 3.54 . DP=8;VDB=0.0141;AF1=0.4998;AC1=1;DP4=0,5,0,3;MQ=60;FQ=5.47;PV4=1,0.0078,1,1 GT:PL:GQ 0/1:31,0,110:30 chr2 170789504 . C T 225 . DP=38;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,15,6,13;MQ=60;FQ=225;PV4=0.71,0.08,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 170821010 . A G 50 . DP=51;VDB=0.0393;AF1=0.5;AC1=1;DP4=12,12,10,7;MQ=60;FQ=53;PV4=0.75,1.7e-20,1,1 GT:PL:GQ 0/1:80,0,255:83 chr2 170850738 . T C 62 . DP=13;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:95,36,0:69 chr2 170863471 . C T 225 . DP=42;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,2,19,5;MQ=59;FQ=202;PV4=0.68,0.1,1,1 GT:PL:GQ 0/1:255,0,229:99 chr2 170911950 . T C 220 . DP=48;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,4,24,3;MQ=60;FQ=222;PV4=0.44,0.33,0.2,1 GT:PL:GQ 0/1:250,0,255:99 chr2 170917648 . A G 225 . DP=43;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,7,18,10;MQ=59;FQ=219;PV4=0.53,1,1,0.5 GT:PL:GQ 0/1:255,0,246:99 chr2 170929880 . G A 102 . DP=28;VDB=0.0140;AF1=0.5;AC1=1;DP4=16,1,10,0;MQ=59;FQ=105;PV4=1,0.0026,1,0.25 GT:PL:GQ 0/1:132,0,213:99 chr2 171070810 . G T 165 . DP=25;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,4;MQ=60;FQ=-99 GT:PL:GQ 1/1:198,72,0:99 chr2 171071369 . C T 222 . DP=54;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,46;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr2 171074008 . G C 222 . DP=53;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,8,42;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr2 171192084 . G A 77 . DP=39;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,15,3,19;MQ=59;FQ=80;PV4=0.62,5.4e-12,1,1 GT:PL:GQ 0/1:107,0,187:99 chr2 171225841 . A G 160 . DP=131;VDB=0.0380;AF1=0.5;AC1=1;DP4=36,36,28,31;MQ=60;FQ=163;PV4=0.86,4e-40,1,1 GT:PL:GQ 0/1:190,0,255:99 chr2 171239560 . A G 81 . DP=29;VDB=0.0190;AF1=0.5;AC1=1;DP4=13,3,10,2;MQ=59;FQ=84;PV4=1,1.1e-10,1,0.47 GT:PL:GQ 0/1:111,0,251:99 chr2 171240249 . C T 208 . DP=41;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,6,16,3;MQ=60;FQ=211;PV4=0.45,0.42,1,0.13 GT:PL:GQ 0/1:238,0,255:99 chr2 171242878 . A G 59 . DP=39;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,17,2,17;MQ=60;FQ=62;PV4=1,1.2e-19,1,0.48 GT:PL:GQ 0/1:89,0,212:92 chr2 171249093 . C T 93 . DP=13;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=60;FQ=70;PV4=1,1,1,1 GT:PL:GQ 0/1:123,0,97:99 chr2 171257945 . A T 79 . DP=51;VDB=0.0271;AF1=0.5;AC1=1;DP4=16,6,24,5;MQ=60;FQ=82;PV4=0.5,1.1e-27,1,1 GT:PL:GQ 0/1:109,0,255:99 chr2 171260708 . C A 150 . DP=24;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,19,5;MQ=59;FQ=-99 GT:PL:GQ 1/1:183,72,0:99 chr2 171260787 . G A 222 . DP=46;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,20;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr2 171260797 . A G 78 . DP=52;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,14,14,9;MQ=60;FQ=81;PV4=0.41,2.1e-28,1,1 GT:PL:GQ 0/1:108,0,255:99 chr2 171260820 . T C 176 . DP=51;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,29,19;MQ=59;FQ=-171 GT:PL:GQ 1/1:209,144,0:99 chr2 171261021 . T G 40 . DP=17;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:73,33,0:62 chr2 171300575 . C A 104 . DP=40;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,11,6,14;MQ=60;FQ=107;PV4=0.73,4.7e-11,1,0.37 GT:PL:GQ 0/1:134,0,255:99 chr2 171300648 . T A 82 . DP=27;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,10,1,12;MQ=60;FQ=85;PV4=0.59,2.8e-08,1,0.074 GT:PL:GQ 0/1:112,0,231:99 chr2 171319997 . A C 112 . DP=59;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,8,18,14;MQ=60;FQ=115;PV4=0.42,9.8e-23,0.19,1 GT:PL:GQ 0/1:142,0,255:99 chr2 171355198 . A G 222 . DP=92;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,40,52;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 171355329 . G C 156 . DP=28;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,3,22;MQ=59;FQ=-102 GT:PL:GQ 1/1:189,75,0:99 chr2 171356274 . G A 116 . DP=36;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,10,11;MQ=60;FQ=-90 GT:PL:GQ 1/1:149,63,0:99 chr2 171358211 . G A 222 . DP=62;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,45,16;MQ=60;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr2 171358474 . T A 34.8 . DP=2;VDB=0.0143;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:66,6,0:10 chr2 171508490 . CAAAAAAAA CAAAAAAA 14.6 . INDEL;DP=16;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,15,1;MQ=60;FQ=-82.5 GT:PL:GQ 1/1:55,48,0:59 chr2 171570151 . C T 123 . DP=75;VDB=0.0392;AF1=0.5;AC1=1;DP4=24,17,15,17;MQ=59;FQ=126;PV4=0.35,1.3e-28,0.43,0.12 GT:PL:GQ 0/1:153,0,255:99 chr2 171570488 . C G 15.1 . DP=12;VDB=0.0333;AF1=0.5;AC1=1;DP4=4,4,3,1;MQ=60;FQ=18.1;PV4=0.58,6.8e-06,1,1 GT:PL:GQ 0/1:45,0,188:48 chr2 171573185 . G T 75 . DP=16;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,10,0,6;MQ=60;FQ=78;PV4=1,1,1,1 GT:PL:GQ 0/1:105,0,143:99 chr2 171627676 . T G 222 . DP=27;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,10,17;MQ=59;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr2 171632385 . C CTT 214 . INDEL;DP=20;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,10,10;MQ=60;FQ=-94.5 GT:PL:GQ 1/1:255,60,0:99 chr2 171632401 . C T 139 . DP=20;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,6,6,2;MQ=59;FQ=142;PV4=0.37,0.26,1,0.29 GT:PL:GQ 0/1:169,0,254:99 chr2 171634347 . TA T 217 . INDEL;DP=57;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,25,6,24;MQ=60;FQ=209;PV4=0.26,0.018,1,0.34 GT:PL:GQ 0/1:255,0,244:99 chr2 171649402 . C T 64 . DP=17;VDB=0.0197;AF1=0.5;AC1=1;DP4=4,6,3,3;MQ=60;FQ=67;PV4=1,6.4e-05,1,0.035 GT:PL:GQ 0/1:94,0,223:97 chr2 171654663 . A C 142 . DP=11;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:175,27,0:51 chr2 171678625 . T C 225 . DP=97;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,34,21,25;MQ=59;FQ=225;PV4=0.21,0.0016,0.26,1 GT:PL:GQ 0/1:255,0,255:99 chr2 171818289 . G A 218 . DP=129;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,101;MQ=60;FQ=-282 GT:PL:GQ 1/1:251,255,0:99 chr2 171822466 . C T 222 . DP=126;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,58,56;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 171916664 . A T 50 . DP=10;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:83,30,0:57 chr2 172180771 . A G 170 . DP=17;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,8,7;MQ=60;FQ=-72 GT:PL:GQ 1/1:203,45,0:87 chr2 172291616 . C T 75 . DP=16;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,3,5,4;MQ=60;FQ=78;PV4=1,4.5e-05,1,1 GT:PL:GQ 0/1:105,0,156:99 chr2 172305175 . CT CTT 52.5 . INDEL;DP=7;VDB=0.0140;AF1=0.5;AC1=1;DP4=3,0,3,1;MQ=60;FQ=30.5;PV4=1,0.052,1,1 GT:PL:GQ 0/1:90,0,65:68 chr2 172309506 . T A 35 . DP=11;VDB=0.0004;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=60;FQ=38;PV4=1,3.7e-08,1,1 GT:PL:GQ 0/1:65,0,111:68 chr2 172329458 . G T 76 . DP=27;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,9,1,15;MQ=59;FQ=79;PV4=1,1.4e-13,0.22,1 GT:PL:GQ 0/1:106,0,172:99 chr2 172333295 . C T 32 . DP=6;VDB=0.0313;AF1=0.5;AC1=1;DP4=1,1,3,1;MQ=60;FQ=19.9;PV4=1,0.062,1,0.43 GT:PL:GQ 0/1:62,0,47:50 chr2 172336541 . C T 5.46 . DP=10;VDB=0.0244;AF1=0.4999;AC1=1;DP4=5,0,5,0;MQ=60;FQ=7.8;PV4=1,2.3e-07,1,1 GT:PL:GQ 0/1:34,0,111:34 chr2 172379649 . C T 25 . DP=3;VDB=0.0125;AF1=0.5003;AC1=1;DP4=1,0,2,0;MQ=60;FQ=4.13;PV4=1,0.28,1,0.33 GT:PL:GQ 0/1:55,0,29:32 chr2 172398311 . T C 27 . DP=21;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,12,0,8;MQ=59;FQ=30;PV4=1,0.00047,1,1 GT:PL:GQ 0/1:57,0,191:60 chr2 172411273 . G A 133 . DP=22;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,2,20;MQ=60;FQ=-93 GT:PL:GQ 1/1:166,66,0:99 chr2 172563922 . G A 50 . DP=73;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,36,4,24;MQ=60;FQ=53;PV4=0.75,4.6e-29,1,0.19 GT:PL:GQ 0/1:80,0,255:83 chr2 172582281 . ATTA ATTACTTA 214 . INDEL;DP=19;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,11,6;MQ=55;FQ=-85.5 GT:PL:GQ 1/1:255,51,0:99 chr2 172582344 . AACA AA 198 . INDEL;DP=15;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,6,3,4;MQ=57;FQ=174;PV4=0.19,9.7e-08,0.094,1 GT:PL:GQ 0/1:236,0,209:99 chr2 172586483 . T C 5.46 . DP=13;VDB=0.0126;AF1=0.4999;AC1=1;DP4=0,9,0,4;MQ=58;FQ=7.8;PV4=1,3.9e-07,1,0.31 GT:PL:GQ 0/1:34,0,158:34 chr2 172644229 . T C 222 . DP=49;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,29,18;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr2 172709215 . G C 153 . DP=14;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,8;MQ=58;FQ=-69 GT:PL:GQ 1/1:186,42,0:81 chr2 172712480 . T C 152 . DP=66;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,3,61;MQ=60;FQ=-220 GT:PL:GQ 1/1:185,193,0:99 chr2 172725301 . A G 222 . DP=54;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,9,44;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr2 172864845 . C A 46 . DP=5;VDB=0.0080;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=25;PV4=1,0.38,1,1 GT:PL:GQ 0/1:76,0,52:55 chr2 172865009 . T A 191 . DP=45;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,10,16,12;MQ=60;FQ=194;PV4=0.37,2.9e-07,1,0.15 GT:PL:GQ 0/1:221,0,249:99 chr2 172966250 . T C 216 . DP=23;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,8,13;MQ=59;FQ=-90 GT:PL:GQ 1/1:249,63,0:99 chr2 173292709 . A G 88 . DP=28;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,16,2,9;MQ=59;FQ=91;PV4=0.54,3.3e-08,0.11,0.39 GT:PL:GQ 0/1:118,0,193:99 chr2 173292713 . C T 54 . DP=27;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,15,1,9;MQ=59;FQ=57;PV4=1,1.3e-09,0.11,0.32 GT:PL:GQ 0/1:84,0,199:87 chr2 173292728 . T C 23 . DP=17;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,11,0,5;MQ=60;FQ=26;PV4=1,0.049,1,1 GT:PL:GQ 0/1:53,0,177:56 chr2 173659913 . T C 72.1 . DP=9;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:105,21,0:39 chr2 173831934 . C T 54 . DP=9;VDB=0.0225;AF1=0.5;AC1=1;DP4=5,1,1,2;MQ=57;FQ=57;PV4=0.23,1,1,1 GT:PL:GQ 0/1:84,0,128:87 chr2 173861340 . G A 66 . DP=98;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,32,15,20;MQ=59;FQ=69;PV4=1,7.2e-40,0.46,1 GT:PL:GQ 0/1:96,0,255:99 chr2 173861450 . A T 213 . DP=23;VDB=0.0025;AF1=0.5;AC1=1;DP4=1,9,3,10;MQ=60;FQ=141;PV4=0.6,1,1,1 GT:PL:GQ 0/1:243,0,168:99 chr2 173861456 . G C 124 . DP=20;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,2,17;MQ=60;FQ=-84 GT:PL:GQ 1/1:157,57,0:99 chr2 173866203 . C T 23 . DP=13;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,7,0,5;MQ=60;FQ=26;PV4=1,2.5e-06,1,1 GT:PL:GQ 0/1:53,0,139:56 chr2 174055731 . A G 130 . DP=62;VDB=0.0298;AF1=0.5;AC1=1;DP4=28,4,22,6;MQ=60;FQ=133;PV4=0.49,1.1e-26,1,1 GT:PL:GQ 0/1:160,0,255:99 chr2 174068513 . G C 222 . DP=64;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,42,20;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr2 174074407 . A G 67 . DP=10;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,1,4,0;MQ=60;FQ=69.9;PV4=1,0.35,1,1 GT:PL:GQ 0/1:97,0,114:99 chr2 174086285 . C T 106 . DP=12;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,6,1,5;MQ=60;FQ=92.9;PV4=1,0.32,1,0.27 GT:PL:GQ 0/1:136,0,120:99 chr2 174128513 . C T 109 . DP=69;VDB=0.0271;AF1=0.5;AC1=1;DP4=24,5,29,9;MQ=60;FQ=112;PV4=0.56,2.3e-33,1,1 GT:PL:GQ 0/1:139,0,255:99 chr2 174131392 . T C 157 . DP=22;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,7,4,5;MQ=59;FQ=160;PV4=1,1,1,1 GT:PL:GQ 0/1:187,0,203:99 chr2 174223675 . C T 72 . DP=11;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:105,27,0:51 chr2 174228418 . C T 54.1 . DP=9;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:87,21,0:39 chr2 174228744 . T C 19 . DP=3;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:51,9,0:15 chr2 174230153 . C G 222 . DP=35;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,21,12;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr2 174230983 . GTTTTTTTT GTTTTTTTTT 16.6 . INDEL;DP=10;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-64.5 GT:PL:GQ 1/1:57,30,0:43 chr2 174946760 . T C 180 . DP=34;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,6,10,3;MQ=60;FQ=183;PV4=1,1,1,1 GT:PL:GQ 0/1:210,0,255:99 chr2 174987794 . A G 86 . DP=14;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,0,6,3;MQ=60;FQ=53;PV4=0.5,8.5e-06,1,1 GT:PL:GQ 0/1:116,0,80:83 chr2 174988189 . C T 28 . DP=12;VDB=0.0359;AF1=0.5;AC1=1;DP4=7,0,5,0;MQ=58;FQ=31;PV4=1,4.6e-08,0.13,0.38 GT:PL:GQ 0/1:58,0,137:61 chr2 175199895 . G A 182 . DP=35;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,11,3,11;MQ=59;FQ=185;PV4=0.16,0.47,0.039,0.48 GT:PL:GQ 0/1:212,0,255:99 chr2 175263218 . A G 114 . DP=11;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,3,0,7;MQ=60;FQ=75;PV4=0.36,1,1,1 GT:PL:GQ 0/1:144,0,102:99 chr2 175264627 . CTTTTTTTTTTTTTTTTTT CTTTTTTTTTTTTTT,CTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTT 18 . INDEL;DP=11;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,6,0;MQ=52;FQ=-46.5 GT:PL:GQ 1/1:70,24,12,52,0,49,72,19,52,69:20 chr2 175268763 . A G 28 . DP=4;VDB=0.0188;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=28;PV4=1,1,1,0.42 GT:PL:GQ 0/1:58,0,58:58 chr2 175287778 . G A 114 . DP=41;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,14,5,18;MQ=59;FQ=117;PV4=0.68,2.2e-15,0.21,1 GT:PL:GQ 0/1:144,0,202:99 chr2 175292580 . TTCAAATTTATCAGTCAAATTTATCAGTCAAA TTCAAATTTATCAGTCAAA 125 . INDEL;DP=40;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,14,8,2;MQ=53;FQ=128;PV4=0.016,0.024,2.5e-09,1 GT:PL:GQ 0/1:163,0,255:99 chr2 175300997 . G A 225 . DP=132;VDB=0.0365;AF1=0.5;AC1=1;DP4=27,43,34,27;MQ=60;FQ=225;PV4=0.055,1,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr2 175306804 . C G 188 . DP=20;VDB=0.0216;AF1=0.5;AC1=1;DP4=7,2,8,3;MQ=60;FQ=165;PV4=1,0.21,1,1 GT:PL:GQ 0/1:218,0,192:99 chr2 175309792 . T C 109 . DP=53;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,18,11,10;MQ=59;FQ=112;PV4=0.39,8.5e-13,1,1 GT:PL:GQ 0/1:139,0,255:99 chr2 175318590 . G T 32 . DP=12;VDB=0.0025;AF1=0.5;AC1=1;DP4=1,6,2,3;MQ=60;FQ=35;PV4=0.52,1.6e-05,1,1 GT:PL:GQ 0/1:62,0,159:65 chr2 175335076 . G T 43 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:75,9,0:16 chr2 175431707 . C G 136 . DP=11;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,5;MQ=58;FQ=-60 GT:PL:GQ 1/1:169,33,0:63 chr2 175436940 . G A 222 . DP=39;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,15;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr2 175439512 . T C 222 . DP=81;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,66,13;MQ=59;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr2 175439536 . G A 222 . DP=101;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,70,25;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 175439681 . TAAAAAAAAAAAAA TAAAAAAAAAAAAAA 13.6 . INDEL;DP=42;VDB=0.0399;AF1=1;AC1=2;DP4=0,5,7,18;MQ=58;FQ=-69.5;PV4=0.3,1,0.26,1 GT:PL:GQ 1/1:54,35,0:45 chr2 175613600 . T C 37.8 . DP=3;VDB=0.0050;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:69,6,0:10 chr2 175622178 . TGGG TGG 19.3 . INDEL;DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:58,6,0:10 chr2 175622788 . G A 222 . DP=19;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,6,13;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr2 175629021 . C A 70 . DP=23;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,3,7,2;MQ=60;FQ=73;PV4=1,1.4e-08,1,1 GT:PL:GQ 0/1:100,0,234:99 chr2 175666656 . G A 128 . DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:161,15,0:27 chr2 175711942 . C T 41 . DP=17;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,6,0,7;MQ=60;FQ=44;PV4=0.47,4.4e-07,1,1 GT:PL:GQ 0/1:71,0,185:74 chr2 175939604 . G A 76 . DP=17;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,8,2,7;MQ=60;FQ=79;PV4=0.47,0.00013,1,0.11 GT:PL:GQ 0/1:106,0,137:99 chr2 175945338 . G A 95 . DP=58;VDB=0.0140;AF1=0.5;AC1=1;DP4=27,4,22,3;MQ=60;FQ=98;PV4=1,1.9e-27,1,0.47 GT:PL:GQ 0/1:125,0,255:99 chr2 175945502 . GAAA GAA 216 . INDEL;DP=75;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,28,6,31;MQ=59;FQ=175;PV4=0.49,0.0018,0.097,0.46 GT:PL:GQ 0/1:254,0,210:99 chr2 176044008 . G T 48 . DP=15;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,8,1,6;MQ=60;FQ=51;PV4=0.47,1.8e-07,1,1 GT:PL:GQ 0/1:78,0,146:81 chr2 177016728 . T C 81 . DP=52;VDB=0.0271;AF1=0.5;AC1=1;DP4=21,10,13,7;MQ=60;FQ=84;PV4=1,1.4e-08,1,1 GT:PL:GQ 0/1:111,0,255:99 chr2 177033779 . C T 47 . DP=14;VDB=0.0118;AF1=0.5;AC1=1;DP4=5,1,7,0;MQ=60;FQ=50;PV4=0.46,0.00054,1,0.049 GT:PL:GQ 0/1:77,0,129:80 chr2 177034121 . G T 111 . DP=24;VDB=0.0325;AF1=0.5;AC1=1;DP4=7,3,6,8;MQ=60;FQ=114;PV4=0.24,5.7e-08,1,0.27 GT:PL:GQ 0/1:141,0,187:99 chr2 177036754 . T C 132 . DP=77;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,24,12,27;MQ=60;FQ=135;PV4=1,4.3e-17,1,0.27 GT:PL:GQ 0/1:162,0,255:99 chr2 177054411 . T C 225 . DP=60;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,13,18,9;MQ=60;FQ=225;PV4=0.6,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 177054769 . G A 137 . DP=29;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,6,10,5;MQ=58;FQ=140;PV4=0.45,3.4e-08,0.1,0.12 GT:PL:GQ 0/1:167,0,231:99 chr2 178358072 . C T 187 . DP=12;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:220,33,0:63 chr2 178362572 . G A 216 . DP=9;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,3,6;MQ=60;FQ=-54 GT:PL:GQ 1/1:249,27,0:51 chr2 178378452 . T A 44 . DP=3;VDB=0.0030;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:76,9,0:16 chr2 178417142 . C T 222 . DP=54;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,4,49;MQ=58;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr2 178481818 . G T 222 . DP=184;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,101,81;MQ=47;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 178482094 . C T 122 . DP=18;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,17,1;MQ=29;FQ=-81 GT:PL:GQ 1/1:155,54,0:99 chr2 178494173 . GGGAGGA GGGAGGAGGA 214 . INDEL;DP=23;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,13,4;MQ=56;FQ=-59.5;PV4=0.28,1,1,1 GT:PL:GQ 1/1:255,25,0:47 chr2 178528703 . C T 222 . DP=83;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,21,60;MQ=60;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr2 178528789 . G A 222 . DP=27;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,7,19;MQ=59;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr2 178534110 . G T 63.1 . DP=7;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:96,21,0:39 chr2 178534324 . A G 219 . DP=54;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,38;MQ=60;FQ=-187 GT:PL:GQ 1/1:252,160,0:99 chr2 178540293 . A G 222 . DP=24;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,9;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr2 178545713 . C T 75.1 . DP=6;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,2,4;MQ=60;FQ=-45 GT:PL:GQ 1/1:108,18,0:33 chr2 178561947 . G C 68 . DP=37;VDB=0.0066;AF1=0.5;AC1=1;DP4=17,0,19,0;MQ=60;FQ=71;PV4=1,3e-18,1,1 GT:PL:GQ 0/1:98,0,178:99 chr2 178565815 . T C 140 . DP=32;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,5,11,7;MQ=60;FQ=143;PV4=1,2.1e-09,1,1 GT:PL:GQ 0/1:170,0,245:99 chr2 178633945 . A C 67 . DP=35;VDB=0.0373;AF1=0.5;AC1=1;DP4=12,5,11,3;MQ=60;FQ=70;PV4=0.7,1.9e-15,1,1 GT:PL:GQ 0/1:97,0,255:99 chr2 178681447 . C A 35 . DP=14;VDB=0.0164;AF1=0.5;AC1=1;DP4=5,0,9,0;MQ=58;FQ=38;PV4=1,4.9e-07,0.24,1 GT:PL:GQ 0/1:65,0,97:68 chr2 178681534 . C T 103 . DP=93;VDB=0.0244;AF1=0.5;AC1=1;DP4=34,13,30,13;MQ=59;FQ=106;PV4=0.82,4.3e-40,0.069,1 GT:PL:GQ 0/1:133,0,255:99 chr2 178681716 . G C 70 . DP=24;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,10,1,8;MQ=60;FQ=73;PV4=1,1.4e-06,1,1 GT:PL:GQ 0/1:100,0,191:99 chr2 178682558 . A ATATAAAC 82.5 . INDEL;DP=34;VDB=0.0216;AF1=0.5;AC1=1;DP4=16,3,12,1;MQ=50;FQ=85.5;PV4=0.63,1,0,1 GT:PL:GQ 0/1:120,0,255:99 chr2 178682603 . T C 152 . DP=63;VDB=0.0298;AF1=0.5;AC1=1;DP4=28,8,15,12;MQ=52;FQ=155;PV4=0.1,3.8e-22,1.7e-16,1 GT:PL:GQ 0/1:182,0,255:99 chr2 178682655 . A G 225 . DP=74;VDB=0.0400;AF1=0.5;AC1=1;DP4=21,19,10,23;MQ=55;FQ=225;PV4=0.063,1,3.1e-08,1 GT:PL:GQ 0/1:255,0,255:99 chr2 178684921 . G A 11.3 . DP=18;VDB=0.0373;AF1=0.5;AC1=1;DP4=7,6,3,2;MQ=60;FQ=14.2;PV4=1,1.2e-07,1,0.15 GT:PL:GQ 0/1:41,0,255:43 chr2 178769992 . T C 55 . DP=18;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81 GT:PL:GQ 1/1:88,54,0:99 chr2 178936373 . T G 178 . DP=62;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,24;MQ=60;FQ=-199 GT:PL:GQ 1/1:211,172,0:99 chr2 178936614 . C T 222 . DP=94;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,47,41;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 178969039 . G A 147 . DP=18;VDB=0.0140;AF1=0.5;AC1=1;DP4=7,2,8,1;MQ=60;FQ=150;PV4=1,1,1,1 GT:PL:GQ 0/1:177,0,189:99 chr2 179189012 . C T 136 . DP=23;VDB=0.0392;AF1=0.5;AC1=1;DP4=0,11,0,12;MQ=59;FQ=133;PV4=1,0.18,1,1 GT:PL:GQ 0/1:166,0,161:99 chr2 179196233 . G A 169 . DP=53;VDB=0.0322;AF1=0.5;AC1=1;DP4=25,3,23,1;MQ=60;FQ=172;PV4=0.61,0.081,1,0.27 GT:PL:GQ 0/1:199,0,255:99 chr2 179200947 . C T 130 . DP=25;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,1,12,0;MQ=59;FQ=133;PV4=0.43,0.09,0.2,1 GT:PL:GQ 0/1:160,0,170:99 chr2 179203797 . G A 155 . DP=119;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,46,14,43;MQ=60;FQ=158;PV4=0.83,2.8e-46,0.16,0.1 GT:PL:GQ 0/1:185,0,255:99 chr2 179204568 . C T 100 . DP=16;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,7,0,7;MQ=60;FQ=100;PV4=1,0.35,1,1 GT:PL:GQ 0/1:130,0,131:99 chr2 179208974 . G A 225 . DP=132;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,45,34,29;MQ=60;FQ=225;PV4=0.012,1,0.49,1 GT:PL:GQ 0/1:255,0,255:99 chr2 179213872 . C T 186 . DP=78;VDB=0.0190;AF1=0.5;AC1=1;DP4=32,1,43,1;MQ=60;FQ=180;PV4=1,0.19,1,0.12 GT:PL:GQ 0/1:216,0,208:99 chr2 179238507 . T C 47 . DP=11;VDB=0.0042;AF1=0.5;AC1=1;DP4=3,1,7,0;MQ=60;FQ=49.7;PV4=0.36,0.033,1,0.46 GT:PL:GQ 0/1:77,0,88:80 chr2 179260382 . A G 62 . DP=33;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,18,0,15;MQ=60;FQ=65;PV4=1,1.7e-11,1,0.31 GT:PL:GQ 0/1:92,0,180:95 chr2 179312440 . GTAC GTACTAC 5.08 . INDEL;DP=4;VDB=0.0041;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=47;FQ=7.36;PV4=1,1,0,1 GT:PL:GQ 0/1:41,0,75:41 chr2 179324025 . C T 88 . DP=59;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,26,7,16;MQ=60;FQ=91;PV4=0.77,6.1e-27,1,1 GT:PL:GQ 0/1:118,0,255:99 chr2 179325735 . C T 98 . DP=81;VDB=0.0398;AF1=0.5;AC1=1;DP4=37,13,26,5;MQ=59;FQ=101;PV4=0.41,1.4e-34,1,0.17 GT:PL:GQ 0/1:128,0,255:99 chr2 179341953 . G A 40 . DP=55;VDB=0.0393;AF1=0.5;AC1=1;DP4=8,23,3,20;MQ=60;FQ=43;PV4=0.32,8.1e-24,1,0.47 GT:PL:GQ 0/1:70,0,255:73 chr2 179358665 . A G 141 . DP=57;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,12,13,12;MQ=53;FQ=144;PV4=0.79,1.8e-19,6.6e-09,1 GT:PL:GQ 0/1:171,0,255:99 chr2 179367086 . A G 13.2 . DP=26;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,3,7,2;MQ=59;FQ=16.1;PV4=1,1.9e-10,1,1 GT:PL:GQ 0/1:43,0,247:46 chr2 179368380 . G A 59 . DP=27;VDB=0.0066;AF1=0.5;AC1=1;DP4=11,1,14,1;MQ=57;FQ=62;PV4=1,2.3e-14,1,1 GT:PL:GQ 0/1:89,0,184:92 chr2 179392080 . A T 54 . DP=66;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,20,14,14;MQ=59;FQ=57;PV4=0.8,1.3e-29,0.1,1 GT:PL:GQ 0/1:84,0,255:87 chr2 179395067 . C G 139 . DP=61;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,12,18,14;MQ=60;FQ=142;PV4=1,3e-24,1,1 GT:PL:GQ 0/1:169,0,255:99 chr2 179395958 . T C 147 . DP=86;VDB=0.0271;AF1=0.5;AC1=1;DP4=27,22,16,20;MQ=59;FQ=150;PV4=0.38,2e-26,1,1 GT:PL:GQ 0/1:177,0,255:99 chr2 179396354 . G A 104 . DP=65;VDB=0.0398;AF1=0.5;AC1=1;DP4=19,18,14,12;MQ=59;FQ=107;PV4=1,4.1e-21,0.4,1 GT:PL:GQ 0/1:134,0,255:99 chr2 179397561 . C T 225 . DP=127;VDB=0.0271;AF1=0.5;AC1=1;DP4=45,18,28,33;MQ=59;FQ=225;PV4=0.006,0.082,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 179398823 . G A 225 . DP=136;VDB=0.0365;AF1=0.5;AC1=1;DP4=39,29,49,17;MQ=60;FQ=225;PV4=0.046,0.36,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr2 179403593 . G A 129 . DP=96;VDB=0.0399;AF1=0.5;AC1=1;DP4=32,18,23,21;MQ=59;FQ=132;PV4=0.3,1.4e-37,0.031,0.46 GT:PL:GQ 0/1:159,0,255:99 chr2 179404786 . A T 139 . DP=117;VDB=0.0345;AF1=0.5;AC1=1;DP4=32,18,41,24;MQ=60;FQ=142;PV4=1,1.2e-46,1,1 GT:PL:GQ 0/1:169,0,255:99 chr2 179406003 . C A 110 . DP=35;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,5,11,4;MQ=59;FQ=113;PV4=1,5.6e-11,0.45,1 GT:PL:GQ 0/1:140,0,255:99 chr2 179406191 . C T 225 . DP=23;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,3,11,5;MQ=58;FQ=125;PV4=0.66,0.17,1,1 GT:PL:GQ 0/1:255,0,152:99 chr2 179411665 . A G 225 . DP=57;VDB=0.0298;AF1=0.5;AC1=1;DP4=22,3,24,6;MQ=60;FQ=216;PV4=0.49,1,0.18,1 GT:PL:GQ 0/1:255,0,243:99 chr2 179413110 . G A 168 . DP=152;VDB=0.0345;AF1=0.5;AC1=1;DP4=44,36,22,48;MQ=59;FQ=171;PV4=0.005,3.8e-50,0.45,0.32 GT:PL:GQ 0/1:198,0,255:99 chr2 179414177 . G A 95 . DP=114;VDB=0.0398;AF1=0.5;AC1=1;DP4=18,30,24,39;MQ=60;FQ=98;PV4=1,2.5e-51,1,0.045 GT:PL:GQ 0/1:125,0,255:99 chr2 179414633 . C A 173 . DP=49;VDB=0.0359;AF1=0.5;AC1=1;DP4=5,12,14,15;MQ=59;FQ=176;PV4=0.24,1.5e-12,1,1 GT:PL:GQ 0/1:203,0,241:99 chr2 179421470 . T G 38 . DP=7;VDB=0.0003;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=21;PV4=1,0.0016,1,1 GT:PL:GQ 0/1:68,0,48:51 chr2 179421694 . A G 155 . DP=172;VDB=0.0392;AF1=0.5;AC1=1;DP4=33,60,33,43;MQ=60;FQ=158;PV4=0.34,1.3e-54,0.13,1 GT:PL:GQ 0/1:185,0,255:99 chr2 179427186 . A G 225 . DP=143;VDB=0.0392;AF1=0.5;AC1=1;DP4=37,38,31,33;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 179427536 . T C 225 . DP=99;VDB=0.0322;AF1=0.5;AC1=1;DP4=30,17,35,15;MQ=60;FQ=225;PV4=0.67,0.13,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 179430997 . G A 225 . DP=66;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,12,24,14;MQ=60;FQ=225;PV4=0.8,0.41,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 179436020 . G A 225 . DP=78;VDB=0.0398;AF1=0.5;AC1=1;DP4=22,19,19,16;MQ=60;FQ=225;PV4=1,0.32,1,0.34 GT:PL:GQ 0/1:255,0,255:99 chr2 179444137 . A G 60 . DP=8;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,2,1,5;MQ=60;FQ=15.1;PV4=1,0.0056,1,0.26 GT:PL:GQ 0/1:90,0,42:45 chr2 179444768 . C G 222 . DP=129;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,32,93;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 179444939 . C T 221 . DP=28;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,9,5,7;MQ=59;FQ=223;PV4=1,0.44,1,1 GT:PL:GQ 0/1:251,0,255:99 chr2 179447848 . T C 175 . DP=130;VDB=0.0398;AF1=0.5;AC1=1;DP4=30,31,27,37;MQ=60;FQ=178;PV4=0.48,3.6e-39,1,0.27 GT:PL:GQ 0/1:205,0,255:99 chr2 179448911 . G A 28 . DP=3;VDB=0.0169;AF1=0.5002;AC1=1;DP4=1,0,2,0;MQ=60;FQ=4.77;PV4=1,0.33,1,1 GT:PL:GQ 0/1:58,0,30:33 chr2 179451420 . G A 92 . DP=51;VDB=0.0359;AF1=0.5;AC1=1;DP4=9,25,7,9;MQ=59;FQ=95;PV4=0.33,1.8e-11,0.48,0.05 GT:PL:GQ 0/1:122,0,255:99 chr2 179454394 . A G 179 . DP=123;VDB=0.0400;AF1=0.5;AC1=1;DP4=26,28,33,35;MQ=60;FQ=182;PV4=1,3e-39,1,1 GT:PL:GQ 0/1:209,0,255:99 chr2 179455207 . T C 158 . DP=104;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,38,8,40;MQ=60;FQ=161;PV4=0.16,1.2e-32,0.47,1 GT:PL:GQ 0/1:188,0,255:99 chr2 179457147 . G A 154 . DP=128;VDB=0.0298;AF1=0.5;AC1=1;DP4=45,14,48,19;MQ=59;FQ=157;PV4=0.69,1.1e-50,1,1 GT:PL:GQ 0/1:184,0,255:99 chr2 179458591 . C T 225 . DP=104;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,17,35,24;MQ=60;FQ=225;PV4=1,1,0.21,1 GT:PL:GQ 0/1:255,0,255:99 chr2 179464527 . T C 131 . DP=66;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,30,5,24;MQ=60;FQ=134;PV4=0.72,1.3e-22,1,1 GT:PL:GQ 0/1:161,0,255:99 chr2 179484757 . C T 106 . DP=137;VDB=0.0365;AF1=0.5;AC1=1;DP4=39,25,45,24;MQ=60;FQ=109;PV4=0.72,4.9e-60,0.086,1 GT:PL:GQ 0/1:136,0,255:99 chr2 179514433 . T C 119 . DP=36;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,10,9,8;MQ=60;FQ=122;PV4=1,1.2e-16,1,1 GT:PL:GQ 0/1:149,0,255:99 chr2 179518911 . TAGCAG TAG 217 . INDEL;DP=31;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,7,10,6;MQ=56;FQ=217;PV4=0.47,0.0022,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 179539903 . C A 84 . DP=20;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,9,2,8;MQ=60;FQ=87;PV4=1,6.3e-08,1,0.28 GT:PL:GQ 0/1:114,0,184:99 chr2 179543217 . C T 17.1 . DP=35;VDB=0.0081;AF1=0.5;AC1=1;DP4=5,20,3,6;MQ=60;FQ=20.1;PV4=0.65,1e-13,1,0.12 GT:PL:GQ 0/1:47,0,255:50 chr2 179547860 . A G 80 . DP=18;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,1,9,3;MQ=60;FQ=82.7;PV4=1,1.9e-07,1,0.32 GT:PL:GQ 0/1:110,0,122:99 chr2 179548954 . tcaacaacaacaacaacaacaa tCAAcaacaacaacaacaacaacaa 217 . INDEL;DP=72;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,9,24,10;MQ=59;FQ=217;PV4=0.78,1,0.062,1 GT:PL:GQ 0/1:255,0,255:99 chr2 179549707 . G A 225 . DP=61;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,8,16,15;MQ=60;FQ=225;PV4=0.18,0.13,1,0.36 GT:PL:GQ 0/1:255,0,255:99 chr2 179558366 . T C 113 . DP=26;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,6,5,2;MQ=60;FQ=116;PV4=1,1,1,1 GT:PL:GQ 0/1:143,0,255:99 chr2 179566038 . C T 122 . DP=15;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,5,0,9;MQ=60;FQ=113;PV4=0.4,0.17,1,1 GT:PL:GQ 0/1:152,0,140:99 chr2 179566051 . C T 37 . DP=7;VDB=0.0006;AF1=0.5;AC1=1;DP4=1,1,0,5;MQ=60;FQ=22;PV4=0.29,0.0094,1,1 GT:PL:GQ 0/1:67,0,49:52 chr2 179566146 . T G 106 . DP=29;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,8,5;MQ=58;FQ=-66 GT:PL:GQ 1/1:139,39,0:75 chr2 179575511 . C T 44 . DP=33;VDB=0.0099;AF1=0.5;AC1=1;DP4=15,5,12,1;MQ=59;FQ=47;PV4=0.36,1.9e-18,1,1 GT:PL:GQ 0/1:74,0,255:77 chr2 179578730 . G A 151 . DP=149;VDB=0.0345;AF1=0.5;AC1=1;DP4=23,59,20,47;MQ=60;FQ=154;PV4=0.86,9.8e-43,1,1 GT:PL:GQ 0/1:181,0,255:99 chr2 179579093 . T C 159 . DP=128;VDB=0.0380;AF1=0.5;AC1=1;DP4=39,33,26,29;MQ=60;FQ=162;PV4=0.48,6.8e-50,1,0.44 GT:PL:GQ 0/1:189,0,255:99 chr2 179579212 . T C 140 . DP=121;VDB=0.0271;AF1=0.5;AC1=1;DP4=24,48,18,29;MQ=59;FQ=143;PV4=0.7,5.6e-33,0.071,1 GT:PL:GQ 0/1:170,0,255:99 chr2 179579822 . T A 119 . DP=69;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,16,17,26;MQ=60;FQ=122;PV4=0.79,7.4e-31,1,0.15 GT:PL:GQ 0/1:149,0,255:99 chr2 179580583 . T C 23 . DP=17;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,10,0,7;MQ=60;FQ=26;PV4=1,7.1e-09,1,1 GT:PL:GQ 0/1:53,0,160:56 chr2 179582162 . C T 225 . DP=51;VDB=0.0393;AF1=0.5;AC1=1;DP4=14,9,10,16;MQ=59;FQ=225;PV4=0.16,0.062,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 179582327 . C T 135 . DP=69;VDB=0.0392;AF1=0.5;AC1=1;DP4=29,9,22,7;MQ=60;FQ=138;PV4=1,6.6e-20,1,1 GT:PL:GQ 0/1:165,0,255:99 chr2 179582537 . G T 225 . DP=145;VDB=0.0345;AF1=0.5;AC1=1;DP4=28,37,35,42;MQ=60;FQ=225;PV4=0.87,0.02,0.33,1 GT:PL:GQ 0/1:255,0,255:99 chr2 179582605 . A G 117 . DP=154;VDB=0.0398;AF1=0.5;AC1=1;DP4=43,32,50,26;MQ=60;FQ=120;PV4=0.32,1.6e-66,1,1 GT:PL:GQ 0/1:147,0,255:99 chr2 179583398 . T C 225 . DP=98;VDB=0.0392;AF1=0.5;AC1=1;DP4=38,11,31,14;MQ=60;FQ=225;PV4=0.36,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 179583496 . T G 116 . DP=135;VDB=0.0392;AF1=0.5;AC1=1;DP4=35,36,23,39;MQ=60;FQ=119;PV4=0.17,2.5e-51,1,0.063 GT:PL:GQ 0/1:146,0,255:99 chr2 179585266 . C T 176 . DP=33;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,13,18;MQ=59;FQ=-120 GT:PL:GQ 1/1:209,93,0:99 chr2 179585393 . A G 155 . DP=11;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,4,3,4;MQ=60;FQ=63;PV4=0.24,0.47,1,0.16 GT:PL:GQ 0/1:185,0,90:93 chr2 179587130 . C G 166 . DP=139;VDB=0.0400;AF1=0.5;AC1=1;DP4=38,29,36,32;MQ=60;FQ=169;PV4=0.73,1.6e-54,1,0.22 GT:PL:GQ 0/1:196,0,255:99 chr2 179587687 . T C 177 . DP=143;VDB=0.0399;AF1=0.5;AC1=1;DP4=38,30,39,31;MQ=60;FQ=180;PV4=1,2.1e-52,1,1 GT:PL:GQ 0/1:207,0,255:99 chr2 179595117 . C G 218 . DP=28;VDB=0.0398;AF1=0.5;AC1=1;DP4=8,7,6,7;MQ=58;FQ=220;PV4=1,0.33,0.46,1 GT:PL:GQ 0/1:248,0,255:99 chr2 179599473 . C G 168 . DP=196;VDB=0.0400;AF1=0.5;AC1=1;DP4=62,39,61,32;MQ=60;FQ=171;PV4=0.55,1.1e-57,0.48,0.023 GT:PL:GQ 0/1:198,0,255:99 chr2 179600563 . G A 222 . DP=146;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,60,79;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 179605180 . C T 225 . DP=115;VDB=0.0398;AF1=0.5;AC1=1;DP4=31,33,20,26;MQ=59;FQ=225;PV4=0.7,1,1,0.42 GT:PL:GQ 0/1:255,0,255:99 chr2 179614952 . A G 222 . DP=62;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,33;MQ=59;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr2 179615887 . T C 176 . DP=53;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,25,25;MQ=59;FQ=-178 GT:PL:GQ 1/1:209,151,0:99 chr2 179615931 . C G 222 . DP=50;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,28,19;MQ=59;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr2 179615994 . T C 222 . DP=84;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,54,27;MQ=60;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr2 179618019 . T A 14.9 . DP=2;VDB=0.0145;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:46,6,0:10 chr2 179620951 . C T 222 . DP=88;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,67,18;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 179621477 . C T 222 . DP=76;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,24,45;MQ=60;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr2 179623758 . C T 222 . DP=92;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,65,24;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 179623939 . T C 222 . DP=52;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,10,40;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr2 179629363 . T C 205 . DP=32;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,19,13;MQ=60;FQ=-123 GT:PL:GQ 1/1:238,96,0:99 chr2 179629461 . C T 222 . DP=24;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,6,15;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr2 179632710 . T C 176 . DP=183;VDB=0.0392;AF1=0.5;AC1=1;DP4=53,31,71,24;MQ=60;FQ=179;PV4=0.11,3.9e-70,1,1 GT:PL:GQ 0/1:206,0,255:99 chr2 179634376 . gtatatatatatatatat gtatatatatatatat 161 . INDEL;DP=9;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,2;MQ=60;FQ=-55.5 GT:PL:GQ 1/1:201,21,0:39 chr2 179635882 . C T 134 . DP=8;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:167,21,0:39 chr2 179639297 . C T 20.6 . DP=5;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:53,12,0:21 chr2 179642425 . G A 222 . DP=86;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,64,19;MQ=59;FQ=-277 GT:PL:GQ 1/1:255,250,0:99 chr2 179643886 . A G 162 . DP=40;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,9,29;MQ=59;FQ=-141 GT:PL:GQ 1/1:195,114,0:99 chr2 179643934 . A G 222 . DP=38;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,17,20;MQ=59;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr2 179644035 . G A 184 . DP=43;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,19,23;MQ=60;FQ=-153 GT:PL:GQ 1/1:217,126,0:99 chr2 179644855 . T C 90 . DP=38;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,7,14,7;MQ=59;FQ=93;PV4=0.73,1.1e-23,0.2,1 GT:PL:GQ 0/1:120,0,255:99 chr2 179647824 . G A 141 . DP=25;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,11,1,8;MQ=60;FQ=144;PV4=1,1,1,1 GT:PL:GQ 0/1:171,0,240:99 chr2 179659912 . G A 225 . DP=54;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,10,15,19;MQ=60;FQ=225;PV4=1,1,0.23,1 GT:PL:GQ 0/1:255,0,255:99 chr2 179667090 . C T 87 . DP=27;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,14,4,6;MQ=60;FQ=90;PV4=0.16,6.9e-11,1,0.36 GT:PL:GQ 0/1:117,0,233:99 chr2 179702268 . A G 148 . DP=89;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,50,31;MQ=60;FQ=-271 GT:PL:GQ 1/1:181,244,0:99 chr2 179732980 . A G 60 . DP=9;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:93,24,0:45 chr2 179732997 . A T 22.1 . DP=7;VDB=0.0190;AF1=0.5102;AC1=1;DP4=0,1,0,6;MQ=60;FQ=-13.2;PV4=1,0.00027,1,1 GT:PL:GQ 0/1:52,0,14:17 chr2 179753245 . C T 191 . DP=29;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,1,9,4;MQ=57;FQ=173;PV4=0.16,0.042,0.26,0.28 GT:PL:GQ 0/1:221,0,200:99 chr2 179783696 . C A 36 . DP=11;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,5,1,4;MQ=60;FQ=38.4;PV4=1,0.19,1,1 GT:PL:GQ 0/1:66,0,74:68 chr2 179809500 . C T 61.3 . DP=5;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:94,15,0:27 chr2 179825838 . TGG TG 97.5 . INDEL;DP=27;VDB=0.0025;AF1=0.5;AC1=1;DP4=15,0,12,0;MQ=60;FQ=100;PV4=1,0.094,1,0.3 GT:PL:GQ 0/1:135,0,171:99 chr2 179826241 . A G 11.3 . DP=8;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=14.2;PV4=1,0.0015,1,1 GT:PL:GQ 0/1:41,0,76:43 chr2 179839833 . A G 202 . DP=27;VDB=0.0099;AF1=0.5;AC1=1;DP4=9,7,5,6;MQ=60;FQ=205;PV4=0.7,1,1,1 GT:PL:GQ 0/1:232,0,255:99 chr2 179839888 . G A 31 . DP=16;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,8,1,5;MQ=59;FQ=34;PV4=1,1.5e-07,1,1 GT:PL:GQ 0/1:61,0,209:64 chr2 180039068 . C T 193 . DP=56;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,47,6;MQ=59;FQ=-187 GT:PL:GQ 1/1:226,160,0:99 chr2 180047746 . G C 222 . DP=26;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,22,3;MQ=59;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr2 180047908 . T C 85 . DP=25;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,3,18;MQ=59;FQ=-90 GT:PL:GQ 1/1:118,63,0:99 chr2 180308028 . C T 61 . DP=9;VDB=0.0384;AF1=0.5;AC1=1;DP4=2,0,6,1;MQ=60;FQ=17.1;PV4=1,0.00015,1,1 GT:PL:GQ 0/1:91,0,44:47 chr2 180383498 . C A 39.5 . DP=4;VDB=0.0017;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:72,12,0:21 chr2 180725481 . T C 178 . DP=9;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,4;MQ=60;FQ=-51 GT:PL:GQ 1/1:211,24,0:45 chr2 180810180 . C T 103 . DP=106;VDB=0.0399;AF1=0.5;AC1=1;DP4=45,15,32,12;MQ=59;FQ=106;PV4=0.82,1e-38,0.2,0.21 GT:PL:GQ 0/1:133,0,255:99 chr2 180810264 . A T 225 . DP=192;VDB=0.0298;AF1=0.5;AC1=1;DP4=69,37,55,28;MQ=60;FQ=225;PV4=0.88,1,0.21,1 GT:PL:GQ 0/1:255,0,255:99 chr2 180815528 . A T 70 . DP=11;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,2,5,2;MQ=58;FQ=72.7;PV4=0.58,8.5e-06,0.24,1 GT:PL:GQ 0/1:100,0,112:99 chr2 180835589 . A G 118 . DP=37;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,12,24;MQ=59;FQ=-135 GT:PL:GQ 1/1:151,108,0:99 chr2 180835792 . T A 76 . DP=55;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,28,3,23;MQ=60;FQ=79;PV4=0.33,5.5e-14,0.15,1 GT:PL:GQ 0/1:106,0,204:99 chr2 180837806 . T A 22 . DP=29;VDB=0.0019;AF1=0.5;AC1=1;DP4=13,1,15,0;MQ=59;FQ=25;PV4=0.48,1.1e-18,1,0.37 GT:PL:GQ 0/1:52,0,199:55 chr2 180846743 . G T 10.4 . DP=14;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,8,0,6;MQ=60;FQ=13.2;PV4=1,4.6e-09,1,1 GT:PL:GQ 0/1:40,0,156:42 chr2 182340714 . ACTC ACTCTC 83.5 . INDEL;DP=12;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,8,0,3;MQ=60;FQ=86.5;PV4=1,1,1,0.25 GT:PL:GQ 0/1:121,0,202:99 chr2 182350489 . T C 55 . DP=18;VDB=0.0099;AF1=0.5;AC1=1;DP4=9,1,7,1;MQ=60;FQ=58;PV4=1,4.3e-08,1,1 GT:PL:GQ 0/1:85,0,183:88 chr2 182350743 . A G 222 . DP=64;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,7,55;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr2 182374534 . A G 172 . DP=32;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,4,26;MQ=59;FQ=-117 GT:PL:GQ 1/1:205,90,0:99 chr2 182376546 . T G 147 . DP=22;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,7,14;MQ=60;FQ=-90 GT:PL:GQ 1/1:180,63,0:99 chr2 182387133 . A G 66 . DP=16;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,14;MQ=60;FQ=-69 GT:PL:GQ 1/1:99,42,0:81 chr2 182395345 . G A 222 . DP=127;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,63,61;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 182399097 . T C 222 . DP=24;VDB=0.0400;AF1=1;AC1=2;DP4=1,0,8,14;MQ=58;FQ=-74;PV4=0.39,1,1,1 GT:PL:GQ 1/1:255,47,0:91 chr2 182399497 . ATTTTTTTTTTT ATTTTTTTTTTTTT,ATTTTTTTTTTTT 84.5 . INDEL;DP=17;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,7;MQ=60;FQ=-70.5 GT:PL:GQ 1/1:125,36,0,129,20,123:69 chr2 182399638 . A G 222 . DP=14;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,10;MQ=58;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr2 182403792 . A AT 214 . INDEL;DP=113;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,95,18;MQ=60;FQ=-290 GT:PL:GQ 1/1:255,255,0:99 chr2 182403851 . G A 222 . DP=215;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,131,78;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 182412633 . GACACACACA GACACACACACACACACACACACA,GACACACACACACACACACACA 79.5 . INDEL;DP=30;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,0,15;MQ=35;FQ=-64.5 GT:PL:GQ 1/1:219,129,99,125,0,110:57 chr2 182413259 . A G 130 . DP=28;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,23,4;MQ=60;FQ=-108 GT:PL:GQ 1/1:163,81,0:99 chr2 182413602 . A T 157 . DP=55;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,15,34;MQ=60;FQ=-175 GT:PL:GQ 1/1:190,148,0:99 chr2 182521578 . G A 84 . DP=16;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,2,5,4;MQ=54;FQ=87;PV4=0.63,0.00018,1,1 GT:PL:GQ 0/1:114,0,141:99 chr2 182543455 . T C 106 . DP=78;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,30,8,23;MQ=59;FQ=109;PV4=0.61,2.8e-22,0.4,1 GT:PL:GQ 0/1:136,0,255:99 chr2 182794534 . G A 3.54 . DP=4;VDB=0.0174;AF1=0.4998;AC1=1;DP4=0,2,0,2;MQ=54;FQ=5.39;PV4=1,0.019,1,1 GT:PL:GQ 0/1:31,0,47:30 chr2 182928555 . G C 222 . DP=74;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,31,41;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr2 182981846 . G C 11.1 . DP=2;VDB=0.0182;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr2 183053658 . C G 225 . DP=105;VDB=0.0244;AF1=0.5;AC1=1;DP4=36,9,33,26;MQ=60;FQ=225;PV4=0.012,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 183066377 . CAAAAAAAAAAaaa CAAAAAAAAAAAAAAaaa,CAAAAAAAAAAAAaaa 36.4 . INDEL;DP=15;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,4,2;MQ=52;FQ=-43.5 GT:PL:GQ 1/1:97,30,21,80,0,70:16 chr2 183070911 . G A 17.1 . DP=6;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=60;FQ=19.3;PV4=1,0.0001,1,0.13 GT:PL:GQ 0/1:47,0,54:49 chr2 183088584 . G A 35 . DP=26;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,1,8,1;MQ=60;FQ=38;PV4=1,3.6e-12,1,1 GT:PL:GQ 0/1:65,0,209:68 chr2 183106758 . T G 60 . DP=26;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,8,1,13;MQ=58;FQ=63;PV4=0.55,3.3e-12,1,0.061 GT:PL:GQ 0/1:90,0,186:93 chr2 183129242 . A G 73.1 . DP=5;VDB=0.0022;AF1=0.5064;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-11.3;PV4=1,1,1,1 GT:PL:GQ 0/1:103,0,16:19 chr2 183386890 . G A 155 . DP=65;VDB=0.0322;AF1=0.5;AC1=1;DP4=21,3,29,9;MQ=59;FQ=158;PV4=0.34,1.6e-24,1,0.023 GT:PL:GQ 0/1:185,0,246:99 chr2 183584755 . G A 7.8 . DP=3;VDB=0.0196;AF1=0.5006;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-3.72;PV4=1,0.15,1,1 GT:PL:GQ 0/1:37,0,26:30 chr2 183593697 . C T 222 . DP=76;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,11,62;MQ=60;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr2 183597063 . T G 5.29 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:35,6,0:6 chr2 183597318 . A G 222 . DP=74;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,3,65;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr2 183616592 . C T 162 . DP=72;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,63;MQ=60;FQ=-229 GT:PL:GQ 1/1:195,202,0:99 chr2 183616748 . G C 151 . DP=78;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,45,26;MQ=60;FQ=-241 GT:PL:GQ 1/1:184,214,0:99 chr2 183622547 . T G 42.3 . DP=6;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:75,15,0:27 chr2 183627504 . A G 197 . DP=69;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,44;MQ=60;FQ=-229 GT:PL:GQ 1/1:230,202,0:99 chr2 183627619 . C G 125 . DP=10;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:158,21,0:39 chr2 183793048 . G C 51 . DP=29;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,10,2,16;MQ=60;FQ=54;PV4=1,3.7e-12,1,1 GT:PL:GQ 0/1:81,0,161:84 chr2 183793383 . T C 20 . DP=3;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:52,9,0:15 chr2 183793398 . A G 71 . DP=8;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:104,24,0:45 chr2 183799558 . G C 222 . DP=14;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,9;MQ=60;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr2 183827018 . G A 136 . DP=32;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,8,22;MQ=60;FQ=-117 GT:PL:GQ 1/1:169,90,0:99 chr2 183851058 . C T 6.02 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr2 183988984 . C G 20 . DP=3;VDB=0.0156;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:52,9,0:15 chr2 183995742 . A C 192 . DP=8;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,4,4;MQ=60;FQ=-51 GT:PL:GQ 1/1:225,24,0:45 chr2 183998237 . C T 222 . DP=20;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,14,6;MQ=58;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr2 185243700 . C T 77 . DP=13;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,0,4,1;MQ=58;FQ=80;PV4=0.38,0.42,0.11,1 GT:PL:GQ 0/1:107,0,143:99 chr2 185798504 . A C 38 . DP=25;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,10,2,11;MQ=60;FQ=41;PV4=1,2.2e-12,1,1 GT:PL:GQ 0/1:68,0,187:71 chr2 185800905 . A T 222 . DP=108;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,49,56;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 185801747 . G A 79 . DP=40;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,15,1,20;MQ=60;FQ=82;PV4=0.32,6.6e-16,1,0.23 GT:PL:GQ 0/1:109,0,251:99 chr2 185801755 . A G 130 . DP=36;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,32;MQ=60;FQ=-132 GT:PL:GQ 1/1:163,105,0:99 chr2 185802211 . CACAA CACAACAA 217 . INDEL;DP=30;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,9,6,4;MQ=59;FQ=212;PV4=0.43,1,0.11,0.44 GT:PL:GQ 0/1:255,0,247:99 chr2 185802243 . C A 42 . DP=37;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,8,12,3;MQ=60;FQ=45;PV4=0.3,1.8e-17,1,0.45 GT:PL:GQ 0/1:72,0,255:75 chr2 185802363 . A G 222 . DP=79;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,39,31;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr2 185803364 . C G 225 . DP=110;VDB=0.0399;AF1=0.5;AC1=1;DP4=31,26,25,25;MQ=60;FQ=225;PV4=0.7,1,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr2 186610344 . T G 222 . DP=35;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,5,28;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr2 186610388 . G A 79 . DP=15;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,15;MQ=60;FQ=-72 GT:PL:GQ 1/1:112,45,0:87 chr2 186611566 . C A 91 . DP=26;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,2,22;MQ=59;FQ=-99 GT:PL:GQ 1/1:124,72,0:99 chr2 186611938 . G A 173 . DP=16;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,16,0;MQ=60;FQ=-75 GT:PL:GQ 1/1:206,48,0:93 chr2 186625770 . A G 76 . DP=11;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,8,3;MQ=60;FQ=-60 GT:PL:GQ 1/1:109,33,0:63 chr2 186627943 . T C 183 . DP=39;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,19,20;MQ=60;FQ=-144 GT:PL:GQ 1/1:216,117,0:99 chr2 186629349 . G A 183 . DP=23;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,5,18;MQ=58;FQ=-96 GT:PL:GQ 1/1:216,69,0:99 chr2 186654592 . A G 175 . DP=39;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,30,9;MQ=59;FQ=-144 GT:PL:GQ 1/1:208,117,0:99 chr2 186655726 . G A 200 . DP=29;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,16,12;MQ=60;FQ=-111 GT:PL:GQ 1/1:233,84,0:99 chr2 186656657 . C T 222 . DP=40;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,22;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr2 186656956 . T C 222 . DP=51;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,19,28;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr2 186657089 . C A 147 . DP=18;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,8,10;MQ=60;FQ=-81 GT:PL:GQ 1/1:180,54,0:99 chr2 186658056 . G A 202 . DP=58;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,24,33;MQ=60;FQ=-199 GT:PL:GQ 1/1:235,172,0:99 chr2 186658438 . C T 222 . DP=45;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,27;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr2 186658565 . G T 222 . DP=26;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,13,13;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr2 186659359 . G T 186 . DP=40;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,14;MQ=60;FQ=-141 GT:PL:GQ 1/1:219,114,0:99 chr2 186661673 . A G 222 . DP=94;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,43,48;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 186664473 . T C 222 . DP=31;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,6;MQ=59;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr2 186664963 . C A 167 . DP=36;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,16;MQ=59;FQ=-126 GT:PL:GQ 1/1:200,99,0:99 chr2 186665432 . G A 145 . DP=53;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,22,15;MQ=59;FQ=-138 GT:PL:GQ 1/1:178,111,0:99 chr2 186665824 . A G 215 . DP=75;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,47,24;MQ=59;FQ=-241 GT:PL:GQ 1/1:248,214,0:99 chr2 186667121 . T C 157 . DP=53;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,25,24;MQ=60;FQ=-175 GT:PL:GQ 1/1:190,148,0:99 chr2 186670104 . A C 132 . DP=28;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,18,7;MQ=60;FQ=-102 GT:PL:GQ 1/1:165,75,0:99 chr2 186670780 . T A 183 . DP=42;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,28,13;MQ=59;FQ=-150 GT:PL:GQ 1/1:216,123,0:99 chr2 186670979 . T C 222 . DP=92;VDB=0.0345;AF1=1;AC1=2;DP4=0,1,41,46;MQ=59;FQ=-267;PV4=1,1,1,1 GT:PL:GQ 1/1:255,240,0:99 chr2 186671357 . G A 218 . DP=35;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,21,13;MQ=59;FQ=-129 GT:PL:GQ 1/1:251,102,0:99 chr2 186671912 . G A 222 . DP=90;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,50,36;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 186678241 . ATTTT ATTTTT 35 . INDEL;DP=4;VDB=0.0287;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:75,12,0:21 chr2 186678887 . T C 97 . DP=20;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,18;MQ=60;FQ=-84 GT:PL:GQ 1/1:130,57,0:99 chr2 186680041 . G T 44.3 . DP=6;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,4,1;MQ=55;FQ=-42 GT:PL:GQ 1/1:77,15,0:27 chr2 186697876 . A G 222 . DP=114;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,53,55;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 187364878 . A G 32 . DP=13;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,1,9,0;MQ=60;FQ=35;PV4=0.31,1.2e-12,1,0.026 GT:PL:GQ 0/1:62,0,102:65 chr2 187455278 . C T 70.1 . DP=6;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,0,6;MQ=56;FQ=-45 GT:PL:GQ 1/1:103,18,0:33 chr2 187487160 . G A 222 . DP=101;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,39,61;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 187490371 . T G 74 . DP=10;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,10;MQ=58;FQ=-57 GT:PL:GQ 1/1:107,30,0:57 chr2 187497988 . A G 114 . DP=9;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,0,5,1;MQ=60;FQ=45;PV4=1,0.37,1,1 GT:PL:GQ 0/1:144,0,72:75 chr2 187501648 . A G 55 . DP=13;VDB=0.0001;AF1=0.5;AC1=1;DP4=7,0,4,0;MQ=58;FQ=58;PV4=1,1,1,1 GT:PL:GQ 0/1:85,0,127:88 chr2 187501682 . G A 184 . DP=48;VDB=0.0033;AF1=0.5;AC1=1;DP4=22,2,23,1;MQ=59;FQ=187;PV4=1,0.094,0.077,1 GT:PL:GQ 0/1:214,0,246:99 chr2 187532010 . G T 48 . DP=14;VDB=0.0343;AF1=0.5;AC1=1;DP4=2,3,1,7;MQ=60;FQ=51;PV4=0.51,0.0012,1,0.23 GT:PL:GQ 0/1:78,0,112:81 chr2 187532373 . T G 90 . DP=51;VDB=0.0271;AF1=0.5;AC1=1;DP4=20,2,26,2;MQ=60;FQ=93;PV4=1,6.8e-17,1,0.11 GT:PL:GQ 0/1:120,0,210:99 chr2 187532417 . G A 222 . DP=68;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,39,22;MQ=60;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr2 187558960 . G A 186 . DP=45;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,8,16,3;MQ=59;FQ=189;PV4=0.3,0.24,1,1 GT:PL:GQ 0/1:216,0,255:99 chr2 187559047 . gcaacaacaacaacaaca gCAAcaacaacaacaacaaca 214 . INDEL;DP=72;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,23,14;MQ=59;FQ=-146 GT:PL:GQ 1/1:255,111,0:99 chr2 187608102 . TCCCCCCC TCCCCCCCC 33.8 . INDEL;DP=35;VDB=0.0380;AF1=0.543;AC1=1;DP4=6,2,14,8;MQ=60;FQ=-26.5;PV4=0.68,1,1,0.2 GT:PL:GQ 0/1:71,0,8:11 chr2 187611748 . G A 151 . DP=52;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,44,8;MQ=59;FQ=-184 GT:PL:GQ 1/1:184,157,0:99 chr2 187627567 . G A 225 . DP=74;VDB=0.0384;AF1=0.5;AC1=1;DP4=13,25,6,26;MQ=60;FQ=225;PV4=0.18,0.0031,1,0.47 GT:PL:GQ 0/1:255,0,255:99 chr2 187692908 . T G 225 . DP=52;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,8,14,12;MQ=60;FQ=225;PV4=0.4,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 187692983 . T C 112 . DP=46;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,15,10,10;MQ=60;FQ=115;PV4=0.77,2.2e-18,1,1 GT:PL:GQ 0/1:142,0,255:99 chr2 187693003 . A T 128 . DP=48;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,16,9,13;MQ=60;FQ=131;PV4=0.76,3.3e-14,1,0.083 GT:PL:GQ 0/1:158,0,255:99 chr2 187693044 . C T 225 . DP=38;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,14,5,12;MQ=60;FQ=224;PV4=0.71,1,1,1 GT:PL:GQ 0/1:255,0,254:99 chr2 187693104 . C T 117 . DP=23;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,10,0,10;MQ=60;FQ=120;PV4=0.23,1,1,0.49 GT:PL:GQ 0/1:147,0,233:99 chr2 187694410 . C T 76 . DP=22;VDB=0.0081;AF1=0.5;AC1=1;DP4=8,1,12,1;MQ=60;FQ=79;PV4=1,2.2e-10,1,0.11 GT:PL:GQ 0/1:106,0,170:99 chr2 187697883 . A G 135 . DP=23;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,2,7,7;MQ=59;FQ=138;PV4=0.23,5.7e-10,0.22,1 GT:PL:GQ 0/1:165,0,175:99 chr2 187697996 . C T 78 . DP=20;VDB=0.0053;AF1=0.5;AC1=1;DP4=5,5,3,6;MQ=60;FQ=81;PV4=0.65,3.7e-05,1,1 GT:PL:GQ 0/1:108,0,213:99 chr2 187698019 . G T 144 . DP=18;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,7,2,6;MQ=60;FQ=147;PV4=1,0.43,1,1 GT:PL:GQ 0/1:174,0,191:99 chr2 187698037 . G A 205 . DP=12;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-63 GT:PL:GQ 1/1:238,36,0:69 chr2 187698707 . C T 225 . DP=80;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,29,12,24;MQ=60;FQ=225;PV4=1,0.3,1,0.03 GT:PL:GQ 0/1:255,0,255:99 chr2 187702055 . G A 51 . DP=82;VDB=0.0392;AF1=0.5;AC1=1;DP4=41,10,21,9;MQ=60;FQ=54;PV4=0.29,3.9e-31,1,0.25 GT:PL:GQ 0/1:81,0,255:84 chr2 187709415 . AC A 43.5 . INDEL;DP=8;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,0,2,1;MQ=60;FQ=46.4;PV4=0.37,1,1,1 GT:PL:GQ 0/1:81,0,100:84 chr2 187713866 . C G 21 . DP=10;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,2,1,4;MQ=60;FQ=24;PV4=1,0.00013,1,1 GT:PL:GQ 0/1:51,0,79:54 chr2 188216807 . T C 164 . DP=75;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,58,14;MQ=59;FQ=-244 GT:PL:GQ 1/1:197,217,0:99 chr2 188243633 . A G 13 . DP=2;VDB=0.0155;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr2 188250301 . T A 199 . DP=19;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,8,11;MQ=60;FQ=-84 GT:PL:GQ 1/1:232,57,0:99 chr2 189448896 . A T 17.3 . DP=8;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:50,15,0:25 chr2 189849773 . A G 24 . DP=7;VDB=0.0007;AF1=0.5;AC1=1;DP4=2,1,2,1;MQ=60;FQ=27;PV4=1,0.0006,1,0.11 GT:PL:GQ 0/1:54,0,93:57 chr2 189855166 . A G 48 . DP=16;VDB=0.0334;AF1=0.5;AC1=1;DP4=2,10,0,4;MQ=59;FQ=51;PV4=1,1,1,1 GT:PL:GQ 0/1:78,0,224:81 chr2 189855674 . T A 12.3 . DP=6;VDB=0.0125;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=56;FQ=15.1;PV4=1,0.00019,0.19,0.19 GT:PL:GQ 0/1:42,0,85:44 chr2 189864026 . C T 48 . DP=21;VDB=0.0042;AF1=0.5;AC1=1;DP4=8,0,9,1;MQ=60;FQ=51;PV4=1,6.1e-11,1,0.44 GT:PL:GQ 0/1:78,0,147:81 chr2 189864582 . T C 102 . DP=37;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,14,4,13;MQ=60;FQ=105;PV4=1,2.3e-12,1,0.38 GT:PL:GQ 0/1:132,0,255:99 chr2 189866199 . T A 75 . DP=51;VDB=0.0373;AF1=0.5;AC1=1;DP4=22,10,13,4;MQ=59;FQ=78;PV4=0.74,5.4e-18,0.33,1 GT:PL:GQ 0/1:105,0,255:99 chr2 189867205 . G A 57 . DP=12;VDB=0.0143;AF1=0.5;AC1=1;DP4=0,8,0,4;MQ=60;FQ=60;PV4=1,1,1,1 GT:PL:GQ 0/1:87,0,127:90 chr2 189875421 . T G 222 . DP=78;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,45,30;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr2 189899572 . T C 23 . DP=3;VDB=0.0089;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:55,9,0:15 chr2 189901295 . G A 12 . DP=2;VDB=0.0186;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr2 189907937 . A G 222 . DP=28;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,12,16;MQ=60;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr2 189918337 . T C 28 . DP=3;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:60,9,0:16 chr2 189918787 . C T 181 . DP=18;VDB=0.0325;AF1=1;AC1=2;DP4=0,0,6,11;MQ=60;FQ=-78 GT:PL:GQ 1/1:214,51,0:99 chr2 189923104 . A G 203 . DP=53;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,44,8;MQ=60;FQ=-184 GT:PL:GQ 1/1:236,157,0:99 chr2 189923434 . A C 3.98 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=47;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr2 189923630 . ATTTTTTTTTTTT ATTTTTTTTTTT,ATTTTTTTTTT 28.5 . INDEL;DP=51;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,15,26;MQ=59;FQ=-146 GT:PL:GQ 1/1:69,111,0,63,55,51:99 chr2 189925548 . T A 167 . DP=22;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,7,13;MQ=60;FQ=-87 GT:PL:GQ 1/1:200,60,0:99 chr2 189927506 . C G 20 . DP=3;VDB=0.0107;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:52,9,0:15 chr2 189932831 . T C 195 . DP=51;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,25,25;MQ=60;FQ=-178 GT:PL:GQ 1/1:228,151,0:99 chr2 189936687 . T G 68 . DP=9;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:101,27,0:51 chr2 189974958 . G T 53 . DP=14;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:86,42,0:81 chr2 190313396 . A G 215 . DP=11;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,7,3;MQ=58;FQ=-57 GT:PL:GQ 1/1:248,30,0:57 chr2 190319990 . A G 185 . DP=30;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,27,0;MQ=60;FQ=-108 GT:PL:GQ 1/1:218,81,0:99 chr2 190323530 . A G 222 . DP=111;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,73,30;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 190327076 . C T 80.5 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:113,12,0:21 chr2 190327126 . C G 86 . DP=15;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:119,42,0:81 chr2 190430177 . A G 168 . DP=50;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,25,24;MQ=60;FQ=-175 GT:PL:GQ 1/1:201,148,0:99 chr2 190443304 . C T 44 . DP=28;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,20;MQ=60;FQ=-87 GT:PL:GQ 1/1:77,60,0:99 chr2 190444630 . C G 222 . DP=83;VDB=0.0322;AF1=1;AC1=2;DP4=0,1,18,63;MQ=60;FQ=-245;PV4=1,0.38,1,0.26 GT:PL:GQ 1/1:255,218,0:99 chr2 190448047 . T C,A 205 . DP=62;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,52,9;MQ=60;FQ=-208 GT:PL:GQ 1/1:238,181,0,219,144,216:99 chr2 190531426 . G A 212 . DP=87;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,38,48;MQ=59;FQ=-282 GT:PL:GQ 1/1:245,255,0:99 chr2 190593168 . attttt a 88.5 . INDEL;DP=9;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,3,0,4;MQ=57;FQ=91.5;PV4=1,0.12,0.18,1 GT:PL:GQ 0/1:126,0,190:99 chr2 190593311 . C G 222 . DP=22;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,18,2;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr2 190595258 . G T 155 . DP=110;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,37,69;MQ=60;FQ=-282 GT:PL:GQ 1/1:188,255,0:99 chr2 190602513 . T C 49.3 . DP=5;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:82,15,0:27 chr2 190611084 . T C 10.4 . DP=4;VDB=0.0222;AF1=0.5004;AC1=1;DP4=1,0,3,0;MQ=60;FQ=3.4;PV4=1,0.0089,1,0.33 GT:PL:GQ 0/1:40,0,28:31 chr2 190611414 . T C 215 . DP=21;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,20;MQ=58;FQ=-90 GT:PL:GQ 1/1:248,63,0:99 chr2 190611459 . A G 21.3 . DP=5;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:54,15,0:26 chr2 190617643 . A G 222 . DP=50;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,26;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr2 190636411 . C G 66 . DP=9;VDB=0.0081;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=67.6;PV4=1,0.34,1,1 GT:PL:GQ 0/1:96,0,100:98 chr2 190640475 . A G 12.3 . DP=15;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,8,1,4;MQ=60;FQ=15.1;PV4=1,3.3e-07,1,1 GT:PL:GQ 0/1:42,0,207:44 chr2 190643257 . G A 173 . DP=23;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,8,3,7;MQ=60;FQ=176;PV4=1,1,1,1 GT:PL:GQ 0/1:203,0,251:99 chr2 190647108 . T C 59 . DP=31;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,30,0;MQ=60;FQ=-117 GT:PL:GQ 1/1:92,90,0:99 chr2 190670539 . TAAAAAAAAAAA TAAAAAAAAAAAA 6.71 . INDEL;DP=13;VDB=0.0398;AF1=1;AC1=2;DP4=0,1,3,5;MQ=60;FQ=-50.5;PV4=1,1,1,0.29 GT:PL:GQ 1/1:46,16,0:18 chr2 191159232 . A G 31.3 . DP=5;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:64,15,0:27 chr2 191161622 . T C 222 . DP=107;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,41,58;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 191175639 . GTTTT GTTT 186 . INDEL;DP=19;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,7,11;MQ=60;FQ=-88.5 GT:PL:GQ 1/1:227,54,0:99 chr2 191184475 . A G 222 . DP=72;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,41;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr2 191184524 . C T 222 . DP=41;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,8,31;MQ=59;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr2 191231458 . G A 91 . DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,15,21,7;MQ=60;FQ=94;PV4=0.18,7.6e-26,1,1 GT:PL:GQ 0/1:121,0,255:99 chr2 191235901 . A C 222 . DP=74;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,27,44;MQ=59;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr2 191354658 . C CCT 214 . INDEL;DP=36;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,10,25;MQ=60;FQ=-140 GT:PL:GQ 1/1:255,105,0:99 chr2 191364708 . G A 222 . DP=69;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,32,35;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr2 191373775 . C T 28.1 . DP=10;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:61,21,0:38 chr2 191375375 . G A 43.1 . DP=7;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:76,18,0:33 chr2 191379268 . G A 195 . DP=25;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,8;MQ=60;FQ=-99 GT:PL:GQ 1/1:228,72,0:99 chr2 191390126 . G A 113 . DP=7;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:146,21,0:39 chr2 191552148 . C T 91 . DP=15;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,15;MQ=54;FQ=-72 GT:PL:GQ 1/1:124,45,0:87 chr2 191775183 . A G 49 . DP=6;VDB=0.0163;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=41.6;PV4=1,1,1,1 GT:PL:GQ 0/1:79,0,69:72 chr2 191848312 . T C 111 . DP=6;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:144,15,0:27 chr2 191899262 . G A 128 . DP=84;VDB=0.0365;AF1=0.5;AC1=1;DP4=38,12,28,6;MQ=59;FQ=131;PV4=0.59,8.4e-16,1,0.21 GT:PL:GQ 0/1:158,0,255:99 chr2 191919292 . G A 7.8 . DP=29;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,6,3,6;MQ=59;FQ=10.4;PV4=0.11,8.4e-12,1,0.35 GT:PL:GQ 0/1:37,0,255:39 chr2 191922841 . G A 149 . DP=50;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,13,32;MQ=59;FQ=-162 GT:PL:GQ 1/1:182,135,0:99 chr2 191923543 . G C 35 . DP=3;VDB=0.0169;AF1=0.5002;AC1=1;DP4=0,1,0,2;MQ=60;FQ=6.2;PV4=1,0.33,1,0.33 GT:PL:GQ 0/1:65,0,32:35 chr2 191929596 . C T 133 . DP=24;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,5,6,9;MQ=59;FQ=136;PV4=1,1.6e-09,0.23,0.31 GT:PL:GQ 0/1:163,0,190:99 chr2 191996518 . T C 143 . DP=54;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,10,19,8;MQ=60;FQ=146;PV4=0.57,2.1e-21,0.17,0.2 GT:PL:GQ 0/1:173,0,255:99 chr2 192161058 . GTTTTTTTT GTTTTTTTTT 4.5 . INDEL;DP=9;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:43,18,0:17 chr2 192214833 . A T 198 . DP=16;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,14,1;MQ=58;FQ=-72 GT:PL:GQ 1/1:231,45,0:87 chr2 192214966 . T C 120 . DP=21;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,16;MQ=58;FQ=-84 GT:PL:GQ 1/1:153,57,0:99 chr2 192225294 . A G 55 . DP=22;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,19,0;MQ=59;FQ=-84 GT:PL:GQ 1/1:88,57,0:99 chr2 192225477 . Gtgttgttgttgttgttgttgttgttgttgttgttgttg GTGTTGTtgttgttgttgttgttgttgttgttgttgttgttgttg,GTGTTGTTGTtgttgttgttgttgttgttgttgttgttgttgttgttg 36.2 . INDEL;DP=44;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,5;MQ=37;FQ=-40.5 GT:PL:GQ 1/1:134,65,59,79,0,70:10 chr2 192227230 . T C 89 . DP=14;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,14;MQ=60;FQ=-69 GT:PL:GQ 1/1:122,42,0:81 chr2 192247836 . C T 120 . DP=8;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:153,21,0:39 chr2 192250543 . A G 217 . DP=47;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,35,10;MQ=60;FQ=-162 GT:PL:GQ 1/1:250,135,0:99 chr2 192250568 . T C 222 . DP=70;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,48,14;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr2 192250726 . G A 208 . DP=108;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,28,75;MQ=60;FQ=-282 GT:PL:GQ 1/1:241,255,0:99 chr2 192279327 . T C 222 . DP=90;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,49,37;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 192701393 . A G 222 . DP=39;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,4,33;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr2 192701407 . G C 174 . DP=36;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,15,1,17;MQ=60;FQ=177;PV4=0.6,0.42,1,1 GT:PL:GQ 0/1:204,0,225:99 chr2 192701453 . C T 144 . DP=21;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,11,1,8;MQ=60;FQ=147;PV4=1,1,1,1 GT:PL:GQ 0/1:174,0,197:99 chr2 192711162 . A C 222 . DP=66;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,38,26;MQ=59;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr2 192820898 . T G 136 . DP=8;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:169,24,0:45 chr2 193056737 . C A 127 . DP=52;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,23,5,19;MQ=60;FQ=130;PV4=0.46,1.8e-22,0.15,1 GT:PL:GQ 0/1:157,0,255:99 chr2 196602582 . AAATA AAATAATA 182 . INDEL;DP=8;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,8,0;MQ=51;FQ=-58.5 GT:PL:GQ 1/1:223,24,0:45 chr2 196636662 . C G 222 . DP=31;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,5,26;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr2 196659041 . C G 92 . DP=15;VDB=0.0002;AF1=0.5;AC1=1;DP4=9,0,6,0;MQ=60;FQ=95;PV4=1,1,1,1 GT:PL:GQ 0/1:122,0,147:99 chr2 196663997 . T C 222 . DP=23;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,19,4;MQ=59;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr2 196673533 . A G 145 . DP=126;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,48,35;MQ=60;FQ=-277 GT:PL:GQ 1/1:178,250,0:99 chr2 196681284 . A T 82.5 . DP=4;VDB=0.0027;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:115,12,0:21 chr2 196682630 . C A 17.1 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:49,9,0:15 chr2 196791276 . T G 151 . DP=55;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,9,44;MQ=60;FQ=-187 GT:PL:GQ 1/1:184,160,0:99 chr2 196851911 . G A 126 . DP=29;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,4,25;MQ=60;FQ=-114 GT:PL:GQ 1/1:159,87,0:99 chr2 196866420 . C T 222 . DP=90;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,70,19;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 196891449 . T C 59 . DP=12;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:92,33,0:63 chr2 196912067 . A G 222 . DP=19;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,5;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr2 196915991 . A G 66 . DP=16;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,7;MQ=60;FQ=-54 GT:PL:GQ 1/1:99,27,0:51 chr2 196935811 . T C 222 . DP=35;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,17,16;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr2 197004439 . A G 168 . DP=26;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,18,7;MQ=59;FQ=-102 GT:PL:GQ 1/1:201,75,0:99 chr2 197010823 . C T 121 . DP=18;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,3,11;MQ=60;FQ=-69 GT:PL:GQ 1/1:154,42,0:81 chr2 197021141 . G A 32 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:64,9,0:16 chr2 197021276 . T C 216 . DP=113;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,66,41;MQ=60;FQ=-282 GT:PL:GQ 1/1:249,255,0:99 chr2 197021372 . T A 172 . DP=47;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,42;MQ=60;FQ=-165 GT:PL:GQ 1/1:205,138,0:99 chr2 197065889 . A G 3.41 . DP=3;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:32,6,0:4 chr2 197065964 . C A 137 . DP=67;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,52,11;MQ=59;FQ=-217 GT:PL:GQ 1/1:170,190,0:99 chr2 197066175 . T G 32.3 . DP=17;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:65,15,0:27 chr2 197084982 . T C 186 . DP=29;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,11,4,9;MQ=60;FQ=185;PV4=0.64,0.04,1,1 GT:PL:GQ 0/1:216,0,215:99 chr2 197106759 . T C 157 . DP=42;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,28,12;MQ=60;FQ=-147 GT:PL:GQ 1/1:190,120,0:99 chr2 197118729 . C T 222 . DP=64;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,45,19;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr2 197122493 . T G 143 . DP=96;VDB=0.0345;AF1=0.5;AC1=1;DP4=38,12,36,9;MQ=60;FQ=146;PV4=0.81,3.7e-32,0.47,1 GT:PL:GQ 0/1:173,0,255:99 chr2 197122662 . T C 179 . DP=62;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,29,1,28;MQ=60;FQ=182;PV4=0.61,0.38,1,1 GT:PL:GQ 0/1:209,0,255:99 chr2 197171104 . G A 6.02 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr2 197171175 . C T 142 . DP=17;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,15,2;MQ=59;FQ=-78 GT:PL:GQ 1/1:175,51,0:99 chr2 197171183 . C T 88 . DP=17;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,15,2;MQ=59;FQ=-78 GT:PL:GQ 1/1:121,51,0:99 chr2 197172816 . G A 66 . DP=10;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:99,24,0:45 chr2 197184321 . C T 165 . DP=41;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,24;MQ=60;FQ=-141 GT:PL:GQ 1/1:198,114,0:99 chr2 197208397 . C T 154 . DP=58;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,2,27,10;MQ=60;FQ=157;PV4=0.3,9.3e-19,0.25,1 GT:PL:GQ 0/1:184,0,197:99 chr2 197504545 . C G 131 . DP=38;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,6,15,6;MQ=60;FQ=134;PV4=0.5,7.1e-11,1,1 GT:PL:GQ 0/1:161,0,239:99 chr2 197534692 . C T 74 . DP=55;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,29,4,12;MQ=60;FQ=77;PV4=0.72,6.5e-20,0.068,1 GT:PL:GQ 0/1:104,0,255:99 chr2 197584504 . C T 70 . DP=10;VDB=0.0027;AF1=0.5;AC1=1;DP4=0,6,0,4;MQ=60;FQ=73;PV4=1,1,1,1 GT:PL:GQ 0/1:100,0,130:99 chr2 197594203 . G C 131 . DP=40;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,14,5,20;MQ=60;FQ=134;PV4=0.38,1.9e-20,1,0.075 GT:PL:GQ 0/1:161,0,191:99 chr2 197595762 . G A 225 . DP=87;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,39,11,29;MQ=60;FQ=225;PV4=0.045,0.076,0.15,0.48 GT:PL:GQ 0/1:255,0,255:99 chr2 197636379 . A G 55 . DP=33;VDB=0.0053;AF1=0.5;AC1=1;DP4=15,1,15,2;MQ=60;FQ=58;PV4=1,7.2e-14,1,1 GT:PL:GQ 0/1:85,0,199:88 chr2 197657761 . ttcctcctcctcctcctcctcctc ttcctcctcctcctcctc 110 . INDEL;DP=17;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,2,4,3;MQ=50;FQ=113;PV4=0.61,0.015,2e-05,1 GT:PL:GQ 0/1:148,0,255:99 chr2 197761824 . T C 47.3 . DP=5;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:80,15,0:27 chr2 197777589 . C T 74 . DP=33;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,1,14,2;MQ=59;FQ=77;PV4=1,6.9e-15,1,1 GT:PL:GQ 0/1:104,0,201:99 chr2 197863214 . C T 222 . DP=17;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,13;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr2 197863851 . C T 104 . DP=7;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:137,18,0:33 chr2 197864996 . A C 39.8 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:71,6,0:10 chr2 197866470 . T A 201 . DP=22;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,10,12;MQ=60;FQ=-93 GT:PL:GQ 1/1:234,66,0:99 chr2 197872727 . TTCTC TTCTCTCTC 214 . INDEL;DP=22;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,1,17;MQ=45;FQ=-88.5 GT:PL:GQ 1/1:255,54,0:99 chr2 197953372 . TAAGTCAAGTCAA TAAGTCAA 214 . INDEL;DP=39;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,34,5;MQ=56;FQ=-152 GT:PL:GQ 1/1:255,117,0:99 chr2 197954780 . A G,T 217 . DP=46;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,11,34;MQ=59;FQ=-159 GT:PL:GQ 1/1:250,132,0,246,112,243:99 chr2 197986048 . T C 222 . DP=67;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,54,9;MQ=60;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr2 197989945 . T C 116 . DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:149,18,0:33 chr2 197990909 . G A 13.9 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr2 198001443 . C T 222 . DP=24;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,2,21;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr2 198011904 . G A 222 . DP=58;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,21,34;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr2 198175297 . G C 101 . DP=14;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,10,2;MQ=60;FQ=-63 GT:PL:GQ 1/1:134,36,0:69 chr2 198257795 . T C 225 . DP=78;VDB=0.0322;AF1=0.5;AC1=1;DP4=23,14,33,8;MQ=60;FQ=225;PV4=0.084,0.35,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr2 198265526 . A G 225 . DP=117;VDB=0.0380;AF1=0.5;AC1=1;DP4=34,16,43,18;MQ=60;FQ=225;PV4=0.84,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 198266943 . C T 68 . DP=11;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:101,33,0:63 chr2 198267770 . GAAAA GAAAAAA 108 . INDEL;DP=13;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,6,1,3;MQ=60;FQ=111;PV4=1,1,1,0.068 GT:PL:GQ 0/1:146,0,220:99 chr2 198283305 . T C 88 . DP=22;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,7,4,8;MQ=60;FQ=91;PV4=1,1.3e-09,1,1 GT:PL:GQ 0/1:118,0,205:99 chr2 198355135 . TTGTGT TTGTGTGT 121 . INDEL;DP=15;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,4,1,6;MQ=58;FQ=121;PV4=0.56,1,0.19,1 GT:PL:GQ 0/1:159,0,158:99 chr2 198362018 . T C 27 . DP=12;VDB=0.0033;AF1=0.5;AC1=1;DP4=3,2,4,2;MQ=60;FQ=30;PV4=1,1.1e-07,1,0.22 GT:PL:GQ 0/1:57,0,139:60 chr2 198498595 . C T 109 . DP=127;VDB=0.0380;AF1=0.5;AC1=1;DP4=42,38,20,26;MQ=59;FQ=112;PV4=0.36,1.9e-37,0.43,1 GT:PL:GQ 0/1:139,0,255:99 chr2 198508951 . G A 140 . DP=69;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,18,22,8;MQ=60;FQ=143;PV4=0.13,2.1e-21,1,0.29 GT:PL:GQ 0/1:170,0,255:99 chr2 198511086 . G A 30 . DP=4;VDB=0.0167;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=30.5;PV4=1,0.21,1,1 GT:PL:GQ 0/1:60,0,61:60 chr2 198563642 . T C 16.9 . DP=2;VDB=0.0153;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:48,6,0:10 chr2 198643631 . G A 225 . DP=97;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,17,33,24;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 198950240 . G A 225 . DP=90;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,27,17,19;MQ=60;FQ=225;PV4=1,0.42,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 200173684 . T G 222 . DP=84;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,18,56;MQ=60;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr2 200245245 . C G 93 . DP=12;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:126,33,0:63 chr2 200298313 . A G 189 . DP=36;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,5,31;MQ=60;FQ=-135 GT:PL:GQ 1/1:222,108,0:99 chr2 200323452 . A G 54 . DP=13;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,4,1,7;MQ=60;FQ=57;PV4=1,4e-06,1,1 GT:PL:GQ 0/1:84,0,114:87 chr2 200709099 . T C 123 . DP=62;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,9,24,13;MQ=59;FQ=126;PV4=1,7.9e-28,1,1 GT:PL:GQ 0/1:153,0,255:99 chr2 200710706 . T G 71 . DP=3;VDB=0.0189;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:103,9,0:16 chr2 200713751 . A C 47 . DP=16;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,8,0,8;MQ=60;FQ=50;PV4=1,3.4e-05,1,1 GT:PL:GQ 0/1:77,0,136:80 chr2 200790216 . C T 225 . DP=30;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,3,5,8;MQ=60;FQ=220;PV4=0.027,1,1,1 GT:PL:GQ 0/1:255,0,248:99 chr2 200813126 . T C 120 . DP=184;VDB=0.0399;AF1=0.5;AC1=1;DP4=58,43,49,30;MQ=60;FQ=123;PV4=0.54,3.9e-67,1,0.25 GT:PL:GQ 0/1:150,0,255:99 chr2 200820505 . T G 89 . DP=15;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:122,39,0:75 chr2 200873144 . aatacaaaaaaaacttga aa 214 . INDEL;DP=38;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,13,13;MQ=31;FQ=-113 GT:PL:GQ 1/1:255,78,0:99 chr2 201171014 . G C 84 . DP=98;VDB=0.0380;AF1=1;AC1=2;DP4=2,1,27,15;MQ=59;FQ=-74;PV4=1,4.1e-12,1,1 GT:PL:GQ 1/1:117,47,0:91 chr2 201171191 . C G 176 . DP=90;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,37,13,25;MQ=60;FQ=179;PV4=0.35,1.2e-18,1,0.17 GT:PL:GQ 0/1:206,0,255:99 chr2 201171207 . G C 222 . DP=81;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,60;MQ=60;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr2 201194279 . C A 80 . DP=11;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:113,33,0:63 chr2 201254049 . G C 222 . DP=108;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,49,53;MQ=60;FQ=-282;PV4=0.49,0.0038,0.44,1 GT:PL:GQ 1/1:255,255,0:99 chr2 201254171 . A G 222 . DP=37;VDB=0.0190;AF1=1;AC1=2;DP4=0,1,4,31;MQ=60;FQ=-99;PV4=1,1,1,0.26 GT:PL:GQ 1/1:255,72,0:99 chr2 201277181 . T C 108 . DP=19;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,15;MQ=60;FQ=-81 GT:PL:GQ 1/1:141,54,0:99 chr2 201334852 . A G 90 . DP=19;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,2,15;MQ=60;FQ=-78 GT:PL:GQ 1/1:123,51,0:99 chr2 201355106 . G A 203 . DP=33;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,9,21;MQ=60;FQ=-117 GT:PL:GQ 1/1:236,90,0:99 chr2 201371768 . G T 151 . DP=24;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,9,3,6;MQ=59;FQ=154;PV4=1,1,1,1 GT:PL:GQ 0/1:181,0,255:99 chr2 201397647 . A C 52.5 . DP=4;VDB=0.0161;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:85,12,0:21 chr2 201437214 . A G 4.13 . DP=28;VDB=0.0190;AF1=0.4998;AC1=1;DP4=4,13,1,9;MQ=60;FQ=6.2;PV4=0.62,4.1e-15,1,1 GT:PL:GQ 0/1:32,0,255:31 chr2 201437334 . T C 76 . DP=89;VDB=0.0322;AF1=0.5;AC1=1;DP4=37,13,28,9;MQ=60;FQ=79;PV4=1,5.9e-30,1,1 GT:PL:GQ 0/1:106,0,255:99 chr2 201445152 . C T 20 . DP=5;VDB=0.0133;AF1=0.5;AC1=1;DP4=2,0,2,1;MQ=60;FQ=18.9;PV4=1,0.023,1,1 GT:PL:GQ 0/1:50,0,48:49 chr2 201451006 . C T 101 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,10,6,6;MQ=59;FQ=104;PV4=0.7,4.9e-12,0.13,1 GT:PL:GQ 0/1:131,0,255:99 chr2 201464423 . G A 69 . DP=37;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,8,4,21;MQ=59;FQ=72;PV4=1,2.2e-16,1,0.31 GT:PL:GQ 0/1:99,0,157:99 chr2 201473674 . G A 16.1 . DP=7;VDB=0.0151;AF1=0.5;AC1=1;DP4=5,0,2,0;MQ=60;FQ=19.1;PV4=1,0.13,1,0.38 GT:PL:GQ 0/1:46,0,123:49 chr2 201474234 . C T 91 . DP=31;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,10,3,13;MQ=60;FQ=94;PV4=0.67,7.7e-13,1,1 GT:PL:GQ 0/1:121,0,244:99 chr2 201485747 . G T 61 . DP=10;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:94,30,0:57 chr2 201485830 . G A 202 . DP=48;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,8,16,4;MQ=60;FQ=205;PV4=0.51,0.3,1,1 GT:PL:GQ 0/1:232,0,255:99 chr2 201488758 . A G 221 . DP=33;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,18;MQ=59;FQ=-126 GT:PL:GQ 1/1:254,99,0:99 chr2 201501568 . A G 101 . DP=55;VDB=0.0345;AF1=0.5;AC1=1;DP4=29,4,18,4;MQ=60;FQ=104;PV4=0.7,9.8e-20,1,1 GT:PL:GQ 0/1:131,0,255:99 chr2 201505953 . C T 12.3 . DP=10;VDB=0.0192;AF1=0.5;AC1=1;DP4=2,6,0,2;MQ=58;FQ=15.1;PV4=1,0.35,1,1 GT:PL:GQ 0/1:42,0,194:44 chr2 201515939 . T C 174 . DP=16;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,15;MQ=60;FQ=-72 GT:PL:GQ 1/1:207,45,0:87 chr2 201521472 . G A 65 . DP=21;VDB=0.0042;AF1=0.5;AC1=1;DP4=10,1,9,1;MQ=60;FQ=68;PV4=1,3.4e-10,1,1 GT:PL:GQ 0/1:95,0,178:98 chr2 201521485 . C T 32 . DP=31;VDB=0.0216;AF1=0.5;AC1=1;DP4=14,1,15,1;MQ=59;FQ=35;PV4=1,3e-14,1,1 GT:PL:GQ 0/1:62,0,187:65 chr2 201521509 . C T 203 . DP=52;VDB=0.0298;AF1=0.5;AC1=1;DP4=24,2,21,2;MQ=60;FQ=204;PV4=1,0.16,1,1 GT:PL:GQ 0/1:233,0,236:99 chr2 201521731 . A G 35 . DP=18;VDB=0.0399;AF1=0.5;AC1=1;DP4=1,9,0,7;MQ=60;FQ=38;PV4=1,5.8e-11,1,1 GT:PL:GQ 0/1:65,0,193:68 chr2 201526330 . A G 222 . DP=145;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,80,58;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 201526368 . C G 222 . DP=154;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,65,84;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 201677454 . C T 29 . DP=21;VDB=0.0053;AF1=0.5;AC1=1;DP4=12,1,6,1;MQ=60;FQ=32;PV4=1,2.5e-05,1,0.25 GT:PL:GQ 0/1:59,0,196:62 chr2 201677791 . T C 225 . DP=30;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,4,7,16;MQ=60;FQ=84;PV4=1,0.41,1,1 GT:PL:GQ 0/1:255,0,111:99 chr2 201683695 . T C 58 . DP=40;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,12,5,15;MQ=56;FQ=61;PV4=0.5,1.3e-24,0.3,1 GT:PL:GQ 0/1:88,0,255:91 chr2 201686122 . T C 40 . DP=22;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,9,2,8;MQ=58;FQ=43;PV4=1,4.5e-10,1,1 GT:PL:GQ 0/1:70,0,218:73 chr2 201686666 . C T 73 . DP=8;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:106,24,0:45 chr2 201724360 . A G 225 . DP=37;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,5,11,7;MQ=60;FQ=225;PV4=0.5,0.29,1,0.31 GT:PL:GQ 0/1:255,0,255:99 chr2 202025131 . G A 222 . DP=96;VDB=0.0392;AF1=1;AC1=2;DP4=1,0,70,22;MQ=59;FQ=-280;PV4=1,1,1,1 GT:PL:GQ 1/1:255,253,0:99 chr2 202028490 . C T 25 . DP=36;VDB=0.0099;AF1=0.5;AC1=1;DP4=19,2,13,1;MQ=59;FQ=28;PV4=1,1.9e-19,0.39,1 GT:PL:GQ 0/1:55,0,244:58 chr2 202149416 . acg a 128 . INDEL;DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:168,12,0:21 chr2 202245244 . A G 64 . DP=28;VDB=0.0271;AF1=0.5;AC1=1;DP4=15,0,11,2;MQ=60;FQ=67;PV4=0.21,3.4e-10,1,0.23 GT:PL:GQ 0/1:94,0,176:97 chr2 202245944 . TAAAAAAAAAAAAAAAAA TAAAAAAAAAAAAAAA 17 . INDEL;DP=27;VDB=0.0384;AF1=1;AC1=2;DP4=2,1,2,12;MQ=57;FQ=-47.5;PV4=0.12,0.44,0.26,1 GT:PL:GQ 1/1:57,13,0:22 chr2 202248788 . T C 181 . DP=32;VDB=0.0140;AF1=0.5;AC1=1;DP4=11,4,16,1;MQ=60;FQ=184;PV4=0.16,1,1,1 GT:PL:GQ 0/1:211,0,245:99 chr2 202248979 . T A 167 . DP=38;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,20,2,15;MQ=59;FQ=154;PV4=0.2,0.14,0.45,1 GT:PL:GQ 0/1:197,0,181:99 chr2 202252539 . G A 212 . DP=45;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,11,13,4;MQ=60;FQ=215;PV4=0.33,0.39,1,0.4 GT:PL:GQ 0/1:242,0,255:99 chr2 202252856 . T C 152 . DP=16;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,7,2,6;MQ=58;FQ=110;PV4=0.47,0.15,0.18,0.21 GT:PL:GQ 0/1:182,0,137:99 chr2 202252873 . A C 22 . DP=9;VDB=0.0143;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=57;FQ=25;PV4=1,5.8e-05,0.15,0.37 GT:PL:GQ 0/1:52,0,116:55 chr2 202260049 . G A 222 . DP=59;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,44,14;MQ=59;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr2 202264156 . C T 225 . DP=79;VDB=0.0400;AF1=0.5;AC1=1;DP4=19,24,20,14;MQ=60;FQ=225;PV4=0.25,0.33,1,0.45 GT:PL:GQ 0/1:255,0,255:99 chr2 202272032 . T A 3.98 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr2 202284236 . cttaa cTTAATttaa 217 . INDEL;DP=52;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,13,15,8;MQ=56;FQ=217;PV4=0.57,1,0.0038,0.0074 GT:PL:GQ 0/1:255,0,255:99 chr2 202285100 . A G 123 . DP=34;VDB=0.0099;AF1=0.5;AC1=1;DP4=21,1,12,0;MQ=60;FQ=126;PV4=1,1,1,1 GT:PL:GQ 0/1:153,0,218:99 chr2 202342402 . G T 35 . DP=16;VDB=0.0053;AF1=0.5;AC1=1;DP4=9,0,6,1;MQ=31;FQ=38;PV4=0.44,1.8e-09,1,1 GT:PL:GQ 0/1:65,0,111:68 chr2 202344179 . GTTTTTTTTTT GTTTTTTTTT 3.96 . INDEL;DP=5;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,3,2;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:42,15,0:14 chr2 202357949 . A C 133 . DP=49;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,40,8;MQ=59;FQ=-171 GT:PL:GQ 1/1:166,144,0:99 chr2 202469361 . C T 222 . DP=46;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,23,23;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr2 202469472 . A G 107 . DP=13;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,12;MQ=58;FQ=-66 GT:PL:GQ 1/1:140,39,0:75 chr2 202499683 . C G 75.1 . DP=7;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:108,21,0:39 chr2 202501448 . T C 121 . DP=14;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,9,4;MQ=56;FQ=-66 GT:PL:GQ 1/1:154,39,0:75 chr2 202528830 . ATTTTT ATTTTTT 48.5 . INDEL;DP=54;VDB=0.0298;AF1=0.5;AC1=1;DP4=22,8,17,4;MQ=60;FQ=51.5;PV4=0.74,1,1,0.019 GT:PL:GQ 0/1:86,0,122:89 chr2 202531136 . G C 107 . DP=21;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,12,0,9;MQ=59;FQ=110;PV4=1,0.33,0.13,0.38 GT:PL:GQ 0/1:137,0,166:99 chr2 202546113 . T C 85 . DP=28;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,27,1;MQ=60;FQ=-111 GT:PL:GQ 1/1:118,84,0:99 chr2 202557702 . C T 201 . DP=28;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,7,19;MQ=59;FQ=-105 GT:PL:GQ 1/1:234,78,0:99 chr2 202566741 . T C 13 . DP=2;VDB=0.0173;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr2 202569992 . A T 222 . DP=76;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,54;MQ=60;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr2 202570232 . A G 55.1 . DP=7;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:88,18,0:33 chr2 202574825 . C T 23.8 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:55,6,0:10 chr2 202575821 . G A 222 . DP=38;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,18,20;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr2 202575907 . A G 160 . DP=14;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:193,39,0:75 chr2 202580370 . G A 219 . DP=38;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,30,1;MQ=60;FQ=-120 GT:PL:GQ 1/1:252,93,0:99 chr2 202598113 . C T 178 . DP=46;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,8,35;MQ=60;FQ=-156 GT:PL:GQ 1/1:211,129,0:99 chr2 202606639 . G A 222 . DP=22;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,3,19;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr2 202608877 . C A 27 . DP=3;VDB=0.0107;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:59,9,0:16 chr2 202625615 . C T 222 . DP=87;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,53,33;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 202688293 . A G 94 . DP=18;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,18,0;MQ=60;FQ=-81 GT:PL:GQ 1/1:127,54,0:99 chr2 202712095 . A C 212 . DP=42;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,28,14;MQ=59;FQ=-153 GT:PL:GQ 1/1:245,126,0:99 chr2 202736953 . G A 222 . DP=118;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,67,46;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 202737083 . A T 172 . DP=54;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,3,49;MQ=59;FQ=-184 GT:PL:GQ 1/1:205,157,0:99 chr2 202741256 . A T 176 . DP=30;VDB=0.0244;AF1=0.5;AC1=1;DP4=8,7,3,11;MQ=60;FQ=179;PV4=0.13,0.18,1,1 GT:PL:GQ 0/1:206,0,255:99 chr2 202741269 . G A 158 . DP=31;VDB=0.0190;AF1=0.5;AC1=1;DP4=9,9,3,9;MQ=60;FQ=161;PV4=0.26,0.19,1,1 GT:PL:GQ 0/1:188,0,255:99 chr2 202939654 . T C 142 . DP=34;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,7,8,10;MQ=59;FQ=145;PV4=0.73,1.1e-12,1,0.47 GT:PL:GQ 0/1:172,0,255:99 chr2 202955454 . G C 172 . DP=68;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,51,16;MQ=60;FQ=-229 GT:PL:GQ 1/1:205,202,0:99 chr2 202964380 . G A 164 . DP=24;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,17,6;MQ=59;FQ=-96 GT:PL:GQ 1/1:197,69,0:99 chr2 202964528 . T C 135 . DP=23;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,4,19;MQ=60;FQ=-96 GT:PL:GQ 1/1:168,69,0:99 chr2 202964986 . C A 66 . DP=23;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,22,0;MQ=60;FQ=-93 GT:PL:GQ 1/1:99,66,0:99 chr2 202965222 . A G 56 . DP=17;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,1,10;MQ=58;FQ=-60 GT:PL:GQ 1/1:89,33,0:63 chr2 202990653 . G A 23 . DP=8;VDB=0.0007;AF1=0.5;AC1=1;DP4=0,4,1,2;MQ=60;FQ=26;PV4=0.43,0.0091,1,1 GT:PL:GQ 0/1:53,0,93:56 chr2 203000810 . G A 28 . DP=5;VDB=0.0127;AF1=0.5;AC1=1;DP4=1,2,0,2;MQ=60;FQ=31;PV4=1,1,1,1 GT:PL:GQ 0/1:58,0,89:61 chr2 203003066 . GGTGTGTGTGTGTGT GGTGTGTGTGTGTGTGTGT 217 . INDEL;DP=26;VDB=0.0033;AF1=0.5;AC1=1;DP4=10,0,15,1;MQ=58;FQ=216;PV4=1,1,0.13,1 GT:PL:GQ 0/1:255,0,253:99 chr2 203029951 . T A 6.2 . DP=37;VDB=0.0345;AF1=0.4999;AC1=1;DP4=18,2,10,1;MQ=60;FQ=8.65;PV4=1,6.3e-17,1,0.31 GT:PL:GQ 0/1:35,0,248:36 chr2 203051886 . C T 166 . DP=13;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:199,39,0:75 chr2 203052947 . G A 176 . DP=120;VDB=0.0322;AF1=0.5;AC1=1;DP4=29,25,21,40;MQ=59;FQ=179;PV4=0.041,3e-28,1,0.48 GT:PL:GQ 0/1:206,0,255:99 chr2 203058233 . T C 53 . DP=26;VDB=0.0384;AF1=0.5;AC1=1;DP4=6,12,3,4;MQ=60;FQ=56;PV4=0.67,0.00011,1,0.23 GT:PL:GQ 0/1:83,0,255:86 chr2 203058861 . A G 54 . DP=20;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,2,5,5;MQ=60;FQ=57;PV4=0.35,1.4e-05,1,1 GT:PL:GQ 0/1:84,0,169:87 chr2 203079307 . T C 17.1 . DP=3;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,0,3;MQ=52;FQ=-36 GT:PL:GQ 1/1:49,9,0:15 chr2 203152355 . G A 225 . DP=71;VDB=0.0271;AF1=0.5;AC1=1;DP4=37,2,28,3;MQ=60;FQ=213;PV4=0.65,1,1,1 GT:PL:GQ 0/1:255,0,240:99 chr2 203155015 . GTTTT GTTT 70.5 . INDEL;DP=18;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,1,10,1;MQ=60;FQ=35.5;PV4=1,4.5e-11,1,0.029 GT:PL:GQ 0/1:108,0,70:73 chr2 203384776 . CTTTTTTTTTTTT CTTTTTTTTTTTTTT,CTTTTTTTTTTTTT 4.5 . INDEL;DP=13;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:50,25,7,58,0,36:17 chr2 203651475 . attttttttttttt attttttttttt 30 . INDEL;DP=41;VDB=0.0384;AF1=0.5718;AC1=1;DP4=2,9,4,13;MQ=60;FQ=-28.5;PV4=1,1,1,0.12 GT:PL:GQ 0/1:67,0,6:9 chr2 203661779 . A G 68.1 . DP=6;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:101,18,0:33 chr2 203679306 . T C 29 . DP=18;VDB=0.0190;AF1=0.5;AC1=1;DP4=9,2,5,1;MQ=60;FQ=32;PV4=1,1e-09,1,1 GT:PL:GQ 0/1:59,0,220:62 chr2 203682304 . C G 54 . DP=7;VDB=0.0022;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=35;PV4=1,1,1,1 GT:PL:GQ 0/1:84,0,62:65 chr2 203686234 . GTTTCCTTTC GTTTC 162 . INDEL;DP=19;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,8,0,9;MQ=53;FQ=165;PV4=1,0.022,0.0048,1 GT:PL:GQ 0/1:200,0,240:99 chr2 203690387 . G A 5.29 . DP=4;VDB=0.0309;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:35,6,0:6 chr2 203693559 . C G 222 . DP=140;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,95,38;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 203747340 . T C 103 . DP=22;VDB=0.0373;AF1=0.5;AC1=1;DP4=6,4,7,3;MQ=59;FQ=106;PV4=1,1.5e-07,0.17,0.094 GT:PL:GQ 0/1:133,0,212:99 chr2 203747522 . A G 206 . DP=17;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,4,2,11;MQ=60;FQ=46;PV4=1,1,1,1 GT:PL:GQ 0/1:236,0,73:76 chr2 203748544 . Atttttttttt ATTtttttttttt,ATtttttttttt 71.5 . INDEL;DP=31;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,15;MQ=60;FQ=-70.5 GT:PL:GQ 1/1:112,36,0,117,3,102:69 chr2 203748594 . A G 43.3 . DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:76,15,0:27 chr2 203765756 . T C 4.13 . DP=7;VDB=0.0173;AF1=0.4998;AC1=1;DP4=5,0,2,0;MQ=60;FQ=6.2;PV4=1,0.059,1,1 GT:PL:GQ 0/1:32,0,113:31 chr2 203806724 . C T 29 . DP=140;VDB=0.0399;AF1=0.5;AC1=1;DP4=29,41,16,21;MQ=60;FQ=32;PV4=1,4.4e-54,1,0.031 GT:PL:GQ 0/1:59,0,255:62 chr2 203836507 . G C 88 . DP=17;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,8,0,6;MQ=60;FQ=91;PV4=1,0.12,1,1 GT:PL:GQ 0/1:118,0,151:99 chr2 203846817 . A T 172 . DP=147;VDB=0.0345;AF1=0.5;AC1=1;DP4=57,14,51,21;MQ=60;FQ=175;PV4=0.24,2.2e-39,0.29,1 GT:PL:GQ 0/1:202,0,255:99 chr2 203848402 . G A 34 . DP=18;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,7,4,7;MQ=60;FQ=37;PV4=0.12,1.4e-09,1,1 GT:PL:GQ 0/1:64,0,123:67 chr2 203880992 . T C 3.01 . DP=8;VDB=0.0322;AF1=0.4997;AC1=1;DP4=4,0,3,1;MQ=60;FQ=4.77;PV4=1,1.2e-07,1,0.36 GT:PL:GQ 0/1:30,0,101:28 chr2 203921270 . A G 204 . DP=32;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,8,23;MQ=60;FQ=-120 GT:PL:GQ 1/1:237,93,0:99 chr2 203990789 . T G 119 . DP=74;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,16,16,25;MQ=60;FQ=122;PV4=0.48,2.1e-35,1,0.039 GT:PL:GQ 0/1:149,0,255:99 chr2 203991488 . A G 225 . DP=46;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,11,12,11;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 203995078 . G A 225 . DP=83;VDB=0.0345;AF1=0.5;AC1=1;DP4=23,13,26,18;MQ=59;FQ=225;PV4=0.82,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 203996635 . T G 16.1 . DP=9;VDB=0.0180;AF1=0.5;AC1=1;DP4=5,0,4,0;MQ=57;FQ=19.1;PV4=1,5.2e-06,0.15,1 GT:PL:GQ 0/1:46,0,115:49 chr2 203996870 . A G 137 . DP=51;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,48;MQ=60;FQ=-178 GT:PL:GQ 1/1:170,151,0:99 chr2 204002809 . A C 115 . DP=6;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:148,18,0:33 chr2 204062061 . A G 222 . DP=119;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,64,51;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 204090887 . C G 220 . DP=59;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,34,19;MQ=60;FQ=-187 GT:PL:GQ 1/1:253,160,0:99 chr2 204111394 . T C 82.1 . DP=7;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,7,0;MQ=29;FQ=-48 GT:PL:GQ 1/1:115,21,0:39 chr2 204111398 . GTTAATT GTT 78.5 . INDEL;DP=7;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,7,0;MQ=29;FQ=-55.5 GT:PL:GQ 1/1:119,21,0:39 chr2 204111443 . A G 127 . DP=39;VDB=0.0164;AF1=1;AC1=2;DP4=1,0,31,5;MQ=53;FQ=-109;PV4=1,2.8e-06,1,1 GT:PL:GQ 1/1:160,82,0:99 chr2 204111705 . T C 116 . DP=27;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,25;MQ=60;FQ=-105 GT:PL:GQ 1/1:149,78,0:99 chr2 204116690 . C T 222 . DP=44;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,38,3;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr2 204116887 . T G 81 . DP=39;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,31;MQ=59;FQ=-126 GT:PL:GQ 1/1:114,99,0:99 chr2 204154686 . A G 13 . DP=2;VDB=0.0176;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr2 204206977 . C T 207 . DP=29;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,16,13;MQ=60;FQ=-114 GT:PL:GQ 1/1:240,87,0:99 chr2 204240891 . TC T 152 . INDEL;DP=20;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,8,4,5;MQ=60;FQ=155;PV4=0.64,0.27,1,1 GT:PL:GQ 0/1:190,0,242:99 chr2 204261723 . G C 222 . DP=112;VDB=0.0322;AF1=1;AC1=2;DP4=0,1,31,78;MQ=59;FQ=-282;PV4=1,3.3e-06,1,0.24 GT:PL:GQ 1/1:255,255,0:99 chr2 204594512 . T C 164 . DP=82;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,31,13,24;MQ=59;FQ=167;PV4=0.63,1.3e-29,0.029,1 GT:PL:GQ 0/1:194,0,255:99 chr2 204732714 . A G 224 . DP=37;VDB=0.0373;AF1=0.5;AC1=1;DP4=14,3,15,5;MQ=60;FQ=204;PV4=0.7,0.054,1,0.15 GT:PL:GQ 0/1:254,0,231:99 chr2 204732850 . A G 110 . DP=46;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,10,22;MQ=60;FQ=-123 GT:PL:GQ 1/1:143,96,0:99 chr2 204824178 . agtgtgtgtgtgtgtgtgtgtgtg agtgtgtgtgtgtgtgtgtgtg 111 . INDEL;DP=17;VDB=0.0025;AF1=0.5;AC1=1;DP4=9,0,6,1;MQ=57;FQ=114;PV4=0.44,0.13,0.43,1 GT:PL:GQ 0/1:149,0,219:99 chr2 204824283 . T G 225 . DP=102;VDB=0.0365;AF1=0.5;AC1=1;DP4=31,16,36,17;MQ=60;FQ=225;PV4=1,0.12,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 205829991 . C T 222 . DP=45;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,24,18;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr2 205912210 . C A 31 . DP=3;VDB=0.0217;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:63,9,0:16 chr2 205912403 . T C 155 . DP=12;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,4,8;MQ=60;FQ=-63 GT:PL:GQ 1/1:188,36,0:69 chr2 205969023 . A C 75 . DP=19;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,17,2;MQ=60;FQ=-84 GT:PL:GQ 1/1:108,57,0:99 chr2 205969220 . G A 144 . DP=106;VDB=0.0298;AF1=1;AC1=2;DP4=0,1,19,84;MQ=60;FQ=-282;PV4=1,9.5e-07,0.44,0.29 GT:PL:GQ 1/1:177,255,0:99 chr2 205978118 . gtgt g 41.2 . INDEL;DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:80,6,0:10 chr2 205986321 . A G 140 . DP=50;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,40,8;MQ=60;FQ=-171 GT:PL:GQ 1/1:173,144,0:99 chr2 206050355 . A G 222 . DP=23;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,19,3;MQ=59;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr2 206305302 . C T 144 . DP=64;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,22,9,23;MQ=60;FQ=147;PV4=1,1.3e-20,1,0.39 GT:PL:GQ 0/1:174,0,255:99 chr2 206364737 . T C 202 . DP=32;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,8,19;MQ=59;FQ=-108 GT:PL:GQ 1/1:235,81,0:99 chr2 206417900 . T G 128 . DP=8;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:161,24,0:45 chr2 206418032 . G A 222 . DP=52;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,25;MQ=59;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr2 206481612 . Tgagagagagagagagagagag Tgagagagagagagagagag 166 . INDEL;DP=11;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,11,0;MQ=58;FQ=-67.5 GT:PL:GQ 1/1:207,33,0:63 chr2 206562250 . C T 122 . DP=13;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:155,36,0:69 chr2 206581033 . G A 166 . DP=40;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,6,32;MQ=59;FQ=-141 GT:PL:GQ 1/1:199,114,0:99 chr2 206587148 . G A 33 . DP=12;VDB=0.0019;AF1=0.5;AC1=1;DP4=4,0,5,2;MQ=58;FQ=36;PV4=0.49,4.4e-06,1,0.14 GT:PL:GQ 0/1:63,0,85:66 chr2 206592695 . T C 222 . DP=67;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,35;MQ=59;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr2 206605180 . T G 93 . DP=50;VDB=0.0190;AF1=0.5;AC1=1;DP4=23,5,18,3;MQ=60;FQ=96;PV4=1,3.7e-15,0.13,1 GT:PL:GQ 0/1:123,0,255:99 chr2 206608039 . T C 222 . DP=56;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,34;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr2 206614646 . T G 8.44 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr2 206630073 . Aacacacacacacacacaca AACacacacacacacacacaca 215 . INDEL;DP=27;VDB=0.0140;AF1=1;AC1=2;DP4=2,0,24,1;MQ=58;FQ=-45.5;PV4=1,1,1,1 GT:PL:GQ 1/1:255,11,0:19 chr2 206874339 . G A 161 . DP=17;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,5;MQ=59;FQ=-78 GT:PL:GQ 1/1:194,51,0:99 chr2 206911191 . caaaaaaaaaa cAaaaaaaaaaa 4.45 . INDEL;DP=9;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-55.5 GT:PL:GQ 1/1:43,21,0:20 chr2 206911228 . G A 222 . DP=16;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,4;MQ=59;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr2 206921451 . G A 222 . DP=62;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,39,23;MQ=59;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr2 206995010 . A G 39 . DP=17;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,10,0,7;MQ=59;FQ=42;PV4=1,1.6e-07,0.12,1 GT:PL:GQ 0/1:69,0,157:72 chr2 207006676 . T C 73 . DP=39;VDB=0.0216;AF1=0.5;AC1=1;DP4=15,2,18,3;MQ=59;FQ=76;PV4=1,2.4e-14,0.19,1 GT:PL:GQ 0/1:103,0,218:99 chr2 207006825 . C A 33 . DP=12;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,6,0,6;MQ=60;FQ=36;PV4=1,1.9e-05,1,0.4 GT:PL:GQ 0/1:63,0,126:66 chr2 207008763 . C A 225 . DP=123;VDB=0.0380;AF1=0.5;AC1=1;DP4=35,20,40,23;MQ=60;FQ=225;PV4=1,7.6e-06,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 207023620 . A G 9.49 . DP=3;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:41,9,0:12 chr2 207025444 . T C 154 . DP=169;VDB=0.0400;AF1=0.5;AC1=1;DP4=63,31,40,34;MQ=60;FQ=157;PV4=0.11,4.1e-60,1,0.27 GT:PL:GQ 0/1:184,0,255:99 chr2 207027407 . C CT 217 . INDEL;DP=26;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,7,6,7;MQ=57;FQ=202;PV4=1,1,0.47,0.44 GT:PL:GQ 0/1:255,0,237:99 chr2 207041053 . T C 183 . DP=92;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,14,27,28;MQ=60;FQ=186;PV4=0.29,2.2e-30,0.21,0.17 GT:PL:GQ 0/1:213,0,255:99 chr2 207041441 . G A 225 . DP=104;VDB=0.0400;AF1=0.5;AC1=1;DP4=27,35,18,22;MQ=60;FQ=225;PV4=1,0.15,1,0.22 GT:PL:GQ 0/1:255,0,255:99 chr2 207041933 . T C 8.64 . DP=19;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,11,0,7;MQ=60;FQ=11.3;PV4=1,1.9e-11,1,0.27 GT:PL:GQ 0/1:38,0,168:40 chr2 207169731 . G A 153 . DP=68;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,31,31;MQ=59;FQ=-214 GT:PL:GQ 1/1:186,187,0:99 chr2 207172627 . A G 222 . DP=59;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,25,34;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr2 207174316 . T C 222 . DP=70;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,37,30;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr2 207413170 . T G 49 . DP=34;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,14,1,16;MQ=59;FQ=52;PV4=0.6,1.9e-11,0.16,0.47 GT:PL:GQ 0/1:79,0,238:82 chr2 207427101 . A T 58 . DP=58;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,34,2,17;MQ=60;FQ=61;PV4=1,2.1e-27,1,1 GT:PL:GQ 0/1:88,0,255:91 chr2 207452151 . GTTTTTTTTT GTTTTTTTT 9.15 . INDEL;DP=8;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:49,18,0:23 chr2 207457265 . T C 148 . DP=28;VDB=0.0011;AF1=0.5;AC1=1;DP4=11,0,16,0;MQ=60;FQ=125;PV4=1,1,1,0.1 GT:PL:GQ 0/1:178,0,152:99 chr2 207459467 . C T 101 . DP=59;VDB=0.0322;AF1=0.5;AC1=1;DP4=28,6,19,5;MQ=60;FQ=104;PV4=1,1.8e-25,0.12,1 GT:PL:GQ 0/1:131,0,255:99 chr2 207472683 . CT CTAT 214 . INDEL;DP=12;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,7,5;MQ=60;FQ=-70.5 GT:PL:GQ 1/1:255,36,0:69 chr2 207516721 . A G 84.5 . DP=5;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:117,12,0:21 chr2 207527608 . T C 225 . DP=111;VDB=0.0322;AF1=0.5;AC1=1;DP4=36,16,43,14;MQ=60;FQ=225;PV4=0.52,0.23,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 207527840 . G T 193 . DP=83;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,39,38;MQ=59;FQ=-259 GT:PL:GQ 1/1:226,232,0:99 chr2 207530855 . G C 60 . DP=8;VDB=0.0008;AF1=0.5025;AC1=1;DP4=0,1,1,5;MQ=60;FQ=-7.78;PV4=1,0.0016,1,0.12 GT:PL:GQ 0/1:90,0,20:23 chr2 207569715 . T C 90 . DP=67;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,37,3,22;MQ=59;FQ=93;PV4=0.37,3.8e-26,0.037,1 GT:PL:GQ 0/1:120,0,250:99 chr2 207570529 . G C 55 . DP=28;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,4,8,2;MQ=60;FQ=58;PV4=1,1.1e-08,1,1 GT:PL:GQ 0/1:85,0,255:88 chr2 207570705 . A G 179 . DP=22;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,7,1,12;MQ=60;FQ=146;PV4=0.54,1,1,1 GT:PL:GQ 0/1:209,0,173:99 chr2 207572133 . A C 225 . DP=71;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,16,18,13;MQ=60;FQ=225;PV4=1,0.36,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 207621759 . A G 209 . DP=61;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,13,47;MQ=59;FQ=-208 GT:PL:GQ 1/1:242,181,0:99 chr2 207820276 . G A 222 . DP=78;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,24,51;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr2 207824384 . T G 198 . DP=38;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,28,9;MQ=60;FQ=-138 GT:PL:GQ 1/1:231,111,0:99 chr2 207824548 . G A 171 . DP=33;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,24;MQ=60;FQ=-114 GT:PL:GQ 1/1:204,87,0:99 chr2 207825656 . A T 222 . DP=98;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,19,74;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 207833760 . A T 14.9 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:46,6,0:10 chr2 207833848 . A G 222 . DP=33;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,26,5;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr2 207833983 . A G 225 . DP=53;VDB=0.0398;AF1=0.5;AC1=1;DP4=16,8,19,7;MQ=59;FQ=225;PV4=0.76,0.41,1,0.24 GT:PL:GQ 0/1:255,0,255:99 chr2 207974818 . C T 225 . DP=100;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,45,12,28;MQ=60;FQ=225;PV4=0.35,0.089,0.045,0.35 GT:PL:GQ 0/1:255,0,255:99 chr2 207974875 . A G 212 . DP=45;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,22,3,17;MQ=60;FQ=215;PV4=1,0.42,1,1 GT:PL:GQ 0/1:242,0,255:99 chr2 207988613 . C T 36.1 . DP=7;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:69,21,0:39 chr2 207998800 . C T 222 . DP=74;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,33,40;MQ=57;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr2 207998878 . Attttttttttttttttttttt ATTTttttttttttttttttttttt,ATTTTttttttttttttttttttttt,ATTttttttttttttttttttttt 34.5 . INDEL;DP=47;VDB=0.0263;AF1=1;AC1=2;DP4=0,0,7,10;MQ=60;FQ=-67.5 GT:PL:GQ 1/1:98,56,23,73,0,61,101,41,65,95:61 chr2 207999021 . G C 37.8 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:69,6,0:10 chr2 208031796 . C G 116 . DP=25;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,23,1;MQ=60;FQ=-99 GT:PL:GQ 1/1:149,72,0:99 chr2 208031992 . T A 222 . DP=46;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,10,34;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr2 208134114 . A T 29 . DP=19;VDB=0.0359;AF1=0.5;AC1=1;DP4=6,6,3,3;MQ=60;FQ=32;PV4=1,7.9e-08,1,1 GT:PL:GQ 0/1:59,0,255:62 chr2 208477852 . G A 222 . DP=157;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,86,68;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 208477956 . C T 201 . DP=102;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,31,69;MQ=59;FQ=-282 GT:PL:GQ 1/1:234,255,0:99 chr2 208633413 . T C 161 . DP=19;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,15;MQ=60;FQ=-81 GT:PL:GQ 1/1:194,54,0:99 chr2 208811097 . C T 141 . DP=47;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,32,11;MQ=60;FQ=-156 GT:PL:GQ 1/1:174,129,0:99 chr2 208811284 . C T 222 . DP=65;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,21,40;MQ=60;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr2 208986637 . T C 120 . DP=63;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,21,12,16;MQ=60;FQ=123;PV4=0.41,4.1e-20,1,1 GT:PL:GQ 0/1:150,0,255:99 chr2 208989037 . A G 222 . DP=14;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,5,8;MQ=47;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr2 209007559 . T G 175 . DP=25;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,9,2,10;MQ=60;FQ=178;PV4=1,0.063,1,0.45 GT:PL:GQ 0/1:205,0,233:99 chr2 209010558 . A G 29 . DP=19;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,1,4,2;MQ=60;FQ=32;PV4=0.25,1.1e-08,1,1 GT:PL:GQ 0/1:59,0,194:62 chr2 209010891 . G A 73 . DP=41;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,15,3,19;MQ=60;FQ=76;PV4=1,1.7e-21,1,1 GT:PL:GQ 0/1:103,0,253:99 chr2 209030572 . A G 222 . DP=26;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,23;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr2 209033138 . C T 51.3 . DP=5;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,4;MQ=59;FQ=-42 GT:PL:GQ 1/1:84,15,0:27 chr2 209033173 . A G 38.5 . DP=5;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:71,12,0:21 chr2 209035485 . T G 71 . DP=9;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:104,24,0:45 chr2 209035658 . C T 210 . DP=148;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,72,72;MQ=60;FQ=-282 GT:PL:GQ 1/1:243,255,0:99 chr2 209035849 . A C 85 . DP=18;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:118,45,0:87 chr2 209036605 . T C 222 . DP=32;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,25,4;MQ=60;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr2 209036712 . T C 211 . DP=63;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,33,28;MQ=60;FQ=-211 GT:PL:GQ 1/1:244,184,0:99 chr2 209036778 . A G 222 . DP=52;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,11,40;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr2 209049840 . C T 162 . DP=43;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,7,28;MQ=60;FQ=-132 GT:PL:GQ 1/1:195,105,0:99 chr2 209101905 . GAAAAAAAAAA GAAAAAAAAA 54.5 . INDEL;DP=29;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,11,15;MQ=60;FQ=-113 GT:PL:GQ 1/1:95,78,0:99 chr2 209138946 . C T 64.1 . DP=6;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:97,18,0:33 chr2 209163556 . C T 194 . DP=89;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,7,82;MQ=59;FQ=-282 GT:PL:GQ 1/1:227,255,0:99 chr2 209168853 . C T 222 . DP=64;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,47,16;MQ=60;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr2 209184980 . G A 142 . DP=17;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,2;MQ=59;FQ=-78 GT:PL:GQ 1/1:175,51,0:99 chr2 209184999 . C T 146 . DP=21;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,15,6;MQ=59;FQ=-90 GT:PL:GQ 1/1:179,63,0:99 chr2 209189912 . A G 55 . DP=3;VDB=0.0098;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:87,9,0:16 chr2 209190330 . T C 209 . DP=64;VDB=0.0271;AF1=1;AC1=2;DP4=1,0,26,36;MQ=60;FQ=-177;PV4=0.43,5e-07,0.45,0.31 GT:PL:GQ 1/1:242,150,0:99 chr2 209190519 . A T 222 . DP=59;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,31,27;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr2 209190528 . C G 222 . DP=66;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,29,32;MQ=60;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr2 209191082 . C A 149 . DP=82;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,34,44;MQ=59;FQ=-262 GT:PL:GQ 1/1:182,235,0:99 chr2 209191099 . T C 222 . DP=75;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,30,43;MQ=59;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr2 209194696 . G C 199 . DP=24;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,14;MQ=60;FQ=-99 GT:PL:GQ 1/1:232,72,0:99 chr2 209195099 . G A 17.8 . DP=2;VDB=0.0176;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:49,6,0:10 chr2 209195133 . T C 68 . DP=11;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:101,33,0:63 chr2 209199945 . A G 69 . DP=22;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,22,0;MQ=60;FQ=-93 GT:PL:GQ 1/1:102,66,0:99 chr2 209201739 . T C 42.8 . DP=3;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:74,6,0:10 chr2 209204714 . G A 40 . DP=25;VDB=0.0033;AF1=0.5;AC1=1;DP4=9,3,10,1;MQ=60;FQ=43;PV4=0.59,2.5e-12,1,0.31 GT:PL:GQ 0/1:70,0,230:73 chr2 209209827 . G A 222 . DP=63;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,46,13;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr2 209209997 . C T 141 . DP=9;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:174,24,0:45 chr2 209212707 . G A 206 . DP=35;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,20,15;MQ=60;FQ=-132 GT:PL:GQ 1/1:239,105,0:99 chr2 209214770 . A G 222 . DP=76;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,36,36;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr2 209215448 . A G 106 . DP=10;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:139,18,0:33 chr2 209215586 . A G 158 . DP=22;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,12;MQ=60;FQ=-93 GT:PL:GQ 1/1:191,66,0:99 chr2 209219190 . A G 35 . DP=8;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,8,0;MQ=57;FQ=-51 GT:PL:GQ 1/1:68,24,0:45 chr2 209220157 . G T 62.1 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:95,18,0:33 chr2 209224874 . CAA CA 214 . INDEL;DP=17;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,14,3;MQ=60;FQ=-85.5 GT:PL:GQ 1/1:255,51,0:99 chr2 209293168 . C T 75.5 . DP=5;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:108,12,0:21 chr2 209315573 . G A 222 . DP=43;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,18,24;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr2 209358027 . C T 100 . DP=38;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,16,5,9;MQ=59;FQ=103;PV4=0.47,1.1e-12,0.11,1 GT:PL:GQ 0/1:130,0,255:99 chr2 210517785 . C T 184 . DP=23;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,23,0;MQ=60;FQ=-96 GT:PL:GQ 1/1:217,69,0:99 chr2 210594540 . A G 222 . DP=93;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,51,39;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 210594717 . CTTTTT CTTTTTT 81.5 . INDEL;DP=28;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,17;MQ=60;FQ=-88.5 GT:PL:GQ 1/1:122,54,0:99 chr2 210678691 . T G 94 . DP=30;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,26;MQ=60;FQ=-108 GT:PL:GQ 1/1:127,81,0:99 chr2 210682485 . A G 95 . DP=19;VDB=0.0359;AF1=0.5;AC1=1;DP4=6,2,9,2;MQ=60;FQ=98;PV4=1,1.7e-06,1,0.21 GT:PL:GQ 0/1:125,0,180:99 chr2 210745681 . C A 222 . DP=116;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,68,43;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 210786137 . G A 214 . DP=17;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,16,1;MQ=59;FQ=-78 GT:PL:GQ 1/1:247,51,0:99 chr2 210843383 . G A 222 . DP=54;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,14,40;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr2 210846867 . A G 222 . DP=34;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,21,11;MQ=59;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr2 210849735 . C T 35 . DP=22;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,10,1,8;MQ=60;FQ=38;PV4=0.62,3.4e-09,1,1 GT:PL:GQ 0/1:65,0,236:68 chr2 210882171 . A T 10.2 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:41,6,0:8 chr2 210882456 . G T 58.3 . DP=5;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,5;MQ=55;FQ=-42 GT:PL:GQ 1/1:91,15,0:27 chr2 210882677 . C T 8.44 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr2 211069438 . G A 188 . DP=56;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,50;MQ=60;FQ=-196 GT:PL:GQ 1/1:221,169,0:99 chr2 211163054 . cacacatactacaca cacaca 3.8 . INDEL;DP=6;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=50;FQ=5.8;PV4=1,1,0,0.032 GT:PL:GQ 0/1:39,0,71:38 chr2 211163091 . cTGCT c 106 . INDEL;DP=24;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,5,6,0;MQ=53;FQ=109;PV4=0.26,1,0.059,1 GT:PL:GQ 0/1:144,0,255:99 chr2 211167132 . A T 200 . DP=116;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,63,47;MQ=60;FQ=-282 GT:PL:GQ 1/1:233,255,0:99 chr2 211168181 . T TC 60.5 . INDEL;DP=9;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-61.5 GT:PL:GQ 1/1:101,27,0:51 chr2 211168346 . A C 222 . DP=27;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,13;MQ=59;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr2 211319824 . T C 222 . DP=41;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,24,16;MQ=60;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr2 211320041 . GAAAAAAAAAAAA GAAAAAAAAAAAAAA,GAAAAAAAAAAAAA 22.7 . INDEL;DP=10;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:63,15,0,64,8,61:26 chr2 211341156 . C G 132 . DP=9;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:165,24,0:45 chr2 211342502 . G A 131 . DP=36;VDB=0.0398;AF1=1;AC1=2;DP4=1,1,7,25;MQ=59;FQ=-63;PV4=0.42,3.6e-06,0.4,1 GT:PL:GQ 1/1:164,36,0:69 chr2 211442306 . C T 127 . DP=55;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,23,7,16;MQ=60;FQ=130;PV4=0.75,4.6e-16,1,1 GT:PL:GQ 0/1:157,0,255:99 chr2 211456637 . A G 151 . DP=79;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,11,18,15;MQ=60;FQ=154;PV4=0.22,1.9e-12,0.15,0.057 GT:PL:GQ 0/1:181,0,255:99 chr2 211456639 . C T 98 . DP=80;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,20,18,15;MQ=60;FQ=101;PV4=1,2.2e-30,0.12,0.05 GT:PL:GQ 0/1:128,0,255:99 chr2 211481257 . C G 86 . DP=164;VDB=0.0365;AF1=0.5;AC1=1;DP4=34,49,38,37;MQ=60;FQ=89;PV4=0.26,5.1e-65,1,1 GT:PL:GQ 0/1:116,0,255:99 chr2 211513118 . C T 78 . DP=8;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,8,0;MQ=57;FQ=-51 GT:PL:GQ 1/1:111,24,0:45 chr2 211514995 . G T 33 . DP=40;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,5,18,1;MQ=59;FQ=36;PV4=0.18,1.2e-26,1,1 GT:PL:GQ 0/1:63,0,255:66 chr2 211515058 . A T 225 . DP=71;VDB=0.0400;AF1=0.5;AC1=1;DP4=18,13,22,12;MQ=60;FQ=225;PV4=0.62,1,1,0.28 GT:PL:GQ 0/1:255,0,255:99 chr2 211523457 . C T 225 . DP=85;VDB=0.0384;AF1=0.5;AC1=1;DP4=10,39,8,24;MQ=60;FQ=225;PV4=0.79,0.23,1,0.24 GT:PL:GQ 0/1:255,0,255:99 chr2 211527827 . GTTTTTTTTTTTT GTTTTTTTTTTT,GTTTTTTTTTT 13.6 . INDEL;DP=54;VDB=0.0322;AF1=1;AC1=2;DP4=1,1,27,20;MQ=60;FQ=-143;PV4=1,0.49,1,1 GT:PL:GQ 1/1:54,108,0,48,89,43:81 chr2 211533070 . A G 178 . DP=30;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,9,19;MQ=60;FQ=-111 GT:PL:GQ 1/1:211,84,0:99 chr2 211540507 . C A 98 . DP=80;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,22,15,23;MQ=60;FQ=101;PV4=1,2.7e-28,1,1 GT:PL:GQ 0/1:128,0,255:99 chr2 212251864 . T C 92 . DP=24;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,13,0,8;MQ=60;FQ=95;PV4=0.53,0.052,1,1 GT:PL:GQ 0/1:122,0,236:99 chr2 212252809 . G A 70 . DP=47;VDB=0.0099;AF1=0.5;AC1=1;DP4=4,20,1,19;MQ=59;FQ=73;PV4=0.36,1.6e-15,0.14,1 GT:PL:GQ 0/1:100,0,255:99 chr2 212488870 . G GC 67.5 . INDEL;DP=9;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-61.5 GT:PL:GQ 1/1:108,27,0:51 chr2 212543924 . A G 140 . DP=20;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,7,12;MQ=58;FQ=-84 GT:PL:GQ 1/1:173,57,0:99 chr2 212569924 . G A 80 . DP=7;VDB=0.0287;AF1=0.5;AC1=1;DP4=3,0,3,1;MQ=60;FQ=36;PV4=1,1,1,0.22 GT:PL:GQ 0/1:110,0,63:66 chr2 212569983 . G A 128 . DP=13;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,0,6,1;MQ=58;FQ=54;PV4=1,1,1,0.48 GT:PL:GQ 0/1:158,0,81:84 chr2 212587321 . G A 222 . DP=24;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,2,21;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr2 212615516 . T C 102 . DP=43;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,14,3,19;MQ=58;FQ=105;PV4=0.68,1.4e-19,0.054,0.16 GT:PL:GQ 0/1:132,0,255:99 chr2 213291199 . A G 137 . DP=10;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,1,2,6;MQ=55;FQ=17.1;PV4=1,0.34,0.24,1 GT:PL:GQ 0/1:167,0,44:47 chr2 213886454 . A T 156 . DP=31;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,16,13;MQ=60;FQ=-114 GT:PL:GQ 1/1:189,87,0:99 chr2 213886647 . ATTTTATCTT ATTTTATCTTTTTATCTT 99.5 . INDEL;DP=11;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,11,0;MQ=33;FQ=-67.5 GT:PL:GQ 1/1:140,33,0:63 chr2 213914343 . C T 82 . DP=10;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:115,30,0:57 chr2 214012405 . A C 140 . DP=113;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,48,28;MQ=60;FQ=-256 GT:PL:GQ 1/1:173,229,0:99 chr2 214142631 . G C 222 . DP=23;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,8,13;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr2 214228792 . C T 11.3 . DP=3;VDB=0.0098;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:43,9,0:13 chr2 214228959 . G A 42.1 . DP=8;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,2,5;MQ=60;FQ=-48 GT:PL:GQ 1/1:75,21,0:39 chr2 214233812 . C A 57 . DP=15;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,13;MQ=60;FQ=-69 GT:PL:GQ 1/1:90,42,0:81 chr2 214261534 . T C 29.5 . DP=6;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:62,12,0:21 chr2 214727150 . T C 205 . DP=19;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,15,1;MQ=60;FQ=-75 GT:PL:GQ 1/1:238,48,0:93 chr2 214727221 . A C 144 . DP=31;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,14,10;MQ=60;FQ=-99 GT:PL:GQ 1/1:177,72,0:99 chr2 214727367 . C G 145 . DP=21;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,6,15;MQ=60;FQ=-90 GT:PL:GQ 1/1:178,63,0:99 chr2 215102929 . T A 193 . DP=41;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,28,11;MQ=59;FQ=-144 GT:PL:GQ 1/1:226,117,0:99 chr2 215595765 . C G 222 . DP=47;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,11,31;MQ=59;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr2 215632256 . A G 222 . DP=65;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,37,22;MQ=59;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr2 215645545 . C G 107 . DP=125;VDB=0.0392;AF1=0.5;AC1=1;DP4=38,30,29,27;MQ=59;FQ=110;PV4=0.72,2.3e-38,0.11,1 GT:PL:GQ 0/1:137,0,255:99 chr2 215674090 . T G 99 . DP=67;VDB=0.0244;AF1=0.5;AC1=1;DP4=22,19,19,6;MQ=60;FQ=102;PV4=0.12,6.3e-09,1,1 GT:PL:GQ 0/1:129,0,255:99 chr2 215833415 . A G 62 . DP=15;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,2,8,1;MQ=60;FQ=65;PV4=0.51,2.1e-11,1,0.19 GT:PL:GQ 0/1:92,0,136:95 chr2 215840414 . C A 6.2 . DP=4;VDB=0.0196;AF1=0.4999;AC1=1;DP4=2,0,2,0;MQ=60;FQ=8.61;PV4=1,0.067,1,1 GT:PL:GQ 0/1:35,0,55:36 chr2 215848034 . T C 13.9 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr2 215851246 . A G 79 . DP=18;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,17,1;MQ=57;FQ=-81 GT:PL:GQ 1/1:112,54,0:99 chr2 215855780 . G A 222 . DP=36;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,3,33;MQ=59;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr2 215862383 . G A 104 . DP=19;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,16,2;MQ=57;FQ=-81 GT:PL:GQ 1/1:137,54,0:99 chr2 215862633 . C G 177 . DP=9;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:210,27,0:51 chr2 215872334 . G A 132 . DP=52;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,41,8;MQ=60;FQ=-175 GT:PL:GQ 1/1:165,148,0:99 chr2 215874965 . G T 117 . DP=7;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:150,18,0:33 chr2 215875251 . A T 222 . DP=15;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,2,13;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr2 215876166 . A T 106 . DP=27;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,24,0;MQ=60;FQ=-99 GT:PL:GQ 1/1:139,72,0:99 chr2 215878240 . G A 71 . DP=16;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,13,1;MQ=60;FQ=-69 GT:PL:GQ 1/1:104,42,0:81 chr2 215878246 . C T 100 . DP=18;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,15,1;MQ=60;FQ=-75 GT:PL:GQ 1/1:133,48,0:93 chr2 215890352 . gttttttttttt gttttttttt 13.2 . INDEL;DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,4,0;MQ=47;FQ=-46.5 GT:PL:GQ 1/1:53,12,0:19 chr2 215928677 . G C 48 . DP=17;VDB=0.0003;AF1=0.5;AC1=1;DP4=12,0,4,0;MQ=60;FQ=51;PV4=1,1,1,0.14 GT:PL:GQ 0/1:78,0,173:81 chr2 215928972 . G C 92 . DP=7;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,2,0,5;MQ=60;FQ=28;PV4=1,0.083,1,0.18 GT:PL:GQ 0/1:122,0,55:58 chr2 215940242 . T C 222 . DP=74;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,50,21;MQ=60;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr2 216176807 . T G 75 . DP=7;VDB=0.0325;AF1=0.5025;AC1=1;DP4=1,0,2,4;MQ=60;FQ=-7.78;PV4=0.43,0.0054,1,0.14 GT:PL:GQ 0/1:105,0,20:23 chr2 216182769 . A T 110 . DP=12;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:143,15,0:27 chr2 216184482 . A G 225 . DP=61;VDB=0.0393;AF1=0.5;AC1=1;DP4=14,6,20,17;MQ=59;FQ=225;PV4=0.27,0.022,0.47,0.45 GT:PL:GQ 0/1:255,0,255:99 chr2 216189845 . A G 84 . DP=8;VDB=0.0011;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=14.2;PV4=1,1,1,1 GT:PL:GQ 0/1:114,0,41:44 chr2 216190020 . C G 225 . DP=54;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,23,6,17;MQ=59;FQ=225;PV4=1,1,1,0.31 GT:PL:GQ 0/1:255,0,255:99 chr2 216190691 . A C 222 . DP=44;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,28,16;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr2 216191533 . C T 113 . DP=16;VDB=0.0033;AF1=0.5;AC1=1;DP4=8,1,6,1;MQ=60;FQ=116;PV4=1,0.11,1,0.14 GT:PL:GQ 0/1:143,0,181:99 chr2 216199525 . T C 43.8 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:75,6,0:10 chr2 216199551 . T A 11.3 . DP=6;VDB=0.0236;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=13.8;PV4=1,1.8e-06,1,0.41 GT:PL:GQ 0/1:41,0,51:43 chr2 216200907 . C G 157 . DP=44;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,7,35;MQ=60;FQ=-153 GT:PL:GQ 1/1:190,126,0:99 chr2 216209472 . A G 225 . DP=43;VDB=0.0190;AF1=0.5;AC1=1;DP4=13,8,17,5;MQ=60;FQ=225;PV4=0.33,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 216211712 . A T 222 . DP=70;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,51;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr2 216212279 . G C 174 . DP=72;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,51,20;MQ=60;FQ=-241 GT:PL:GQ 1/1:207,214,0:99 chr2 216212339 . T C 162 . DP=105;VDB=0.0345;AF1=0.5;AC1=1;DP4=25,29,17,33;MQ=60;FQ=165;PV4=0.23,4.7e-37,1,1 GT:PL:GQ 0/1:192,0,255:99 chr2 216214492 . T G 100 . DP=10;VDB=0.0006;AF1=0.5;AC1=1;DP4=0,3,0,7;MQ=60;FQ=44;PV4=1,0.22,1,0.032 GT:PL:GQ 0/1:130,0,71:74 chr2 216229692 . A G 225 . DP=72;VDB=0.0298;AF1=0.5;AC1=1;DP4=29,11,19,11;MQ=59;FQ=225;PV4=0.45,1,0.42,0.37 GT:PL:GQ 0/1:255,0,255:99 chr2 216235089 . C T 222 . DP=60;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,22,30;MQ=59;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr2 216243832 . T C 225 . DP=80;VDB=0.0345;AF1=0.5;AC1=1;DP4=29,8,32,10;MQ=60;FQ=225;PV4=1,1,0.18,0.091 GT:PL:GQ 0/1:255,0,255:99 chr2 216249587 . C T 38 . DP=21;VDB=0.0384;AF1=0.5;AC1=1;DP4=10,0,10,0;MQ=60;FQ=41;PV4=1,6.2e-11,1,1 GT:PL:GQ 0/1:68,0,154:71 chr2 216249819 . C T 61 . DP=4;VDB=0.0098;AF1=0.5003;AC1=1;DP4=0,1,0,3;MQ=60;FQ=4.13;PV4=1,0.33,1,0.33 GT:PL:GQ 0/1:91,0,29:32 chr2 216253039 . G C 39 . DP=63;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,30,6,15;MQ=59;FQ=42;PV4=0.76,1.2e-30,0.33,1 GT:PL:GQ 0/1:69,0,255:72 chr2 216256615 . T C 86 . DP=8;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:119,24,0:45 chr2 216262621 . A C 203 . DP=22;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,6,14;MQ=59;FQ=-87 GT:PL:GQ 1/1:236,60,0:99 chr2 216263926 . C A 109 . DP=26;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,20,5;MQ=60;FQ=-102 GT:PL:GQ 1/1:142,75,0:99 chr2 216263938 . CT CTT 214 . INDEL;DP=37;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,26,11;MQ=60;FQ=-146 GT:PL:GQ 1/1:255,111,0:99 chr2 216272819 . C G 109 . DP=22;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,20,1;MQ=59;FQ=-90 GT:PL:GQ 1/1:142,63,0:99 chr2 216272900 . T G 212 . DP=72;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,41,25;MQ=59;FQ=-226 GT:PL:GQ 1/1:245,199,0:99 chr2 216272907 . A T 225 . DP=71;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,18,16,12;MQ=60;FQ=225;PV4=0.8,0.0016,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr2 216274853 . Aacacacacacacacacacacac Aacacacacacacacacacac 217 . INDEL;DP=27;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,6,3,11;MQ=58;FQ=213;PV4=1,0.49,0.16,1 GT:PL:GQ 0/1:255,0,248:99 chr2 216283958 . T A 152 . DP=70;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,16,20,12;MQ=60;FQ=155;PV4=0.63,1e-18,1,0.46 GT:PL:GQ 0/1:182,0,255:99 chr2 216295337 . A G 8.66 . DP=3;VDB=0.0157;AF1=0.502;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-7.03;PV4=1,0.33,1,1 GT:PL:GQ 0/1:38,0,21:25 chr2 216296860 . G A 44 . DP=10;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,3,0,7;MQ=60;FQ=42.9;PV4=1,4.6e-07,1,0.42 GT:PL:GQ 0/1:74,0,72:73 chr2 216298084 . G A 176 . DP=98;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,27,18,29;MQ=60;FQ=179;PV4=0.68,1.1e-25,0.16,1 GT:PL:GQ 0/1:206,0,255:99 chr2 216298230 . C T 46 . DP=21;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,9,2,9;MQ=59;FQ=49;PV4=0.48,1.6e-06,1,0.34 GT:PL:GQ 0/1:76,0,139:79 chr2 216299571 . TTAC TTACTAC 214 . INDEL;DP=46;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,33;MQ=52;FQ=-149 GT:PL:GQ 1/1:255,114,0:99 chr2 216299629 . C G 80 . DP=13;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,12;MQ=54;FQ=-63 GT:PL:GQ 1/1:113,36,0:69 chr2 216300482 . T A 222 . DP=14;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,3,10;MQ=60;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr2 216808152 . C A 225 . DP=38;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,9,8,11;MQ=59;FQ=225;PV4=0.75,0.013,0.16,0.31 GT:PL:GQ 0/1:255,0,255:99 chr2 216810612 . C T 3.01 . DP=4;VDB=0.0099;AF1=0.4998;AC1=1;DP4=0,2,0,2;MQ=60;FQ=4.77;PV4=1,0.0022,1,1 GT:PL:GQ 0/1:30,0,58:28 chr2 216811707 . G T 71 . DP=25;VDB=0.0025;AF1=0.5;AC1=1;DP4=18,1,6,0;MQ=60;FQ=74;PV4=1,1,1,1 GT:PL:GQ 0/1:101,0,218:99 chr2 216861273 . T C 38.5 . DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:71,12,0:21 chr2 216878008 . C G 170 . DP=48;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,34;MQ=60;FQ=-159 GT:PL:GQ 1/1:203,132,0:99 chr2 216903894 . A C 77.6 . DP=14;VDB=0.0014;AF1=1;AC1=2;DP4=1,0,12,1;MQ=60;FQ=-38;PV4=1,0.019,1,1 GT:PL:GQ 1/1:110,11,0:19 chr2 216904019 . A T 63 . DP=49;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,9,7,10;MQ=59;FQ=66;PV4=0.51,2.9e-20,0.14,1 GT:PL:GQ 0/1:93,0,255:96 chr2 216908679 . C T 132 . DP=30;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,8,6,9;MQ=60;FQ=135;PV4=1,1.8e-13,1,0.45 GT:PL:GQ 0/1:162,0,255:99 chr2 216923679 . C T 83 . DP=95;VDB=0.0298;AF1=0.5;AC1=1;DP4=36,17,23,19;MQ=60;FQ=86;PV4=0.21,4.4e-39,1,1 GT:PL:GQ 0/1:113,0,255:99 chr2 217012901 . A G 133 . DP=34;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,5,25;MQ=60;FQ=-117 GT:PL:GQ 1/1:166,90,0:99 chr2 217055171 . A G 123 . DP=29;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,17,0,12;MQ=60;FQ=126;PV4=1,0.06,1,1 GT:PL:GQ 0/1:153,0,183:99 chr2 217069151 . A G 225 . DP=80;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,31,11,29;MQ=60;FQ=225;PV4=0.6,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 217070057 . G A 38 . DP=7;VDB=0.0006;AF1=0.504;AC1=1;DP4=0,1,0,6;MQ=60;FQ=-9.5;PV4=1,1.4e-05,1,1 GT:PL:GQ 0/1:68,0,18:21 chr2 217123958 . T C 17.8 . DP=2;VDB=0.0176;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:49,6,0:10 chr2 217148417 . C A 134 . DP=34;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,1,31;MQ=59;FQ=-123 GT:PL:GQ 1/1:167,96,0:99 chr2 217364452 . C G 137 . DP=19;VDB=0.0042;AF1=0.5;AC1=1;DP4=8,0,11,0;MQ=59;FQ=111;PV4=1,0.49,1,1 GT:PL:GQ 0/1:167,0,138:99 chr2 217364539 . C T 151 . DP=77;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,46,29;MQ=60;FQ=-253 GT:PL:GQ 1/1:184,226,0:99 chr2 217541582 . T C 212 . DP=61;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,25,35;MQ=59;FQ=-208 GT:PL:GQ 1/1:245,181,0:99 chr2 217736131 . G A 160 . DP=17;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,1,9,1;MQ=59;FQ=120;PV4=1,0.32,1,1 GT:PL:GQ 0/1:190,0,147:99 chr2 218577575 . T A 88.5 . DP=5;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:121,12,0:21 chr2 218577813 . acccccCC accccCC 19.5 . INDEL;DP=33;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,10,3,11;MQ=59;FQ=17.8;PV4=1,0.2,0.17,1 GT:PL:GQ 0/1:57,0,54:55 chr2 218604247 . A C 176 . DP=38;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,34,4;MQ=60;FQ=-141 GT:PL:GQ 1/1:209,114,0:99 chr2 218604356 . G A 137 . DP=70;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,20,16,21;MQ=59;FQ=140;PV4=0.62,8.4e-17,1,0.17 GT:PL:GQ 0/1:167,0,255:99 chr2 218694510 . CTTT CTT 214 . INDEL;DP=27;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,6;MQ=60;FQ=-113 GT:PL:GQ 1/1:255,78,0:99 chr2 218694691 . A G 175 . DP=50;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,16,32;MQ=60;FQ=-171 GT:PL:GQ 1/1:208,144,0:99 chr2 218695102 . G A 222 . DP=40;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,19,20;MQ=59;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr2 218706723 . G T 103 . DP=16;VDB=0.0216;AF1=0.5005;AC1=1;DP4=2,0,8,3;MQ=60;FQ=3.02;PV4=1,0.00018,1,1 GT:PL:GQ 0/1:133,0,27:30 chr2 218706857 . T C 166 . DP=64;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,10,12,17;MQ=60;FQ=169;PV4=0.068,1.7e-11,1,1 GT:PL:GQ 0/1:196,0,255:99 chr2 218712306 . C T 117 . DP=42;VDB=0.0384;AF1=0.5;AC1=1;DP4=16,11,7,8;MQ=59;FQ=120;PV4=0.52,2.1e-05,1,0.31 GT:PL:GQ 0/1:147,0,255:99 chr2 218712606 . G A 102 . DP=47;VDB=0.0343;AF1=0.5;AC1=1;DP4=14,13,12,7;MQ=59;FQ=105;PV4=0.55,2.4e-14,1,0.14 GT:PL:GQ 0/1:132,0,255:99 chr2 218712726 . A G 225 . DP=75;VDB=0.0244;AF1=0.5;AC1=1;DP4=27,20,12,15;MQ=60;FQ=225;PV4=0.34,0.44,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 218712918 . C T 225 . DP=65;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,15,25,11;MQ=59;FQ=225;PV4=0.07,0.14,0.11,0.31 GT:PL:GQ 0/1:255,0,255:99 chr2 218712936 . C T 225 . DP=71;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,19,24,14;MQ=59;FQ=225;PV4=0.092,0.13,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 218713282 . G A 188 . DP=85;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,20,22,23;MQ=60;FQ=191;PV4=1,4.8e-19,0.18,0.45 GT:PL:GQ 0/1:218,0,255:99 chr2 218745685 . G A 137 . DP=54;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,28,7,13;MQ=60;FQ=140;PV4=0.19,1.6e-15,1,0.42 GT:PL:GQ 0/1:167,0,255:99 chr2 218758123 . Gcacacacacacacacacacacacacacaca GCACAcacacacacacacacacacacacacacaca 56.5 . INDEL;DP=10;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,1,3,0;MQ=56;FQ=8.19;PV4=1,1,1,1 GT:PL:GQ 0/1:94,0,42:45 chr2 218801767 . C T 185 . DP=67;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,33;MQ=60;FQ=-214 GT:PL:GQ 1/1:218,187,0:99 chr2 218937527 . G A 83 . DP=26;VDB=0.0006;AF1=0.5;AC1=1;DP4=11,8,3,3;MQ=60;FQ=86;PV4=1,0.43,1,1 GT:PL:GQ 0/1:113,0,255:99 chr2 218937860 . G T 88 . DP=11;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,7,2;MQ=60;FQ=-54 GT:PL:GQ 1/1:121,27,0:51 chr2 218940259 . C T 191 . DP=43;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,9,32;MQ=59;FQ=-150 GT:PL:GQ 1/1:224,123,0:99 chr2 219000310 . C T 136 . DP=89;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,18,31,21;MQ=56;FQ=139;PV4=0.39,3.7e-37,3e-05,1 GT:PL:GQ 0/1:166,0,255:99 chr2 219029108 . C G 131 . DP=98;VDB=0.0392;AF1=0.5;AC1=1;DP4=27,35,13,20;MQ=58;FQ=134;PV4=0.83,2.3e-17,0.0022,1 GT:PL:GQ 0/1:161,0,255:99 chr2 219099260 . G C 54 . DP=9;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:87,27,0:51 chr2 219128506 . C T 120 . DP=26;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,24;MQ=60;FQ=-102 GT:PL:GQ 1/1:153,75,0:99 chr2 219138940 . C T 42 . DP=35;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,11,4,10;MQ=60;FQ=45;PV4=0.48,1e-23,1,1 GT:PL:GQ 0/1:72,0,255:75 chr2 219140288 . G C 75 . DP=24;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,3,8,10;MQ=60;FQ=73.3;PV4=1,1.4e-11,1,1 GT:PL:GQ 0/1:105,0,102:99 chr2 219142023 . G A 125 . DP=7;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:158,21,0:39 chr2 219142491 . C T 195 . DP=41;VDB=0.0373;AF1=0.5;AC1=1;DP4=12,11,6,8;MQ=60;FQ=198;PV4=0.74,0.22,1,0.0024 GT:PL:GQ 0/1:225,0,255:99 chr2 219142492 . G A 225 . DP=41;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,9,12,11;MQ=60;FQ=218;PV4=0.52,0.098,1,1 GT:PL:GQ 0/1:255,0,245:99 chr2 219142594 . C T 119 . DP=61;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,9,19,9;MQ=60;FQ=122;PV4=0.78,4.3e-23,1,1 GT:PL:GQ 0/1:149,0,255:99 chr2 219142773 . C T 129 . DP=19;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,7,1,8;MQ=60;FQ=130;PV4=1,0.18,1,1 GT:PL:GQ 0/1:159,0,161:99 chr2 219143229 . G A 150 . DP=92;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,20,28,24;MQ=60;FQ=153;PV4=0.68,6.6e-31,1,1 GT:PL:GQ 0/1:180,0,255:99 chr2 219143327 . T C 122 . DP=66;VDB=0.0298;AF1=0.5;AC1=1;DP4=17,20,3,25;MQ=60;FQ=125;PV4=0.0027,3.9e-11,1,1 GT:PL:GQ 0/1:152,0,255:99 chr2 219144089 . G A 105 . DP=25;VDB=0.0343;AF1=0.5;AC1=1;DP4=4,9,4,7;MQ=60;FQ=108;PV4=1,5.9e-07,1,0.45 GT:PL:GQ 0/1:135,0,245:99 chr2 219144149 . G A 31 . DP=10;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,3,1,4;MQ=60;FQ=34;PV4=1,0.00021,1,0.37 GT:PL:GQ 0/1:61,0,131:64 chr2 219144815 . T C 222 . DP=94;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,51,36;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 219146607 . T C 59 . DP=10;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,2,3,2;MQ=60;FQ=62;PV4=1,0.00027,1,1 GT:PL:GQ 0/1:89,0,108:92 chr2 219146803 . G A 79.1 . DP=8;VDB=0.0345;AF1=0.5064;AC1=1;DP4=1,0,3,3;MQ=60;FQ=-11.3;PV4=1,0.011,1,1 GT:PL:GQ 0/1:109,0,16:19 chr2 219153983 . gaa ga 94.6 . INDEL;DP=6;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:135,18,0:33 chr2 219205471 . G A 129 . DP=100;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,27,26,22;MQ=60;FQ=132;PV4=0.54,5e-29,1,1 GT:PL:GQ 0/1:159,0,255:99 chr2 219206919 . C T 24 . DP=6;VDB=0.0225;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=56;FQ=27;PV4=1,0.0011,1,1 GT:PL:GQ 0/1:54,0,74:57 chr2 219209393 . A G 46.1 . DP=8;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:79,21,0:39 chr2 219227756 . T C 32 . DP=4;VDB=0.0194;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=30.3;PV4=1,1,1,1 GT:PL:GQ 0/1:62,0,59:60 chr2 219231807 . C T 131 . DP=23;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,4,18;MQ=58;FQ=-93 GT:PL:GQ 1/1:164,66,0:99 chr2 219232354 . C A 170 . DP=12;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,2,6;MQ=60;FQ=-51 GT:PL:GQ 1/1:203,24,0:45 chr2 219254622 . A G 222 . DP=78;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,42,33;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr2 219257688 . T C 196 . DP=19;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,7;MQ=59;FQ=-78 GT:PL:GQ 1/1:229,51,0:99 chr2 219265094 . T C 159 . DP=16;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,8,7;MQ=58;FQ=-72 GT:PL:GQ 1/1:192,45,0:87 chr2 219265136 . TC TCC 214 . INDEL;DP=21;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,6,15;MQ=59;FQ=-97.5 GT:PL:GQ 1/1:255,63,0:99 chr2 219265168 . T C 123 . DP=17;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,8,2,6;MQ=59;FQ=119;PV4=0.58,1,1,1 GT:PL:GQ 0/1:153,0,147:99 chr2 219265396 . C T 201 . DP=22;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,0,9,5;MQ=60;FQ=76;PV4=0.26,0.015,1,1 GT:PL:GQ 0/1:231,0,103:99 chr2 219265677 . G C 3.02 . DP=3;VDB=0.0178;AF1=0.5004;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-4.4;PV4=1,0.077,1,1 GT:PL:GQ 0/1:30,0,26:27 chr2 219266204 . T C 48 . DP=32;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,2,16,0;MQ=60;FQ=51;PV4=0.48,2.5e-14,1,1 GT:PL:GQ 0/1:78,0,227:81 chr2 219267781 . C T 225 . DP=51;VDB=0.0244;AF1=0.5;AC1=1;DP4=17,4,21,8;MQ=60;FQ=221;PV4=0.53,0.25,0.2,1 GT:PL:GQ 0/1:255,0,249:99 chr2 219267913 . A G 185 . DP=77;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,25,16,22;MQ=60;FQ=188;PV4=0.64,9.9e-20,1,0.21 GT:PL:GQ 0/1:215,0,255:99 chr2 219288382 . A G 92 . DP=17;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,14,2;MQ=59;FQ=-75 GT:PL:GQ 1/1:125,48,0:93 chr2 219294258 . A C 177 . DP=90;VDB=0.0398;AF1=0.5;AC1=1;DP4=23,13,23,30;MQ=60;FQ=180;PV4=0.084,3.2e-21,0.21,0.19 GT:PL:GQ 0/1:207,0,255:99 chr2 219295835 . G A 19.1 . DP=5;VDB=0.0189;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=21.8;PV4=1,0.00092,1,0.25 GT:PL:GQ 0/1:49,0,61:52 chr2 219296545 . G A 144 . DP=83;VDB=0.0392;AF1=0.5;AC1=1;DP4=30,16,20,12;MQ=60;FQ=147;PV4=0.82,8.6e-25,1,0.42 GT:PL:GQ 0/1:174,0,255:99 chr2 219305404 . G C 106 . DP=30;VDB=0.0216;AF1=0.5;AC1=1;DP4=11,5,10,3;MQ=60;FQ=109;PV4=0.7,4e-08,1,0.23 GT:PL:GQ 0/1:136,0,255:99 chr2 219319657 . A G 222 . DP=60;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,39,19;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr2 219339283 . T C 57 . DP=31;VDB=0.0025;AF1=0.5;AC1=1;DP4=18,0,13,0;MQ=60;FQ=60;PV4=1,4.4e-12,1,0.36 GT:PL:GQ 0/1:87,0,171:90 chr2 219353195 . C T 80 . DP=20;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,14,0,6;MQ=60;FQ=83;PV4=1,1,1,1 GT:PL:GQ 0/1:110,0,170:99 chr2 219433597 . G A 91 . DP=10;VDB=0.0001;AF1=0.5;AC1=1;DP4=4,0,6,0;MQ=58;FQ=44;PV4=1,1,1,0.0016 GT:PL:GQ 0/1:121,0,71:74 chr2 219433888 . C A 93 . DP=17;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,5,1,11;MQ=60;FQ=64;PV4=1,1.7e-07,1,0.26 GT:PL:GQ 0/1:123,0,91:94 chr2 219445860 . GAAA GA 217 . INDEL;DP=20;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,9,1,9;MQ=60;FQ=210;PV4=1,0.016,1,1 GT:PL:GQ 0/1:255,0,245:99 chr2 219447912 . A G 202 . DP=24;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,7,17;MQ=55;FQ=-99 GT:PL:GQ 1/1:235,72,0:99 chr2 219447916 . Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 4.42 . INDEL;DP=23;VDB=0.0053;AF1=0.501;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-11;PV4=1,0.31,1,1 GT:PL:GQ 0/1:40,0,24:30 chr2 219480804 . G C 98 . DP=75;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,35,8,25;MQ=60;FQ=101;PV4=0.23,1.1e-23,1,1 GT:PL:GQ 0/1:128,0,255:99 chr2 219492924 . T C 225 . DP=125;VDB=0.0365;AF1=0.5;AC1=1;DP4=23,49,17,33;MQ=59;FQ=225;PV4=0.85,0.097,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 219498759 . T G 94 . DP=45;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,9,14,7;MQ=60;FQ=97;PV4=1,1.1e-15,1,0.42 GT:PL:GQ 0/1:124,0,255:99 chr2 219501133 . G A 193 . DP=123;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,29,33,27;MQ=60;FQ=196;PV4=0.45,8.1e-29,1,1 GT:PL:GQ 0/1:223,0,255:99 chr2 219501328 . G A 165 . DP=25;VDB=0.0025;AF1=0.5;AC1=1;DP4=2,9,1,13;MQ=60;FQ=167;PV4=0.56,0.27,1,1 GT:PL:GQ 0/1:195,0,201:99 chr2 219508372 . A T 157 . DP=57;VDB=0.0400;AF1=0.5;AC1=1;DP4=18,12,11,14;MQ=60;FQ=160;PV4=0.29,8.3e-22,1,0.1 GT:PL:GQ 0/1:187,0,255:99 chr2 219508988 . T C 144 . DP=55;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,15,14,18;MQ=60;FQ=147;PV4=0.41,7.8e-22,1,1 GT:PL:GQ 0/1:174,0,255:99 chr2 219509618 . C A 119 . DP=61;VDB=0.0384;AF1=0.5;AC1=1;DP4=6,26,4,21;MQ=60;FQ=122;PV4=1,1.9e-08,1,0.066 GT:PL:GQ 0/1:149,0,255:99 chr2 219513782 . T C 225 . DP=76;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,25,15,13;MQ=59;FQ=225;PV4=0.64,0.085,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 219517088 . T C 48 . DP=24;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,8,0,10;MQ=60;FQ=51;PV4=0.046,1.6e-06,1,1 GT:PL:GQ 0/1:78,0,246:81 chr2 219527005 . C T 168 . DP=49;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,10,20,11;MQ=60;FQ=171;PV4=0.23,5.6e-14,1,1 GT:PL:GQ 0/1:198,0,255:99 chr2 219529348 . C T 106 . DP=21;VDB=0.0066;AF1=0.5;AC1=1;DP4=10,3,7,1;MQ=60;FQ=109;PV4=1,0.026,1,0.39 GT:PL:GQ 0/1:136,0,247:99 chr2 219532903 . C T 124 . DP=54;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,14,9,13;MQ=59;FQ=127;PV4=0.41,5.3e-17,0.41,1 GT:PL:GQ 0/1:154,0,255:99 chr2 219532905 . G A 105 . DP=54;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,13,9,13;MQ=59;FQ=108;PV4=0.4,7.3e-22,0.42,1 GT:PL:GQ 0/1:135,0,255:99 chr2 219541056 . T C 25 . DP=11;VDB=0.0288;AF1=0.5;AC1=1;DP4=2,5,0,4;MQ=60;FQ=28;PV4=0.49,0.00077,1,0.2 GT:PL:GQ 0/1:55,0,168:58 chr2 219545309 . T C 69 . DP=128;VDB=0.0345;AF1=0.5;AC1=1;DP4=38,36,22,22;MQ=59;FQ=72;PV4=1,3.1e-44,0.45,1 GT:PL:GQ 0/1:99,0,255:99 chr2 219555262 . G A 160 . DP=48;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,8,11,13;MQ=60;FQ=163;PV4=0.25,6e-18,1,0.2 GT:PL:GQ 0/1:190,0,255:99 chr2 219558193 . C G 25 . DP=13;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,6,1,5;MQ=60;FQ=28;PV4=1,2.6e-05,1,1 GT:PL:GQ 0/1:55,0,113:58 chr2 219562675 . G A 155 . DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,18,9,15;MQ=58;FQ=158;PV4=0.55,5.1e-19,0.48,1 GT:PL:GQ 0/1:185,0,255:99 chr2 219602499 . G C 194 . DP=55;VDB=0.0393;AF1=0.5;AC1=1;DP4=28,10,13,4;MQ=60;FQ=197;PV4=1,1,1,0.089 GT:PL:GQ 0/1:224,0,255:99 chr2 219602819 . G A 225 . DP=91;VDB=0.0398;AF1=0.5;AC1=1;DP4=24,28,22,15;MQ=60;FQ=225;PV4=0.28,0.095,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 219605118 . G A 44 . DP=18;VDB=0.0008;AF1=0.5;AC1=1;DP4=4,1,10,1;MQ=59;FQ=47;PV4=1,3.4e-07,0.26,1 GT:PL:GQ 0/1:74,0,104:77 chr2 219609776 . G A 225 . DP=133;VDB=0.0380;AF1=0.5;AC1=1;DP4=55,7,58,6;MQ=60;FQ=225;PV4=0.78,0.072,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 219610433 . A G 114 . DP=28;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,0,16,3;MQ=60;FQ=94;PV4=0.53,1.8e-07,1,0.18 GT:PL:GQ 0/1:144,0,121:99 chr2 219612282 . A G 187 . DP=21;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,2,7,3;MQ=60;FQ=160;PV4=1,1,1,0.46 GT:PL:GQ 0/1:217,0,187:99 chr2 219691566 . A G 30 . DP=7;VDB=0.0042;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=24.4;PV4=1,0.0005,1,1 GT:PL:GQ 0/1:60,0,52:54 chr2 219692527 . GCCC GCCCC 214 . INDEL;DP=23;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,11;MQ=60;FQ=-104 GT:PL:GQ 1/1:255,69,0:99 chr2 219692696 . G C 79 . DP=22;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,4,3,8;MQ=60;FQ=82;PV4=0.2,3.3e-09,1,0.39 GT:PL:GQ 0/1:109,0,214:99 chr2 219692790 . AGGG AGGGG 214 . INDEL;DP=20;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,12;MQ=59;FQ=-91.5 GT:PL:GQ 1/1:255,57,0:99 chr2 219695487 . G C 4.77 . DP=4;VDB=0.0082;AF1=0.4999;AC1=1;DP4=2,0,1,1;MQ=60;FQ=6.98;PV4=1,0.00046,1,0.21 GT:PL:GQ 0/1:33,0,60:33 chr2 219696014 . G A 165 . DP=21;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,9,11;MQ=60;FQ=-87 GT:PL:GQ 1/1:198,60,0:99 chr2 219755011 . T A 117 . DP=52;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,11,14,9;MQ=59;FQ=120;PV4=1,3e-17,0.44,0.016 GT:PL:GQ 0/1:147,0,255:99 chr2 219825211 . G A 98 . DP=47;VDB=0.0244;AF1=0.5;AC1=1;DP4=15,9,13,10;MQ=60;FQ=101;PV4=0.77,5.1e-18,1,0.23 GT:PL:GQ 0/1:128,0,255:99 chr2 219849633 . G A 139 . DP=47;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,3,20,10;MQ=60;FQ=142;PV4=0.49,4.3e-15,1,1 GT:PL:GQ 0/1:169,0,200:99 chr2 219903258 . T G 143 . DP=45;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,14,10,10;MQ=60;FQ=146;PV4=0.76,3.6e-13,1,1 GT:PL:GQ 0/1:173,0,255:99 chr2 219903723 . C T 166 . DP=51;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,13,12,14;MQ=60;FQ=169;PV4=1,3.1e-13,1,0.45 GT:PL:GQ 0/1:196,0,255:99 chr2 219903787 . T C 103 . DP=35;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,11,2,18;MQ=59;FQ=106;PV4=0.37,3.1e-11,1,0.15 GT:PL:GQ 0/1:133,0,238:99 chr2 219920037 . A G 133 . DP=54;VDB=0.0400;AF1=0.5;AC1=1;DP4=18,8,19,8;MQ=60;FQ=136;PV4=1,5.7e-15,1,1 GT:PL:GQ 0/1:163,0,255:99 chr2 219920412 . A G 116 . DP=76;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,23,16,17;MQ=60;FQ=119;PV4=0.82,5.3e-24,1,1 GT:PL:GQ 0/1:146,0,255:99 chr2 219922073 . GC GCC 51.5 . INDEL;DP=4;VDB=0.0049;AF1=0.502;AC1=1;DP4=0,1,3,0;MQ=60;FQ=-13.7;PV4=0.25,1,1,1 GT:PL:GQ 0/1:89,0,21:24 chr2 219923410 . GAGAAGAAG GAGAAGAAGAAG 217 . INDEL;DP=49;VDB=0.0271;AF1=0.5;AC1=1;DP4=12,7,19,10;MQ=57;FQ=203;PV4=1,1,0.03,1 GT:PL:GQ 0/1:255,0,238:99 chr2 219941063 . G A 183 . DP=22;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,3,5,5;MQ=59;FQ=186;PV4=0.38,0.32,0.14,1 GT:PL:GQ 0/1:213,0,233:99 chr2 220012576 . G C 68 . DP=12;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,7,1,4;MQ=58;FQ=71;PV4=0.42,0.3,0.13,0.39 GT:PL:GQ 0/1:98,0,137:99 chr2 220022176 . C T 33.8 . DP=2;VDB=0.0178;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:65,6,0:10 chr2 220022435 . G C 42 . DP=19;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,8,1,7;MQ=60;FQ=45;PV4=0.6,6.3e-11,1,1 GT:PL:GQ 0/1:72,0,235:75 chr2 220028900 . A G 61 . DP=29;VDB=0.0325;AF1=0.5;AC1=1;DP4=10,7,6,4;MQ=58;FQ=64;PV4=1,2.5e-06,0.35,1 GT:PL:GQ 0/1:91,0,255:94 chr2 220033830 . A G 6.98 . DP=29;VDB=0.0400;AF1=0.4999;AC1=1;DP4=2,13,1,6;MQ=60;FQ=9.53;PV4=1,1.7e-12,1,0.28 GT:PL:GQ 0/1:36,0,238:37 chr2 220033956 . T C 6.2 . DP=5;VDB=0.0176;AF1=0.4999;AC1=1;DP4=2,1,1,1;MQ=60;FQ=8.65;PV4=1,0.15,1,0.4 GT:PL:GQ 0/1:35,0,83:36 chr2 220034497 . CCACACACAC CCACACACACAC 217 . INDEL;DP=99;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,22,23,27;MQ=59;FQ=217;PV4=0.83,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 220037393 . A G 198 . DP=61;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,27,33;MQ=60;FQ=-208 GT:PL:GQ 1/1:231,181,0:99 chr2 220037666 . A G 76 . DP=51;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,15,11,7;MQ=59;FQ=79;PV4=0.56,6.6e-13,0.35,1 GT:PL:GQ 0/1:106,0,255:99 chr2 220037756 . A G 87 . DP=62;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,20,10,13;MQ=59;FQ=90;PV4=0.8,3.1e-22,0.15,1 GT:PL:GQ 0/1:117,0,255:99 chr2 220040330 . A G 225 . DP=41;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,12,6,13;MQ=58;FQ=225;PV4=0.52,0.28,0.28,0.11 GT:PL:GQ 0/1:255,0,255:99 chr2 220041091 . G A 42 . DP=12;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,4,0,6;MQ=60;FQ=45;PV4=0.45,0.00024,1,0.047 GT:PL:GQ 0/1:72,0,122:75 chr2 220041455 . C T 168 . DP=14;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,9,5;MQ=60;FQ=-69 GT:PL:GQ 1/1:201,42,0:81 chr2 220045035 . G A 42 . DP=12;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,3,0,8;MQ=58;FQ=44.9;PV4=0.33,0.00011,1,0.13 GT:PL:GQ 0/1:72,0,90:75 chr2 220046349 . G C 160 . DP=55;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,9,15,11;MQ=60;FQ=163;PV4=0.57,7.8e-18,0.15,0.18 GT:PL:GQ 0/1:190,0,255:99 chr2 220046975 . C A 85 . DP=83;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,16,11,16;MQ=59;FQ=88;PV4=0.61,3.6e-25,0.064,0.43 GT:PL:GQ 0/1:115,0,255:99 chr2 220047393 . C T 13.2 . DP=7;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,1,0,5;MQ=60;FQ=15.5;PV4=0.29,0.00016,1,1 GT:PL:GQ 0/1:43,0,51:45 chr2 220071803 . C G 55.1 . DP=5;VDB=0.0254;AF1=0.505;AC1=1;DP4=0,1,0,3;MQ=54;FQ=-10.4;PV4=1,1,1,1 GT:PL:GQ 0/1:85,0,17:20 chr2 220072766 . G T 42.3 . DP=6;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:75,15,0:27 chr2 220072852 . C T 94 . DP=21;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,13,3;MQ=60;FQ=-75 GT:PL:GQ 1/1:127,48,0:93 chr2 220078496 . T C 111 . DP=17;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,14,2;MQ=60;FQ=-75 GT:PL:GQ 1/1:144,48,0:93 chr2 220083279 . C T 179 . DP=43;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,11,29;MQ=60;FQ=-147 GT:PL:GQ 1/1:212,120,0:99 chr2 220085845 . A G 222 . DP=81;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,43;MQ=60;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr2 220088248 . A G 53.1 . DP=6;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:86,18,0:33 chr2 220089590 . TGGGG TGGGGG 214 . INDEL;DP=36;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,13,22;MQ=60;FQ=-140 GT:PL:GQ 1/1:255,105,0:99 chr2 220089685 . G C 222 . DP=14;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,6,8;MQ=60;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr2 220100553 . C A 131 . DP=78;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,22,14,18;MQ=59;FQ=134;PV4=0.82,1.2e-26,0.42,1 GT:PL:GQ 0/1:161,0,255:99 chr2 220107997 . G A 147 . DP=64;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,18,15,14;MQ=60;FQ=150;PV4=1,1.4e-14,0.14,1 GT:PL:GQ 0/1:177,0,255:99 chr2 220113242 . T G 222 . DP=108;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,37,68;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 220118531 . G C 222 . DP=24;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,11,11;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr2 220135208 . C T 41.5 . DP=5;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:74,12,0:21 chr2 220136155 . T C 222 . DP=137;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,74,58;MQ=45;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 220136351 . G A 138 . DP=106;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,35,45;MQ=56;FQ=-268 GT:PL:GQ 1/1:171,241,0:99 chr2 220136371 . T C 222 . DP=106;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,55,45;MQ=58;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 220195738 . GTCTTCTT GTCTT 217 . INDEL;DP=19;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,10,3,3;MQ=60;FQ=217;PV4=0.099,0.0056,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 220197321 . C T 145 . DP=38;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,2,14,7;MQ=60;FQ=148;PV4=0.25,1.2e-09,1,1 GT:PL:GQ 0/1:175,0,220:99 chr2 220197388 . C A 221 . DP=55;VDB=0.0393;AF1=0.5;AC1=1;DP4=19,10,16,6;MQ=60;FQ=223;PV4=0.76,0.28,1,0.34 GT:PL:GQ 0/1:251,0,255:99 chr2 220197492 . C G 145 . DP=52;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,22,5,20;MQ=60;FQ=148;PV4=0.73,5.7e-15,1,1 GT:PL:GQ 0/1:175,0,255:99 chr2 220239534 . G A 94 . DP=14;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,12,2;MQ=58;FQ=-69 GT:PL:GQ 1/1:127,42,0:81 chr2 220239561 . C G 222 . DP=18;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,15,3;MQ=59;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr2 220246218 . T C 211 . DP=44;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,21,21;MQ=59;FQ=-153 GT:PL:GQ 1/1:244,126,0:99 chr2 220249299 . ctttttttt cTtttttttt 4.41 . INDEL;DP=27;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,22;MQ=60;FQ=-101 GT:PL:GQ 1/1:43,66,0:48 chr2 220249329 . C T 52.1 . DP=6;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:85,18,0:33 chr2 220250147 . A G 222 . DP=52;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,39,10;MQ=59;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr2 220250322 . C A 222 . DP=63;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,19,41;MQ=60;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr2 220250826 . G A 197 . DP=30;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,5,24;MQ=60;FQ=-114 GT:PL:GQ 1/1:230,87,0:99 chr2 220251178 . T C 222 . DP=56;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,18,36;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr2 220251208 . T C 204 . DP=41;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,20,3,13;MQ=60;FQ=207;PV4=1,0.2,1,0.19 GT:PL:GQ 0/1:234,0,255:99 chr2 220252287 . CTCG C 214 . INDEL;DP=9;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,8,1;MQ=49;FQ=-61.5 GT:PL:GQ 1/1:255,27,0:51 chr2 220264412 . A G 198 . DP=26;VDB=0.0325;AF1=0.5;AC1=1;DP4=4,9,7,5;MQ=59;FQ=201;PV4=0.24,0.15,1,0.09 GT:PL:GQ 0/1:228,0,244:99 chr2 220264543 . C CAT 214 . INDEL;DP=58;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,39,16;MQ=60;FQ=-201 GT:PL:GQ 1/1:255,166,0:99 chr2 220283259 . A G 217 . DP=14;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,6,7;MQ=60;FQ=-66 GT:PL:GQ 1/1:250,39,0:75 chr2 220283277 . T C 208 . DP=20;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,7;MQ=60;FQ=-87 GT:PL:GQ 1/1:241,60,0:99 chr2 220283826 . T G 187 . DP=29;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,18;MQ=58;FQ=-108 GT:PL:GQ 1/1:220,81,0:99 chr2 220284779 . C T 22 . DP=13;VDB=0.0301;AF1=0.5;AC1=1;DP4=7,2,3,1;MQ=60;FQ=25;PV4=1,0.039,1,1 GT:PL:GQ 0/1:52,0,179:55 chr2 220285182 . C A 92 . DP=33;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,2,17,3;MQ=59;FQ=95;PV4=1,2.7e-12,0.24,0.29 GT:PL:GQ 0/1:122,0,176:99 chr2 220285309 . C T 225 . DP=81;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,20,27,21;MQ=60;FQ=225;PV4=0.11,0.23,1,0.093 GT:PL:GQ 0/1:255,0,255:99 chr2 220285666 . G C 225 . DP=61;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,28,5,20;MQ=60;FQ=225;PV4=1,0.097,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 220286142 . G A 214 . DP=53;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,18,15,6;MQ=59;FQ=217;PV4=0.049,0.43,0.49,1 GT:PL:GQ 0/1:244,0,255:99 chr2 220306413 . G T 93 . DP=10;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,2,6;MQ=60;FQ=-51 GT:PL:GQ 1/1:126,24,0:45 chr2 220315970 . G A 137 . DP=19;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,3,15;MQ=60;FQ=-81 GT:PL:GQ 1/1:170,54,0:99 chr2 220330661 . A G 119 . DP=6;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:152,15,0:27 chr2 220330724 . C T 222 . DP=33;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,26,4;MQ=59;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr2 220330804 . T C 222 . DP=47;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,21,25;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr2 220333950 . T C 201 . DP=66;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,46,16;MQ=60;FQ=-214 GT:PL:GQ 1/1:234,187,0:99 chr2 220337196 . G A 65 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:97,9,0:16 chr2 220346596 . C T 3.41 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:32,6,0:4 chr2 220353104 . A G 201 . DP=32;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,15,17;MQ=59;FQ=-123 GT:PL:GQ 1/1:234,96,0:99 chr2 220353130 . TA T 208 . INDEL;DP=40;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,7,14,4;MQ=59;FQ=211;PV4=0.5,0.056,1,0.47 GT:PL:GQ 0/1:246,0,255:99 chr2 220356806 . C T 222 . DP=67;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,45,17;MQ=59;FQ=-187;PV4=1,1,1,0.24 GT:PL:GQ 1/1:255,160,0:99 chr2 220362899 . C G 222 . DP=63;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,25,37;MQ=59;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr2 220366953 . G C 37.1 . DP=8;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,7,0;MQ=57;FQ=-48 GT:PL:GQ 1/1:70,21,0:39 chr2 220371035 . C G 157 . DP=58;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,18,12,15;MQ=59;FQ=160;PV4=1,2.6e-18,0.46,1 GT:PL:GQ 0/1:187,0,255:99 chr2 220371181 . T A 218 . DP=16;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,14;MQ=59;FQ=-75 GT:PL:GQ 1/1:251,48,0:93 chr2 220379560 . C G,T 165 . DP=50;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,18,24;MQ=60;FQ=-147 GT:PL:GQ 1/1:198,120,0,189,83,183:99 chr2 220380125 . G A 23 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:55,9,0:15 chr2 220397811 . T C 93 . DP=15;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,14;MQ=60;FQ=-69 GT:PL:GQ 1/1:126,42,0:81 chr2 220397825 . C T 26 . DP=12;VDB=0.0007;AF1=0.5;AC1=1;DP4=0,8,0,3;MQ=60;FQ=29;PV4=1,0.18,1,0.38 GT:PL:GQ 0/1:56,0,140:59 chr2 220402624 . G T 44 . DP=8;VDB=0.0003;AF1=0.5;AC1=1;DP4=2,1,4,1;MQ=57;FQ=28;PV4=1,0.23,1,1 GT:PL:GQ 0/1:74,0,55:58 chr2 220402671 . G T 132 . DP=22;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,17,3;MQ=56;FQ=-87 GT:PL:GQ 1/1:165,60,0:99 chr2 220402680 . T C 222 . DP=22;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,18,3;MQ=57;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr2 220404381 . A G 222 . DP=31;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,2,24;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr2 220405321 . T C,A 206 . DP=63;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,31,27;MQ=60;FQ=-196 GT:PL:GQ 1/1:239,169,0,207,104,201:99 chr2 220406239 . T G 83 . DP=26;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,22,3;MQ=60;FQ=-102 GT:PL:GQ 1/1:116,75,0:99 chr2 220406722 . T C 219 . DP=60;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,19,39;MQ=60;FQ=-202 GT:PL:GQ 1/1:252,175,0:99 chr2 220412256 . T C 150 . DP=23;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,13,10;MQ=59;FQ=-96 GT:PL:GQ 1/1:183,69,0:99 chr2 220413658 . CAA CA 51.5 . INDEL;DP=6;VDB=0.0000;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=18.5;PV4=1,0.00046,1,1 GT:PL:GQ 0/1:89,0,53:56 chr2 220414016 . C T 137 . DP=34;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,3,29;MQ=60;FQ=-123 GT:PL:GQ 1/1:170,96,0:99 chr2 220415717 . G A 9.49 . DP=3;VDB=0.0107;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:41,9,0:12 chr2 220416570 . C T 104 . DP=14;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,2,12;MQ=60;FQ=-69 GT:PL:GQ 1/1:137,42,0:81 chr2 220416591 . C T 109 . DP=13;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-63 GT:PL:GQ 1/1:142,36,0:69 chr2 220416803 . A T 222 . DP=54;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,32,16;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr2 220416967 . C T 165 . DP=20;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,3,16;MQ=59;FQ=-84 GT:PL:GQ 1/1:198,57,0:99 chr2 220419236 . T C 222 . DP=51;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,28,21;MQ=59;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr2 220419339 . T C 222 . DP=64;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,28,33;MQ=59;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr2 220420956 . A G 222 . DP=18;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,13;MQ=60;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr2 220421417 . C G 222 . DP=66;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,19,41;MQ=60;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr2 220422774 . A G 102 . DP=68;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,15,20,10;MQ=60;FQ=105;PV4=0.62,6.3e-21,0.13,0.059 GT:PL:GQ 0/1:132,0,255:99 chr2 220427347 . G T 175 . DP=54;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,18,10,17;MQ=59;FQ=178;PV4=0.35,1.7e-15,1,1 GT:PL:GQ 0/1:205,0,255:99 chr2 220427395 . G A 225 . DP=30;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,7,4,17;MQ=58;FQ=127;PV4=1,0.06,1,0.38 GT:PL:GQ 0/1:255,0,154:99 chr2 220427428 . GA G 112 . INDEL;DP=17;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,4,0,11;MQ=59;FQ=87.5;PV4=0.31,3.2e-05,0.26,0.26 GT:PL:GQ 0/1:150,0,122:99 chr2 220427996 . T C 6.79 . DP=3;VDB=0.0010;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:37,6,0:7 chr2 220428381 . A T 225 . DP=130;VDB=0.0298;AF1=0.5;AC1=1;DP4=29,44,14,37;MQ=59;FQ=225;PV4=0.18,1,0.22,1 GT:PL:GQ 0/1:255,0,255:99 chr2 220430203 . C T 195 . DP=123;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,31,88;MQ=59;FQ=-282 GT:PL:GQ 1/1:228,255,0:99 chr2 220431631 . G T 163 . DP=56;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,10,21,10;MQ=60;FQ=166;PV4=0.57,5.9e-22,1,1 GT:PL:GQ 0/1:193,0,255:99 chr2 220431919 . A G 17.1 . DP=3;VDB=0.0050;AF1=1;AC1=2;DP4=0,0,0,3;MQ=52;FQ=-36 GT:PL:GQ 1/1:49,9,0:15 chr2 220432014 . G A 12.3 . DP=17;VDB=0.0164;AF1=0.5;AC1=1;DP4=8,3,2,3;MQ=59;FQ=15.1;PV4=0.3,5.7e-06,1,1 GT:PL:GQ 0/1:42,0,219:44 chr2 220435034 . A G 222 . DP=126;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,75,48;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 220437081 . C T 79 . DP=12;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,4,5,0;MQ=60;FQ=82;PV4=0.081,1,1,0.32 GT:PL:GQ 0/1:109,0,176:99 chr2 220439678 . C T 136 . DP=77;VDB=0.0298;AF1=0.5;AC1=1;DP4=25,20,24,7;MQ=59;FQ=139;PV4=0.056,6.4e-20,0.4,0.49 GT:PL:GQ 0/1:166,0,255:99 chr2 220462640 . G T 222 . DP=75;VDB=0.0345;AF1=1;AC1=2;DP4=1,0,49,24;MQ=60;FQ=-211;PV4=1,0.00078,1,1 GT:PL:GQ 1/1:255,184,0:99 chr2 220466199 . G T 222 . DP=76;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,37,39;MQ=60;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr2 220471116 . C G 209 . DP=46;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,26;MQ=59;FQ=-156 GT:PL:GQ 1/1:242,129,0:99 chr2 220473355 . G A 225 . DP=35;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,9,8,10;MQ=59;FQ=225;PV4=1,0.38,0.17,0.2 GT:PL:GQ 0/1:255,0,255:99 chr2 220476443 . C T 219 . DP=69;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,36,30;MQ=59;FQ=-226 GT:PL:GQ 1/1:252,199,0:99 chr2 220476645 . T C 222 . DP=49;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,15,32;MQ=59;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr2 220479055 . C A 13 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr2 220479312 . T C 199 . DP=65;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,32,29;MQ=59;FQ=-211 GT:PL:GQ 1/1:232,184,0:99 chr2 220480639 . T C 222 . DP=18;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,16;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr2 220480693 . G C 108 . DP=9;VDB=0.0263;AF1=1;AC1=2;DP4=0,0,4,5;MQ=60;FQ=-54 GT:PL:GQ 1/1:141,27,0:51 chr2 220494118 . A C 64.1 . DP=16;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,4,3;MQ=60;FQ=-48 GT:PL:GQ 1/1:97,21,0:39 chr2 220499892 . C T 56 . DP=9;VDB=0.0003;AF1=0.5;AC1=1;DP4=2,0,5,1;MQ=60;FQ=23;PV4=1,1.1e-05,1,1 GT:PL:GQ 0/1:86,0,50:53 chr2 220500321 . C G 85 . DP=22;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,7,7,4;MQ=60;FQ=88;PV4=0.39,4.5e-08,1,0.04 GT:PL:GQ 0/1:115,0,222:99 chr2 220500423 . A G 187 . DP=31;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,15;MQ=60;FQ=-114 GT:PL:GQ 1/1:220,87,0:99 chr2 220500426 . A G 222 . DP=33;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,15,16;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr2 220502367 . A C 225 . DP=49;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,17,6,18;MQ=60;FQ=225;PV4=0.75,1,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr2 220505265 . T C 153 . DP=118;VDB=0.0392;AF1=0.5;AC1=1;DP4=27,32,25,29;MQ=60;FQ=156;PV4=1,4.6e-23,0.15,1 GT:PL:GQ 0/1:183,0,255:99 chr2 220506522 . G A 117 . DP=30;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,11,2,16;MQ=60;FQ=115;PV4=0.51,4.4e-08,1,1 GT:PL:GQ 0/1:147,0,144:99 chr2 220771223 . C T 111 . DP=71;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,18,10,25;MQ=60;FQ=114;PV4=0.21,1e-28,1,1 GT:PL:GQ 0/1:141,0,255:99 chr2 220771290 . G A 223 . DP=30;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,12,4,12;MQ=60;FQ=165;PV4=0.34,0.12,1,0.4 GT:PL:GQ 0/1:253,0,192:99 chr2 220771310 . A G 140 . DP=23;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,9,1,9;MQ=60;FQ=143;PV4=1,0.23,1,1 GT:PL:GQ 0/1:170,0,206:99 chr2 220771378 . A G 18.1 . DP=5;VDB=0.0116;AF1=0.5;AC1=1;DP4=1,1,0,2;MQ=60;FQ=21;PV4=1,0.15,1,0.17 GT:PL:GQ 0/1:48,0,65:51 chr2 222290829 . C T 225 . DP=83;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,28,10,30;MQ=59;FQ=225;PV4=0.47,0.12,0.49,1 GT:PL:GQ 0/1:255,0,255:99 chr2 222290902 . A G 57 . DP=38;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,16,2,15;MQ=58;FQ=60;PV4=1,1.3e-15,1,1 GT:PL:GQ 0/1:87,0,248:90 chr2 222301357 . T C 199 . DP=90;VDB=0.0298;AF1=1;AC1=2;DP4=0,1,22,66;MQ=59;FQ=-266;PV4=1,0.0072,1,0.23 GT:PL:GQ 1/1:232,239,0:99 chr2 222301713 . C T 214 . DP=58;VDB=0.0271;AF1=0.5;AC1=1;DP4=26,8,17,4;MQ=60;FQ=217;PV4=0.75,0.46,1,1 GT:PL:GQ 0/1:244,0,255:99 chr2 222301912 . C T 225 . DP=49;VDB=0.0140;AF1=0.5;AC1=1;DP4=4,16,6,20;MQ=59;FQ=225;PV4=1,0.23,1,0.23 GT:PL:GQ 0/1:255,0,255:99 chr2 222307534 . G T 125 . DP=102;VDB=0.0365;AF1=0.5;AC1=1;DP4=27,20,30,22;MQ=60;FQ=128;PV4=1,4.6e-35,0.089,1 GT:PL:GQ 0/1:155,0,255:99 chr2 222320427 . G A 219 . DP=45;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,29;MQ=59;FQ=-159 GT:PL:GQ 1/1:252,132,0:99 chr2 222321225 . C T 38.3 . DP=5;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:71,15,0:27 chr2 222431521 . G A 6.2 . DP=19;VDB=0.0271;AF1=0.4999;AC1=1;DP4=2,10,2,5;MQ=55;FQ=8.65;PV4=0.6,4.7e-10,0.23,1 GT:PL:GQ 0/1:35,0,204:36 chr2 222434898 . T C 148 . DP=23;VDB=0.0216;AF1=0.5;AC1=1;DP4=7,6,3,6;MQ=59;FQ=151;PV4=0.41,0.35,1,1 GT:PL:GQ 0/1:178,0,249:99 chr2 223161624 . A G 31 . DP=4;VDB=0.0159;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=28.6;PV4=1,1,1,0.42 GT:PL:GQ 0/1:61,0,57:59 chr2 223161889 . A G 222 . DP=21;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,5,15;MQ=59;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr2 223423362 . A G 222 . DP=112;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,60,50;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 223436607 . C T 222 . DP=30;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,16;MQ=60;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr2 223489249 . GTTT GTT 95.5 . INDEL;DP=20;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,8,2,5;MQ=60;FQ=98.5;PV4=1,2.1e-11,1,1 GT:PL:GQ 0/1:133,0,175:99 chr2 223493435 . G A 222 . DP=62;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,40,19;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr2 223493440 . G A 225 . DP=64;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,11,23,11;MQ=60;FQ=225;PV4=0.6,0.42,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 223520905 . G C 144 . DP=48;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,6,41;MQ=59;FQ=-168 GT:PL:GQ 1/1:177,141,0:99 chr2 223520978 . A G 140 . DP=8;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:173,24,0:45 chr2 223785504 . T C 62 . DP=10;VDB=0.0003;AF1=0.5;AC1=1;DP4=3,0,6,1;MQ=60;FQ=45;PV4=1,4.3e-06,1,0.5 GT:PL:GQ 0/1:92,0,72:75 chr2 223785846 . G A 181 . DP=24;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,7,1,13;MQ=60;FQ=96;PV4=1,0.45,1,0.26 GT:PL:GQ 0/1:211,0,123:99 chr2 223787559 . G A 99 . DP=35;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,19,3,12;MQ=59;FQ=102;PV4=0.29,5.2e-11,1,1 GT:PL:GQ 0/1:129,0,215:99 chr2 223787691 . G A 39 . DP=4;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,2,1,1;MQ=60;FQ=24;PV4=1,1,1,1 GT:PL:GQ 0/1:69,0,51:54 chr2 223793480 . C T 56.5 . DP=4;VDB=0.0254;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:89,12,0:21 chr2 223799207 . C T 49 . DP=10;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:82,24,0:45 chr2 223806193 . TC T 20.5 . INDEL;DP=15;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,2,4,0;MQ=60;FQ=23.5;PV4=1,0.17,1,0.43 GT:PL:GQ 0/1:58,0,210:61 chr2 223917629 . C T 222 . DP=41;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,23,11;MQ=59;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr2 223917812 . T C 195 . DP=38;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,12,25;MQ=59;FQ=-138 GT:PL:GQ 1/1:228,111,0:99 chr2 223917983 . T G 222 . DP=70;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,44,25;MQ=60;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr2 223918080 . C G 153 . DP=67;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,23,41;MQ=60;FQ=-220 GT:PL:GQ 1/1:186,193,0:99 chr2 224629876 . ccatcatcatcatcatcatcatc cCATCATcatcatcatcatcatcatcatc 89.5 . INDEL;DP=25;VDB=0.0140;AF1=0.5;AC1=1;DP4=14,1,10,0;MQ=51;FQ=92.5;PV4=1,0.086,4.8e-11,0.089 GT:PL:GQ 0/1:127,0,255:99 chr2 224640803 . CA CAAA 217 . INDEL;DP=102;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,29,18,25;MQ=59;FQ=217;PV4=0.55,1,0.21,0.47 GT:PL:GQ 0/1:255,0,255:99 chr2 224743373 . C T 213 . DP=48;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,36,11;MQ=60;FQ=-168 GT:PL:GQ 1/1:246,141,0:99 chr2 224743591 . C T 88 . DP=24;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,22;MQ=59;FQ=-96 GT:PL:GQ 1/1:121,69,0:99 chr2 224744701 . A G 125 . DP=18;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,16,2;MQ=60;FQ=-81 GT:PL:GQ 1/1:158,54,0:99 chr2 224758906 . C T 128 . DP=52;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,46,4;MQ=60;FQ=-178 GT:PL:GQ 1/1:161,151,0:99 chr2 224760494 . G A 39.3 . DP=7;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:72,15,0:27 chr2 224763816 . C T 222 . DP=34;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,31;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr2 224765894 . G A 79 . DP=23;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,21,2;MQ=60;FQ=-96 GT:PL:GQ 1/1:112,69,0:99 chr2 224777094 . T C 132 . DP=70;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,34,7,23;MQ=58;FQ=135;PV4=0.34,2.3e-28,0.04,0.056 GT:PL:GQ 0/1:162,0,255:99 chr2 224777105 . GTGATT GTGATTGATT 217 . INDEL;DP=66;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,32,2,20;MQ=59;FQ=217;PV4=1,1,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr2 224856650 . G A 225 . DP=54;VDB=0.0398;AF1=0.5;AC1=1;DP4=18,6,20,4;MQ=60;FQ=225;PV4=0.72,1,1,0.2 GT:PL:GQ 0/1:255,0,255:99 chr2 224862821 . C T 225 . DP=165;VDB=0.0365;AF1=0.5;AC1=1;DP4=49,36,43,29;MQ=60;FQ=225;PV4=0.87,0.41,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 224862842 . A G 225 . DP=170;VDB=0.0380;AF1=0.5;AC1=1;DP4=46,43,47,32;MQ=60;FQ=225;PV4=0.35,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 224863090 . C T 42 . DP=16;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,4,0,11;MQ=58;FQ=43.6;PV4=1,2.5e-09,0.28,1 GT:PL:GQ 0/1:72,0,76:74 chr2 225368321 . A G 122 . DP=26;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,24,2;MQ=60;FQ=-105 GT:PL:GQ 1/1:155,78,0:99 chr2 225434445 . A G 186 . DP=9;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,6,2;MQ=60;FQ=-51 GT:PL:GQ 1/1:219,24,0:45 chr2 225665074 . G A 103 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:136,15,0:27 chr2 225688100 . G A 135 . DP=37;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,34,3;MQ=59;FQ=-138 GT:PL:GQ 1/1:168,111,0:99 chr2 225702565 . G A 222 . DP=119;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,38,75;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 225709336 . C A 124 . DP=8;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,8,0;MQ=57;FQ=-51 GT:PL:GQ 1/1:157,24,0:45 chr2 225719571 . gccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaa gccaaccaaccaaccaaccaaccaaccaaccaaccaa 106 . INDEL;DP=19;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,19,0;MQ=29;FQ=-91.5 GT:PL:GQ 1/1:147,57,0:99 chr2 225719693 . G A 136 . DP=118;VDB=0.0298;AF1=1;AC1=2;DP4=1,0,41,44;MQ=51;FQ=-257;PV4=0.49,5.7e-05,1,0.47 GT:PL:GQ 1/1:169,230,0:99 chr2 225796458 . ATCTCT ATCT 196 . INDEL;DP=10;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,10;MQ=58;FQ=-64.5 GT:PL:GQ 1/1:237,30,0:57 chr2 225811581 . T A 146 . DP=114;VDB=0.0271;AF1=1;AC1=2;DP4=0,1,83,27;MQ=60;FQ=-282;PV4=0.25,8.1e-06,1,0.26 GT:PL:GQ 1/1:179,255,0:99 chr2 225848390 . T A 20.1 . DP=7;VDB=0.0004;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=14.5;PV4=1,0.00088,1,1 GT:PL:GQ 0/1:50,0,42:44 chr2 225848579 . T C 156 . DP=65;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,27,36;MQ=60;FQ=-217 GT:PL:GQ 1/1:189,190,0:99 chr2 225875158 . A C 20 . DP=4;VDB=0.0234;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:52,9,0:15 chr2 225907150 . C T 28 . DP=6;VDB=0.0225;AF1=0.5;AC1=1;DP4=1,2,1,1;MQ=60;FQ=30.4;PV4=1,1,1,0.022 GT:PL:GQ 0/1:58,0,66:60 chr2 226273490 . T C 58.1 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:91,18,0:33 chr2 226273689 . T C 222 . DP=61;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,19,41;MQ=60;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr2 226446621 . T C 222 . DP=77;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,61,11;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr2 226491770 . A C 222 . DP=69;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,20,45;MQ=59;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr2 227773466 . T C 85 . DP=26;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,23,2;MQ=60;FQ=-102 GT:PL:GQ 1/1:118,75,0:99 chr2 227779191 . C A 64 . DP=18;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,17;MQ=59;FQ=-81 GT:PL:GQ 1/1:97,54,0:99 chr2 227807202 . G T 179 . DP=18;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,17,0;MQ=57;FQ=-78 GT:PL:GQ 1/1:212,51,0:99 chr2 227872182 . G A 106 . DP=24;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,18;MQ=60;FQ=-93 GT:PL:GQ 1/1:139,66,0:99 chr2 227872995 . T C 222 . DP=49;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,11,36;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr2 227873028 . A G 109 . DP=39;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,33;MQ=60;FQ=-141 GT:PL:GQ 1/1:142,114,0:99 chr2 227874957 . C T 162 . DP=17;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,13,3;MQ=60;FQ=-75 GT:PL:GQ 1/1:195,48,0:93 chr2 227877037 . G A 205 . DP=30;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,21;MQ=59;FQ=-117 GT:PL:GQ 1/1:238,90,0:99 chr2 227886773 . A G 113 . DP=39;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,34,4;MQ=60;FQ=-141 GT:PL:GQ 1/1:146,114,0:99 chr2 227886925 . C T 222 . DP=43;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,35;MQ=60;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr2 227892619 . C T 153 . DP=23;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,18,5;MQ=60;FQ=-96 GT:PL:GQ 1/1:186,69,0:99 chr2 227892720 . C T 205 . DP=23;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,8,14;MQ=59;FQ=-93 GT:PL:GQ 1/1:238,66,0:99 chr2 227895125 . A G 222 . DP=16;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,10,5;MQ=58;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr2 227896652 . C G 148 . DP=10;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:181,30,0:57 chr2 227896886 . C T 150 . DP=61;VDB=0.0322;AF1=1;AC1=2;DP4=0,1,26,33;MQ=59;FQ=-178;PV4=1,2.4e-08,1,1 GT:PL:GQ 1/1:183,151,0:99 chr2 227896976 . C T 158 . DP=41;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,11,29;MQ=59;FQ=-147 GT:PL:GQ 1/1:191,120,0:99 chr2 227897076 . A G 61 . DP=8;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:94,24,0:45 chr2 227912331 . G A 89 . DP=17;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,0,16;MQ=60;FQ=-75 GT:PL:GQ 1/1:122,48,0:93 chr2 227914655 . C G 124 . DP=7;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:157,21,0:39 chr2 227914975 . T G 62 . DP=10;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:95,27,0:51 chr2 227915832 . G A 222 . DP=66;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,17,39;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr2 227917240 . C G 165 . DP=9;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:198,24,0:45 chr2 227922454 . G A 111 . DP=16;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,1,15;MQ=60;FQ=-75 GT:PL:GQ 1/1:144,48,0:93 chr2 227922470 . T C 64 . DP=10;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,6,0,4;MQ=60;FQ=67;PV4=1,1,1,1 GT:PL:GQ 0/1:94,0,125:97 chr2 227924360 . ATTTTT ATTTTTT 84.5 . INDEL;DP=27;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,6,5,10;MQ=60;FQ=49.5;PV4=1,1,1,1 GT:PL:GQ 0/1:122,0,84:87 chr2 227925097 . C T 47.1 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:80,18,0:33 chr2 227954599 . G A 194 . DP=45;VDB=0.0399;AF1=1;AC1=2;DP4=0,1,16,24;MQ=59;FQ=-123;PV4=1,0.11,1,1 GT:PL:GQ 1/1:227,96,0:99 chr2 227967601 . ACAATATTTCAGCAATAGGGAAAGCAATATTTCAGCAATAGGGAAA ACAATATTTCAGCAATAGGGAAA 43.5 . INDEL;DP=68;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,28,1,4;MQ=58;FQ=46.5;PV4=0.28,0.054,1.7e-07,1 GT:PL:GQ 0/1:81,0,255:84 chr2 227968553 . A C 4.13 . DP=3;VDB=0.0196;AF1=0.5002;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-3.24;PV4=1,0.037,1,0.33 GT:PL:GQ 0/1:32,0,28:30 chr2 227973410 . C A 225 . DP=45;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,5,16,6;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 227973623 . A G 141 . DP=42;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,12,6,15;MQ=60;FQ=144;PV4=1,6.7e-12,1,0.098 GT:PL:GQ 0/1:171,0,255:99 chr2 227974113 . A G 225 . DP=113;VDB=0.0400;AF1=0.5;AC1=1;DP4=33,28,24,22;MQ=60;FQ=225;PV4=0.85,1,0.42,0.48 GT:PL:GQ 0/1:255,0,255:99 chr2 227974191 . A G 225 . DP=46;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,20,4,18;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 228104760 . C T 147 . DP=72;VDB=0.0322;AF1=0.5;AC1=1;DP4=32,8,22,9;MQ=60;FQ=150;PV4=0.41,3.9e-17,1,1 GT:PL:GQ 0/1:177,0,255:99 chr2 228109784 . C T 77 . DP=19;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,8,2,7;MQ=60;FQ=80;PV4=0.47,3.8e-10,1,0.44 GT:PL:GQ 0/1:107,0,147:99 chr2 228111435 . T C 133 . DP=44;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,8,17,5;MQ=60;FQ=136;PV4=0.51,6e-18,1,1 GT:PL:GQ 0/1:163,0,255:99 chr2 228111600 . G T 25 . DP=14;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,5,1,7;MQ=60;FQ=28;PV4=1,7.8e-11,1,1 GT:PL:GQ 0/1:55,0,140:58 chr2 228111604 . G T 44 . DP=14;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,5,1,6;MQ=60;FQ=47;PV4=1,1.3e-07,1,1 GT:PL:GQ 0/1:74,0,135:77 chr2 228112186 . A G 222 . DP=77;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,53,21;MQ=60;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr2 228113175 . A G 120 . DP=53;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,6,21,11;MQ=60;FQ=123;PV4=1,3.7e-18,0.22,1 GT:PL:GQ 0/1:150,0,254:99 chr2 228118403 . T G 132 . DP=27;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,24;MQ=59;FQ=-105 GT:PL:GQ 1/1:165,78,0:99 chr2 228118949 . C G 201 . DP=26;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,10,3,10;MQ=60;FQ=188;PV4=1,0.15,1,0.26 GT:PL:GQ 0/1:231,0,215:99 chr2 228121147 . T G 27 . DP=17;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,5,3,5;MQ=60;FQ=30;PV4=1,8.1e-09,1,1 GT:PL:GQ 0/1:57,0,204:60 chr2 228124702 . A G 60 . DP=15;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,4,4,3;MQ=60;FQ=63;PV4=1,4.7e-10,1,1 GT:PL:GQ 0/1:90,0,205:93 chr2 228128540 . C T 163 . DP=51;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,36,10;MQ=59;FQ=-165 GT:PL:GQ 1/1:196,138,0:99 chr2 228131912 . C A 25 . DP=23;VDB=0.0019;AF1=0.5;AC1=1;DP4=3,10,0,10;MQ=59;FQ=28;PV4=0.23,2.4e-15,1,0.49 GT:PL:GQ 0/1:55,0,242:58 chr2 228135631 . C T 135 . DP=56;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,20,7,19;MQ=60;FQ=138;PV4=0.77,3.1e-14,1,1 GT:PL:GQ 0/1:165,0,255:99 chr2 228144706 . G T 183 . DP=27;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,6,21;MQ=60;FQ=-108 GT:PL:GQ 1/1:216,81,0:99 chr2 228145543 . C T 207 . DP=43;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,28,13;MQ=59;FQ=-150 GT:PL:GQ 1/1:240,123,0:99 chr2 228147093 . A G 86 . DP=44;VDB=0.0216;AF1=0.5;AC1=1;DP4=20,0,21,3;MQ=60;FQ=89;PV4=0.24,7.1e-22,1,0.18 GT:PL:GQ 0/1:116,0,173:99 chr2 228149107 . A G 142 . DP=15;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,6,8;MQ=58;FQ=-69 GT:PL:GQ 1/1:175,42,0:81 chr2 228158418 . T C 222 . DP=20;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,17,3;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr2 228158648 . G C 40.8 . DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:72,6,0:10 chr2 228159063 . T C 13 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr2 228169632 . C T 34 . DP=3;VDB=0.0167;AF1=0.5003;AC1=1;DP4=1,0,2,0;MQ=60;FQ=4.77;PV4=1,1,1,1 GT:PL:GQ 0/1:64,0,30:33 chr2 228194570 . G A 222 . DP=71;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,54;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr2 228197368 . A G 141 . DP=41;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,4,34;MQ=60;FQ=-141 GT:PL:GQ 1/1:174,114,0:99 chr2 228204929 . C T 193 . DP=41;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,34,7;MQ=59;FQ=-150 GT:PL:GQ 1/1:226,123,0:99 chr2 228204982 . C T 155 . DP=69;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,40,27;MQ=60;FQ=-229 GT:PL:GQ 1/1:188,202,0:99 chr2 228207625 . G A 146 . DP=41;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,19,0,18;MQ=60;FQ=149;PV4=0.24,0.45,1,0.25 GT:PL:GQ 0/1:176,0,255:99 chr2 228220288 . A G 4.77 . DP=10;VDB=0.0313;AF1=0.4999;AC1=1;DP4=5,1,3,0;MQ=60;FQ=6.99;PV4=1,0.00017,1,1 GT:PL:GQ 0/1:33,0,144:33 chr2 228230945 . G A 84 . DP=111;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,32,17,46;MQ=60;FQ=87;PV4=0.83,5e-53,1,1 GT:PL:GQ 0/1:114,0,255:99 chr2 228396028 . C A 12.3 . DP=10;VDB=0.0173;AF1=0.5;AC1=1;DP4=0,8,0,2;MQ=60;FQ=15.1;PV4=1,0.44,1,0.43 GT:PL:GQ 0/1:42,0,154:44 chr2 228399480 . T C 75 . DP=17;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,16,0;MQ=59;FQ=-75 GT:PL:GQ 1/1:108,48,0:93 chr2 228416712 . A G 202 . DP=170;VDB=0.0365;AF1=1;AC1=2;DP4=1,1,116,46;MQ=59;FQ=-282;PV4=0.49,2e-08,1,0.14 GT:PL:GQ 1/1:235,255,0:99 chr2 228476253 . C G 225 . DP=42;VDB=0.0398;AF1=0.5;AC1=1;DP4=11,9,10,10;MQ=60;FQ=225;PV4=1,1,1,0.48 GT:PL:GQ 0/1:255,0,255:99 chr2 228477814 . G C 150 . DP=26;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,14,2,8;MQ=59;FQ=153;PV4=0.63,0.15,1,0.099 GT:PL:GQ 0/1:180,0,231:99 chr2 228493211 . G A 104 . DP=31;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,7,12,3;MQ=59;FQ=107;PV4=0.25,2.8e-06,1,0.27 GT:PL:GQ 0/1:134,0,255:99 chr2 228560800 . GAAAAAAAA GAAAAAAA 71.5 . INDEL;DP=61;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,28,29;MQ=60;FQ=-207 GT:PL:GQ 1/1:112,172,0:99 chr2 228565656 . G A 187 . DP=26;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,17,7;MQ=60;FQ=-99 GT:PL:GQ 1/1:220,72,0:99 chr2 228758387 . taaacaaacaaacaaacaaacaaaca tAAACaaacaaacaaacaaacaaacaaaca 194 . INDEL;DP=21;VDB=0.0014;AF1=0.5;AC1=1;DP4=13,0,8,0;MQ=60;FQ=197;PV4=1,1,1,1 GT:PL:GQ 0/1:232,0,255:99 chr2 228767618 . T C 185 . DP=23;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,23,0;MQ=60;FQ=-96 GT:PL:GQ 1/1:218,69,0:99 chr2 228767631 . G T 59 . DP=37;VDB=0.0042;AF1=0.5;AC1=1;DP4=21,0,16,0;MQ=60;FQ=62;PV4=1,2.9e-20,1,1 GT:PL:GQ 0/1:89,0,183:92 chr2 228776996 . T C 53 . DP=28;VDB=0.0006;AF1=0.5;AC1=1;DP4=15,0,13,0;MQ=59;FQ=56;PV4=1,1.1e-17,1,1 GT:PL:GQ 0/1:83,0,175:86 chr2 228783479 . C A 108 . DP=84;VDB=0.0365;AF1=0.5;AC1=1;DP4=28,14,26,11;MQ=60;FQ=111;PV4=0.81,4.8e-31,1,1 GT:PL:GQ 0/1:138,0,255:99 chr2 228855684 . C T 104 . DP=39;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,3,18,3;MQ=60;FQ=107;PV4=1,3.9e-16,1,1 GT:PL:GQ 0/1:134,0,242:99 chr2 228883029 . A C 225 . DP=76;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,14,23,19;MQ=60;FQ=225;PV4=0.82,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 228883721 . T C 222 . DP=67;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,29,35;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr2 228886413 . TGG TG 151 . INDEL;DP=51;VDB=0.0244;AF1=0.5;AC1=1;DP4=20,4,25,1;MQ=60;FQ=154;PV4=0.18,0.048,0.17,0.13 GT:PL:GQ 0/1:189,0,255:99 chr2 228973660 . A G 50 . DP=35;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,11,1,21;MQ=60;FQ=53;PV4=1,2.1e-15,1,1 GT:PL:GQ 0/1:80,0,166:83 chr2 229890660 . A G 180 . DP=91;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,20,20,26;MQ=60;FQ=183;PV4=0.52,2.8e-29,1,1 GT:PL:GQ 0/1:210,0,255:99 chr2 230092723 . G A 127 . DP=36;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,5,19,4;MQ=59;FQ=130;PV4=0.23,9e-13,1,1 GT:PL:GQ 0/1:157,0,230:99 chr2 230092889 . C T 115 . DP=63;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,25,6,19;MQ=60;FQ=118;PV4=0.77,7.6e-16,1,1 GT:PL:GQ 0/1:145,0,255:99 chr2 230096837 . C T 73 . DP=14;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,5,1,6;MQ=59;FQ=72.5;PV4=1,0.16,0.19,0.14 GT:PL:GQ 0/1:103,0,102:99 chr2 230135527 . C T 27 . DP=4;VDB=0.0082;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:59,9,0:16 chr2 230135711 . GC GCC 204 . INDEL;DP=11;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,2,8;MQ=60;FQ=-64.5 GT:PL:GQ 1/1:245,30,0:57 chr2 230231889 . A T 180 . DP=22;VDB=0.0373;AF1=0.5;AC1=1;DP4=2,6,2,12;MQ=59;FQ=139;PV4=0.6,0.21,0.23,0.047 GT:PL:GQ 0/1:210,0,166:99 chr2 230453214 . GAAAAAAAAAA GAAAAAAAAAAA,GAAAAAAAAAAAA 33.5 . INDEL;DP=37;VDB=0.0398;AF1=1;AC1=2;DP4=1,2,9,17;MQ=59;FQ=-78.5;PV4=1,1,0.37,0.16 GT:PL:GQ 1/1:74,44,0,66,40,63:74 chr2 230655733 . C T 76 . DP=13;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:109,36,0:69 chr2 230663576 . C T 143 . DP=79;VDB=0.0398;AF1=0.5;AC1=1;DP4=30,11,25,9;MQ=60;FQ=146;PV4=1,1.5e-18,1,0.43 GT:PL:GQ 0/1:173,0,255:99 chr2 230668858 . T C 225 . DP=77;VDB=0.0398;AF1=0.5;AC1=1;DP4=17,22,16,20;MQ=59;FQ=225;PV4=1,0.024,0.07,0.093 GT:PL:GQ 0/1:255,0,255:99 chr2 230668968 . G A 141 . DP=24;VDB=0.0392;AF1=0.5;AC1=1;DP4=0,11,1,11;MQ=59;FQ=136;PV4=1,2.8e-05,0.18,1 GT:PL:GQ 0/1:171,0,164:99 chr2 230668982 . T G 48 . DP=20;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,8,0,11;MQ=59;FQ=51;PV4=1,4.5e-10,0.2,1 GT:PL:GQ 0/1:78,0,142:81 chr2 230723777 . G C 142 . DP=43;VDB=0.0359;AF1=0.5;AC1=1;DP4=11,10,8,11;MQ=60;FQ=145;PV4=0.54,6.7e-10,1,0.02 GT:PL:GQ 0/1:172,0,255:99 chr2 230744794 . A G 4.77 . DP=14;VDB=0.0129;AF1=0.4999;AC1=1;DP4=4,8,1,1;MQ=60;FQ=6.99;PV4=1,0.39,1,0.26 GT:PL:GQ 0/1:33,0,255:33 chr2 230841074 . C T 225 . DP=51;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,16,10,7;MQ=60;FQ=225;PV4=0.77,1,0.083,1 GT:PL:GQ 0/1:255,0,255:99 chr2 230911292 . C A 225 . DP=102;VDB=0.0400;AF1=0.5;AC1=1;DP4=27,33,21,18;MQ=60;FQ=225;PV4=0.42,0.15,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 231036860 . C T 133 . DP=56;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,16,14,16;MQ=60;FQ=136;PV4=0.25,4e-21,1,1 GT:PL:GQ 0/1:163,0,255:99 chr2 231037616 . A G 225 . DP=51;VDB=0.0298;AF1=0.5;AC1=1;DP4=14,15,10,11;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 231042276 . A G 225 . DP=181;VDB=0.0380;AF1=0.5;AC1=1;DP4=51,34,44,47;MQ=60;FQ=225;PV4=0.13,0.15,1,0.41 GT:PL:GQ 0/1:255,0,255:99 chr2 231050569 . G A 80.5 . DP=4;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:113,12,0:21 chr2 231050715 . A G 222 . DP=140;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,76,58;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 231072709 . C T 184 . DP=61;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,45;MQ=60;FQ=-205 GT:PL:GQ 1/1:217,178,0:99 chr2 231076289 . T G 131 . DP=69;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,28,37;MQ=60;FQ=-223 GT:PL:GQ 1/1:164,196,0:99 chr2 231077112 . G A 205 . DP=50;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,8,18,3;MQ=60;FQ=208;PV4=0.3,0.11,1,1 GT:PL:GQ 0/1:235,0,255:99 chr2 231077154 . G A 87 . DP=62;VDB=0.0399;AF1=0.5;AC1=1;DP4=20,16,15,8;MQ=59;FQ=90;PV4=0.59,6.5e-28,0.38,1 GT:PL:GQ 0/1:117,0,255:99 chr2 231077725 . A G 222 . DP=27;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,8,18;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr2 231103185 . A G 181 . DP=19;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,19;MQ=59;FQ=-84 GT:PL:GQ 1/1:214,57,0:99 chr2 231106244 . G C 180 . DP=44;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,6,38;MQ=60;FQ=-159 GT:PL:GQ 1/1:213,132,0:99 chr2 231118186 . G A 222 . DP=52;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,24,26;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr2 231149108 . G A 89 . DP=14;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,4;MQ=60;FQ=-57 GT:PL:GQ 1/1:122,30,0:57 chr2 231155413 . T A 206 . DP=112;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,13,93;MQ=60;FQ=-282 GT:PL:GQ 1/1:239,255,0:99 chr2 231157271 . T C 179 . DP=31;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,25,4;MQ=60;FQ=-114 GT:PL:GQ 1/1:212,87,0:99 chr2 231253434 . T G 114 . DP=27;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,6,7,9;MQ=60;FQ=117;PV4=1,7.5e-10,1,1 GT:PL:GQ 0/1:144,0,221:99 chr2 231256755 . C T 225 . DP=56;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,9,19,10;MQ=59;FQ=225;PV4=1,0.18,0.47,0.22 GT:PL:GQ 0/1:255,0,255:99 chr2 231258150 . C T 103 . DP=28;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,7,7,9;MQ=59;FQ=106;PV4=1,1.8e-12,1,0.48 GT:PL:GQ 0/1:133,0,238:99 chr2 231738168 . G A 164 . DP=47;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,28,11;MQ=59;FQ=-144 GT:PL:GQ 1/1:197,117,0:99 chr2 231738263 . C T 180 . DP=52;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,21,29;MQ=60;FQ=-178 GT:PL:GQ 1/1:213,151,0:99 chr2 231738269 . G A 222 . DP=52;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,19,29;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr2 231738318 . T C 222 . DP=45;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,7,35;MQ=59;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr2 231740276 . A G 63 . DP=3;VDB=0.0170;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:95,9,0:16 chr2 231742138 . G A 140 . DP=22;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,6,6,3;MQ=60;FQ=143;PV4=0.67,0.32,1,1 GT:PL:GQ 0/1:170,0,245:99 chr2 231742864 . G A 16.1 . DP=9;VDB=0.0180;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=60;FQ=19.1;PV4=1,4.2e-05,1,0.049 GT:PL:GQ 0/1:46,0,115:49 chr2 231774844 . G A 225 . DP=77;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,11,28,10;MQ=60;FQ=225;PV4=0.8,0.062,1,0.11 GT:PL:GQ 0/1:255,0,255:99 chr2 231775144 . G A 225 . DP=74;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,26,9,20;MQ=59;FQ=225;PV4=0.8,0.16,1,0.32 GT:PL:GQ 0/1:255,0,255:99 chr2 231775297 . T G 181 . DP=79;VDB=0.0345;AF1=0.5;AC1=1;DP4=28,10,27,13;MQ=59;FQ=184;PV4=0.62,1.8e-15,1,1 GT:PL:GQ 0/1:211,0,255:99 chr2 231860838 . C T 16.9 . DP=2;VDB=0.0182;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:48,6,0:10 chr2 231860848 . A G 10.2 . DP=4;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:41,6,0:8 chr2 231861044 . C T 99 . DP=97;VDB=0.0298;AF1=0.5;AC1=1;DP4=31,25,35,5;MQ=54;FQ=102;PV4=0.00081,7.9e-21,8.5e-07,1 GT:PL:GQ 0/1:129,0,255:99 chr2 231864289 . A C 13.2 . DP=6;VDB=0.0089;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=56;FQ=16.1;PV4=1,0.0001,1,1 GT:PL:GQ 0/1:43,0,73:46 chr2 231864529 . A G 113 . DP=48;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,13,12,14;MQ=59;FQ=116;PV4=0.55,6.4e-21,1,1 GT:PL:GQ 0/1:143,0,255:99 chr2 231864600 . T C 188 . DP=34;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,14,2,12;MQ=60;FQ=191;PV4=0.67,1,1,1 GT:PL:GQ 0/1:218,0,255:99 chr2 231864646 . A G 13.2 . DP=13;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,7,0,5;MQ=60;FQ=16.1;PV4=1,1.1e-07,1,1 GT:PL:GQ 0/1:43,0,168:46 chr2 231865047 . T C 56 . DP=17;VDB=0.0004;AF1=0.5;AC1=1;DP4=10,0,5,0;MQ=60;FQ=59;PV4=1,0.37,1,0.22 GT:PL:GQ 0/1:86,0,145:89 chr2 231865090 . T C 114 . DP=49;VDB=0.0140;AF1=0.5;AC1=1;DP4=21,4,21,3;MQ=60;FQ=117;PV4=1,6.2e-12,0.16,0.15 GT:PL:GQ 0/1:144,0,255:99 chr2 231865263 . C T 225 . DP=73;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,24,9,25;MQ=60;FQ=225;PV4=0.45,1,1,0.39 GT:PL:GQ 0/1:255,0,255:99 chr2 231865269 . G T 112 . DP=65;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,23,8,21;MQ=60;FQ=115;PV4=0.6,9e-25,1,1 GT:PL:GQ 0/1:142,0,255:99 chr2 231921589 . G T 18.1 . DP=7;VDB=0.0180;AF1=0.5;AC1=1;DP4=3,2,1,1;MQ=60;FQ=21;PV4=1,1,1,0.033 GT:PL:GQ 0/1:48,0,129:51 chr2 231921660 . A T 4.13 . DP=7;VDB=0.0127;AF1=0.4998;AC1=1;DP4=2,3,1,1;MQ=60;FQ=6.2;PV4=1,0.044,1,1 GT:PL:GQ 0/1:32,0,130:31 chr2 232003763 . A C 12.3 . DP=15;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,8,0,5;MQ=60;FQ=15.1;PV4=1,3.2e-10,1,1 GT:PL:GQ 0/1:42,0,181:44 chr2 232196472 . T A 222 . DP=32;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,24,6;MQ=59;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr2 232196564 . C T 222 . DP=68;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,43,22;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr2 232196597 . G A 222 . DP=69;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,32,33;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr2 232225535 . CGGG CGGGG 204 . INDEL;DP=15;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,12;MQ=58;FQ=-79.5 GT:PL:GQ 1/1:245,45,0:87 chr2 232236068 . G A 43 . DP=13;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,1,6,0;MQ=60;FQ=46;PV4=1,0.0018,1,1 GT:PL:GQ 0/1:73,0,150:76 chr2 232263127 . G A 225 . DP=93;VDB=0.0392;AF1=0.5;AC1=1;DP4=32,12,24,18;MQ=59;FQ=225;PV4=0.18,1,0.073,1 GT:PL:GQ 0/1:255,0,255:99 chr2 232326801 . A T 222 . DP=76;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,15,59;MQ=60;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr2 232458443 . T C 170 . DP=62;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,28,31;MQ=60;FQ=-205 GT:PL:GQ 1/1:203,178,0:99 chr2 232790053 . C T 13 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr2 232888856 . T G 7.59 . DP=2;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr2 232952286 . A G 176 . DP=107;VDB=0.0380;AF1=0.5;AC1=1;DP4=42,10,37,14;MQ=60;FQ=179;PV4=0.36,3.4e-26,1,1 GT:PL:GQ 0/1:206,0,255:99 chr2 233028070 . A G 23 . DP=9;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,0,4,0;MQ=60;FQ=26;PV4=1,0.00086,1,1 GT:PL:GQ 0/1:53,0,106:56 chr2 233199246 . G A 119 . DP=53;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,22,3,19;MQ=47;FQ=122;PV4=0.48,3.5e-07,0.14,1 GT:PL:GQ 0/1:149,0,255:99 chr2 233201328 . A G 106 . DP=20;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,5,4,7;MQ=60;FQ=109;PV4=1,1e-06,1,1 GT:PL:GQ 0/1:136,0,202:99 chr2 233204359 . A G 88 . DP=22;VDB=0.0190;AF1=0.5;AC1=1;DP4=8,7,2,5;MQ=60;FQ=91;PV4=0.38,0.0062,1,1 GT:PL:GQ 0/1:118,0,255:99 chr2 233205600 . A G 210 . DP=34;VDB=0.0398;AF1=0.5;AC1=1;DP4=10,9,9,6;MQ=60;FQ=213;PV4=0.74,0.041,1,0.027 GT:PL:GQ 0/1:240,0,255:99 chr2 233243660 . T C 157 . DP=22;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,13,8;MQ=45;FQ=-90 GT:PL:GQ 1/1:190,63,0:99 chr2 233243981 . A T 163 . DP=67;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,20,13,19;MQ=59;FQ=166;PV4=1,7.8e-20,0.4,0.078 GT:PL:GQ 0/1:193,0,255:99 chr2 233244586 . C G 105 . DP=11;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,3,7;MQ=58;FQ=-57 GT:PL:GQ 1/1:138,30,0:57 chr2 233245090 . A G 37 . DP=22;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,9,3,4;MQ=55;FQ=40;PV4=1,3e-09,0.14,0.47 GT:PL:GQ 0/1:67,0,255:70 chr2 233245141 . T C 106 . DP=32;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,6,9,3;MQ=48;FQ=109;PV4=1,1,1.5e-06,0.27 GT:PL:GQ 0/1:136,0,255:99 chr2 233245958 . C A 20 . DP=12;VDB=0.0236;AF1=0.5;AC1=1;DP4=7,1,2,2;MQ=29;FQ=23;PV4=0.24,1.1e-05,1,1 GT:PL:GQ 0/1:50,0,124:53 chr2 233271697 . TACACACACACACACACACA TACACACACACACACACACACA 142 . INDEL;DP=10;VDB=0.0393;AF1=0.5;AC1=1;DP4=2,1,2,2;MQ=60;FQ=56.5;PV4=1,1,1,1 GT:PL:GQ 0/1:180,0,91:94 chr2 233272528 . G T 225 . DP=76;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,20,18,13;MQ=56;FQ=225;PV4=0.64,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 233273244 . C A 81 . DP=27;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,6,5,4;MQ=51;FQ=84;PV4=0.69,1.5e-06,0.061,1 GT:PL:GQ 0/1:111,0,255:99 chr2 233274145 . G C 89 . DP=23;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,19,1;MQ=33;FQ=-87 GT:PL:GQ 1/1:122,60,0:99 chr2 233310297 . T C 96.1 . DP=8;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,4,3;MQ=24;FQ=-48 GT:PL:GQ 1/1:129,21,0:39 chr2 233310369 . T C 79.3 . DP=5;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,2;MQ=28;FQ=-42 GT:PL:GQ 1/1:112,15,0:27 chr2 233310423 . C T 68.5 . DP=5;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,1,3;MQ=36;FQ=-39 GT:PL:GQ 1/1:101,12,0:21 chr2 233310491 . C T 25 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,0,3;MQ=33;FQ=-36 GT:PL:GQ 1/1:57,9,0:15 chr2 233321641 . C T 225 . DP=63;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,19,18,17;MQ=60;FQ=225;PV4=0.069,0.23,0.2,1 GT:PL:GQ 0/1:255,0,255:99 chr2 233321836 . G A 167 . DP=44;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,10,7,15;MQ=59;FQ=170;PV4=0.35,3.7e-11,1,1 GT:PL:GQ 0/1:197,0,255:99 chr2 233322424 . T C 193 . DP=44;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,17,11,6;MQ=59;FQ=196;PV4=0.031,0.37,0.08,0.095 GT:PL:GQ 0/1:223,0,255:99 chr2 233322958 . T C 225 . DP=85;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,25,14,26;MQ=59;FQ=225;PV4=0.46,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 233323177 . T C 19.1 . DP=6;VDB=0.0398;AF1=0.5064;AC1=1;DP4=0,1,1,3;MQ=60;FQ=-11.3;PV4=1,0.0063,1,1 GT:PL:GQ 0/1:49,0,16:19 chr2 233323205 . C T 84 . DP=7;VDB=0.0076;AF1=0.5;AC1=1;DP4=1,1,1,3;MQ=60;FQ=30;PV4=1,0.45,1,0.12 GT:PL:GQ 0/1:114,0,57:60 chr2 233344991 . T G 69 . DP=55;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,19,12,9;MQ=60;FQ=72;PV4=0.27,2.8e-19,1,1 GT:PL:GQ 0/1:99,0,255:99 chr2 233345249 . C A 41 . DP=16;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,10,1,5;MQ=59;FQ=44;PV4=0.37,1.4e-06,0.1,1 GT:PL:GQ 0/1:71,0,165:74 chr2 233345474 . C A 161 . DP=59;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,11,17,11;MQ=60;FQ=164;PV4=1,1.7e-17,0.15,0.49 GT:PL:GQ 0/1:191,0,255:99 chr2 233345861 . G A 219 . DP=66;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,24,6,15;MQ=60;FQ=221;PV4=0.28,1,1,1 GT:PL:GQ 0/1:249,0,255:99 chr2 233346455 . C G 50 . DP=35;VDB=0.0190;AF1=0.5;AC1=1;DP4=9,7,13,3;MQ=59;FQ=53;PV4=0.25,1e-09,1,1 GT:PL:GQ 0/1:80,0,255:83 chr2 233346662 . A C 52.1 . DP=6;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:85,18,0:33 chr2 233348647 . G A 109 . DP=27;VDB=0.0244;AF1=0.5;AC1=1;DP4=10,3,10,3;MQ=60;FQ=112;PV4=1,3.3e-11,1,1 GT:PL:GQ 0/1:139,0,236:99 chr2 233349588 . G A 222 . DP=109;VDB=0.0399;AF1=1;AC1=2;DP4=0,1,54,46;MQ=60;FQ=-282;PV4=0.47,0.15,0.46,1 GT:PL:GQ 1/1:255,255,0:99 chr2 233350000 . C G 100 . DP=8;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,2,0,6;MQ=60;FQ=25;PV4=1,0.13,1,1 GT:PL:GQ 0/1:130,0,52:55 chr2 233350548 . G A 78 . DP=11;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,3,2,2;MQ=60;FQ=81;PV4=1,1,1,1 GT:PL:GQ 0/1:108,0,130:99 chr2 233385202 . C T 43 . DP=20;VDB=0.0003;AF1=0.5;AC1=1;DP4=10,3,4,3;MQ=60;FQ=46;PV4=0.61,1.4e-05,1,0.24 GT:PL:GQ 0/1:73,0,226:76 chr2 233385396 . G A 222 . DP=22;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,4,16;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr2 233386229 . T C 140 . DP=31;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,26;MQ=60;FQ=-120 GT:PL:GQ 1/1:173,93,0:99 chr2 233386583 . T C 141 . DP=58;VDB=0.0359;AF1=0.5;AC1=1;DP4=20,12,7,12;MQ=60;FQ=144;PV4=0.091,0.00024,1,1 GT:PL:GQ 0/1:171,0,255:99 chr2 233387635 . A G 146 . DP=17;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,10,6;MQ=59;FQ=-75 GT:PL:GQ 1/1:179,48,0:93 chr2 233388311 . C T 9.52 . DP=9;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,3,0,4;MQ=60;FQ=12.3;PV4=1,0.00031,1,0.4 GT:PL:GQ 0/1:39,0,105:41 chr2 233388813 . T G 209 . DP=11;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,6,4;MQ=60;FQ=-57 GT:PL:GQ 1/1:242,30,0:57 chr2 233389918 . A G 222 . DP=18;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,9;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr2 233390937 . A G 136 . DP=13;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,3,8;MQ=60;FQ=-60 GT:PL:GQ 1/1:169,33,0:63 chr2 233391463 . A G 77 . DP=19;VDB=0.0099;AF1=0.5;AC1=1;DP4=2,6,1,9;MQ=59;FQ=80;PV4=0.56,0.0048,1,1 GT:PL:GQ 0/1:107,0,154:99 chr2 233391965 . A G 21 . DP=7;VDB=0.0218;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=24;PV4=1,0.00011,1,0.27 GT:PL:GQ 0/1:51,0,79:54 chr2 233392020 . aa aAAAGa 217 . INDEL;DP=31;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,5,9,6;MQ=58;FQ=217;PV4=1,0.39,0.092,0.37 GT:PL:GQ 0/1:255,0,255:99 chr2 233400074 . A G 28 . DP=15;VDB=0.0053;AF1=0.5;AC1=1;DP4=2,7,0,6;MQ=60;FQ=31;PV4=0.49,1.5e-07,1,1 GT:PL:GQ 0/1:58,0,194:61 chr2 233404294 . C G 10.4 . DP=6;VDB=0.0170;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=56;FQ=13.2;PV4=1,0.0011,0.19,1 GT:PL:GQ 0/1:40,0,81:42 chr2 233404334 . cgggctggctgggctggctggg cGGGCTGGCTgggctggctgggctggctggg 47.5 . INDEL;DP=11;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,0,2,2;MQ=51;FQ=50.5;PV4=0.43,0.39,0.012,0.4 GT:PL:GQ 0/1:85,0,149:88 chr2 233407120 . C T 161 . DP=50;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,5,17,10;MQ=60;FQ=164;PV4=0.36,1.4e-18,1,1 GT:PL:GQ 0/1:191,0,255:99 chr2 233408190 . ACCCCCCCC ACCCCCCCCC 5.8 . INDEL;DP=40;VDB=0.0392;AF1=0.5005;AC1=1;DP4=8,2,8,4;MQ=55;FQ=-8.35;PV4=0.65,1,0.0096,1 GT:PL:GQ 0/1:42,0,27:32 chr2 233408220 . AGGGGGGG AGGGGGG 61.5 . INDEL;DP=48;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,30,9;MQ=57;FQ=-152 GT:PL:GQ 1/1:102,117,0:99 chr2 233408239 . C G 220 . DP=80;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,57,20;MQ=57;FQ=-259 GT:PL:GQ 1/1:253,232,0:99 chr2 233408283 . C T 130 . DP=122;VDB=0.0140;AF1=0.5;AC1=1;DP4=37,20,49,15;MQ=58;FQ=133;PV4=0.17,6.3e-33,0.012,1 GT:PL:GQ 0/1:160,0,255:99 chr2 233408386 . T C 95 . DP=122;VDB=0.0399;AF1=0.5;AC1=1;DP4=23,53,14,30;MQ=58;FQ=98;PV4=1,9.4e-35,1,1 GT:PL:GQ 0/1:125,0,255:99 chr2 233409013 . G A 45 . DP=8;VDB=0.0080;AF1=0.5;AC1=1;DP4=5,0,3,0;MQ=60;FQ=48;PV4=1,1,1,1 GT:PL:GQ 0/1:75,0,113:78 chr2 233415978 . T C 184 . DP=71;VDB=0.0400;AF1=0.5;AC1=1;DP4=19,15,21,16;MQ=60;FQ=187;PV4=1,8.4e-19,1,1 GT:PL:GQ 0/1:214,0,255:99 chr2 233421284 . CTTTT CTTT 173 . INDEL;DP=147;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,53,20,48;MQ=60;FQ=175;PV4=0.71,0.0082,1,0.0045 GT:PL:GQ 0/1:211,0,214:99 chr2 233438786 . G A 4.13 . DP=14;VDB=0.0011;AF1=0.4998;AC1=1;DP4=9,0,5,0;MQ=60;FQ=6.2;PV4=1,5.2e-12,1,1 GT:PL:GQ 0/1:32,0,159:31 chr2 233445631 . G T 19.1 . DP=11;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,3,1,1;MQ=60;FQ=22;PV4=1,1,1,1 GT:PL:GQ 0/1:49,0,211:52 chr2 233470843 . G A 222 . DP=45;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,27,16;MQ=60;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr2 233470900 . tcccc tccc 214 . INDEL;DP=52;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,22,28;MQ=60;FQ=-186 GT:PL:GQ 1/1:255,151,0:99 chr2 233470931 . C G 221 . DP=39;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,12,26;MQ=59;FQ=-141 GT:PL:GQ 1/1:254,114,0:99 chr2 233599904 . A C 111 . DP=57;VDB=0.0393;AF1=0.5;AC1=1;DP4=19,6,17,10;MQ=60;FQ=114;PV4=0.38,7.2e-18,1,1 GT:PL:GQ 0/1:141,0,255:99 chr2 233630676 . C T 64 . DP=52;VDB=0.0345;AF1=0.5;AC1=1;DP4=20,7,18,6;MQ=60;FQ=67;PV4=1,1.1e-27,0.15,0.45 GT:PL:GQ 0/1:94,0,255:97 chr2 233633460 . G A 149 . DP=31;VDB=0.0164;AF1=0.5;AC1=1;DP4=5,14,1,11;MQ=59;FQ=152;PV4=0.36,0.35,1,0.15 GT:PL:GQ 0/1:179,0,255:99 chr2 233641083 . G C 97 . DP=51;VDB=0.0164;AF1=0.5;AC1=1;DP4=17,6,23,3;MQ=60;FQ=100;PV4=0.27,8.1e-23,1,1 GT:PL:GQ 0/1:127,0,255:99 chr2 233681512 . T G 44 . DP=15;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,0,11,0;MQ=60;FQ=44.9;PV4=1,6.7e-09,1,0.49 GT:PL:GQ 0/1:74,0,76:75 chr2 233708806 . A G 123 . DP=47;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,5,15,3;MQ=59;FQ=126;PV4=0.69,4.9e-07,0.16,1 GT:PL:GQ 0/1:153,0,255:99 chr2 233712049 . G A 102 . DP=16;VDB=0.0373;AF1=0.5;AC1=1;DP4=5,3,6,1;MQ=57;FQ=105;PV4=0.57,0.21,0.46,1 GT:PL:GQ 0/1:132,0,177:99 chr2 233721455 . G A 225 . DP=56;VDB=0.0271;AF1=0.5;AC1=1;DP4=16,14,19,5;MQ=59;FQ=225;PV4=0.084,1,0.22,1 GT:PL:GQ 0/1:255,0,255:99 chr2 233723182 . G A 127 . DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,7;MQ=60;FQ=-69 GT:PL:GQ 1/1:160,42,0:81 chr2 233740227 . A G 62 . DP=51;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,24,4,15;MQ=60;FQ=65;PV4=1,7.7e-18,1,1 GT:PL:GQ 0/1:92,0,255:95 chr2 233752944 . acacgcacgcacgcac acacgcacgcac 217 . INDEL;DP=43;VDB=0.0099;AF1=0.5;AC1=1;DP4=5,12,1,10;MQ=60;FQ=217;PV4=0.35,1.1e-06,1,0.037 GT:PL:GQ 0/1:255,0,255:99 chr2 233757679 . G A 153 . DP=55;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,13,16,10;MQ=59;FQ=156;PV4=0.59,6.3e-13,0.48,1 GT:PL:GQ 0/1:183,0,255:99 chr2 233757697 . A G 222 . DP=57;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,29;MQ=59;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr2 233759695 . G C 140 . DP=30;VDB=0.0053;AF1=0.5;AC1=1;DP4=2,15,1,11;MQ=58;FQ=143;PV4=1,0.23,0.043,1 GT:PL:GQ 0/1:170,0,230:99 chr2 233785015 . G A 80 . DP=9;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,8,1;MQ=58;FQ=-54 GT:PL:GQ 1/1:113,27,0:51 chr2 233791608 . C G 67 . DP=12;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:100,36,0:69 chr2 233791648 . G T 183 . DP=20;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,15,5;MQ=60;FQ=-87 GT:PL:GQ 1/1:216,60,0:99 chr2 233834975 . A G 178 . DP=20;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,19,0;MQ=59;FQ=-84 GT:PL:GQ 1/1:211,57,0:99 chr2 233880271 . A G 205 . DP=38;VDB=0.0066;AF1=0.5;AC1=1;DP4=18,3,12,4;MQ=60;FQ=208;PV4=0.44,0.12,1,0.075 GT:PL:GQ 0/1:235,0,255:99 chr2 233899126 . C A 193 . DP=139;VDB=0.0365;AF1=0.5;AC1=1;DP4=37,30,41,27;MQ=60;FQ=196;PV4=0.6,3.4e-22,1,1 GT:PL:GQ 0/1:223,0,255:99 chr2 233925166 . G A 44 . DP=7;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,0,2,2;MQ=60;FQ=24;PV4=0.47,0.011,1,0.18 GT:PL:GQ 0/1:74,0,51:54 chr2 233925406 . T G 121 . DP=18;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,6,3,9;MQ=60;FQ=81;PV4=0.51,2.5e-07,1,1 GT:PL:GQ 0/1:151,0,108:99 chr2 233990412 . C T 215 . DP=38;VDB=0.0190;AF1=0.5;AC1=1;DP4=14,3,15,4;MQ=60;FQ=212;PV4=1,0.066,1,0.37 GT:PL:GQ 0/1:245,0,240:99 chr2 233998646 . C T 119 . DP=10;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,1,6,1;MQ=60;FQ=53;PV4=1,0.13,1,0.13 GT:PL:GQ 0/1:149,0,80:83 chr2 234054515 . G A 145 . DP=26;VDB=0.0271;AF1=0.5;AC1=1;DP4=12,2,8,3;MQ=60;FQ=148;PV4=0.62,0.32,1,0.34 GT:PL:GQ 0/1:175,0,211:99 chr2 234054873 . G A 225 . DP=210;VDB=0.0380;AF1=0.5;AC1=1;DP4=52,50,52,52;MQ=60;FQ=225;PV4=0.89,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 234054989 . T G 118 . DP=87;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,38,4,32;MQ=60;FQ=121;PV4=0.38,2.9e-17,1,1 GT:PL:GQ 0/1:148,0,255:99 chr2 234055004 . T C 87 . DP=78;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,38,3,27;MQ=60;FQ=90;PV4=0.51,1.9e-16,1,1 GT:PL:GQ 0/1:117,0,255:99 chr2 234066969 . C G 225 . DP=100;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,25,33,18;MQ=60;FQ=225;PV4=0.064,0.46,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 234067089 . A G 98 . DP=50;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,17,5,21;MQ=59;FQ=101;PV4=0.51,1.7e-15,1,1 GT:PL:GQ 0/1:128,0,255:99 chr2 234070233 . T C 40 . DP=20;VDB=0.0099;AF1=0.5;AC1=1;DP4=8,2,8,1;MQ=60;FQ=43;PV4=1,1.3e-08,1,1 GT:PL:GQ 0/1:70,0,190:73 chr2 234072626 . T C 41.8 . DP=2;VDB=0.0169;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:73,6,0:10 chr2 234078056 . AC A 145 . INDEL;DP=47;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,16,5,7;MQ=60;FQ=148;PV4=0.74,1.4e-12,1,1 GT:PL:GQ 0/1:183,0,255:99 chr2 234078140 . C T 20 . DP=13;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,7,1,4;MQ=60;FQ=23;PV4=1,8e-07,1,1 GT:PL:GQ 0/1:50,0,173:53 chr2 234078582 . G A 164 . DP=26;VDB=0.0384;AF1=0.5;AC1=1;DP4=8,2,12,2;MQ=60;FQ=148;PV4=1,0.44,0.21,0.19 GT:PL:GQ 0/1:194,0,175:99 chr2 234091158 . T C 222 . DP=83;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,35,44;MQ=59;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr2 234104029 . G A 225 . DP=73;VDB=0.0399;AF1=0.5;AC1=1;DP4=23,19,13,15;MQ=59;FQ=225;PV4=0.63,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 234107070 . G A 113 . DP=26;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,14,0,12;MQ=60;FQ=116;PV4=1,0.19,1,0.36 GT:PL:GQ 0/1:143,0,164:99 chr2 234112649 . T C 59 . DP=5;VDB=0.0060;AF1=0.5;AC1=1;DP4=1,1,3,0;MQ=60;FQ=18.1;PV4=0.4,1,1,1 GT:PL:GQ 0/1:89,0,45:48 chr2 234181593 . G C 225 . DP=129;VDB=0.0380;AF1=0.5;AC1=1;DP4=35,35,18,39;MQ=60;FQ=225;PV4=0.047,0.23,1,0.49 GT:PL:GQ 0/1:255,0,255:99 chr2 234184417 . G A 175 . DP=74;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,12,21,17;MQ=60;FQ=178;PV4=0.63,1.9e-15,1,0.38 GT:PL:GQ 0/1:205,0,255:99 chr2 234224643 . G C 5.46 . DP=12;VDB=0.0003;AF1=0.4999;AC1=1;DP4=6,1,4,0;MQ=60;FQ=7.8;PV4=1,2.2e-06,1,0.052 GT:PL:GQ 0/1:34,0,165:34 chr2 234227523 . A G 225 . DP=108;VDB=0.0380;AF1=0.5;AC1=1;DP4=23,33,23,29;MQ=60;FQ=225;PV4=0.85,0.14,1,0.16 GT:PL:GQ 0/1:255,0,255:99 chr2 234229480 . C T 85 . DP=36;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,15,4,15;MQ=59;FQ=88;PV4=0.35,1.1e-18,0.18,1 GT:PL:GQ 0/1:115,0,202:99 chr2 234238254 . T G 225 . DP=30;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,7,6,8;MQ=60;FQ=225;PV4=0.72,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 234294561 . TT TTCT 214 . INDEL;DP=84;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,36,43;MQ=58;FQ=-273 GT:PL:GQ 1/1:255,238,0:99 chr2 234375944 . C T 9.31 . DP=2;VDB=0.0173;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr2 234436069 . C T 13.2 . DP=7;VDB=0.0204;AF1=0.5;AC1=1;DP4=4,0,3,0;MQ=60;FQ=16.1;PV4=1,0.00024,1,0.14 GT:PL:GQ 0/1:43,0,103:46 chr2 234438246 . ct cTt 214 . INDEL;DP=47;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,39;MQ=60;FQ=-173 GT:PL:GQ 1/1:255,138,0:99 chr2 234449316 . G A 222 . DP=73;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,33,38;MQ=60;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr2 234449462 . T C 96 . DP=12;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,10;MQ=58;FQ=-60 GT:PL:GQ 1/1:129,33,0:63 chr2 234457900 . T A 23.5 . DP=4;VDB=0.0082;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:56,12,0:21 chr2 234469664 . T C 222 . DP=15;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,12,3;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr2 234526871 . C G 117 . DP=19;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,17,1;MQ=58;FQ=-81 GT:PL:GQ 1/1:150,54,0:99 chr2 234580678 . T C 60 . DP=10;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,5,0,4;MQ=60;FQ=63;PV4=1,1,1,1 GT:PL:GQ 0/1:90,0,141:93 chr2 234590527 . T G 125 . DP=25;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,4,11,4;MQ=60;FQ=128;PV4=0.67,2.5e-06,1,0.44 GT:PL:GQ 0/1:155,0,197:99 chr2 234590616 . C A 98 . DP=35;VDB=0.0359;AF1=0.5;AC1=1;DP4=9,10,5,11;MQ=60;FQ=101;PV4=0.49,2.3e-17,1,0.27 GT:PL:GQ 0/1:128,0,255:99 chr2 234590970 . T G 129 . DP=21;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,2,19;MQ=49;FQ=-90 GT:PL:GQ 1/1:162,63,0:99 chr2 234591205 . T C 225 . DP=122;VDB=0.0365;AF1=0.5;AC1=1;DP4=33,17,34,37;MQ=58;FQ=225;PV4=0.063,1,0.012,0.082 GT:PL:GQ 0/1:255,0,255:99 chr2 234591339 . G A 225 . DP=105;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,23,29,25;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 234598991 . T G 147 . DP=39;VDB=0.0066;AF1=0.5;AC1=1;DP4=11,4,19,5;MQ=60;FQ=150;PV4=0.71,9.9e-21,1,0.081 GT:PL:GQ 0/1:177,0,243:99 chr2 234599089 . C G 225 . DP=153;VDB=0.0392;AF1=0.5;AC1=1;DP4=36,23,52,37;MQ=60;FQ=225;PV4=0.86,0.22,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 234599296 . T C 21 . DP=13;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,5,0,6;MQ=60;FQ=24;PV4=1,0.00014,1,1 GT:PL:GQ 0/1:51,0,132:54 chr2 234601669 . T G 204 . DP=33;VDB=0.0066;AF1=0.5;AC1=1;DP4=13,4,11,4;MQ=59;FQ=207;PV4=1,1,0.15,1 GT:PL:GQ 0/1:234,0,255:99 chr2 234601965 . A G 141 . DP=82;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,32,12,18;MQ=59;FQ=144;PV4=0.64,9.6e-25,0.36,1 GT:PL:GQ 0/1:171,0,255:99 chr2 234602191 . A G 225 . DP=58;VDB=0.0400;AF1=0.5;AC1=1;DP4=20,14,10,12;MQ=60;FQ=225;PV4=0.41,0.4,1,0.49 GT:PL:GQ 0/1:255,0,255:99 chr2 234602202 . A C 109 . DP=58;VDB=0.0271;AF1=0.5;AC1=1;DP4=19,15,11,10;MQ=60;FQ=112;PV4=1,5.4e-22,1,1 GT:PL:GQ 0/1:139,0,255:99 chr2 234621780 . T C 141 . DP=35;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,8,10,7;MQ=60;FQ=144;PV4=0.73,9.7e-12,1,1 GT:PL:GQ 0/1:171,0,255:99 chr2 234621787 . C G 160 . DP=31;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,8,9,8;MQ=60;FQ=163;PV4=0.72,3.6e-08,1,1 GT:PL:GQ 0/1:190,0,246:99 chr2 234621825 . T C 118 . DP=37;VDB=0.0373;AF1=0.5;AC1=1;DP4=9,5,14,7;MQ=60;FQ=121;PV4=1,1.2e-15,1,1 GT:PL:GQ 0/1:148,0,244:99 chr2 234622061 . C A 87 . DP=37;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,5,11,4;MQ=59;FQ=90;PV4=1,3.4e-18,1,1 GT:PL:GQ 0/1:117,0,255:99 chr2 234622110 . C G 60 . DP=54;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,14,16,3;MQ=59;FQ=63;PV4=0.065,1.8e-19,0.25,0.32 GT:PL:GQ 0/1:90,0,255:93 chr2 234622282 . C T 76 . DP=13;VDB=0.0002;AF1=0.5;AC1=1;DP4=4,1,3,5;MQ=58;FQ=68.6;PV4=0.27,0.011,0.2,1 GT:PL:GQ 0/1:106,0,96:99 chr2 234626287 . G A 32 . DP=11;VDB=0.0081;AF1=0.5;AC1=1;DP4=5,1,5,0;MQ=60;FQ=35;PV4=1,5.9e-05,1,1 GT:PL:GQ 0/1:62,0,144:65 chr2 234627608 . T G 9.52 . DP=22;VDB=0.0373;AF1=0.5;AC1=1;DP4=11,5,5,0;MQ=59;FQ=12.3;PV4=0.28,0.0016,0.036,1 GT:PL:GQ 0/1:39,0,255:41 chr2 234627937 . T C 222 . DP=57;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,27,27;MQ=58;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr2 234637803 . T C 91 . DP=7;VDB=0.0400;AF1=0.5003;AC1=1;DP4=0,2,4,1;MQ=58;FQ=4.77;PV4=0.14,1,0.29,1 GT:PL:GQ 0/1:121,0,30:33 chr2 234637853 . G A 78 . DP=21;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,4,8,3;MQ=59;FQ=81;PV4=0.38,5.4e-07,0.2,0.36 GT:PL:GQ 0/1:108,0,183:99 chr2 234637912 . T C 155 . DP=39;VDB=0.0398;AF1=0.5;AC1=1;DP4=11,6,15,7;MQ=58;FQ=158;PV4=1,3.4e-10,0.46,0.38 GT:PL:GQ 0/1:185,0,255:99 chr2 234638249 . A G 148 . DP=100;VDB=0.0322;AF1=0.5;AC1=1;DP4=28,32,22,16;MQ=60;FQ=151;PV4=0.31,6e-23,0.037,1 GT:PL:GQ 0/1:178,0,255:99 chr2 234652347 . C G 100 . DP=58;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,12,19,6;MQ=60;FQ=103;PV4=0.4,1.5e-18,1,1 GT:PL:GQ 0/1:130,0,255:99 chr2 234663649 . C G 166 . DP=56;VDB=0.0190;AF1=0.5;AC1=1;DP4=8,19,9,18;MQ=58;FQ=169;PV4=1,4.3e-10,1,1 GT:PL:GQ 0/1:196,0,255:99 chr2 234678110 . cgtgtgtgtgtgtgtg cgtgtgtgtgtgtg 27.5 . INDEL;DP=26;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,4,2,1;MQ=60;FQ=30.5;PV4=1,7.7e-05,1,0.42 GT:PL:GQ 0/1:65,0,255:68 chr2 234688036 . C A 222 . DP=27;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,11,15;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr2 234702459 . T C 148 . DP=33;VDB=0.0384;AF1=0.5;AC1=1;DP4=2,11,4,14;MQ=59;FQ=151;PV4=1,1e-10,0.2,0.13 GT:PL:GQ 0/1:178,0,207:99 chr2 234703136 . T C 169 . DP=39;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,16,1,19;MQ=60;FQ=169;PV4=0.59,0.38,1,1 GT:PL:GQ 0/1:199,0,199:99 chr2 234704150 . T C 84 . DP=11;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:117,33,0:63 chr2 234704318 . A G 88 . DP=177;VDB=0.0380;AF1=0.5;AC1=1;DP4=45,49,42,36;MQ=59;FQ=91;PV4=0.45,6.4e-62,1,0.12 GT:PL:GQ 0/1:118,0,255:99 chr2 234704495 . T G 123 . DP=86;VDB=0.0400;AF1=0.5;AC1=1;DP4=24,24,18,16;MQ=60;FQ=126;PV4=0.83,6.3e-24,1,1 GT:PL:GQ 0/1:153,0,255:99 chr2 234704607 . C T 182 . DP=97;VDB=0.0398;AF1=0.5;AC1=1;DP4=24,25,19,26;MQ=59;FQ=185;PV4=0.54,2.6e-21,1,1 GT:PL:GQ 0/1:212,0,255:99 chr2 234704690 . T C 222 . DP=72;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,22,43;MQ=59;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr2 234704746 . G C 222 . DP=41;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,11,26;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr2 234707341 . T C 222 . DP=31;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,26,3;MQ=59;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr2 234708428 . G A 186 . DP=25;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,18,5;MQ=60;FQ=-96 GT:PL:GQ 1/1:219,69,0:99 chr2 234708570 . G A 222 . DP=30;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,19;MQ=59;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr2 234708629 . G A 222 . DP=21;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,2,19;MQ=59;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr2 234708720 . T G 99 . DP=9;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,2;MQ=60;FQ=-54 GT:PL:GQ 1/1:132,27,0:51 chr2 234713812 . G T 190 . DP=36;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,13,23;MQ=60;FQ=-135 GT:PL:GQ 1/1:223,108,0:99 chr2 234717669 . A G 89 . DP=17;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,17,0;MQ=60;FQ=-78 GT:PL:GQ 1/1:122,51,0:99 chr2 234720734 . A C 114 . DP=9;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:147,18,0:33 chr2 234725502 . T C 222 . DP=14;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,5,9;MQ=60;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr2 234727250 . T G 135 . DP=21;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,18,3;MQ=60;FQ=-90 GT:PL:GQ 1/1:168,63,0:99 chr2 234727478 . A G 13.2 . DP=8;VDB=0.0017;AF1=0.5;AC1=1;DP4=1,3,1,3;MQ=60;FQ=16.1;PV4=1,8.2e-05,1,0.33 GT:PL:GQ 0/1:43,0,112:46 chr2 234727986 . C T 222 . DP=48;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,24,23;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr2 234728078 . T C 179 . DP=34;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,13,21;MQ=60;FQ=-129 GT:PL:GQ 1/1:212,102,0:99 chr2 234728158 . C A 79 . DP=8;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,4,1,3;MQ=60;FQ=68.8;PV4=1,1,1,1 GT:PL:GQ 0/1:109,0,96:99 chr2 234732317 . A G 84 . DP=20;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,7,5,5;MQ=60;FQ=87;PV4=0.65,1.2e-08,1,1 GT:PL:GQ 0/1:114,0,204:99 chr2 234738472 . G A 55 . DP=21;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,5,0,14;MQ=60;FQ=58;PV4=0.1,1.5e-08,1,1 GT:PL:GQ 0/1:85,0,134:88 chr2 234740758 . A G 65 . DP=34;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,4,11,1;MQ=55;FQ=68;PV4=0.63,4.7e-07,0.00053,1 GT:PL:GQ 0/1:95,0,255:98 chr2 234740797 . C CAAAA 217 . INDEL;DP=58;VDB=0.0244;AF1=0.5;AC1=1;DP4=18,17,10,11;MQ=53;FQ=217;PV4=1,1,1.2e-09,0.33 GT:PL:GQ 0/1:255,0,255:99 chr2 234741022 . T C 176 . DP=18;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,5,3,9;MQ=59;FQ=73;PV4=0.51,0.089,0.27,0.38 GT:PL:GQ 0/1:206,0,100:99 chr2 234741028 . a aG 65.5 . INDEL;DP=11;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,3,2,6;MQ=60;FQ=28.5;PV4=1,0.00016,1,0.28 GT:PL:GQ 0/1:103,0,63:66 chr2 234750542 . G C 222 . DP=66;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,33,33;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr2 234750831 . T C 201 . DP=24;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,17;MQ=59;FQ=-99 GT:PL:GQ 1/1:234,72,0:99 chr2 234753008 . G A 82 . DP=10;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:115,30,0:57 chr2 234754506 . G A 219 . DP=70;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,28,40;MQ=60;FQ=-232 GT:PL:GQ 1/1:252,205,0:99 chr2 234756240 . G A 222 . DP=57;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,15,41;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr2 234761225 . C T 180 . DP=130;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,73,50;MQ=59;FQ=-282;PV4=1,1.2e-07,0.44,1 GT:PL:GQ 1/1:213,255,0:99 chr2 234761355 . G A 189 . DP=83;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,16,61;MQ=60;FQ=-259 GT:PL:GQ 1/1:222,232,0:99 chr2 234762480 . A T 222 . DP=35;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,19;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr2 234763226 . C T 185 . DP=49;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,14,31;MQ=60;FQ=-162 GT:PL:GQ 1/1:218,135,0:99 chr2 234846198 . G A 28.3 . DP=5;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:61,15,0:27 chr2 234888643 . T C 104 . DP=10;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:137,30,0:57 chr2 234888721 . C T 222 . DP=53;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,34,17;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr2 234890391 . G T 82 . DP=10;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:115,27,0:51 chr2 234916831 . A G 81 . DP=15;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,15;MQ=58;FQ=-72 GT:PL:GQ 1/1:114,45,0:87 chr2 234967539 . T A 140 . DP=65;VDB=0.0400;AF1=0.5;AC1=1;DP4=23,16,15,11;MQ=60;FQ=143;PV4=1,4.6e-29,1,0.13 GT:PL:GQ 0/1:170,0,255:99 chr2 235950187 . T C 225 . DP=133;VDB=0.0392;AF1=0.5;AC1=1;DP4=34,36,27,32;MQ=60;FQ=225;PV4=0.86,1,0.061,1 GT:PL:GQ 0/1:255,0,255:99 chr2 235950391 . C T 164 . DP=76;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,28,9,28;MQ=59;FQ=167;PV4=1,4.7e-13,0.49,0.49 GT:PL:GQ 0/1:194,0,255:99 chr2 235951819 . A G 120 . DP=41;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,18,5,12;MQ=60;FQ=123;PV4=1,1.5e-15,1,0.23 GT:PL:GQ 0/1:150,0,255:99 chr2 235961953 . G A 100 . DP=94;VDB=0.0392;AF1=0.5;AC1=1;DP4=36,16,29,10;MQ=60;FQ=103;PV4=0.65,1.2e-44,1,1 GT:PL:GQ 0/1:130,0,255:99 chr2 236403462 . C T 146 . DP=31;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,4,7,8;MQ=60;FQ=149;PV4=0.26,1.9e-09,1,1 GT:PL:GQ 0/1:176,0,239:99 chr2 236403607 . C A 165 . DP=10;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,1,9;MQ=60;FQ=-57 GT:PL:GQ 1/1:198,30,0:57 chr2 236433161 . G A 177 . DP=42;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,11,27;MQ=59;FQ=-141 GT:PL:GQ 1/1:210,114,0:99 chr2 236433331 . T C 6.79 . DP=6;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:37,6,0:7 chr2 236433390 . G A 21.8 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:53,6,0:10 chr2 236761396 . C T 69 . DP=44;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,12,5,8;MQ=60;FQ=72;PV4=0.33,6.4e-16,1,0.069 GT:PL:GQ 0/1:99,0,255:99 chr2 236839616 . C T 16.1 . DP=17;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,11,0,6;MQ=60;FQ=19.1;PV4=1,8.9e-09,1,1 GT:PL:GQ 0/1:46,0,165:49 chr2 236957822 . G A 222 . DP=96;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,26,70;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 237029104 . C T 43 . DP=6;VDB=0.0187;AF1=0.5;AC1=1;DP4=2,1,0,3;MQ=60;FQ=43.9;PV4=0.4,1,1,0.39 GT:PL:GQ 0/1:73,0,75:74 chr2 237032607 . T G 70 . DP=13;VDB=0.0014;AF1=0.5;AC1=1;DP4=8,0,5,0;MQ=58;FQ=73;PV4=1,0.44,0.11,0.4 GT:PL:GQ 0/1:100,0,148:99 chr2 237032703 . T C 100 . DP=45;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,12,10,6;MQ=60;FQ=103;PV4=0.75,3.5e-10,1,0.18 GT:PL:GQ 0/1:130,0,255:99 chr2 237032837 . G A 67 . DP=9;VDB=0.0022;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=60;FQ=70;PV4=1,0.16,1,1 GT:PL:GQ 0/1:97,0,120:99 chr2 237103548 . G A 148 . DP=41;VDB=0.0359;AF1=0.5;AC1=1;DP4=12,8,13,6;MQ=59;FQ=151;PV4=0.74,8.5e-07,1,0.029 GT:PL:GQ 0/1:178,0,255:99 chr2 237103623 . A G 135 . DP=36;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,11,8,13;MQ=59;FQ=138;PV4=0.25,8.3e-12,0.22,1 GT:PL:GQ 0/1:165,0,195:99 chr2 237103697 . G T 14.2 . DP=6;VDB=0.0040;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=17.1;PV4=1,0.0097,1,1 GT:PL:GQ 0/1:44,0,78:47 chr2 237146643 . TGTGGTGGTGGTGG TGTGGTGGTGG 217 . INDEL;DP=16;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,3,4,2;MQ=58;FQ=217;PV4=1,0.014,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 237149941 . C T 164 . DP=55;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,6,22,8;MQ=60;FQ=167;PV4=1,9.4e-18,1,0.24 GT:PL:GQ 0/1:194,0,255:99 chr2 237150166 . A C 222 . DP=47;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,15,30;MQ=58;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr2 237247036 . GAAAAAAAAA GAAAAAAAAAA 84.5 . INDEL;DP=74;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,46;MQ=59;FQ=-219 GT:PL:GQ 1/1:125,184,0:99 chr2 237252454 . C A 225 . DP=57;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,11,9,18;MQ=60;FQ=225;PV4=0.037,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 237255303 . A G 130 . DP=17;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,7;MQ=60;FQ=-78 GT:PL:GQ 1/1:163,51,0:99 chr2 237285889 . G A 225 . DP=65;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,22,8,23;MQ=60;FQ=225;PV4=0.59,1,0.15,0.13 GT:PL:GQ 0/1:255,0,255:99 chr2 237374309 . C T 78 . DP=40;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,16,5,14;MQ=59;FQ=81;PV4=0.69,1.3e-21,1,0.49 GT:PL:GQ 0/1:108,0,253:99 chr2 237395443 . C G 6.2 . DP=12;VDB=0.0206;AF1=0.4999;AC1=1;DP4=9,0,1,2;MQ=60;FQ=8.65;PV4=0.045,4e-06,1,0.4 GT:PL:GQ 0/1:35,0,161:36 chr2 237396935 . G A 5.46 . DP=15;VDB=0.0025;AF1=0.4999;AC1=1;DP4=0,8,0,5;MQ=58;FQ=7.8;PV4=1,2.5e-10,1,1 GT:PL:GQ 0/1:34,0,147:34 chr2 237412168 . A G 86 . DP=34;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,4,16,1;MQ=60;FQ=89;PV4=0.34,1.1e-06,1,1 GT:PL:GQ 0/1:116,0,242:99 chr2 237412399 . A G 63 . DP=19;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,12,0,5;MQ=60;FQ=66;PV4=1,1,1,0.17 GT:PL:GQ 0/1:93,0,179:96 chr2 237489904 . C T 178 . DP=93;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,32,15,28;MQ=60;FQ=181;PV4=1,5.7e-27,1,1 GT:PL:GQ 0/1:208,0,255:99 chr2 237995735 . gttgttttgttttgtttt gTTGTTttgttttgttttgtttt 162 . INDEL;DP=14;VDB=0.0014;AF1=0.5;AC1=1;DP4=7,0,7,0;MQ=56;FQ=165;PV4=1,1,0.077,0.28 GT:PL:GQ 0/1:200,0,228:99 chr2 238005370 . GTT GT 4.42 . INDEL;DP=8;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,3,2,0;MQ=60;FQ=6.56;PV4=0.46,0.00015,1,1 GT:PL:GQ 0/1:40,0,176:40 chr2 238166147 . G A 193 . DP=22;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,16,6;MQ=60;FQ=-93 GT:PL:GQ 1/1:226,66,0:99 chr2 238233483 . G A 95 . DP=61;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,22,3,29;MQ=60;FQ=98;PV4=1,6.1e-21,1,1 GT:PL:GQ 0/1:125,0,224:99 chr2 238243292 . G A 71.1 . DP=9;VDB=0.0343;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-48 GT:PL:GQ 1/1:104,21,0:39 chr2 238243464 . C G 152 . DP=19;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,8,10;MQ=60;FQ=-81 GT:PL:GQ 1/1:185,54,0:99 chr2 238244963 . A G 222 . DP=55;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,33,19;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr2 238249630 . C T 222 . DP=89;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,42,45;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 238258814 . C G 215 . DP=77;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,42,30;MQ=59;FQ=-244 GT:PL:GQ 1/1:248,217,0:99 chr2 238259675 . G A 78 . DP=40;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,4,16,2;MQ=60;FQ=81;PV4=0.66,6.1e-10,1,1 GT:PL:GQ 0/1:108,0,253:99 chr2 238261112 . G A 54.1 . DP=56;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,1;MQ=60;FQ=-45 GT:PL:GQ 1/1:87,18,0:33 chr2 238261113 . C A 33.3 . DP=56;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:66,15,0:27 chr2 238266633 . G A 24 . DP=3;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:56,9,0:15 chr2 238267058 . G A 222 . DP=56;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,43,11;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr2 238277573 . C A 90 . DP=70;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,15,12,13;MQ=59;FQ=93;PV4=0.79,4.2e-20,0.42,1 GT:PL:GQ 0/1:120,0,255:99 chr2 238277795 . A G 149 . DP=56;VDB=0.0398;AF1=0.5;AC1=1;DP4=10,16,6,22;MQ=60;FQ=152;PV4=0.24,1.3e-19,0.17,0.11 GT:PL:GQ 0/1:179,0,255:99 chr2 238283605 . G A 160 . DP=143;VDB=0.0393;AF1=0.5;AC1=1;DP4=41,35,27,35;MQ=60;FQ=163;PV4=0.24,1.5e-31,1,0.013 GT:PL:GQ 0/1:190,0,255:99 chr2 238475826 . C A 166 . DP=38;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,23,2,13;MQ=59;FQ=149;PV4=0.15,1,0.38,1 GT:PL:GQ 0/1:196,0,176:99 chr2 238483164 . T C 225 . DP=84;VDB=0.0216;AF1=0.5;AC1=1;DP4=15,31,14,24;MQ=59;FQ=225;PV4=0.82,1,0.45,0.12 GT:PL:GQ 0/1:255,0,255:99 chr2 238484222 . G A 130 . DP=11;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,5,3,3;MQ=60;FQ=84;PV4=0.18,0.37,1,0.042 GT:PL:GQ 0/1:160,0,111:99 chr2 238485256 . T C 70 . DP=36;VDB=0.0140;AF1=0.5;AC1=1;DP4=12,7,15,2;MQ=60;FQ=73;PV4=0.13,8.4e-07,1,0.083 GT:PL:GQ 0/1:100,0,252:99 chr2 238485481 . G A 42 . DP=18;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,7,0,10;MQ=60;FQ=45;PV4=0.44,5.5e-08,1,0.21 GT:PL:GQ 0/1:72,0,158:75 chr2 238486767 . A G 225 . DP=84;VDB=0.0384;AF1=0.5;AC1=1;DP4=19,25,14,19;MQ=60;FQ=225;PV4=1,1,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr2 238494161 . C T 5.46 . DP=5;VDB=0.0223;AF1=0.4999;AC1=1;DP4=0,2,0,3;MQ=60;FQ=7.28;PV4=1,0.015,1,1 GT:PL:GQ 0/1:34,0,42:34 chr2 238494742 . A G 225 . DP=73;VDB=0.0393;AF1=0.5;AC1=1;DP4=8,26,8,28;MQ=60;FQ=225;PV4=1,1,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr2 238499863 . AA AAATTCTTCAGGAGACTCTA 21.5 . INDEL;DP=15;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,2,4,0;MQ=52;FQ=24.5;PV4=0.52,1,0,1 GT:PL:GQ 0/1:59,0,255:62 chr2 238499969 . G A 63 . DP=21;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,7,2,9;MQ=54;FQ=66;PV4=1,5.1e-06,0.0091,0.3 GT:PL:GQ 0/1:93,0,176:96 chr2 238500642 . A G 128 . DP=10;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,3,1,6;MQ=60;FQ=34;PV4=1,1,1,0.16 GT:PL:GQ 0/1:158,0,61:64 chr2 238536255 . C G 19 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:51,9,0:15 chr2 238536392 . T G 80.5 . DP=4;VDB=0.0309;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:113,12,0:21 chr2 238688244 . A G 222 . DP=10;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,4,5;MQ=60;FQ=-54 GT:PL:GQ 1/1:255,27,0:51 chr2 238999883 . T C 180 . DP=16;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,10,6;MQ=59;FQ=-75 GT:PL:GQ 1/1:213,48,0:93 chr2 239000091 . T G 105 . DP=11;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,3,7;MQ=60;FQ=-57 GT:PL:GQ 1/1:138,30,0:57 chr2 239005586 . G A 72.1 . DP=7;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:105,21,0:39 chr2 239006879 . C T 212 . DP=28;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,10,18;MQ=60;FQ=-111 GT:PL:GQ 1/1:245,84,0:99 chr2 239007755 . CATTATTA CATTA 214 . INDEL;DP=18;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,17,1;MQ=53;FQ=-88.5 GT:PL:GQ 1/1:255,54,0:99 chr2 239007806 . A G 180 . DP=58;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,44,10;MQ=56;FQ=-190 GT:PL:GQ 1/1:213,163,0:99 chr2 239007850 . T A 193 . DP=84;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,51,29;MQ=59;FQ=-268 GT:PL:GQ 1/1:226,241,0:99 chr2 239007991 . T A 143 . DP=47;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,2,39;MQ=58;FQ=-150 GT:PL:GQ 1/1:176,123,0:99 chr2 239010690 . C A 66.3 . DP=6;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,2,3;MQ=60;FQ=-42 GT:PL:GQ 1/1:99,15,0:27 chr2 239010719 . T C 18.8 . DP=3;VDB=0.0161;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:50,6,0:10 chr2 239016539 . C G 222 . DP=64;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,33,30;MQ=60;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr2 239016640 . G T 98 . DP=26;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,3,21;MQ=60;FQ=-99 GT:PL:GQ 1/1:131,72,0:99 chr2 239025523 . T C 222 . DP=45;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,27,17;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr2 239033901 . T C 63 . DP=19;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,4,8,2;MQ=60;FQ=66;PV4=0.35,1.2e-08,1,0.2 GT:PL:GQ 0/1:93,0,196:96 chr2 239034043 . A C 96.1 . DP=7;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,2,5;MQ=60;FQ=-48 GT:PL:GQ 1/1:129,21,0:39 chr2 239036416 . T C 141 . DP=31;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,6,22;MQ=60;FQ=-111 GT:PL:GQ 1/1:174,84,0:99 chr2 239038912 . T C 169 . DP=44;VDB=0.0244;AF1=1;AC1=2;DP4=0,1,23,20;MQ=59;FQ=-130;PV4=0.48,0.0011,1,0.26 GT:PL:GQ 1/1:202,103,0:99 chr2 239039057 . A G 222 . DP=33;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,21;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr2 239039075 . G T 222 . DP=31;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,18;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr2 239039637 . T C 106 . DP=6;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,2,3;MQ=60;FQ=-42 GT:PL:GQ 1/1:139,15,0:27 chr2 239039896 . G C 167 . DP=47;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,33,12;MQ=60;FQ=-162 GT:PL:GQ 1/1:200,135,0:99 chr2 239040187 . T C 222 . DP=41;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,26,15;MQ=60;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr2 239049540 . G A 222 . DP=76;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,44,29;MQ=60;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr2 239050033 . C T 136 . DP=27;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,2,24;MQ=60;FQ=-105 GT:PL:GQ 1/1:169,78,0:99 chr2 239051550 . T C 27 . DP=3;VDB=0.0107;AF1=1;AC1=2;DP4=0,0,0,3;MQ=42;FQ=-36 GT:PL:GQ 1/1:59,9,0:16 chr2 239053436 . G C 3.41 . DP=2;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:32,6,0:4 chr2 239053685 . A C 205 . DP=36;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,5,29;MQ=60;FQ=-129 GT:PL:GQ 1/1:238,102,0:99 chr2 239054504 . G T 110 . DP=16;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,12;MQ=60;FQ=-69 GT:PL:GQ 1/1:143,42,0:81 chr2 239059484 . T C 222 . DP=22;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,19,3;MQ=57;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr2 239071244 . A G 107 . DP=10;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:140,30,0:57 chr2 239073046 . C T 92.1 . DP=7;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,3,4;MQ=60;FQ=-48 GT:PL:GQ 1/1:125,21,0:39 chr2 239075812 . C T 209 . DP=54;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,17,34;MQ=60;FQ=-181 GT:PL:GQ 1/1:242,154,0:99 chr2 239075935 . A G 148 . DP=63;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,29,20;MQ=60;FQ=-175 GT:PL:GQ 1/1:181,148,0:99 chr2 239082166 . GCC GCCC 214 . INDEL;DP=53;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,40,13;MQ=59;FQ=-195 GT:PL:GQ 1/1:255,160,0:99 chr2 239092474 . C T 131 . DP=31;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,6,23;MQ=60;FQ=-114 GT:PL:GQ 1/1:164,87,0:99 chr2 239093788 . T C 111 . DP=21;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,18,2;MQ=59;FQ=-87 GT:PL:GQ 1/1:144,60,0:99 chr2 239102856 . A G 222 . DP=45;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,38,7;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr2 239103574 . G A 155 . DP=73;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,14,54;MQ=59;FQ=-201;PV4=1,1e-06,0.4,0.35 GT:PL:GQ 1/1:188,174,0:99 chr2 239103603 . C G 222 . DP=56;VDB=0.0298;AF1=1;AC1=2;DP4=0,1,7,44;MQ=59;FQ=-147;PV4=1,0.4,0.4,0.27 GT:PL:GQ 1/1:255,120,0:99 chr2 239112344 . G A 23.8 . DP=2;VDB=0.0122;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:55,6,0:10 chr2 239133980 . C T 136 . DP=46;VDB=0.0393;AF1=0.5;AC1=1;DP4=11,8,11,13;MQ=59;FQ=139;PV4=0.54,4.1e-14,1,0.27 GT:PL:GQ 0/1:166,0,255:99 chr2 239134056 . A G 151 . DP=50;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,7,21,12;MQ=60;FQ=154;PV4=0.77,1.2e-10,1,1 GT:PL:GQ 0/1:181,0,229:99 chr2 239134063 . G T 146 . DP=53;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,7,20,12;MQ=60;FQ=149;PV4=1,1.5e-17,1,1 GT:PL:GQ 0/1:176,0,250:99 chr2 239134138 . A C 100 . DP=45;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,16,2,20;MQ=59;FQ=103;PV4=0.24,3.3e-07,1,0.27 GT:PL:GQ 0/1:130,0,254:99 chr2 239139883 . G C 203 . DP=35;VDB=0.0365;AF1=1;AC1=2;DP4=0,1,12,22;MQ=59;FQ=-103;PV4=1,0.013,1,1 GT:PL:GQ 1/1:236,76,0:99 chr2 239140403 . T C 99.3 . DP=5;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:132,15,0:27 chr2 239140426 . a aC 32.5 . INDEL;DP=10;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-64.5 GT:PL:GQ 1/1:73,30,0:55 chr2 239140434 . C A 39 . DP=13;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:72,30,0:56 chr2 239140728 . A G 156 . DP=35;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,20,14;MQ=59;FQ=-129 GT:PL:GQ 1/1:189,102,0:99 chr2 239148970 . C A 222 . DP=22;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,19,3;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr2 239148996 . cccgtccgtccgtccgtccgtcc cccgtccgtccgtccgtcc 214 . INDEL;DP=31;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,25,6;MQ=58;FQ=-128 GT:PL:GQ 1/1:255,93,0:99 chr2 239165633 . C T 225 . DP=45;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,10,6,18;MQ=60;FQ=221;PV4=0.49,0.23,1,0.16 GT:PL:GQ 0/1:255,0,249:99 chr2 239165663 . T C 167 . DP=39;VDB=0.0373;AF1=0.5;AC1=1;DP4=5,16,5,8;MQ=60;FQ=170;PV4=0.45,0.29,1,1 GT:PL:GQ 0/1:197,0,255:99 chr2 239181904 . A G 153 . DP=31;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,6,24;MQ=60;FQ=-117 GT:PL:GQ 1/1:186,90,0:99 chr2 239185922 . T G 93 . DP=14;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,8,0,6;MQ=60;FQ=96;PV4=1,0.45,1,0.16 GT:PL:GQ 0/1:123,0,149:99 chr2 239229372 . C A 75.3 . DP=5;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:108,15,0:27 chr2 239229440 . A G 19.1 . DP=5;VDB=0.0104;AF1=0.5;AC1=1;DP4=0,2,1,2;MQ=60;FQ=15.2;PV4=1,0.063,1,0.44 GT:PL:GQ 0/1:49,0,43:45 chr2 239234396 . A G 15.1 . DP=7;VDB=0.0254;AF1=0.5;AC1=1;DP4=2,1,3,0;MQ=60;FQ=18.1;PV4=1,0.00024,1,1 GT:PL:GQ 0/1:45,0,97:48 chr2 239253266 . C A 147 . DP=45;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,17,7,13;MQ=59;FQ=150;PV4=0.75,1.6e-13,0.14,1 GT:PL:GQ 0/1:177,0,255:99 chr2 239261866 . G A 127 . DP=38;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,16,5,12;MQ=60;FQ=130;PV4=0.7,3.3e-14,1,0.43 GT:PL:GQ 0/1:157,0,255:99 chr2 239306268 . A C 117 . DP=25;VDB=0.0014;AF1=0.5;AC1=1;DP4=2,13,0,10;MQ=59;FQ=120;PV4=0.5,1,0.11,0.38 GT:PL:GQ 0/1:147,0,215:99 chr2 239307245 . A G 12 . DP=3;VDB=0.0156;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr2 239342096 . G A 43 . DP=8;VDB=0.0163;AF1=0.5;AC1=1;DP4=5,0,3,0;MQ=60;FQ=46;PV4=1,1,1,0.46 GT:PL:GQ 0/1:73,0,114:76 chr2 239344263 . G A 30 . DP=4;VDB=0.0165;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=31.3;PV4=1,0.21,1,0.27 GT:PL:GQ 0/1:60,0,63:61 chr2 239344412 . C T 178 . DP=57;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,11,17,14;MQ=60;FQ=181;PV4=1,2.5e-17,0.19,1 GT:PL:GQ 0/1:208,0,255:99 chr2 239344663 . T A 166 . DP=31;VDB=0.0019;AF1=0.5;AC1=1;DP4=2,17,2,10;MQ=59;FQ=169;PV4=0.63,1,1,1 GT:PL:GQ 0/1:196,0,232:99 chr2 239976598 . G A 134 . DP=84;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,32,6,36;MQ=58;FQ=137;PV4=0.41,9.4e-35,1,0.14 GT:PL:GQ 0/1:164,0,255:99 chr2 239988606 . C T 225 . DP=55;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,14,13,13;MQ=60;FQ=225;PV4=1,0.45,1,0.4 GT:PL:GQ 0/1:255,0,255:99 chr2 240024654 . G A 20 . DP=11;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,6,0,5;MQ=60;FQ=23;PV4=1,9e-05,1,1 GT:PL:GQ 0/1:50,0,119:53 chr2 240037032 . G A 113 . DP=30;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,10,5,9;MQ=59;FQ=116;PV4=1,7.4e-09,1,1 GT:PL:GQ 0/1:143,0,248:99 chr2 240048481 . C T 61 . DP=14;VDB=0.0384;AF1=0.5;AC1=1;DP4=1,8,1,4;MQ=55;FQ=64;PV4=1,0.0043,1,1 GT:PL:GQ 0/1:91,0,161:94 chr2 240048505 . G A 47 . DP=8;VDB=0.0141;AF1=0.5;AC1=1;DP4=0,5,0,3;MQ=54;FQ=50;PV4=1,1,1,1 GT:PL:GQ 0/1:77,0,102:80 chr2 240066417 . A G 144 . DP=82;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,44,33;MQ=60;FQ=-259 GT:PL:GQ 1/1:177,232,0:99 chr2 240066526 . T C 181 . DP=42;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,5,36;MQ=60;FQ=-150 GT:PL:GQ 1/1:214,123,0:99 chr2 240078587 . GACACAC GACAC 133 . INDEL;DP=9;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,2,0,6;MQ=60;FQ=51.5;PV4=1,0.18,1,0.28 GT:PL:GQ 0/1:171,0,86:89 chr2 240083528 . G A 112 . DP=62;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,27,10,17;MQ=60;FQ=115;PV4=0.27,2e-23,0.13,0.27 GT:PL:GQ 0/1:142,0,255:99 chr2 240083731 . C T 83 . DP=17;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,0,5,1;MQ=60;FQ=86;PV4=0.35,0.013,1,0.26 GT:PL:GQ 0/1:113,0,161:99 chr2 240085674 . C T 145 . DP=12;VDB=0.0305;AF1=0.5001;AC1=1;DP4=0,2,1,9;MQ=60;FQ=8.65;PV4=1,0.15,1,0.35 GT:PL:GQ 0/1:175,0,35:38 chr2 240111477 . A T 33.8 . DP=3;VDB=0.0170;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:65,6,0:10 chr2 240323661 . C A 62 . DP=37;VDB=0.0066;AF1=0.5;AC1=1;DP4=20,5,7,4;MQ=60;FQ=65;PV4=0.41,2.6e-11,1,1 GT:PL:GQ 0/1:92,0,255:95 chr2 240323905 . TG TGG 217 . INDEL;DP=63;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,13,11,16;MQ=59;FQ=217;PV4=0.12,1,1,0.0072 GT:PL:GQ 0/1:255,0,255:99 chr2 240323977 . C T 168 . DP=65;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,13,15,30;MQ=60;FQ=171;PV4=1,4e-19,1,1 GT:PL:GQ 0/1:198,0,232:99 chr2 240500170 . G A 222 . DP=47;VDB=0.0399;AF1=1;AC1=2;DP4=1,0,36,8;MQ=59;FQ=-133;PV4=1,0.32,1,0.22 GT:PL:GQ 1/1:255,106,0:99 chr2 240500294 . A C 222 . DP=126;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,84,39;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 240500413 . A G 222 . DP=140;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,55,78;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr2 240504878 . C T 146 . DP=49;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,11,37;MQ=60;FQ=-171 GT:PL:GQ 1/1:179,144,0:99 chr2 240504931 . A G 96 . DP=17;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,0,17;MQ=60;FQ=-78 GT:PL:GQ 1/1:129,51,0:99 chr2 240684619 . G A 225 . DP=47;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,7,12,15;MQ=60;FQ=225;PV4=0.24,0.054,0.2,0.12 GT:PL:GQ 0/1:255,0,255:99 chr2 240721384 . C A 37 . DP=30;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,6,5,3;MQ=59;FQ=40;PV4=0.67,2.5e-05,1,0.15 GT:PL:GQ 0/1:67,0,255:70 chr2 240900691 . C G 175 . DP=52;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,13,12,17;MQ=60;FQ=178;PV4=1,4.3e-19,0.19,0.22 GT:PL:GQ 0/1:205,0,255:99 chr2 240900795 . C T 30 . DP=12;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,5,0,7;MQ=60;FQ=33;PV4=1,3e-09,1,1 GT:PL:GQ 0/1:60,0,112:63 chr2 240912983 . G T 85 . DP=13;VDB=0.0118;AF1=0.5;AC1=1;DP4=5,1,4,3;MQ=60;FQ=88;PV4=0.56,1.8e-05,1,0.26 GT:PL:GQ 0/1:115,0,140:99 chr2 240954079 . G A 103 . DP=46;VDB=0.0380;AF1=0.5;AC1=1;DP4=30,4,8,2;MQ=59;FQ=106;PV4=0.61,1,0.032,1 GT:PL:GQ 0/1:133,0,255:99 chr2 240957243 . C T 133 . DP=64;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,11,27,9;MQ=60;FQ=136;PV4=0.18,2e-23,1,1 GT:PL:GQ 0/1:163,0,255:99 chr2 240957801 . G A 23 . DP=12;VDB=0.0066;AF1=0.5;AC1=1;DP4=3,2,6,0;MQ=60;FQ=26;PV4=0.18,2.8e-06,1,1 GT:PL:GQ 0/1:53,0,119:56 chr2 240958129 . C T 41 . DP=12;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-60 GT:PL:GQ 1/1:74,33,0:62 chr2 240961728 . T C 222 . DP=218;VDB=0.0400;AF1=1;AC1=2;DP4=1,0,80,125;MQ=59;FQ=-282;PV4=0.39,0.0048,1,0.21 GT:PL:GQ 1/1:255,255,0:99 chr2 240961852 . A G 175 . DP=51;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,5,43;MQ=60;FQ=-171 GT:PL:GQ 1/1:208,144,0:99 chr2 240981179 . T C 32 . DP=11;VDB=0.0053;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=60;FQ=35;PV4=1,0.00026,1,0.32 GT:PL:GQ 0/1:62,0,105:65 chr2 240981262 . A C 119 . DP=63;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,10,26,7;MQ=59;FQ=122;PV4=0.27,5.3e-27,1,0.28 GT:PL:GQ 0/1:149,0,255:99 chr2 240981375 . T A 149 . DP=57;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,20,6,22;MQ=58;FQ=152;PV4=1,5e-11,1,1 GT:PL:GQ 0/1:179,0,255:99 chr2 240981487 . A G 23 . DP=5;VDB=0.0184;AF1=0.5;AC1=1;DP4=0,3,0,2;MQ=60;FQ=26;PV4=1,0.18,1,0.49 GT:PL:GQ 0/1:53,0,84:56 chr2 240982201 . A G 51 . DP=7;VDB=0.0070;AF1=0.5;AC1=1;DP4=4,0,3,0;MQ=60;FQ=53.9;PV4=1,1,1,0.015 GT:PL:GQ 0/1:81,0,98:84 chr2 240982219 . A G 4.77 . DP=7;VDB=0.0070;AF1=0.4999;AC1=1;DP4=4,0,3,0;MQ=60;FQ=6.99;PV4=1,3.7e-05,1,1 GT:PL:GQ 0/1:33,0,97:33 chr2 240982228 . C T 25 . DP=8;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=26.3;PV4=1,0.21,1,0.47 GT:PL:GQ 0/1:55,0,58:56 chr2 240982247 . A G 27 . DP=10;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,0,5,0;MQ=60;FQ=30;PV4=1,0.00063,1,1 GT:PL:GQ 0/1:57,0,100:60 chr2 240982271 . G A 81 . DP=15;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,1,5,1;MQ=58;FQ=84;PV4=1,0.03,0.12,1 GT:PL:GQ 0/1:111,0,176:99 chr2 240982443 . C T 72 . DP=16;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,6,4,5;MQ=60;FQ=75;PV4=0.31,4.8e-09,1,1 GT:PL:GQ 0/1:102,0,143:99 chr2 240982449 . C T 66 . DP=14;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,5,4,3;MQ=60;FQ=69;PV4=0.27,1.6e-05,1,1 GT:PL:GQ 0/1:96,0,135:99 chr2 240984789 . C T 225 . DP=32;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,5,11,8;MQ=57;FQ=214;PV4=1,0.015,1,0.23 GT:PL:GQ 0/1:255,0,241:99 chr2 240985099 . G A 80 . DP=9;VDB=0.0343;AF1=1;AC1=2;DP4=0,1,4,3;MQ=24;FQ=-36;PV4=1,1,1,0.24 GT:PL:GQ 1/1:112,9,0:16 chr2 241079554 . G A 45 . DP=10;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,5,1,4;MQ=60;FQ=48;PV4=1,0.018,1,0.092 GT:PL:GQ 0/1:75,0,95:78 chr2 241079846 . C T 92 . DP=22;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,7,5,9;MQ=59;FQ=95;PV4=0.35,5e-11,1,1 GT:PL:GQ 0/1:122,0,148:99 chr2 241375527 . C T 23 . DP=5;VDB=0.0225;AF1=0.5;AC1=1;DP4=1,1,1,2;MQ=60;FQ=21.9;PV4=1,0.0046,1,1 GT:PL:GQ 0/1:53,0,51:52 chr2 241389219 . G A 148 . DP=24;VDB=0.0140;AF1=0.5;AC1=1;DP4=11,1,11,1;MQ=59;FQ=151;PV4=1,0.029,1,0.31 GT:PL:GQ 0/1:178,0,196:99 chr2 241390002 . A G 166 . DP=66;VDB=0.0373;AF1=0.5;AC1=1;DP4=18,17,13,16;MQ=59;FQ=169;PV4=0.62,2.8e-07,0.45,0.02 GT:PL:GQ 0/1:196,0,255:99 chr2 241392491 . A G 22.8 . DP=2;VDB=0.0176;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:54,6,0:10 chr2 241395353 . A G 13 . DP=2;VDB=0.0157;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr2 241395503 . T C 75.3 . DP=5;VDB=0.0241;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:108,15,0:27 chr2 241396765 . G A 154 . DP=18;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,0,6,2;MQ=60;FQ=120;PV4=0.21,1,1,0.3 GT:PL:GQ 0/1:184,0,147:99 chr2 241396969 . T C 109 . DP=17;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,14;MQ=60;FQ=-75 GT:PL:GQ 1/1:142,48,0:93 chr2 241401741 . C T 129 . DP=11;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,2,3,3;MQ=60;FQ=103;PV4=1,1,1,1 GT:PL:GQ 0/1:159,0,130:99 chr2 241403014 . T C 35 . DP=7;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,1,0,5;MQ=60;FQ=25.8;PV4=0.29,0.0019,1,1 GT:PL:GQ 0/1:65,0,53:56 chr2 241403955 . GTGACGCCTGCGTGTGCGTGTCAACGCCTGTGTGCGCGCGTT GT 128 . INDEL;DP=32;VDB=0.0140;AF1=0.5;AC1=1;DP4=13,4,15,0;MQ=50;FQ=131;PV4=0.1,2.9e-06,1.5e-11,1 GT:PL:GQ 0/1:166,0,255:99 chr2 241404499 . C T 174 . DP=45;VDB=0.0392;AF1=0.5;AC1=1;DP4=10,10,12,13;MQ=60;FQ=177;PV4=1,1.1e-11,1,0.42 GT:PL:GQ 0/1:204,0,255:99 chr2 241405454 . G A 20.1 . DP=5;VDB=0.0027;AF1=0.5006;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-3.54;PV4=1,0.018,1,1 GT:PL:GQ 0/1:50,0,26:29 chr2 241405479 . C T 72 . DP=13;VDB=0.0033;AF1=0.5;AC1=1;DP4=4,4,5,0;MQ=58;FQ=75;PV4=0.1,1,1,0.43 GT:PL:GQ 0/1:102,0,186:99 chr2 241405528 . A G 222 . DP=29;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,11;MQ=58;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr2 241405608 . A G 82 . DP=28;VDB=0.0393;AF1=0.5;AC1=1;DP4=8,7,5,7;MQ=60;FQ=85;PV4=0.7,2.6e-05,1,0.17 GT:PL:GQ 0/1:112,0,254:99 chr2 241419090 . G A 68 . DP=13;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,3,0,5;MQ=60;FQ=71;PV4=0.44,0.48,1,0.41 GT:PL:GQ 0/1:98,0,120:99 chr2 241440020 . T C 125 . DP=78;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,28,12,23;MQ=59;FQ=128;PV4=0.61,3.9e-15,0.48,0.39 GT:PL:GQ 0/1:155,0,255:99 chr2 241451351 . G A 225 . DP=33;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,5,10,6;MQ=60;FQ=225;PV4=1,0.27,1,0.22 GT:PL:GQ 0/1:255,0,255:99 chr2 241452198 . T C 113 . DP=68;VDB=0.0392;AF1=0.5;AC1=1;DP4=27,11,21,6;MQ=60;FQ=116;PV4=0.58,1.3e-13,1,1 GT:PL:GQ 0/1:143,0,255:99 chr2 241452212 . T C 225 . DP=82;VDB=0.0398;AF1=0.5;AC1=1;DP4=25,15,21,12;MQ=60;FQ=225;PV4=1,1,1,0.058 GT:PL:GQ 0/1:255,0,255:99 chr2 241459754 . G A 33 . DP=9;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,0,3,1;MQ=60;FQ=36;PV4=0.44,0.0062,1,1 GT:PL:GQ 0/1:63,0,102:66 chr2 241465361 . T C 34.1 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:67,18,0:33 chr2 241492255 . G T 222 . DP=65;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,50,15;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr2 241496841 . C G 50 . DP=12;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,11;MQ=58;FQ=-60 GT:PL:GQ 1/1:83,33,0:63 chr2 241500674 . C G 84.5 . DP=5;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,3,1;MQ=54;FQ=-39 GT:PL:GQ 1/1:117,12,0:21 chr2 241500896 . C T 179 . DP=27;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,14,12;MQ=60;FQ=-105 GT:PL:GQ 1/1:212,78,0:99 chr2 241512049 . C A 24 . DP=19;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,10,0,6;MQ=60;FQ=27;PV4=1,7.3e-05,1,0.31 GT:PL:GQ 0/1:54,0,159:57 chr2 241512470 . G T 93 . DP=19;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,18,1;MQ=59;FQ=-84 GT:PL:GQ 1/1:126,57,0:99 chr2 241512712 . G C 30 . DP=7;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,2,0,5;MQ=60;FQ=17;PV4=1,0.00072,1,0.48 GT:PL:GQ 0/1:60,0,44:47 chr2 241526412 . C A 3.54 . DP=12;VDB=0.0163;AF1=0.4998;AC1=1;DP4=5,5,1,1;MQ=60;FQ=5.47;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,203:30 chr2 241531737 . A G 97 . DP=11;VDB=0.0033;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=60;FQ=82.9;PV4=1,1,1,1 GT:PL:GQ 0/1:127,0,110:99 chr2 241533845 . T C 12.3 . DP=5;VDB=0.0116;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=14.8;PV4=1,0.0031,1,1 GT:PL:GQ 0/1:42,0,53:44 chr2 241537421 . G A 128 . DP=33;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,7,12,7;MQ=59;FQ=131;PV4=0.47,7.4e-10,0.21,1 GT:PL:GQ 0/1:158,0,229:99 chr2 241537617 . TCC TC 174 . INDEL;DP=15;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,1,7,4;MQ=60;FQ=37.5;PV4=1,3.9e-06,1,0.39 GT:PL:GQ 0/1:212,0,72:75 chr2 241538074 . A G 217 . DP=34;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,8,6,10;MQ=59;FQ=219;PV4=0.33,0.085,0.091,0.44 GT:PL:GQ 0/1:247,0,255:99 chr2 241555784 . G T 24 . DP=12;VDB=0.0033;AF1=0.5;AC1=1;DP4=5,1,5,0;MQ=60;FQ=27;PV4=1,0.00023,1,1 GT:PL:GQ 0/1:54,0,136:57 chr2 241558397 . G A 225 . DP=41;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,4,11,6;MQ=59;FQ=225;PV4=0.29,0.43,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 241558547 . G A 210 . DP=37;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,17,5,11;MQ=59;FQ=213;PV4=0.46,0.27,0.42,0.34 GT:PL:GQ 0/1:240,0,255:99 chr2 241569329 . A G 151 . DP=14;VDB=0.0042;AF1=0.5;AC1=1;DP4=5,0,8,1;MQ=60;FQ=79;PV4=1,0.28,1,1 GT:PL:GQ 0/1:181,0,106:99 chr2 241570249 . A C 107 . DP=76;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,30,6,33;MQ=60;FQ=110;PV4=1,2.8e-29,0.17,0.35 GT:PL:GQ 0/1:137,0,255:99 chr2 241621869 . G A 7.8 . DP=5;VDB=0.0069;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=50;FQ=10.4;PV4=1,0.43,0,0.26 GT:PL:GQ 0/1:37,0,75:39 chr2 241622209 . T C 225 . DP=26;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,4,10,8;MQ=49;FQ=73;PV4=0.64,1,0.0022,0.13 GT:PL:GQ 0/1:255,0,100:99 chr2 241627928 . A G 74 . DP=51;VDB=0.0298;AF1=0.5;AC1=1;DP4=15,18,10,7;MQ=60;FQ=77;PV4=0.55,2.6e-15,1,1 GT:PL:GQ 0/1:104,0,255:99 chr2 241631267 . A G 7.8 . DP=11;VDB=0.0214;AF1=0.5;AC1=1;DP4=5,3,1,2;MQ=53;FQ=10.4;PV4=0.55,0.052,7.7e-11,0.4 GT:PL:GQ 0/1:37,0,177:39 chr2 241631413 . T G 75 . DP=20;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,8,2,6;MQ=58;FQ=78;PV4=1,1.8e-05,0.44,1 GT:PL:GQ 0/1:105,0,188:99 chr2 241631839 . G A 4.19 . DP=3;VDB=0.0147;AF1=0.5127;AC1=1;DP4=0,1,0,2;MQ=23;FQ=-14.2;PV4=1,0.15,1,0.33 GT:PL:GQ 0/1:32,0,13:19 chr2 241659368 . C A 19 . DP=3;VDB=0.0208;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:51,9,0:15 chr2 241661112 . A G 64 . DP=28;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,1,12,1;MQ=60;FQ=67;PV4=1,6.6e-11,1,1 GT:PL:GQ 0/1:94,0,201:97 chr2 241661192 . G A 95 . DP=55;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,10,18,6;MQ=60;FQ=98;PV4=0.55,3.4e-17,1,1 GT:PL:GQ 0/1:125,0,255:99 chr2 241667710 . A G 135 . DP=42;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,2,19,6;MQ=60;FQ=138;PV4=0.69,6.2e-15,1,0.078 GT:PL:GQ 0/1:165,0,197:99 chr2 241674222 . T C 82 . DP=17;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,7,2,4;MQ=60;FQ=85;PV4=1,0.31,1,1 GT:PL:GQ 0/1:112,0,185:99 chr2 241680633 . G T 115 . DP=6;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:148,18,0:33 chr2 241680802 . G A 76 . DP=25;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,6,3,10;MQ=60;FQ=79;PV4=0.39,9.9e-09,1,1 GT:PL:GQ 0/1:106,0,223:99 chr2 241696840 . atcctcctcctcctcctcctcctcctcctcctcc atcctcctcctcctcctcctcctcctcctcc 200 . INDEL;DP=46;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,2,1,6;MQ=58;FQ=203;PV4=0.1,0.012,0.19,1 GT:PL:GQ 0/1:238,0,255:99 chr2 241702561 . T A 87 . DP=29;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,3,12,1;MQ=59;FQ=90;PV4=0.61,1.7e-06,0.14,1 GT:PL:GQ 0/1:117,0,232:99 chr2 241708675 . C T 60 . DP=14;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,6,1,7;MQ=60;FQ=63;PV4=1,4e-06,1,0.35 GT:PL:GQ 0/1:90,0,119:93 chr2 241713646 . A G 91 . DP=67;VDB=0.0398;AF1=0.5;AC1=1;DP4=10,21,10,22;MQ=60;FQ=94;PV4=1,3.6e-22,1,1 GT:PL:GQ 0/1:121,0,255:99 chr2 241722445 . G A 66 . DP=29;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,4,14,1;MQ=59;FQ=69;PV4=0.17,1.1e-08,0.17,0.41 GT:PL:GQ 0/1:96,0,226:99 chr2 241722613 . A G 44.1 . DP=7;VDB=0.0053;AF1=0.505;AC1=1;DP4=0,1,0,6;MQ=60;FQ=-10.4;PV4=1,0.0043,1,0.22 GT:PL:GQ 0/1:74,0,17:20 chr2 241813453 . G A 225 . DP=91;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,38,10,31;MQ=60;FQ=225;PV4=1,0.12,1,0.4 GT:PL:GQ 0/1:255,0,255:99 chr2 241815308 . A G 134 . DP=51;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,9,12,8;MQ=60;FQ=137;PV4=0.76,7.5e-09,1,0.36 GT:PL:GQ 0/1:164,0,255:99 chr2 241816871 . G T 97 . DP=59;VDB=0.0393;AF1=0.5;AC1=1;DP4=13,13,10,18;MQ=60;FQ=100;PV4=0.41,9.2e-20,1,1 GT:PL:GQ 0/1:127,0,255:99 chr2 241827696 . A G 14.2 . DP=4;VDB=0.0094;AF1=0.5;AC1=1;DP4=2,0,1,1;MQ=60;FQ=17;PV4=1,0.012,1,0.3 GT:PL:GQ 0/1:44,0,61:47 chr2 241827798 . T C 60 . DP=9;VDB=0.0110;AF1=0.5;AC1=1;DP4=4,1,4,0;MQ=60;FQ=63;PV4=1,0.24,1,0.048 GT:PL:GQ 0/1:90,0,133:93 chr2 241828012 . T C 133 . DP=28;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,11,3,12;MQ=60;FQ=136;PV4=1,1.3e-09,1,1 GT:PL:GQ 0/1:163,0,208:99 chr2 241828034 . A G 136 . DP=19;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,3,16;MQ=60;FQ=-84 GT:PL:GQ 1/1:169,57,0:99 chr2 241830944 . G T 136 . DP=42;VDB=0.0271;AF1=0.5;AC1=1;DP4=16,4,15,6;MQ=59;FQ=139;PV4=0.72,7.3e-07,0.17,1 GT:PL:GQ 0/1:166,0,239:99 chr2 241830969 . G A 225 . DP=56;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,7,20,9;MQ=59;FQ=225;PV4=0.77,0.097,0.31,1 GT:PL:GQ 0/1:255,0,255:99 chr2 241831005 . C T 118 . DP=64;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,13,17,11;MQ=59;FQ=121;PV4=1,2.3e-22,0.23,1 GT:PL:GQ 0/1:148,0,255:99 chr2 241831264 . G A 178 . DP=110;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,35,17,33;MQ=60;FQ=181;PV4=0.56,3.4e-28,0.14,1 GT:PL:GQ 0/1:208,0,255:99 chr2 241831296 . C G 108 . DP=82;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,26,11,26;MQ=59;FQ=111;PV4=0.63,5.2e-29,0.47,1 GT:PL:GQ 0/1:138,0,255:99 chr2 241834907 . C T 146 . DP=35;VDB=0.0384;AF1=0.5;AC1=1;DP4=17,1,14,1;MQ=59;FQ=149;PV4=1,0.078,1,0.16 GT:PL:GQ 0/1:176,0,197:99 chr2 241834944 . T C 109 . DP=42;VDB=0.0322;AF1=0.5;AC1=1;DP4=20,3,16,3;MQ=60;FQ=112;PV4=1,3.4e-12,1,1 GT:PL:GQ 0/1:139,0,253:99 chr2 241835379 . G A 46 . DP=5;VDB=0.0313;AF1=0.501;AC1=1;DP4=0,1,2,2;MQ=60;FQ=-4.75;PV4=1,0.0025,1,0.26 GT:PL:GQ 0/1:76,0,24:27 chr2 241859352 . T G 28 . DP=13;VDB=0.0359;AF1=0.5;AC1=1;DP4=3,4,2,3;MQ=58;FQ=31;PV4=1,0.00011,1,0.019 GT:PL:GQ 0/1:58,0,151:61 chr2 241861904 . G C 12.3 . DP=10;VDB=0.0254;AF1=0.5;AC1=1;DP4=6,0,4,0;MQ=60;FQ=15.1;PV4=1,6.7e-06,1,1 GT:PL:GQ 0/1:42,0,128:44 chr2 241865156 . T C 133 . DP=44;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,13,9,7;MQ=59;FQ=136;PV4=0.75,3.8e-08,1,1 GT:PL:GQ 0/1:163,0,255:99 chr2 241865210 . C T 189 . DP=32;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,8,3,18;MQ=60;FQ=160;PV4=0.39,0.18,1,0.47 GT:PL:GQ 0/1:219,0,187:99 chr2 241871956 . G T 34.1 . DP=7;VDB=0.0014;AF1=0.5064;AC1=1;DP4=0,1,0,5;MQ=60;FQ=-11.3;PV4=1,0.001,1,1 GT:PL:GQ 0/1:64,0,16:19 chr2 241872597 . A G 88 . DP=19;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,5,3,8;MQ=60;FQ=91;PV4=1,0.0036,1,0.26 GT:PL:GQ 0/1:118,0,150:99 chr2 241874559 . T C 26 . DP=24;VDB=0.0241;AF1=0.5;AC1=1;DP4=3,10,1,8;MQ=60;FQ=29;PV4=0.62,4.7e-11,1,1 GT:PL:GQ 0/1:56,0,234:59 chr2 241889937 . A G 123 . DP=36;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,12,7,11;MQ=58;FQ=126;PV4=1,3.8e-16,0.038,0.32 GT:PL:GQ 0/1:153,0,255:99 chr2 241898824 . A G 31 . DP=22;VDB=0.0384;AF1=0.5;AC1=1;DP4=6,8,2,4;MQ=60;FQ=34;PV4=1,9.8e-09,1,1 GT:PL:GQ 0/1:61,0,255:64 chr2 241898947 . G T 45 . DP=10;VDB=0.0309;AF1=0.5;AC1=1;DP4=1,5,2,2;MQ=58;FQ=48;PV4=0.5,0.17,1,0.48 GT:PL:GQ 0/1:75,0,112:78 chr2 241904781 . C T 22 . DP=6;VDB=0.0116;AF1=0.5;AC1=1;DP4=4,0,1,1;MQ=60;FQ=25;PV4=0.33,0.0048,1,1 GT:PL:GQ 0/1:52,0,106:55 chr2 241905779 . A G 152 . DP=19;VDB=0.0373;AF1=0.5;AC1=1;DP4=6,3,2,7;MQ=60;FQ=155;PV4=0.15,0.35,1,1 GT:PL:GQ 0/1:182,0,196:99 chr2 241922430 . T C 66 . DP=14;VDB=0.0343;AF1=0.5;AC1=1;DP4=1,6,2,4;MQ=60;FQ=69;PV4=0.56,0.0023,1,0.053 GT:PL:GQ 0/1:96,0,149:99 chr2 241925343 . T C 186 . DP=45;VDB=0.0359;AF1=0.5;AC1=1;DP4=21,6,12,4;MQ=60;FQ=189;PV4=1,0.073,1,0.087 GT:PL:GQ 0/1:216,0,255:99 chr2 241928074 . A T 3.54 . DP=5;VDB=0.0186;AF1=0.4998;AC1=1;DP4=3,0,2,0;MQ=60;FQ=5.47;PV4=1,0.0096,1,1 GT:PL:GQ 0/1:31,0,79:30 chr2 241929228 . A G 149 . DP=14;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,8;MQ=60;FQ=-69 GT:PL:GQ 1/1:182,42,0:81 chr2 241932596 . A G 51 . DP=61;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,17,6,16;MQ=60;FQ=54;PV4=0.17,2.2e-22,0.12,0.48 GT:PL:GQ 0/1:81,0,255:84 chr2 241979550 . T C 225 . DP=55;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,18,12,11;MQ=60;FQ=225;PV4=0.42,1,0.13,0.06 GT:PL:GQ 0/1:255,0,255:99 chr2 241980123 . A G 38 . DP=19;VDB=0.0190;AF1=0.5;AC1=1;DP4=12,0,5,2;MQ=58;FQ=41;PV4=0.12,1.2e-07,1,0.49 GT:PL:GQ 0/1:68,0,162:71 chr2 241991029 . A G 73 . DP=13;VDB=0.0099;AF1=0.5;AC1=1;DP4=5,0,3,3;MQ=60;FQ=75.8;PV4=0.18,2.2e-05,1,1 GT:PL:GQ 0/1:103,0,116:99 chr2 241991875 . G A 49 . DP=20;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,8,1,7;MQ=60;FQ=52;PV4=0.6,2.7e-08,1,1 GT:PL:GQ 0/1:79,0,224:82 chr2 241992640 . G A 115 . DP=30;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,9,8,6;MQ=58;FQ=118;PV4=0.72,0.00041,1,0.42 GT:PL:GQ 0/1:145,0,237:99 chr2 242002828 . C T 225 . DP=32;VDB=0.0118;AF1=0.5;AC1=1;DP4=10,1,14,6;MQ=59;FQ=147;PV4=0.37,0.076,0.23,0.1 GT:PL:GQ 0/1:255,0,174:99 chr2 242003487 . C T 164 . DP=20;VDB=0.0393;AF1=0.5;AC1=1;DP4=2,5,4,6;MQ=60;FQ=116;PV4=1,0.3,1,0.19 GT:PL:GQ 0/1:194,0,143:99 chr2 242003558 . T C 108 . DP=7;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,4;MQ=60;FQ=-48 GT:PL:GQ 1/1:141,21,0:39 chr2 242004199 . G C 56 . DP=33;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,5,12,3;MQ=59;FQ=59;PV4=0.43,2.6e-11,0.17,1 GT:PL:GQ 0/1:86,0,225:89 chr2 242004219 . TG TGG 214 . INDEL;DP=43;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,24,18;MQ=59;FQ=-161 GT:PL:GQ 1/1:255,126,0:99 chr2 242004866 . A G 153 . DP=44;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,13,10,10;MQ=59;FQ=156;PV4=0.76,6.3e-09,0.46,0.15 GT:PL:GQ 0/1:183,0,255:99 chr2 242011084 . T C 43 . DP=10;VDB=0.0284;AF1=0.5;AC1=1;DP4=1,3,0,6;MQ=58;FQ=46;PV4=0.4,1.3e-05,0.22,0.14 GT:PL:GQ 0/1:73,0,102:76 chr2 242011151 . A G 170 . DP=9;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,6,2;MQ=60;FQ=-51 GT:PL:GQ 1/1:203,24,0:45 chr2 242021011 . A G 54 . DP=66;VDB=0.0025;AF1=0.5;AC1=1;DP4=40,7,7,7;MQ=53;FQ=57;PV4=0.011,0.0014,0.00043,0.00016 GT:PL:GQ 0/1:84,0,255:87 chr2 242021742 . G T 156 . DP=69;VDB=0.0298;AF1=0.5;AC1=1;DP4=22,15,13,14;MQ=60;FQ=159;PV4=0.45,2.2e-13,1,1 GT:PL:GQ 0/1:186,0,255:99 chr2 242021871 . G A 33 . DP=29;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,18,2,7;MQ=60;FQ=36;PV4=0.23,2e-11,1,0.23 GT:PL:GQ 0/1:63,0,209:66 chr2 242026608 . A G 65.5 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:98,12,0:21 chr2 242026649 . A G 215 . DP=28;VDB=0.0066;AF1=0.5;AC1=1;DP4=7,1,17,2;MQ=59;FQ=118;PV4=1,1,0.26,1 GT:PL:GQ 0/1:245,0,145:99 chr2 242029359 . A G 137 . DP=36;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,9,8,8;MQ=59;FQ=140;PV4=1,4.4e-14,0.13,1 GT:PL:GQ 0/1:167,0,255:99 chr2 242029426 . G A 181 . DP=30;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,12,3,10;MQ=60;FQ=184;PV4=1,0.18,1,0.21 GT:PL:GQ 0/1:211,0,254:99 chr2 242036797 . A G 225 . DP=80;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,27,19,13;MQ=60;FQ=225;PV4=0.17,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 242041728 . G A 176 . DP=49;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,8,16,10;MQ=60;FQ=179;PV4=1,8.2e-12,1,0.37 GT:PL:GQ 0/1:206,0,255:99 chr2 242046737 . T C 215 . DP=38;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,5,15,3;MQ=60;FQ=218;PV4=0.69,1,1,1 GT:PL:GQ 0/1:245,0,255:99 chr2 242046785 . A C 147 . DP=54;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,13,17,10;MQ=60;FQ=150;PV4=0.27,3e-18,1,1 GT:PL:GQ 0/1:177,0,255:99 chr2 242047750 . A G 82 . DP=14;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,6,0,6;MQ=60;FQ=85;PV4=0.47,1,1,1 GT:PL:GQ 0/1:112,0,157:99 chr2 242051777 . G A 123 . DP=21;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,5,4,10;MQ=59;FQ=85;PV4=1,8e-08,0.26,0.21 GT:PL:GQ 0/1:153,0,112:99 chr2 242054403 . G A 76 . DP=21;VDB=0.0053;AF1=0.5;AC1=1;DP4=2,2,16,1;MQ=60;FQ=39;PV4=0.08,4.5e-07,1,1 GT:PL:GQ 0/1:106,0,66:69 chr2 242062162 . C T 121 . DP=90;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,16,29,17;MQ=59;FQ=124;PV4=1,2.7e-33,1,0.41 GT:PL:GQ 0/1:151,0,255:99 chr2 242063350 . T C 56.1 . DP=6;VDB=0.0298;AF1=0.5102;AC1=1;DP4=0,1,4,1;MQ=60;FQ=-13.2;PV4=0.33,0.078,1,0.31 GT:PL:GQ 0/1:86,0,14:17 chr2 242072280 . G A 73 . DP=71;VDB=0.0400;AF1=0.5;AC1=1;DP4=25,13,21,10;MQ=60;FQ=76;PV4=1,1.2e-36,1,0.44 GT:PL:GQ 0/1:103,0,255:99 chr2 242077496 . C T 225 . DP=36;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,9,10,15;MQ=60;FQ=134;PV4=0.27,1,1,0.25 GT:PL:GQ 0/1:255,0,161:99 chr2 242079007 . A G 225 . DP=86;VDB=0.0216;AF1=0.5;AC1=1;DP4=19,20,13,34;MQ=60;FQ=225;PV4=0.072,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 242082222 . C A 59 . DP=5;VDB=0.0022;AF1=0.5016;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-6.18;PV4=1,0.35,1,1 GT:PL:GQ 0/1:89,0,22:25 chr2 242082262 . T C 51 . DP=17;VDB=0.0099;AF1=0.5;AC1=1;DP4=6,0,11,0;MQ=60;FQ=54;PV4=1,1.4e-09,1,1 GT:PL:GQ 0/1:81,0,115:84 chr2 242082480 . A C 105 . DP=34;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,9,6,14;MQ=59;FQ=108;PV4=1,1.3e-09,1,1 GT:PL:GQ 0/1:135,0,216:99 chr2 242099961 . C T 98 . DP=24;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,0,24;MQ=59;FQ=-99 GT:PL:GQ 1/1:131,72,0:99 chr2 242121959 . G A 56 . DP=4;VDB=0.0125;AF1=0.5004;AC1=1;DP4=1,0,3,0;MQ=60;FQ=3.55;PV4=1,0.35,1,0.26 GT:PL:GQ 0/1:86,0,28:31 chr2 242139491 . C T 222 . DP=59;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,51,5;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr2 242141719 . C T 225 . DP=47;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,18,6,20;MQ=60;FQ=194;PV4=0.44,1,1,1 GT:PL:GQ 0/1:255,0,221:99 chr2 242142737 . T C 64.1 . DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:97,18,0:33 chr2 242151585 . C T 171 . DP=213;VDB=0.0380;AF1=0.5;AC1=1;DP4=73,45,52,39;MQ=60;FQ=174;PV4=0.57,4.7e-56,1,1 GT:PL:GQ 0/1:201,0,255:99 chr2 242157087 . C T 55 . DP=22;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,1,8,1;MQ=60;FQ=58;PV4=1,6.3e-08,1,0.37 GT:PL:GQ 0/1:85,0,170:88 chr2 242157228 . G T 151 . DP=36;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,11,5,17;MQ=59;FQ=153;PV4=0.69,1.2e-08,1,0.14 GT:PL:GQ 0/1:181,0,188:99 chr2 242157241 . G A 141 . DP=31;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,13,2,10;MQ=58;FQ=144;PV4=0.67,0.41,0.39,1 GT:PL:GQ 0/1:171,0,255:99 chr2 242163359 . G A 164 . DP=76;VDB=0.0399;AF1=0.5;AC1=1;DP4=20,22,14,18;MQ=60;FQ=167;PV4=0.82,8.1e-22,0.13,0.29 GT:PL:GQ 0/1:194,0,255:99 chr2 242179134 . G A 225 . DP=115;VDB=0.0398;AF1=0.5;AC1=1;DP4=34,18,33,25;MQ=59;FQ=225;PV4=0.44,0.067,0.31,1 GT:PL:GQ 0/1:255,0,255:99 chr2 242192848 . T C 169 . DP=78;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,18,20,19;MQ=60;FQ=172;PV4=1,7.5e-29,1,1 GT:PL:GQ 0/1:199,0,255:99 chr2 242196324 . T C 15.1 . DP=7;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=18.1;PV4=1,8.9e-05,1,1 GT:PL:GQ 0/1:45,0,78:48 chr2 242203916 . A C 222 . DP=21;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,15,6;MQ=58;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr2 242206956 . C T 222 . DP=66;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,46,18;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr2 242255830 . C T 119 . DP=65;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,12,18,20;MQ=60;FQ=122;PV4=0.8,7.1e-28,1,1 GT:PL:GQ 0/1:149,0,255:99 chr2 242259614 . G A 222 . DP=46;VDB=0.0298;AF1=1;AC1=2;DP4=1,0,33,9;MQ=58;FQ=-127;PV4=1,0.3,1,0.25 GT:PL:GQ 1/1:255,100,0:99 chr2 242283071 . C T 41.8 . DP=2;VDB=0.0174;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:73,6,0:10 chr2 242283094 . A G 96 . DP=12;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:129,30,0:57 chr2 242289663 . CATT CATTATT 214 . INDEL;DP=24;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,17;MQ=48;FQ=-85.5 GT:PL:GQ 1/1:255,51,0:99 chr2 242312572 . G A 135 . DP=27;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,5,9,1;MQ=60;FQ=138;PV4=0.35,1,1,0.31 GT:PL:GQ 0/1:165,0,255:99 chr2 242396033 . A G 129 . DP=23;VDB=0.0011;AF1=0.5;AC1=1;DP4=12,0,11,0;MQ=60;FQ=131;PV4=1,0.41,1,0.34 GT:PL:GQ 0/1:159,0,166:99 chr2 242396087 . A T 225 . DP=83;VDB=0.0345;AF1=0.5;AC1=1;DP4=30,14,20,15;MQ=60;FQ=225;PV4=0.35,4.7e-05,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 242405021 . C T 173 . DP=132;VDB=0.0322;AF1=0.5;AC1=1;DP4=39,27,39,27;MQ=60;FQ=176;PV4=1,4.4e-40,1,1 GT:PL:GQ 0/1:203,0,255:99 chr2 242407467 . C T 36 . DP=17;VDB=0.0019;AF1=0.5;AC1=1;DP4=9,0,7,0;MQ=60;FQ=39;PV4=1,7.4e-10,1,0.26 GT:PL:GQ 0/1:66,0,156:69 chr2 242415523 . C T 34 . DP=10;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,4,0,5;MQ=60;FQ=37;PV4=1,2.2e-08,1,0.41 GT:PL:GQ 0/1:64,0,95:67 chr2 242432704 . G C 45 . DP=16;VDB=0.0118;AF1=0.5;AC1=1;DP4=8,0,6,1;MQ=60;FQ=48;PV4=0.47,1.9e-05,1,0.15 GT:PL:GQ 0/1:75,0,140:78 chr2 242433348 . A G 222 . DP=15;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,11,3;MQ=58;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr2 242443377 . G A 225 . DP=37;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,4,13,7;MQ=59;FQ=214;PV4=0.72,0.28,1,0.12 GT:PL:GQ 0/1:255,0,241:99 chr2 242447962 . G A 31.8 . DP=3;VDB=0.0214;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:63,6,0:10 chr2 242542298 . T C 3.01 . DP=6;VDB=0.0180;AF1=0.4997;AC1=1;DP4=4,0,2,0;MQ=60;FQ=4.77;PV4=1,0.0036,1,1 GT:PL:GQ 0/1:30,0,102:28 chr2 242556732 . G A 26 . DP=21;VDB=0.0053;AF1=0.5;AC1=1;DP4=8,0,12,0;MQ=60;FQ=29;PV4=1,5.6e-12,1,1 GT:PL:GQ 0/1:56,0,128:59 chr2 242557019 . G A 64 . DP=24;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,14,2,7;MQ=60;FQ=67;PV4=0.14,6.5e-06,1,0.083 GT:PL:GQ 0/1:94,0,171:97 chr2 242557028 . G C 105 . DP=21;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,13,1,7;MQ=60;FQ=108;PV4=0.38,0.13,1,0.031 GT:PL:GQ 0/1:135,0,173:99 chr2 242572846 . A G 145 . DP=72;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,20,11,16;MQ=60;FQ=148;PV4=0.46,6.4e-22,0.11,1 GT:PL:GQ 0/1:175,0,255:99 chr2 242573211 . T C 125 . DP=52;VDB=0.0393;AF1=0.5;AC1=1;DP4=16,16,8,11;MQ=59;FQ=128;PV4=0.77,5.6e-12,1,0.17 GT:PL:GQ 0/1:155,0,255:99 chr2 242577022 . C T 50 . DP=11;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,2,1,4;MQ=60;FQ=53;PV4=0.52,9.6e-05,1,1 GT:PL:GQ 0/1:80,0,136:83 chr2 242590338 . A G 110 . DP=61;VDB=0.0345;AF1=0.5;AC1=1;DP4=34,2,20,4;MQ=60;FQ=113;PV4=0.21,4.8e-23,0.11,1 GT:PL:GQ 0/1:140,0,246:99 chr2 242593114 . A G 225 . DP=39;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,15,5,15;MQ=60;FQ=164;PV4=0.2,0.036,1,1 GT:PL:GQ 0/1:255,0,191:99 chr2 242594622 . C T 90 . DP=13;VDB=0.0099;AF1=0.5;AC1=1;DP4=4,2,6,0;MQ=60;FQ=93;PV4=0.45,0.43,1,1 GT:PL:GQ 0/1:120,0,149:99 chr2 242606036 . G C 225 . DP=86;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,28,17,16;MQ=59;FQ=225;PV4=0.66,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 242610253 . T C 170 . DP=27;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,14,3,8;MQ=60;FQ=169;PV4=0.28,0.13,1,0.5 GT:PL:GQ 0/1:200,0,198:99 chr2 242610773 . T A 225 . DP=76;VDB=0.0345;AF1=0.5;AC1=1;DP4=27,17,20,10;MQ=60;FQ=225;PV4=0.81,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 242613089 . A G 88 . DP=5;VDB=0.0332;AF1=0.5006;AC1=1;DP4=1,0,2,2;MQ=60;FQ=-3.53;PV4=1,0.094,1,0.34 GT:PL:GQ 0/1:118,0,26:29 chr2 242613133 . T G 4.14 . DP=3;VDB=0.0102;AF1=0.5014;AC1=1;DP4=1,0,1,1;MQ=60;FQ=-6.5;PV4=1,0.12,1,0.43 GT:PL:GQ 0/1:32,0,22:27 chr2 242618050 . A G 161 . DP=52;VDB=0.0190;AF1=0.5;AC1=1;DP4=10,17,8,17;MQ=60;FQ=164;PV4=0.78,1.8e-14,1,1 GT:PL:GQ 0/1:191,0,255:99 chr2 242622326 . T C 193 . DP=19;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,8,6,4;MQ=60;FQ=142;PV4=0.057,1,1,1 GT:PL:GQ 0/1:223,0,169:99 chr2 242658779 . A T 97 . DP=10;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:130,30,0:57 chr2 242662761 . T C 219 . DP=12;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,10;MQ=60;FQ=-63 GT:PL:GQ 1/1:252,36,0:69 chr2 242674959 . T G 135 . DP=17;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,9;MQ=60;FQ=-63 GT:PL:GQ 1/1:168,36,0:69 chr2 242680366 . A G 10.4 . DP=31;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,5,4,4;MQ=59;FQ=13.2;PV4=0.37,1.2e-05,1,1 GT:PL:GQ 0/1:40,0,225:42 chr2 242680375 . C T 79 . DP=29;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,7,7,4;MQ=60;FQ=82;PV4=1,5.8e-06,1,0.45 GT:PL:GQ 0/1:109,0,255:99 chr2 242680430 . A G 70 . DP=32;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,10,7,4;MQ=60;FQ=73;PV4=0.71,7.9e-10,1,0.1 GT:PL:GQ 0/1:100,0,255:99 chr2 242684115 . T C 12.3 . DP=17;VDB=0.0081;AF1=0.5;AC1=1;DP4=11,1,4,1;MQ=60;FQ=15.1;PV4=0.51,2e-08,1,0.35 GT:PL:GQ 0/1:42,0,200:44 chr2 242684394 . G C 21.3 . DP=10;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:54,15,0:26 chr2 242688203 . C T 210 . DP=61;VDB=0.0271;AF1=0.5;AC1=1;DP4=20,13,18,6;MQ=59;FQ=213;PV4=0.39,0.009,0.41,1 GT:PL:GQ 0/1:240,0,255:99 chr2 242688292 . C T 167 . DP=69;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,15,16,18;MQ=59;FQ=170;PV4=0.81,3e-11,1,0.36 GT:PL:GQ 0/1:197,0,255:99 chr2 242688366 . C T 224 . DP=45;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,17,3,22;MQ=58;FQ=213;PV4=1,0.42,0.057,0.4 GT:PL:GQ 0/1:254,0,240:99 chr2 242688434 . T C 33 . DP=11;VDB=0.0019;AF1=0.5;AC1=1;DP4=1,5,1,3;MQ=58;FQ=36;PV4=1,0.0002,0.12,0.44 GT:PL:GQ 0/1:63,0,150:66 chr2 242688442 . TCCC TCCCC 7.35 . INDEL;DP=6;VDB=0.0001;AF1=0.5;AC1=1;DP4=1,3,1,1;MQ=56;FQ=9.94;PV4=1,1,0.089,1 GT:PL:GQ 0/1:44,0,92:45 chr2 242688672 . C T 140 . DP=63;VDB=0.0345;AF1=0.5;AC1=1;DP4=28,3,27,5;MQ=60;FQ=143;PV4=0.71,7.4e-21,0.16,0.32 GT:PL:GQ 0/1:170,0,255:99 chr2 242688870 . T C 52 . DP=46;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,28,2,13;MQ=59;FQ=55;PV4=0.26,2.3e-13,0.084,1 GT:PL:GQ 0/1:82,0,212:85 chr2 242690745 . C T 219 . DP=48;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,18,3,20;MQ=59;FQ=221;PV4=0.7,1,0.16,1 GT:PL:GQ 0/1:249,0,255:99 chr2 242793273 . A G 46 . DP=25;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,3,7,1;MQ=58;FQ=49;PV4=1,2.7e-09,1,0.086 GT:PL:GQ 0/1:76,0,232:79 chr2 242793559 . T C 28 . DP=5;VDB=0.0147;AF1=0.5;AC1=1;DP4=0,3,0,2;MQ=60;FQ=31;PV4=1,0.37,1,0.31 GT:PL:GQ 0/1:58,0,87:61 chr2 242813124 . T C 222 . DP=47;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,23,22;MQ=60;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr2 242814009 . G A 132 . DP=34;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,6,7,15;MQ=59;FQ=135;PV4=0.47,5.7e-10,0.24,0.49 GT:PL:GQ 0/1:162,0,201:99 chr2 242839363 . G C 225 . DP=68;VDB=0.0345;AF1=0.5;AC1=1;DP4=20,10,32,5;MQ=60;FQ=225;PV4=0.077,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr2 242839614 . T G 57 . DP=17;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,7,0,10;MQ=60;FQ=60;PV4=1,1.4e-08,1,1 GT:PL:GQ 0/1:87,0,124:90 chr2 242946515 . C T 105 . DP=33;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,4,9,5;MQ=45;FQ=108;PV4=0.45,4.5e-10,1,0.19 GT:PL:GQ 0/1:135,0,212:99 chr3 239313 . CGGGGGGGG CGGGGGGGGG 25.6 . INDEL;DP=11;VDB=0.0033;AF1=1;AC1=2;DP4=1,0,5,4;MQ=60;FQ=-51.5;PV4=1,1,1,0.29 GT:PL:GQ 1/1:66,17,0:30 chr3 361508 . C T 62 . DP=23;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,9,5,5;MQ=60;FQ=65;PV4=0.18,5.7e-12,1,0.24 GT:PL:GQ 0/1:92,0,214:95 chr3 367757 . G C 225 . DP=116;VDB=0.0392;AF1=0.5;AC1=1;DP4=32,32,26,24;MQ=60;FQ=225;PV4=0.85,0.37,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 367825 . G T 225 . DP=105;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,38,13,40;MQ=60;FQ=225;PV4=1,0.0002,1,0.015 GT:PL:GQ 0/1:255,0,255:99 chr3 370051 . C T 142 . DP=41;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,20,0,18;MQ=59;FQ=145;PV4=0.49,0.15,1,0.25 GT:PL:GQ 0/1:172,0,241:99 chr3 386520 . C T 25 . DP=3;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:57,9,0:15 chr3 391100 . A G 178 . DP=104;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,87,7;MQ=59;FQ=-282 GT:PL:GQ 1/1:211,255,0:99 chr3 403288 . G A 43.8 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:75,6,0:10 chr3 403297 . C A 137 . DP=8;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,8,0;MQ=57;FQ=-51 GT:PL:GQ 1/1:170,24,0:45 chr3 403308 . G A 62 . DP=16;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,14,0;MQ=58;FQ=-69 GT:PL:GQ 1/1:95,42,0:81 chr3 403345 . A G 57 . DP=37;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,34,0;MQ=59;FQ=-129 GT:PL:GQ 1/1:90,102,0:99 chr3 404771 . C T 79 . DP=12;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:112,36,0:69 chr3 417994 . A G 196 . DP=36;VDB=0.0271;AF1=0.5;AC1=1;DP4=12,1,19,2;MQ=60;FQ=143;PV4=1,0.48,1,1 GT:PL:GQ 0/1:226,0,170:99 chr3 418089 . C T 225 . DP=61;VDB=0.0384;AF1=0.5;AC1=1;DP4=20,13,17,11;MQ=60;FQ=225;PV4=1,0.18,1,0.48 GT:PL:GQ 0/1:255,0,255:99 chr3 418291 . C T 108 . DP=18;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,9,0,9;MQ=60;FQ=111;PV4=1,0.077,1,0.096 GT:PL:GQ 0/1:138,0,155:99 chr3 439963 . A G 222 . DP=76;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,43,32;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr3 440028 . T C 222 . DP=74;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,24,46;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr3 440088 . T A 111 . DP=30;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,25;MQ=60;FQ=-108 GT:PL:GQ 1/1:144,81,0:99 chr3 1320271 . G A 178 . DP=27;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,22;MQ=58;FQ=-108 GT:PL:GQ 1/1:211,81,0:99 chr3 1339680 . Ggtttttgtttttgtttttgtttt Ggtttttgtttttgtttt 128 . INDEL;DP=17;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,0,11;MQ=33;FQ=-67.5 GT:PL:GQ 1/1:169,33,0:63 chr3 1413903 . T A 9.52 . DP=9;VDB=0.0140;AF1=0.5;AC1=1;DP4=3,1,4,0;MQ=60;FQ=12.3;PV4=1,1.6e-05,1,0.42 GT:PL:GQ 0/1:39,0,117:41 chr3 1415195 . C T 4.13 . DP=16;VDB=0.0008;AF1=0.4998;AC1=1;DP4=8,0,8,0;MQ=59;FQ=6.2;PV4=1,4.3e-13,0.17,1 GT:PL:GQ 0/1:32,0,149:31 chr3 1415811 . TAAAACAAAACAA TAAAACAA 91.5 . INDEL;DP=23;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,5,0,7;MQ=49;FQ=94.5;PV4=1,0.0048,0.0045,0.29 GT:PL:GQ 0/1:129,0,186:99 chr3 1424850 . T G 74 . DP=139;VDB=0.0365;AF1=0.5;AC1=1;DP4=45,32,34,27;MQ=59;FQ=77;PV4=0.86,9.6e-71,0.051,1 GT:PL:GQ 0/1:104,0,255:99 chr3 1444243 . A G 20 . DP=22;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,9,0,7;MQ=59;FQ=23;PV4=0.26,0.00058,1,1 GT:PL:GQ 0/1:50,0,208:53 chr3 2777622 . A G 197 . DP=125;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,53,61;MQ=60;FQ=-282 GT:PL:GQ 1/1:230,255,0:99 chr3 2908537 . A C 115 . DP=72;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,10,22,17;MQ=60;FQ=118;PV4=0.46,9.5e-32,1,1 GT:PL:GQ 0/1:145,0,255:99 chr3 2969052 . C T 225 . DP=63;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,23,3,28;MQ=59;FQ=225;PV4=0.18,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 3080527 . C T 24 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:56,9,0:15 chr3 3081750 . A T 222 . DP=57;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,26;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr3 3081825 . T C 222 . DP=46;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,18,26;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr3 3084147 . A G 183 . DP=41;VDB=0.0140;AF1=0.5;AC1=1;DP4=6,13,1,19;MQ=59;FQ=186;PV4=0.044,1,1,0.33 GT:PL:GQ 0/1:213,0,255:99 chr3 3095404 . G A 181 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,0,14,1;MQ=60;FQ=99;PV4=1,1,1,1 GT:PL:GQ 0/1:211,0,126:99 chr3 3115478 . T C 137 . DP=60;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,21,7,24;MQ=59;FQ=140;PV4=1,2.7e-22,0.089,0.35 GT:PL:GQ 0/1:167,0,255:99 chr3 3115514 . C A 52 . DP=40;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,18,2,20;MQ=59;FQ=55;PV4=0.49,1.3e-25,0.099,1 GT:PL:GQ 0/1:82,0,175:85 chr3 3116438 . G A 158 . DP=97;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,35,24,16;MQ=60;FQ=161;PV4=0.042,4.6e-32,0.12,0.3 GT:PL:GQ 0/1:188,0,255:99 chr3 3118142 . G T 129 . DP=44;VDB=0.0244;AF1=0.5;AC1=1;DP4=15,9,13,7;MQ=58;FQ=132;PV4=1,8.7e-15,1,1 GT:PL:GQ 0/1:159,0,255:99 chr3 3137155 . ATTTTTTTTTT ATTTTTTTTTTT 26.5 . INDEL;DP=13;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,3,7;MQ=60;FQ=-64.5 GT:PL:GQ 1/1:67,30,0:52 chr3 3139957 . T C 137 . DP=61;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,20,7,28;MQ=60;FQ=140;PV4=1,2.3e-22,1,1 GT:PL:GQ 0/1:167,0,255:99 chr3 3143267 . G C 194 . DP=13;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:227,36,0:69 chr3 3170792 . C T 203 . DP=29;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,9,20;MQ=60;FQ=-114 GT:PL:GQ 1/1:236,87,0:99 chr3 3170910 . A G 140 . DP=7;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:173,18,0:33 chr3 3171460 . C T 222 . DP=35;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,32,3;MQ=59;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr3 3171502 . C A 134 . DP=70;VDB=0.0392;AF1=0.5;AC1=1;DP4=29,10,24,6;MQ=59;FQ=137;PV4=0.77,9.4e-19,0.43,0.39 GT:PL:GQ 0/1:164,0,255:99 chr3 3171713 . GCC GCCTGACTCC 162 . INDEL;DP=22;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,2,13;MQ=35;FQ=-79.5 GT:PL:GQ 1/1:203,45,0:87 chr3 3189279 . A G 112 . DP=36;VDB=0.0365;AF1=1;AC1=2;DP4=1,1,13,20;MQ=60;FQ=-58;PV4=1,1.1e-08,1,1 GT:PL:GQ 1/1:145,31,0:59 chr3 3189398 . A G 206 . DP=18;VDB=0.0244;AF1=0.5;AC1=1;DP4=1,6,4,7;MQ=59;FQ=114;PV4=0.6,1,0.22,1 GT:PL:GQ 0/1:236,0,141:99 chr3 3192524 . ATAACT ATAACTAACT 191 . INDEL;DP=23;VDB=0.0066;AF1=0.5;AC1=1;DP4=14,0,7,1;MQ=57;FQ=194;PV4=0.36,1,0.006,1 GT:PL:GQ 0/1:229,0,255:99 chr3 3196273 . ATTTTTTTT ATTTTTTT 4.5 . INDEL;DP=6;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:43,18,0:17 chr3 3197871 . T C 193 . DP=9;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,6,3;MQ=60;FQ=-54 GT:PL:GQ 1/1:226,27,0:51 chr3 3215954 . A G 154 . DP=72;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,12,56;MQ=60;FQ=-229 GT:PL:GQ 1/1:187,202,0:99 chr3 3221430 . C T 43 . DP=22;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,7,1,6;MQ=60;FQ=46;PV4=0.33,3.1e-05,1,1 GT:PL:GQ 0/1:73,0,241:76 chr3 3886580 . A G 200 . DP=103;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,57,43;MQ=60;FQ=-282 GT:PL:GQ 1/1:233,255,0:99 chr3 3887876 . T C 222 . DP=120;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,64,54;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 4403837 . A G 90 . DP=29;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,2,12,2;MQ=59;FQ=93;PV4=1,3.4e-09,0.15,1 GT:PL:GQ 0/1:120,0,216:99 chr3 4404087 . A G 59 . DP=8;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,2,1,5;MQ=57;FQ=24;PV4=1,0.0007,0.3,0.19 GT:PL:GQ 0/1:89,0,51:54 chr3 4452737 . G A 114 . DP=31;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,30;MQ=60;FQ=-120 GT:PL:GQ 1/1:147,93,0:99 chr3 4461698 . C T 222 . DP=34;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,17,17;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr3 4562667 . T G 134 . DP=49;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,42,5;MQ=59;FQ=-168 GT:PL:GQ 1/1:167,141,0:99 chr3 4687470 . GCTCTCTCTCTCTCT GCTCTCTCTCTCTCTCT 214 . INDEL;DP=15;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-67.5 GT:PL:GQ 1/1:255,33,0:63 chr3 4687548 . A G 81.5 . DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:114,12,0:21 chr3 4687577 . A G 26.8 . DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:58,6,0:10 chr3 4693656 . C T 183 . DP=13;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:216,36,0:69 chr3 4693937 . G C 164 . DP=39;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,32;MQ=60;FQ=-141 GT:PL:GQ 1/1:197,114,0:99 chr3 4694010 . A C 47.3 . DP=7;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:80,15,0:27 chr3 4703657 . T A 29 . DP=11;VDB=0.0081;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=60;FQ=32;PV4=1,1.1e-06,1,0.36 GT:PL:GQ 0/1:59,0,108:62 chr3 4712413 . G A 117 . DP=9;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,7,2;MQ=60;FQ=-54 GT:PL:GQ 1/1:150,27,0:51 chr3 4716811 . A C 118 . DP=90;VDB=0.0164;AF1=0.5;AC1=1;DP4=40,11,29,9;MQ=59;FQ=121;PV4=1,2.4e-30,0.05,1 GT:PL:GQ 0/1:148,0,255:99 chr3 4722956 . A G 172 . DP=104;VDB=0.0400;AF1=0.5;AC1=1;DP4=33,11,41,15;MQ=59;FQ=175;PV4=1,9.5e-37,0.43,0.39 GT:PL:GQ 0/1:202,0,255:99 chr3 4725619 . CAA CA 134 . INDEL;DP=17;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,15;MQ=58;FQ=-79.5 GT:PL:GQ 1/1:175,45,0:87 chr3 4738774 . A G 57 . DP=13;VDB=0.0003;AF1=0.5;AC1=1;DP4=4,0,9,0;MQ=60;FQ=43.9;PV4=1,0.0061,1,0.45 GT:PL:GQ 0/1:87,0,71:74 chr3 4738999 . Ggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt GGTGTGTgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 70.4 . INDEL;DP=29;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,3;MQ=52;FQ=-43.5 GT:PL:GQ 1/1:110,9,0:16 chr3 4767262 . T C 222 . DP=78;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,24,48;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr3 4817057 . T C 222 . DP=63;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,24,39;MQ=60;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr3 4829732 . A G 141 . DP=116;VDB=0.0365;AF1=0.5;AC1=1;DP4=36,28,31,16;MQ=60;FQ=144;PV4=0.33,5.6e-41,1,1 GT:PL:GQ 0/1:171,0,255:99 chr3 4842231 . C T 170 . DP=91;VDB=0.0365;AF1=0.5;AC1=1;DP4=27,15,33,15;MQ=60;FQ=173;PV4=0.66,2.4e-24,0.18,1 GT:PL:GQ 0/1:200,0,255:99 chr3 4856180 . T C 176 . DP=24;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,4,18;MQ=60;FQ=-93 GT:PL:GQ 1/1:209,66,0:99 chr3 4856234 . G A 59 . DP=14;VDB=0.0042;AF1=0.5;AC1=1;DP4=2,3,0,9;MQ=60;FQ=62;PV4=0.11,2.7e-06,1,0.36 GT:PL:GQ 0/1:89,0,124:92 chr3 4856650 . T C 225 . DP=39;VDB=0.0025;AF1=0.5;AC1=1;DP4=12,5,18,4;MQ=60;FQ=225;PV4=0.46,0.26,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 4856993 . C G 53.1 . DP=6;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:86,18,0:33 chr3 4859725 . G A 218 . DP=41;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,31,7;MQ=59;FQ=-141 GT:PL:GQ 1/1:251,114,0:99 chr3 4927281 . T C 11.3 . DP=11;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,0,4,0;MQ=60;FQ=14.2;PV4=1,2.3e-05,1,1 GT:PL:GQ 0/1:41,0,130:43 chr3 4927308 . A G 151 . DP=19;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,16,3;MQ=60;FQ=-84 GT:PL:GQ 1/1:184,57,0:99 chr3 4940658 . cagagagagagagagagagagagagagaga cagagagagagagagagagagagaga 71.2 . INDEL;DP=5;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:110,6,0:10 chr3 4942300 . T C 74 . DP=117;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,33,23,27;MQ=60;FQ=77;PV4=0.85,8.5e-44,0.14,1 GT:PL:GQ 0/1:104,0,255:99 chr3 4942430 . G A 45 . DP=32;VDB=0.0099;AF1=0.5;AC1=1;DP4=3,10,1,17;MQ=60;FQ=48;PV4=0.28,6.6e-13,1,1 GT:PL:GQ 0/1:75,0,209:78 chr3 4942432 . C G 59 . DP=28;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,17,2,8;MQ=60;FQ=62;PV4=0.28,9.8e-19,1,0.2 GT:PL:GQ 0/1:89,0,221:92 chr3 5241223 . C T 222 . DP=55;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,38,14;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr3 5241309 . C A 222 . DP=75;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,23,51;MQ=60;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr3 6828364 . A G 222 . DP=100;VDB=0.0392;AF1=1;AC1=2;DP4=1,0,44,50;MQ=60;FQ=-282;PV4=0.47,0.021,1,0.23 GT:PL:GQ 1/1:255,255,0:99 chr3 6903601 . A G 143 . DP=31;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,5,26;MQ=59;FQ=-120 GT:PL:GQ 1/1:176,93,0:99 chr3 6904812 . gtttttttttt gTtttttttttt 3.25 . INDEL;DP=83;VDB=0.0392;AF1=0.5006;AC1=1;DP4=4,26,9,25;MQ=60;FQ=-9.33;PV4=0.23,1,1,1 GT:PL:GQ 0/1:38,0,26:32 chr3 7456675 . C T 59 . DP=13;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,11,0;MQ=58;FQ=-60 GT:PL:GQ 1/1:92,33,0:63 chr3 7494245 . Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgt Ttgtgtgtgtgtgtgtgtgtgtgtgtgt 51.5 . INDEL;DP=6;VDB=0.0006;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=44.1;PV4=1,0.47,1,1 GT:PL:GQ 0/1:89,0,79:82 chr3 7494417 . A T 112 . DP=29;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,12,6,5;MQ=59;FQ=115;PV4=0.22,0.00035,1,0.38 GT:PL:GQ 0/1:142,0,236:99 chr3 7649591 . C A 36 . DP=14;VDB=0.0081;AF1=0.5;AC1=1;DP4=5,1,6,1;MQ=60;FQ=39;PV4=1,2e-05,1,0.097 GT:PL:GQ 0/1:66,0,128:69 chr3 7649747 . a aT 199 . INDEL;DP=24;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,7,3,8;MQ=60;FQ=201;PV4=0.67,1,1,1 GT:PL:GQ 0/1:237,0,242:99 chr3 7678010 . G A 169 . DP=68;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,23,11,19;MQ=60;FQ=172;PV4=1,1.1e-23,0.14,0.058 GT:PL:GQ 0/1:199,0,255:99 chr3 7678090 . G A 143 . DP=31;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,14,2,8;MQ=58;FQ=146;PV4=0.68,0.062,0.31,0.19 GT:PL:GQ 0/1:173,0,255:99 chr3 8299387 . C A 35 . DP=7;VDB=0.0041;AF1=0.5;AC1=1;DP4=1,2,3,1;MQ=49;FQ=37.5;PV4=0.49,0.019,0.026,0.37 GT:PL:GQ 0/1:65,0,74:67 chr3 8299641 . G C 54 . DP=27;VDB=0.0042;AF1=0.5;AC1=1;DP4=6,7,8,1;MQ=49;FQ=57;PV4=0.074,8.4e-06,1,0.19 GT:PL:GQ 0/1:84,0,187:87 chr3 8543713 . GTT GTTT 214 . INDEL;DP=44;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,23;MQ=59;FQ=-164 GT:PL:GQ 1/1:255,129,0:99 chr3 8556671 . T G 121 . DP=53;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,14,8,18;MQ=60;FQ=124;PV4=0.56,4e-18,1,1 GT:PL:GQ 0/1:151,0,255:99 chr3 8609071 . G A 225 . DP=42;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,4,14,7;MQ=59;FQ=225;PV4=0.48,0.19,1,0.21 GT:PL:GQ 0/1:255,0,255:99 chr3 8667896 . T C 222 . DP=169;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,95,71;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 8669361 . C A 225 . DP=53;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,17,13,10;MQ=60;FQ=225;PV4=0.4,0.13,1,0.015 GT:PL:GQ 0/1:255,0,255:99 chr3 8669367 . TGGGG TGGG 214 . INDEL;DP=50;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,23,25;MQ=60;FQ=-179 GT:PL:GQ 1/1:255,144,0:99 chr3 8675778 . T C 13 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr3 8676204 . A G 222 . DP=67;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,26,38;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr3 8676945 . T C 222 . DP=38;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,26,11;MQ=59;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr3 8686368 . T C 143 . DP=153;VDB=0.0244;AF1=0.5;AC1=1;DP4=42,44,36,29;MQ=60;FQ=146;PV4=0.51,1.4e-50,1,1 GT:PL:GQ 0/1:173,0,255:99 chr3 8757311 . G C 41 . DP=17;VDB=0.0099;AF1=0.5;AC1=1;DP4=8,3,5,1;MQ=60;FQ=44;PV4=1,9e-07,1,1 GT:PL:GQ 0/1:71,0,231:74 chr3 8775661 . C T 225 . DP=90;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,21,24,21;MQ=60;FQ=225;PV4=0.83,0.13,1,0.065 GT:PL:GQ 0/1:255,0,255:99 chr3 8809184 . G A 131 . DP=99;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,31,21,20;MQ=60;FQ=134;PV4=0.68,1.1e-20,1,0.12 GT:PL:GQ 0/1:161,0,255:99 chr3 8809703 . G A 171 . DP=35;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,18,3,10;MQ=59;FQ=174;PV4=0.65,1,0.1,0.21 GT:PL:GQ 0/1:201,0,251:99 chr3 8931984 . A C 8.64 . DP=24;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,2,8,1;MQ=60;FQ=11.3;PV4=1,1.5e-20,1,1 GT:PL:GQ 0/1:38,0,239:40 chr3 8955240 . T C 190 . DP=23;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,1,10,2;MQ=60;FQ=154;PV4=1,0.3,1,1 GT:PL:GQ 0/1:220,0,181:99 chr3 8955389 . C T 106 . DP=23;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,9,4,7;MQ=60;FQ=109;PV4=0.67,3e-05,1,0.077 GT:PL:GQ 0/1:136,0,227:99 chr3 9005078 . C T 162 . DP=41;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,4,14,13;MQ=60;FQ=162;PV4=0.33,6e-12,1,0.069 GT:PL:GQ 0/1:192,0,193:99 chr3 9027704 . A G 64 . DP=19;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,7,1,9;MQ=60;FQ=67;PV4=0.58,1.5e-08,1,1 GT:PL:GQ 0/1:94,0,181:97 chr3 9034558 . C T 161 . DP=76;VDB=0.0322;AF1=0.5;AC1=1;DP4=24,16,26,10;MQ=60;FQ=164;PV4=0.33,2e-29,0.15,0.26 GT:PL:GQ 0/1:191,0,255:99 chr3 9036010 . T G 175 . DP=55;VDB=0.0298;AF1=0.5;AC1=1;DP4=21,7,14,13;MQ=60;FQ=178;PV4=0.097,5.9e-14,1,1 GT:PL:GQ 0/1:205,0,255:99 chr3 9066853 . T C 222 . DP=38;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,12;MQ=59;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr3 9069747 . A G 222 . DP=51;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,35,13;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr3 9069873 . A G 149 . DP=65;VDB=0.0398;AF1=0.5;AC1=1;DP4=16,16,13,18;MQ=60;FQ=152;PV4=0.62,1.5e-26,1,0.26 GT:PL:GQ 0/1:179,0,255:99 chr3 9089254 . C G 222 . DP=25;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,20;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr3 9091151 . C G 102 . DP=56;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,18,11,15;MQ=60;FQ=105;PV4=0.79,4.4e-27,1,1 GT:PL:GQ 0/1:132,0,255:99 chr3 9099989 . A G 84 . DP=43;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,11,11,4;MQ=60;FQ=87;PV4=0.51,3.3e-10,1,1 GT:PL:GQ 0/1:114,0,255:99 chr3 9102112 . ctttttttttttttttt cTTTTtttttttttttttttt 11.5 . INDEL;DP=10;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,1;MQ=47;FQ=-40.5 GT:PL:GQ 1/1:50,6,0:9 chr3 9122948 . A G 222 . DP=47;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,21,25;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr3 9406704 . G A 74 . DP=25;VDB=0.0081;AF1=0.5;AC1=1;DP4=12,0,12,1;MQ=60;FQ=77;PV4=1,2.6e-12,1,1 GT:PL:GQ 0/1:104,0,165:99 chr3 9406836 . T C 225 . DP=84;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,22,23,15;MQ=59;FQ=225;PV4=0.38,1,0.24,1 GT:PL:GQ 0/1:255,0,255:99 chr3 9407022 . T C 96 . DP=51;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,17,6,21;MQ=59;FQ=99;PV4=1,2.6e-23,1,1 GT:PL:GQ 0/1:126,0,255:99 chr3 9425911 . G A 41 . DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,4,18,2;MQ=60;FQ=44;PV4=0.67,4.8e-21,1,0.063 GT:PL:GQ 0/1:71,0,255:74 chr3 9489767 . T C 101 . DP=23;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,2,20;MQ=59;FQ=-93 GT:PL:GQ 1/1:134,66,0:99 chr3 9495385 . A G 123 . DP=57;VDB=0.0140;AF1=0.5;AC1=1;DP4=22,3,26,4;MQ=60;FQ=126;PV4=1,4e-25,1,1 GT:PL:GQ 0/1:153,0,255:99 chr3 9547950 . G C 168 . DP=36;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,29;MQ=60;FQ=-129 GT:PL:GQ 1/1:201,102,0:99 chr3 9547959 . C T 184 . DP=30;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,5,25;MQ=60;FQ=-117 GT:PL:GQ 1/1:217,90,0:99 chr3 9727002 . G C 124 . DP=10;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,4,1,5;MQ=60;FQ=71;PV4=1,0.3,1,1 GT:PL:GQ 0/1:154,0,98:99 chr3 9730284 . A G 20 . DP=7;VDB=0.0224;AF1=0.5;AC1=1;DP4=2,2,2,1;MQ=60;FQ=23;PV4=1,0.00022,1,1 GT:PL:GQ 0/1:50,0,121:53 chr3 9730522 . G A 152 . DP=79;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,24,14,12;MQ=60;FQ=155;PV4=0.45,2.6e-11,0.11,1 GT:PL:GQ 0/1:182,0,255:99 chr3 9739329 . C T 58 . DP=46;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,1,19,3;MQ=59;FQ=61;PV4=1,8.3e-18,0.22,0.34 GT:PL:GQ 0/1:88,0,190:91 chr3 9743398 . TGGAGGGAGGGAGG TGGAGGGAGG 214 . INDEL;DP=32;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,26,6;MQ=56;FQ=-131 GT:PL:GQ 1/1:255,96,0:99 chr3 9757086 . C G 186 . DP=103;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,23,28,25;MQ=60;FQ=189;PV4=0.84,5.5e-24,0.093,1 GT:PL:GQ 0/1:216,0,255:99 chr3 9757754 . G A 118 . DP=25;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,7,4,9;MQ=60;FQ=121;PV4=0.69,3e-05,1,1 GT:PL:GQ 0/1:148,0,228:99 chr3 9768336 . C G 225 . DP=86;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,32,12,24;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 9769008 . A T 151 . DP=68;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,17,12,20;MQ=60;FQ=154;PV4=0.33,6.2e-20,1,1 GT:PL:GQ 0/1:181,0,255:99 chr3 9799113 . A G 90 . DP=23;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,6,8,6;MQ=60;FQ=93;PV4=0.4,7.9e-13,1,1 GT:PL:GQ 0/1:120,0,197:99 chr3 9803126 . A G 129 . DP=12;VDB=0.0014;AF1=0.5;AC1=1;DP4=4,1,4,3;MQ=60;FQ=107;PV4=0.58,0.043,1,0.0044 GT:PL:GQ 0/1:159,0,134:99 chr3 9829226 . A C 41 . DP=16;VDB=0.0042;AF1=0.5;AC1=1;DP4=8,0,8,0;MQ=60;FQ=44;PV4=1,1.1e-07,1,0.27 GT:PL:GQ 0/1:71,0,145:74 chr3 9841989 . A G 214 . DP=12;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,2,10;MQ=60;FQ=-63 GT:PL:GQ 1/1:247,36,0:69 chr3 9852059 . CGA CGATGA 45.2 . INDEL;DP=2;VDB=0.0173;AF1=1;AC1=2;DP4=0,0,2,0;MQ=47;FQ=-40.5 GT:PL:GQ 1/1:84,6,0:10 chr3 9859456 . C G 153 . DP=29;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,17;MQ=60;FQ=-114 GT:PL:GQ 1/1:186,87,0:99 chr3 9867625 . C T 222 . DP=149;VDB=0.0322;AF1=1;AC1=2;DP4=0,1,56,86;MQ=59;FQ=-282;PV4=1,1,0.43,1 GT:PL:GQ 1/1:255,255,0:99 chr3 9870857 . G A 213 . DP=88;VDB=0.0392;AF1=1;AC1=2;DP4=2,0,32,52;MQ=60;FQ=-221;PV4=0.15,2.2e-05,1,1 GT:PL:GQ 1/1:246,194,0:99 chr3 9871030 . T G 172 . DP=20;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,4,16;MQ=60;FQ=-87 GT:PL:GQ 1/1:205,60,0:99 chr3 9874670 . G A 179 . DP=13;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,12,1;MQ=60;FQ=-66 GT:PL:GQ 1/1:212,39,0:75 chr3 9876301 . G T 104 . DP=42;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,27,4;MQ=60;FQ=-120 GT:PL:GQ 1/1:137,93,0:99 chr3 9896351 . A G 151 . DP=33;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,8,24;MQ=59;FQ=-123 GT:PL:GQ 1/1:184,96,0:99 chr3 9932337 . G C 169 . DP=10;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:202,30,0:57 chr3 9934605 . T C 188 . DP=67;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,39,23;MQ=60;FQ=-214 GT:PL:GQ 1/1:221,187,0:99 chr3 9944167 . G A 25 . DP=6;VDB=0.0254;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=25.9;PV4=1,7e-06,1,0.48 GT:PL:GQ 0/1:55,0,57:56 chr3 9944937 . G T 222 . DP=19;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,13,6;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr3 9947997 . C T,G 136 . DP=12;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,11,0;MQ=58;FQ=-57 GT:PL:GQ 1/1:169,30,0,160,10,157:57 chr3 9952706 . A G 222 . DP=54;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,31,23;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr3 9952788 . T C 222 . DP=64;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,39,23;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr3 9956279 . G A 222 . DP=79;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,31,44;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr3 9957455 . C T 168 . DP=15;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,10,5;MQ=60;FQ=-72 GT:PL:GQ 1/1:201,45,0:87 chr3 9959713 . C T 174 . DP=95;VDB=0.0398;AF1=0.5;AC1=1;DP4=22,27,16,28;MQ=60;FQ=177;PV4=0.53,9.7e-18,0.15,1 GT:PL:GQ 0/1:204,0,255:99 chr3 9960070 . C T 209 . DP=30;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,18,11;MQ=60;FQ=-114 GT:PL:GQ 1/1:242,87,0:99 chr3 9962157 . T C,A 190 . DP=50;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,16;MQ=60;FQ=-171 GT:PL:GQ 1/1:223,144,0,204,108,201:99 chr3 9962767 . Tattcattcattcattcattcattcatt Tattcattcattcattcattcatt 215 . INDEL;DP=12;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,2,4;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:255,18,0:33 chr3 9965745 . C T 184 . DP=72;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,9,22,22;MQ=60;FQ=187;PV4=0.23,1.1e-16,1,1 GT:PL:GQ 0/1:214,0,255:99 chr3 9969932 . TGGGG TGG 217 . INDEL;DP=52;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,18,10,10;MQ=60;FQ=217;PV4=0.77,1.1e-07,0.11,1 GT:PL:GQ 0/1:255,0,255:99 chr3 9970031 . A G 222 . DP=40;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,18,21;MQ=59;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr3 9970158 . C T 225 . DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,9,19,7;MQ=60;FQ=225;PV4=0.54,0.33,1,0.033 GT:PL:GQ 0/1:255,0,255:99 chr3 9972493 . G A 135 . DP=43;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,6;MQ=60;FQ=-144 GT:PL:GQ 1/1:168,117,0:99 chr3 9975247 . C G 62.3 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,2,3;MQ=60;FQ=-42 GT:PL:GQ 1/1:95,15,0:27 chr3 9976159 . A G 222 . DP=49;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,33,14;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr3 9985096 . G A 137 . DP=88;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,19,16,24;MQ=59;FQ=140;PV4=0.13,5.9e-34,1,0.075 GT:PL:GQ 0/1:167,0,255:99 chr3 9991388 . G C 222 . DP=119;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,39,74;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 10028370 . C T 63 . DP=30;VDB=0.0140;AF1=0.5;AC1=1;DP4=3,14,1,11;MQ=60;FQ=66;PV4=0.62,7.2e-12,1,1 GT:PL:GQ 0/1:93,0,239:96 chr3 10030236 . T C 86 . DP=12;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,9,1;MQ=29;FQ=-57 GT:PL:GQ 1/1:119,30,0:57 chr3 10085035 . G T 64 . DP=3;VDB=0.0050;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:96,9,0:16 chr3 10088239 . G A 23 . DP=17;VDB=0.0053;AF1=0.5;AC1=1;DP4=10,2,5,0;MQ=52;FQ=26;PV4=1,1,0.00016,1 GT:PL:GQ 0/1:53,0,225:56 chr3 10088242 . G A 27 . DP=19;VDB=0.0164;AF1=0.5;AC1=1;DP4=10,3,6,0;MQ=51;FQ=30;PV4=0.52,0.31,1.7e-05,1 GT:PL:GQ 0/1:57,0,243:60 chr3 10088299 . C T 6.2 . DP=32;VDB=0.0393;AF1=0.4999;AC1=1;DP4=15,11,2,4;MQ=51;FQ=8.65;PV4=0.38,0.071,0.004,0.11 GT:PL:GQ 0/1:35,0,255:36 chr3 10089723 . G A 99 . DP=24;VDB=0.0216;AF1=0.5;AC1=1;DP4=11,5,6,2;MQ=54;FQ=102;PV4=1,0.13,5.7e-07,1 GT:PL:GQ 0/1:129,0,255:99 chr3 10089738 . A G 107 . DP=29;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,7,5,4;MQ=54;FQ=110;PV4=0.69,0.44,5.6e-09,1 GT:PL:GQ 0/1:137,0,255:99 chr3 10089749 . T C 42 . DP=28;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,8,4,4;MQ=55;FQ=45;PV4=1,4e-12,6.5e-08,0.35 GT:PL:GQ 0/1:72,0,255:75 chr3 10142949 . C T 175 . DP=80;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,42,32;MQ=57;FQ=-250 GT:PL:GQ 1/1:208,223,0:99 chr3 10188428 . T G 49 . DP=10;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:82,24,0:45 chr3 10189929 . T C 131 . DP=12;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,11;MQ=58;FQ=-60 GT:PL:GQ 1/1:164,33,0:63 chr3 10219510 . C T 163 . DP=88;VDB=0.0400;AF1=0.5;AC1=1;DP4=23,23,24,13;MQ=60;FQ=166;PV4=0.19,2.9e-23,1,1 GT:PL:GQ 0/1:193,0,255:99 chr3 10241987 . A C 61 . DP=11;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:94,30,0:57 chr3 10242243 . G A 14.7 . DP=4;VDB=0.0041;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:47,12,0:19 chr3 10251196 . A G 46.5 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:79,12,0:21 chr3 10258493 . T C 84.5 . DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:117,12,0:21 chr3 10258514 . T C 78 . DP=9;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:111,27,0:51 chr3 10258762 . G C 180 . DP=23;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,6,15;MQ=60;FQ=-90 GT:PL:GQ 1/1:213,63,0:99 chr3 10261237 . A C 88.3 . DP=5;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:121,15,0:27 chr3 10261248 . T C 37.3 . DP=5;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:70,15,0:27 chr3 10261294 . A G 207 . DP=17;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,10,2;MQ=58;FQ=-63 GT:PL:GQ 1/1:240,36,0:69 chr3 10261594 . C T 58 . DP=22;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,8,1,13;MQ=59;FQ=61;PV4=1,3.9e-12,1,1 GT:PL:GQ 0/1:88,0,123:91 chr3 10264480 . C G 218 . DP=65;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,13,50;MQ=60;FQ=-217 GT:PL:GQ 1/1:251,190,0:99 chr3 10276163 . T A 221 . DP=94;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,51,42;MQ=60;FQ=-282 GT:PL:GQ 1/1:254,255,0:99 chr3 10280753 . G A 30.8 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:62,6,0:10 chr3 10320865 . A G 177 . DP=19;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,19;MQ=60;FQ=-84 GT:PL:GQ 1/1:210,57,0:99 chr3 10328250 . A C 98 . DP=8;VDB=0.0042;AF1=0.5;AC1=1;DP4=3,0,4,1;MQ=60;FQ=45;PV4=1,0.4,1,1 GT:PL:GQ 0/1:128,0,72:75 chr3 10328453 . T A 225 . DP=52;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,19,9,18;MQ=60;FQ=225;PV4=0.55,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 10331457 . G T 85 . DP=61;VDB=0.0322;AF1=0.5;AC1=1;DP4=23,16,14,7;MQ=60;FQ=88;PV4=0.59,1e-23,1,0.37 GT:PL:GQ 0/1:115,0,255:99 chr3 10342876 . C T 131 . DP=44;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,39,2;MQ=58;FQ=-150 GT:PL:GQ 1/1:164,123,0:99 chr3 10362861 . G T 42 . DP=10;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,3,0,6;MQ=60;FQ=40.9;PV4=1,0.0001,1,1 GT:PL:GQ 0/1:72,0,70:71 chr3 10370486 . G C 225 . DP=42;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,2,15,7;MQ=60;FQ=173;PV4=0.14,1,1,1 GT:PL:GQ 0/1:255,0,200:99 chr3 10379923 . C T 222 . DP=96;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,52,38;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 10382111 . T C 180 . DP=57;VDB=0.0399;AF1=1;AC1=2;DP4=2,0,38,16;MQ=60;FQ=-134;PV4=1,0.00052,1,1 GT:PL:GQ 1/1:213,107,0:99 chr3 10382148 . G A 198 . DP=71;VDB=0.0392;AF1=1;AC1=2;DP4=1,0,44,19;MQ=60;FQ=-188;PV4=1,0.0038,1,0.26 GT:PL:GQ 1/1:231,161,0:99 chr3 10387059 . C A 225 . DP=40;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,5,18,5;MQ=60;FQ=216;PV4=0.72,1,1,0.23 GT:PL:GQ 0/1:255,0,243:99 chr3 10420184 . C T 65 . DP=17;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,8,3,6;MQ=60;FQ=68;PV4=0.21,1.5e-06,1,1 GT:PL:GQ 0/1:95,0,136:98 chr3 10443827 . G C 222 . DP=159;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,91,61;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 10967739 . T C 198 . DP=52;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,33;MQ=60;FQ=-171 GT:PL:GQ 1/1:231,144,0:99 chr3 10976876 . A G 222 . DP=20;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,18;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr3 11300707 . T C 222 . DP=44;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,39,3;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr3 11518755 . T C 222 . DP=30;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,3,23;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr3 11643465 . T C 161 . DP=13;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:194,39,0:75 chr3 11667714 . C T 222 . DP=27;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,26,1;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr3 11744544 . GAAAAAA GAAAAAAA 100 . INDEL;DP=25;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,4,16;MQ=60;FQ=-94.5 GT:PL:GQ 1/1:141,60,0:99 chr3 11744584 . C T 54.1 . DP=7;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:87,21,0:39 chr3 11874762 . G A 97 . DP=41;VDB=0.0164;AF1=0.5;AC1=1;DP4=3,19,2,16;MQ=60;FQ=100;PV4=1,1e-14,1,1 GT:PL:GQ 0/1:127,0,255:99 chr3 11880816 . C A 37 . DP=11;VDB=0.0216;AF1=0.5001;AC1=1;DP4=0,2,1,7;MQ=60;FQ=6.98;PV4=1,0.00019,1,1 GT:PL:GQ 0/1:67,0,33:36 chr3 11924613 . AGG AG 127 . INDEL;DP=18;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,15,1;MQ=30;FQ=-82.5 GT:PL:GQ 1/1:168,48,0:93 chr3 11924678 . C G 112 . DP=30;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,9,6,3;MQ=39;FQ=115;PV4=0.7,0.028,1,0.45 GT:PL:GQ 0/1:142,0,255:99 chr3 11925136 . T G 10.4 . DP=28;VDB=0.0373;AF1=0.5;AC1=1;DP4=6,14,2,5;MQ=40;FQ=13.2;PV4=1,9.1e-05,0.0012,0.36 GT:PL:GQ 0/1:40,0,255:42 chr3 12045899 . C T 48 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:80,9,0:16 chr3 12045923 . A C 52.5 . DP=5;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:85,12,0:21 chr3 12045986 . G A 156 . DP=13;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,9,3;MQ=58;FQ=-63 GT:PL:GQ 1/1:189,36,0:69 chr3 12046013 . A C 187 . DP=19;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,9,9;MQ=59;FQ=-81 GT:PL:GQ 1/1:220,54,0:99 chr3 12046076 . T C 136 . DP=16;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,2,13;MQ=56;FQ=-72 GT:PL:GQ 1/1:169,45,0:87 chr3 12046131 . A C 45 . DP=3;VDB=0.0098;AF1=1;AC1=2;DP4=0,0,1,2;MQ=44;FQ=-36 GT:PL:GQ 1/1:77,9,0:16 chr3 12046362 . G C 15.9 . DP=2;VDB=0.0139;AF1=1;AC1=2;DP4=0,0,2,0;MQ=47;FQ=-33 GT:PL:GQ 1/1:47,6,0:10 chr3 12046364 . G C 12 . DP=2;VDB=0.0139;AF1=1;AC1=2;DP4=0,0,2,0;MQ=47;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr3 12046372 . G C 4.61 . DP=2;VDB=0.0139;AF1=1;AC1=2;DP4=0,0,2,0;MQ=47;FQ=-33 GT:PL:GQ 1/1:34,6,0:5 chr3 12202866 . C G 58 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:90,9,0:16 chr3 12208652 . A G 152 . DP=18;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,3;MQ=60;FQ=-78 GT:PL:GQ 1/1:185,51,0:99 chr3 12208671 . G T 44 . DP=23;VDB=0.0384;AF1=0.5;AC1=1;DP4=9,4,8,1;MQ=60;FQ=47;PV4=0.36,2.8e-11,1,1 GT:PL:GQ 0/1:74,0,253:77 chr3 12229015 . A G 200 . DP=61;VDB=0.0216;AF1=0.5;AC1=1;DP4=17,16,11,10;MQ=60;FQ=203;PV4=1,0.42,1,1 GT:PL:GQ 0/1:230,0,255:99 chr3 12232074 . A G 222 . DP=43;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,13,30;MQ=59;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr3 12232208 . T G 35.5 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:68,12,0:21 chr3 12421089 . C T 59 . DP=10;VDB=0.0042;AF1=0.5;AC1=1;DP4=4,1,4,0;MQ=57;FQ=62;PV4=1,0.12,1,0.45 GT:PL:GQ 0/1:89,0,130:92 chr3 12537955 . T A 141 . DP=32;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,20,10;MQ=59;FQ=-117 GT:PL:GQ 1/1:174,90,0:99 chr3 12560763 . A T 108 . DP=59;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,5,34;MQ=59;FQ=-144 GT:PL:GQ 1/1:141,117,0:99 chr3 12570572 . C T 222 . DP=75;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,16,54;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr3 12573998 . T C 89 . DP=17;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,15,0;MQ=60;FQ=-72 GT:PL:GQ 1/1:122,45,0:87 chr3 12598839 . C G 61 . DP=3;VDB=0.0098;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:93,9,0:16 chr3 12613866 . T C 222 . DP=71;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,26,44;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr3 12617996 . G A 222 . DP=31;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,30,1;MQ=58;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr3 12618262 . C T 166 . DP=62;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,28,2,19;MQ=58;FQ=169;PV4=0.18,0.45,1,0.22 GT:PL:GQ 0/1:196,0,255:99 chr3 12618269 . C T 77 . DP=52;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,16,9,25;MQ=59;FQ=80;PV4=0.29,9.4e-21,0.1,1 GT:PL:GQ 0/1:107,0,197:99 chr3 12626516 . G A 171 . DP=61;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,12,16,14;MQ=60;FQ=174;PV4=1,0.00011,0.18,1 GT:PL:GQ 0/1:201,0,255:99 chr3 12645007 . C T 225 . DP=87;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,28,18,27;MQ=59;FQ=225;PV4=0.36,0.012,1,0.38 GT:PL:GQ 0/1:255,0,255:99 chr3 12650482 . T A 108 . DP=37;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,35;MQ=60;FQ=-135 GT:PL:GQ 1/1:141,108,0:99 chr3 12660291 . C T 69 . DP=43;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,18,2,19;MQ=59;FQ=72;PV4=0.66,9.5e-24,1,0.098 GT:PL:GQ 0/1:99,0,255:99 chr3 12776428 . A C 122 . DP=29;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,21;MQ=60;FQ=-108 GT:PL:GQ 1/1:155,81,0:99 chr3 12779409 . A G 222 . DP=15;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,3,12;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr3 12791172 . T C 60.5 . DP=4;VDB=0.0095;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:93,12,0:21 chr3 12810629 . ccgggactggcggg ccggg 42.4 . INDEL;DP=3;VDB=0.0181;AF1=1;AC1=2;DP4=0,0,1,2;MQ=29;FQ=-43.5 GT:PL:GQ 1/1:82,9,0:16 chr3 12810755 . G C 3.41 . DP=4;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:32,6,0:4 chr3 12838293 . G C 181 . DP=34;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,20;MQ=59;FQ=-120 GT:PL:GQ 1/1:214,93,0:99 chr3 12845158 . G A 127 . DP=14;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,11;MQ=57;FQ=-69 GT:PL:GQ 1/1:160,42,0:81 chr3 12848822 . T C 222 . DP=56;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,40,14;MQ=60;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr3 12849011 . TAAAAAAA TAAAAAA 74.5 . INDEL;DP=26;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,16;MQ=52;FQ=-94.5 GT:PL:GQ 1/1:115,60,0:99 chr3 12856856 . A G 206 . DP=24;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,8,16;MQ=60;FQ=-99 GT:PL:GQ 1/1:239,72,0:99 chr3 12857493 . C T 187 . DP=46;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,26,18;MQ=59;FQ=-159 GT:PL:GQ 1/1:220,132,0:99 chr3 12857823 . C T 216 . DP=37;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,25,12;MQ=60;FQ=-138 GT:PL:GQ 1/1:249,111,0:99 chr3 12858028 . T C 214 . DP=51;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,24,25;MQ=59;FQ=-175 GT:PL:GQ 1/1:247,148,0:99 chr3 12859004 . A C 162 . DP=44;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,31,10;MQ=60;FQ=-150 GT:PL:GQ 1/1:195,123,0:99 chr3 12875443 . G A 222 . DP=64;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,42;MQ=60;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr3 12941081 . G A 4.77 . DP=31;VDB=0.0053;AF1=0.4999;AC1=1;DP4=6,12,0,10;MQ=59;FQ=6.99;PV4=0.062,2.1e-16,1,1 GT:PL:GQ 0/1:33,0,255:33 chr3 12942408 . G A 97 . DP=33;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,6,10,3;MQ=60;FQ=100;PV4=0.7,1.9e-10,1,1 GT:PL:GQ 0/1:127,0,255:99 chr3 12942850 . GCC GC 162 . INDEL;DP=11;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,6,5;MQ=58;FQ=-67.5 GT:PL:GQ 1/1:203,33,0:63 chr3 12954868 . A G 222 . DP=41;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,27,12;MQ=59;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr3 12956531 . G A 124 . DP=21;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,19,2;MQ=59;FQ=-90 GT:PL:GQ 1/1:157,63,0:99 chr3 12976863 . T C 37.8 . DP=2;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:69,6,0:10 chr3 13359433 . G A 11.1 . DP=2;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr3 13361238 . C T 76 . DP=31;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,6,12,2;MQ=60;FQ=79;PV4=0.24,2.3e-12,1,1 GT:PL:GQ 0/1:106,0,255:99 chr3 13361287 . C T 139 . DP=40;VDB=0.0373;AF1=0.5;AC1=1;DP4=13,9,11,7;MQ=60;FQ=142;PV4=1,8.5e-11,1,0.21 GT:PL:GQ 0/1:169,0,255:99 chr3 13361391 . A G 141 . DP=45;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,16,7,12;MQ=60;FQ=144;PV4=1,1.9e-10,1,0.18 GT:PL:GQ 0/1:171,0,255:99 chr3 13364876 . G T 126 . DP=71;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,22,10,23;MQ=59;FQ=129;PV4=0.61,2e-25,1,1 GT:PL:GQ 0/1:156,0,255:99 chr3 13367406 . C T 137 . DP=31;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,10,7,9;MQ=59;FQ=140;PV4=0.72,6.8e-08,1,1 GT:PL:GQ 0/1:167,0,233:99 chr3 13368614 . G A 111 . DP=14;VDB=0.0033;AF1=0.5;AC1=1;DP4=6,1,7,0;MQ=60;FQ=113;PV4=1,1,1,1 GT:PL:GQ 0/1:141,0,148:99 chr3 13368892 . G A 153 . DP=28;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,12,3,8;MQ=59;FQ=156;PV4=1,0.055,1,1 GT:PL:GQ 0/1:183,0,230:99 chr3 13379400 . C T 111 . DP=44;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,9,13,8;MQ=60;FQ=114;PV4=1,1.5e-14,1,1 GT:PL:GQ 0/1:141,0,255:99 chr3 13383540 . A G 148 . DP=80;VDB=0.0345;AF1=0.5;AC1=1;DP4=27,11,17,23;MQ=60;FQ=151;PV4=0.013,1.8e-21,1,1 GT:PL:GQ 0/1:178,0,255:99 chr3 13395579 . C A 137 . DP=39;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,12,5,13;MQ=59;FQ=140;PV4=0.51,1.8e-10,0.15,0.17 GT:PL:GQ 0/1:167,0,255:99 chr3 13399786 . G A 202 . DP=36;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,1,11,4;MQ=60;FQ=185;PV4=0.14,0.029,1,1 GT:PL:GQ 0/1:232,0,212:99 chr3 13399948 . T C 156 . DP=82;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,28,15,25;MQ=60;FQ=159;PV4=0.64,1.1e-31,1,1 GT:PL:GQ 0/1:186,0,255:99 chr3 13407556 . T C 225 . DP=57;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,25,6,19;MQ=60;FQ=225;PV4=0.75,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 13415146 . G T 68 . DP=25;VDB=0.0042;AF1=0.5;AC1=1;DP4=12,2,9,1;MQ=60;FQ=71;PV4=1,1e-10,1,0.38 GT:PL:GQ 0/1:98,0,232:99 chr3 13419123 . TGGG TGGGG 30.5 . INDEL;DP=16;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,7,0,4;MQ=60;FQ=33.5;PV4=1,1,1,1 GT:PL:GQ 0/1:68,0,150:71 chr3 13420624 . G A 148 . DP=29;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,13,0,15;MQ=60;FQ=151;PV4=0.48,0.21,1,1 GT:PL:GQ 0/1:178,0,206:99 chr3 13421150 . C T 169 . DP=90;VDB=0.0399;AF1=0.5;AC1=1;DP4=30,22,15,20;MQ=60;FQ=172;PV4=0.2,2.2e-11,1,1 GT:PL:GQ 0/1:199,0,255:99 chr3 13421320 . T C 35 . DP=27;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,14,1,10;MQ=60;FQ=38;PV4=1,2.3e-12,1,0.42 GT:PL:GQ 0/1:65,0,204:68 chr3 13522973 . C T 123 . DP=44;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,15,7,16;MQ=60;FQ=126;PV4=0.74,1.9e-15,1,0.3 GT:PL:GQ 0/1:153,0,255:99 chr3 13523010 . T C 138 . DP=27;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,12,1,11;MQ=60;FQ=141;PV4=1,1,1,1 GT:PL:GQ 0/1:168,0,207:99 chr3 13574068 . ACCCCCCC ACCCCCC 44.5 . INDEL;DP=9;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,7;MQ=60;FQ=-61.5 GT:PL:GQ 1/1:85,27,0:51 chr3 13661047 . A T 74 . DP=10;VDB=0.0003;AF1=0.5;AC1=1;DP4=5,0,5,0;MQ=58;FQ=76.4;PV4=1,0.19,0.17,1 GT:PL:GQ 0/1:104,0,112:99 chr3 13669537 . T G 99 . DP=34;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,2,30;MQ=59;FQ=-123 GT:PL:GQ 1/1:132,96,0:99 chr3 13670481 . A G 222 . DP=59;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,25,33;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr3 13670536 . A G 202 . DP=59;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,22,36;MQ=60;FQ=-202 GT:PL:GQ 1/1:235,175,0:99 chr3 13670776 . T C 85 . DP=8;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,2,6;MQ=60;FQ=-51 GT:PL:GQ 1/1:118,24,0:45 chr3 13672392 . G C 55 . DP=23;VDB=0.0099;AF1=0.5;AC1=1;DP4=3,10,1,9;MQ=60;FQ=58;PV4=0.6,1.5e-11,1,0.5 GT:PL:GQ 0/1:85,0,233:88 chr3 13672732 . C T 33 . DP=16;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,0,9,0;MQ=60;FQ=36;PV4=1,1.9e-09,1,0.037 GT:PL:GQ 0/1:63,0,124:66 chr3 13678173 . G T 44 . DP=26;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,14,0,9;MQ=59;FQ=47;PV4=1,1.2e-09,0.1,1 GT:PL:GQ 0/1:74,0,208:77 chr3 13679044 . G A 97 . DP=33;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,2,17,1;MQ=59;FQ=100;PV4=0.57,0.0029,0.11,1 GT:PL:GQ 0/1:127,0,191:99 chr3 13679203 . G A 110 . DP=53;VDB=0.0398;AF1=0.5;AC1=1;DP4=12,13,10,17;MQ=60;FQ=113;PV4=0.58,1.7e-20,0.17,0.11 GT:PL:GQ 0/1:140,0,255:99 chr3 13679335 . C T 225 . DP=30;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,5,8,12;MQ=60;FQ=162;PV4=0.71,0.37,1,0.03 GT:PL:GQ 0/1:255,0,189:99 chr3 13916407 . G T 113 . DP=22;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,20,1;MQ=60;FQ=-90 GT:PL:GQ 1/1:146,63,0:99 chr3 14105882 . C A 28 . DP=4;VDB=0.0041;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:60,9,0:16 chr3 14106295 . C T 3.54 . DP=7;VDB=0.0030;AF1=0.4998;AC1=1;DP4=4,0,2,0;MQ=47;FQ=5.47;PV4=1,0.15,0.058,0.0008 GT:PL:GQ 0/1:31,0,89:30 chr3 14106332 . G C 101 . DP=16;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,1,6,3;MQ=51;FQ=102;PV4=0.58,7.8e-06,0.051,1 GT:PL:GQ 0/1:131,0,134:99 chr3 14106499 . G A 151 . DP=7;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:184,21,0:39 chr3 14154231 . T G 4.13 . DP=5;VDB=0.0196;AF1=0.4998;AC1=1;DP4=3,0,2,0;MQ=60;FQ=6.2;PV4=1,0.069,1,0.13 GT:PL:GQ 0/1:32,0,80:31 chr3 14173963 . G T 96 . DP=59;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,16,11,13;MQ=60;FQ=99;PV4=0.79,6.3e-28,1,0.41 GT:PL:GQ 0/1:126,0,255:99 chr3 14174146 . T C 88 . DP=17;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,8,1,4;MQ=60;FQ=91;PV4=1,1,1,1 GT:PL:GQ 0/1:118,0,200:99 chr3 14174427 . A T 140 . DP=73;VDB=0.0393;AF1=0.5;AC1=1;DP4=14,17,19,16;MQ=59;FQ=143;PV4=0.62,1.3e-19,0.091,0.16 GT:PL:GQ 0/1:170,0,255:99 chr3 14175262 . T C 225 . DP=39;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,6,9,7;MQ=60;FQ=225;PV4=0.31,0.36,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 14176446 . G A 78 . DP=11;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,4,2,5;MQ=60;FQ=62.9;PV4=0.49,5e-05,1,1 GT:PL:GQ 0/1:108,0,90:93 chr3 14187449 . G T 100 . DP=15;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,1,8,2;MQ=60;FQ=83;PV4=1,1.1e-05,1,0.39 GT:PL:GQ 0/1:130,0,110:99 chr3 14187699 . T C 16.1 . DP=10;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,6,0,4;MQ=60;FQ=19.1;PV4=1,6.4e-08,1,0.3 GT:PL:GQ 0/1:46,0,131:49 chr3 14188700 . C A 209 . DP=52;VDB=0.0066;AF1=0.5;AC1=1;DP4=24,1,25,2;MQ=60;FQ=178;PV4=1,1,1,1 GT:PL:GQ 0/1:239,0,205:99 chr3 14188762 . G C 225 . DP=126;VDB=0.0400;AF1=0.5;AC1=1;DP4=41,27,39,15;MQ=60;FQ=225;PV4=0.18,0.42,1,0.26 GT:PL:GQ 0/1:255,0,255:99 chr3 14190237 . T G 184 . DP=87;VDB=0.0345;AF1=0.5;AC1=1;DP4=25,17,25,19;MQ=59;FQ=187;PV4=0.83,2e-13,1,1 GT:PL:GQ 0/1:214,0,255:99 chr3 14190268 . G C 131 . DP=77;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,21,13,18;MQ=59;FQ=134;PV4=0.64,6.9e-18,1,1 GT:PL:GQ 0/1:161,0,255:99 chr3 14193889 . C T 128 . DP=117;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,41,13,37;MQ=60;FQ=131;PV4=0.41,1e-27,0.13,1 GT:PL:GQ 0/1:158,0,255:99 chr3 14197987 . A T 182 . DP=68;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,42,24;MQ=60;FQ=-226 GT:PL:GQ 1/1:215,199,0:99 chr3 14201400 . T G 13.2 . DP=13;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,6,1,5;MQ=60;FQ=16.1;PV4=1,2.4e-08,1,0.48 GT:PL:GQ 0/1:43,0,166:46 chr3 14208625 . G C 126 . DP=60;VDB=0.0271;AF1=0.5;AC1=1;DP4=23,7,22,5;MQ=60;FQ=129;PV4=0.75,1.7e-19,1,0.28 GT:PL:GQ 0/1:156,0,255:99 chr3 14211865 . C A 118 . DP=25;VDB=0.0008;AF1=0.5;AC1=1;DP4=12,0,10,0;MQ=60;FQ=121;PV4=1,0.0057,1,0.09 GT:PL:GQ 0/1:148,0,171:99 chr3 14220095 . C G 191 . DP=115;VDB=0.0392;AF1=0.5;AC1=1;DP4=38,19,32,24;MQ=59;FQ=194;PV4=0.34,3.4e-24,0.15,0.028 GT:PL:GQ 0/1:221,0,255:99 chr3 14485484 . C A 74 . DP=53;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,12,14,5;MQ=60;FQ=77;PV4=0.36,5.2e-12,1,1 GT:PL:GQ 0/1:104,0,255:99 chr3 14486392 . A G 12.3 . DP=3;VDB=0.0180;AF1=0.5006;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-3.59;PV4=1,0.037,1,0.37 GT:PL:GQ 0/1:42,0,26:29 chr3 14520164 . A G 17.1 . DP=30;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,16,1,11;MQ=60;FQ=20.1;PV4=1,1.6e-16,1,1 GT:PL:GQ 0/1:47,0,215:50 chr3 14520560 . G C 3.01 . DP=15;VDB=0.0126;AF1=0.4997;AC1=1;DP4=10,1,2,0;MQ=60;FQ=4.77;PV4=1,0.25,1,1 GT:PL:GQ 0/1:30,0,197:28 chr3 14526538 . G A 123 . DP=27;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,5,7,6;MQ=58;FQ=126;PV4=0.7,0.00022,0.48,1 GT:PL:GQ 0/1:153,0,231:99 chr3 14526656 . A G 21 . DP=6;VDB=0.0165;AF1=0.5;AC1=1;DP4=0,4,0,2;MQ=60;FQ=24;PV4=1,0.35,1,1 GT:PL:GQ 0/1:51,0,101:54 chr3 14537867 . A G 35 . DP=10;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,1,5,0;MQ=60;FQ=38;PV4=0.44,0.011,1,1 GT:PL:GQ 0/1:65,0,90:68 chr3 14538072 . CAA CA 217 . INDEL;DP=54;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,15,10,15;MQ=60;FQ=217;PV4=0.78,0.047,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 14548494 . A G 75 . DP=49;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,12,7,21;MQ=60;FQ=78;PV4=0.35,8.8e-27,1,0.079 GT:PL:GQ 0/1:105,0,255:99 chr3 14551444 . A G 142 . DP=58;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,16,13,10;MQ=60;FQ=145;PV4=0.79,4.1e-20,0.12,0.29 GT:PL:GQ 0/1:172,0,255:99 chr3 14554476 . T C 116 . DP=36;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,11,5,16;MQ=59;FQ=119;PV4=1,2.5e-12,0.2,0.3 GT:PL:GQ 0/1:146,0,229:99 chr3 14555216 . T C 225 . DP=44;VDB=0.0019;AF1=0.5;AC1=1;DP4=9,10,5,19;MQ=59;FQ=225;PV4=0.1,1,0.1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 14555739 . G A 77 . DP=21;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,5,8,0;MQ=55;FQ=80;PV4=0.11,1,0.0014,1 GT:PL:GQ 0/1:107,0,234:99 chr3 14555758 . CAG CAGTTAG 119 . INDEL;DP=22;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,6,6,1;MQ=56;FQ=122;PV4=0.33,1,0.0042,0.2 GT:PL:GQ 0/1:157,0,255:99 chr3 14555811 . A G 55 . DP=23;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,10,3,5;MQ=57;FQ=58;PV4=0.63,4.7e-08,0.0078,1 GT:PL:GQ 0/1:85,0,238:88 chr3 14561627 . AGG AGGG 181 . INDEL;DP=8;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,3;MQ=60;FQ=-58.5 GT:PL:GQ 1/1:222,24,0:45 chr3 14563258 . A G 108 . DP=22;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,12,1,6;MQ=59;FQ=111;PV4=1,1,1,1 GT:PL:GQ 0/1:138,0,213:99 chr3 14565017 . G A 125 . DP=51;VDB=0.0140;AF1=0.5;AC1=1;DP4=16,6,22,6;MQ=60;FQ=128;PV4=0.74,1.4e-23,1,0.48 GT:PL:GQ 0/1:155,0,255:99 chr3 14702982 . C A 186 . DP=85;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,57,25;MQ=59;FQ=-274 GT:PL:GQ 1/1:219,247,0:99 chr3 14703419 . a aT 98.7 . INDEL;DP=8;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:139,15,0:27 chr3 14706770 . a aTTGG 71.2 . INDEL;DP=4;VDB=0.0143;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:110,6,0:10 chr3 14708918 . A G 222 . DP=58;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,43,11;MQ=59;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr3 14709058 . G C 225 . DP=86;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,28,15,30;MQ=60;FQ=225;PV4=0.64,1,0.18,1 GT:PL:GQ 0/1:255,0,255:99 chr3 14725668 . G A 52.1 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:85,18,0:33 chr3 14745857 . G A 106 . DP=47;VDB=0.0298;AF1=0.5;AC1=1;DP4=22,4,13,7;MQ=59;FQ=109;PV4=0.17,1.3e-10,1,0.44 GT:PL:GQ 0/1:136,0,255:99 chr3 14755572 . A G 225 . DP=27;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,4,9,8;MQ=60;FQ=176;PV4=1,0.088,1,0.49 GT:PL:GQ 0/1:255,0,203:99 chr3 14755617 . C G 88 . DP=22;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,2,4,9;MQ=60;FQ=91;PV4=0.08,3.8e-10,1,1 GT:PL:GQ 0/1:118,0,180:99 chr3 14763954 . G A 103 . DP=78;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,19,32,12;MQ=60;FQ=106;PV4=0.01,2e-30,1,0.45 GT:PL:GQ 0/1:133,0,255:99 chr3 14768534 . A G 116 . DP=32;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,9,4,10;MQ=60;FQ=119;PV4=0.47,5.4e-09,1,0.5 GT:PL:GQ 0/1:146,0,255:99 chr3 14768554 . G A 91 . DP=24;VDB=0.0359;AF1=0.5;AC1=1;DP4=3,8,4,9;MQ=60;FQ=94;PV4=1,5.4e-12,1,0.39 GT:PL:GQ 0/1:121,0,204:99 chr3 14801550 . G A 90 . DP=12;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,5,0,7;MQ=60;FQ=87.6;PV4=1,0.057,1,0.11 GT:PL:GQ 0/1:120,0,116:99 chr3 14905513 . T G 104 . DP=18;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,15,2;MQ=60;FQ=-78 GT:PL:GQ 1/1:137,51,0:99 chr3 14939198 . G A 129 . DP=18;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,4,12;MQ=60;FQ=-75 GT:PL:GQ 1/1:162,48,0:93 chr3 14939364 . G A 26.8 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:58,6,0:10 chr3 14939479 . G T 191 . DP=90;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,66,23;MQ=60;FQ=-282 GT:PL:GQ 1/1:224,255,0:99 chr3 14939679 . G A 92 . DP=23;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,23;MQ=60;FQ=-96 GT:PL:GQ 1/1:125,69,0:99 chr3 14942024 . T C 95 . DP=17;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,15;MQ=60;FQ=-75 GT:PL:GQ 1/1:128,48,0:93 chr3 14949268 . C T 86 . DP=16;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,16;MQ=59;FQ=-75 GT:PL:GQ 1/1:119,48,0:93 chr3 14965466 . C T 90 . DP=23;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,23,0;MQ=59;FQ=-96 GT:PL:GQ 1/1:123,69,0:99 chr3 14965507 . A G 215 . DP=43;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,31,7;MQ=59;FQ=-141 GT:PL:GQ 1/1:248,114,0:99 chr3 15126165 . G A 7.8 . DP=3;VDB=0.0188;AF1=0.5003;AC1=1;DP4=1,0,2,0;MQ=60;FQ=3.27;PV4=1,0.046,1,1 GT:PL:GQ 0/1:37,0,28:32 chr3 15301363 . G A 183 . DP=87;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,18,26,25;MQ=60;FQ=186;PV4=0.83,4.2e-28,1,1 GT:PL:GQ 0/1:213,0,255:99 chr3 15311325 . A G 222 . DP=29;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,6,20;MQ=59;FQ=-79;PV4=0.26,1,1,0.23 GT:PL:GQ 1/1:255,52,0:99 chr3 15311464 . G T 130 . DP=9;VDB=0.0393;AF1=0.5939;AC1=1;DP4=0,1,1,6;MQ=57;FQ=-22;PV4=1,0.43,1,1 GT:PL:GQ 0/1:159,0,5:8 chr3 15345924 . G A 126 . DP=18;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,9,0,9;MQ=60;FQ=124;PV4=1,1,1,1 GT:PL:GQ 0/1:156,0,153:99 chr3 15455717 . A G 55 . DP=27;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,11,2,14;MQ=60;FQ=58;PV4=0.5,5e-15,1,1 GT:PL:GQ 0/1:85,0,157:88 chr3 15456550 . aaaacaaacaaacaaacaaacaaa aAAACaaacaaacaaacaaacaaacaaa 94.5 . INDEL;DP=11;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,1,0,3;MQ=60;FQ=10.8;PV4=1,1,1,1 GT:PL:GQ 0/1:132,0,45:48 chr3 15473515 . G A 63 . DP=29;VDB=0.0033;AF1=0.5;AC1=1;DP4=14,0,14,0;MQ=60;FQ=66;PV4=1,8.1e-13,1,1 GT:PL:GQ 0/1:93,0,175:96 chr3 15507761 . G A 44 . DP=11;VDB=0.0033;AF1=0.5;AC1=1;DP4=4,0,7,0;MQ=58;FQ=46.9;PV4=1,0.00011,0.24,1 GT:PL:GQ 0/1:74,0,90:77 chr3 15509212 . T C 38 . DP=14;VDB=0.0025;AF1=0.5;AC1=1;DP4=6,0,6,0;MQ=60;FQ=41;PV4=1,4.3e-05,1,0.42 GT:PL:GQ 0/1:68,0,125:71 chr3 15509327 . C G 144 . DP=49;VDB=0.0398;AF1=0.5;AC1=1;DP4=15,10,11,10;MQ=59;FQ=147;PV4=0.77,1.5e-11,0.14,0.2 GT:PL:GQ 0/1:174,0,255:99 chr3 15515695 . C T 67 . DP=27;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,10,3,6;MQ=60;FQ=70;PV4=1,9.6e-12,1,1 GT:PL:GQ 0/1:97,0,255:99 chr3 15516481 . T C 143 . DP=99;VDB=0.0399;AF1=0.5;AC1=1;DP4=30,14,28,24;MQ=60;FQ=146;PV4=0.21,2.4e-34,0.18,0.18 GT:PL:GQ 0/1:173,0,255:99 chr3 15516910 . T C 29.1 . DP=5;VDB=0.0082;AF1=0.5064;AC1=1;DP4=0,1,3,1;MQ=60;FQ=-11.3;PV4=0.4,0.092,1,1 GT:PL:GQ 0/1:59,0,16:19 chr3 15517025 . G A 103 . DP=15;VDB=0.0305;AF1=0.5;AC1=1;DP4=3,2,4,5;MQ=60;FQ=89.9;PV4=1,1.4e-05,1,1 GT:PL:GQ 0/1:133,0,117:99 chr3 15518731 . G C 109 . DP=64;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,20,12,11;MQ=60;FQ=112;PV4=1,1.1e-15,0.095,1 GT:PL:GQ 0/1:139,0,255:99 chr3 15518841 . G A 58 . DP=24;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,12,1,9;MQ=60;FQ=61;PV4=1,1.1e-07,1,0.2 GT:PL:GQ 0/1:88,0,220:91 chr3 15520639 . T G 148 . DP=16;VDB=0.0014;AF1=0.5;AC1=1;DP4=2,6,1,7;MQ=60;FQ=142;PV4=1,1,1,1 GT:PL:GQ 0/1:178,0,170:99 chr3 15520677 . G T 30 . DP=16;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,2,5,1;MQ=60;FQ=33;PV4=1,4.1e-09,1,1 GT:PL:GQ 0/1:60,0,210:63 chr3 15539976 . Ccacacacacacacacac Ccacacacacacacac 6.55 . INDEL;DP=41;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,5,4,0;MQ=60;FQ=9.05;PV4=1,0.035,1,0.42 GT:PL:GQ 0/1:43,0,255:44 chr3 15613279 . T G 106 . DP=42;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,17,3,13;MQ=58;FQ=109;PV4=1,6.1e-09,1,1 GT:PL:GQ 0/1:136,0,233:99 chr3 15643043 . A G 221 . DP=120;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,47,69;MQ=60;FQ=-282 GT:PL:GQ 1/1:254,255,0:99 chr3 15643175 . G A 225 . DP=95;VDB=0.0373;AF1=0.5;AC1=1;DP4=19,22,23,27;MQ=59;FQ=225;PV4=1,1,0.1,0.28 GT:PL:GQ 0/1:255,0,255:99 chr3 15686776 . T C 225 . DP=52;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,20,10,11;MQ=60;FQ=225;PV4=0.4,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 15727008 . A G 26 . DP=15;VDB=0.0033;AF1=0.5;AC1=1;DP4=2,8,1,4;MQ=60;FQ=29;PV4=1,6e-08,1,0.0074 GT:PL:GQ 0/1:56,0,217:59 chr3 15727823 . A G 19.1 . DP=40;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,20,0,19;MQ=60;FQ=22;PV4=1,2.8e-18,1,1 GT:PL:GQ 0/1:49,0,183:52 chr3 15736385 . A T 222 . DP=145;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,41,101;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 15737610 . T C 103 . DP=59;VDB=0.0399;AF1=0.5;AC1=1;DP4=25,6,24,3;MQ=60;FQ=106;PV4=0.48,6.5e-28,0.14,0.39 GT:PL:GQ 0/1:133,0,255:99 chr3 15737689 . G A 225 . DP=101;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,27,21,24;MQ=60;FQ=225;PV4=0.84,0.24,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr3 15737698 . T C 81 . DP=95;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,28,18,26;MQ=60;FQ=84;PV4=1,1.6e-49,0.15,1 GT:PL:GQ 0/1:111,0,255:99 chr3 15749352 . T C 49 . DP=15;VDB=0.0081;AF1=0.5;AC1=1;DP4=8,0,5,2;MQ=60;FQ=52;PV4=0.2,4.8e-08,1,0.33 GT:PL:GQ 0/1:79,0,146:82 chr3 15753641 . A G 225 . DP=52;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,3,22,8;MQ=60;FQ=214;PV4=0.49,0.12,1,1 GT:PL:GQ 0/1:255,0,241:99 chr3 15756215 . A T 57 . DP=18;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,7,1,10;MQ=60;FQ=60;PV4=1,8.6e-12,1,0.059 GT:PL:GQ 0/1:87,0,126:90 chr3 15807725 . T A 225 . DP=43;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,6,14,5;MQ=59;FQ=225;PV4=1,0.068,1,0.29 GT:PL:GQ 0/1:255,0,255:99 chr3 15900973 . A C 39 . DP=24;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,12,0,9;MQ=57;FQ=42;PV4=0.5,0.14,0.16,1 GT:PL:GQ 0/1:69,0,148:72 chr3 15901053 . CT C 27.2 . INDEL;DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:66,6,0:10 chr3 16310857 . G A 186 . DP=25;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,25;MQ=60;FQ=-102 GT:PL:GQ 1/1:219,75,0:99 chr3 16313320 . G A 136 . DP=55;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,20,6,23;MQ=60;FQ=139;PV4=1,5.1e-20,1,0.11 GT:PL:GQ 0/1:166,0,255:99 chr3 16313872 . G C 117 . DP=14;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,5,0,9;MQ=60;FQ=75;PV4=1,0.18,1,1 GT:PL:GQ 0/1:147,0,102:99 chr3 16327909 . C T 63 . DP=50;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,24,0,21;MQ=59;FQ=66;PV4=0.12,1.1e-19,0.02,1 GT:PL:GQ 0/1:93,0,255:96 chr3 16343092 . T G 39 . DP=13;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,1,4,2;MQ=60;FQ=42;PV4=1,6.9e-07,1,0.17 GT:PL:GQ 0/1:69,0,147:72 chr3 16358584 . T C 207 . DP=56;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,29,21;MQ=59;FQ=-178 GT:PL:GQ 1/1:240,151,0:99 chr3 16364846 . C T 158 . DP=39;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,8,13,8;MQ=59;FQ=161;PV4=0.52,1.1e-07,0.2,1 GT:PL:GQ 0/1:188,0,255:99 chr3 16364919 . A C 222 . DP=51;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,24,27;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr3 16364954 . C T 225 . DP=42;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,11,9,17;MQ=60;FQ=201;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,228:99 chr3 16368121 . T C 37.8 . DP=2;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:69,6,0:10 chr3 16419352 . G A 166 . DP=62;VDB=0.0398;AF1=0.5;AC1=1;DP4=11,15,20,12;MQ=60;FQ=169;PV4=0.19,1.2e-16,0.19,1 GT:PL:GQ 0/1:196,0,255:99 chr3 16450872 . T C 225 . DP=50;VDB=0.0398;AF1=0.5;AC1=1;DP4=17,6,15,12;MQ=60;FQ=225;PV4=0.24,0.33,0.18,1 GT:PL:GQ 0/1:255,0,255:99 chr3 16535229 . C T 83 . DP=23;VDB=0.0081;AF1=0.5;AC1=1;DP4=7,4,10,2;MQ=59;FQ=86;PV4=0.37,3.9e-07,1,0.19 GT:PL:GQ 0/1:113,0,204:99 chr3 16639754 . G T 86 . DP=38;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,16,6,7;MQ=60;FQ=89;PV4=0.49,1.9e-08,1,1 GT:PL:GQ 0/1:116,0,255:99 chr3 16646745 . C G 145 . DP=42;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,12,6,13;MQ=59;FQ=148;PV4=1,7.7e-06,0.17,0.38 GT:PL:GQ 0/1:175,0,255:99 chr3 16926599 . T G 40 . DP=3;VDB=0.0170;AF1=1;AC1=2;DP4=0,0,3,0;MQ=52;FQ=-36 GT:PL:GQ 1/1:72,9,0:16 chr3 16926642 . A G 39 . DP=3;VDB=0.0149;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:71,9,0:16 chr3 16926648 . T G 73.3 . DP=5;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:106,15,0:27 chr3 16926666 . T G 123 . DP=9;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,7,2;MQ=57;FQ=-54 GT:PL:GQ 1/1:156,27,0:51 chr3 17208267 . T C 225 . DP=75;VDB=0.0398;AF1=0.5;AC1=1;DP4=16,21,20,16;MQ=60;FQ=225;PV4=0.35,1,1,0.21 GT:PL:GQ 0/1:255,0,255:99 chr3 17208484 . A G 3.54 . DP=3;VDB=0.0159;AF1=0.5001;AC1=1;DP4=0,1,0,2;MQ=60;FQ=3.25;PV4=1,0.11,1,1 GT:PL:GQ 0/1:31,0,30:29 chr3 17275173 . G C 222 . DP=104;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,35,63;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 17300133 . A C 61.1 . DP=6;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:94,18,0:33 chr3 17413531 . aaaacaaacaaacaaacaaa aCaaacaaacaaacaaacaaa,aAAACAAACAAACAAACaaacaaacaaacaaacaaa 23.5 . INDEL;DP=45;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,44,1;MQ=41;FQ=-131 GT:PL:GQ 1/1:197,229,133,76,0,37:99 chr3 17470114 . C T 39.8 . DP=2;VDB=0.0147;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:71,6,0:10 chr3 18058059 . A G 4.13 . DP=4;VDB=0.0099;AF1=0.4998;AC1=1;DP4=2,0,2,0;MQ=60;FQ=6.16;PV4=1,0.065,1,0.087 GT:PL:GQ 0/1:32,0,51:31 chr3 18083051 . A T 49 . DP=35;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,17,4,7;MQ=60;FQ=52;PV4=0.44,5.1e-18,1,1 GT:PL:GQ 0/1:79,0,255:82 chr3 18308478 . T C 165 . DP=104;VDB=0.0365;AF1=0.5;AC1=1;DP4=38,8,45,11;MQ=60;FQ=168;PV4=0.8,1.2e-36,0.18,0.31 GT:PL:GQ 0/1:195,0,255:99 chr3 19388116 . T A 150 . DP=161;VDB=0.0380;AF1=0.5;AC1=1;DP4=63,28,48,19;MQ=60;FQ=153;PV4=0.86,6.7e-55,0.41,1 GT:PL:GQ 0/1:180,0,255:99 chr3 19436587 . T C 18.6 . DP=4;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:51,12,0:20 chr3 19551752 . A G 225 . DP=118;VDB=0.0345;AF1=0.5;AC1=1;DP4=41,19,36,16;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 19556927 . T A 78 . DP=12;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,5,2,5;MQ=60;FQ=72.4;PV4=0.47,0.0012,1,1 GT:PL:GQ 0/1:108,0,100:99 chr3 19559442 . TAAG T 217 . INDEL;DP=33;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,5,12,5;MQ=55;FQ=217;PV4=1,3.4e-08,0.021,0.31 GT:PL:GQ 0/1:255,0,255:99 chr3 19574945 . A G 69 . DP=42;VDB=0.0359;AF1=0.5;AC1=1;DP4=17,10,6,7;MQ=59;FQ=72;PV4=0.5,3.2e-16,1,1 GT:PL:GQ 0/1:99,0,255:99 chr3 19947296 . T C 207 . DP=34;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,9,2,17;MQ=60;FQ=205;PV4=0.19,1,1,1 GT:PL:GQ 0/1:237,0,233:99 chr3 19959756 . G A 222 . DP=81;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,23,56;MQ=59;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr3 19961330 . C T 152 . DP=46;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,24,3;MQ=60;FQ=-108 GT:PL:GQ 1/1:185,81,0:99 chr3 19962044 . G A 80 . DP=72;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,15,21,13;MQ=60;FQ=83;PV4=0.81,1.9e-36,1,1 GT:PL:GQ 0/1:110,0,255:99 chr3 19962199 . G C 23 . DP=16;VDB=0.0218;AF1=0.5;AC1=1;DP4=0,13,0,3;MQ=60;FQ=26;PV4=1,1,1,1 GT:PL:GQ 0/1:53,0,172:56 chr3 19962223 . G A 93 . DP=7;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,2,0,5;MQ=60;FQ=28;PV4=1,0.19,1,0.062 GT:PL:GQ 0/1:123,0,55:58 chr3 19974700 . T C 222 . DP=32;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,29,3;MQ=59;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr3 19975215 . C A 136 . DP=164;VDB=0.0399;AF1=0.5;AC1=1;DP4=57,33,42,27;MQ=60;FQ=139;PV4=0.87,9.4e-50,0.43,0.11 GT:PL:GQ 0/1:166,0,255:99 chr3 19975582 . A G 55 . DP=11;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:88,30,0:57 chr3 19992432 . G T 20 . DP=17;VDB=0.0042;AF1=0.5;AC1=1;DP4=6,4,7,0;MQ=60;FQ=23;PV4=0.1,2.4e-09,1,1 GT:PL:GQ 0/1:50,0,220:53 chr3 19992588 . G A 97 . DP=30;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,11,4,12;MQ=60;FQ=100;PV4=1,5.6e-14,1,1 GT:PL:GQ 0/1:127,0,235:99 chr3 20017489 . G C 11.3 . DP=4;VDB=0.0116;AF1=0.5008;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-4.18;PV4=1,0.028,1,1 GT:PL:GQ 0/1:41,0,25:28 chr3 20017490 . G C 11.3 . DP=4;VDB=0.0116;AF1=0.5008;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-4.18;PV4=1,0.028,1,1 GT:PL:GQ 0/1:41,0,25:28 chr3 20042834 . C T 225 . DP=105;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,33,20,30;MQ=59;FQ=225;PV4=0.68,0.24,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr3 20043502 . C T 225 . DP=101;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,37,15,31;MQ=60;FQ=225;PV4=1,1,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr3 20043531 . C T 85 . DP=82;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,30,8,27;MQ=60;FQ=88;PV4=0.33,2.3e-39,0.13,0.35 GT:PL:GQ 0/1:115,0,255:99 chr3 20053676 . T C 112 . DP=36;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,17,5,10;MQ=60;FQ=115;PV4=0.07,1.1e-08,1,1 GT:PL:GQ 0/1:142,0,215:99 chr3 20141301 . T C 43.8 . DP=2;VDB=0.0159;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:75,6,0:10 chr3 20141308 . A G 94.3 . DP=5;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:127,15,0:27 chr3 20142360 . T C 6.02 . DP=3;VDB=0.0089;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr3 20142666 . T C 101 . DP=23;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,14,0,8;MQ=59;FQ=104;PV4=1,0.21,0.096,1 GT:PL:GQ 0/1:131,0,178:99 chr3 20143020 . G C 222 . DP=52;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,10,38;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr3 20156302 . T C 46.3 . DP=5;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:79,15,0:27 chr3 20161043 . G T 225 . DP=57;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,11,21,6;MQ=60;FQ=225;PV4=0.26,0.41,0.15,0.42 GT:PL:GQ 0/1:255,0,255:99 chr3 21462754 . A G 48 . DP=32;VDB=0.0271;AF1=0.5;AC1=1;DP4=15,3,10,2;MQ=60;FQ=51;PV4=1,1e-12,1,1 GT:PL:GQ 0/1:78,0,239:81 chr3 21462787 . G A 212 . DP=45;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,36,8;MQ=60;FQ=-159 GT:PL:GQ 1/1:245,132,0:99 chr3 21706369 . G A 76 . DP=65;VDB=0.0373;AF1=0.5;AC1=1;DP4=24,18,15,8;MQ=60;FQ=79;PV4=0.6,8e-18,1,0.0063 GT:PL:GQ 0/1:106,0,255:99 chr3 23364883 . G A 117 . DP=21;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,1;MQ=60;FQ=-90 GT:PL:GQ 1/1:150,63,0:99 chr3 23987002 . aggcggcggcggcggcg aGGCggcggcggcggcggcg 71.2 . INDEL;DP=2;VDB=0.0182;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:110,6,0:10 chr3 23996371 . T G 21.5 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:54,12,0:21 chr3 24006477 . T A 116 . DP=32;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,27,4;MQ=60;FQ=-120 GT:PL:GQ 1/1:149,93,0:99 chr3 24009279 . A C 106 . DP=18;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,2;MQ=60;FQ=-78 GT:PL:GQ 1/1:139,51,0:99 chr3 24169361 . T C 69 . DP=44;VDB=0.0099;AF1=0.5;AC1=1;DP4=2,20,2,19;MQ=60;FQ=72;PV4=1,1.7e-19,1,1 GT:PL:GQ 0/1:99,0,238:99 chr3 24562877 . G T 222 . DP=74;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,23,46;MQ=60;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr3 25660357 . T C 96 . DP=9;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,4,1,4;MQ=60;FQ=65;PV4=1,0.31,1,1 GT:PL:GQ 0/1:126,0,92:95 chr3 25775356 . A C 165 . DP=80;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,55,15;MQ=60;FQ=-238 GT:PL:GQ 1/1:198,211,0:99 chr3 25836023 . C T 57 . DP=8;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:90,24,0:45 chr3 25902401 . G C 74 . DP=3;VDB=0.0050;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:106,9,0:16 chr3 25904394 . T C 107 . DP=20;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,16,2;MQ=59;FQ=-81 GT:PL:GQ 1/1:140,54,0:99 chr3 26751736 . C T 225 . DP=74;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,17,28,13;MQ=60;FQ=225;PV4=0.093,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 27204052 . G A 225 . DP=63;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,16,17,13;MQ=60;FQ=225;PV4=0.62,0.04,1,0.37 GT:PL:GQ 0/1:255,0,255:99 chr3 27233498 . C A 133 . DP=87;VDB=0.0392;AF1=0.5;AC1=1;DP4=41,12,23,10;MQ=60;FQ=136;PV4=0.46,6.4e-21,1,1 GT:PL:GQ 0/1:163,0,255:99 chr3 27243045 . G C 158 . DP=81;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,16,22,20;MQ=59;FQ=161;PV4=0.82,1.8e-27,1,1 GT:PL:GQ 0/1:188,0,255:99 chr3 27243119 . G A 207 . DP=56;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,26,3,22;MQ=60;FQ=210;PV4=0.72,0.1,1,0.38 GT:PL:GQ 0/1:237,0,255:99 chr3 27243871 . T C 60 . DP=15;VDB=0.0140;AF1=0.5;AC1=1;DP4=5,1,8,1;MQ=60;FQ=63;PV4=1,8.5e-07,1,1 GT:PL:GQ 0/1:90,0,143:93 chr3 27296796 . C G 225 . DP=83;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,33,14,27;MQ=60;FQ=225;PV4=0.21,0.24,1,0.36 GT:PL:GQ 0/1:255,0,255:99 chr3 27296822 . A T 125 . DP=74;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,30,8,30;MQ=60;FQ=128;PV4=0.55,1.8e-32,1,1 GT:PL:GQ 0/1:155,0,255:99 chr3 27297816 . G C 151 . DP=60;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,10,25,9;MQ=60;FQ=154;PV4=0.4,1.8e-20,1,0.29 GT:PL:GQ 0/1:181,0,255:99 chr3 27326097 . G T 81 . DP=22;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,1,11,1;MQ=60;FQ=84;PV4=1,1.2e-09,1,0.44 GT:PL:GQ 0/1:111,0,179:99 chr3 27326451 . A G 181 . DP=20;VDB=0.0384;AF1=0.5;AC1=1;DP4=2,8,3,7;MQ=60;FQ=172;PV4=1,0.47,1,1 GT:PL:GQ 0/1:211,0,199:99 chr3 27332820 . A G 56 . DP=52;VDB=0.0190;AF1=0.5;AC1=1;DP4=11,21,3,16;MQ=60;FQ=59;PV4=0.2,3.6e-27,1,1 GT:PL:GQ 0/1:86,0,255:89 chr3 27350384 . G T 218 . DP=26;VDB=0.0384;AF1=0.5;AC1=1;DP4=7,5,8,5;MQ=60;FQ=203;PV4=1,1,1,1 GT:PL:GQ 0/1:248,0,230:99 chr3 27353716 . C A 65 . DP=25;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,11,1,10;MQ=59;FQ=68;PV4=1,1.4e-08,0.14,0.22 GT:PL:GQ 0/1:95,0,218:98 chr3 27387462 . G GGTAA 136 . INDEL;DP=5;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,4,1;MQ=50;FQ=-49.5 GT:PL:GQ 1/1:176,15,0:27 chr3 27394419 . T G 56 . DP=20;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,7,3,4;MQ=60;FQ=59;PV4=1,3e-07,1,1 GT:PL:GQ 0/1:86,0,255:89 chr3 27424718 . A G 222 . DP=139;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,54,79;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 27463229 . C T 57 . DP=36;VDB=0.0118;AF1=0.5;AC1=1;DP4=6,15,3,12;MQ=59;FQ=60;PV4=0.7,6.8e-12,0.41,1 GT:PL:GQ 0/1:87,0,255:90 chr3 27494620 . A T 6.98 . DP=14;VDB=0.0345;AF1=0.4999;AC1=1;DP4=6,3,5,0;MQ=58;FQ=9.53;PV4=0.26,1.5e-08,0.095,1 GT:PL:GQ 0/1:36,0,214:37 chr3 28358057 . C T 58 . DP=6;VDB=0.0082;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=60;FQ=31;PV4=1,0.099,1,0.38 GT:PL:GQ 0/1:88,0,58:61 chr3 28533458 . A G 25 . DP=8;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=60;FQ=28;PV4=1,1.1e-05,1,1 GT:PL:GQ 0/1:55,0,78:58 chr3 29476428 . G A 189 . DP=18;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,4,2,9;MQ=60;FQ=113;PV4=0.58,1,1,1 GT:PL:GQ 0/1:219,0,140:99 chr3 29529907 . G A 106 . DP=31;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,2;MQ=55;FQ=-114 GT:PL:GQ 1/1:139,87,0:99 chr3 29529913 . TTCTCTCTCTCTCT TTCTCTCTCTCT 147 . INDEL;DP=33;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,28,2;MQ=55;FQ=-125 GT:PL:GQ 1/1:188,90,0:99 chr3 29804300 . C A 131 . DP=9;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:164,21,0:39 chr3 29804487 . A T 186 . DP=51;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,29,21;MQ=60;FQ=-178 GT:PL:GQ 1/1:219,151,0:99 chr3 29804509 . T C 222 . DP=54;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,27,23;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr3 29977739 . T C 222 . DP=49;VDB=0.0399;AF1=1;AC1=2;DP4=0,1,9,38;MQ=59;FQ=-142;PV4=1,1,1,1 GT:PL:GQ 1/1:255,115,0:99 chr3 30713126 . T A 132 . DP=34;VDB=0.0393;AF1=0.5;AC1=1;DP4=11,3,16,4;MQ=59;FQ=135;PV4=1,5.5e-11,0.12,0.15 GT:PL:GQ 0/1:162,0,223:99 chr3 30842346 . aagagagagagagagagagagagagag aagagagagagagagagagagag 48.4 . INDEL;DP=9;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,1,2;MQ=53;FQ=-43.5 GT:PL:GQ 1/1:88,9,0:16 chr3 30842597 . ATT ATTT 187 . INDEL;DP=14;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,12;MQ=58;FQ=-73.5 GT:PL:GQ 1/1:228,39,0:75 chr3 30875317 . C A 59 . DP=25;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,2,12,1;MQ=60;FQ=62;PV4=0.59,6.5e-14,1,1 GT:PL:GQ 0/1:89,0,218:92 chr3 30885806 . T C 225 . DP=71;VDB=0.0400;AF1=0.5;AC1=1;DP4=31,10,19,9;MQ=60;FQ=225;PV4=0.59,0.096,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 31621228 . T TAAA 45.2 . INDEL;DP=4;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,2,0;MQ=47;FQ=-40.5 GT:PL:GQ 1/1:84,6,0:10 chr3 31642037 . A T 35.3 . DP=6;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:68,15,0:27 chr3 31663515 . AGT AGTGTGGT 89.4 . INDEL;DP=3;VDB=0.0208;AF1=1;AC1=2;DP4=0,0,3,0;MQ=52;FQ=-43.5 GT:PL:GQ 1/1:129,9,0:16 chr3 31725316 . G A 222 . DP=81;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,40,37;MQ=59;FQ=-259 GT:PL:GQ 1/1:255,232,0:99 chr3 31725691 . T C 130 . DP=19;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,2,16;MQ=59;FQ=-81 GT:PL:GQ 1/1:163,54,0:99 chr3 31839135 . A G 125 . DP=8;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:158,21,0:39 chr3 31839242 . T C 222 . DP=69;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,48,20;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr3 32030998 . C T 139 . DP=40;VDB=0.0393;AF1=0.5;AC1=1;DP4=11,7,8,12;MQ=60;FQ=142;PV4=0.33,3.7e-19,1,0.14 GT:PL:GQ 0/1:169,0,255:99 chr3 32031024 . C T 126 . DP=39;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,7,8,10;MQ=60;FQ=129;PV4=0.21,1.1e-13,1,1 GT:PL:GQ 0/1:156,0,255:99 chr3 32031135 . A G 128 . DP=57;VDB=0.0271;AF1=0.5;AC1=1;DP4=15,18,9,15;MQ=60;FQ=131;PV4=0.6,2.3e-23,1,1 GT:PL:GQ 0/1:158,0,255:99 chr3 32031615 . A C 83 . DP=67;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,11,16,11;MQ=59;FQ=86;PV4=0.3,3.2e-29,1,0.27 GT:PL:GQ 0/1:113,0,255:99 chr3 32031622 . T C 95 . DP=67;VDB=0.0399;AF1=0.5;AC1=1;DP4=28,11,16,9;MQ=59;FQ=98;PV4=0.59,3.1e-16,0.32,1 GT:PL:GQ 0/1:125,0,255:99 chr3 32031643 . A G 225 . DP=79;VDB=0.0399;AF1=0.5;AC1=1;DP4=34,16,18,9;MQ=58;FQ=225;PV4=1,1,0.41,1 GT:PL:GQ 0/1:255,0,255:99 chr3 32031962 . A G 225 . DP=51;VDB=0.0081;AF1=0.5;AC1=1;DP4=7,23,6,13;MQ=59;FQ=225;PV4=0.53,0.13,0.041,1 GT:PL:GQ 0/1:255,0,255:99 chr3 32032397 . G T 225 . DP=107;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,31,26,19;MQ=60;FQ=225;PV4=0.24,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 32493682 . A G 41 . DP=21;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,9,1,10;MQ=60;FQ=44;PV4=1,1.4e-09,1,1 GT:PL:GQ 0/1:71,0,172:74 chr3 32544147 . T C 137 . DP=26;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,7,1,10;MQ=59;FQ=140;PV4=0.036,1,0.13,1 GT:PL:GQ 0/1:167,0,248:99 chr3 32568145 . Ccacacacacacacacacacacacac Ccacacacacacacacacacacac,CCAcacacacacacacacacacacacac,Ccacacacacacacacacacac 100 . INDEL;DP=10;VDB=0.0014;AF1=0.5025;AC1=1;DP4=1,0,9,0;MQ=60;FQ=-14.7;PV4=1,1,1,0.25 GT:PL:GQ 0/1:173,35,55,113,0,141,126,17,95,155:23 chr3 32746288 . GTTTTTTTTTTTT GTTTTTTTTTTTTTTT 12.8 . INDEL;DP=19;VDB=0.0392;AF1=0.5163;AC1=1;DP4=5,4,5,3;MQ=60;FQ=-22.5;PV4=1,1,1,0.19 GT:PL:GQ 0/1:54,4,16:15 chr3 32758763 . G A 150 . DP=34;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,17,1,12;MQ=60;FQ=153;PV4=0.63,0.1,1,0.22 GT:PL:GQ 0/1:180,0,255:99 chr3 32766905 . A G 25 . DP=22;VDB=0.0066;AF1=0.5;AC1=1;DP4=10,0,11,0;MQ=60;FQ=28;PV4=1,1.2e-13,1,0.079 GT:PL:GQ 0/1:55,0,160:58 chr3 32801173 . A G 58 . DP=17;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,5,0,12;MQ=60;FQ=60.8;PV4=1,6.6e-10,1,0.5 GT:PL:GQ 0/1:88,0,101:91 chr3 32815231 . A T 9.49 . DP=4;VDB=0.0027;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:41,9,0:12 chr3 32915214 . C G 176 . DP=30;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,25,4;MQ=59;FQ=-114 GT:PL:GQ 1/1:209,87,0:99 chr3 32927400 . G A 132 . DP=69;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,13,13,17;MQ=60;FQ=135;PV4=0.14,2.3e-24,1,0.25 GT:PL:GQ 0/1:162,0,255:99 chr3 32927509 . G T 202 . DP=43;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,7,32;MQ=60;FQ=-144 GT:PL:GQ 1/1:235,117,0:99 chr3 32933036 . G A 180 . DP=83;VDB=0.0393;AF1=0.5;AC1=1;DP4=23,15,20,18;MQ=59;FQ=183;PV4=0.64,1.6e-13,0.04,1 GT:PL:GQ 0/1:210,0,255:99 chr3 33055721 . A G 222 . DP=38;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,21,16;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr3 33087705 . T A 19.1 . DP=8;VDB=0.0104;AF1=0.5;AC1=1;DP4=5,1,1,1;MQ=60;FQ=22;PV4=0.46,0.44,1,0.32 GT:PL:GQ 0/1:49,0,148:52 chr3 33093190 . T C 54 . DP=13;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:87,39,0:75 chr3 33099880 . T C 67.1 . DP=11;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:100,21,0:39 chr3 33118631 . G A 148 . DP=32;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,7,7,3;MQ=60;FQ=151;PV4=1,0.45,0.075,0.35 GT:PL:GQ 0/1:178,0,255:99 chr3 33138544 . A G 222 . DP=62;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,31,28;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr3 33138549 . G A 99 . DP=63;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,17,18,11;MQ=60;FQ=102;PV4=0.21,7e-29,1,1 GT:PL:GQ 0/1:129,0,255:99 chr3 33155782 . G A 180 . DP=19;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,3,6,6;MQ=59;FQ=124;PV4=1,0.1,0.23,1 GT:PL:GQ 0/1:210,0,151:99 chr3 33155999 . C A 3.54 . DP=13;VDB=0.0129;AF1=0.4998;AC1=1;DP4=4,7,1,1;MQ=60;FQ=5.47;PV4=1,1,1,1 GT:PL:GQ 0/1:31,0,217:30 chr3 33161729 . A G 3.54 . DP=15;VDB=0.0033;AF1=0.4998;AC1=1;DP4=8,1,5,0;MQ=60;FQ=5.47;PV4=1,2.6e-07,1,0.29 GT:PL:GQ 0/1:31,0,174:30 chr3 33161745 . A G 31 . DP=23;VDB=0.0053;AF1=0.5;AC1=1;DP4=11,2,9,0;MQ=60;FQ=34;PV4=0.49,1.2e-09,1,1 GT:PL:GQ 0/1:61,0,219:64 chr3 33161898 . C T 225 . DP=59;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,14,7,27;MQ=60;FQ=225;PV4=0.15,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 33165436 . T A 75.1 . DP=6;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,5,1;MQ=60;FQ=-45 GT:PL:GQ 1/1:108,18,0:33 chr3 33171659 . A G 86 . DP=18;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81 GT:PL:GQ 1/1:119,54,0:99 chr3 33174156 . T G 68 . DP=30;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,14,0,15;MQ=60;FQ=71;PV4=1,6.8e-12,1,1 GT:PL:GQ 0/1:98,0,200:99 chr3 33174168 . G A 62 . DP=22;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,8,0,12;MQ=60;FQ=65;PV4=1,2.4e-11,1,1 GT:PL:GQ 0/1:92,0,140:95 chr3 33175793 . C A 193 . DP=53;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,8,42;MQ=60;FQ=-178 GT:PL:GQ 1/1:226,151,0:99 chr3 33175854 . A G 23 . DP=11;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,4,0,7;MQ=60;FQ=26;PV4=1,1.5e-07,1,0.35 GT:PL:GQ 0/1:53,0,88:56 chr3 33194990 . C A 108 . DP=221;VDB=0.0380;AF1=0.5;AC1=1;DP4=58,52,56,45;MQ=60;FQ=111;PV4=0.78,3.8e-86,0.15,1 GT:PL:GQ 0/1:138,0,255:99 chr3 33216357 . G A 186 . DP=30;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,23,5;MQ=60;FQ=-111 GT:PL:GQ 1/1:219,84,0:99 chr3 33255592 . A G 219 . DP=30;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,14;MQ=59;FQ=-114 GT:PL:GQ 1/1:252,87,0:99 chr3 33260151 . C T 3.54 . DP=3;VDB=0.0178;AF1=0.5;AC1=1;DP4=1,0,1,1;MQ=60;FQ=3.81;PV4=1,0.052,1,1 GT:PL:GQ 0/1:31,0,32:29 chr3 33434831 . G A 170 . DP=54;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,5,18,10;MQ=59;FQ=173;PV4=0.36,6.2e-13,0.051,1 GT:PL:GQ 0/1:200,0,255:99 chr3 33444286 . T G 222 . DP=51;VDB=0.0399;AF1=1;AC1=2;DP4=2,0,22,25;MQ=59;FQ=-104;PV4=0.23,0.4,0.39,1 GT:PL:GQ 1/1:255,77,0:99 chr3 33653622 . T G 32 . DP=18;VDB=0.0008;AF1=0.5;AC1=1;DP4=3,9,2,4;MQ=60;FQ=35;PV4=1,2.3e-09,1,0.46 GT:PL:GQ 0/1:62,0,240:65 chr3 33668662 . ATTAAGTTTA ATTA 128 . INDEL;DP=33;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,7,2,7;MQ=53;FQ=131;PV4=0.1,1.4e-07,0.00048,0.0035 GT:PL:GQ 0/1:166,0,255:99 chr3 33840114 . T C 5.46 . DP=3;VDB=0.0163;AF1=0.5001;AC1=1;DP4=1,0,2,0;MQ=60;FQ=4.69;PV4=1,0.061,1,0.44 GT:PL:GQ 0/1:34,0,32:33 chr3 33853747 . C T 19.1 . DP=8;VDB=0.0030;AF1=0.5;AC1=1;DP4=0,5,1,1;MQ=60;FQ=22;PV4=0.29,0.06,1,0.13 GT:PL:GQ 0/1:49,0,123:52 chr3 33877508 . T A 27 . DP=21;VDB=0.0033;AF1=0.5;AC1=1;DP4=6,0,9,0;MQ=60;FQ=30;PV4=1,5.5e-05,1,0.14 GT:PL:GQ 0/1:57,0,110:60 chr3 33877626 . G A 225 . DP=90;VDB=0.0298;AF1=0.5;AC1=1;DP4=29,16,32,12;MQ=60;FQ=225;PV4=0.49,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 33887102 . A G 99 . DP=65;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,28,4,29;MQ=58;FQ=102;PV4=1,1.4e-25,0.00057,1 GT:PL:GQ 0/1:129,0,255:99 chr3 33895391 . A G 61 . DP=49;VDB=0.0099;AF1=0.5;AC1=1;DP4=17,3,25,2;MQ=57;FQ=64;PV4=0.64,1.9e-25,0.0053,1 GT:PL:GQ 0/1:91,0,250:94 chr3 33905471 . A G 140 . DP=56;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,5,23,5;MQ=60;FQ=143;PV4=1,1.4e-17,1,1 GT:PL:GQ 0/1:170,0,255:99 chr3 33905566 . C T 181 . DP=93;VDB=0.0400;AF1=0.5;AC1=1;DP4=21,25,24,22;MQ=60;FQ=184;PV4=0.68,6.8e-18,1,1 GT:PL:GQ 0/1:211,0,255:99 chr3 33907835 . TCT TCTCCCT 217 . INDEL;DP=12;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,2,5,2;MQ=56;FQ=154;PV4=0.58,1,0.14,0.25 GT:PL:GQ 0/1:255,0,189:99 chr3 33907945 . A G 225 . DP=28;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,3,13,6;MQ=58;FQ=103;PV4=0.66,1,0.2,1 GT:PL:GQ 0/1:255,0,130:99 chr3 35723124 . T C 33 . DP=3;VDB=0.0147;AF1=0.5004;AC1=1;DP4=1,0,2,0;MQ=60;FQ=3.55;PV4=1,1,1,1 GT:PL:GQ 0/1:63,0,28:31 chr3 35725250 . C T 145 . DP=48;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,8,17,6;MQ=60;FQ=148;PV4=0.76,1.3e-16,0.15,0.41 GT:PL:GQ 0/1:175,0,255:99 chr3 35731725 . C T 47 . DP=18;VDB=0.0161;AF1=0.5;AC1=1;DP4=0,14,0,4;MQ=60;FQ=50;PV4=1,1,1,1 GT:PL:GQ 0/1:77,0,170:80 chr3 35756778 . A T 34 . DP=10;VDB=0.0081;AF1=0.5;AC1=1;DP4=5,0,5,0;MQ=60;FQ=37;PV4=1,1.3e-05,1,1 GT:PL:GQ 0/1:64,0,111:67 chr3 35778773 . A G 225 . DP=49;VDB=0.0373;AF1=0.5;AC1=1;DP4=4,16,10,17;MQ=59;FQ=198;PV4=0.33,0.43,1,1 GT:PL:GQ 0/1:255,0,225:99 chr3 35779750 . A G 174 . DP=74;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,20,17,21;MQ=60;FQ=177;PV4=0.81,6.9e-25,0.17,0.069 GT:PL:GQ 0/1:204,0,255:99 chr3 35780735 . T C 172 . DP=17;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,0,12,1;MQ=60;FQ=41;PV4=1,1,1,1 GT:PL:GQ 0/1:202,0,68:71 chr3 35785296 . T C 99 . DP=58;VDB=0.0216;AF1=0.5;AC1=1;DP4=23,0,29,6;MQ=59;FQ=102;PV4=0.072,8e-24,1,1 GT:PL:GQ 0/1:129,0,166:99 chr3 35785608 . G A 21 . DP=4;VDB=0.0167;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=23.4;PV4=1,0.14,1,1 GT:PL:GQ 0/1:51,0,59:53 chr3 35834005 . A G 168 . DP=62;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,14,10,28;MQ=60;FQ=171;PV4=0.56,2.6e-20,1,0.27 GT:PL:GQ 0/1:198,0,255:99 chr3 36570279 . A T 92 . DP=21;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,4,8,5;MQ=60;FQ=95;PV4=0.67,1.1e-07,1,1 GT:PL:GQ 0/1:122,0,167:99 chr3 36587526 . CTTTTT CTTTT 17.5 . INDEL;DP=12;VDB=0.0019;AF1=0.5;AC1=1;DP4=5,0,7,0;MQ=60;FQ=8.01;PV4=1,0.0079,1,1 GT:PL:GQ 0/1:55,0,42:45 chr3 36587541 . C G 49 . DP=20;VDB=0.0081;AF1=0.5;AC1=1;DP4=11,0,9,0;MQ=60;FQ=52;PV4=1,1.1e-08,1,0.37 GT:PL:GQ 0/1:79,0,166:82 chr3 36587544 . G A 50 . DP=21;VDB=0.0053;AF1=0.5;AC1=1;DP4=10,0,11,0;MQ=60;FQ=53;PV4=1,2e-10,1,1 GT:PL:GQ 0/1:80,0,151:83 chr3 36779707 . G A 202 . DP=164;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,81,71;MQ=60;FQ=-282 GT:PL:GQ 1/1:235,255,0:99 chr3 36869879 . agaaggaaggaaggaaggaaggaa aGAAGgaaggaaggaaggaaggaaggaa 60.5 . INDEL;DP=9;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=60;FQ=55.7;PV4=1,1,1,1 GT:PL:GQ 0/1:98,0,91:93 chr3 36876154 . C T 22 . DP=13;VDB=0.0008;AF1=0.5;AC1=1;DP4=7,1,5,0;MQ=60;FQ=25;PV4=1,1.9e-05,1,0.17 GT:PL:GQ 0/1:52,0,172:55 chr3 36887973 . C G 102 . DP=18;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,8,1,5;MQ=59;FQ=105;PV4=1,1,0.092,1 GT:PL:GQ 0/1:132,0,218:99 chr3 36888575 . C T 35 . DP=12;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,1,9,0;MQ=56;FQ=31;PV4=0.25,7.7e-07,1,1 GT:PL:GQ 0/1:65,0,59:61 chr3 36896653 . G C 186 . DP=39;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,33,5;MQ=60;FQ=-141 GT:PL:GQ 1/1:219,114,0:99 chr3 36897812 . T C 119 . DP=72;VDB=0.0400;AF1=0.5;AC1=1;DP4=17,16,17,19;MQ=60;FQ=122;PV4=0.81,2.5e-27,1,1 GT:PL:GQ 0/1:149,0,255:99 chr3 36899593 . C T 190 . DP=44;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,19,3,15;MQ=59;FQ=193;PV4=1,0.2,1,0.04 GT:PL:GQ 0/1:220,0,255:99 chr3 36915524 . T C 113 . DP=19;VDB=0.0066;AF1=0.5;AC1=1;DP4=7,0,11,0;MQ=59;FQ=94;PV4=1,0.21,1,1 GT:PL:GQ 0/1:143,0,121:99 chr3 36915814 . T G 18.6 . DP=5;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:51,12,0:20 chr3 36931411 . G A 142 . DP=99;VDB=0.0345;AF1=0.5;AC1=1;DP4=26,24,24,25;MQ=60;FQ=145;PV4=0.84,3.3e-33,1,0.3 GT:PL:GQ 0/1:172,0,255:99 chr3 36934534 . G C 28 . DP=16;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,8,0,6;MQ=60;FQ=31;PV4=0.5,7.5e-07,1,1 GT:PL:GQ 0/1:58,0,207:61 chr3 36937106 . G A 225 . DP=171;VDB=0.0380;AF1=0.5;AC1=1;DP4=53,30,47,39;MQ=60;FQ=225;PV4=0.27,0.35,0.16,0.4 GT:PL:GQ 0/1:255,0,255:99 chr3 36940741 . G T 120 . DP=56;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,20,8,13;MQ=60;FQ=123;PV4=1,1.5e-09,1,0.18 GT:PL:GQ 0/1:150,0,255:99 chr3 37096024 . T C 225 . DP=117;VDB=0.0271;AF1=0.5;AC1=1;DP4=18,52,13,33;MQ=59;FQ=225;PV4=0.83,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 37107012 . C G 147 . DP=32;VDB=0.0164;AF1=0.5;AC1=1;DP4=14,0,17,0;MQ=60;FQ=141;PV4=1,0.48,1,1 GT:PL:GQ 0/1:177,0,169:99 chr3 37156595 . C T 51 . DP=20;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,7,3,7;MQ=60;FQ=54;PV4=1,7.4e-14,1,1 GT:PL:GQ 0/1:81,0,198:84 chr3 37163039 . G A 167 . DP=32;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,19,13;MQ=59;FQ=-123 GT:PL:GQ 1/1:200,96,0:99 chr3 37459181 . T A 221 . DP=33;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,12,5,10;MQ=60;FQ=223;PV4=1,1,1,1 GT:PL:GQ 0/1:251,0,255:99 chr3 37535984 . C G 111 . DP=53;VDB=0.0400;AF1=0.5;AC1=1;DP4=19,9,10,12;MQ=60;FQ=114;PV4=0.15,1.5e-15,1,0.45 GT:PL:GQ 0/1:141,0,255:99 chr3 37536225 . C A 12 . DP=2;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr3 37560676 . A G 51 . DP=41;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,10,10,2;MQ=59;FQ=54;PV4=0.45,3.4e-10,1,0.21 GT:PL:GQ 0/1:81,0,255:84 chr3 37574951 . G A 110 . DP=71;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,21,11,26;MQ=60;FQ=113;PV4=1,1.4e-32,1,1 GT:PL:GQ 0/1:140,0,255:99 chr3 37575039 . G A 91.5 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:124,12,0:21 chr3 37627112 . T C 186 . DP=103;VDB=0.0365;AF1=0.5;AC1=1;DP4=24,24,21,33;MQ=59;FQ=189;PV4=0.32,3e-35,0.099,1 GT:PL:GQ 0/1:216,0,255:99 chr3 37627149 . G A 84 . DP=83;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,26,9,29;MQ=60;FQ=87;PV4=0.33,6.7e-41,0.15,1 GT:PL:GQ 0/1:114,0,255:99 chr3 37953024 . G C 29.5 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:62,12,0:21 chr3 37953083 . T A 171 . DP=49;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,41,5;MQ=60;FQ=-165 GT:PL:GQ 1/1:204,138,0:99 chr3 38009700 . C T 105 . DP=92;VDB=0.0298;AF1=0.5;AC1=1;DP4=29,25,27,10;MQ=60;FQ=108;PV4=0.081,3.3e-40,1,1 GT:PL:GQ 0/1:135,0,255:99 chr3 38009749 . C T 169 . DP=114;VDB=0.0392;AF1=0.5;AC1=1;DP4=29,35,25,22;MQ=60;FQ=172;PV4=0.45,2.3e-28,1,1 GT:PL:GQ 0/1:199,0,255:99 chr3 38010827 . A C 52 . DP=16;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,2,3,3;MQ=60;FQ=55;PV4=0.3,8.3e-05,1,1 GT:PL:GQ 0/1:82,0,192:85 chr3 38022139 . A G 41 . DP=45;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,9,10,5;MQ=59;FQ=44;PV4=1,1.8e-21,1,1 GT:PL:GQ 0/1:71,0,255:74 chr3 38023553 . A G 15.1 . DP=9;VDB=0.0070;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=60;FQ=18.1;PV4=1,0.00011,1,1 GT:PL:GQ 0/1:45,0,113:48 chr3 38025750 . CA C 217 . INDEL;DP=39;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,12,6,13;MQ=60;FQ=217;PV4=1,3.9e-11,1,0.19 GT:PL:GQ 0/1:255,0,255:99 chr3 38035508 . G A 188 . DP=85;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,23,17,31;MQ=59;FQ=191;PV4=0.82,1.6e-26,0.39,1 GT:PL:GQ 0/1:218,0,255:99 chr3 38038982 . T C 58 . DP=29;VDB=0.0398;AF1=0.5;AC1=1;DP4=11,5,11,2;MQ=60;FQ=61;PV4=0.41,2.9e-12,1,1 GT:PL:GQ 0/1:88,0,255:91 chr3 38039187 . C T 9.52 . DP=23;VDB=0.0343;AF1=0.5;AC1=1;DP4=3,11,1,5;MQ=60;FQ=12.3;PV4=1,3.4e-06,1,0.49 GT:PL:GQ 0/1:39,0,223:41 chr3 38043904 . T C 225 . DP=87;VDB=0.0345;AF1=0.5;AC1=1;DP4=34,11,34,6;MQ=60;FQ=225;PV4=0.42,0.092,1,0.37 GT:PL:GQ 0/1:255,0,255:99 chr3 38044143 . C G 57 . DP=47;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,21,1,21;MQ=59;FQ=60;PV4=0.61,2.4e-20,1,1 GT:PL:GQ 0/1:87,0,255:90 chr3 38044592 . C T 180 . DP=20;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,0,9,3;MQ=60;FQ=105;PV4=0.24,0.1,1,0.18 GT:PL:GQ 0/1:210,0,132:99 chr3 38046023 . A C 39 . DP=17;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,6,1,8;MQ=60;FQ=42;PV4=1,9.6e-08,1,1 GT:PL:GQ 0/1:69,0,117:72 chr3 38047607 . A C 110 . DP=30;VDB=0.0118;AF1=0.5;AC1=1;DP4=6,6,14,4;MQ=60;FQ=113;PV4=0.14,1.2e-08,1,1 GT:PL:GQ 0/1:140,0,215:99 chr3 38047680 . G A 225 . DP=68;VDB=0.0400;AF1=0.5;AC1=1;DP4=28,12,16,10;MQ=60;FQ=225;PV4=0.59,0.3,1,0.18 GT:PL:GQ 0/1:255,0,255:99 chr3 38047954 . G C 101 . DP=29;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,6,5,6;MQ=59;FQ=104;PV4=0.44,2.6e-11,0.11,0.02 GT:PL:GQ 0/1:131,0,255:99 chr3 38050159 . G A 20.1 . DP=5;VDB=0.0041;AF1=0.5008;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-4.12;PV4=1,0.0036,1,0.26 GT:PL:GQ 0/1:50,0,25:28 chr3 38051941 . T C 225 . DP=61;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,12,11,14;MQ=60;FQ=225;PV4=0.18,1,0.12,1 GT:PL:GQ 0/1:255,0,255:99 chr3 38053206 . T C 51 . DP=18;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,6,0,10;MQ=60;FQ=54;PV4=0.41,4.7e-10,1,1 GT:PL:GQ 0/1:81,0,144:84 chr3 38087024 . C T 7.8 . DP=39;VDB=0.0216;AF1=0.5;AC1=1;DP4=15,14,6,4;MQ=59;FQ=10.4;PV4=0.73,3.9e-15,1,1 GT:PL:GQ 0/1:37,0,255:39 chr3 38101422 . C T 27 . DP=9;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,4,0,5;MQ=60;FQ=30;PV4=1,0.00016,1,1 GT:PL:GQ 0/1:57,0,96:60 chr3 38134438 . A G 174 . DP=18;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,17;MQ=60;FQ=-78 GT:PL:GQ 1/1:207,51,0:99 chr3 38158348 . G A 177 . DP=83;VDB=0.0384;AF1=0.5;AC1=1;DP4=14,26,22,17;MQ=60;FQ=180;PV4=0.072,5.3e-23,1,1 GT:PL:GQ 0/1:207,0,255:99 chr3 38348686 . T G 78 . DP=34;VDB=0.0393;AF1=0.5;AC1=1;DP4=17,4,10,2;MQ=58;FQ=81;PV4=1,6.1e-11,1,1 GT:PL:GQ 0/1:108,0,255:99 chr3 38350479 . T C 222 . DP=54;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,42,11;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr3 38350519 . G A 222 . DP=76;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,46,30;MQ=60;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr3 38350543 . A G 222 . DP=85;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,42,39;MQ=60;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr3 38350630 . C A 222 . DP=68;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,48;MQ=60;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr3 38354839 . G T 10.4 . DP=6;VDB=0.0164;AF1=0.5006;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-3.63;PV4=1,0.009,1,1 GT:PL:GQ 0/1:40,0,26:30 chr3 38355184 . T C 51 . DP=7;VDB=0.0329;AF1=0.5;AC1=1;DP4=3,0,2,1;MQ=60;FQ=47;PV4=1,0.045,1,1 GT:PL:GQ 0/1:81,0,75:77 chr3 38357961 . C G 66 . DP=88;VDB=0.0081;AF1=0.5;AC1=1;DP4=24,28,15,19;MQ=60;FQ=69;PV4=1,3.7e-29,1,1 GT:PL:GQ 0/1:96,0,255:99 chr3 38390020 . C A 222 . DP=100;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,67,25;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 38390056 . G C 225 . DP=146;VDB=0.0365;AF1=0.5;AC1=1;DP4=54,23,40,27;MQ=60;FQ=225;PV4=0.22,1,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr3 38401677 . C T 138 . DP=21;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,18,3;MQ=59;FQ=-90 GT:PL:GQ 1/1:171,63,0:99 chr3 38401839 . T C 222 . DP=36;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,12,19;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr3 38401918 . A G 222 . DP=21;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,17;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr3 38406648 . T C 222 . DP=31;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,16,13;MQ=60;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr3 38406773 . G T 211 . DP=27;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,16;MQ=60;FQ=-108 GT:PL:GQ 1/1:244,81,0:99 chr3 38406793 . T G 151 . DP=20;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,11;MQ=60;FQ=-84 GT:PL:GQ 1/1:184,57,0:99 chr3 38408248 . G A 222 . DP=60;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,53,6;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr3 38408361 . G A 222 . DP=84;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,29,52;MQ=60;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr3 38408459 . A G 180 . DP=18;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81 GT:PL:GQ 1/1:213,54,0:99 chr3 38409600 . T G 193 . DP=42;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,23,15;MQ=60;FQ=-141 GT:PL:GQ 1/1:226,114,0:99 chr3 38442490 . G A 99 . DP=77;VDB=0.0392;AF1=0.5;AC1=1;DP4=32,21,14,8;MQ=60;FQ=102;PV4=1,5.5e-17,0.061,1 GT:PL:GQ 0/1:129,0,255:99 chr3 38519424 . A G 172 . DP=70;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,23,15,17;MQ=60;FQ=175;PV4=0.46,3.4e-11,0.15,0.2 GT:PL:GQ 0/1:202,0,255:99 chr3 38521156 . T C 164 . DP=88;VDB=0.0400;AF1=0.5;AC1=1;DP4=29,17,29,12;MQ=60;FQ=167;PV4=0.5,1.2e-29,1,1 GT:PL:GQ 0/1:194,0,255:99 chr3 38524742 . C T 225 . DP=61;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,16,13,17;MQ=60;FQ=225;PV4=0.8,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 38538466 . G T 38 . DP=5;VDB=0.0199;AF1=0.5008;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-4.12;PV4=1,0.0051,1,1 GT:PL:GQ 0/1:68,0,25:28 chr3 38540541 . A G 5.46 . DP=20;VDB=0.0004;AF1=0.4999;AC1=1;DP4=1,14,0,5;MQ=60;FQ=7.8;PV4=1,3e-06,1,0.32 GT:PL:GQ 0/1:34,0,209:34 chr3 38541318 . C A 135 . DP=15;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,4,6,2;MQ=60;FQ=137;PV4=0.31,0.11,1,0.072 GT:PL:GQ 0/1:165,0,173:99 chr3 38545349 . C T 16.1 . DP=5;VDB=0.0095;AF1=0.5005;AC1=1;DP4=0,1,0,3;MQ=60;FQ=-3.03;PV4=1,0.0076,1,1 GT:PL:GQ 0/1:46,0,27:30 chr3 38622467 . T C 204 . DP=121;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,76,42;MQ=59;FQ=-282 GT:PL:GQ 1/1:237,255,0:99 chr3 38627629 . A G 48 . DP=12;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:81,36,0:69 chr3 38645420 . T C 225 . DP=62;VDB=0.0400;AF1=0.5;AC1=1;DP4=24,10,16,7;MQ=60;FQ=225;PV4=1,1,0.11,1 GT:PL:GQ 0/1:255,0,255:99 chr3 38646423 . C T 121 . DP=22;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,14,1,7;MQ=60;FQ=124;PV4=0.36,0.3,1,0.4 GT:PL:GQ 0/1:151,0,174:99 chr3 38674712 . T C 129 . DP=29;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,9,6,8;MQ=60;FQ=132;PV4=1,1.1e-08,1,1 GT:PL:GQ 0/1:159,0,244:99 chr3 38739574 . T C 222 . DP=99;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,47,49;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 38739845 . A G 169 . DP=101;VDB=0.0398;AF1=0.5;AC1=1;DP4=23,28,17,28;MQ=60;FQ=172;PV4=0.54,8e-33,0.076,1 GT:PL:GQ 0/1:199,0,255:99 chr3 38743629 . G A 82 . DP=42;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,15,3,16;MQ=59;FQ=85;PV4=0.29,2.5e-14,0.14,0.33 GT:PL:GQ 0/1:112,0,255:99 chr3 38749026 . T A 40 . DP=20;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,12,0,8;MQ=60;FQ=43;PV4=1,1.5e-07,1,1 GT:PL:GQ 0/1:70,0,164:73 chr3 38764782 . G T 71 . DP=9;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:104,27,0:51 chr3 38766675 . A G 156 . DP=19;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,9,8;MQ=59;FQ=-78 GT:PL:GQ 1/1:189,51,0:99 chr3 38766701 . C T 152 . DP=22;VDB=0.0359;AF1=0.5;AC1=1;DP4=7,5,4,5;MQ=59;FQ=155;PV4=0.67,0.19,1,0.1 GT:PL:GQ 0/1:182,0,236:99 chr3 38780971 . G A 9.31 . DP=2;VDB=0.0174;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr3 38784029 . T C 222 . DP=37;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,8,28;MQ=59;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr3 38812650 . G A 81 . DP=13;VDB=0.0006;AF1=0.5;AC1=1;DP4=7,1,5,0;MQ=60;FQ=84;PV4=1,1,1,1 GT:PL:GQ 0/1:111,0,165:99 chr3 38812708 . C T 44 . DP=50;VDB=0.0271;AF1=0.5;AC1=1;DP4=20,10,17,3;MQ=60;FQ=47;PV4=0.2,1.8e-23,1,1 GT:PL:GQ 0/1:74,0,255:77 chr3 38888878 . C G 161 . DP=105;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,30,26,22;MQ=60;FQ=164;PV4=0.32,1.7e-42,1,1 GT:PL:GQ 0/1:191,0,255:99 chr3 38913569 . G T 22 . DP=3;VDB=0.0107;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:54,9,0:15 chr3 38926912 . C G 69 . DP=45;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,23,1,18;MQ=60;FQ=72;PV4=1,4.3e-27,1,1 GT:PL:GQ 0/1:99,0,221:99 chr3 38945560 . A G 210 . DP=37;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,15,3,13;MQ=59;FQ=213;PV4=0.7,1,1,1 GT:PL:GQ 0/1:240,0,255:99 chr3 38946872 . A T 166 . DP=24;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,4,17;MQ=60;FQ=-90 GT:PL:GQ 1/1:199,63,0:99 chr3 38949363 . A C 222 . DP=22;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,14,7;MQ=59;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr3 38961537 . T C 72 . DP=12;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:105,30,0:57 chr3 38967103 . C T 32 . DP=10;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,4,1,5;MQ=60;FQ=35;PV4=1,0.00043,1,1 GT:PL:GQ 0/1:62,0,83:65 chr3 38991598 . G T 41 . DP=23;VDB=0.0006;AF1=0.5;AC1=1;DP4=12,0,10,0;MQ=60;FQ=44;PV4=1,6.2e-13,1,1 GT:PL:GQ 0/1:71,0,167:74 chr3 39093326 . G A 72 . DP=30;VDB=0.0053;AF1=0.5;AC1=1;DP4=15,1,12,1;MQ=60;FQ=75;PV4=1,7.5e-15,1,0.41 GT:PL:GQ 0/1:102,0,208:99 chr3 39107993 . T G 5.46 . DP=8;VDB=0.0298;AF1=0.4999;AC1=1;DP4=2,1,4,0;MQ=60;FQ=7.8;PV4=0.43,0.028,1,1 GT:PL:GQ 0/1:34,0,70:34 chr3 39110179 . T C 20 . DP=12;VDB=0.0053;AF1=0.5;AC1=1;DP4=7,0,5,0;MQ=60;FQ=23;PV4=1,9.1e-07,1,0.066 GT:PL:GQ 0/1:50,0,141:53 chr3 39111140 . C A 135 . DP=115;VDB=0.0322;AF1=0.5;AC1=1;DP4=49,11,43,10;MQ=60;FQ=138;PV4=1,1.9e-43,1,1 GT:PL:GQ 0/1:165,0,255:99 chr3 39118796 . C T 70 . DP=35;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,11,4,14;MQ=59;FQ=73;PV4=0.47,1.1e-17,1,0.41 GT:PL:GQ 0/1:100,0,255:99 chr3 39141096 . A G 18.8 . DP=2;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:50,6,0:10 chr3 39149092 . A G 204 . DP=21;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,7,13;MQ=60;FQ=-87 GT:PL:GQ 1/1:237,60,0:99 chr3 39149404 . CT C 217 . INDEL;DP=45;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,15,7,11;MQ=60;FQ=217;PV4=1,1,1,0.19 GT:PL:GQ 0/1:255,0,255:99 chr3 39152575 . C G 83 . DP=26;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,11,7,5;MQ=59;FQ=86;PV4=0.041,6.2e-08,1,0.38 GT:PL:GQ 0/1:113,0,193:99 chr3 39161357 . G A 80 . DP=36;VDB=0.0190;AF1=0.5;AC1=1;DP4=18,1,16,1;MQ=60;FQ=83;PV4=1,1.5e-18,1,0.45 GT:PL:GQ 0/1:110,0,216:99 chr3 39161456 . G A 52 . DP=89;VDB=0.0298;AF1=0.5;AC1=1;DP4=25,26,13,17;MQ=59;FQ=55;PV4=0.65,8.1e-35,1,1 GT:PL:GQ 0/1:82,0,255:85 chr3 39161464 . G A 96 . DP=93;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,28,18,22;MQ=59;FQ=99;PV4=1,1.9e-36,1,1 GT:PL:GQ 0/1:126,0,255:99 chr3 39166484 . C T 43 . DP=19;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,3,6,2;MQ=60;FQ=46;PV4=1,2.4e-09,1,1 GT:PL:GQ 0/1:73,0,222:76 chr3 39166509 . A G 222 . DP=22;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,17,5;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr3 39167905 . G A 82 . DP=33;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,29;MQ=60;FQ=-117 GT:PL:GQ 1/1:115,90,0:99 chr3 39169693 . A G 8.65 . DP=4;VDB=0.0098;AF1=0.5005;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-3.17;PV4=1,0.037,1,0.33 GT:PL:GQ 0/1:38,0,27:31 chr3 39171676 . C T 125 . DP=74;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,11,22,21;MQ=60;FQ=128;PV4=0.47,1.4e-24,1,0.069 GT:PL:GQ 0/1:155,0,255:99 chr3 39175576 . G T 104 . DP=11;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:137,33,0:63 chr3 39178899 . C T 225 . DP=51;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,21,6,17;MQ=60;FQ=225;PV4=0.73,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 39179909 . G A 136 . DP=23;VDB=0.0359;AF1=0.5;AC1=1;DP4=1,6,5,10;MQ=60;FQ=111;PV4=0.62,9e-10,1,1 GT:PL:GQ 0/1:166,0,138:99 chr3 39180099 . T C 222 . DP=78;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,44,31;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr3 39180162 . A C 166 . DP=81;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,30,38;MQ=60;FQ=-232 GT:PL:GQ 1/1:199,205,0:99 chr3 39180263 . G A 108 . DP=50;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,15,10,22;MQ=60;FQ=111;PV4=0.33,1.1e-23,1,1 GT:PL:GQ 0/1:138,0,223:99 chr3 39184959 . C T 222 . DP=72;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,49,19;MQ=59;FQ=-232 GT:PL:GQ 1/1:255,205,0:99 chr3 39185077 . G A 225 . DP=133;VDB=0.0380;AF1=0.5;AC1=1;DP4=33,33,34,25;MQ=60;FQ=225;PV4=0.47,0.012,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 39185248 . A G 222 . DP=66;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,23,38;MQ=60;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr3 39185968 . A G 55.1 . DP=6;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:88,18,0:33 chr3 39186728 . C T 102 . DP=31;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,8,4,13;MQ=60;FQ=105;PV4=0.68,1.3e-09,1,1 GT:PL:GQ 0/1:132,0,215:99 chr3 39229900 . T C 222 . DP=70;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,38,29;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr3 39307256 . C T 225 . DP=141;VDB=0.0399;AF1=0.5;AC1=1;DP4=40,30,39,31;MQ=60;FQ=225;PV4=1,0.042,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 39323163 . A C 108 . DP=56;VDB=0.0271;AF1=0.5;AC1=1;DP4=12,19,6,19;MQ=60;FQ=111;PV4=0.27,2e-20,0.13,1 GT:PL:GQ 0/1:138,0,255:99 chr3 39373902 . C G 89 . DP=118;VDB=0.0322;AF1=0.5;AC1=1;DP4=53,17,28,18;MQ=60;FQ=92;PV4=0.1,1.1e-43,1,1 GT:PL:GQ 0/1:119,0,255:99 chr3 39433147 . G A 222 . DP=58;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,40;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr3 39437800 . A G 177 . DP=94;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,67,21;MQ=59;FQ=-282 GT:PL:GQ 1/1:210,255,0:99 chr3 39448204 . C T 23 . DP=17;VDB=0.0164;AF1=0.5;AC1=1;DP4=10,1,6,0;MQ=60;FQ=26;PV4=1,4.5e-06,1,1 GT:PL:GQ 0/1:53,0,192:56 chr3 39448424 . T C 126 . DP=55;VDB=0.0398;AF1=0.5;AC1=1;DP4=11,18,5,19;MQ=60;FQ=129;PV4=0.23,2.6e-11,0.14,0.42 GT:PL:GQ 0/1:156,0,255:99 chr3 39448581 . T G 222 . DP=31;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,9,21;MQ=59;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr3 39448620 . T C 72 . DP=13;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,5,1,6;MQ=58;FQ=75;PV4=1,0.0013,1,1 GT:PL:GQ 0/1:102,0,125:99 chr3 39449137 . T C 25.3 . DP=5;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,5,0;MQ=29;FQ=-42 GT:PL:GQ 1/1:58,15,0:27 chr3 39450065 . C T 128 . DP=70;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,28,10,16;MQ=60;FQ=131;PV4=0.79,1e-18,0.1,1 GT:PL:GQ 0/1:158,0,255:99 chr3 39450276 . CATA CATATA 67.5 . INDEL;DP=6;VDB=0.0343;AF1=0.5;AC1=1;DP4=0,3,1,1;MQ=60;FQ=69.8;PV4=0.4,1,1,0.33 GT:PL:GQ 0/1:105,0,113:99 chr3 39452106 . A G 10.4 . DP=9;VDB=0.0008;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=58;FQ=13.2;PV4=1,3.2e-06,0.18,1 GT:PL:GQ 0/1:40,0,98:42 chr3 39452772 . A G 168 . DP=29;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,12,3,7;MQ=60;FQ=171;PV4=1,1,1,0.19 GT:PL:GQ 0/1:198,0,255:99 chr3 39541386 . T C 86 . DP=21;VDB=0.0042;AF1=0.5;AC1=1;DP4=11,0,6,4;MQ=59;FQ=89;PV4=0.035,3e-09,1,0.095 GT:PL:GQ 0/1:116,0,165:99 chr3 39541478 . A G 225 . DP=79;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,15,18,13;MQ=60;FQ=225;PV4=0.81,1,1,0.42 GT:PL:GQ 0/1:255,0,255:99 chr3 39541550 . A G 225 . DP=73;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,24,11,19;MQ=60;FQ=225;PV4=0.81,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 39541713 . T A 3.54 . DP=4;VDB=0.0194;AF1=0.4998;AC1=1;DP4=0,2,0,2;MQ=60;FQ=5.46;PV4=1,0.0044,1,0.15 GT:PL:GQ 0/1:31,0,58:30 chr3 39554946 . C T 151 . DP=137;VDB=0.0345;AF1=0.5;AC1=1;DP4=43,38,27,29;MQ=60;FQ=154;PV4=0.61,6e-39,0.4,1 GT:PL:GQ 0/1:181,0,255:99 chr3 40204178 . T C 45 . DP=20;VDB=0.0042;AF1=0.5;AC1=1;DP4=9,1,8,1;MQ=60;FQ=48;PV4=1,1.4e-10,1,0.32 GT:PL:GQ 0/1:75,0,185:78 chr3 40208247 . G T 225 . DP=41;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,1,20,4;MQ=60;FQ=165;PV4=0.63,0.31,1,0.15 GT:PL:GQ 0/1:255,0,192:99 chr3 40208450 . C G 109 . DP=34;VDB=0.0099;AF1=0.5;AC1=1;DP4=7,11,4,12;MQ=59;FQ=112;PV4=0.48,1.5e-14,1,0.45 GT:PL:GQ 0/1:139,0,255:99 chr3 40231883 . C T 222 . DP=44;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,28;MQ=60;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr3 40251282 . G A 41 . DP=71;VDB=0.0380;AF1=0.5;AC1=1;DP4=31,11,17,8;MQ=60;FQ=44;PV4=0.78,4.5e-22,1,1 GT:PL:GQ 0/1:71,0,255:74 chr3 40251392 . T C 86 . DP=81;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,28,20,14;MQ=59;FQ=89;PV4=0.067,7.1e-27,1,1 GT:PL:GQ 0/1:116,0,255:99 chr3 40286017 . T C 207 . DP=24;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,9,4,7;MQ=60;FQ=190;PV4=0.67,1,1,1 GT:PL:GQ 0/1:237,0,217:99 chr3 40351484 . C T 174 . DP=63;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,15,8,24;MQ=60;FQ=177;PV4=0.26,8.5e-15,1,1 GT:PL:GQ 0/1:204,0,255:99 chr3 40352884 . C T 46 . DP=13;VDB=0.0011;AF1=0.5;AC1=1;DP4=6,0,7,0;MQ=60;FQ=49;PV4=1,3e-07,1,1 GT:PL:GQ 0/1:76,0,123:79 chr3 40353259 . T G 23 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:55,9,0:15 chr3 40353425 . CAGAG CAG 56.5 . INDEL;DP=13;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,4,3,0;MQ=60;FQ=59.5;PV4=0.5,1.3e-11,1,1 GT:PL:GQ 0/1:94,0,255:97 chr3 40435890 . A G 54 . DP=64;VDB=0.0384;AF1=0.5;AC1=1;DP4=24,13,21,2;MQ=60;FQ=57;PV4=0.031,6.8e-22,1,0.43 GT:PL:GQ 0/1:84,0,255:87 chr3 40442280 . G T 26 . DP=6;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,0,2,0;MQ=60;FQ=29;PV4=1,1,1,0.18 GT:PL:GQ 0/1:56,0,106:59 chr3 40442574 . AGAGGTCC A 56.5 . INDEL;DP=13;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,6,0,7;MQ=46;FQ=59.5;PV4=1,2.5e-06,0,0.41 GT:PL:GQ 0/1:94,0,209:97 chr3 40468896 . C T 225 . DP=72;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,28,10,20;MQ=60;FQ=225;PV4=1,0.17,0.12,0.3 GT:PL:GQ 0/1:255,0,255:99 chr3 40498845 . C T 192 . DP=41;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,10,12,14;MQ=59;FQ=153;PV4=0.3,2.4e-05,1,0.083 GT:PL:GQ 0/1:222,0,180:99 chr3 40498933 . A G 156 . DP=16;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,5,9;MQ=60;FQ=-69 GT:PL:GQ 1/1:189,42,0:81 chr3 40503506 . C T 6.2 . DP=22;VDB=0.0042;AF1=0.4999;AC1=1;DP4=13,2,6,1;MQ=30;FQ=8.65;PV4=1,1.8e-11,0.04,1 GT:PL:GQ 0/1:35,0,166:36 chr3 40503520 . Actgctgctgctgctgctgctgctgctgctgct ACTGCTGctgctgctgctgctgctgctgctgctgctgct,ACTGCTGCTGCTGCTGctgctgctgctgctgctgctgctgctgctgct 105 . INDEL;DP=23;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,4,4;MQ=32;FQ=-52.5 GT:PL:GQ 1/1:167,40,22,141,0,135:33 chr3 40503809 . G A 54 . DP=23;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,7,0,15;MQ=51;FQ=57;PV4=0.35,8.9e-16,1,0.42 GT:PL:GQ 0/1:84,0,145:87 chr3 40505886 . C G 105 . DP=25;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,22,2;MQ=60;FQ=-99 GT:PL:GQ 1/1:138,72,0:99 chr3 40519429 . T C 55 . DP=11;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:88,27,0:51 chr3 40519532 . C A 101 . DP=23;VDB=0.0393;AF1=0.5;AC1=1;DP4=1,6,6,9;MQ=59;FQ=97;PV4=0.35,5.1e-08,1,1 GT:PL:GQ 0/1:131,0,125:99 chr3 40557271 . Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg Ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 20.5 . INDEL;DP=17;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,1,3,0;MQ=60;FQ=23.5;PV4=1,0.017,1,0.47 GT:PL:GQ 0/1:58,0,129:61 chr3 41268824 . G A 116 . DP=32;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,8,6,11;MQ=59;FQ=119;PV4=0.72,4.8e-15,0.19,0.028 GT:PL:GQ 0/1:146,0,255:99 chr3 41274764 . C A 27.5 . DP=7;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:60,12,0:21 chr3 41279440 . A G 13.2 . DP=18;VDB=0.0118;AF1=0.5;AC1=1;DP4=8,2,7,1;MQ=59;FQ=16.1;PV4=1,7.7e-10,1,1 GT:PL:GQ 0/1:43,0,198:46 chr3 41291081 . G A 70 . DP=47;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,13,7,15;MQ=59;FQ=73;PV4=0.38,4.4e-13,0.15,1 GT:PL:GQ 0/1:100,0,255:99 chr3 41497115 . C G 48 . DP=31;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,13,1,11;MQ=59;FQ=51;PV4=0.36,4.2e-13,1,1 GT:PL:GQ 0/1:78,0,255:81 chr3 41607701 . C G 63 . DP=25;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,8,0,17;MQ=59;FQ=66;PV4=1,3.6e-09,1,1 GT:PL:GQ 0/1:93,0,123:96 chr3 41722976 . G A 75 . DP=30;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,4,11,3;MQ=58;FQ=78;PV4=1,1.4e-11,0.46,1 GT:PL:GQ 0/1:105,0,255:99 chr3 41796016 . A G 78 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:110,9,0:16 chr3 41841716 . A C 181 . DP=20;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,12;MQ=60;FQ=-84 GT:PL:GQ 1/1:214,57,0:99 chr3 41925301 . T C 75 . DP=9;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,9,0;MQ=55;FQ=-54 GT:PL:GQ 1/1:108,27,0:51 chr3 41925398 . C T 222 . DP=36;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,21,14;MQ=58;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr3 41925423 . T C 222 . DP=37;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,19;MQ=58;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr3 41937000 . C T 42.8 . DP=3;VDB=0.0225;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:74,6,0:10 chr3 41938500 . G C 143 . DP=17;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,3,13;MQ=60;FQ=-75 GT:PL:GQ 1/1:176,48,0:93 chr3 41939993 . T A 44 . DP=35;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,1,9;MQ=60;FQ=-57 GT:PL:GQ 1/1:77,30,0:57 chr3 41942199 . T C 222 . DP=50;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,31,16;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr3 41952781 . C T 193 . DP=45;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,37,7;MQ=59;FQ=-159 GT:PL:GQ 1/1:226,132,0:99 chr3 41957466 . T G 222 . DP=26;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,11,15;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr3 41960006 . T C 222 . DP=26;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,18;MQ=59;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr3 41977214 . C T 9.31 . DP=2;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr3 41977488 . CCT C 214 . INDEL;DP=60;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,39;MQ=59;FQ=-198 GT:PL:GQ 1/1:255,163,0:99 chr3 41996136 . T C 207 . DP=213;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,116,83;MQ=59;FQ=-282;PV4=1,3.1e-06,0.44,1 GT:PL:GQ 1/1:240,255,0:99 chr3 41996275 . A G 206 . DP=86;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,77;MQ=59;FQ=-280 GT:PL:GQ 1/1:239,253,0:99 chr3 42133149 . C G 83 . DP=46;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,21,4,19;MQ=59;FQ=86;PV4=0.67,3.1e-19,0.16,0.19 GT:PL:GQ 0/1:113,0,237:99 chr3 42202061 . G T 75 . DP=42;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,3,8;MQ=53;FQ=-60 GT:PL:GQ 1/1:108,33,0:63 chr3 42218095 . G C 15.9 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:47,6,0:10 chr3 42226151 . T C 197 . DP=35;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,15,19;MQ=59;FQ=-129 GT:PL:GQ 1/1:230,102,0:99 chr3 42234740 . G A 225 . DP=68;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,15,17,18;MQ=60;FQ=225;PV4=1,0.08,1,0.22 GT:PL:GQ 0/1:255,0,255:99 chr3 42234758 . C A 148 . DP=66;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,19,14,17;MQ=60;FQ=151;PV4=1,2.9e-21,0.15,1 GT:PL:GQ 0/1:178,0,255:99 chr3 42236415 . A G 222 . DP=48;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,28;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr3 42244321 . G A 184 . DP=60;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,29,28;MQ=60;FQ=-199 GT:PL:GQ 1/1:217,172,0:99 chr3 42251263 . C T 32 . DP=14;VDB=0.0190;AF1=0.5;AC1=1;DP4=7,0,6,0;MQ=60;FQ=35;PV4=1,1.1e-05,1,0.034 GT:PL:GQ 0/1:62,0,134:65 chr3 42251329 . C T 146 . DP=50;VDB=0.0216;AF1=0.5;AC1=1;DP4=12,4,18,12;MQ=60;FQ=149;PV4=0.35,1.6e-18,1,1 GT:PL:GQ 0/1:176,0,221:99 chr3 42251577 . Cggaggaggaggaggaggaggaggaggaggagg CGGAggaggaggaggaggaggaggaggaggaggagg 214 . INDEL;DP=30;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,2;MQ=60;FQ=-70.5 GT:PL:GQ 1/1:255,36,0:69 chr3 42251868 . CTTT CTT 100 . INDEL;DP=19;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,9,1,8;MQ=57;FQ=83.4;PV4=1,0.02,1,0.081 GT:PL:GQ 0/1:138,0,118:99 chr3 42264393 . A G 177 . DP=28;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,3,12,2;MQ=60;FQ=180;PV4=1,0.12,1,0.44 GT:PL:GQ 0/1:207,0,238:99 chr3 42264422 . T C 106 . DP=45;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,5,22,4;MQ=60;FQ=109;PV4=0.46,2.3e-13,1,0.32 GT:PL:GQ 0/1:136,0,255:99 chr3 42265270 . TCTCCTC TCTC 172 . INDEL;DP=23;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,12,1,9;MQ=53;FQ=175;PV4=0.45,0.028,0.00032,1 GT:PL:GQ 0/1:210,0,255:99 chr3 42265634 . C T 219 . DP=24;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,8,6,8;MQ=59;FQ=147;PV4=0.39,0.27,1,1 GT:PL:GQ 0/1:249,0,174:99 chr3 42304784 . A G 91 . DP=117;VDB=0.0365;AF1=0.5;AC1=1;DP4=33,20,38,22;MQ=60;FQ=94;PV4=1,9.7e-58,1,0.5 GT:PL:GQ 0/1:121,0,255:99 chr3 42305131 . C G 51.1 . DP=8;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:84,21,0:39 chr3 42438754 . T C 225 . DP=53;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,14,15,11;MQ=60;FQ=225;PV4=0.41,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 42445679 . C A 49 . DP=20;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,9,0,10;MQ=60;FQ=52;PV4=1,3.8e-08,1,1 GT:PL:GQ 0/1:79,0,146:82 chr3 42448296 . T C 225 . DP=65;VDB=0.0365;AF1=0.5;AC1=1;DP4=24,13,17,9;MQ=60;FQ=225;PV4=1,1,0.12,1 GT:PL:GQ 0/1:255,0,255:99 chr3 42572771 . ca c 111 . INDEL;DP=29;VDB=0.0019;AF1=0.5;AC1=1;DP4=18,1,9,1;MQ=60;FQ=114;PV4=1,6e-07,1,1 GT:PL:GQ 0/1:149,0,215:99 chr3 42728144 . A G 139 . DP=45;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,14,12,8;MQ=60;FQ=142;PV4=0.36,2.3e-15,1,0.35 GT:PL:GQ 0/1:169,0,255:99 chr3 42733468 . T C 225 . DP=68;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,31,6,19;MQ=60;FQ=225;PV4=1,0.067,0.1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 42735150 . T C 44 . DP=32;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,7,6,3;MQ=60;FQ=47;PV4=1,1.2e-07,1,1 GT:PL:GQ 0/1:74,0,255:77 chr3 42735274 . A G 43 . DP=16;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,9,1,5;MQ=60;FQ=46;PV4=0.4,5.7e-07,1,1 GT:PL:GQ 0/1:73,0,156:76 chr3 42754912 . A G 18.1 . DP=6;VDB=0.0089;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=21;PV4=1,0.00015,1,0.46 GT:PL:GQ 0/1:48,0,81:51 chr3 42772180 . C T 172 . DP=41;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,17,5,8;MQ=60;FQ=175;PV4=1,0.38,1,0.38 GT:PL:GQ 0/1:202,0,255:99 chr3 42774475 . G A 141 . DP=40;VDB=0.0140;AF1=0.5;AC1=1;DP4=6,14,6,14;MQ=59;FQ=144;PV4=1,1.7e-12,1,1 GT:PL:GQ 0/1:171,0,255:99 chr3 42781276 . G T 138 . DP=36;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,9,6,16;MQ=59;FQ=141;PV4=1,1.6e-11,1,1 GT:PL:GQ 0/1:168,0,207:99 chr3 42781316 . G A 80 . DP=22;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,5,3,13;MQ=59;FQ=79.5;PV4=1,5e-09,1,1 GT:PL:GQ 0/1:110,0,109:99 chr3 42784630 . A G 46 . DP=19;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,8,0,9;MQ=60;FQ=49;PV4=1,2.1e-09,1,1 GT:PL:GQ 0/1:76,0,171:79 chr3 42787469 . A G 27 . DP=24;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,10,5,2;MQ=60;FQ=30;PV4=0.37,1.1e-08,1,0.21 GT:PL:GQ 0/1:57,0,255:60 chr3 42793337 . T C 3.01 . DP=4;VDB=0.0184;AF1=0.4998;AC1=1;DP4=2,0,2,0;MQ=60;FQ=4.77;PV4=1,0.042,1,1 GT:PL:GQ 0/1:30,0,56:28 chr3 42799554 . Tacacacacacacacacacacacacacacacacac TACacacacacacacacacacacacacacacacacac,TACACacacacacacacacacacacacacacacacacac,Tacacacacacacacacacacacacacacacac 50.2 . INDEL;DP=4;VDB=0.0199;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:139,56,50,88,0,85,107,19,53,104:10 chr3 42799765 . G A 112 . DP=12;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,2,0,7;MQ=60;FQ=93;PV4=0.045,1,1,1 GT:PL:GQ 0/1:142,0,120:99 chr3 42799858 . T A 15.1 . DP=3;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:47,9,0:14 chr3 42835889 . A G 4.77 . DP=4;VDB=0.0020;AF1=0.5009;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-5.1;PV4=1,0.077,1,0.037 GT:PL:GQ 0/1:33,0,24:28 chr3 42907112 . A C 110 . DP=48;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,15,8,12;MQ=59;FQ=113;PV4=1,1.9e-10,1,1 GT:PL:GQ 0/1:140,0,255:99 chr3 42916891 . TAA TAAA 217 . INDEL;DP=58;VDB=0.0393;AF1=0.5;AC1=1;DP4=16,15,15,9;MQ=60;FQ=217;PV4=0.58,1,1,0.19 GT:PL:GQ 0/1:255,0,255:99 chr3 42917047 . A G 192 . DP=95;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,47,41;MQ=60;FQ=-282 GT:PL:GQ 1/1:225,255,0:99 chr3 42954912 . C T 39.1 . DP=7;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:72,21,0:39 chr3 42956273 . T C 222 . DP=63;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,34;MQ=59;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr3 43073761 . G A 222 . DP=60;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,39,19;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr3 43074430 . A G 177 . DP=47;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,24,21;MQ=59;FQ=-162 GT:PL:GQ 1/1:210,135,0:99 chr3 43074434 . C T 222 . DP=48;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,20;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr3 43074871 . A G 222 . DP=50;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,22,24;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr3 43095101 . A G 222 . DP=93;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,51,39;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 43096875 . G A 225 . DP=58;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,15,14,9;MQ=60;FQ=225;PV4=0.79,1,0.11,1 GT:PL:GQ 0/1:255,0,255:99 chr3 43097710 . A G 222 . DP=30;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,17,12;MQ=60;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr3 43121559 . C T 222 . DP=91;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,43,45;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 43122966 . G A 89 . DP=13;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,5;MQ=60;FQ=-54 GT:PL:GQ 1/1:122,27,0:51 chr3 43414318 . A G 200 . DP=35;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,18,15;MQ=59;FQ=-126 GT:PL:GQ 1/1:233,99,0:99 chr3 43591327 . G A 225 . DP=61;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,24,10,21;MQ=60;FQ=225;PV4=0.13,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 43591405 . T C 57 . DP=21;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,15;MQ=59;FQ=-75 GT:PL:GQ 1/1:90,48,0:92 chr3 43592906 . T C 222 . DP=64;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,54,1;MQ=59;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr3 43618280 . T C 157 . DP=102;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,34,18,25;MQ=60;FQ=160;PV4=0.84,8.1e-28,0.053,1 GT:PL:GQ 0/1:187,0,255:99 chr3 43642126 . C A 15.6 . DP=4;VDB=0.0301;AF1=1;AC1=2;DP4=0,0,0,4;MQ=44;FQ=-39 GT:PL:GQ 1/1:48,12,0:20 chr3 43756577 . Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt CTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt,CTGTGTGtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 112 . INDEL;DP=32;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,2,0,11;MQ=52;FQ=14.6;PV4=1,1,0.17,0.34 GT:PL:GQ 0/1:161,11,60,101,0,153:52 chr3 44283672 . T C 154 . DP=13;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,3;MQ=60;FQ=-57 GT:PL:GQ 1/1:187,30,0:57 chr3 44283808 . C A 211 . DP=61;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,38,18;MQ=60;FQ=-196 GT:PL:GQ 1/1:244,169,0:99 chr3 44310592 . T C 36.8 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:68,6,0:10 chr3 44332176 . T C 181 . DP=24;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,18,6;MQ=60;FQ=-99 GT:PL:GQ 1/1:214,72,0:99 chr3 44345646 . A T 111 . DP=17;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,5,11;MQ=60;FQ=-75 GT:PL:GQ 1/1:144,48,0:93 chr3 44399668 . T C 104 . DP=29;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,26,2;MQ=60;FQ=-111 GT:PL:GQ 1/1:137,84,0:99 chr3 44437870 . A C 222 . DP=30;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,13,17;MQ=59;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr3 44540791 . TTCTCTC TTCTC 214 . INDEL;DP=78;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,36,37;MQ=59;FQ=-255 GT:PL:GQ 1/1:255,220,0:99 chr3 44761729 . A G 120 . DP=28;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,2,10,4;MQ=59;FQ=123;PV4=0.66,1.5e-07,1,1 GT:PL:GQ 0/1:150,0,190:99 chr3 44762830 . A G 137 . DP=62;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,23,8,19;MQ=60;FQ=140;PV4=1,2.2e-25,1,0.46 GT:PL:GQ 0/1:167,0,255:99 chr3 44763037 . A C 55 . DP=12;VDB=0.0003;AF1=0.5;AC1=1;DP4=2,5,2,3;MQ=60;FQ=58;PV4=1,6.4e-07,1,0.11 GT:PL:GQ 0/1:85,0,181:88 chr3 44775962 . A G 222 . DP=72;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,51,21;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr3 44794881 . A C 144 . DP=54;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,10,19,16;MQ=46;FQ=147;PV4=0.57,4.9e-14,0.36,1 GT:PL:GQ 0/1:174,0,241:99 chr3 44803108 . AAAGACAGAAGACAG AAAGACAG 214 . INDEL;DP=61;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,22,24;MQ=31;FQ=-173 GT:PL:GQ 1/1:255,138,0:99 chr3 44803130 . G A 152 . DP=54;VDB=0.0216;AF1=0.5;AC1=1;DP4=8,20,10,15;MQ=32;FQ=155;PV4=0.4,2.6e-16,0.32,1 GT:PL:GQ 0/1:182,0,238:99 chr3 44816952 . Ctttttttttttttt Ctttttttttttt,Cttttttttttttt 6.65 . INDEL;DP=13;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:46,18,0,48,12,45:20 chr3 44819565 . T G 101 . DP=112;VDB=0.0190;AF1=0.5;AC1=1;DP4=49,6,46,11;MQ=60;FQ=104;PV4=0.29,9.2e-55,1,1 GT:PL:GQ 0/1:131,0,255:99 chr3 44826315 . GTTTTTTTTTT GTTTTTTTTTTT 5.8 . INDEL;DP=10;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-61.5 GT:PL:GQ 1/1:45,27,0:28 chr3 44827793 . T C 51 . DP=9;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:84,24,0:45 chr3 44840612 . AT ATT 140 . INDEL;DP=9;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,9,0;MQ=57;FQ=-61.5 GT:PL:GQ 1/1:181,27,0:51 chr3 44854563 . A G 109 . DP=66;VDB=0.0345;AF1=0.5;AC1=1;DP4=24,9,26,6;MQ=59;FQ=112;PV4=0.56,6.5e-20,1,1 GT:PL:GQ 0/1:139,0,255:99 chr3 44869026 . A T 127 . DP=64;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,13,21;MQ=60;FQ=-129 GT:PL:GQ 1/1:160,102,0:99 chr3 44869851 . A G 225 . DP=77;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,27,7,38;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 44881909 . A G 101 . DP=23;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,9,5,6;MQ=60;FQ=104;PV4=0.4,8.1e-09,1,1 GT:PL:GQ 0/1:131,0,224:99 chr3 44884647 . C A 160 . DP=60;VDB=0.0384;AF1=0.5;AC1=1;DP4=13,16,16,13;MQ=60;FQ=163;PV4=0.6,6.5e-20,1,0.17 GT:PL:GQ 0/1:190,0,255:99 chr3 44905782 . A G 193 . DP=43;VDB=0.0398;AF1=0.5;AC1=1;DP4=16,12,8,7;MQ=60;FQ=196;PV4=1,0.22,1,0.41 GT:PL:GQ 0/1:223,0,255:99 chr3 44906746 . A G 222 . DP=55;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,7,43;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr3 44929287 . G C 182 . DP=66;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,18,15,18;MQ=60;FQ=185;PV4=1,1.6e-16,1,1 GT:PL:GQ 0/1:212,0,255:99 chr3 44943069 . C T 225 . DP=67;VDB=0.0298;AF1=0.5;AC1=1;DP4=22,10,23,12;MQ=60;FQ=225;PV4=1,0.031,1,0.43 GT:PL:GQ 0/1:255,0,255:99 chr3 44943104 . G C 225 . DP=89;VDB=0.0400;AF1=0.5;AC1=1;DP4=28,17,23,19;MQ=59;FQ=225;PV4=0.52,0.19,0.48,1 GT:PL:GQ 0/1:255,0,255:99 chr3 44943389 . G A 173 . DP=47;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,10,13,13;MQ=60;FQ=176;PV4=1,1.1e-08,1,1 GT:PL:GQ 0/1:203,0,255:99 chr3 44948479 . C T 162 . DP=46;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,4,19,8;MQ=60;FQ=165;PV4=0.73,2.9e-18,1,1 GT:PL:GQ 0/1:192,0,255:99 chr3 44948590 . G A 225 . DP=87;VDB=0.0400;AF1=0.5;AC1=1;DP4=24,28,12,22;MQ=60;FQ=225;PV4=0.38,0.18,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 44948770 . G A 35 . DP=16;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,8,0,8;MQ=59;FQ=38;PV4=1,0.00066,0.17,1 GT:PL:GQ 0/1:65,0,117:68 chr3 44952407 . G C 27 . DP=16;VDB=0.0099;AF1=0.5;AC1=1;DP4=7,1,7,0;MQ=60;FQ=30;PV4=1,1.1e-09,1,1 GT:PL:GQ 0/1:57,0,147:60 chr3 44952942 . A C 14.2 . DP=3;VDB=0.0099;AF1=0.501;AC1=1;DP4=0,1,0,2;MQ=52;FQ=-4.78;PV4=1,0.41,0.33,0.39 GT:PL:GQ 0/1:44,0,24:27 chr3 44986836 . T C 69 . DP=18;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,6,1,8;MQ=60;FQ=72;PV4=0.58,1.1e-05,1,1 GT:PL:GQ 0/1:99,0,198:99 chr3 45017904 . A T 112 . DP=25;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,9;MQ=60;FQ=-69 GT:PL:GQ 1/1:145,42,0:81 chr3 45017905 . G T 109 . DP=24;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,9;MQ=60;FQ=-69 GT:PL:GQ 1/1:142,42,0:81 chr3 45049186 . A G 21 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:53,9,0:15 chr3 45052775 . G C 222 . DP=76;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,55,17;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr3 45068074 . A G 75 . DP=22;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,18;MQ=60;FQ=-87 GT:PL:GQ 1/1:108,60,0:99 chr3 45077123 . G A 219 . DP=73;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,28,41;MQ=60;FQ=-235 GT:PL:GQ 1/1:252,208,0:99 chr3 45077458 . G A 5.29 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:35,6,0:6 chr3 45127515 . T C 222 . DP=62;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,30,32;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr3 45134822 . T C 195 . DP=25;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,18,7;MQ=60;FQ=-102 GT:PL:GQ 1/1:228,75,0:99 chr3 45153708 . G A 166 . DP=65;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,14,18,14;MQ=60;FQ=169;PV4=1,3.5e-20,0.16,1 GT:PL:GQ 0/1:196,0,255:99 chr3 45267310 . C T 59.5 . DP=4;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:92,12,0:21 chr3 45267321 . C T 36 . DP=4;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:68,9,0:16 chr3 45461102 . GTT GTTT 214 . INDEL;DP=82;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,65,16;MQ=59;FQ=-279 GT:PL:GQ 1/1:255,244,0:99 chr3 45500174 . C A 121 . DP=29;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,23,2;MQ=56;FQ=-102 GT:PL:GQ 1/1:154,75,0:99 chr3 45515648 . T C 66 . DP=12;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:99,36,0:69 chr3 45518046 . G C 108 . DP=61;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,14,16,15;MQ=60;FQ=111;PV4=1,8.1e-21,1,0.19 GT:PL:GQ 0/1:138,0,255:99 chr3 45527099 . C G 222 . DP=64;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,41,22;MQ=60;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr3 45527218 . T C 222 . DP=73;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,35,35;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr3 45530401 . G A 222 . DP=34;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,4,30;MQ=60;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr3 45533224 . G A 222 . DP=49;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,32;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr3 45542083 . T C 222 . DP=27;VDB=0.0190;AF1=1;AC1=2;DP4=0,1,4,21;MQ=59;FQ=-87;PV4=1,1,1,1 GT:PL:GQ 1/1:255,60,0:99 chr3 45559519 . T C 222 . DP=47;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,28;MQ=59;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr3 45565554 . A G 222 . DP=45;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,16,28;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr3 45637253 . C T 188 . DP=54;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,25,25;MQ=60;FQ=-178 GT:PL:GQ 1/1:221,151,0:99 chr3 45637439 . T C 222 . DP=54;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,25,27;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr3 45677635 . CT CTT 20.1 . INDEL;DP=103;VDB=0.0298;AF1=0.5939;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-29.5;PV4=1,1,1,0.004 GT:PL:GQ 0/1:57,0,5:8 chr3 45677782 . G A 56 . DP=12;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,7,0,5;MQ=44;FQ=59;PV4=1,1,0.45,0.098 GT:PL:GQ 0/1:86,0,117:89 chr3 45677815 . GAGA GAGAAGA 46.7 . INDEL;DP=6;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,5;MQ=25;FQ=-49.5 GT:PL:GQ 1/1:87,15,0:27 chr3 45715688 . G A 25 . DP=12;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,2,5,0;MQ=60;FQ=28;PV4=0.47,1.9e-05,1,1 GT:PL:GQ 0/1:55,0,170:58 chr3 45715769 . T C 225 . DP=52;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,8,20,7;MQ=59;FQ=225;PV4=0.55,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 45748429 . G A 58 . DP=28;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,10,4,5;MQ=60;FQ=61;PV4=1,9.9e-10,1,0.33 GT:PL:GQ 0/1:88,0,255:91 chr3 45748435 . A G 33 . DP=26;VDB=0.0373;AF1=0.5;AC1=1;DP4=7,10,2,6;MQ=60;FQ=36;PV4=0.66,1.6e-07,1,0.13 GT:PL:GQ 0/1:63,0,255:66 chr3 45754685 . A G 105 . DP=30;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,8,8,6;MQ=60;FQ=108;PV4=0.73,3.2e-08,1,1 GT:PL:GQ 0/1:135,0,255:99 chr3 45754749 . G A 173 . DP=19;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,6,2,8;MQ=60;FQ=150;PV4=1,0.47,1,1 GT:PL:GQ 0/1:203,0,177:99 chr3 45755636 . G C 35 . DP=3;VDB=0.0124;AF1=0.5006;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-3.53;PV4=1,1,1,1 GT:PL:GQ 0/1:65,0,26:29 chr3 45761115 . G C 192 . DP=50;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,25,24;MQ=60;FQ=-175 GT:PL:GQ 1/1:225,148,0:99 chr3 45763635 . A G 222 . DP=126;VDB=0.0298;AF1=1;AC1=2;DP4=1,0,28,94;MQ=59;FQ=-282;PV4=0.24,1.8e-08,1,0.23 GT:PL:GQ 1/1:255,255,0:99 chr3 45764246 . A G 53.1 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:86,18,0:33 chr3 45764544 . T C 222 . DP=28;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,22;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr3 45764578 . C T 43 . DP=9;VDB=0.0001;AF1=0.5;AC1=1;DP4=0,3,0,6;MQ=60;FQ=41.3;PV4=1,5.9e-07,1,0.016 GT:PL:GQ 0/1:73,0,70:71 chr3 45772742 . T C 77 . DP=23;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:110,36,0:69 chr3 45772772 . G A 157 . DP=36;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,31,3;MQ=60;FQ=-129 GT:PL:GQ 1/1:190,102,0:99 chr3 45773732 . G A 74 . DP=15;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,15;MQ=58;FQ=-72 GT:PL:GQ 1/1:107,45,0:87 chr3 45776900 . A G 49 . DP=17;VDB=0.0393;AF1=0.5;AC1=1;DP4=1,8,1,6;MQ=59;FQ=52;PV4=1,9.3e-07,0.14,0.12 GT:PL:GQ 0/1:79,0,175:82 chr3 45779136 . A T 143 . DP=21;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,9;MQ=60;FQ=-90 GT:PL:GQ 1/1:176,63,0:99 chr3 45781188 . T G 51 . DP=26;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,9,1,13;MQ=60;FQ=54;PV4=0.56,2.8e-12,1,1 GT:PL:GQ 0/1:81,0,197:84 chr3 45784963 . T C 16.1 . DP=6;VDB=0.0011;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=50;FQ=17.6;PV4=1,0.0078,0.11,1 GT:PL:GQ 0/1:46,0,50:47 chr3 45784972 . GGT G 111 . INDEL;DP=8;VDB=0.0008;AF1=0.5;AC1=1;DP4=3,0,4,1;MQ=51;FQ=95.4;PV4=1,0.026,0.058,1 GT:PL:GQ 0/1:149,0,130:99 chr3 45799871 . C T 211 . DP=26;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,11,10;MQ=60;FQ=-90 GT:PL:GQ 1/1:244,63,0:99 chr3 45812650 . C T 112 . DP=13;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,0,6,1;MQ=58;FQ=97.9;PV4=1,0.061,0.19,0.12 GT:PL:GQ 0/1:142,0,125:99 chr3 45813993 . G A 225 . DP=93;VDB=0.0400;AF1=0.5;AC1=1;DP4=30,15,33,14;MQ=59;FQ=225;PV4=0.82,0.19,1,0.011 GT:PL:GQ 0/1:255,0,255:99 chr3 45817418 . A G 222 . DP=102;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,46,51;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 45821624 . T C 166 . DP=22;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,3,16;MQ=59;FQ=-84 GT:PL:GQ 1/1:199,57,0:99 chr3 45823534 . C T 25 . DP=6;VDB=0.0014;AF1=0.5013;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-5.45;PV4=1,0.0072,1,0.17 GT:PL:GQ 0/1:55,0,23:26 chr3 45938939 . G A 33 . DP=3;VDB=0.0099;AF1=0.5004;AC1=1;DP4=1,0,2,0;MQ=60;FQ=3.55;PV4=1,1,1,1 GT:PL:GQ 0/1:63,0,28:31 chr3 45977899 . T C 200 . DP=12;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:233,36,0:69 chr3 45979877 . G A 38 . DP=14;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,7,0,7;MQ=60;FQ=41;PV4=1,1.3e-11,1,0.053 GT:PL:GQ 0/1:68,0,144:71 chr3 45996761 . G A 36 . DP=9;VDB=0.0095;AF1=0.5;AC1=1;DP4=4,1,3,1;MQ=60;FQ=39;PV4=1,0.00044,1,1 GT:PL:GQ 0/1:66,0,124:69 chr3 46009491 . C T 174 . DP=164;VDB=0.0380;AF1=0.5;AC1=1;DP4=56,32,37,36;MQ=59;FQ=177;PV4=0.11,1.4e-41,0.058,1 GT:PL:GQ 0/1:204,0,255:99 chr3 46010077 . C T 145 . DP=105;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,26,14,46;MQ=60;FQ=148;PV4=0.18,1.3e-37,0.21,0.49 GT:PL:GQ 0/1:175,0,255:99 chr3 46021218 . G T 221 . DP=26;VDB=0.0373;AF1=0.5;AC1=1;DP4=5,4,13,4;MQ=59;FQ=155;PV4=0.38,0.27,0.24,0.093 GT:PL:GQ 0/1:251,0,182:99 chr3 46021452 . T G 4.77 . DP=11;VDB=0.0014;AF1=0.4999;AC1=1;DP4=1,6,1,3;MQ=60;FQ=6.99;PV4=1,2.1e-05,1,1 GT:PL:GQ 0/1:33,0,156:33 chr3 46026209 . CAA CA 124 . INDEL;DP=17;VDB=0.0118;AF1=0.5;AC1=1;DP4=6,1,9,1;MQ=60;FQ=106;PV4=1,0.073,1,0.4 GT:PL:GQ 0/1:162,0,141:99 chr3 46479668 . A G 31 . DP=15;VDB=0.0060;AF1=0.5;AC1=1;DP4=0,12,0,3;MQ=60;FQ=34;PV4=1,1,1,1 GT:PL:GQ 0/1:61,0,174:64 chr3 46480958 . C G 116 . DP=42;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,19,4,13;MQ=59;FQ=119;PV4=1,5.1e-14,0.12,1 GT:PL:GQ 0/1:146,0,255:99 chr3 46480994 . A G 168 . DP=30;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,13,2,11;MQ=60;FQ=171;PV4=1,1,1,1 GT:PL:GQ 0/1:198,0,231:99 chr3 46501284 . CCT CCTTCT 214 . INDEL;DP=14;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,9;MQ=58;FQ=-70.5 GT:PL:GQ 1/1:255,36,0:69 chr3 46574256 . C T 97 . DP=41;VDB=0.0393;AF1=0.5;AC1=1;DP4=14,7,11,7;MQ=60;FQ=100;PV4=0.75,2.4e-17,1,1 GT:PL:GQ 0/1:127,0,255:99 chr3 46574418 . A G 42 . DP=25;VDB=0.0042;AF1=0.5;AC1=1;DP4=6,11,1,7;MQ=60;FQ=45;PV4=0.36,1.3e-08,1,1 GT:PL:GQ 0/1:72,0,255:75 chr3 46580591 . G T 225 . DP=74;VDB=0.0298;AF1=0.5;AC1=1;DP4=18,23,13,19;MQ=59;FQ=225;PV4=0.82,1,0.43,1 GT:PL:GQ 0/1:255,0,255:99 chr3 46593147 . A G 69 . DP=8;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:102,24,0:45 chr3 46620614 . T C 64 . DP=35;VDB=0.0398;AF1=0.5;AC1=1;DP4=15,7,8,3;MQ=60;FQ=67;PV4=1,9e-14,1,0.26 GT:PL:GQ 0/1:94,0,255:97 chr3 46621354 . C T 81 . DP=22;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,5,8,2;MQ=59;FQ=84;PV4=0.36,1.5e-05,0.15,0.15 GT:PL:GQ 0/1:111,0,219:99 chr3 46654132 . G A 222 . DP=83;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,51,31;MQ=60;FQ=-274 GT:PL:GQ 1/1:255,247,0:99 chr3 46658737 . A G 222 . DP=134;VDB=0.0400;AF1=1;AC1=2;DP4=1,0,57,69;MQ=59;FQ=-282;PV4=0.46,1,0.43,0.22 GT:PL:GQ 1/1:255,255,0:99 chr3 46658872 . G T 127 . DP=20;VDB=0.0244;AF1=1;AC1=2;DP4=0,1,2,17;MQ=60;FQ=-70;PV4=1,1,1,1 GT:PL:GQ 1/1:160,43,0:83 chr3 46713457 . C G 127 . DP=110;VDB=0.0399;AF1=0.5;AC1=1;DP4=32,22,31,21;MQ=60;FQ=130;PV4=1,9.5e-36,0.16,0.18 GT:PL:GQ 0/1:157,0,255:99 chr3 46715001 . C T 62 . DP=16;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,6,3,5;MQ=60;FQ=65;PV4=0.57,1.8e-09,1,0.0035 GT:PL:GQ 0/1:92,0,160:95 chr3 46717931 . T C 91 . DP=31;VDB=0.0393;AF1=0.5;AC1=1;DP4=3,9,1,16;MQ=58;FQ=94;PV4=0.28,1.6e-08,1,0.32 GT:PL:GQ 0/1:121,0,203:99 chr3 46717957 . A G 138 . DP=17;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,5,1,9;MQ=59;FQ=112;PV4=0.54,0.45,1,1 GT:PL:GQ 0/1:168,0,139:99 chr3 46718298 . A G 106 . DP=28;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,7,9,4;MQ=60;FQ=109;PV4=0.22,0.00023,1,1 GT:PL:GQ 0/1:136,0,193:99 chr3 46722692 . G T 186 . DP=115;VDB=0.0365;AF1=0.5;AC1=1;DP4=36,19,30,26;MQ=60;FQ=189;PV4=0.25,7.1e-28,0.16,1 GT:PL:GQ 0/1:216,0,255:99 chr3 46729757 . C G 183 . DP=25;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,12,2,11;MQ=60;FQ=132;PV4=0.48,1,1,1 GT:PL:GQ 0/1:213,0,159:99 chr3 46730749 . A G 87 . DP=58;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,12,13,5;MQ=60;FQ=90;PV4=1,1.6e-20,1,1 GT:PL:GQ 0/1:117,0,255:99 chr3 46750553 . G A 16.1 . DP=10;VDB=0.0161;AF1=0.5;AC1=1;DP4=6,0,4,0;MQ=60;FQ=19.1;PV4=1,0.0066,1,1 GT:PL:GQ 0/1:46,0,111:49 chr3 46751073 . Taagaagaagaagaagaagaagaagaag Taagaagaagaagaagaagaagaag 217 . INDEL;DP=31;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,5,7,4;MQ=58;FQ=217;PV4=1,0.028,0.052,1 GT:PL:GQ 0/1:255,0,255:99 chr3 46933960 . C G 225 . DP=63;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,19,13,15;MQ=60;FQ=225;PV4=1,0.086,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 46939696 . T C 135 . DP=109;VDB=0.0398;AF1=0.5;AC1=1;DP4=20,32,22,29;MQ=59;FQ=138;PV4=0.69,2.6e-25,0.083,0.29 GT:PL:GQ 0/1:165,0,255:99 chr3 46940001 . aggggggg aGggggggg 18.5 . INDEL;DP=39;VDB=0.0322;AF1=0.5001;AC1=1;DP4=17,1,9,6;MQ=60;FQ=-3.3;PV4=0.03,1,1,0.1 GT:PL:GQ 0/1:56,0,34:37 chr3 46943028 . T C 7.8 . DP=11;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,4,1,3;MQ=60;FQ=10.4;PV4=1,0.0005,1,1 GT:PL:GQ 0/1:37,0,120:39 chr3 46944274 . T C 222 . DP=85;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,50,30;MQ=59;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr3 46944368 . T C 95 . DP=90;VDB=0.0393;AF1=0.5;AC1=1;DP4=31,20,17,19;MQ=60;FQ=98;PV4=0.27,3e-41,1,1 GT:PL:GQ 0/1:125,0,255:99 chr3 46963502 . T C 25.3 . DP=5;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:58,15,0:27 chr3 46965111 . C T 225 . DP=64;VDB=0.0398;AF1=0.5;AC1=1;DP4=8,13,10,29;MQ=60;FQ=224;PV4=0.38,1,1,1 GT:PL:GQ 0/1:255,0,253:99 chr3 46965197 . C G 170 . DP=27;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,23;MQ=59;FQ=-105 GT:PL:GQ 1/1:203,78,0:99 chr3 46967040 . G A 161 . DP=34;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,8,25;MQ=59;FQ=-126 GT:PL:GQ 1/1:194,99,0:99 chr3 46982365 . T C 222 . DP=16;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,14,2;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr3 47018214 . T C 222 . DP=69;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,29,36;MQ=59;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr3 47029661 . G A 222 . DP=40;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,14,24;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr3 47033937 . C T 80 . DP=9;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:113,27,0:51 chr3 47035625 . G A 58 . DP=14;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:91,39,0:75 chr3 47038135 . C CA 133 . INDEL;DP=30;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,11,18;MQ=59;FQ=-122 GT:PL:GQ 1/1:174,87,0:99 chr3 47043538 . C T 173 . DP=47;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,22,21;MQ=60;FQ=-156 GT:PL:GQ 1/1:206,129,0:99 chr3 47044122 . A T 210 . DP=56;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,35;MQ=60;FQ=-190 GT:PL:GQ 1/1:243,163,0:99 chr3 47045739 . C G 222 . DP=160;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,49,100;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 47045846 . C T 146 . DP=81;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,22,43;MQ=60;FQ=-223 GT:PL:GQ 1/1:179,196,0:99 chr3 47046485 . C T 225 . DP=89;VDB=0.0392;AF1=0.5;AC1=1;DP4=30,14,31,12;MQ=59;FQ=225;PV4=0.82,0.48,0.49,1 GT:PL:GQ 0/1:255,0,255:99 chr3 47046842 . G C 56 . DP=19;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,16;MQ=60;FQ=-75 GT:PL:GQ 1/1:89,48,0:92 chr3 47047176 . AGGGGG AGGGGGG 183 . INDEL;DP=62;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,38;MQ=60;FQ=-210 GT:PL:GQ 1/1:224,175,0:99 chr3 47050908 . AGGGGGG AGGGGG 74.5 . INDEL;DP=25;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,2,22;MQ=59;FQ=-107 GT:PL:GQ 1/1:115,72,0:99 chr3 47059323 . C T 25 . DP=4;VDB=0.0059;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:57,9,0:15 chr3 47061183 . G A 50.3 . DP=15;VDB=0.0099;AF1=1;AC1=2;DP4=1,0,12,1;MQ=58;FQ=-41;PV4=1,0.00022,0.4,0.32 GT:PL:GQ 1/1:83,14,0:25 chr3 47079112 . G A 145 . DP=20;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,3;MQ=60;FQ=-87 GT:PL:GQ 1/1:178,60,0:99 chr3 47103861 . GTTTTTTTTTTTTTT GTTTTTTTTTTTT,GTTTTTTTTTTT 71.5 . INDEL;DP=26;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,6,10;MQ=58;FQ=-79.5 GT:PL:GQ 1/1:112,45,0,105,27,102:87 chr3 47125385 . G A 222 . DP=153;VDB=0.0399;AF1=1;AC1=2;DP4=1,0,88,53;MQ=60;FQ=-282;PV4=1,0.015,1,0.2 GT:PL:GQ 1/1:255,255,0:99 chr3 47142907 . TCCCC TCC 214 . INDEL;DP=18;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,18,0;MQ=60;FQ=-88.5 GT:PL:GQ 1/1:255,54,0:99 chr3 47147076 . G A 49 . DP=7;VDB=0.0116;AF1=0.5;AC1=1;DP4=4,0,3,0;MQ=60;FQ=52;PV4=1,0.27,1,1 GT:PL:GQ 0/1:79,0,105:82 chr3 47161214 . T C 201 . DP=13;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,12,1;MQ=58;FQ=-66 GT:PL:GQ 1/1:234,39,0:75 chr3 47162661 . A G 222 . DP=105;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,36,62;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 47187075 . C G 222 . DP=27;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,12,15;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr3 47276968 . C T 111 . DP=33;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,25,5;MQ=60;FQ=-117 GT:PL:GQ 1/1:144,90,0:99 chr3 47277458 . A G 102 . DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:135,15,0:27 chr3 47282303 . G A 222 . DP=30;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,24,5;MQ=59;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr3 47286227 . G T 72 . DP=8;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,8,0;MQ=57;FQ=-51 GT:PL:GQ 1/1:105,24,0:45 chr3 47287603 . A AT 214 . INDEL;DP=16;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,13,2;MQ=60;FQ=-79.5 GT:PL:GQ 1/1:255,45,0:87 chr3 47316725 . G A 81 . DP=8;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:114,24,0:45 chr3 47318747 . T G 174 . DP=93;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,63,28;MQ=59;FQ=-282 GT:PL:GQ 1/1:207,255,0:99 chr3 47322496 . C T 140 . DP=77;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,36,22;MQ=60;FQ=-202 GT:PL:GQ 1/1:173,175,0:99 chr3 47376095 . A G 153 . DP=44;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,34,7;MQ=60;FQ=-150 GT:PL:GQ 1/1:186,123,0:99 chr3 47449058 . T C 222 . DP=86;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,21,61;MQ=59;FQ=-274 GT:PL:GQ 1/1:255,247,0:99 chr3 47452087 . G A 222 . DP=86;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,58,27;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 47452786 . G A 222 . DP=51;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,23;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr3 47454399 . G A 202 . DP=34;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,10;MQ=59;FQ=-78 GT:PL:GQ 1/1:235,51,0:99 chr3 47456225 . T C 214 . DP=31;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,14,16;MQ=59;FQ=-117 GT:PL:GQ 1/1:247,90,0:99 chr3 47459679 . C T 222 . DP=38;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,25,12;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr3 47462200 . T C 82 . DP=12;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:115,33,0:63 chr3 47462587 . A G 222 . DP=41;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,6,33;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr3 47464122 . A G 222 . DP=49;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,16,32;MQ=59;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr3 47539751 . T C 204 . DP=56;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,21,31;MQ=60;FQ=-184 GT:PL:GQ 1/1:237,157,0:99 chr3 47539969 . C T 156 . DP=35;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,4,31;MQ=60;FQ=-132 GT:PL:GQ 1/1:189,105,0:99 chr3 47543389 . G A 222 . DP=71;VDB=0.0345;AF1=1;AC1=2;DP4=0,1,22,47;MQ=59;FQ=-212;PV4=1,1,0.43,0.39 GT:PL:GQ 1/1:255,185,0:99 chr3 47555142 . C A 222 . DP=105;VDB=0.0392;AF1=1;AC1=2;DP4=1,0,37,63;MQ=59;FQ=-282;PV4=0.38,1,0.43,0.24 GT:PL:GQ 1/1:255,255,0:99 chr3 47604299 . C T 13.9 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr3 47618953 . C A 222 . DP=55;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,20,33;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr3 47680066 . C T 47 . DP=8;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:80,24,0:45 chr3 47680119 . T C 93 . DP=21;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,18,1;MQ=59;FQ=-84 GT:PL:GQ 1/1:126,57,0:99 chr3 47712202 . T C 49 . DP=77;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,18,9,23;MQ=60;FQ=52;PV4=0.3,4.1e-27,1,0.49 GT:PL:GQ 0/1:79,0,255:82 chr3 47762030 . A G 127 . DP=9;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:160,24,0:45 chr3 48019232 . A G 78 . DP=30;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,27,1;MQ=60;FQ=-111 GT:PL:GQ 1/1:111,84,0:99 chr3 48019258 . A G 222 . DP=50;VDB=0.0216;AF1=1;AC1=2;DP4=1,0,43,4;MQ=60;FQ=-142;PV4=1,0.29,1,1 GT:PL:GQ 1/1:255,115,0:99 chr3 48209486 . C T 222 . DP=50;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,11,37;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr3 48219320 . AACACACACACACACACAC AACACACACACACACAC 214 . INDEL;DP=64;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,41,16;MQ=59;FQ=-204 GT:PL:GQ 1/1:255,169,0:99 chr3 48225509 . T C 24.5 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:57,12,0:21 chr3 48414197 . A T 160 . DP=45;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,36,7;MQ=60;FQ=-156 GT:PL:GQ 1/1:193,129,0:99 chr3 48414215 . G A 209 . DP=44;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,34,9;MQ=60;FQ=-156 GT:PL:GQ 1/1:242,129,0:99 chr3 48419723 . G T 48.5 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:81,12,0:21 chr3 48422235 . T A 140 . DP=37;VDB=0.0271;AF1=1;AC1=2;DP4=1,0,31,4;MQ=59;FQ=-96;PV4=1,7.3e-06,0.43,0.16 GT:PL:GQ 1/1:173,69,0:99 chr3 48450706 . TCCCCCCC TCCCCCC 37.5 . INDEL;DP=10;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,8,2;MQ=60;FQ=-64.5 GT:PL:GQ 1/1:78,30,0:56 chr3 48451300 . AGG AG 214 . INDEL;DP=21;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,17,4;MQ=60;FQ=-97.5 GT:PL:GQ 1/1:255,63,0:99 chr3 48454468 . C T 215 . DP=99;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,41,49;MQ=60;FQ=-282 GT:PL:GQ 1/1:248,255,0:99 chr3 48455626 . A G 33 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:65,9,0:16 chr3 48461313 . C G 163 . DP=17;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,10,7;MQ=60;FQ=-78 GT:PL:GQ 1/1:196,51,0:99 chr3 48462461 . A G 14.1 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:46,9,0:14 chr3 48463618 . T A 222 . DP=68;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,35;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr3 48463711 . T C 222 . DP=54;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,22,29;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr3 48474249 . A G 193 . DP=63;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,14,45;MQ=60;FQ=-205 GT:PL:GQ 1/1:226,178,0:99 chr3 48476431 . C G 222 . DP=83;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,38,37;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr3 48481647 . G A 132 . DP=16;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,13,3;MQ=60;FQ=-75 GT:PL:GQ 1/1:165,48,0:93 chr3 48491367 . T G 26 . DP=14;VDB=0.0099;AF1=0.5;AC1=1;DP4=3,3,6,0;MQ=58;FQ=29;PV4=0.18,2.8e-05,0.17,1 GT:PL:GQ 0/1:56,0,146:59 chr3 48505302 . A G 222 . DP=17;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,2,15;MQ=60;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr3 48505964 . C A 222 . DP=47;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,25,19;MQ=60;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr3 48508585 . C T 222 . DP=96;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,53,40;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 48576483 . C G 18 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:50,9,0:15 chr3 48602523 . GG GGGCG 214 . INDEL;DP=32;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,14,16;MQ=60;FQ=-125 GT:PL:GQ 1/1:255,90,0:99 chr3 48604016 . C G 134 . DP=34;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,9,7,9;MQ=59;FQ=137;PV4=0.74,6.5e-09,0.15,1 GT:PL:GQ 0/1:164,0,255:99 chr3 48604059 . G A 138 . DP=32;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,11,6,11;MQ=60;FQ=141;PV4=0.71,4.1e-15,1,0.2 GT:PL:GQ 0/1:168,0,250:99 chr3 48625266 . T C 222 . DP=63;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,31,31;MQ=59;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr3 48631038 . CTGTG CTG 217 . INDEL;DP=110;VDB=0.0365;AF1=0.5;AC1=1;DP4=27,35,15,27;MQ=60;FQ=217;PV4=0.54,4.1e-06,0.055,0.17 GT:PL:GQ 0/1:255,0,255:99 chr3 48658467 . C A 49 . DP=12;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,4,1,7;MQ=60;FQ=51.4;PV4=1,6.9e-06,1,0.052 GT:PL:GQ 0/1:79,0,87:81 chr3 48659009 . G T 75 . DP=29;VDB=0.0305;AF1=0.5;AC1=1;DP4=6,11,5,4;MQ=60;FQ=78;PV4=0.42,1.3e-06,1,0.46 GT:PL:GQ 0/1:105,0,255:99 chr3 48666923 . A G 74 . DP=10;VDB=0.0008;AF1=0.5;AC1=1;DP4=4,0,6,0;MQ=60;FQ=67.5;PV4=1,0.061,1,0.21 GT:PL:GQ 0/1:104,0,95:97 chr3 48668394 . G T 145 . DP=39;VDB=0.0190;AF1=0.5;AC1=1;DP4=15,5,11,6;MQ=60;FQ=148;PV4=0.72,1e-12,1,1 GT:PL:GQ 0/1:175,0,255:99 chr3 48669447 . C T 225 . DP=38;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,10,7,12;MQ=59;FQ=225;PV4=0.74,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 48670827 . G T 145 . DP=70;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,17,18,19;MQ=59;FQ=148;PV4=0.81,2.6e-23,1,1 GT:PL:GQ 0/1:175,0,255:99 chr3 48678971 . T G 32 . DP=12;VDB=0.0359;AF1=0.5;AC1=1;DP4=1,5,4,1;MQ=58;FQ=35;PV4=0.08,4.5e-07,1,1 GT:PL:GQ 0/1:62,0,142:65 chr3 48681053 . C T 61 . DP=25;VDB=0.0244;AF1=0.5;AC1=1;DP4=10,2,9,2;MQ=60;FQ=64;PV4=1,4.3e-09,1,1 GT:PL:GQ 0/1:91,0,198:94 chr3 48682658 . C T 205 . DP=82;VDB=0.0392;AF1=0.5;AC1=1;DP4=30,19,10,17;MQ=60;FQ=208;PV4=0.056,0.13,1,1 GT:PL:GQ 0/1:235,0,255:99 chr3 48689192 . G A 4.13 . DP=7;VDB=0.0219;AF1=0.4998;AC1=1;DP4=2,2,0,3;MQ=60;FQ=6.2;PV4=0.43,0.056,1,0.43 GT:PL:GQ 0/1:32,0,101:31 chr3 48689787 . A G 79 . DP=14;VDB=0.0118;AF1=0.5;AC1=1;DP4=6,1,6,1;MQ=58;FQ=82;PV4=1,0.014,1,0.021 GT:PL:GQ 0/1:109,0,154:99 chr3 48690110 . T C 146 . DP=13;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,4,2,6;MQ=60;FQ=91;PV4=1,0.27,1,1 GT:PL:GQ 0/1:176,0,118:99 chr3 48691316 . T C 184 . DP=68;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,20,12,24;MQ=59;FQ=187;PV4=1,8.9e-13,1,1 GT:PL:GQ 0/1:214,0,255:99 chr3 48694147 . G A 123 . DP=30;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,3,11,3;MQ=59;FQ=126;PV4=1,1.5e-06,1,1 GT:PL:GQ 0/1:153,0,214:99 chr3 48697654 . C G 181 . DP=105;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,30,22,27;MQ=59;FQ=184;PV4=1,1.3e-31,1,1 GT:PL:GQ 0/1:211,0,255:99 chr3 48698936 . T C 193 . DP=26;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,6,5,6;MQ=59;FQ=196;PV4=0.7,1,0.13,0.2 GT:PL:GQ 0/1:223,0,255:99 chr3 48699519 . C T 153 . DP=55;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,12,12,16;MQ=60;FQ=156;PV4=1,2.4e-11,1,0.41 GT:PL:GQ 0/1:183,0,255:99 chr3 48719453 . A C 175 . DP=93;VDB=0.0271;AF1=0.5;AC1=1;DP4=26,18,27,20;MQ=59;FQ=178;PV4=1,6.1e-20,0.085,1 GT:PL:GQ 0/1:205,0,255:99 chr3 48719637 . G A 225 . DP=37;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,11,6,15;MQ=60;FQ=219;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,247:99 chr3 48719638 . T C 132 . DP=37;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,15,5,11;MQ=60;FQ=135;PV4=0.72,2.4e-08,1,0.13 GT:PL:GQ 0/1:162,0,255:99 chr3 48723302 . G C 21 . DP=10;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,3,0,6;MQ=60;FQ=24;PV4=0.4,1.4e-05,1,1 GT:PL:GQ 0/1:51,0,102:54 chr3 48725707 . C T 95 . DP=47;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,8,17,3;MQ=60;FQ=98;PV4=0.3,5.6e-20,1,0.31 GT:PL:GQ 0/1:125,0,255:99 chr3 48727112 . G A 225 . DP=65;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,17,10,23;MQ=60;FQ=225;PV4=0.43,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 48732223 . G A 111 . DP=33;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,2,13,2;MQ=60;FQ=114;PV4=1,1.5e-05,1,1 GT:PL:GQ 0/1:141,0,216:99 chr3 48732480 . T C 184 . DP=96;VDB=0.0400;AF1=0.5;AC1=1;DP4=27,19,26,21;MQ=60;FQ=187;PV4=0.83,4.9e-22,0.16,1 GT:PL:GQ 0/1:214,0,255:99 chr3 48752654 . C T 77 . DP=26;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,1,14,2;MQ=60;FQ=80;PV4=1,2.5e-13,1,0.38 GT:PL:GQ 0/1:107,0,159:99 chr3 48845251 . C T 130 . DP=71;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,30,6,27;MQ=60;FQ=133;PV4=0.26,7.5e-29,0.16,0.48 GT:PL:GQ 0/1:160,0,235:99 chr3 48897078 . A G 107 . DP=21;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,3,17;MQ=60;FQ=-87 GT:PL:GQ 1/1:140,60,0:99 chr3 48986399 . A T 110 . DP=143;VDB=0.0345;AF1=0.5;AC1=1;DP4=38,43,30,29;MQ=59;FQ=113;PV4=0.73,8.6e-57,0.0017,1 GT:PL:GQ 0/1:140,0,255:99 chr3 49004723 . A G 78 . DP=45;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,18,3,20;MQ=60;FQ=81;PV4=1,2.3e-19,1,1 GT:PL:GQ 0/1:108,0,253:99 chr3 49044767 . C T 53 . DP=8;VDB=0.0042;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=25;PV4=1,0.025,1,1 GT:PL:GQ 0/1:83,0,52:55 chr3 49053219 . A G 222 . DP=89;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,40,46;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 49054692 . T C 213 . DP=50;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,34,10;MQ=59;FQ=-159 GT:PL:GQ 1/1:246,132,0:99 chr3 49055788 . G T 66 . DP=26;VDB=0.0164;AF1=0.5;AC1=1;DP4=10,6,4,6;MQ=59;FQ=69;PV4=0.42,3.8e-09,1,0.41 GT:PL:GQ 0/1:96,0,252:99 chr3 49064110 . A G 175 . DP=157;VDB=0.0399;AF1=0.5;AC1=1;DP4=39,45,36,32;MQ=60;FQ=178;PV4=0.51,4e-34,1,1 GT:PL:GQ 0/1:205,0,255:99 chr3 49064576 . C T 45 . DP=8;VDB=0.0149;AF1=0.5;AC1=1;DP4=2,3,0,3;MQ=60;FQ=48;PV4=0.46,1,1,0.3 GT:PL:GQ 0/1:75,0,138:78 chr3 49067904 . T C 86 . DP=13;VDB=0.0099;AF1=0.5;AC1=1;DP4=3,1,6,3;MQ=60;FQ=67;PV4=1,3.8e-05,1,0.21 GT:PL:GQ 0/1:116,0,94:97 chr3 49070499 . C T 154 . DP=18;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,5;MQ=57;FQ=-81 GT:PL:GQ 1/1:187,54,0:99 chr3 49133310 . A G 84 . DP=20;VDB=0.0140;AF1=0.5;AC1=1;DP4=11,2,5,2;MQ=59;FQ=87;PV4=0.59,0.0009,0.09,0.067 GT:PL:GQ 0/1:114,0,226:99 chr3 49135961 . C G 141 . DP=96;VDB=0.0400;AF1=0.5;AC1=1;DP4=28,30,18,18;MQ=60;FQ=144;PV4=1,6.2e-22,1,1 GT:PL:GQ 0/1:171,0,255:99 chr3 49137043 . C T 225 . DP=64;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,17,17,15;MQ=59;FQ=225;PV4=0.46,0.39,0.085,0.4 GT:PL:GQ 0/1:255,0,255:99 chr3 49137904 . G T 161 . DP=119;VDB=0.0380;AF1=0.5;AC1=1;DP4=40,27,31,19;MQ=59;FQ=164;PV4=0.85,2.9e-25,0.2,0.41 GT:PL:GQ 0/1:191,0,255:99 chr3 49139406 . G A 98 . DP=21;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,7,2,10;MQ=60;FQ=101;PV4=1,1.6e-09,1,0.12 GT:PL:GQ 0/1:128,0,162:99 chr3 49139966 . G A 135 . DP=43;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,19,8,10;MQ=60;FQ=138;PV4=0.2,7.7e-12,1,1 GT:PL:GQ 0/1:165,0,255:99 chr3 49141116 . G A 161 . DP=65;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,19,15,14;MQ=60;FQ=164;PV4=0.44,1.4e-17,1,1 GT:PL:GQ 0/1:191,0,255:99 chr3 49145741 . T C 70 . DP=23;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,3,5,4;MQ=60;FQ=73;PV4=0.4,5e-07,1,0.2 GT:PL:GQ 0/1:100,0,221:99 chr3 49148890 . T C 176 . DP=160;VDB=0.0365;AF1=1;AC1=2;DP4=0,1,72,77;MQ=59;FQ=-282;PV4=1,2.6e-09,1,0.26 GT:PL:GQ 1/1:209,255,0:99 chr3 49156473 . C G 172 . DP=113;VDB=0.0345;AF1=0.5;AC1=1;DP4=36,25,28,21;MQ=59;FQ=175;PV4=0.85,8.6e-20,1,0.41 GT:PL:GQ 0/1:202,0,255:99 chr3 49161660 . T C 129 . DP=89;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,34,14,27;MQ=59;FQ=132;PV4=0.35,8.1e-30,0.47,1 GT:PL:GQ 0/1:159,0,255:99 chr3 49162284 . C T 186 . DP=104;VDB=0.0398;AF1=0.5;AC1=1;DP4=17,21,33,26;MQ=59;FQ=189;PV4=0.31,1.1e-26,1,0.44 GT:PL:GQ 0/1:216,0,255:99 chr3 49166069 . C T 195 . DP=70;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,38,30;MQ=59;FQ=-232 GT:PL:GQ 1/1:228,205,0:99 chr3 49168758 . A G 28 . DP=16;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,1,2,3;MQ=60;FQ=31;PV4=0.22,0.0001,1,0.49 GT:PL:GQ 0/1:58,0,156:61 chr3 49200627 . A G 225 . DP=168;VDB=0.0399;AF1=0.5;AC1=1;DP4=50,40,45,25;MQ=59;FQ=225;PV4=0.33,0.081,0.4,1 GT:PL:GQ 0/1:255,0,255:99 chr3 49200692 . T A 225 . DP=190;VDB=0.0365;AF1=0.5;AC1=1;DP4=42,40,51,51;MQ=59;FQ=225;PV4=0.88,0.005,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 49215966 . C T 147 . DP=34;VDB=0.0373;AF1=0.5;AC1=1;DP4=9,6,12,6;MQ=60;FQ=150;PV4=0.73,6.8e-10,1,0.48 GT:PL:GQ 0/1:177,0,255:99 chr3 49269758 . G T 107 . DP=24;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,23;MQ=59;FQ=-99 GT:PL:GQ 1/1:140,72,0:99 chr3 49273996 . C T 108 . DP=43;VDB=0.0216;AF1=0.5;AC1=1;DP4=17,1,20,3;MQ=59;FQ=111;PV4=0.62,2.8e-23,1,0.088 GT:PL:GQ 0/1:138,0,197:99 chr3 49281902 . T C 4.13 . DP=6;VDB=0.0214;AF1=0.4998;AC1=1;DP4=0,3,2,1;MQ=60;FQ=6.2;PV4=0.4,0.021,1,0.28 GT:PL:GQ 0/1:32,0,70:31 chr3 49294250 . C A 69 . DP=82;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,32,10,16;MQ=59;FQ=72;PV4=0.8,3.7e-31,1,1 GT:PL:GQ 0/1:99,0,255:99 chr3 49298139 . G A 222 . DP=43;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,31,10;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr3 49298205 . T C 222 . DP=64;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,38,22;MQ=59;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr3 49313978 . C T 162 . DP=81;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,21,21,20;MQ=60;FQ=165;PV4=0.66,2.1e-25,0.17,0.41 GT:PL:GQ 0/1:192,0,255:99 chr3 49322027 . T A 114 . DP=47;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,15,10,10;MQ=60;FQ=117;PV4=0.77,5.9e-17,1,1 GT:PL:GQ 0/1:144,0,255:99 chr3 49339833 . T C 52 . DP=33;VDB=0.0271;AF1=0.5;AC1=1;DP4=16,6,9,2;MQ=60;FQ=55;PV4=0.69,6e-11,1,1 GT:PL:GQ 0/1:82,0,255:85 chr3 49343175 . G A 209 . DP=41;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,4,21,2;MQ=59;FQ=207;PV4=0.38,1,1,0.42 GT:PL:GQ 0/1:239,0,236:99 chr3 49362369 . C T 149 . DP=97;VDB=0.0393;AF1=0.5;AC1=1;DP4=14,34,13,33;MQ=60;FQ=152;PV4=1,4e-25,1,0.02 GT:PL:GQ 0/1:179,0,255:99 chr3 49365269 . C T 135 . DP=25;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,14,1,10;MQ=59;FQ=138;PV4=0.44,0.069,0.13,0.38 GT:PL:GQ 0/1:165,0,176:99 chr3 49373045 . A G 87 . DP=53;VDB=0.0066;AF1=0.5;AC1=1;DP4=4,24,3,22;MQ=59;FQ=90;PV4=1,2.2e-18,0.47,1 GT:PL:GQ 0/1:117,0,255:99 chr3 49394834 . G A 140 . DP=15;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,10,4;MQ=36;FQ=-69 GT:PL:GQ 1/1:173,42,0:81 chr3 49395673 . Ggccgccgccgccgccgccgc Ggccgccgccgccgccgc 81.2 . INDEL;DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:120,6,0:10 chr3 49395757 . G A 44.8 . DP=2;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:76,6,0:10 chr3 49398514 . C A 19 . DP=3;VDB=0.0214;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:51,9,0:15 chr3 49406095 . G A 106 . DP=40;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,15,2,23;MQ=60;FQ=109;PV4=0.52,1.2e-16,0.22,1 GT:PL:GQ 0/1:136,0,163:99 chr3 49450449 . C T 78 . DP=20;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,18,2;MQ=60;FQ=-87 GT:PL:GQ 1/1:111,60,0:99 chr3 49455330 . C T 162 . DP=40;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,28;MQ=60;FQ=-138 GT:PL:GQ 1/1:195,111,0:99 chr3 49463926 . A G 222 . DP=73;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,15,55;MQ=57;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr3 49548008 . C G 99 . DP=32;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,28,2;MQ=60;FQ=-117 GT:PL:GQ 1/1:132,90,0:99 chr3 49548294 . T C 145 . DP=47;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,10,35;MQ=59;FQ=-162 GT:PL:GQ 1/1:178,135,0:99 chr3 49570200 . C T 222 . DP=67;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,35,28;MQ=59;FQ=-186;PV4=1,1,0.41,0.23 GT:PL:GQ 1/1:255,159,0:99 chr3 49689210 . G A 142 . DP=16;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,7,5;MQ=60;FQ=-63 GT:PL:GQ 1/1:175,36,0:69 chr3 49690199 . G A 180 . DP=49;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,41,5;MQ=59;FQ=-165 GT:PL:GQ 1/1:213,138,0:99 chr3 49690496 . C T 222 . DP=92;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,28,60;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 49693097 . C T 159 . DP=186;VDB=0.0392;AF1=0.5;AC1=1;DP4=54,41,40,48;MQ=60;FQ=162;PV4=0.14,8.4e-49,0.48,1 GT:PL:GQ 0/1:189,0,255:99 chr3 49701983 . G A 175 . DP=18;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,13;MQ=59;FQ=-81 GT:PL:GQ 1/1:208,54,0:99 chr3 49713753 . T C 79 . DP=30;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,27,1;MQ=60;FQ=-111 GT:PL:GQ 1/1:112,84,0:99 chr3 49714225 . T C 222 . DP=111;VDB=0.0399;AF1=1;AC1=2;DP4=0,1,68,41;MQ=60;FQ=-282;PV4=0.38,0.17,0.46,1 GT:PL:GQ 1/1:255,255,0:99 chr3 49719729 . G A 76 . DP=11;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,5,3;MQ=57;FQ=-51 GT:PL:GQ 1/1:109,24,0:45 chr3 49721532 . G A 196 . DP=34;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,16,18;MQ=53;FQ=-129 GT:PL:GQ 1/1:229,102,0:99 chr3 49721798 . C A 194 . DP=27;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,14,9;MQ=55;FQ=-96 GT:PL:GQ 1/1:227,69,0:99 chr3 49722356 . G A 168 . DP=46;VDB=0.0400;AF1=0.5032;AC1=1;DP4=5,5,17,18;MQ=47;FQ=-8.63;PV4=1,3.4e-14,1,0.34 GT:PL:GQ 0/1:198,0,19:22 chr3 49724808 . T C 190 . DP=87;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,50,33;MQ=56;FQ=-245;PV4=1,8e-05,0.28,1 GT:PL:GQ 1/1:223,218,0:99 chr3 49726174 . A G 7.8 . DP=7;VDB=0.0189;AF1=0.5;AC1=1;DP4=0,4,1,2;MQ=40;FQ=10.4;PV4=0.43,0.34,0.073,0.43 GT:PL:GQ 0/1:37,0,80:39 chr3 49726178 . G A 22 . DP=7;VDB=0.0224;AF1=0.5;AC1=1;DP4=1,3,0,3;MQ=40;FQ=24.5;PV4=1,1,1,1 GT:PL:GQ 0/1:52,0,61:54 chr3 49736565 . G A 173 . DP=22;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,6,14;MQ=60;FQ=-87 GT:PL:GQ 1/1:206,60,0:99 chr3 49739086 . C T 123 . DP=14;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,8,6;MQ=60;FQ=-69 GT:PL:GQ 1/1:156,42,0:81 chr3 49739507 . G C 222 . DP=31;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,19,12;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr3 49744392 . A G 80 . DP=16;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,16;MQ=60;FQ=-75 GT:PL:GQ 1/1:113,48,0:93 chr3 49749976 . G A 225 . DP=100;VDB=0.0298;AF1=0.5;AC1=1;DP4=32,23,26,16;MQ=60;FQ=225;PV4=0.83,1,0.052,1 GT:PL:GQ 0/1:255,0,255:99 chr3 49750188 . T A 174 . DP=20;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,4,16;MQ=60;FQ=-87 GT:PL:GQ 1/1:207,60,0:99 chr3 49753003 . T G 147 . DP=35;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,30,2;MQ=60;FQ=-123 GT:PL:GQ 1/1:180,96,0:99 chr3 49753788 . A G 222 . DP=41;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,28,10;MQ=59;FQ=-115;PV4=0.28,1,1,1 GT:PL:GQ 1/1:255,88,0:99 chr3 49760039 . T C 222 . DP=88;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,54,25;MQ=60;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr3 49832788 . G A 110 . DP=23;VDB=0.0359;AF1=0.5;AC1=1;DP4=3,6,0,13;MQ=59;FQ=113;PV4=0.055,0.04,1,0.17 GT:PL:GQ 0/1:140,0,174:99 chr3 49928614 . T A 156 . DP=48;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,5,23,6;MQ=59;FQ=159;PV4=0.72,4.7e-10,1,1 GT:PL:GQ 0/1:186,0,230:99 chr3 49928691 . T C 222 . DP=64;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,29,32;MQ=60;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr3 50103917 . G A 127 . DP=50;VDB=0.0216;AF1=0.5;AC1=1;DP4=5,18,4,22;MQ=60;FQ=130;PV4=0.72,1.6e-18,1,0.49 GT:PL:GQ 0/1:157,0,255:99 chr3 50114515 . C T 131 . DP=12;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,9,2;MQ=58;FQ=-60 GT:PL:GQ 1/1:164,33,0:63 chr3 50129374 . T TA 127 . INDEL;DP=7;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-55.5 GT:PL:GQ 1/1:167,21,0:39 chr3 50129399 . C T 129 . DP=17;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,13,2;MQ=60;FQ=-72 GT:PL:GQ 1/1:162,45,0:87 chr3 50144951 . T C 144 . DP=50;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,39;MQ=60;FQ=-175 GT:PL:GQ 1/1:177,148,0:99 chr3 50153356 . T C 222 . DP=88;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,49,37;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 50197097 . C T 222 . DP=113;VDB=0.0298;AF1=1;AC1=2;DP4=1,0,79,30;MQ=60;FQ=-282;PV4=1,3.3e-06,1,0.26 GT:PL:GQ 1/1:255,255,0:99 chr3 50212380 . TA T 28.5 . INDEL;DP=10;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,1,3,0;MQ=60;FQ=31.5;PV4=1,0.05,1,0.067 GT:PL:GQ 0/1:66,0,135:69 chr3 50222926 . T A 222 . DP=31;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,21,10;MQ=59;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr3 50223593 . T A 222 . DP=35;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,21;MQ=59;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr3 50223977 . C T 98 . DP=17;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,15,2;MQ=60;FQ=-78 GT:PL:GQ 1/1:131,51,0:99 chr3 50224225 . A G 222 . DP=29;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,17;MQ=59;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr3 50225029 . A G 222 . DP=29;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,20,5;MQ=59;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr3 50251833 . AGG AGGG 214 . INDEL;DP=45;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,31,12;MQ=60;FQ=-164 GT:PL:GQ 1/1:255,129,0:99 chr3 50290016 . G A 3.98 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr3 50306752 . GCCCCC GCCCCCC 86.5 . INDEL;DP=11;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,2,8;MQ=60;FQ=-64.5 GT:PL:GQ 1/1:127,30,0:57 chr3 50308718 . A G 222 . DP=26;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,22,2;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr3 50311319 . A C 9.52 . DP=14;VDB=0.0006;AF1=0.5;AC1=1;DP4=8,1,0,5;MQ=57;FQ=12.3;PV4=0.003,8.5e-05,0.021,0.19 GT:PL:GQ 0/1:39,0,150:41 chr3 50329826 . A G 222 . DP=24;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,20,3;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr3 50332697 . G A 159 . DP=54;VDB=0.0398;AF1=0.5;AC1=1;DP4=17,11,15,8;MQ=60;FQ=162;PV4=0.78,1.6e-09,0.14,1 GT:PL:GQ 0/1:189,0,255:99 chr3 50339622 . C T 92 . DP=44;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,11,14,7;MQ=59;FQ=95;PV4=0.36,2.8e-17,1,0.44 GT:PL:GQ 0/1:122,0,255:99 chr3 50357869 . A C 33 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,10,0,7;MQ=60;FQ=36;PV4=0.13,0.00018,1,1 GT:PL:GQ 0/1:63,0,243:66 chr3 50413679 . C T 6.98 . DP=5;VDB=0.0184;AF1=0.4999;AC1=1;DP4=0,3,0,2;MQ=60;FQ=9.53;PV4=1,0.0086,1,0.24 GT:PL:GQ 0/1:36,0,87:37 chr3 50597092 . G A 222 . DP=104;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,35,62;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 50609123 . T C 222 . DP=56;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,40,8;MQ=60;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr3 50609624 . T G 222 . DP=59;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,27,29;MQ=59;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr3 50645635 . T G 189 . DP=62;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,12,48;MQ=59;FQ=-208 GT:PL:GQ 1/1:222,181,0:99 chr3 50645793 . C G 157 . DP=75;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,42,20;MQ=60;FQ=-214 GT:PL:GQ 1/1:190,187,0:99 chr3 50678001 . C T 106 . DP=6;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:139,15,0:27 chr3 50683809 . T C 108 . DP=23;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,12;MQ=60;FQ=-75 GT:PL:GQ 1/1:141,48,0:93 chr3 50684489 . A G 160 . DP=28;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,12;MQ=60;FQ=-108 GT:PL:GQ 1/1:193,81,0:99 chr3 50685574 . CAAAA CAAA 22.5 . INDEL;DP=8;VDB=0.0019;AF1=0.5003;AC1=1;DP4=0,2,0,4;MQ=60;FQ=-6.6;PV4=1,0.0022,1,0.31 GT:PL:GQ 0/1:60,0,29:32 chr3 51246360 . A G 183 . DP=48;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,6,41;MQ=60;FQ=-168 GT:PL:GQ 1/1:216,141,0:99 chr3 51273711 . A G 161 . DP=45;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,40,4;MQ=60;FQ=-159 GT:PL:GQ 1/1:194,132,0:99 chr3 51273773 . T C 167 . DP=65;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,34,27;MQ=60;FQ=-211 GT:PL:GQ 1/1:200,184,0:99 chr3 51274902 . TA TAA 217 . INDEL;DP=55;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,9,24,9;MQ=60;FQ=214;PV4=0.25,1,1,1 GT:PL:GQ 0/1:255,0,249:99 chr3 51393706 . C CAG 214 . INDEL;DP=31;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,15,15;MQ=60;FQ=-125 GT:PL:GQ 1/1:255,90,0:99 chr3 51418348 . G A 172 . DP=18;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,18,0;MQ=59;FQ=-81 GT:PL:GQ 1/1:205,54,0:99 chr3 51422766 . G T 48.3 . DP=5;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:81,15,0:27 chr3 51469107 . C T 184 . DP=10;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,3,6;MQ=55;FQ=-54 GT:PL:GQ 1/1:217,27,0:51 chr3 51697493 . A G 136 . DP=39;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,10,27;MQ=59;FQ=-138 GT:PL:GQ 1/1:169,111,0:99 chr3 51738101 . G A 78 . DP=14;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,4,2,5;MQ=58;FQ=81;PV4=1,2.5e-05,0.19,1 GT:PL:GQ 0/1:108,0,137:99 chr3 51863322 . G A 23 . DP=12;VDB=0.0014;AF1=0.5;AC1=1;DP4=5,1,5,1;MQ=60;FQ=26;PV4=1,2.2e-07,1,1 GT:PL:GQ 0/1:53,0,143:56 chr3 51895850 . C T 177 . DP=41;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,28,11;MQ=60;FQ=-144 GT:PL:GQ 1/1:210,117,0:99 chr3 51907736 . A G 213 . DP=48;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,8,12,5;MQ=59;FQ=216;PV4=1,0.47,0.34,1 GT:PL:GQ 0/1:243,0,255:99 chr3 51908226 . T C 191 . DP=19;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,8,9;MQ=60;FQ=-78 GT:PL:GQ 1/1:224,51,0:99 chr3 51908430 . T C 153 . DP=79;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,32,45;MQ=60;FQ=-259 GT:PL:GQ 1/1:186,232,0:99 chr3 51929360 . GAAAAAAA GAAAAAA 31.5 . INDEL;DP=12;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-58.5 GT:PL:GQ 1/1:72,24,0:44 chr3 51936949 . T C 222 . DP=153;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,108,44;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 51970296 . T G 126 . DP=89;VDB=0.0393;AF1=0.5;AC1=1;DP4=31,16,21,13;MQ=59;FQ=129;PV4=0.82,3.1e-32,1,0.2 GT:PL:GQ 0/1:156,0,255:99 chr3 51978220 . A G 222 . DP=79;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,33,43;MQ=59;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr3 51990315 . A G 194 . DP=9;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,3,6;MQ=60;FQ=-54 GT:PL:GQ 1/1:227,27,0:51 chr3 52232979 . ATT ATTTACTT 217 . INDEL;DP=82;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,37,9,23;MQ=58;FQ=217;PV4=0.4,1,0.0025,0.29 GT:PL:GQ 0/1:255,0,255:99 chr3 52236762 . G A 108 . DP=43;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,17,3,18;MQ=59;FQ=111;PV4=0.7,2.5e-20,1,1 GT:PL:GQ 0/1:138,0,255:99 chr3 52237970 . C T 127 . DP=86;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,36,8,27;MQ=60;FQ=130;PV4=0.63,2.2e-32,0.12,1 GT:PL:GQ 0/1:157,0,255:99 chr3 52238677 . C T 57 . DP=13;VDB=0.0004;AF1=0.5;AC1=1;DP4=5,0,6,1;MQ=60;FQ=60;PV4=1,1.2e-06,1,0.18 GT:PL:GQ 0/1:87,0,111:90 chr3 52255392 . G A 182 . DP=43;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,9,10,4;MQ=60;FQ=185;PV4=1,1,1,1 GT:PL:GQ 0/1:212,0,255:99 chr3 52256697 . C T 222 . DP=42;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,17,23;MQ=60;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr3 52264907 . T C 29 . DP=72;VDB=0.0399;AF1=0.5;AC1=1;DP4=41,9,13,5;MQ=59;FQ=32;PV4=0.5,1.4e-20,1,1 GT:PL:GQ 0/1:59,0,255:62 chr3 52265215 . G A 175 . DP=45;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,12,11,14;MQ=59;FQ=178;PV4=0.76,1.8e-06,1,1 GT:PL:GQ 0/1:205,0,255:99 chr3 52265259 . G C 104 . DP=39;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,9,7,11;MQ=60;FQ=107;PV4=0.74,3.8e-11,1,1 GT:PL:GQ 0/1:134,0,255:99 chr3 52279951 . T G 34 . DP=4;VDB=0.0206;AF1=0.5016;AC1=1;DP4=1,0,2,1;MQ=60;FQ=-6.18;PV4=1,0.013,1,0.33 GT:PL:GQ 0/1:64,0,22:25 chr3 52293312 . C G 225 . DP=131;VDB=0.0365;AF1=0.5;AC1=1;DP4=45,29,24,30;MQ=60;FQ=225;PV4=0.075,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 52293859 . A G 225 . DP=30;VDB=0.0164;AF1=0.5;AC1=1;DP4=3,12,7,8;MQ=60;FQ=219;PV4=0.25,1,1,1 GT:PL:GQ 0/1:255,0,246:99 chr3 52325039 . G A 179 . DP=67;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,21,11,21;MQ=60;FQ=182;PV4=1,3.9e-13,1,0.42 GT:PL:GQ 0/1:209,0,255:99 chr3 52325759 . A G 196 . DP=57;VDB=0.0345;AF1=1;AC1=2;DP4=0,1,33,22;MQ=59;FQ=-166;PV4=0.41,0.018,1,0.3 GT:PL:GQ 1/1:229,139,0:99 chr3 52361046 . A G 6.98 . DP=10;VDB=0.0095;AF1=0.4999;AC1=1;DP4=0,6,0,4;MQ=60;FQ=9.53;PV4=1,2.1e-06,1,0.37 GT:PL:GQ 0/1:36,0,133:37 chr3 52366044 . G A 59 . DP=28;VDB=0.0033;AF1=0.5;AC1=1;DP4=6,1,18,1;MQ=60;FQ=62;PV4=0.47,3.5e-15,1,1 GT:PL:GQ 0/1:89,0,132:92 chr3 52382822 . C T 51 . DP=16;VDB=0.0099;AF1=0.5;AC1=1;DP4=7,1,6,1;MQ=60;FQ=54;PV4=1,0.0025,1,0.24 GT:PL:GQ 0/1:81,0,159:84 chr3 52383120 . G A 225 . DP=115;VDB=0.0298;AF1=0.5;AC1=1;DP4=19,43,18,33;MQ=60;FQ=225;PV4=0.69,0.023,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 52384594 . A G 107 . DP=54;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,23,3,19;MQ=60;FQ=110;PV4=0.49,6.2e-12,1,1 GT:PL:GQ 0/1:137,0,255:99 chr3 52387078 . T C 105 . DP=16;VDB=0.0081;AF1=0.5;AC1=1;DP4=9,1,5,1;MQ=60;FQ=108;PV4=1,1,1,1 GT:PL:GQ 0/1:135,0,153:99 chr3 52391473 . G A 4.13 . DP=3;VDB=0.0186;AF1=0.5001;AC1=1;DP4=1,0,2,0;MQ=60;FQ=3.48;PV4=1,0.032,1,1 GT:PL:GQ 0/1:32,0,30:30 chr3 52391735 . A C 225 . DP=58;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,19,5,25;MQ=60;FQ=225;PV4=0.22,0.44,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 52396944 . G A 92 . DP=21;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,1,14,1;MQ=60;FQ=92.9;PV4=0.5,1.6e-09,1,1 GT:PL:GQ 0/1:122,0,124:99 chr3 52400740 . G C 93 . DP=46;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,2,17,4;MQ=58;FQ=96;PV4=0.4,6.4e-16,1,1 GT:PL:GQ 0/1:123,0,227:99 chr3 52404111 . G A 225 . DP=125;VDB=0.0399;AF1=0.5;AC1=1;DP4=39,19,37,26;MQ=60;FQ=225;PV4=0.35,0.25,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 52407041 . C T 174 . DP=38;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,19,2,15;MQ=60;FQ=177;PV4=1,0.0018,1,1 GT:PL:GQ 0/1:204,0,240:99 chr3 52409421 . A G 178 . DP=60;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,17,13,20;MQ=60;FQ=181;PV4=0.79,1.6e-08,0.19,1 GT:PL:GQ 0/1:208,0,255:99 chr3 52415865 . A G 51.1 . DP=8;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:84,21,0:39 chr3 52420901 . G A 34 . DP=13;VDB=0.0008;AF1=0.5;AC1=1;DP4=3,5,1,4;MQ=60;FQ=37;PV4=1,1.1e-05,1,1 GT:PL:GQ 0/1:64,0,172:67 chr3 52426829 . A C 4.13 . DP=26;VDB=0.0033;AF1=0.4998;AC1=1;DP4=4,8,6,0;MQ=53;FQ=6.2;PV4=0.013,1.2e-05,0.36,1 GT:PL:GQ 0/1:32,0,192:31 chr3 52428988 . C A 194 . DP=97;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,17,31,27;MQ=60;FQ=197;PV4=1,1e-11,1,0.2 GT:PL:GQ 0/1:224,0,255:99 chr3 52430698 . A G 222 . DP=51;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,21,28;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr3 52431671 . G A 41 . DP=45;VDB=0.0244;AF1=0.5;AC1=1;DP4=18,3,21,2;MQ=60;FQ=44;PV4=0.66,2.9e-28,1,0.42 GT:PL:GQ 0/1:71,0,255:74 chr3 52432214 . G A 112 . DP=53;VDB=0.0099;AF1=0.5;AC1=1;DP4=8,23,4,18;MQ=60;FQ=115;PV4=0.74,1.9e-19,1,1 GT:PL:GQ 0/1:142,0,255:99 chr3 52453893 . C T 86 . DP=11;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,10,0;MQ=60;FQ=-57 GT:PL:GQ 1/1:119,30,0:57 chr3 52454262 . T G 131 . DP=50;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,12,15,7;MQ=60;FQ=134;PV4=0.4,9.3e-19,0.14,1 GT:PL:GQ 0/1:161,0,255:99 chr3 52456973 . A G 3.98 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:33,6,0:5 chr3 52471942 . G A 58 . DP=20;VDB=0.0053;AF1=0.5;AC1=1;DP4=10,0,8,2;MQ=60;FQ=61;PV4=0.47,2.9e-12,1,0.44 GT:PL:GQ 0/1:88,0,148:91 chr3 52477080 . T C 225 . DP=44;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,13,9,15;MQ=59;FQ=225;PV4=0.76,0.44,0.19,1 GT:PL:GQ 0/1:255,0,255:99 chr3 52489627 . G T 73 . DP=13;VDB=0.0066;AF1=0.5;AC1=1;DP4=7,1,5,0;MQ=60;FQ=76;PV4=1,1,1,1 GT:PL:GQ 0/1:103,0,162:99 chr3 52492085 . G A 160 . DP=11;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,10;MQ=58;FQ=-60 GT:PL:GQ 1/1:193,33,0:63 chr3 52492707 . T C 178 . DP=15;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,7,7;MQ=60;FQ=-69 GT:PL:GQ 1/1:211,42,0:81 chr3 52505758 . G GAT 214 . INDEL;DP=22;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,15,7;MQ=59;FQ=-101 GT:PL:GQ 1/1:255,66,0:99 chr3 52506282 . A G 165 . DP=12;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,7,5;MQ=60;FQ=-63 GT:PL:GQ 1/1:198,36,0:69 chr3 52506426 . C T 222 . DP=24;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,9,15;MQ=59;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr3 52506491 . A G 145 . DP=15;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,3,11;MQ=58;FQ=-69 GT:PL:GQ 1/1:178,42,0:81 chr3 52507719 . G C 225 . DP=41;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,10,9,11;MQ=60;FQ=225;PV4=0.76,0.046,1,0.45 GT:PL:GQ 0/1:255,0,255:99 chr3 52510592 . G A 222 . DP=69;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,20,47;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr3 52512318 . A G 222 . DP=60;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,26,29;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr3 52513940 . T C 73 . DP=9;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,9;MQ=57;FQ=-54 GT:PL:GQ 1/1:106,27,0:51 chr3 52518786 . T C 222 . DP=17;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,2,14;MQ=59;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr3 52519854 . G C 159 . DP=73;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,24,10,19;MQ=60;FQ=162;PV4=0.8,8.9e-14,0.12,1 GT:PL:GQ 0/1:189,0,255:99 chr3 52523405 . C T 220 . DP=33;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,11,5,11;MQ=59;FQ=220;PV4=1,1,1,1 GT:PL:GQ 0/1:250,0,251:99 chr3 52536308 . A C 73.1 . DP=6;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:106,18,0:33 chr3 52536514 . G A 129 . DP=13;VDB=0.0014;AF1=0.5;AC1=1;DP4=4,1,6,1;MQ=60;FQ=94;PV4=1,1,1,1 GT:PL:GQ 0/1:159,0,121:99 chr3 52537969 . T C 188 . DP=33;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,15;MQ=59;FQ=-114 GT:PL:GQ 1/1:221,87,0:99 chr3 52544470 . A G 222 . DP=74;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,16,56;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr3 52546487 . C T 66 . DP=54;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,22,9,9;MQ=60;FQ=69;PV4=0.38,1.4e-17,1,1 GT:PL:GQ 0/1:96,0,255:99 chr3 52546820 . C T 88 . DP=38;VDB=0.0216;AF1=0.5;AC1=1;DP4=12,9,11,6;MQ=60;FQ=91;PV4=0.74,1.3e-09,1,1 GT:PL:GQ 0/1:118,0,255:99 chr3 52551010 . C T 49 . DP=15;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,2,5,3;MQ=60;FQ=52;PV4=1,3.1e-07,1,0.36 GT:PL:GQ 0/1:79,0,143:82 chr3 52551265 . T C 222 . DP=49;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,31,15;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr3 52551284 . G T 222 . DP=50;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,34,11;MQ=59;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr3 52552916 . A G 36 . DP=4;VDB=0.0030;AF1=0.5008;AC1=1;DP4=0,1,0,3;MQ=60;FQ=-4.12;PV4=1,0.32,1,0.23 GT:PL:GQ 0/1:66,0,25:28 chr3 52553625 . TGTAAGT TGT 214 . INDEL;DP=57;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,9,40;MQ=51;FQ=-183 GT:PL:GQ 1/1:255,148,0:99 chr3 52554304 . G C 175 . DP=129;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,39,71;MQ=59;FQ=-282 GT:PL:GQ 1/1:208,255,0:99 chr3 52555316 . G A 100 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:133,18,0:33 chr3 52555957 . T C 222 . DP=73;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,33,24;MQ=59;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr3 52556369 . C T 225 . DP=84;VDB=0.0398;AF1=0.5;AC1=1;DP4=20,27,17,17;MQ=60;FQ=225;PV4=0.65,0.1,1,0.49 GT:PL:GQ 0/1:255,0,255:99 chr3 52556890 . A G 225 . DP=54;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,16,12,12;MQ=60;FQ=225;PV4=0.39,0.36,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 52557038 . C T 225 . DP=41;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,7,9,10;MQ=60;FQ=225;PV4=0.51,0.27,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 52558008 . T C 222 . DP=49;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,25,21;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr3 52558133 . T C 225 . DP=186;VDB=0.0380;AF1=0.5;AC1=1;DP4=78,32,45,25;MQ=60;FQ=225;PV4=0.41,0.011,1,0.41 GT:PL:GQ 0/1:255,0,255:99 chr3 52558904 . A T 225 . DP=63;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,15,12,10;MQ=60;FQ=225;PV4=0.79,0.1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 52559167 . CGGGGGGGGGGGGG CGGGGGGGGG 71.5 . INDEL;DP=19;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,4,8,0;MQ=52;FQ=24.5;PV4=0.002,1,0.049,1 GT:PL:GQ 0/1:109,0,59:62 chr3 52561779 . C T 159 . DP=84;VDB=0.0399;AF1=0.5;AC1=1;DP4=31,16,18,17;MQ=60;FQ=162;PV4=0.26,2.7e-22,1,1 GT:PL:GQ 0/1:189,0,255:99 chr3 52584431 . TCT TCTCCT 217 . INDEL;DP=18;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,2,8,1;MQ=56;FQ=217;PV4=1,1,0.28,0.44 GT:PL:GQ 0/1:255,0,255:99 chr3 52659079 . T C 96 . DP=18;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,10,0,7;MQ=60;FQ=99;PV4=1,0.44,1,1 GT:PL:GQ 0/1:126,0,159:99 chr3 52677478 . G A 88 . DP=26;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,9,2,12;MQ=59;FQ=91;PV4=1,5.7e-12,0.19,1 GT:PL:GQ 0/1:118,0,206:99 chr3 52720080 . A C 225 . DP=100;VDB=0.0298;AF1=0.5;AC1=1;DP4=33,15,33,16;MQ=60;FQ=225;PV4=1,0.42,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 52817149 . TGGGGGTCTCAGGC T 42.5 . INDEL;DP=27;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,10,1,5;MQ=53;FQ=45.5;PV4=0.62,1.9e-10,0,1 GT:PL:GQ 0/1:80,0,255:83 chr3 52829607 . T C 24 . DP=22;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,6,6,2;MQ=60;FQ=27;PV4=0.65,1.7e-11,1,1 GT:PL:GQ 0/1:54,0,255:57 chr3 52830764 . C T 225 . DP=60;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,16,14,13;MQ=59;FQ=225;PV4=0.79,0.16,1,0.19 GT:PL:GQ 0/1:255,0,255:99 chr3 52833805 . C A 70 . DP=31;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,4,6,6;MQ=59;FQ=73;PV4=0.14,1.1e-14,1,0.41 GT:PL:GQ 0/1:100,0,255:99 chr3 52837793 . T C 58.1 . DP=4;VDB=0.0040;AF1=0.508;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-12.3;PV4=1,1,1,1 GT:PL:GQ 0/1:88,0,15:18 chr3 52838654 . C T 36 . DP=18;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,3,5,1;MQ=60;FQ=39;PV4=1,0.0018,1,0.23 GT:PL:GQ 0/1:66,0,214:69 chr3 52847544 . C A 121 . DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,16,10,14;MQ=59;FQ=124;PV4=0.19,2.3e-15,1,1 GT:PL:GQ 0/1:151,0,255:99 chr3 52847601 . C T 160 . DP=25;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,9,2,10;MQ=60;FQ=163;PV4=1,0.17,1,1 GT:PL:GQ 0/1:190,0,225:99 chr3 52851137 . T C 53 . DP=12;VDB=0.0110;AF1=0.5;AC1=1;DP4=0,8,0,4;MQ=60;FQ=56;PV4=1,1,1,0.13 GT:PL:GQ 0/1:83,0,136:86 chr3 52852106 . C A 3.01 . DP=15;VDB=0.0090;AF1=0.4997;AC1=1;DP4=7,5,1,1;MQ=60;FQ=4.77;PV4=1,0.28,1,0.32 GT:PL:GQ 0/1:30,0,255:28 chr3 52853340 . G C 12.7 . DP=5;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:45,12,0:18 chr3 52857778 . T A 105 . DP=63;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,20,13,17;MQ=59;FQ=108;PV4=0.8,3.5e-20,0.48,0.36 GT:PL:GQ 0/1:135,0,255:99 chr3 52864584 . A G 172 . DP=86;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,29,15,24;MQ=60;FQ=175;PV4=0.82,9.8e-23,0.15,0.38 GT:PL:GQ 0/1:202,0,255:99 chr3 52864635 . A G 212 . DP=58;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,27,4,18;MQ=60;FQ=215;PV4=1,1,0.11,1 GT:PL:GQ 0/1:242,0,255:99 chr3 52867288 . A T 220 . DP=66;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,37,26;MQ=60;FQ=-217 GT:PL:GQ 1/1:253,190,0:99 chr3 52867595 . C A 59 . DP=41;VDB=0.0118;AF1=0.5;AC1=1;DP4=17,2,11,5;MQ=60;FQ=62;PV4=0.21,3.7e-11,1,0.2 GT:PL:GQ 0/1:89,0,222:92 chr3 52867715 . G C 222 . DP=73;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,36;MQ=59;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr3 52867811 . A T 199 . DP=73;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,39,30;MQ=60;FQ=-235 GT:PL:GQ 1/1:232,208,0:99 chr3 52868664 . agatgcg a 30.5 . INDEL;DP=31;VDB=0.0081;AF1=0.5;AC1=1;DP4=5,0,1,1;MQ=57;FQ=33.5;PV4=0.29,1,0.059,0.00032 GT:PL:GQ 0/1:68,0,100:71 chr3 52870729 . CA CAA 214 . INDEL;DP=51;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,18,32;MQ=60;FQ=-186 GT:PL:GQ 1/1:255,151,0:99 chr3 52874446 . C T 54 . DP=13;VDB=0.0066;AF1=0.5;AC1=1;DP4=8,0,5,0;MQ=58;FQ=57;PV4=1,0.002,1,1 GT:PL:GQ 0/1:84,0,148:87 chr3 52877647 . CA CAA 214 . INDEL;DP=34;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,23,11;MQ=60;FQ=-137 GT:PL:GQ 1/1:255,102,0:99 chr3 52877720 . T C 222 . DP=58;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,34,23;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr3 52878721 . G C 53.3 . DP=5;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,5,0;MQ=55;FQ=-42 GT:PL:GQ 1/1:86,15,0:27 chr3 52878746 . CA CAGA 214 . INDEL;DP=12;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,11,1;MQ=58;FQ=-70.5 GT:PL:GQ 1/1:255,36,0:69 chr3 52878825 . C A 222 . DP=57;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,38,17;MQ=59;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr3 52881634 . TGG TGGG 214 . INDEL;DP=28;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,16;MQ=60;FQ=-119 GT:PL:GQ 1/1:255,84,0:99 chr3 52883654 . CT C 88.7 . INDEL;DP=5;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:129,15,0:27 chr3 52883862 . C T 225 . DP=65;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,17,20,12;MQ=59;FQ=225;PV4=0.21,0.24,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 52952433 . C T 4.77 . DP=6;VDB=0.0156;AF1=0.4999;AC1=1;DP4=3,0,3,0;MQ=60;FQ=6.98;PV4=1,0.00021,1,1 GT:PL:GQ 0/1:33,0,84:33 chr3 52960013 . GCC GC 214 . INDEL;DP=37;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,33,4;MQ=59;FQ=-146 GT:PL:GQ 1/1:255,111,0:99 chr3 52960256 . AGGGG AGGG 175 . INDEL;DP=33;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,25;MQ=60;FQ=-122 GT:PL:GQ 1/1:216,87,0:99 chr3 52968726 . T C 123 . DP=22;VDB=0.0011;AF1=0.5;AC1=1;DP4=11,2,8,1;MQ=59;FQ=126;PV4=1,0.094,1,0.17 GT:PL:GQ 0/1:153,0,226:99 chr3 52968801 . T C 222 . DP=47;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,31,15;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr3 53003021 . G C 41 . DP=20;VDB=0.0025;AF1=0.5;AC1=1;DP4=10,0,10,0;MQ=60;FQ=44;PV4=1,4.9e-10,1,1 GT:PL:GQ 0/1:71,0,156:74 chr3 53003179 . A C 130 . DP=138;VDB=0.0392;AF1=0.5;AC1=1;DP4=31,41,33,28;MQ=60;FQ=133;PV4=0.23,7.1e-43,1,1 GT:PL:GQ 0/1:160,0,255:99 chr3 53125922 . T C 162 . DP=40;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,5,15,1;MQ=60;FQ=165;PV4=0.37,0.48,1,1 GT:PL:GQ 0/1:192,0,255:99 chr3 53126143 . G A 115 . DP=46;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,13,5,26;MQ=60;FQ=118;PV4=1,3.2e-21,1,1 GT:PL:GQ 0/1:145,0,193:99 chr3 53133526 . A G 111 . DP=33;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,11,3,14;MQ=59;FQ=114;PV4=0.44,6e-08,1,1 GT:PL:GQ 0/1:141,0,255:99 chr3 53212574 . C G 32 . DP=8;VDB=0.0343;AF1=0.5;AC1=1;DP4=1,2,2,2;MQ=60;FQ=35;PV4=1,0.002,1,0.22 GT:PL:GQ 0/1:62,0,81:65 chr3 53213538 . C G 79 . DP=51;VDB=0.0271;AF1=0.5;AC1=1;DP4=24,6,18,2;MQ=60;FQ=82;PV4=0.45,3.5e-12,1,0.34 GT:PL:GQ 0/1:109,0,255:99 chr3 53215875 . A C 189 . DP=39;VDB=0.0373;AF1=0.5;AC1=1;DP4=12,10,5,9;MQ=59;FQ=192;PV4=0.32,0.0035,0.37,0.42 GT:PL:GQ 0/1:219,0,255:99 chr3 53216024 . C T 35 . DP=10;VDB=0.0053;AF1=0.5001;AC1=1;DP4=0,2,0,8;MQ=58;FQ=7.8;PV4=1,0.0019,0.32,1 GT:PL:GQ 0/1:65,0,34:37 chr3 53216051 . T C 8.61 . DP=3;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:40,9,0:12 chr3 53220129 . G T 124 . DP=75;VDB=0.0398;AF1=0.5;AC1=1;DP4=15,21,10,24;MQ=60;FQ=127;PV4=0.33,2.1e-22,1,0.12 GT:PL:GQ 0/1:154,0,255:99 chr3 53220215 . G A 192 . DP=90;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,14,29,17;MQ=60;FQ=195;PV4=1,1.2e-21,0.18,0.14 GT:PL:GQ 0/1:222,0,255:99 chr3 53220375 . G A 202 . DP=38;VDB=0.0216;AF1=0.5;AC1=1;DP4=1,13,2,20;MQ=59;FQ=153;PV4=1,0.43,0.13,1 GT:PL:GQ 0/1:232,0,180:99 chr3 53220444 . T C 14.1 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:46,9,0:14 chr3 53220569 . G A 45 . DP=38;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,7,10,3;MQ=60;FQ=48;PV4=1,3e-10,1,0.26 GT:PL:GQ 0/1:75,0,255:78 chr3 53220763 . GCTCAGAGCC GC 104 . INDEL;DP=40;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,14,2,11;MQ=51;FQ=107;PV4=0.43,9.3e-06,1.2e-16,1 GT:PL:GQ 0/1:142,0,255:99 chr3 53222761 . C T 222 . DP=62;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,34;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr3 53223286 . gctggtctgg gctgg 137 . INDEL;DP=14;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,3,1,3;MQ=60;FQ=140;PV4=1,0.099,1,0.4 GT:PL:GQ 0/1:175,0,237:99 chr3 53223927 . C G 163 . DP=71;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,44,21;MQ=60;FQ=-223 GT:PL:GQ 1/1:196,196,0:99 chr3 53224002 . T C 147 . DP=80;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,30,35;MQ=60;FQ=-223 GT:PL:GQ 1/1:180,196,0:99 chr3 53259850 . C T 138 . DP=43;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,15,7,16;MQ=59;FQ=141;PV4=0.74,6.2e-13,1,0.19 GT:PL:GQ 0/1:168,0,255:99 chr3 53260710 . G A 124 . DP=17;VDB=0.0033;AF1=0.5;AC1=1;DP4=7,0,9,0;MQ=59;FQ=108;PV4=1,1,0.2,0.025 GT:PL:GQ 0/1:154,0,135:99 chr3 53260716 . C T 131 . DP=21;VDB=0.0053;AF1=0.5;AC1=1;DP4=9,0,11,0;MQ=59;FQ=119;PV4=1,0.47,0.19,0.25 GT:PL:GQ 0/1:161,0,146:99 chr3 53260903 . G C 101 . DP=64;VDB=0.0373;AF1=0.5;AC1=1;DP4=11,29,8,13;MQ=58;FQ=104;PV4=0.4,9.7e-14,1,1 GT:PL:GQ 0/1:131,0,255:99 chr3 53260958 . G C 64 . DP=35;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,13,2,16;MQ=60;FQ=67;PV4=1,8.2e-17,1,1 GT:PL:GQ 0/1:94,0,197:97 chr3 53262400 . G C 130 . DP=59;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,24,6,15;MQ=60;FQ=133;PV4=1,1.6e-15,1,1 GT:PL:GQ 0/1:160,0,255:99 chr3 53262472 . G A 88 . DP=10;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,3,0,6;MQ=60;FQ=79.7;PV4=0.4,0.15,1,1 GT:PL:GQ 0/1:118,0,107:99 chr3 53263200 . C G 97 . DP=49;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,15,9,14;MQ=59;FQ=100;PV4=1,7.6e-15,0.16,1 GT:PL:GQ 0/1:127,0,255:99 chr3 53263279 . A G 222 . DP=42;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,17,22;MQ=59;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr3 53264485 . A G 53 . DP=45;VDB=0.0244;AF1=0.5;AC1=1;DP4=26,2,15,0;MQ=60;FQ=56;PV4=0.53,9.8e-13,1,1 GT:PL:GQ 0/1:83,0,243:86 chr3 53267100 . C A 75 . DP=14;VDB=0.0019;AF1=0.5;AC1=1;DP4=9,0,5,0;MQ=60;FQ=78;PV4=1,1,1,1 GT:PL:GQ 0/1:105,0,150:99 chr3 53267133 . G C 171 . DP=29;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,24,5;MQ=60;FQ=-114 GT:PL:GQ 1/1:204,87,0:99 chr3 53267155 . G A 136 . DP=39;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,3,17,4;MQ=60;FQ=139;PV4=1,6.4e-10,1,1 GT:PL:GQ 0/1:166,0,216:99 chr3 53267296 . G A 55 . DP=31;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,13,3,12;MQ=60;FQ=58;PV4=1,5.4e-17,1,0.46 GT:PL:GQ 0/1:85,0,226:88 chr3 53267342 . G A 55 . DP=17;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,8,1,6;MQ=60;FQ=58;PV4=1,6.5e-05,1,1 GT:PL:GQ 0/1:85,0,167:88 chr3 53269046 . T C 225 . DP=35;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,7,13,5;MQ=59;FQ=218;PV4=0.48,1,1,1 GT:PL:GQ 0/1:255,0,245:99 chr3 53269163 . G A 109 . DP=27;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,11,1,8;MQ=60;FQ=112;PV4=0.36,0.3,1,0.15 GT:PL:GQ 0/1:139,0,255:99 chr3 53276052 . G A 31 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:63,9,0:16 chr3 53277476 . C T 13.2 . DP=8;VDB=0.0112;AF1=0.5;AC1=1;DP4=5,1,2,0;MQ=60;FQ=16.1;PV4=1,1,1,0.46 GT:PL:GQ 0/1:43,0,134:46 chr3 53277653 . G T 8.64 . DP=16;VDB=0.0219;AF1=0.5;AC1=1;DP4=0,9,1,3;MQ=60;FQ=11.3;PV4=0.31,8.8e-07,1,0.21 GT:PL:GQ 0/1:38,0,158:40 chr3 53277675 . C T,A 50 . DP=11;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,11;MQ=60;FQ=-51 GT:PL:GQ 1/1:99,40,16,82,0,73:45 chr3 53321631 . A C 161 . DP=75;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,24,9,26;MQ=60;FQ=164;PV4=0.33,2.2e-26,1,0.18 GT:PL:GQ 0/1:191,0,255:99 chr3 53324819 . ATGGCACTGGCACTGG ATGGCACTGG 106 . INDEL;DP=23;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,20,0;MQ=29;FQ=-94.5 GT:PL:GQ 1/1:147,60,0:99 chr3 53324915 . A G 184 . DP=34;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,7,26;MQ=41;FQ=-126 GT:PL:GQ 1/1:217,99,0:99 chr3 53529140 . T C 55 . DP=15;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,3,4,3;MQ=60;FQ=58;PV4=1,3.8e-05,1,0.27 GT:PL:GQ 0/1:85,0,157:88 chr3 53685039 . T C 222 . DP=31;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,6,25;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr3 53700550 . T C 222 . DP=29;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,6,21;MQ=60;FQ=-81;PV4=1,1,1,1 GT:PL:GQ 1/1:255,54,0:99 chr3 53758049 . G A 73 . DP=58;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,18,6,25;MQ=60;FQ=76;PV4=0.37,7.5e-26,1,1 GT:PL:GQ 0/1:103,0,255:99 chr3 53766026 . T C 222 . DP=37;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,19,18;MQ=59;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr3 53776995 . T C 165 . DP=33;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,25,7;MQ=60;FQ=-123 GT:PL:GQ 1/1:198,96,0:99 chr3 53777176 . T C 110 . DP=47;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,19,6,12;MQ=60;FQ=113;PV4=1,6.6e-11,1,1 GT:PL:GQ 0/1:140,0,255:99 chr3 53778621 . G A 9.52 . DP=6;VDB=0.0124;AF1=0.5;AC1=1;DP4=4,0,2,0;MQ=60;FQ=12.3;PV4=1,0.026,1,0.46 GT:PL:GQ 0/1:39,0,103:41 chr3 53778875 . G T 119 . DP=19;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,6,3,10;MQ=60;FQ=88;PV4=0.52,4.5e-09,1,1 GT:PL:GQ 0/1:149,0,115:99 chr3 53796706 . A C 100 . DP=49;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,20,2,26;MQ=60;FQ=103;PV4=0.5,4.4e-25,1,0.47 GT:PL:GQ 0/1:130,0,175:99 chr3 53806803 . G C 51 . DP=21;VDB=0.0099;AF1=0.5;AC1=1;DP4=3,1,15,2;MQ=60;FQ=41.7;PV4=0.49,3.6e-10,1,1 GT:PL:GQ 0/1:81,0,69:72 chr3 53806817 . G A 84 . DP=30;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,2,18,4;MQ=60;FQ=77.5;PV4=0.61,1.3e-09,1,1 GT:PL:GQ 0/1:114,0,105:99 chr3 53814197 . G A 50 . DP=18;VDB=0.0325;AF1=0.5;AC1=1;DP4=2,6,1,7;MQ=60;FQ=53;PV4=1,6.9e-07,1,0.34 GT:PL:GQ 0/1:80,0,180:83 chr3 53856653 . C T 149 . DP=29;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,26;MQ=60;FQ=-111 GT:PL:GQ 1/1:182,84,0:99 chr3 53857803 . A C 222 . DP=23;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,4;MQ=58;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr3 53880789 . A G 142 . DP=21;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,17;MQ=60;FQ=-84 GT:PL:GQ 1/1:175,57,0:99 chr3 53882663 . G A 222 . DP=112;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,52,58;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 53882673 . GTTTTTT GTTTTTTT 144 . INDEL;DP=117;VDB=0.0392;AF1=1;AC1=2;DP4=1,0,47,62;MQ=60;FQ=-290;PV4=0.44,1,0.45,1 GT:PL:GQ 1/1:185,255,0:99 chr3 53883722 . C G 59 . DP=18;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,5,3;MQ=57;FQ=-51 GT:PL:GQ 1/1:92,24,0:45 chr3 53883910 . C T 142 . DP=9;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:175,24,0:45 chr3 53886912 . C T 225 . DP=75;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,16,21,16;MQ=60;FQ=225;PV4=1,0.16,1,0.1 GT:PL:GQ 0/1:255,0,255:99 chr3 53890787 . G A 8.64 . DP=6;VDB=0.0007;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=11.3;PV4=1,0.00088,1,0.019 GT:PL:GQ 0/1:38,0,57:40 chr3 53892641 . T G 66 . DP=67;VDB=0.0190;AF1=0.5;AC1=1;DP4=32,9,20,5;MQ=60;FQ=69;PV4=1,9.9e-23,1,1 GT:PL:GQ 0/1:96,0,255:99 chr3 53905308 . T C 88 . DP=84;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,14,17,17;MQ=60;FQ=91;PV4=0.81,4.3e-30,0.18,1 GT:PL:GQ 0/1:118,0,255:99 chr3 53906513 . G A 156 . DP=51;VDB=0.0384;AF1=0.5;AC1=1;DP4=10,16,11,13;MQ=59;FQ=159;PV4=0.77,5.5e-09,0.48,0.5 GT:PL:GQ 0/1:186,0,255:99 chr3 53906951 . A G 4.77 . DP=8;VDB=0.0060;AF1=0.4999;AC1=1;DP4=5,0,3,0;MQ=60;FQ=6.99;PV4=1,1.9e-06,1,1 GT:PL:GQ 0/1:33,0,123:33 chr3 53910121 . AG A 136 . INDEL;DP=36;VDB=0.0099;AF1=0.5;AC1=1;DP4=4,18,1,13;MQ=60;FQ=139;PV4=0.63,3.8e-08,1,1 GT:PL:GQ 0/1:174,0,255:99 chr3 53912341 . C A 44 . DP=69;VDB=0.0322;AF1=0.5;AC1=1;DP4=25,1,35,5;MQ=60;FQ=47;PV4=0.39,5.6e-43,0.21,0.11 GT:PL:GQ 0/1:74,0,198:77 chr3 53916130 . A G 225 . DP=83;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,27,16,23;MQ=59;FQ=225;PV4=0.82,0.36,1,0.43 GT:PL:GQ 0/1:255,0,255:99 chr3 53921022 . T C 46 . DP=32;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,6,3,9;MQ=60;FQ=49;PV4=0.23,6.2e-15,1,0.15 GT:PL:GQ 0/1:76,0,255:79 chr3 53921028 . T G 32 . DP=33;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,7,2,10;MQ=60;FQ=35;PV4=0.11,8.2e-18,1,0.33 GT:PL:GQ 0/1:62,0,255:65 chr3 53922620 . A G 225 . DP=62;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,22,7,27;MQ=60;FQ=225;PV4=1,0.055,1,0.4 GT:PL:GQ 0/1:255,0,255:99 chr3 54354510 . T C 163 . DP=52;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,16,12,13;MQ=60;FQ=166;PV4=0.78,6.8e-12,1,0.27 GT:PL:GQ 0/1:193,0,255:99 chr3 54604188 . T C 163 . DP=15;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:196,36,0:69 chr3 54615971 . A G 140 . DP=16;VDB=0.0164;AF1=0.5;AC1=1;DP4=3,6,2,5;MQ=60;FQ=143;PV4=1,1,1,1 GT:PL:GQ 0/1:170,0,204:99 chr3 54676441 . CAAAAAA CAAAAA 10.4 . INDEL;DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:50,12,0:17 chr3 54798258 . G A 149 . DP=112;VDB=0.0365;AF1=0.5;AC1=1;DP4=31,21,24,33;MQ=60;FQ=152;PV4=0.085,5.9e-44,1,1 GT:PL:GQ 0/1:179,0,255:99 chr3 55003733 . G T 225 . DP=59;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,11,16,6;MQ=60;FQ=225;PV4=0.77,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 55018520 . T C 16.1 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:48,9,0:15 chr3 55021556 . G C 186 . DP=35;VDB=0.0140;AF1=0.5;AC1=1;DP4=15,2,16,2;MQ=60;FQ=189;PV4=1,0.13,1,1 GT:PL:GQ 0/1:216,0,230:99 chr3 55038898 . A G 201 . DP=74;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,35,5,17;MQ=59;FQ=204;PV4=1,1,1,1 GT:PL:GQ 0/1:231,0,255:99 chr3 55041723 . G T 196 . DP=32;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,1,13,2;MQ=60;FQ=183;PV4=0.59,1,1,0.26 GT:PL:GQ 0/1:226,0,210:99 chr3 55107944 . A G 225 . DP=68;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,22,9,22;MQ=59;FQ=225;PV4=0.45,0.39,0.029,0.48 GT:PL:GQ 0/1:255,0,255:99 chr3 55107996 . TTTCATTCA TTTCA 217 . INDEL;DP=31;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,12,1,12;MQ=57;FQ=217;PV4=0.6,0.011,0.026,1 GT:PL:GQ 0/1:255,0,255:99 chr3 55108055 . G A 222 . DP=16;VDB=0.0284;AF1=1;AC1=2;DP4=0,0,9,7;MQ=57;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr3 55108149 . A G 115 . DP=71;VDB=0.0399;AF1=0.5;AC1=1;DP4=30,5,29,3;MQ=55;FQ=118;PV4=0.71,5e-19,3.8e-05,1 GT:PL:GQ 0/1:145,0,255:99 chr3 55108188 . A G 163 . DP=90;VDB=0.0298;AF1=0.5;AC1=1;DP4=34,12,34,9;MQ=54;FQ=166;PV4=0.62,1.1e-26,6.8e-09,1 GT:PL:GQ 0/1:193,0,255:99 chr3 55108234 . CACTGACTGAGATGTTCTCTTACTGACTGAGATGTTCTCTT CACTGACTGAGATGTTCTCTT 34.5 . INDEL;DP=124;VDB=0.0392;AF1=0.5;AC1=1;DP4=37,27,4,8;MQ=57;FQ=37.5;PV4=0.21,0.43,1.9e-39,1 GT:PL:GQ 0/1:72,0,255:75 chr3 55108358 . A G 107 . DP=47;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,27,0,18;MQ=53;FQ=110;PV4=1,0.12,8.1e-08,0.43 GT:PL:GQ 0/1:137,0,220:99 chr3 55886573 . taaaaaaaaa taaaaaaa 13.9 . INDEL;DP=5;VDB=0.0081;AF1=0.5263;AC1=1;DP4=0,1,1,2;MQ=60;FQ=-24.5;PV4=1,0.29,1,0.4 GT:PL:GQ 0/1:51,0,10:13 chr3 56019905 . C A 101 . DP=48;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,6,16,4;MQ=60;FQ=104;PV4=0.73,2.3e-07,1,1 GT:PL:GQ 0/1:131,0,254:99 chr3 56026034 . C G 71 . DP=15;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,0,10,1;MQ=60;FQ=42;PV4=1,0.0028,1,0.17 GT:PL:GQ 0/1:101,0,69:72 chr3 56037025 . CA CATA 217 . INDEL;DP=67;VDB=0.0380;AF1=0.5;AC1=1;DP4=34,5,27,1;MQ=59;FQ=217;PV4=0.39,1,0.018,0.2 GT:PL:GQ 0/1:255,0,255:99 chr3 56037249 . A AG 49.5 . INDEL;DP=21;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,12;MQ=45;FQ=-70.5 GT:PL:GQ 1/1:90,36,0:69 chr3 56330401 . G T 125 . DP=66;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,19,12,17;MQ=60;FQ=128;PV4=0.8,6.8e-21,1,1 GT:PL:GQ 0/1:155,0,255:99 chr3 56591178 . A G 80 . DP=12;VDB=0.0140;AF1=0.5;AC1=1;DP4=5,0,7,0;MQ=52;FQ=58;PV4=1,0.35,1,1 GT:PL:GQ 0/1:110,0,85:88 chr3 56591278 . Tggggtaagcaggggtaagc TGGGGTAAGCAggggtaagcaggggtaagc 214 . INDEL;DP=48;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,10,7;MQ=44;FQ=-85.5 GT:PL:GQ 1/1:255,51,0:99 chr3 56593543 . C A 84 . DP=15;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,14,1;MQ=60;FQ=-72 GT:PL:GQ 1/1:117,45,0:87 chr3 56593680 . T C 222 . DP=31;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,17;MQ=59;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr3 56597688 . A G 56 . DP=14;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,2,7,2;MQ=58;FQ=59;PV4=0.58,1.5e-07,0.24,0.43 GT:PL:GQ 0/1:86,0,132:89 chr3 56597954 . C T 162 . DP=51;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,28,19;MQ=60;FQ=-168 GT:PL:GQ 1/1:195,141,0:99 chr3 56599159 . T C 218 . DP=48;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,14,6,10;MQ=57;FQ=220;PV4=0.36,1,0.1,1 GT:PL:GQ 0/1:248,0,255:99 chr3 56599208 . G C 83 . DP=32;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,19,4,8;MQ=54;FQ=86;PV4=0.053,5.4e-11,0.21,0.45 GT:PL:GQ 0/1:113,0,210:99 chr3 56599258 . GTATT GTATTTATT 147 . INDEL;DP=13;VDB=0.0081;AF1=0.5003;AC1=1;DP4=0,1,0,9;MQ=44;FQ=-5.84;PV4=1,1,0.12,0.32 GT:PL:GQ 0/1:185,0,30:33 chr3 56627048 . A G 107 . DP=10;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,6;MQ=60;FQ=-57 GT:PL:GQ 1/1:140,30,0:57 chr3 56627598 . A G 222 . DP=62;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,36,22;MQ=59;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr3 56628031 . G A 165 . DP=182;VDB=0.0322;AF1=0.5;AC1=1;DP4=40,53,31,55;MQ=59;FQ=168;PV4=0.36,4.3e-70,1,1 GT:PL:GQ 0/1:195,0,255:99 chr3 56650051 . ACTTCT ACTTCTTCT 217 . INDEL;DP=21;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,7,5,6;MQ=55;FQ=217;PV4=0.37,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 56650178 . A G 17.1 . DP=3;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,0,3;MQ=52;FQ=-36 GT:PL:GQ 1/1:49,9,0:15 chr3 56653609 . CGT C 217 . INDEL;DP=51;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,23,5,10;MQ=60;FQ=217;PV4=1,6.7e-13,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 56654002 . GTTTGTTTT GTTT 217 . INDEL;DP=53;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,23,1,20;MQ=55;FQ=217;PV4=1,1.9e-09,1.5e-05,0.044 GT:PL:GQ 0/1:255,0,255:99 chr3 56658481 . G C 225 . DP=123;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,15,42,34;MQ=60;FQ=225;PV4=0.34,1,1,0.47 GT:PL:GQ 0/1:255,0,255:99 chr3 56667682 . G C 225 . DP=145;VDB=0.0392;AF1=0.5;AC1=1;DP4=40,38,41,21;MQ=59;FQ=225;PV4=0.087,1,0.22,1 GT:PL:GQ 0/1:255,0,255:99 chr3 56672608 . G C 14.2 . DP=5;VDB=0.0318;AF1=0.5005;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-3.05;PV4=1,0.0023,1,1 GT:PL:GQ 0/1:44,0,27:30 chr3 56674190 . A C 165 . DP=30;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,17,3,7;MQ=60;FQ=168;PV4=0.31,0.42,1,1 GT:PL:GQ 0/1:195,0,244:99 chr3 56694664 . C A 20 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,3,0;MQ=52;FQ=-36 GT:PL:GQ 1/1:52,9,0:15 chr3 56694877 . A G 95 . DP=56;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,10,13,20;MQ=60;FQ=98;PV4=0.41,3.3e-31,0.22,1 GT:PL:GQ 0/1:125,0,255:99 chr3 56703746 . A C 132 . DP=26;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,9,6,7;MQ=60;FQ=135;PV4=0.69,1.5e-08,1,1 GT:PL:GQ 0/1:162,0,228:99 chr3 56716922 . T G 104 . DP=46;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,12,12,13;MQ=59;FQ=107;PV4=0.37,7.4e-17,1,0.27 GT:PL:GQ 0/1:134,0,255:99 chr3 56785512 . C T 41 . DP=65;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,31,2,25;MQ=60;FQ=44;PV4=0.45,2.6e-26,1,1 GT:PL:GQ 0/1:71,0,255:74 chr3 56835761 . G A 114 . DP=53;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,13,16,9;MQ=59;FQ=117;PV4=0.4,3.3e-17,1,0.056 GT:PL:GQ 0/1:144,0,255:99 chr3 56932708 . G A 3.01 . DP=5;VDB=0.0120;AF1=0.4998;AC1=1;DP4=1,2,0,2;MQ=60;FQ=4.77;PV4=1,0.39,1,1 GT:PL:GQ 0/1:30,0,62:28 chr3 57011234 . T C 103 . DP=61;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,13,14,7;MQ=60;FQ=106;PV4=1,1.3e-13,1,0.43 GT:PL:GQ 0/1:133,0,255:99 chr3 57108101 . C T 145 . DP=57;VDB=0.0393;AF1=0.5;AC1=1;DP4=15,14,16,10;MQ=60;FQ=148;PV4=0.59,1.7e-21,1,1 GT:PL:GQ 0/1:175,0,255:99 chr3 57131529 . A C 222 . DP=141;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,76,58;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 57132200 . A G 138 . DP=84;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,23,18,24;MQ=59;FQ=141;PV4=1,4.7e-23,1,0.057 GT:PL:GQ 0/1:168,0,255:99 chr3 57137090 . A G 184 . DP=64;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,44,15;MQ=60;FQ=-205 GT:PL:GQ 1/1:217,178,0:99 chr3 57138419 . G A 225 . DP=68;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,18,18,13;MQ=60;FQ=225;PV4=0.62,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 57139833 . G A 16.1 . DP=6;VDB=0.0053;AF1=0.5012;AC1=1;DP4=1,0,5,0;MQ=60;FQ=-5.46;PV4=1,0.00045,1,0.3 GT:PL:GQ 0/1:46,0,23:26 chr3 57139972 . A G 222 . DP=45;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,30,11;MQ=60;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr3 57140108 . G A 147 . DP=96;VDB=0.0345;AF1=0.5;AC1=1;DP4=20,29,19,25;MQ=60;FQ=150;PV4=0.84,1.7e-32,1,1 GT:PL:GQ 0/1:177,0,255:99 chr3 57203398 . C A 60 . DP=8;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:93,24,0:45 chr3 57303548 . CTTTTTT CTTTTTTT 10.8 . INDEL;DP=47;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,3,24,1;MQ=59;FQ=13.4;PV4=0.31,1,1,1 GT:PL:GQ 0/1:48,0,60:50 chr3 57314594 . A G 33.5 . DP=4;VDB=0.0059;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:66,12,0:21 chr3 57335705 . Tacacacacacacacacacacacacacacacacacacacacacacacacaca Tacacacacacacacacacacacacacacacacacacacacacacaca 82.6 . INDEL;DP=7;VDB=0.0042;AF1=0.5207;AC1=1;DP4=1,0,5,0;MQ=52;FQ=-23.5;PV4=1,0.24,1,1 GT:PL:GQ 0/1:120,0,11:14 chr3 57335862 . A T 186 . DP=103;VDB=0.0398;AF1=0.5;AC1=1;DP4=27,20,27,25;MQ=58;FQ=189;PV4=0.69,6.1e-30,1,0.11 GT:PL:GQ 0/1:216,0,255:99 chr3 57414097 . T A 43 . DP=10;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:76,27,0:51 chr3 57414330 . C A 143 . DP=25;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,12,12;MQ=60;FQ=-99 GT:PL:GQ 1/1:176,72,0:99 chr3 57419497 . C T 181 . DP=70;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,47;MQ=60;FQ=-229 GT:PL:GQ 1/1:214,202,0:99 chr3 57422824 . A G 185 . DP=23;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,5,17;MQ=58;FQ=-93 GT:PL:GQ 1/1:218,66,0:99 chr3 57430988 . G A 222 . DP=59;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,49,8;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr3 57431740 . ataaataaataaT a 32.4 . INDEL;DP=7;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,3,0;MQ=29;FQ=-43.5 GT:PL:GQ 1/1:72,9,0:16 chr3 57431985 . G A 197 . DP=79;VDB=0.0365;AF1=1;AC1=2;DP4=0,1,8,69;MQ=60;FQ=-233;PV4=1,3.8e-08,1,0.22 GT:PL:GQ 1/1:230,206,0:99 chr3 57432064 . C T 77 . DP=8;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:110,24,0:45 chr3 57443817 . T C 184 . DP=54;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,26;MQ=60;FQ=-187 GT:PL:GQ 1/1:217,160,0:99 chr3 57456371 . T C 210 . DP=19;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,1,15;MQ=60;FQ=-75 GT:PL:GQ 1/1:243,48,0:93 chr3 57457123 . C T 32.5 . DP=7;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:65,12,0:21 chr3 57469053 . A C 139 . DP=23;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,21,2;MQ=59;FQ=-96 GT:PL:GQ 1/1:172,69,0:99 chr3 57469097 . C T 120 . DP=45;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,34,8;MQ=59;FQ=-153 GT:PL:GQ 1/1:153,126,0:99 chr3 57469272 . C T 180 . DP=19;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81 GT:PL:GQ 1/1:213,54,0:99 chr3 57475351 . T G 183 . DP=36;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,13,20;MQ=59;FQ=-126 GT:PL:GQ 1/1:216,99,0:99 chr3 57488279 . ttt tTTCtt 27.4 . INDEL;DP=5;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,3;MQ=29;FQ=-43.5 GT:PL:GQ 1/1:67,9,0:16 chr3 57542173 . C T 135 . DP=38;VDB=0.0216;AF1=0.5;AC1=1;DP4=16,2,14,4;MQ=60;FQ=138;PV4=0.66,1.4e-09,1,1 GT:PL:GQ 0/1:165,0,216:99 chr3 57542199 . G T 120 . DP=49;VDB=0.0216;AF1=0.5;AC1=1;DP4=19,10,14,4;MQ=60;FQ=123;PV4=0.52,3.9e-12,1,1 GT:PL:GQ 0/1:150,0,255:99 chr3 57563120 . GAAAAA GAAAA 5.79 . INDEL;DP=11;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,6,2,2;MQ=60;FQ=8.19;PV4=0.49,1,1,0.21 GT:PL:GQ 0/1:42,0,72:43 chr3 57582718 . GAAAAAAA GAAAA 194 . INDEL;DP=30;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,3,9,3;MQ=57;FQ=197;PV4=0.66,0.0067,0.0036,1 GT:PL:GQ 0/1:232,0,255:99 chr3 57613814 . CTGT CT 192 . INDEL;DP=13;VDB=0.0019;AF1=0.5;AC1=1;DP4=3,0,10,0;MQ=60;FQ=81.5;PV4=1,1.3e-05,1,1 GT:PL:GQ 0/1:230,0,116:99 chr3 57627500 . T C 222 . DP=24;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,2,22;MQ=58;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr3 57627580 . A C 30.8 . DP=2;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:62,6,0:10 chr3 57882601 . C T 196 . DP=32;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,6,8,5;MQ=60;FQ=199;PV4=0.72,0.079,1,0.13 GT:PL:GQ 0/1:226,0,255:99 chr3 57898376 . T A 99 . DP=85;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,28,10,33;MQ=60;FQ=102;PV4=0.34,1.5e-36,1,1 GT:PL:GQ 0/1:129,0,255:99 chr3 57994719 . T A 74 . DP=11;VDB=0.0011;AF1=0.5;AC1=1;DP4=1,2,1,6;MQ=60;FQ=43;PV4=1,0.0031,1,0.48 GT:PL:GQ 0/1:104,0,70:73 chr3 58080505 . G T 110 . DP=13;VDB=0.0011;AF1=0.5;AC1=1;DP4=5,0,8,0;MQ=60;FQ=76;PV4=1,0.33,1,1 GT:PL:GQ 0/1:140,0,103:99 chr3 58081888 . T C 225 . DP=60;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,9,14,9;MQ=60;FQ=225;PV4=0.26,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 58089585 . T A 11.3 . DP=6;VDB=0.0098;AF1=0.5;AC1=1;DP4=3,0,1,2;MQ=60;FQ=14.2;PV4=0.4,0.00053,1,0.39 GT:PL:GQ 0/1:41,0,77:43 chr3 58094157 . A G 60 . DP=31;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,10,8,5;MQ=59;FQ=63;PV4=0.47,5.3e-12,1,0.022 GT:PL:GQ 0/1:90,0,255:93 chr3 58094852 . C T 93 . DP=43;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,1,20,2;MQ=59;FQ=96;PV4=1,3.2e-18,0.099,0.13 GT:PL:GQ 0/1:123,0,205:99 chr3 58095466 . G T 36 . DP=15;VDB=0.0011;AF1=0.5;AC1=1;DP4=1,7,0,7;MQ=60;FQ=39;PV4=1,8.1e-10,1,1 GT:PL:GQ 0/1:66,0,173:69 chr3 58109162 . G A 184 . DP=85;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,21,26,20;MQ=60;FQ=187;PV4=0.27,6.5e-17,1,1 GT:PL:GQ 0/1:214,0,255:99 chr3 58110105 . G A 178 . DP=30;VDB=0.0373;AF1=0.5;AC1=1;DP4=12,4,7,5;MQ=58;FQ=181;PV4=0.43,0.29,0.42,0.35 GT:PL:GQ 0/1:208,0,246:99 chr3 58111285 . T G 75 . DP=73;VDB=0.0400;AF1=0.5;AC1=1;DP4=27,14,24,8;MQ=60;FQ=78;PV4=0.45,6.1e-29,1,0.06 GT:PL:GQ 0/1:105,0,255:99 chr3 58112440 . A G 225 . DP=34;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,9,6,12;MQ=60;FQ=215;PV4=0.73,1,1,1 GT:PL:GQ 0/1:255,0,242:99 chr3 58112488 . C T 76 . DP=27;VDB=0.0140;AF1=0.5;AC1=1;DP4=4,9,5,8;MQ=60;FQ=79;PV4=1,5.5e-10,1,1 GT:PL:GQ 0/1:106,0,236:99 chr3 58112556 . G C 21 . DP=11;VDB=0.0011;AF1=0.5;AC1=1;DP4=1,5,0,5;MQ=60;FQ=24;PV4=1,2e-07,1,1 GT:PL:GQ 0/1:51,0,141:54 chr3 58116316 . A G 9.31 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr3 58116358 . C T 35 . DP=6;VDB=0.0254;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=27.6;PV4=1,0.0065,1,1 GT:PL:GQ 0/1:65,0,55:58 chr3 58116369 . T C 63 . DP=8;VDB=0.0254;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=64.6;PV4=1,0.34,1,1 GT:PL:GQ 0/1:93,0,97:95 chr3 58118555 . G A 225 . DP=72;VDB=0.0298;AF1=0.5;AC1=1;DP4=26,7,29,9;MQ=60;FQ=225;PV4=1,0.29,1,0.49 GT:PL:GQ 0/1:255,0,255:99 chr3 58118700 . A G 225 . DP=62;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,22,4,25;MQ=59;FQ=225;PV4=0.21,0.41,0.48,0.44 GT:PL:GQ 0/1:255,0,255:99 chr3 58121626 . T A 64 . DP=36;VDB=0.0118;AF1=0.5;AC1=1;DP4=15,1,19,0;MQ=60;FQ=67;PV4=0.46,2.3e-14,1,1 GT:PL:GQ 0/1:94,0,198:97 chr3 58145263 . G A 88 . DP=34;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,7,8,4;MQ=60;FQ=91;PV4=1,5.6e-11,1,1 GT:PL:GQ 0/1:118,0,255:99 chr3 58154327 . C T 186 . DP=28;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,10,4,7;MQ=60;FQ=189;PV4=1,1,1,0.31 GT:PL:GQ 0/1:216,0,247:99 chr3 58156176 . G A 45 . DP=6;VDB=0.0040;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=45;PV4=1,0.47,1,0.13 GT:PL:GQ 0/1:75,0,75:75 chr3 58186911 . A G 163 . DP=29;VDB=0.0398;AF1=0.5;AC1=1;DP4=4,7,7,11;MQ=60;FQ=166;PV4=1,4.2e-07,1,1 GT:PL:GQ 0/1:193,0,208:99 chr3 58194051 . C A 140 . DP=79;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,23,7,33;MQ=60;FQ=143;PV4=0.27,3.1e-27,1,1 GT:PL:GQ 0/1:170,0,255:99 chr3 58196639 . C T 64 . DP=11;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,7,0,4;MQ=60;FQ=67;PV4=1,1,1,1 GT:PL:GQ 0/1:94,0,142:97 chr3 58270963 . T C 13.2 . DP=31;VDB=0.0325;AF1=0.5;AC1=1;DP4=15,6,4,6;MQ=60;FQ=16.1;PV4=0.13,9.2e-15,1,0.32 GT:PL:GQ 0/1:43,0,255:46 chr3 58355273 . G C 3.01 . DP=10;VDB=0.0287;AF1=0.4997;AC1=1;DP4=1,5,0,4;MQ=60;FQ=4.77;PV4=1,0.00014,1,0.12 GT:PL:GQ 0/1:30,0,142:28 chr3 58368449 . T C 133 . DP=32;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,10,9,6;MQ=60;FQ=136;PV4=0.29,7.1e-08,1,1 GT:PL:GQ 0/1:163,0,255:99 chr3 58376992 . G A 138 . DP=103;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,32,20,26;MQ=60;FQ=141;PV4=0.84,6.6e-30,1,1 GT:PL:GQ 0/1:168,0,255:99 chr3 58382846 . C T 168 . DP=46;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,8,13,12;MQ=60;FQ=171;PV4=0.77,1.4e-13,1,0.37 GT:PL:GQ 0/1:198,0,255:99 chr3 58384995 . G A 174 . DP=103;VDB=0.0392;AF1=0.5;AC1=1;DP4=29,18,27,27;MQ=60;FQ=177;PV4=0.32,1.9e-30,1,0.18 GT:PL:GQ 0/1:204,0,255:99 chr3 58385194 . T C 74 . DP=14;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,5,1,8;MQ=60;FQ=72.9;PV4=1,3e-07,1,1 GT:PL:GQ 0/1:104,0,102:99 chr3 58389462 . A G 66 . DP=36;VDB=0.0298;AF1=0.5;AC1=1;DP4=16,2,14,4;MQ=59;FQ=69;PV4=0.66,2.5e-16,1,0.48 GT:PL:GQ 0/1:96,0,218:99 chr3 58394850 . C T 45 . DP=15;VDB=0.0014;AF1=0.5;AC1=1;DP4=1,5,0,8;MQ=60;FQ=48;PV4=0.43,2.3e-09,1,0.23 GT:PL:GQ 0/1:75,0,145:78 chr3 58395490 . GTTTTTTT GTTTTTTTT 9.04 . INDEL;DP=42;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,18,2,15;MQ=59;FQ=5.82;PV4=0.59,0.22,0.15,0.25 GT:PL:GQ 0/1:46,0,40:43 chr3 58395863 . A G 75 . DP=68;VDB=0.0271;AF1=0.5;AC1=1;DP4=7,28,4,28;MQ=60;FQ=78;PV4=0.52,2.9e-27,0.15,0.32 GT:PL:GQ 0/1:105,0,255:99 chr3 58395891 . C G 225 . DP=48;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,17,4,20;MQ=60;FQ=225;PV4=0.49,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 58398447 . C T 30 . DP=5;VDB=0.0027;AF1=0.5008;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-4.12;PV4=1,0.021,1,0.21 GT:PL:GQ 0/1:60,0,25:28 chr3 58398466 . C T 20 . DP=6;VDB=0.0027;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=22.4;PV4=1,7.3e-07,1,1 GT:PL:GQ 0/1:50,0,58:52 chr3 58409126 . C A 133 . DP=26;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,2,9,1;MQ=59;FQ=136;PV4=1,0.16,0.11,1 GT:PL:GQ 0/1:163,0,232:99 chr3 58409173 . A T 107 . DP=54;VDB=0.0345;AF1=0.5;AC1=1;DP4=22,3,22,4;MQ=60;FQ=110;PV4=1,2.3e-16,1,1 GT:PL:GQ 0/1:137,0,248:99 chr3 58409300 . GTT GTTTT 217 . INDEL;DP=110;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,29,23,34;MQ=60;FQ=217;PV4=1,1,0.11,0.21 GT:PL:GQ 0/1:255,0,255:99 chr3 58410554 . C T 157 . DP=42;VDB=0.0216;AF1=0.5;AC1=1;DP4=13,3,24,1;MQ=60;FQ=160;PV4=0.28,0.11,1,0.41 GT:PL:GQ 0/1:187,0,209:99 chr3 58415590 . C A 162 . DP=110;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,25,25,30;MQ=60;FQ=165;PV4=0.56,1.3e-33,1,1 GT:PL:GQ 0/1:192,0,255:99 chr3 58416538 . T C 98 . DP=33;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,2;MQ=60;FQ=-72 GT:PL:GQ 1/1:131,45,0:87 chr3 58417416 . C T 151 . DP=18;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,2,5,3;MQ=60;FQ=153;PV4=0.62,1,1,1 GT:PL:GQ 0/1:181,0,187:99 chr3 58516383 . G A 177 . DP=85;VDB=0.0345;AF1=1;AC1=2;DP4=0,2,21,57;MQ=59;FQ=-207;PV4=1,7.1e-05,1,0.15 GT:PL:GQ 1/1:210,180,0:99 chr3 58520306 . G C 222 . DP=89;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,43,44;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 58520859 . A G 174 . DP=17;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,16;MQ=60;FQ=-75 GT:PL:GQ 1/1:207,48,0:93 chr3 58575110 . A G 168 . DP=28;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,22;MQ=60;FQ=-108 GT:PL:GQ 1/1:201,81,0:99 chr3 58625975 . C G 157 . DP=38;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,10,27;MQ=60;FQ=-138 GT:PL:GQ 1/1:190,111,0:99 chr3 58631180 . Gaa GAaa 17.3 . INDEL;DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:56,6,0:10 chr3 58635197 . G A 207 . DP=14;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,4,8;MQ=60;FQ=-63 GT:PL:GQ 1/1:240,36,0:69 chr3 58635278 . A G 8.64 . DP=10;VDB=0.0096;AF1=0.5;AC1=1;DP4=2,6,1,1;MQ=60;FQ=11.3;PV4=1,1,1,1 GT:PL:GQ 0/1:38,0,174:40 chr3 59996927 . T C 74 . DP=11;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:107,33,0:63 chr3 59996969 . C T 92 . DP=35;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,33,0;MQ=60;FQ=-126 GT:PL:GQ 1/1:125,99,0:99 chr3 59999690 . T C 222 . DP=41;VDB=0.0345;AF1=1;AC1=2;DP4=0,1,29,10;MQ=59;FQ=-118;PV4=0.27,1,1,1 GT:PL:GQ 1/1:255,91,0:99 chr3 62189189 . G A 161 . DP=58;VDB=0.0298;AF1=0.5;AC1=1;DP4=19,13,13,11;MQ=60;FQ=164;PV4=0.79,1.6e-13,0.13,1 GT:PL:GQ 0/1:191,0,255:99 chr3 62189437 . G C 84 . DP=34;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,10,8,8;MQ=59;FQ=87;PV4=0.73,7.3e-13,0.16,1 GT:PL:GQ 0/1:114,0,255:99 chr3 62229553 . C T 150 . DP=80;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,35,38;MQ=60;FQ=-247 GT:PL:GQ 1/1:183,220,0:99 chr3 62267213 . CTTTTTTTTTTTTT CTTTTTTTTTTTTTTTTTTTTTTTT 31.4 . INDEL;DP=17;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,1,2;MQ=26;FQ=-43.5 GT:PL:GQ 1/1:71,9,0:16 chr3 62317005 . A G 172 . DP=73;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,9,29,13;MQ=60;FQ=175;PV4=1,6.8e-25,0.2,0.42 GT:PL:GQ 0/1:202,0,255:99 chr3 62385280 . AGTG AGTGTG 217 . INDEL;DP=18;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,7,1,8;MQ=60;FQ=147;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,182:99 chr3 62431415 . T C 183 . DP=12;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:216,33,0:63 chr3 62452895 . C T 82 . DP=22;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,3,7,3;MQ=60;FQ=85;PV4=1,8.8e-08,1,1 GT:PL:GQ 0/1:112,0,224:99 chr3 62498378 . G A 213 . DP=37;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,33,1;MQ=60;FQ=-129 GT:PL:GQ 1/1:246,102,0:99 chr3 62556622 . A G 220 . DP=159;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,72,79;MQ=59;FQ=-282;PV4=1,2.5e-08,1,0.42 GT:PL:GQ 1/1:253,255,0:99 chr3 62612013 . C T 70.3 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:103,15,0:27 chr3 62612139 . A T 222 . DP=158;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,121,26;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 62612145 . C A 219 . DP=162;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,126,30;MQ=59;FQ=-282 GT:PL:GQ 1/1:252,255,0:99 chr3 62612280 . C T 222 . DP=134;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,122;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 62612294 . T C 196 . DP=106;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,101;MQ=59;FQ=-282 GT:PL:GQ 1/1:229,255,0:99 chr3 62612309 . G C 222 . DP=78;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,2,75;MQ=60;FQ=-259 GT:PL:GQ 1/1:255,232,0:99 chr3 62612342 . T C 84 . DP=34;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,29;MQ=60;FQ=-114 GT:PL:GQ 1/1:117,87,0:99 chr3 62631553 . G T 147 . DP=32;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,27;MQ=60;FQ=-117 GT:PL:GQ 1/1:180,90,0:99 chr3 62636826 . C T 116 . DP=25;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,2,21;MQ=60;FQ=-96 GT:PL:GQ 1/1:149,69,0:99 chr3 62647928 . A G 78 . DP=11;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:111,33,0:63 chr3 62739092 . A G 112 . DP=12;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,10,2;MQ=58;FQ=-63 GT:PL:GQ 1/1:145,36,0:69 chr3 63437977 . C G 12.3 . DP=5;VDB=0.0002;AF1=0.5006;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-3.59;PV4=1,2.6e-05,1,1 GT:PL:GQ 0/1:42,0,26:29 chr3 63466382 . G T 69 . DP=9;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:102,24,0:45 chr3 63649492 . A G 63 . DP=15;VDB=0.0392;AF1=0.5;AC1=1;DP4=4,3,4,4;MQ=60;FQ=66;PV4=1,1.1e-08,1,1 GT:PL:GQ 0/1:93,0,178:96 chr3 63661117 . G T 141 . DP=21;VDB=0.0033;AF1=0.5;AC1=1;DP4=5,0,14,0;MQ=60;FQ=63;PV4=1,0.22,1,1 GT:PL:GQ 0/1:171,0,90:93 chr3 63821914 . C G 139 . DP=29;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,25,4;MQ=60;FQ=-114 GT:PL:GQ 1/1:172,87,0:99 chr3 63898324 . C A 25.8 . DP=2;VDB=0.0090;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:57,6,0:10 chr3 63982082 . G A 225 . DP=76;VDB=0.0398;AF1=0.5;AC1=1;DP4=16,19,19,20;MQ=60;FQ=225;PV4=0.82,0.073,1,0.051 GT:PL:GQ 0/1:255,0,255:99 chr3 63999322 . G A 187 . DP=31;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,15,2,12;MQ=60;FQ=190;PV4=1,1,1,1 GT:PL:GQ 0/1:217,0,229:99 chr3 64009508 . T C 166 . DP=41;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,26,14;MQ=60;FQ=-147 GT:PL:GQ 1/1:199,120,0:99 chr3 64133350 . A G 222 . DP=48;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,14,33;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr3 64145759 . T C 225 . DP=82;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,27,14,18;MQ=60;FQ=225;PV4=1,1,1,0.36 GT:PL:GQ 0/1:255,0,255:99 chr3 64145913 . T A 17.1 . DP=8;VDB=0.0188;AF1=0.5;AC1=1;DP4=0,6,0,2;MQ=60;FQ=20.1;PV4=1,1,1,1 GT:PL:GQ 0/1:47,0,129:50 chr3 64184676 . G A 117 . DP=21;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,1,20;MQ=60;FQ=-90 GT:PL:GQ 1/1:150,63,0:99 chr3 64431140 . C A 33 . DP=3;VDB=0.0204;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:65,9,0:16 chr3 64518994 . T C 194 . DP=80;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,20,55;MQ=60;FQ=-253 GT:PL:GQ 1/1:227,226,0:99 chr3 64519034 . T C 46 . DP=29;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,18,2,7;MQ=60;FQ=49;PV4=0.1,4.6e-14,1,0.17 GT:PL:GQ 0/1:76,0,180:79 chr3 64526651 . Ccaatgtgcaatgtgcaatgtgcaat Ccaatgtgcaatgtgcaat 23.5 . INDEL;DP=11;VDB=0.0053;AF1=0.5;AC1=1;DP4=7,0,4,0;MQ=51;FQ=26.5;PV4=1,0.067,0,1 GT:PL:GQ 0/1:61,0,233:64 chr3 64526717 . G C 190 . DP=37;VDB=0.0244;AF1=0.5;AC1=1;DP4=17,3,14,3;MQ=56;FQ=193;PV4=1,1,0.0014,0.39 GT:PL:GQ 0/1:220,0,255:99 chr3 64526942 . A C 114 . DP=32;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,4,10,9;MQ=58;FQ=117;PV4=0.48,3.3e-09,0.13,0.087 GT:PL:GQ 0/1:144,0,218:99 chr3 64527321 . T C 82 . DP=18;VDB=0.0025;AF1=0.5;AC1=1;DP4=1,11,0,6;MQ=60;FQ=85;PV4=1,1,1,0.22 GT:PL:GQ 0/1:112,0,186:99 chr3 64527465 . C T,A 60 . DP=56;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,46,10;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,243,162,255,0,231:99 chr3 64619109 . C A 142 . DP=31;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,1,14,0;MQ=59;FQ=145;PV4=1,0.42,1,1 GT:PL:GQ 0/1:172,0,202:99 chr3 64633504 . A T 31 . DP=11;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,0,5,0;MQ=60;FQ=34;PV4=1,4e-05,1,1 GT:PL:GQ 0/1:61,0,121:64 chr3 64640206 . TAAAA TAAA 214 . INDEL;DP=67;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,40,24;MQ=60;FQ=-228 GT:PL:GQ 1/1:255,193,0:99 chr3 64667059 . G T 121 . DP=75;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,30,11,19;MQ=60;FQ=124;PV4=0.81,4.8e-24,1,0.36 GT:PL:GQ 0/1:151,0,255:99 chr3 65350694 . A G 98 . DP=84;VDB=0.0400;AF1=0.5;AC1=1;DP4=27,21,10,25;MQ=60;FQ=101;PV4=0.015,1.4e-39,1,1 GT:PL:GQ 0/1:128,0,255:99 chr3 65353448 . G A 222 . DP=32;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,11,20;MQ=60;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr3 65416648 . C A 89 . DP=28;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,28;MQ=60;FQ=-111 GT:PL:GQ 1/1:122,84,0:99 chr3 65438893 . C A 123 . DP=76;VDB=0.0322;AF1=0.5;AC1=1;DP4=21,16,27,10;MQ=60;FQ=126;PV4=0.22,6e-23,1,1 GT:PL:GQ 0/1:153,0,255:99 chr3 65607637 . A G 94.1 . DP=8;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,1;MQ=60;FQ=-48 GT:PL:GQ 1/1:127,21,0:39 chr3 66287056 . G A 146 . DP=64;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,14,12,16;MQ=60;FQ=149;PV4=0.21,1.5e-22,1,1 GT:PL:GQ 0/1:176,0,255:99 chr3 66354911 . G C 225 . DP=125;VDB=0.0400;AF1=0.5;AC1=1;DP4=36,28,37,23;MQ=60;FQ=225;PV4=0.59,1,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr3 66396845 . G A 37 . DP=7;VDB=0.0305;AF1=0.5;AC1=1;DP4=0,2,2,2;MQ=60;FQ=25.9;PV4=0.47,0.0018,1,1 GT:PL:GQ 0/1:67,0,53:56 chr3 66406410 . A G 123 . DP=9;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,0,5,1;MQ=60;FQ=48;PV4=1,0.3,1,0.45 GT:PL:GQ 0/1:153,0,75:78 chr3 66406415 . A G 127 . DP=9;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,0,5,1;MQ=60;FQ=49;PV4=1,1,1,0.42 GT:PL:GQ 0/1:157,0,76:79 chr3 66406605 . C T 101 . DP=13;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,6,0,7;MQ=60;FQ=93.6;PV4=1,0.24,1,1 GT:PL:GQ 0/1:131,0,121:99 chr3 66419760 . A T 30 . DP=7;VDB=0.0000;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=23.5;PV4=1,0.00039,1,1 GT:PL:GQ 0/1:60,0,51:54 chr3 66419956 . C T 225 . DP=73;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,28,15,11;MQ=60;FQ=225;PV4=0.15,0.21,0.093,1 GT:PL:GQ 0/1:255,0,255:99 chr3 66420862 . C T 108 . DP=16;VDB=0.0003;AF1=0.5;AC1=1;DP4=8,0,8,0;MQ=60;FQ=102;PV4=1,1,1,0.17 GT:PL:GQ 0/1:138,0,130:99 chr3 66428234 . C A 54 . DP=33;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,18,1,9;MQ=60;FQ=57;PV4=1,2.9e-09,1,0.26 GT:PL:GQ 0/1:84,0,255:87 chr3 66430870 . G A 152 . DP=90;VDB=0.0392;AF1=0.5;AC1=1;DP4=27,17,33,11;MQ=60;FQ=155;PV4=0.25,8.3e-31,1,1 GT:PL:GQ 0/1:182,0,255:99 chr3 66432680 . A G 140 . DP=45;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,7,15,6;MQ=59;FQ=143;PV4=1,3e-18,1,0.13 GT:PL:GQ 0/1:170,0,255:99 chr3 66433676 . A G 138 . DP=70;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,19,12,27;MQ=60;FQ=141;PV4=0.62,5.3e-25,0.19,1 GT:PL:GQ 0/1:168,0,255:99 chr3 66448431 . G A 96 . DP=15;VDB=0.0011;AF1=0.5;AC1=1;DP4=8,0,7,0;MQ=60;FQ=99;PV4=1,0.038,1,0.29 GT:PL:GQ 0/1:126,0,149:99 chr3 66463251 . G A 110 . DP=6;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,6,0;MQ=56;FQ=-45 GT:PL:GQ 1/1:143,18,0:33 chr3 66465259 . T C 67 . DP=3;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:99,9,0:16 chr3 67048762 . T C 156 . DP=11;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,4;MQ=60;FQ=-60 GT:PL:GQ 1/1:189,33,0:63 chr3 67411166 . A G 68 . DP=30;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,15,1,10;MQ=59;FQ=71;PV4=0.63,1e-08,1,1 GT:PL:GQ 0/1:98,0,255:99 chr3 67426281 . T C 132 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,7,6,8;MQ=60;FQ=135;PV4=1,1.6e-07,1,0.33 GT:PL:GQ 0/1:162,0,254:99 chr3 67459492 . G T 98 . DP=40;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,3,33;MQ=59;FQ=-135 GT:PL:GQ 1/1:131,108,0:99 chr3 67548852 . G A 15.1 . DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:47,9,0:14 chr3 67660040 . G A 149 . DP=17;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,11;MQ=59;FQ=-78 GT:PL:GQ 1/1:182,51,0:99 chr3 67660049 . A G 166 . DP=20;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,5,13;MQ=59;FQ=-81 GT:PL:GQ 1/1:199,54,0:99 chr3 68606548 . G T 175 . DP=87;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,64;MQ=60;FQ=-271 GT:PL:GQ 1/1:208,244,0:99 chr3 68782213 . A G 197 . DP=44;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,21,21;MQ=60;FQ=-153 GT:PL:GQ 1/1:230,126,0:99 chr3 68788363 . G T 222 . DP=97;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,18,74;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 68788465 . G T 68.1 . DP=7;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:101,18,0:33 chr3 68801921 . T C 6.02 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr3 69036707 . G A 176 . DP=69;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,46;MQ=60;FQ=-214 GT:PL:GQ 1/1:209,187,0:99 chr3 69037633 . G C 166 . DP=16;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,8;MQ=58;FQ=-72 GT:PL:GQ 1/1:199,45,0:87 chr3 69038217 . A G 222 . DP=32;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,25;MQ=60;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr3 69053447 . A T 42 . DP=12;VDB=0.0216;AF1=0.5;AC1=1;DP4=4,0,6,1;MQ=60;FQ=44.7;PV4=1,2.3e-05,1,1 GT:PL:GQ 0/1:72,0,83:75 chr3 69054266 . AT ATT 132 . INDEL;DP=39;VDB=0.0118;AF1=0.5;AC1=1;DP4=20,2,17,0;MQ=58;FQ=135;PV4=0.5,1,1,0.42 GT:PL:GQ 0/1:170,0,199:99 chr3 69054341 . T C 115 . DP=89;VDB=0.0392;AF1=0.5;AC1=1;DP4=29,15,32,9;MQ=59;FQ=118;PV4=0.24,3.7e-36,1,1 GT:PL:GQ 0/1:145,0,255:99 chr3 69058783 . C T 23 . DP=27;VDB=0.0271;AF1=0.5;AC1=1;DP4=15,2,9,0;MQ=60;FQ=26;PV4=0.53,6.8e-12,1,1 GT:PL:GQ 0/1:53,0,233:56 chr3 69073410 . G A 75 . DP=9;VDB=0.0380;AF1=0.5001;AC1=1;DP4=1,1,1,4;MQ=60;FQ=6.99;PV4=1,1,1,1 GT:PL:GQ 0/1:105,0,33:36 chr3 69082657 . T C 222 . DP=73;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,65,6;MQ=60;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr3 69082873 . G T 77 . DP=27;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,8,1,17;MQ=59;FQ=80;PV4=1,8e-19,0.26,1 GT:PL:GQ 0/1:107,0,130:99 chr3 69084062 . G C 35 . DP=14;VDB=0.0014;AF1=0.5;AC1=1;DP4=6,1,7,0;MQ=58;FQ=38;PV4=1,2.8e-09,0.17,1 GT:PL:GQ 0/1:65,0,162:68 chr3 69084161 . C A 89 . DP=61;VDB=0.0365;AF1=0.5;AC1=1;DP4=19,7,21,11;MQ=60;FQ=92;PV4=0.58,1.8e-27,1,1 GT:PL:GQ 0/1:119,0,255:99 chr3 69091640 . C T 222 . DP=18;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,14,2;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr3 69093598 . T C 19 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:51,9,0:15 chr3 69096614 . G A 222 . DP=111;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,64,38;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 69104695 . T A 62.1 . DP=8;VDB=0.0305;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:95,21,0:39 chr3 69104752 . C T 64 . DP=3;VDB=0.0141;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:96,9,0:16 chr3 69106304 . C T,A 39.1 . DP=23;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,1;MQ=49;FQ=-45 GT:PL:GQ 1/1:72,18,0,68,6,65:33 chr3 69106305 . C G 66.1 . DP=23;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,1;MQ=49;FQ=-48 GT:PL:GQ 1/1:99,21,0:39 chr3 69129191 . T C 7.8 . DP=7;VDB=0.0086;AF1=0.5;AC1=1;DP4=4,1,1,1;MQ=60;FQ=10.4;PV4=1,0.0046,1,1 GT:PL:GQ 0/1:37,0,129:39 chr3 69225588 . T G 222 . DP=17;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,11,5;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr3 69225875 . T A 39 . DP=3;VDB=0.0189;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:71,9,0:16 chr3 69229976 . G C 191 . DP=12;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:224,36,0:69 chr3 69230026 . T C 195 . DP=31;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,26,5;MQ=59;FQ=-120 GT:PL:GQ 1/1:228,93,0:99 chr3 69230061 . G A 222 . DP=49;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,32,14;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr3 69230801 . G A 201 . DP=26;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,6,20;MQ=60;FQ=-105 GT:PL:GQ 1/1:234,78,0:99 chr3 69244162 . G A 222 . DP=33;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,29,4;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr3 69245454 . T C 222 . DP=78;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,34,42;MQ=60;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr3 69246152 . A G 182 . DP=119;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,51,67;MQ=60;FQ=-282 GT:PL:GQ 1/1:215,255,0:99 chr3 69246274 . A G 109 . DP=55;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,46;MQ=60;FQ=-181 GT:PL:GQ 1/1:142,154,0:99 chr3 69265291 . T C 65.5 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,4,0;MQ=54;FQ=-39 GT:PL:GQ 1/1:98,12,0:21 chr3 69265304 . caaaaaaaa cAaaaaaaaa 8.17 . INDEL;DP=14;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,14,0;MQ=58;FQ=-76.5 GT:PL:GQ 1/1:48,42,0:46 chr3 69265371 . G C 222 . DP=119;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,97,19;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 69267578 . A T 79 . DP=3;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-36 GT:PL:GQ 1/1:111,9,0:16 chr3 69271206 . T C 181 . DP=34;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,9,24;MQ=60;FQ=-126 GT:PL:GQ 1/1:214,99,0:99 chr3 69273656 . G T 135 . DP=50;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,46,4;MQ=60;FQ=-178 GT:PL:GQ 1/1:168,151,0:99 chr3 69351460 . AAGAG AAG 184 . INDEL;DP=91;VDB=0.0322;AF1=0.5;AC1=1;DP4=32,13,33,11;MQ=59;FQ=187;PV4=0.81,0.012,1,1 GT:PL:GQ 0/1:222,0,231:99 chr3 69362706 . C T 222 . DP=45;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,30;MQ=59;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr3 70014447 . T C 23 . DP=16;VDB=0.0019;AF1=0.5;AC1=1;DP4=1,7,1,7;MQ=60;FQ=26;PV4=1,7.4e-11,1,1 GT:PL:GQ 0/1:53,0,166:56 chr3 71007361 . G T,A 162 . DP=24;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,12,3;MQ=57;FQ=-69 GT:PL:GQ 1/1:195,42,0,195,30,192:81 chr3 71015021 . G T 30.3 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:63,15,0:27 chr3 71019750 . T C 37.8 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:69,6,0:10 chr3 71161817 . C T 225 . DP=42;VDB=0.0384;AF1=0.5;AC1=1;DP4=9,12,5,15;MQ=59;FQ=225;PV4=0.33,0.26,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 71247304 . A G 110 . DP=161;VDB=0.0392;AF1=0.5;AC1=1;DP4=44,46,38,31;MQ=60;FQ=113;PV4=0.52,1.3e-58,0.43,1 GT:PL:GQ 0/1:140,0,255:99 chr3 71247576 . A T 35.5 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:68,12,0:21 chr3 71745577 . C T 158 . DP=60;VDB=0.0380;AF1=0.5;AC1=1;DP4=24,9,14,12;MQ=60;FQ=161;PV4=0.17,4.4e-16,0.13,0.36 GT:PL:GQ 0/1:188,0,255:99 chr3 72495777 . C G 201 . DP=72;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,37,26;MQ=58;FQ=-217 GT:PL:GQ 1/1:234,190,0:99 chr3 72495945 . A G 199 . DP=49;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,34;MQ=59;FQ=-165 GT:PL:GQ 1/1:232,138,0:99 chr3 72799703 . C T 160 . DP=107;VDB=0.0322;AF1=0.5;AC1=1;DP4=36,26,19,26;MQ=60;FQ=163;PV4=0.12,1.9e-28,0.048,1 GT:PL:GQ 0/1:190,0,255:99 chr3 72895345 . G T 68 . DP=13;VDB=0.0241;AF1=0.5;AC1=1;DP4=4,4,2,3;MQ=56;FQ=71;PV4=1,0.12,0.37,0.25 GT:PL:GQ 0/1:98,0,191:99 chr3 72957734 . CAGTGTTTA CAGTGTTTAAGTGTTTA 113 . INDEL;DP=67;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,20,4,12;MQ=52;FQ=116;PV4=0.35,1,0,1 GT:PL:GQ 0/1:151,0,255:99 chr3 72971341 . C T 16.1 . DP=131;VDB=0.0345;AF1=0.5;AC1=1;DP4=48,24,25,13;MQ=60;FQ=19.1;PV4=1,1.9e-51,0.32,1 GT:PL:GQ 0/1:46,0,255:49 chr3 73004157 . T G 47 . DP=22;VDB=0.0140;AF1=0.5;AC1=1;DP4=10,1,9,1;MQ=60;FQ=50;PV4=1,6.2e-11,1,1 GT:PL:GQ 0/1:77,0,190:80 chr3 73004580 . T A 8.66 . DP=3;VDB=0.0186;AF1=0.5025;AC1=1;DP4=0,1,0,2;MQ=52;FQ=-7.83;PV4=1,0.056,1,0.18 GT:PL:GQ 0/1:38,0,20:24 chr3 73016974 . A G 81 . DP=14;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,14;MQ=60;FQ=-69 GT:PL:GQ 1/1:114,42,0:81 chr3 73024350 . C A 94 . DP=78;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,32,7,30;MQ=59;FQ=97;PV4=1,1.3e-34,0.26,1 GT:PL:GQ 0/1:124,0,255:99 chr3 73046508 . G C 10.4 . DP=17;VDB=0.0254;AF1=0.5;AC1=1;DP4=10,3,3,1;MQ=60;FQ=13.2;PV4=1,0.0032,1,1 GT:PL:GQ 0/1:40,0,205:42 chr3 73096591 . AT ATAATT 213 . INDEL;DP=17;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,3,0,13;MQ=51;FQ=63.5;PV4=0.24,1,0.24,1 GT:PL:GQ 0/1:251,0,98:99 chr3 73111368 . T C 3.01 . DP=27;VDB=0.0365;AF1=0.4997;AC1=1;DP4=9,2,5,1;MQ=60;FQ=4.77;PV4=1,7.3e-07,1,0.069 GT:PL:GQ 0/1:30,0,218:28 chr3 73111809 . A G 225 . DP=102;VDB=0.0398;AF1=0.5;AC1=1;DP4=29,20,26,25;MQ=60;FQ=225;PV4=0.43,0.032,0.082,1 GT:PL:GQ 0/1:255,0,255:99 chr3 73111973 . A G 225 . DP=136;VDB=0.0399;AF1=0.5;AC1=1;DP4=31,35,35,34;MQ=60;FQ=225;PV4=0.73,0.3,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 73111998 . C T 136 . DP=145;VDB=0.0380;AF1=0.5;AC1=1;DP4=34,38,35,36;MQ=60;FQ=139;PV4=0.87,1.9e-51,0.16,0.46 GT:PL:GQ 0/1:166,0,255:99 chr3 73112919 . TA TAA 217 . INDEL;DP=40;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,4,13,15;MQ=60;FQ=142;PV4=0.31,1,1,1 GT:PL:GQ 0/1:255,0,177:99 chr3 73434086 . A G 193 . DP=29;VDB=0.0359;AF1=0.5;AC1=1;DP4=5,7,3,12;MQ=59;FQ=193;PV4=0.4,0.33,0.19,0.25 GT:PL:GQ 0/1:223,0,223:99 chr3 73437112 . A G 133 . DP=29;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,8,6,10;MQ=59;FQ=136;PV4=1,1.6e-15,1,1 GT:PL:GQ 0/1:163,0,253:99 chr3 73453201 . C T 43 . DP=15;VDB=0.0025;AF1=0.5;AC1=1;DP4=7,0,8,0;MQ=60;FQ=46;PV4=1,2.6e-06,1,1 GT:PL:GQ 0/1:73,0,128:76 chr3 73453325 . C T 225 . DP=68;VDB=0.0400;AF1=0.5;AC1=1;DP4=18,11,17,20;MQ=60;FQ=225;PV4=0.22,0.017,0.19,0.16 GT:PL:GQ 0/1:255,0,255:99 chr3 73651383 . A T 222 . DP=31;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,25,5;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr3 73651469 . C T 202 . DP=113;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,73,37;MQ=60;FQ=-282 GT:PL:GQ 1/1:235,255,0:99 chr3 73651621 . TAAAAAAAAAAA TAAAAAAAAAA,TAAAAAAAAA 52.5 . INDEL;DP=85;VDB=0.0380;AF1=1;AC1=2;DP4=0,2,13,57;MQ=60;FQ=-206;PV4=1,1,1,1 GT:PL:GQ 1/1:93,171,0,88,140,82:99 chr3 73673578 . G C 23 . DP=3;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:55,9,0:15 chr3 74315580 . C G 145 . DP=82;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,70,9;MQ=60;FQ=-265 GT:PL:GQ 1/1:178,238,0:99 chr3 74344134 . A G 68 . DP=10;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:101,24,0:45 chr3 74413676 . T C 173 . DP=138;VDB=0.0392;AF1=0.5;AC1=1;DP4=29,37,38,31;MQ=59;FQ=176;PV4=0.23,2.3e-49,1,1 GT:PL:GQ 0/1:203,0,255:99 chr3 74474166 . T C 33 . DP=11;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=60;FQ=36;PV4=1,4.1e-05,1,1 GT:PL:GQ 0/1:63,0,106:66 chr3 75386380 . T G 139 . DP=17;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,7,10;MQ=41;FQ=-78 GT:PL:GQ 1/1:172,51,0:99 chr3 75679937 . G A 6.98 . DP=54;VDB=0.0099;AF1=0.4999;AC1=1;DP4=31,1,21,0;MQ=25;FQ=9.53;PV4=1,5.5e-21,0.0067,1 GT:PL:GQ 0/1:36,0,160:37 chr3 75679973 . A G 160 . DP=98;VDB=0.0392;AF1=0.5;AC1=1;DP4=41,13,33,10;MQ=25;FQ=163;PV4=1,0.43,0.00024,0.2 GT:PL:GQ 0/1:190,0,255:99 chr3 75786230 . C T 10.4 . DP=6;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,3,0;MQ=18;FQ=-36 GT:PL:GQ 1/1:42,9,0:13 chr3 75786440 . C T 128 . DP=16;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,8,7;MQ=28;FQ=-72 GT:PL:GQ 1/1:161,45,0:87 chr3 75786753 . C T 222 . DP=17;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,13,4;MQ=39;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr3 75786832 . C T 222 . DP=18;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,4,13;MQ=43;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr3 75790972 . C T 30.5 . DP=4;VDB=0.0017;AF1=1;AC1=2;DP4=0,0,4,0;MQ=22;FQ=-39 GT:PL:GQ 1/1:63,12,0:21 chr3 75986663 . C A 22 . DP=11;VDB=0.0003;AF1=0.5;AC1=1;DP4=4,0,7,0;MQ=44;FQ=25;PV4=1,1.8e-09,0.0016,0.26 GT:PL:GQ 0/1:52,0,93:55 chr3 75986686 . A G 221 . DP=43;VDB=0.0011;AF1=0.5;AC1=1;DP4=13,2,21,7;MQ=47;FQ=162;PV4=0.46,0.31,7.2e-06,1 GT:PL:GQ 0/1:251,0,189:99 chr3 75986719 . G C 225 . DP=89;VDB=0.0099;AF1=0.5;AC1=1;DP4=25,3,44,16;MQ=48;FQ=164;PV4=0.1,0.42,1.9e-08,0.094 GT:PL:GQ 0/1:255,0,191:99 chr3 75986794 . G A 123 . DP=151;VDB=0.0140;AF1=0.5;AC1=1;DP4=29,35,27,53;MQ=51;FQ=126;PV4=0.17,1.1e-47,8.1e-16,1 GT:PL:GQ 0/1:153,0,255:99 chr3 75986813 . T A 96 . DP=117;VDB=0.0025;AF1=0.5;AC1=1;DP4=19,37,10,48;MQ=52;FQ=99;PV4=0.053,3e-55,2.9e-15,0.025 GT:PL:GQ 0/1:126,0,255:99 chr3 75986833 . C T 49 . DP=95;VDB=0.0006;AF1=0.5;AC1=1;DP4=17,38,4,32;MQ=53;FQ=52;PV4=0.041,7.5e-32,2.9e-18,0.0016 GT:PL:GQ 0/1:79,0,255:82 chr3 75986874 . G C 226 . DP=37;VDB=0.0392;AF1=0.5718;AC1=1;DP4=0,7,3,25;MQ=54;FQ=-21;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,6:9 chr3 75986920 . A G 8.64 . DP=16;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,9,0,7;MQ=47;FQ=11.3;PV4=1,1.5e-15,3.5e-11,1 GT:PL:GQ 0/1:38,0,161:40 chr3 75986924 . T G 11.3 . DP=16;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,9,0,7;MQ=47;FQ=14.2;PV4=1,4.1e-13,3.5e-11,1 GT:PL:GQ 0/1:41,0,158:43 chr3 75986950 . A G 4.77 . DP=10;VDB=0.0002;AF1=0.4999;AC1=1;DP4=0,4,0,6;MQ=41;FQ=6.99;PV4=1,2.9e-07,3.2e-06,1 GT:PL:GQ 0/1:33,0,94:33 chr3 77681580 . A G 44 . DP=17;VDB=0.0118;AF1=0.5;AC1=1;DP4=9,1,4,2;MQ=60;FQ=47;PV4=0.52,1.2e-06,1,1 GT:PL:GQ 0/1:74,0,184:77 chr3 78663956 . G A 174 . DP=24;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,7,12;MQ=60;FQ=-84 GT:PL:GQ 1/1:207,57,0:99 chr3 78664093 . C T 18.8 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,0,2;MQ=47;FQ=-33 GT:PL:GQ 1/1:50,6,0:10 chr3 78666765 . T C 222 . DP=28;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,24,3;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr3 78676391 . C T 47 . DP=17;VDB=0.0006;AF1=0.5;AC1=1;DP4=6,2,8,1;MQ=57;FQ=50;PV4=0.58,4.7e-08,1,0.16 GT:PL:GQ 0/1:77,0,169:80 chr3 78676422 . G A 142 . DP=31;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,23,6;MQ=58;FQ=-114 GT:PL:GQ 1/1:175,87,0:99 chr3 78676467 . A G 222 . DP=50;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,39,9;MQ=59;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr3 78711350 . T C 211 . DP=11;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,2,9;MQ=60;FQ=-60 GT:PL:GQ 1/1:244,33,0:63 chr3 78717508 . G A 128 . DP=25;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,24;MQ=60;FQ=-102 GT:PL:GQ 1/1:161,75,0:99 chr3 78737962 . G A 222 . DP=66;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,15,50;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr3 78796078 . C A 127 . DP=44;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,37;MQ=59;FQ=-150 GT:PL:GQ 1/1:160,123,0:99 chr3 81586139 . G A 82 . DP=32;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,9,8,6;MQ=59;FQ=85;PV4=0.73,1.3e-13,1,1 GT:PL:GQ 0/1:112,0,255:99 chr3 81643167 . T C 185 . DP=68;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,16,48;MQ=60;FQ=-220 GT:PL:GQ 1/1:218,193,0:99 chr3 81698130 . T C 113 . DP=21;VDB=0.0343;AF1=0.5;AC1=1;DP4=1,6,6,8;MQ=60;FQ=112;PV4=0.34,3.5e-08,1,0.11 GT:PL:GQ 0/1:143,0,142:99 chr3 81792592 . T C 115 . DP=18;VDB=0.0025;AF1=0.5;AC1=1;DP4=6,0,11,0;MQ=60;FQ=76;PV4=1,0.32,1,1 GT:PL:GQ 0/1:145,0,103:99 chr3 81810702 . AGG AGGG 115 . INDEL;DP=7;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,1,5;MQ=56;FQ=-52.5 GT:PL:GQ 1/1:155,18,0:33 chr3 85434950 . CTTTTTTTTTTTTTTT CTTTTTTTTTTTTTTTTTT 3.66 . INDEL;DP=4;VDB=0.0254;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:40,6,0:4 chr3 86010600 . G A 135 . DP=46;VDB=0.0164;AF1=0.5;AC1=1;DP4=26,1,18,0;MQ=59;FQ=138;PV4=1,1,1,1 GT:PL:GQ 0/1:165,0,217:99 chr3 87100309 . T C 151 . DP=139;VDB=0.0345;AF1=0.5;AC1=1;DP4=49,24,47,18;MQ=42;FQ=154;PV4=0.58,3.7e-42,0.046,1 GT:PL:GQ 0/1:181,0,255:99 chr3 87100434 . G A 77 . DP=61;VDB=0.0053;AF1=0.5;AC1=1;DP4=3,25,3,28;MQ=30;FQ=80;PV4=1,2.6e-27,0.055,1 GT:PL:GQ 0/1:107,0,213:99 chr3 87100447 . G A 128 . DP=40;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,18,1,18;MQ=32;FQ=131;PV4=1,0.025,1,0.4 GT:PL:GQ 0/1:158,0,169:99 chr3 87100893 . G A 108 . DP=28;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,9,4,12;MQ=58;FQ=111;PV4=1,6.6e-15,1,0.19 GT:PL:GQ 0/1:138,0,226:99 chr3 87100951 . AGG AG 6.55 . INDEL;DP=7;VDB=0.0003;AF1=0.5;AC1=1;DP4=1,4,0,2;MQ=57;FQ=9.05;PV4=1,3e-05,0.059,1 GT:PL:GQ 0/1:43,0,144:44 chr3 87295049 . T C 71 . DP=15;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,5,1,8;MQ=60;FQ=74;PV4=1,1.4e-06,1,1 GT:PL:GQ 0/1:101,0,131:99 chr3 88188420 . G A 76 . DP=13;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:109,39,0:75 chr3 88189341 . T C 222 . DP=77;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,34,42;MQ=60;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr3 88190768 . C A 222 . DP=55;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,36,19;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr3 88190809 . C T 222 . DP=51;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,21,30;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr3 88199179 . T C 191 . DP=48;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,41,5;MQ=59;FQ=-165 GT:PL:GQ 1/1:224,138,0:99 chr3 88199185 . TCCCCCCC TCCCCCCCC 53.5 . INDEL;DP=57;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,39,9;MQ=59;FQ=-179 GT:PL:GQ 1/1:94,144,0:99 chr3 88199298 . T C 222 . DP=84;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,32,47;MQ=59;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr3 89456555 . T A 187 . DP=64;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,13,48;MQ=60;FQ=-211 GT:PL:GQ 1/1:220,184,0:99 chr3 89480265 . A G 167 . DP=35;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,30,4;MQ=60;FQ=-129 GT:PL:GQ 1/1:200,102,0:99 chr3 89498619 . A G 131 . DP=11;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:164,21,0:39 chr3 89521509 . C A 58 . DP=18;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,17,0;MQ=60;FQ=-78 GT:PL:GQ 1/1:91,51,0:98 chr3 89521602 . T TC 52.5 . INDEL;DP=68;VDB=0.0322;AF1=1;AC1=2;DP4=0,1,44,23;MQ=59;FQ=-221;PV4=0.35,1,1,0.22 GT:PL:GQ 1/1:93,186,0:99 chr3 89521693 . T C 222 . DP=85;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,32,49;MQ=56;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr3 89521725 . T C 222 . DP=74;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,23,46;MQ=55;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr3 89528461 . A T 137 . DP=22;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,18,2;MQ=59;FQ=-87 GT:PL:GQ 1/1:170,60,0:99 chr3 89528477 . G A 222 . DP=28;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,24,4;MQ=59;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr3 90264768 . A G 222 . DP=32;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,17,12;MQ=59;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr3 93605126 . A G 166 . DP=16;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:199,42,0:81 chr3 93780109 . G C 222 . DP=63;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,14,47;MQ=60;FQ=-211 GT:PL:GQ 1/1:255,184,0:99 chr3 93813171 . C G 222 . DP=86;VDB=0.0298;AF1=1;AC1=2;DP4=0,1,20,61;MQ=59;FQ=-245;PV4=1,2.7e-06,1,1 GT:PL:GQ 1/1:255,218,0:99 chr3 94225786 . G T 77 . DP=9;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,9,0;MQ=28;FQ=-54 GT:PL:GQ 1/1:110,27,0:51 chr3 97365038 . G A 80 . DP=37;VDB=0.0271;AF1=0.5;AC1=1;DP4=13,9,8,5;MQ=60;FQ=83;PV4=1,4e-10,1,1 GT:PL:GQ 0/1:110,0,255:99 chr3 97365074 . A G 217 . DP=33;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,9,6,7;MQ=59;FQ=219;PV4=0.73,1,1,1 GT:PL:GQ 0/1:247,0,255:99 chr3 97367230 . C CA 217 . INDEL;DP=36;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,13,3,12;MQ=59;FQ=193;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,228:99 chr3 97467361 . Atctctctctctctctctctct Atctctctctctctctct 217 . INDEL;DP=13;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,0,10,1;MQ=60;FQ=37.5;PV4=1,0.2,1,1 GT:PL:GQ 0/1:255,0,72:75 chr3 97486862 . C G 49 . DP=10;VDB=0.0053;AF1=0.5;AC1=1;DP4=3,0,6,0;MQ=60;FQ=40.7;PV4=1,0.00063,1,1 GT:PL:GQ 0/1:79,0,68:71 chr3 97499441 . T C 32 . DP=21;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,2,11,0;MQ=60;FQ=35;PV4=0.21,7.9e-14,1,0.36 GT:PL:GQ 0/1:62,0,201:65 chr3 97510748 . ttattatat ttat 103 . INDEL;DP=13;VDB=0.0042;AF1=0.5;AC1=1;DP4=1,5,0,6;MQ=54;FQ=106;PV4=1,0.0079,0.025,0.29 GT:PL:GQ 0/1:141,0,246:99 chr3 97593485 . C T 111 . DP=73;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,26,13,11;MQ=60;FQ=114;PV4=0.62,5.3e-23,1,1 GT:PL:GQ 0/1:141,0,255:99 chr3 97596373 . A C 117 . DP=43;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,10,6,20;MQ=59;FQ=120;PV4=0.49,1.1e-18,0.23,1 GT:PL:GQ 0/1:147,0,251:99 chr3 97607290 . G A 225 . DP=49;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,10,12,11;MQ=60;FQ=225;PV4=0.77,1,1,0.17 GT:PL:GQ 0/1:255,0,255:99 chr3 97660084 . C T 225 . DP=36;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,6,13,7;MQ=59;FQ=218;PV4=1,0.32,1,1 GT:PL:GQ 0/1:255,0,245:99 chr3 97660198 . A G 153 . DP=14;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,6,2,6;MQ=58;FQ=80;PV4=0.47,1,0.2,1 GT:PL:GQ 0/1:183,0,107:99 chr3 97666183 . TCTCCTCCTC TCTCCTC 217 . INDEL;DP=34;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,5,9,3;MQ=57;FQ=217;PV4=1,2.8e-06,0.3,0.49 GT:PL:GQ 0/1:255,0,255:99 chr3 97673268 . A C 222 . DP=21;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,6;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr3 97680356 . C T 101 . DP=70;VDB=0.0164;AF1=0.5;AC1=1;DP4=26,10,30,4;MQ=60;FQ=104;PV4=0.14,3.1e-24,1,1 GT:PL:GQ 0/1:131,0,255:99 chr3 97726747 . T A 59 . DP=43;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,20,0,20;MQ=59;FQ=62;PV4=0.49,1.2e-18,0.15,1 GT:PL:GQ 0/1:89,0,240:92 chr3 97727727 . G C 59 . DP=28;VDB=0.0140;AF1=0.5;AC1=1;DP4=12,0,16,0;MQ=60;FQ=62;PV4=1,1e-14,1,1 GT:PL:GQ 0/1:89,0,160:92 chr3 97727753 . G A 64 . DP=50;VDB=0.0400;AF1=0.5;AC1=1;DP4=21,2,25,0;MQ=60;FQ=67;PV4=0.22,4.9e-16,0.17,1 GT:PL:GQ 0/1:94,0,234:97 chr3 97753931 . T C 51 . DP=16;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,7,0,9;MQ=60;FQ=54;PV4=1,1.1e-06,1,1 GT:PL:GQ 0/1:81,0,128:84 chr3 97805954 . T C 43 . DP=10;VDB=0.0033;AF1=0.5;AC1=1;DP4=4,0,5,0;MQ=60;FQ=46;PV4=1,0.00038,1,1 GT:PL:GQ 0/1:73,0,95:76 chr3 97806616 . G A 132 . DP=55;VDB=0.0373;AF1=0.5;AC1=1;DP4=12,18,11,13;MQ=60;FQ=135;PV4=0.78,3.6e-22,1,0.38 GT:PL:GQ 0/1:162,0,255:99 chr3 97806999 . T C 222 . DP=16;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,13;MQ=58;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr3 98073313 . A G 191 . DP=71;VDB=0.0365;AF1=1;AC1=2;DP4=1,1,41,24;MQ=60;FQ=-172;PV4=1,3.5e-06,1,1 GT:PL:GQ 1/1:224,145,0:99 chr3 98109489 . C T 166 . DP=55;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,42,11;MQ=60;FQ=-187 GT:PL:GQ 1/1:199,160,0:99 chr3 98109640 . G A 222 . DP=141;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,86,52;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 98188250 . T G 12.3 . DP=6;VDB=0.0011;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=57;FQ=13.1;PV4=1,0.0029,0.27,1 GT:PL:GQ 0/1:42,0,44:43 chr3 98188580 . C T 173 . DP=169;VDB=0.0380;AF1=0.5;AC1=1;DP4=57,26,58,25;MQ=49;FQ=176;PV4=1,8.5e-42,1,0.42 GT:PL:GQ 0/1:203,0,255:99 chr3 98250862 . C A 93 . DP=36;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,3,18,2;MQ=60;FQ=96;PV4=0.64,1.1e-17,1,0.19 GT:PL:GQ 0/1:123,0,244:99 chr3 98252027 . G A 6.95 . DP=3;VDB=0.0098;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:38,9,0:10 chr3 98304467 . T C 57 . DP=35;VDB=0.0393;AF1=0.5;AC1=1;DP4=10,14,2,8;MQ=60;FQ=60;PV4=0.43,0.00058,1,0.44 GT:PL:GQ 0/1:87,0,255:90 chr3 98489686 . A G 132 . DP=73;VDB=0.0373;AF1=0.5;AC1=1;DP4=29,11,24,6;MQ=60;FQ=135;PV4=0.58,8.6e-22,1,1 GT:PL:GQ 0/1:162,0,255:99 chr3 98489915 . C G 81 . DP=30;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,2,9,6;MQ=58;FQ=84;PV4=0.21,3.8e-18,1,0.25 GT:PL:GQ 0/1:111,0,229:99 chr3 98491619 . G T 76 . DP=61;VDB=0.0244;AF1=0.5;AC1=1;DP4=30,2,28,1;MQ=60;FQ=79;PV4=1,1.6e-27,1,1 GT:PL:GQ 0/1:106,0,244:99 chr3 98501128 . A G 138 . DP=39;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,10,6,13;MQ=59;FQ=141;PV4=0.51,3.3e-12,1,1 GT:PL:GQ 0/1:168,0,255:99 chr3 98503683 . C T 225 . DP=48;VDB=0.0298;AF1=0.5;AC1=1;DP4=22,3,17,5;MQ=60;FQ=225;PV4=0.45,0.21,1,0.32 GT:PL:GQ 0/1:255,0,255:99 chr3 98503941 . G A 80.3 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:113,15,0:27 chr3 98512610 . A G 225 . DP=37;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,8,7,17;MQ=60;FQ=180;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,207:99 chr3 98518339 . C T 94 . DP=69;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,26,10,23;MQ=58;FQ=97;PV4=0.79,7.7e-25,0.3,1 GT:PL:GQ 0/1:124,0,255:99 chr3 98520602 . A G 45 . DP=6;VDB=0.0007;AF1=0.5;AC1=1;DP4=0,2,1,3;MQ=58;FQ=15.1;PV4=1,0.087,0.27,1 GT:PL:GQ 0/1:75,0,42:45 chr3 98536571 . T C 36 . DP=24;VDB=0.0244;AF1=0.5;AC1=1;DP4=10,1,12,0;MQ=60;FQ=39;PV4=0.48,2.2e-13,1,1 GT:PL:GQ 0/1:66,0,177:69 chr3 98540982 . A G 136 . DP=14;VDB=0.0373;AF1=0.5;AC1=1;DP4=4,1,8,1;MQ=60;FQ=93;PV4=1,0.021,1,1 GT:PL:GQ 0/1:166,0,120:99 chr3 98541012 . G A 149 . DP=15;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,3;MQ=60;FQ=-72 GT:PL:GQ 1/1:182,45,0:87 chr3 98541116 . G A 103 . DP=74;VDB=0.0322;AF1=0.5;AC1=1;DP4=25,10,24,12;MQ=60;FQ=106;PV4=0.8,5.8e-30,1,0.17 GT:PL:GQ 0/1:133,0,255:99 chr3 98541633 . G A 73 . DP=63;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,27,10,14;MQ=60;FQ=76;PV4=0.41,4.4e-33,1,0.34 GT:PL:GQ 0/1:103,0,255:99 chr3 98544353 . G A 222 . DP=14;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,10;MQ=58;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr3 99514536 . C T 85 . DP=54;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,11,14,10;MQ=60;FQ=88;PV4=1,2e-17,1,1 GT:PL:GQ 0/1:115,0,255:99 chr3 99536937 . C T 76 . DP=22;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,10,1,9;MQ=60;FQ=79;PV4=1,3e-09,1,0.12 GT:PL:GQ 0/1:106,0,215:99 chr3 99904783 . G A 21.8 . DP=2;VDB=0.0182;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:53,6,0:10 chr3 100015146 . G T 81 . DP=12;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,2,9;MQ=60;FQ=-60 GT:PL:GQ 1/1:114,33,0:63 chr3 100029173 . A G 112 . DP=17;VDB=0.0099;AF1=0.5;AC1=1;DP4=8,1,8,0;MQ=60;FQ=115;PV4=1,1,1,0.37 GT:PL:GQ 0/1:142,0,160:99 chr3 100034849 . A T 30.3 . DP=6;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:63,15,0:27 chr3 100067468 . C T 8.64 . DP=8;VDB=0.0014;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=11.3;PV4=1,0.00012,1,1 GT:PL:GQ 0/1:38,0,99:40 chr3 100086861 . T C 131 . DP=21;VDB=0.0066;AF1=0.5;AC1=1;DP4=8,0,12,0;MQ=60;FQ=113;PV4=1,0.03,1,1 GT:PL:GQ 0/1:161,0,140:99 chr3 100092528 . T TGCA 175 . INDEL;DP=46;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,19,1,15;MQ=57;FQ=178;PV4=1,4.4e-13,0.0085,1 GT:PL:GQ 0/1:213,0,255:99 chr3 100170628 . A G 6.98 . DP=103;VDB=0.0298;AF1=0.4999;AC1=1;DP4=37,41,11,13;MQ=50;FQ=9.53;PV4=1,2.1e-31,1.6e-08,1 GT:PL:GQ 0/1:36,0,255:37 chr3 100170825 . G A 192 . DP=23;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,9,4,8;MQ=59;FQ=172;PV4=0.64,0.24,1,1 GT:PL:GQ 0/1:222,0,199:99 chr3 100174722 . G A 177 . DP=65;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,14,15,16;MQ=60;FQ=180;PV4=0.8,1.1e-15,1,1 GT:PL:GQ 0/1:207,0,255:99 chr3 100277476 . G C 222 . DP=14;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,9;MQ=60;FQ=-69 GT:PL:GQ 1/1:255,42,0:81 chr3 100277514 . G A 69.3 . DP=5;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:102,15,0:27 chr3 100287764 . T C 222 . DP=72;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,23,46;MQ=60;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr3 100295733 . A G 181 . DP=77;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,44,22;MQ=56;FQ=-226 GT:PL:GQ 1/1:214,199,0:99 chr3 100295909 . ATTGT ATTGTCTTTGT 208 . INDEL;DP=21;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,0,18;MQ=40;FQ=-88.5 GT:PL:GQ 1/1:249,54,0:99 chr3 100352223 . T C 225 . DP=65;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,18,18,10;MQ=59;FQ=225;PV4=0.21,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 100354683 . G A 82 . DP=27;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,25;MQ=58;FQ=-102 GT:PL:GQ 1/1:115,75,0:99 chr3 100368425 . A G 6.98 . DP=5;VDB=0.0010;AF1=0.4999;AC1=1;DP4=2,0,3,0;MQ=60;FQ=9.47;PV4=1,0.00072,1,0.36 GT:PL:GQ 0/1:36,0,54:37 chr3 100368546 . A G 41 . DP=35;VDB=0.0190;AF1=0.5;AC1=1;DP4=14,6,12,3;MQ=60;FQ=44;PV4=0.7,1.8e-16,1,0.45 GT:PL:GQ 0/1:71,0,255:74 chr3 100368692 . A G 222 . DP=22;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,17;MQ=59;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr3 100374073 . T C 57 . DP=47;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,22,0,23;MQ=60;FQ=60;PV4=0.49,1.5e-23,1,0.11 GT:PL:GQ 0/1:87,0,244:90 chr3 100374121 . C T 63 . DP=12;VDB=0.0049;AF1=0.5;AC1=1;DP4=0,8,0,4;MQ=60;FQ=66;PV4=1,1,1,1 GT:PL:GQ 0/1:93,0,152:96 chr3 100374740 . T C 225 . DP=61;VDB=0.0400;AF1=0.5;AC1=1;DP4=28,9,18,5;MQ=60;FQ=225;PV4=1,0.34,1,0.42 GT:PL:GQ 0/1:255,0,255:99 chr3 100374910 . G A 123 . DP=53;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,22,5,19;MQ=60;FQ=126;PV4=1,2.6e-15,1,0.33 GT:PL:GQ 0/1:153,0,255:99 chr3 100455609 . TG T 108 . INDEL;DP=17;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,10,1,6;MQ=59;FQ=111;PV4=0.41,6e-05,1,1 GT:PL:GQ 0/1:146,0,161:99 chr3 100467018 . T C 155 . DP=63;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,51,10;MQ=60;FQ=-211 GT:PL:GQ 1/1:188,184,0:99 chr3 100473505 . C T 225 . DP=75;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,22,11,23;MQ=60;FQ=225;PV4=0.62,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 100511379 . G A 11.1 . DP=2;VDB=0.0176;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr3 100511428 . G A 12.3 . DP=25;VDB=0.0244;AF1=0.5;AC1=1;DP4=9,1,11,0;MQ=60;FQ=15.1;PV4=0.48,6.1e-11,1,1 GT:PL:GQ 0/1:42,0,174:44 chr3 100511446 . T A 67 . DP=35;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,2,19,0;MQ=60;FQ=70;PV4=0.16,2.6e-10,1,0.31 GT:PL:GQ 0/1:97,0,201:99 chr3 100523771 . A C 53 . DP=17;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,6,1,10;MQ=59;FQ=56;PV4=1,7.7e-09,0.24,1 GT:PL:GQ 0/1:83,0,110:86 chr3 100530791 . T C 43 . DP=5;VDB=0.0098;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=28;PV4=1,0.29,1,1 GT:PL:GQ 0/1:73,0,55:58 chr3 100532510 . T A 178 . DP=59;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,11,18,11;MQ=59;FQ=181;PV4=1,3e-17,1,0.46 GT:PL:GQ 0/1:208,0,255:99 chr3 100534633 . A G 26 . DP=9;VDB=0.0081;AF1=0.5;AC1=1;DP4=3,0,6,0;MQ=60;FQ=29;PV4=1,1.6e-05,1,1 GT:PL:GQ 0/1:56,0,77:59 chr3 100534705 . G A 218 . DP=23;VDB=0.0066;AF1=0.5;AC1=1;DP4=5,5,6,6;MQ=60;FQ=199;PV4=1,0.19,1,1 GT:PL:GQ 0/1:248,0,226:99 chr3 100534714 . T C 225 . DP=30;VDB=0.0244;AF1=0.5;AC1=1;DP4=8,6,8,6;MQ=60;FQ=224;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,253:99 chr3 100536252 . G A 38 . DP=35;VDB=0.0325;AF1=0.5;AC1=1;DP4=12,10,4,7;MQ=60;FQ=41;PV4=0.46,7.9e-15,1,0.37 GT:PL:GQ 0/1:68,0,255:71 chr3 100539865 . G A 74 . DP=114;VDB=0.0345;AF1=0.5;AC1=1;DP4=28,39,25,20;MQ=60;FQ=77;PV4=0.18,6.1e-56,0.11,1 GT:PL:GQ 0/1:104,0,255:99 chr3 100543871 . C T 69 . DP=27;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,12,5,8;MQ=59;FQ=72;PV4=0.21,1.5e-11,0.15,1 GT:PL:GQ 0/1:99,0,219:99 chr3 100544756 . C T 142 . DP=22;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,9,0,13;MQ=60;FQ=116;PV4=1,1,1,1 GT:PL:GQ 0/1:172,0,143:99 chr3 100548484 . T C 225 . DP=78;VDB=0.0398;AF1=0.5;AC1=1;DP4=19,27,13,15;MQ=60;FQ=225;PV4=0.81,1,1,0.17 GT:PL:GQ 0/1:255,0,255:99 chr3 100551061 . C T 110 . DP=47;VDB=0.0271;AF1=0.5;AC1=1;DP4=24,4,12,6;MQ=59;FQ=113;PV4=0.16,3.4e-14,0.11,0.13 GT:PL:GQ 0/1:140,0,255:99 chr3 100617680 . C T 140 . DP=52;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,7,15,7;MQ=60;FQ=143;PV4=0.75,1.4e-12,1,1 GT:PL:GQ 0/1:170,0,255:99 chr3 100621426 . C A 219 . DP=38;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,24,11;MQ=59;FQ=-132 GT:PL:GQ 1/1:252,105,0:99 chr3 100712249 . T C 140 . DP=17;VDB=0.0325;AF1=0.5;AC1=1;DP4=4,4,4,4;MQ=59;FQ=143;PV4=1,0.079,1,0.33 GT:PL:GQ 0/1:170,0,187:99 chr3 100946742 . T G 169 . DP=41;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,17,23;MQ=60;FQ=-147 GT:PL:GQ 1/1:202,120,0:99 chr3 100949842 . G A 138 . DP=31;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,26,4;MQ=58;FQ=-117 GT:PL:GQ 1/1:171,90,0:99 chr3 100963154 . G A 222 . DP=92;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,46,36;MQ=59;FQ=-248;PV4=1,1,1,1 GT:PL:GQ 1/1:255,221,0:99 chr3 100976755 . G C 82 . DP=19;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,1,18;MQ=60;FQ=-84 GT:PL:GQ 1/1:115,57,0:99 chr3 100992385 . C T 161 . DP=20;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,17,0;MQ=60;FQ=-78 GT:PL:GQ 1/1:194,51,0:99 chr3 100994497 . C T 222 . DP=35;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,15;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr3 101038339 . G A 180 . DP=19;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,17,0;MQ=60;FQ=-78 GT:PL:GQ 1/1:213,51,0:99 chr3 101039107 . A C 54.1 . DP=7;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,5,2;MQ=60;FQ=-48 GT:PL:GQ 1/1:87,21,0:39 chr3 101066717 . T A 40.5 . DP=13;VDB=0.0271;AF1=0.8294;AC1=1;DP4=1,0,11,1;MQ=60;FQ=-26;PV4=1,9.4e-07,1,0.23 GT:PL:GQ 0/1:69,0,1:4 chr3 101085683 . TAAAAAAAA TAAA 32.4 . INDEL;DP=7;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,3;MQ=29;FQ=-43.5 GT:PL:GQ 1/1:72,9,0:16 chr3 101136402 . G C 99 . DP=42;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,37,0;MQ=60;FQ=-138 GT:PL:GQ 1/1:132,111,0:99 chr3 101304414 . G T 68.1 . DP=7;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:101,21,0:39 chr3 101389864 . T C 138 . DP=40;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,36,3;MQ=59;FQ=-144 GT:PL:GQ 1/1:171,117,0:99 chr3 101404813 . A G 202 . DP=51;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,20,29;MQ=59;FQ=-175 GT:PL:GQ 1/1:235,148,0:99 chr3 101443461 . T C 56.5 . DP=4;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:89,12,0:21 chr3 101484335 . G A 144 . DP=80;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,45;MQ=60;FQ=-241 GT:PL:GQ 1/1:177,214,0:99 chr3 101540387 . T G 94 . DP=67;VDB=0.0190;AF1=0.5;AC1=1;DP4=26,12,27,2;MQ=60;FQ=97;PV4=0.016,4.7e-21,0.13,1 GT:PL:GQ 0/1:124,0,255:99 chr3 105238890 . cttttttttttt ctttttttttt,ctttttttt,cttttttttt 9.92 . INDEL;DP=104;VDB=0.0392;AF1=1;AC1=2;DP4=1,0,65,26;MQ=60;FQ=-275;PV4=1,1,1,0.26 GT:PL:GQ 1/1:50,240,0,27,186,21,49,208,20,43:69 chr3 105243389 . T C 195 . DP=26;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,8,17;MQ=60;FQ=-102 GT:PL:GQ 1/1:228,75,0:99 chr3 105252377 . G C 51 . DP=14;VDB=0.0014;AF1=0.5;AC1=1;DP4=10,0,4,0;MQ=60;FQ=54;PV4=1,1,1,1 GT:PL:GQ 0/1:81,0,161:84 chr3 105260518 . G A 175 . DP=82;VDB=0.0399;AF1=0.5;AC1=1;DP4=23,18,17,21;MQ=59;FQ=178;PV4=0.37,3.2e-21,1,0.47 GT:PL:GQ 0/1:205,0,255:99 chr3 105260596 . T C 221 . DP=62;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,15,46;MQ=60;FQ=-211 GT:PL:GQ 1/1:254,184,0:99 chr3 105404031 . T C 35.8 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:67,6,0:10 chr3 105412286 . CT CTTT 195 . INDEL;DP=6;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-52.5 GT:PL:GQ 1/1:235,18,0:33 chr3 105422844 . C T 170 . DP=24;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,16,6;MQ=60;FQ=-93 GT:PL:GQ 1/1:203,66,0:99 chr3 105438806 . G A 204 . DP=16;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,13,1;MQ=60;FQ=-69 GT:PL:GQ 1/1:237,42,0:81 chr3 105452751 . C T 167 . DP=13;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:200,39,0:75 chr3 105453034 . A G 83 . DP=14;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,1,13;MQ=60;FQ=-69 GT:PL:GQ 1/1:116,42,0:81 chr3 105455955 . T C 73 . DP=10;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,8,1;MQ=57;FQ=-54 GT:PL:GQ 1/1:106,27,0:51 chr3 105464766 . G A 133 . DP=48;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,5,18,9;MQ=60;FQ=136;PV4=0.75,6.1e-18,1,0.36 GT:PL:GQ 0/1:163,0,255:99 chr3 105495432 . G T 215 . DP=34;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,32;MQ=59;FQ=-126 GT:PL:GQ 1/1:248,99,0:99 chr3 105588069 . G A 222 . DP=23;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,16,6;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr3 107096547 . G A 132 . DP=96;VDB=0.0345;AF1=0.5;AC1=1;DP4=39,16,28,11;MQ=60;FQ=135;PV4=1,1.6e-27,0.4,1 GT:PL:GQ 0/1:162,0,255:99 chr3 107451907 . C T 222 . DP=79;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,26,49;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr3 107510197 . ATAAGT ATAAGTAAGT 217 . INDEL;DP=44;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,17,1,18;MQ=57;FQ=217;PV4=1,1,0.0094,1 GT:PL:GQ 0/1:255,0,255:99 chr3 107519843 . T C 184 . DP=25;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,24,0;MQ=60;FQ=-99 GT:PL:GQ 1/1:217,72,0:99 chr3 107524097 . A C 45 . DP=7;VDB=0.0008;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=44.5;PV4=1,0.14,1,0.41 GT:PL:GQ 0/1:75,0,74:74 chr3 107769230 . C T 46.5 . DP=4;VDB=0.0082;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:79,12,0:21 chr3 107769319 . A C 25 . DP=14;VDB=0.0359;AF1=0.5;AC1=1;DP4=3,3,3,3;MQ=60;FQ=28;PV4=1,6.4e-07,1,1 GT:PL:GQ 0/1:55,0,158:58 chr3 107776511 . C T 38.8 . DP=2;VDB=0.0165;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:70,6,0:10 chr3 107882643 . G A 129 . DP=7;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:162,21,0:39 chr3 107884211 . T C 62 . DP=14;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:95,39,0:75 chr3 107937231 . T C 29 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:61,9,0:16 chr3 107937286 . A G 66 . DP=21;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:99,36,0:69 chr3 107937571 . G A 28.5 . DP=4;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:61,12,0:21 chr3 107938240 . G C 95 . DP=24;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,22,1;MQ=60;FQ=-96 GT:PL:GQ 1/1:128,69,0:99 chr3 108070544 . A G 12.3 . DP=14;VDB=0.0011;AF1=0.5;AC1=1;DP4=8,0,6,0;MQ=58;FQ=15.1;PV4=1,2.6e-07,0.13,1 GT:PL:GQ 0/1:42,0,146:44 chr3 108081277 . C A 222 . DP=74;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,25,48;MQ=60;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr3 108095365 . G A 222 . DP=38;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,19,19;MQ=59;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr3 108096098 . C G 208 . DP=80;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,63,11;MQ=60;FQ=-250 GT:PL:GQ 1/1:241,223,0:99 chr3 108096227 . G C 222 . DP=108;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,27,75;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 108107704 . C T 37.8 . DP=2;VDB=0.0178;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:69,6,0:10 chr3 108110570 . G A 114 . DP=39;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,33,4;MQ=60;FQ=-138 GT:PL:GQ 1/1:147,111,0:99 chr3 108135606 . TAAAAAAAAAAA TAAAAAAAAA,TAAAAAAAA 44.5 . INDEL;DP=25;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,24,1;MQ=54;FQ=-101 GT:PL:GQ 1/1:85,66,0,55,2,46:99 chr3 108140148 . A G 12.2 . DP=3;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:44,9,0:14 chr3 108156633 . AAAAGAAAGA AAAAGAAAGAAAGA 50 . INDEL;DP=7;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,4;MQ=39;FQ=-46.5 GT:PL:GQ 1/1:90,12,0:21 chr3 108158574 . C T 221 . DP=57;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,37,19;MQ=60;FQ=-196 GT:PL:GQ 1/1:254,169,0:99 chr3 108172817 . C T 208 . DP=89;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,57,30;MQ=60;FQ=-282 GT:PL:GQ 1/1:241,255,0:99 chr3 108174537 . T C 121 . DP=62;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,16,10;MQ=60;FQ=-105 GT:PL:GQ 1/1:154,78,0:99 chr3 108179219 . CAAAAAAAAAAAAA CAAAAAAAAAAAA,CAAAAAAAAA 20.5 . INDEL;DP=25;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,9,10;MQ=60;FQ=-88.5 GT:PL:GQ 1/1:61,54,0,46,26,43:71 chr3 108188993 . G A 222 . DP=65;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,14,50;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr3 108189627 . C T 222 . DP=92;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,34,53;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 108189750 . C T 146 . DP=23;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,19;MQ=60;FQ=-96 GT:PL:GQ 1/1:179,69,0:99 chr3 108211869 . aaaggaaggaaggaaggaaggaaggaa aAAGGaaggaaggaaggaaggaaggaaggaa 214 . INDEL;DP=27;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,26,0;MQ=58;FQ=-113 GT:PL:GQ 1/1:255,78,0:99 chr3 108216807 . G A 108 . DP=29;VDB=0.0118;AF1=1;AC1=2;DP4=1,0,25,1;MQ=58;FQ=-79;PV4=1,0.00011,1,1 GT:PL:GQ 1/1:141,52,0:99 chr3 108229171 . T C 98.3 . DP=5;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:131,15,0:27 chr3 108279551 . C A 39 . DP=28;VDB=0.0398;AF1=0.5;AC1=1;DP4=11,5,10,1;MQ=59;FQ=42;PV4=0.35,5e-10,0.12,1 GT:PL:GQ 0/1:69,0,255:72 chr3 108284214 . G A 107 . DP=18;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,3,4,2;MQ=60;FQ=110;PV4=1,0.17,1,1 GT:PL:GQ 0/1:137,0,244:99 chr3 108295067 . G A 52 . DP=17;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,1,8,0;MQ=60;FQ=55;PV4=1,5.8e-05,1,0.24 GT:PL:GQ 0/1:82,0,169:85 chr3 108298108 . T C 50 . DP=17;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,2,6,1;MQ=59;FQ=53;PV4=1,1e-06,1,1 GT:PL:GQ 0/1:80,0,202:83 chr3 108324365 . C T 69 . DP=8;VDB=0.0027;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=69.5;PV4=1,0.44,1,1 GT:PL:GQ 0/1:99,0,100:99 chr3 108327050 . T TAAC 214 . INDEL;DP=12;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,0,10;MQ=53;FQ=-64.5 GT:PL:GQ 1/1:255,30,0:57 chr3 108347811 . C A 86 . DP=14;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,1,7,3;MQ=60;FQ=33;PV4=1,2.2e-06,1,1 GT:PL:GQ 0/1:116,0,60:63 chr3 108355575 . CTTTTTTTTTTTT CTTTTTTTTTTT,CTTTTTTTTTT 24.5 . INDEL;DP=48;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,20,19;MQ=60;FQ=-136;PV4=1,0.42,1,1 GT:PL:GQ 1/1:65,101,0,65,99,62:99 chr3 108366978 . A G 196 . DP=25;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,9,3,8;MQ=60;FQ=199;PV4=1,1,1,1 GT:PL:GQ 0/1:226,0,236:99 chr3 108373022 . G A 153 . DP=109;VDB=0.0400;AF1=0.5;AC1=1;DP4=37,18,39,14;MQ=60;FQ=156;PV4=0.53,4.7e-44,1,0.2 GT:PL:GQ 0/1:183,0,255:99 chr3 108393134 . T C 77 . DP=34;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,12,0,19;MQ=60;FQ=80;PV4=0.17,2e-14,1,1 GT:PL:GQ 0/1:107,0,217:99 chr3 108394771 . G A 225 . DP=67;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,24,5,26;MQ=60;FQ=225;PV4=0.25,0.31,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 108403086 . T C 170 . DP=36;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,27,9;MQ=59;FQ=-135 GT:PL:GQ 1/1:203,108,0:99 chr3 108474524 . A C 130 . DP=43;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,8,19,5;MQ=60;FQ=133;PV4=0.098,4.2e-20,1,0.35 GT:PL:GQ 0/1:160,0,255:99 chr3 108475974 . G A 74 . DP=24;VDB=0.0398;AF1=0.5;AC1=1;DP4=1,12,3,8;MQ=47;FQ=77;PV4=0.3,1.1e-09,1,0.35 GT:PL:GQ 0/1:104,0,142:99 chr3 108475993 . GGGGGATTAGG GGGGGATTAGGGGATTAGG 89.5 . INDEL;DP=24;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,8,0,8;MQ=48;FQ=92.5;PV4=1,1,0.00018,1 GT:PL:GQ 0/1:127,0,255:99 chr3 108541761 . T C 160 . DP=34;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,7,8,10;MQ=59;FQ=163;PV4=0.73,6.2e-06,1,1 GT:PL:GQ 0/1:190,0,255:99 chr3 108541931 . CAT C 92.5 . INDEL;DP=4;VDB=0.0041;AF1=0.5;AC1=1;DP4=0,1,0,3;MQ=60;FQ=13.7;PV4=1,0.018,1,1 GT:PL:GQ 0/1:130,0,48:51 chr3 108557820 . T C 61 . DP=32;VDB=0.0216;AF1=0.5;AC1=1;DP4=13,8,7,4;MQ=59;FQ=64;PV4=1,5.1e-08,0.085,1 GT:PL:GQ 0/1:91,0,255:94 chr3 108565815 . T C 222 . DP=20;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,14,5;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr3 108567923 . G A 38.8 . DP=2;VDB=0.0171;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:70,6,0:10 chr3 108639270 . C T 93 . DP=25;VDB=0.0140;AF1=0.5;AC1=1;DP4=7,7,8,3;MQ=59;FQ=96;PV4=0.41,1.3e-05,1,1 GT:PL:GQ 0/1:123,0,250:99 chr3 108639384 . T C 129 . DP=20;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,10,1,7;MQ=60;FQ=132;PV4=1,0.44,1,1 GT:PL:GQ 0/1:159,0,225:99 chr3 108639423 . C T 147 . DP=11;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:180,30,0:57 chr3 108677910 . C T 8.64 . DP=11;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,3,4,1;MQ=58;FQ=11.3;PV4=0.55,9.7e-08,1,0.41 GT:PL:GQ 0/1:38,0,159:40 chr3 108678002 . G A 14.2 . DP=10;VDB=0.0138;AF1=0.5;AC1=1;DP4=1,3,1,3;MQ=57;FQ=17.1;PV4=1,5.8e-05,1,1 GT:PL:GQ 0/1:44,0,95:47 chr3 108682218 . A G 212 . DP=63;VDB=0.0345;AF1=0.5;AC1=1;DP4=27,13,18,4;MQ=60;FQ=215;PV4=0.37,0.11,1,1 GT:PL:GQ 0/1:242,0,255:99 chr3 108690221 . G A 225 . DP=106;VDB=0.0392;AF1=0.5;AC1=1;DP4=33,15,33,24;MQ=60;FQ=225;PV4=0.31,0.065,0.097,0.13 GT:PL:GQ 0/1:255,0,255:99 chr3 108698627 . G A 115 . DP=7;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:148,21,0:39 chr3 108703422 . A G 67 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:99,9,0:16 chr3 108703518 . G T 99 . DP=42;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,5,14,3;MQ=59;FQ=102;PV4=1,1.1e-19,0.041,0.27 GT:PL:GQ 0/1:129,0,255:99 chr3 108703548 . C T 145 . DP=55;VDB=0.0271;AF1=0.5;AC1=1;DP4=22,6,17,9;MQ=59;FQ=148;PV4=0.37,3.4e-23,0.07,1 GT:PL:GQ 0/1:175,0,255:99 chr3 108703702 . A T 145 . DP=32;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,14,0,16;MQ=58;FQ=148;PV4=0.48,1,0.036,1 GT:PL:GQ 0/1:175,0,232:99 chr3 108724202 . A G 78 . DP=44;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,19,1,22;MQ=60;FQ=81;PV4=1,4.7e-19,1,0.35 GT:PL:GQ 0/1:108,0,211:99 chr3 108725759 . C T 6.2 . DP=13;VDB=0.0140;AF1=0.4999;AC1=1;DP4=8,0,5,0;MQ=60;FQ=8.65;PV4=1,0.00033,1,1 GT:PL:GQ 0/1:35,0,135:36 chr3 108725848 . ATTGCTT ATT 217 . INDEL;DP=55;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,9,18,7;MQ=57;FQ=217;PV4=1,3.3e-05,0.0023,1 GT:PL:GQ 0/1:255,0,255:99 chr3 108725862 . T C 225 . DP=60;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,12,22,8;MQ=58;FQ=225;PV4=0.27,0.18,0.006,0.27 GT:PL:GQ 0/1:255,0,255:99 chr3 108725984 . G C 35 . DP=53;VDB=0.0359;AF1=0.5;AC1=1;DP4=11,23,0,17;MQ=58;FQ=38;PV4=0.0094,5.9e-23,0.0013,0.35 GT:PL:GQ 0/1:65,0,255:68 chr3 108754146 . G A 94 . DP=19;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,2,8,3;MQ=60;FQ=97;PV4=1,3.3e-08,1,1 GT:PL:GQ 0/1:124,0,173:99 chr3 108754214 . T C 225 . DP=34;VDB=0.0393;AF1=0.5;AC1=1;DP4=5,9,7,13;MQ=59;FQ=208;PV4=1,0.47,1,0.14 GT:PL:GQ 0/1:255,0,235:99 chr3 108754238 . A T 143 . DP=28;VDB=0.0244;AF1=1;AC1=2;DP4=0,1,7,20;MQ=59;FQ=-81;PV4=1,0.0088,0.43,0.31 GT:PL:GQ 1/1:176,54,0:99 chr3 108754260 . A G 225 . DP=25;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,9,3,11;MQ=59;FQ=130;PV4=0.61,1,1,1 GT:PL:GQ 0/1:255,0,157:99 chr3 108776343 . C T 222 . DP=31;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,26;MQ=58;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr3 108781952 . G T 100 . DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,7,16,9;MQ=59;FQ=103;PV4=0.76,3.8e-22,1,1 GT:PL:GQ 0/1:130,0,255:99 chr3 108788461 . T C 48 . DP=29;VDB=0.0164;AF1=0.5;AC1=1;DP4=18,1,7,3;MQ=60;FQ=51;PV4=0.1,1.4e-17,1,0.091 GT:PL:GQ 0/1:78,0,218:81 chr3 108788701 . CT CTT 15.6 . INDEL;DP=7;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,5,0,2;MQ=60;FQ=18.5;PV4=1,1,1,0.39 GT:PL:GQ 0/1:53,0,104:56 chr3 108855774 . A G 222 . DP=18;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,6,10;MQ=59;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr3 108855801 . T A 36 . DP=14;VDB=0.0393;AF1=0.5;AC1=1;DP4=1,8,0,5;MQ=58;FQ=39;PV4=1,9.1e-05,0.095,1 GT:PL:GQ 0/1:66,0,183:69 chr3 108867128 . A G 100 . DP=50;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,10,18,8;MQ=60;FQ=103;PV4=0.37,1.4e-20,1,1 GT:PL:GQ 0/1:130,0,255:99 chr3 109027157 . C T 222 . DP=92;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,11,79;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 109052732 . T C 225 . DP=76;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,21,18,21;MQ=60;FQ=225;PV4=0.64,0.3,1,0.36 GT:PL:GQ 0/1:255,0,255:99 chr3 109052934 . G A 28 . DP=5;VDB=0.0133;AF1=0.5;AC1=1;DP4=0,3,0,2;MQ=60;FQ=31;PV4=1,1,1,1 GT:PL:GQ 0/1:58,0,82:61 chr3 109178707 . C G 169 . DP=18;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,5,13;MQ=60;FQ=-81 GT:PL:GQ 1/1:202,54,0:99 chr3 109178758 . C T 179 . DP=11;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,1,9;MQ=60;FQ=-57 GT:PL:GQ 1/1:212,30,0:57 chr3 110611137 . G A 222 . DP=73;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,40,29;MQ=60;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr3 110792906 . G A 51.1 . DP=6;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:84,18,0:33 chr3 110793050 . G A 222 . DP=53;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,29,21;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr3 110866437 . G A 53 . DP=10;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:86,30,0:57 chr3 111260975 . C T 74 . DP=32;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,3,15,1;MQ=59;FQ=77;PV4=0.6,3.4e-13,1,1 GT:PL:GQ 0/1:104,0,241:99 chr3 111356083 . G C 129 . DP=37;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,27,8;MQ=59;FQ=-132 GT:PL:GQ 1/1:162,105,0:99 chr3 111394276 . G C 225 . DP=60;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,25,5,18;MQ=60;FQ=225;PV4=0.56,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 111432805 . G A 225 . DP=63;VDB=0.0271;AF1=0.5;AC1=1;DP4=24,10,21,7;MQ=60;FQ=225;PV4=0.78,0.084,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 111451383 . A C 93 . DP=58;VDB=0.0216;AF1=0.5;AC1=1;DP4=20,11,21,5;MQ=60;FQ=96;PV4=0.24,6.4e-29,1,0.22 GT:PL:GQ 0/1:123,0,255:99 chr3 111451603 . G C 115 . DP=34;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,15,3,14;MQ=60;FQ=118;PV4=1,3.3e-15,1,0.23 GT:PL:GQ 0/1:145,0,234:99 chr3 111564839 . A G 206 . DP=30;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,10,2,18;MQ=60;FQ=116;PV4=0.54,0.044,1,0.037 GT:PL:GQ 0/1:236,0,143:99 chr3 111604541 . G C 42 . DP=17;VDB=0.0053;AF1=0.5;AC1=1;DP4=2,4,0,11;MQ=60;FQ=45;PV4=0.11,9.5e-09,1,1 GT:PL:GQ 0/1:72,0,138:75 chr3 111637904 . G A 222 . DP=84;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,58,22;MQ=60;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr3 111651285 . G A 225 . DP=62;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,31,6,21;MQ=60;FQ=225;PV4=0.31,0.23,1,0.12 GT:PL:GQ 0/1:255,0,255:99 chr3 111658486 . T G 167 . DP=60;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,14,46;MQ=60;FQ=-208 GT:PL:GQ 1/1:200,181,0:99 chr3 111658514 . A G 44 . DP=38;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,19,2,13;MQ=59;FQ=47;PV4=1,6.2e-10,1,1 GT:PL:GQ 0/1:74,0,255:77 chr3 111659377 . T C 179 . DP=58;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,28,26;MQ=60;FQ=-190 GT:PL:GQ 1/1:212,163,0:99 chr3 111677505 . T C 152 . DP=45;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,4,16,10;MQ=60;FQ=155;PV4=0.33,2.6e-18,1,0.24 GT:PL:GQ 0/1:182,0,255:99 chr3 111677526 . G A 176 . DP=56;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,8,18,14;MQ=60;FQ=179;PV4=0.58,1.2e-23,1,0.36 GT:PL:GQ 0/1:206,0,255:99 chr3 111685348 . A G 56 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:88,9,0:16 chr3 111685397 . A G 10.4 . DP=23;VDB=0.0066;AF1=0.5;AC1=1;DP4=12,3,4,0;MQ=55;FQ=13.2;PV4=1,0.35,0,1 GT:PL:GQ 0/1:40,0,226:42 chr3 111685572 . C T 163 . DP=56;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,23,9,20;MQ=59;FQ=166;PV4=0.11,5.5e-19,0.047,0.28 GT:PL:GQ 0/1:193,0,255:99 chr3 111685607 . G A 152 . DP=38;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,15,1,18;MQ=59;FQ=155;PV4=0.34,0.15,0.17,1 GT:PL:GQ 0/1:182,0,240:99 chr3 111686738 . G A 128 . DP=13;VDB=0.0033;AF1=0.5;AC1=1;DP4=2,4,1,6;MQ=60;FQ=120;PV4=0.56,1,1,1 GT:PL:GQ 0/1:158,0,147:99 chr3 111688578 . C T 64 . DP=39;VDB=0.0398;AF1=0.5;AC1=1;DP4=17,2,19,1;MQ=59;FQ=67;PV4=0.6,5.8e-10,1,0.43 GT:PL:GQ 0/1:94,0,211:97 chr3 111705275 . Gtttgttttgttttgttttgtttt GTTTGTtttgttttgttttgttttgtttt 214 . INDEL;DP=32;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,14;MQ=56;FQ=-76.5 GT:PL:GQ 1/1:255,42,0:81 chr3 111705727 . A G 11.3 . DP=6;VDB=0.0126;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=14.1;PV4=1,4.1e-07,1,0.18 GT:PL:GQ 0/1:41,0,58:43 chr3 111709704 . A G 143 . DP=12;VDB=0.0373;AF1=0.5;AC1=1;DP4=0,5,2,5;MQ=60;FQ=86;PV4=0.47,0.091,1,0.11 GT:PL:GQ 0/1:173,0,113:99 chr3 111710201 . ATTTTT ATTTT 25.5 . INDEL;DP=19;VDB=0.0099;AF1=0.5;AC1=1;DP4=8,0,11,0;MQ=60;FQ=15.4;PV4=1,0.34,1,0.13 GT:PL:GQ 0/1:63,0,50:53 chr3 111718507 . C T 8.64 . DP=4;VDB=0.0196;AF1=0.5;AC1=1;DP4=1,1,0,2;MQ=54;FQ=10.8;PV4=1,0.44,0.21,0.17 GT:PL:GQ 0/1:38,0,46:39 chr3 111719786 . A T 58 . DP=16;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,6,1,8;MQ=60;FQ=61;PV4=1,3.7e-07,1,0.07 GT:PL:GQ 0/1:88,0,145:91 chr3 111757212 . A G 72 . DP=12;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,5,2,2;MQ=60;FQ=75;PV4=0.58,0.24,1,1 GT:PL:GQ 0/1:102,0,177:99 chr3 111760771 . A G 171 . DP=61;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,35,23;MQ=60;FQ=-202 GT:PL:GQ 1/1:204,175,0:99 chr3 111760773 . C T 131 . DP=64;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,15,17,9;MQ=60;FQ=134;PV4=0.6,4.3e-24,1,1 GT:PL:GQ 0/1:161,0,255:99 chr3 111763085 . C T 120 . DP=67;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,60,1;MQ=60;FQ=-211 GT:PL:GQ 1/1:153,184,0:99 chr3 111763278 . G T 133 . DP=84;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,9,71;MQ=59;FQ=-268 GT:PL:GQ 1/1:166,241,0:99 chr3 111765834 . G A 222 . DP=109;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,57,46;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 111766215 . A G 222 . DP=88;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,60,24;MQ=59;FQ=-280 GT:PL:GQ 1/1:255,253,0:99 chr3 111766559 . T G 222 . DP=21;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,18,2;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr3 111785208 . G A 216 . DP=39;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,10,8,7;MQ=59;FQ=219;PV4=1,1,0.12,1 GT:PL:GQ 0/1:246,0,255:99 chr3 111793316 . G T 14.2 . DP=42;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,22,1,14;MQ=59;FQ=17.1;PV4=1,2.4e-17,1,1 GT:PL:GQ 0/1:44,0,255:47 chr3 111794365 . A G 6.2 . DP=6;VDB=0.0099;AF1=0.4999;AC1=1;DP4=0,4,1,1;MQ=60;FQ=8.65;PV4=0.33,0.031,1,1 GT:PL:GQ 0/1:35,0,103:36 chr3 111799845 . A T 222 . DP=114;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,40,66;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 111805438 . GT GTT 122 . INDEL;DP=7;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-55.5 GT:PL:GQ 1/1:162,21,0:39 chr3 111828423 . G A 191 . DP=83;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,21,58;MQ=60;FQ=-265 GT:PL:GQ 1/1:224,238,0:99 chr3 111843883 . T C 217 . DP=14;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,11,2;MQ=60;FQ=-66 GT:PL:GQ 1/1:250,39,0:75 chr3 111870228 . C T 104 . DP=114;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,43,16,37;MQ=60;FQ=107;PV4=1,1.8e-49,0.14,0.46 GT:PL:GQ 0/1:134,0,255:99 chr3 111873996 . C T 97 . DP=24;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,8,5,6;MQ=57;FQ=100;PV4=1,2.4e-09,0.19,1 GT:PL:GQ 0/1:127,0,255:99 chr3 111918216 . A G 140 . DP=41;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,8,21;MQ=59;FQ=-114 GT:PL:GQ 1/1:173,87,0:99 chr3 111921010 . A G 56 . DP=6;VDB=0.0050;AF1=0.5;AC1=1;DP4=2,1,3,0;MQ=60;FQ=51.2;PV4=1,1,1,1 GT:PL:GQ 0/1:86,0,79:81 chr3 111921116 . C A 73 . DP=18;VDB=0.0384;AF1=0.5;AC1=1;DP4=5,3,5,4;MQ=60;FQ=76;PV4=1,1.3e-06,1,1 GT:PL:GQ 0/1:103,0,185:99 chr3 111921225 . G T 89 . DP=11;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,2,8;MQ=60;FQ=-57 GT:PL:GQ 1/1:122,30,0:57 chr3 111923123 . G A 161 . DP=17;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,4;MQ=60;FQ=-75 GT:PL:GQ 1/1:194,48,0:93 chr3 111936200 . C A 26.3 . DP=8;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:59,15,0:27 chr3 111962774 . T C 50 . DP=19;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,4,6,1;MQ=59;FQ=53;PV4=0.6,1.9e-07,1,1 GT:PL:GQ 0/1:80,0,232:83 chr3 111962851 . T C 225 . DP=26;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,6,8,8;MQ=59;FQ=174;PV4=0.7,1,0.22,0.1 GT:PL:GQ 0/1:255,0,201:99 chr3 111981849 . C T 119 . DP=82;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,36,14;MQ=60;FQ=-178 GT:PL:GQ 1/1:152,151,0:99 chr3 111981878 . T C 196 . DP=84;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,48,36;MQ=60;FQ=-280 GT:PL:GQ 1/1:229,253,0:99 chr3 111981924 . T C 222 . DP=82;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,22,57;MQ=60;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr3 111983197 . C T 9.31 . DP=2;VDB=0.0084;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr3 111985048 . G A 4.13 . DP=4;VDB=0.0173;AF1=0.4998;AC1=1;DP4=2,0,2,0;MQ=60;FQ=6.2;PV4=1,0.0059,1,0.31 GT:PL:GQ 0/1:32,0,62:31 chr3 111985107 . T C 24 . DP=10;VDB=0.0263;AF1=0.5;AC1=1;DP4=5,1,2,2;MQ=60;FQ=27;PV4=0.5,0.014,1,0.47 GT:PL:GQ 0/1:54,0,143:57 chr3 111988992 . T G 16.1 . DP=7;VDB=0.0110;AF1=0.5;AC1=1;DP4=1,2,1,3;MQ=60;FQ=19.1;PV4=1,0.00024,1,0.087 GT:PL:GQ 0/1:46,0,89:49 chr3 111996554 . T C 133 . DP=14;VDB=0.0033;AF1=0.5;AC1=1;DP4=4,3,6,1;MQ=60;FQ=136;PV4=0.56,1,1,1 GT:PL:GQ 0/1:163,0,182:99 chr3 111999736 . ACTT ACTTGTTTTCTCTT 59.7 . INDEL;DP=9;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,5;MQ=29;FQ=-49.5 GT:PL:GQ 1/1:100,15,0:27 chr3 112005423 . T C 45.1 . DP=6;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:78,18,0:33 chr3 112052103 . G T 136 . DP=19;VDB=0.0343;AF1=0.5;AC1=1;DP4=6,3,7,2;MQ=60;FQ=139;PV4=1,0.28,1,0.37 GT:PL:GQ 0/1:166,0,178:99 chr3 112052173 . T C 222 . DP=31;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,15,14;MQ=60;FQ=-114 GT:PL:GQ 1/1:255,87,0:99 chr3 112059768 . C G 225 . DP=47;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,5,15,8;MQ=60;FQ=225;PV4=0.52,0.16,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 112063850 . C A 45 . DP=28;VDB=0.0216;AF1=0.5;AC1=1;DP4=11,2,11,2;MQ=60;FQ=48;PV4=1,8.6e-12,1,1 GT:PL:GQ 0/1:75,0,211:78 chr3 112066360 . C T 129 . DP=64;VDB=0.0216;AF1=0.5;AC1=1;DP4=23,5,30,6;MQ=60;FQ=132;PV4=1,5.6e-20,1,1 GT:PL:GQ 0/1:159,0,255:99 chr3 112184927 . A G 207 . DP=75;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,64,10;MQ=59;FQ=-250 GT:PL:GQ 1/1:240,223,0:99 chr3 112185025 . G A 222 . DP=125;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,51,72;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 112190137 . G T 222 . DP=78;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,43,32;MQ=60;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr3 112253058 . CAAAAAAAAAA CAAAAAAAAAAA 5.79 . INDEL;DP=73;VDB=0.0365;AF1=1;AC1=2;DP4=2,0,59,10;MQ=59;FQ=-215;PV4=1,1,0.41,0.13 GT:PL:GQ 1/1:45,180,0:54 chr3 112253233 . AAAGAAGAA AAAGAA 146 . INDEL;DP=27;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,15,0,9;MQ=55;FQ=149;PV4=1,0.11,0.00021,1 GT:PL:GQ 0/1:184,0,255:99 chr3 112267523 . G A 222 . DP=84;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,8,70;MQ=60;FQ=-262 GT:PL:GQ 1/1:255,235,0:99 chr3 112280218 . G A 133 . DP=10;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,7,3;MQ=60;FQ=-57 GT:PL:GQ 1/1:166,30,0:57 chr3 112289320 . G A 222 . DP=23;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,21,2;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr3 112289372 . G A 222 . DP=48;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,32,14;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr3 112301458 . CCTT CCTTAGTAATCTT 136 . INDEL;DP=37;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,32,0;MQ=33;FQ=-131 GT:PL:GQ 1/1:177,96,0:99 chr3 112338027 . T C 14.2 . DP=8;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=17.1;PV4=1,0.00036,1,0.5 GT:PL:GQ 0/1:44,0,79:47 chr3 112415652 . G C 113 . DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,4,1;MQ=56;FQ=-42 GT:PL:GQ 1/1:146,15,0:27 chr3 112415838 . G A 109 . DP=47;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,14,11,7;MQ=56;FQ=112;PV4=0.56,1.7e-12,0.21,1 GT:PL:GQ 0/1:139,0,255:99 chr3 112538571 . CTTTTTTTTTT CTTTTTTTTT 3.24 . INDEL;DP=18;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,17,1;MQ=60;FQ=-88.5 GT:PL:GQ 1/1:41,54,0:41 chr3 112546473 . G A 164 . DP=61;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,9,21,13;MQ=52;FQ=167;PV4=0.79,1.3e-25,0.29,1 GT:PL:GQ 0/1:194,0,255:99 chr3 112642568 . C G 225 . DP=25;VDB=0.0099;AF1=0.5;AC1=1;DP4=5,5,6,9;MQ=60;FQ=197;PV4=0.7,1,1,1 GT:PL:GQ 0/1:255,0,224:99 chr3 112647832 . A C 143 . DP=18;VDB=0.0359;AF1=0.5;AC1=1;DP4=1,6,2,6;MQ=57;FQ=122;PV4=1,0.17,1,1 GT:PL:GQ 0/1:173,0,149:99 chr3 112647988 . C T 42 . DP=21;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,1,8,0;MQ=60;FQ=45;PV4=1,1.2e-06,1,1 GT:PL:GQ 0/1:72,0,189:75 chr3 112648222 . T C 20 . DP=25;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,12,0,10;MQ=53;FQ=23;PV4=0.25,4.7e-17,1,0.22 GT:PL:GQ 0/1:50,0,250:53 chr3 112666859 . C T 18.1 . DP=18;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,9,0,8;MQ=60;FQ=21;PV4=1,6.2e-14,1,0.13 GT:PL:GQ 0/1:48,0,161:51 chr3 112693753 . A T 225 . DP=39;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,12,5,15;MQ=60;FQ=225;PV4=0.72,0.23,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 112709828 . C G 14.7 . DP=4;VDB=0.0161;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:47,12,0:19 chr3 112710242 . T C 135 . DP=97;VDB=0.0398;AF1=0.5;AC1=1;DP4=23,25,21,21;MQ=59;FQ=138;PV4=1,8.6e-24,0.46,1 GT:PL:GQ 0/1:165,0,255:99 chr3 112727184 . A T 214 . DP=112;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,34,76;MQ=60;FQ=-282 GT:PL:GQ 1/1:247,255,0:99 chr3 112738318 . C T 77 . DP=13;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:110,36,0:69 chr3 112935138 . C G 222 . DP=78;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,24,52;MQ=60;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr3 112993367 . G A 225 . DP=55;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,17,8,23;MQ=60;FQ=225;PV4=1,0.22,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 112997554 . A G 95 . DP=60;VDB=0.0216;AF1=0.5;AC1=1;DP4=13,17,12,17;MQ=60;FQ=98;PV4=1,2.1e-26,1,1 GT:PL:GQ 0/1:125,0,255:99 chr3 112998268 . G A 137 . DP=31;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,15,4,5;MQ=60;FQ=140;PV4=0.37,0.27,1,1 GT:PL:GQ 0/1:167,0,255:99 chr3 112999611 . A G 225 . DP=56;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,27,4,23;MQ=60;FQ=224;PV4=0.41,0.0097,1,0.053 GT:PL:GQ 0/1:255,0,253:99 chr3 113010303 . G A 47 . DP=14;VDB=0.0140;AF1=0.5;AC1=1;DP4=5,0,9,0;MQ=60;FQ=50;PV4=1,2.9e-07,1,0.44 GT:PL:GQ 0/1:77,0,107:80 chr3 113010466 . T C 111 . DP=30;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,10,3,11;MQ=60;FQ=114;PV4=0.68,5.9e-10,1,1 GT:PL:GQ 0/1:141,0,255:99 chr3 113012797 . G A 143 . DP=10;VDB=0.0359;AF1=0.5263;AC1=1;DP4=1,0,8,1;MQ=60;FQ=-17.1;PV4=1,0.1,1,0.13 GT:PL:GQ 0/1:173,0,10:13 chr3 113013848 . AT ATT 26.5 . INDEL;DP=5;VDB=0.0001;AF1=0.5008;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-9.98;PV4=1,1,1,0.26 GT:PL:GQ 0/1:64,0,25:28 chr3 113015436 . G C 63 . DP=8;VDB=0.0000;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=21;PV4=1,0.1,1,0.12 GT:PL:GQ 0/1:93,0,48:51 chr3 113015464 . G A 91 . DP=34;VDB=0.0011;AF1=0.5;AC1=1;DP4=17,0,13,4;MQ=60;FQ=94;PV4=0.1,1.1e-09,1,0.3 GT:PL:GQ 0/1:121,0,171:99 chr3 113015553 . A C 64 . DP=190;VDB=0.0392;AF1=0.5;AC1=1;DP4=56,33,39,32;MQ=59;FQ=67;PV4=0.33,1.7e-56,0.41,0.47 GT:PL:GQ 0/1:94,0,255:97 chr3 113022870 . T C 222 . DP=100;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,38,58;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 113022996 . G A 35 . DP=21;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,7,1,7;MQ=60;FQ=38;PV4=0.32,2.4e-09,1,0.39 GT:PL:GQ 0/1:65,0,243:68 chr3 113024018 . T C 158 . DP=52;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,11,15,10;MQ=60;FQ=161;PV4=1,1.2e-17,1,1 GT:PL:GQ 0/1:188,0,255:99 chr3 113027214 . A C 19.1 . DP=7;VDB=0.0014;AF1=0.5013;AC1=1;DP4=0,1,0,5;MQ=60;FQ=-5.45;PV4=1,0.0069,1,0.27 GT:PL:GQ 0/1:49,0,23:26 chr3 113046640 . A G 89 . DP=18;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,9,0,7;MQ=60;FQ=92;PV4=0.5,0.39,1,1 GT:PL:GQ 0/1:119,0,203:99 chr3 113115543 . C G 119 . DP=35;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,15,3,14;MQ=59;FQ=122;PV4=0.6,7.6e-12,1,1 GT:PL:GQ 0/1:149,0,194:99 chr3 113128051 . G T 89 . DP=52;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,8,19,8;MQ=60;FQ=92;PV4=1,3.5e-24,1,1 GT:PL:GQ 0/1:119,0,255:99 chr3 113164109 . A G 35 . DP=30;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,3,14,2;MQ=60;FQ=38;PV4=0.64,1.2e-12,1,1 GT:PL:GQ 0/1:65,0,233:68 chr3 113175944 . TAAAAAA TAAAAA 6.55 . INDEL;DP=16;VDB=0.0053;AF1=0.5;AC1=1;DP4=9,0,6,1;MQ=60;FQ=7.55;PV4=0.44,0.27,1,0.36 GT:PL:GQ 0/1:43,0,46:43 chr3 113176122 . G A 133 . DP=85;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,19,31,16;MQ=60;FQ=136;PV4=0.12,3.6e-31,1,0.43 GT:PL:GQ 0/1:163,0,255:99 chr3 113207758 . G A 56 . DP=33;VDB=0.0118;AF1=0.5;AC1=1;DP4=21,0,11,1;MQ=59;FQ=59;PV4=0.36,3.2e-15,0.095,0.045 GT:PL:GQ 0/1:86,0,186:89 chr3 113212041 . G A 87 . DP=54;VDB=0.0271;AF1=0.5;AC1=1;DP4=27,5,18,4;MQ=59;FQ=90;PV4=1,4.6e-20,1,1 GT:PL:GQ 0/1:117,0,255:99 chr3 113218206 . C T 42 . DP=5;VDB=0.0189;AF1=0.5;AC1=1;DP4=1,1,3,0;MQ=55;FQ=31.8;PV4=0.4,0.29,0.25,1 GT:PL:GQ 0/1:72,0,59:62 chr3 113222036 . G A 35 . DP=9;VDB=0.0380;AF1=0.5;AC1=1;DP4=1,3,1,4;MQ=60;FQ=38;PV4=1,0.0011,1,1 GT:PL:GQ 0/1:65,0,100:68 chr3 113300183 . A T 41 . DP=44;VDB=0.0140;AF1=0.5;AC1=1;DP4=20,5,16,2;MQ=59;FQ=44;PV4=0.68,9.2e-24,0.12,1 GT:PL:GQ 0/1:71,0,255:74 chr3 113313947 . C T 43 . DP=9;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,8;MQ=60;FQ=-51 GT:PL:GQ 1/1:76,24,0:45 chr3 113320477 . C T 225 . DP=87;VDB=0.0271;AF1=0.5;AC1=1;DP4=20,32,9,24;MQ=60;FQ=225;PV4=0.35,1,1,0.49 GT:PL:GQ 0/1:255,0,255:99 chr3 113322006 . T G 225 . DP=82;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,20,18,23;MQ=59;FQ=225;PV4=0.82,0.1,1,0.12 GT:PL:GQ 0/1:255,0,255:99 chr3 113323787 . G A 225 . DP=53;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,15,14,14;MQ=59;FQ=225;PV4=0.58,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 113331289 . T G 89 . DP=84;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,39,10,24;MQ=59;FQ=92;PV4=0.3,2.2e-40,0.4,1 GT:PL:GQ 0/1:119,0,255:99 chr3 113373930 . A G 222 . DP=148;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,77,62;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 113375202 . C T 131 . DP=84;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,21,22,16;MQ=60;FQ=134;PV4=0.66,6.8e-30,1,1 GT:PL:GQ 0/1:161,0,255:99 chr3 113376122 . C T 9.52 . DP=46;VDB=0.0053;AF1=0.5;AC1=1;DP4=6,12,1,4;MQ=57;FQ=12.3;PV4=1,0.0041,1,1 GT:PL:GQ 0/1:39,0,254:41 chr3 113499458 . G A 222 . DP=16;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,6,9;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr3 113557690 . G A 29 . DP=13;VDB=0.0066;AF1=0.5;AC1=1;DP4=7,0,6,0;MQ=60;FQ=32;PV4=1,7e-08,1,1 GT:PL:GQ 0/1:59,0,133:62 chr3 113557787 . AGCCGC AGC 214 . INDEL;DP=56;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,42,12;MQ=55;FQ=-198 GT:PL:GQ 1/1:255,163,0:99 chr3 113594377 . A G 222 . DP=91;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,43,45;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 113595156 . C G 120 . DP=19;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,2,17;MQ=60;FQ=-84 GT:PL:GQ 1/1:153,57,0:99 chr3 113619872 . C T 78 . DP=21;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,1;MQ=59;FQ=-87 GT:PL:GQ 1/1:111,60,0:99 chr3 113631884 . A C 85 . DP=27;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,5,12,2;MQ=59;FQ=88;PV4=0.21,1.6e-09,1,0.18 GT:PL:GQ 0/1:115,0,239:99 chr3 113649716 . GT GTT 217 . INDEL;DP=41;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,11,10,10;MQ=60;FQ=217;PV4=1,1,1,0.21 GT:PL:GQ 0/1:255,0,255:99 chr3 113673125 . A G 130 . DP=92;VDB=0.0392;AF1=0.5;AC1=1;DP4=22,25,24,21;MQ=60;FQ=133;PV4=0.68,4.2e-32,0.15,0.25 GT:PL:GQ 0/1:160,0,255:99 chr3 113679589 . C A 164 . DP=93;VDB=0.0398;AF1=0.5;AC1=1;DP4=28,17,22,23;MQ=60;FQ=167;PV4=0.29,1.1e-32,0.16,0.042 GT:PL:GQ 0/1:194,0,255:99 chr3 113679725 . C T 47 . DP=34;VDB=0.0042;AF1=0.5;AC1=1;DP4=2,17,2,13;MQ=59;FQ=50;PV4=1,3.2e-16,1,0.0012 GT:PL:GQ 0/1:77,0,231:80 chr3 113720517 . T A 188 . DP=229;VDB=0.0380;AF1=0.5;AC1=1;DP4=37,67,48,74;MQ=60;FQ=191;PV4=0.58,1.2e-57,1,1 GT:PL:GQ 0/1:218,0,255:99 chr3 113720624 . C T 222 . DP=52;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,4,42;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr3 113785149 . ATATGT A 168 . INDEL;DP=13;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,5,0,7;MQ=56;FQ=171;PV4=0.46,0.0052,0.091,0.11 GT:PL:GQ 0/1:206,0,243:99 chr3 113858350 . C T 123 . DP=12;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,10,2;MQ=60;FQ=-63 GT:PL:GQ 1/1:156,36,0:69 chr3 113890815 . C T 52 . DP=16;VDB=0.0384;AF1=0.5;AC1=1;DP4=2,8,1,5;MQ=60;FQ=55;PV4=1,0.00037,1,1 GT:PL:GQ 0/1:82,0,189:85 chr3 113955164 . T G 194 . DP=69;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,11,21,22;MQ=59;FQ=197;PV4=0.62,3.1e-07,1,1 GT:PL:GQ 0/1:224,0,255:99 chr3 113955187 . A C 165 . DP=60;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,16,9,26;MQ=59;FQ=168;PV4=0.41,2.3e-15,1,1 GT:PL:GQ 0/1:195,0,255:99 chr3 113955265 . G A 225 . DP=48;VDB=0.0359;AF1=0.5;AC1=1;DP4=14,12,11,9;MQ=60;FQ=225;PV4=1,0.054,1,0.17 GT:PL:GQ 0/1:255,0,255:99 chr3 113955320 . C T 225 . DP=54;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,10,16,9;MQ=60;FQ=225;PV4=1,0.00059,1,0.19 GT:PL:GQ 0/1:255,0,255:99 chr3 114026673 . A G 170 . DP=28;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,18,5;MQ=60;FQ=-96 GT:PL:GQ 1/1:203,69,0:99 chr3 114027065 . cgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgt cGTGTgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgt 111 . INDEL;DP=11;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:151,9,0:16 chr3 116163655 . acaaacacacac a 42.5 . INDEL;DP=15;VDB=0.0216;AF1=0.5;AC1=1;DP4=7,2,6,0;MQ=48;FQ=45.5;PV4=0.49,0.3,1.1e-05,1 GT:PL:GQ 0/1:80,0,255:83 chr3 116728295 . GAAAAAA GAAAAAAA 11.3 . INDEL;DP=10;VDB=0.0081;AF1=1;AC1=2;DP4=0,1,0,6;MQ=60;FQ=-38.5;PV4=1,1,1,0.48 GT:PL:GQ 1/1:49,4,0:6 chr3 118269774 . A G 222 . DP=54;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,39;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr3 118381320 . C A 179 . DP=117;VDB=0.0392;AF1=0.5;AC1=1;DP4=30,25,27,31;MQ=60;FQ=182;PV4=0.45,1e-32,1,0.49 GT:PL:GQ 0/1:209,0,255:99 chr3 118649060 . G T 207 . DP=40;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,6,33;MQ=60;FQ=-144 GT:PL:GQ 1/1:240,117,0:99 chr3 118865801 . C T 222 . DP=106;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,48,52;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 118866515 . C T 144 . DP=12;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:177,27,0:51 chr3 118867047 . C G 171 . DP=15;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,6,8;MQ=60;FQ=-69 GT:PL:GQ 1/1:204,42,0:81 chr3 118870025 . A AC 214 . INDEL;DP=74;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,47,25;MQ=59;FQ=-252 GT:PL:GQ 1/1:255,217,0:99 chr3 118909159 . A G 211 . DP=27;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,12;MQ=60;FQ=-102 GT:PL:GQ 1/1:244,75,0:99 chr3 118909962 . T C 222 . DP=32;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,4,27;MQ=59;FQ=-120 GT:PL:GQ 1/1:255,93,0:99 chr3 118909987 . C T 73 . DP=16;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,15;MQ=60;FQ=-72 GT:PL:GQ 1/1:106,45,0:87 chr3 118913261 . TCCC TCCCC 193 . INDEL;DP=38;VDB=0.0190;AF1=0.5;AC1=1;DP4=3,9,5,19;MQ=60;FQ=118;PV4=1,1,1,1 GT:PL:GQ 0/1:231,0,153:99 chr3 118931389 . C T 210 . DP=103;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,53,46;MQ=60;FQ=-282 GT:PL:GQ 1/1:243,255,0:99 chr3 118945796 . G C 225 . DP=68;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,10,24,6;MQ=59;FQ=225;PV4=0.57,0.15,1,0.25 GT:PL:GQ 0/1:255,0,255:99 chr3 118948618 . G C 114 . DP=16;VDB=0.0042;AF1=0.5;AC1=1;DP4=9,0,6,1;MQ=60;FQ=117;PV4=0.44,0.23,1,1 GT:PL:GQ 0/1:144,0,158:99 chr3 118948716 . G A 132 . DP=146;VDB=0.0380;AF1=0.5;AC1=1;DP4=51,22,49,17;MQ=59;FQ=135;PV4=0.58,4e-38,0.033,1 GT:PL:GQ 0/1:162,0,255:99 chr3 119118104 . A G 222 . DP=87;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,53,33;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 119128398 . G A 69 . DP=25;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,7,7,4;MQ=60;FQ=72;PV4=0.69,2.9e-09,1,1 GT:PL:GQ 0/1:99,0,255:99 chr3 119133183 . G A 168 . DP=59;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,15,12,18;MQ=60;FQ=171;PV4=0.79,1.4e-18,1,1 GT:PL:GQ 0/1:198,0,255:99 chr3 119150836 . C T 118 . DP=40;VDB=0.0271;AF1=0.5;AC1=1;DP4=20,2,14,4;MQ=60;FQ=121;PV4=0.38,4.2e-17,1,1 GT:PL:GQ 0/1:148,0,244:99 chr3 119170218 . A G 63 . DP=24;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,10,1,10;MQ=60;FQ=66;PV4=1,1.8e-14,1,0.27 GT:PL:GQ 0/1:93,0,220:96 chr3 119171280 . C G 225 . DP=99;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,29,23,23;MQ=60;FQ=225;PV4=0.54,0.48,1,0.44 GT:PL:GQ 0/1:255,0,255:99 chr3 119188895 . C G 45 . DP=23;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,12,1,9;MQ=60;FQ=48;PV4=0.45,2.5e-12,1,0.17 GT:PL:GQ 0/1:75,0,171:78 chr3 119196334 . G T 5.46 . DP=15;VDB=0.0081;AF1=0.4999;AC1=1;DP4=0,10,0,5;MQ=58;FQ=7.8;PV4=1,6.9e-07,0.082,0.24 GT:PL:GQ 0/1:34,0,164:34 chr3 119197285 . A G 225 . DP=62;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,21,9,17;MQ=59;FQ=225;PV4=0.61,0.026,0.019,1 GT:PL:GQ 0/1:255,0,255:99 chr3 119198873 . G A 139 . DP=122;VDB=0.0400;AF1=0.5;AC1=1;DP4=29,26,31,35;MQ=59;FQ=142;PV4=0.59,1.5e-50,0.056,0.034 GT:PL:GQ 0/1:169,0,255:99 chr3 119222456 . G C 203 . DP=33;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,12,3,14;MQ=60;FQ=202;PV4=1,0.22,1,0.069 GT:PL:GQ 0/1:233,0,232:99 chr3 119348130 . G C 15.1 . DP=6;VDB=0.0040;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=60;FQ=18.1;PV4=1,6.8e-05,1,0.33 GT:PL:GQ 0/1:45,0,77:48 chr3 119348344 . CAT CATAT 148 . INDEL;DP=56;VDB=0.0325;AF1=0.5;AC1=1;DP4=12,8,8,8;MQ=57;FQ=151;PV4=0.74,0.17,0.045,0.074 GT:PL:GQ 0/1:186,0,255:99 chr3 119361250 . A G 51 . DP=5;VDB=0.0199;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=22;PV4=1,1,1,1 GT:PL:GQ 0/1:81,0,49:52 chr3 119367390 . T C 222 . DP=58;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,20,37;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr3 119373301 . G A 23.5 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:56,12,0:21 chr3 119373315 . T C 105 . DP=5;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:138,15,0:27 chr3 119378872 . G A 225 . DP=118;VDB=0.0399;AF1=0.5;AC1=1;DP4=23,29,35,30;MQ=60;FQ=225;PV4=0.35,0.19,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 119378977 . G A 179 . DP=90;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,20,21,33;MQ=60;FQ=182;PV4=1,3.5e-24,1,1 GT:PL:GQ 0/1:209,0,255:99 chr3 119379186 . C T 225 . DP=70;VDB=0.0384;AF1=0.5;AC1=1;DP4=11,26,7,24;MQ=60;FQ=225;PV4=0.59,1,1,0.022 GT:PL:GQ 0/1:255,0,255:99 chr3 119394168 . C T 22 . DP=9;VDB=0.0222;AF1=0.5;AC1=1;DP4=1,5,0,2;MQ=60;FQ=25;PV4=1,1,1,1 GT:PL:GQ 0/1:52,0,143:55 chr3 119395662 . C G 225 . DP=68;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,13,15,12;MQ=60;FQ=225;PV4=0.44,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 119426307 . T C 173 . DP=28;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,19,6;MQ=60;FQ=-102 GT:PL:GQ 1/1:206,75,0:99 chr3 119434527 . G C 222 . DP=46;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,26,16;MQ=59;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr3 119445021 . G A 15.1 . DP=8;VDB=0.0140;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=60;FQ=18.1;PV4=1,0.00028,1,1 GT:PL:GQ 0/1:45,0,67:48 chr3 119459639 . A T 6.98 . DP=8;VDB=0.0224;AF1=0.4999;AC1=1;DP4=0,5,0,3;MQ=60;FQ=9.53;PV4=1,0.0014,1,1 GT:PL:GQ 0/1:36,0,109:37 chr3 119501580 . GCCCCC GCCCCCC 27.5 . INDEL;DP=18;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,0,12,0;MQ=60;FQ=4.42;PV4=1,1,1,0.21 GT:PL:GQ 0/1:65,0,37:40 chr3 119501780 . G A 159 . DP=33;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,7,25;MQ=59;FQ=-123 GT:PL:GQ 1/1:192,96,0:99 chr3 119501798 . T A 154 . DP=26;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,6,19;MQ=60;FQ=-102 GT:PL:GQ 1/1:187,75,0:99 chr3 119529113 . G T 73 . DP=9;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:106,27,0:51 chr3 119531709 . C T 225 . DP=50;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,12,12,10;MQ=60;FQ=225;PV4=1,0.075,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 119533733 . G A 56 . DP=5;VDB=0.0080;AF1=0.5;AC1=1;DP4=1,1,3,0;MQ=60;FQ=24;PV4=0.4,1,1,0.3 GT:PL:GQ 0/1:86,0,51:54 chr3 119533773 . T C 122 . DP=12;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,10,2;MQ=60;FQ=-63 GT:PL:GQ 1/1:155,36,0:69 chr3 119533910 . T C 222 . DP=40;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,21,18;MQ=59;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr3 119534153 . C T 70 . DP=25;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,6,5,7;MQ=60;FQ=73;PV4=1,2.5e-08,1,1 GT:PL:GQ 0/1:100,0,230:99 chr3 119721171 . T C 18.1 . DP=7;VDB=0.0196;AF1=0.5;AC1=1;DP4=1,4,0,2;MQ=60;FQ=21;PV4=1,1,1,0.29 GT:PL:GQ 0/1:48,0,129:51 chr3 119886548 . G C 212 . DP=90;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,35,50;MQ=60;FQ=-282 GT:PL:GQ 1/1:245,255,0:99 chr3 119886776 . T A 196 . DP=51;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,19,30;MQ=59;FQ=-175 GT:PL:GQ 1/1:229,148,0:99 chr3 119892121 . C G 14.2 . DP=12;VDB=0.0082;AF1=0.5;AC1=1;DP4=8,0,4,0;MQ=60;FQ=17.1;PV4=1,1.1e-06,1,1 GT:PL:GQ 0/1:44,0,144:47 chr3 119900260 . T C 41.8 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:73,6,0:10 chr3 119904125 . A G 222 . DP=64;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,37,26;MQ=60;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr3 119904315 . G C 188 . DP=28;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,21;MQ=60;FQ=-105 GT:PL:GQ 1/1:221,78,0:99 chr3 119905641 . G A 205 . DP=24;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,13,11;MQ=60;FQ=-99 GT:PL:GQ 1/1:238,72,0:99 chr3 119911667 . G A 49 . DP=11;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:82,33,0:63 chr3 119912297 . C A 62 . DP=43;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,17,0,22;MQ=60;FQ=65;PV4=0.21,2.3e-23,1,1 GT:PL:GQ 0/1:92,0,235:95 chr3 119962322 . G C 4.77 . DP=6;VDB=0.0020;AF1=0.4999;AC1=1;DP4=2,1,3,0;MQ=60;FQ=6.98;PV4=1,0.004,1,1 GT:PL:GQ 0/1:33,0,83:33 chr3 120067797 . G A 108 . DP=37;VDB=0.0164;AF1=0.5;AC1=1;DP4=9,14,10,4;MQ=59;FQ=111;PV4=0.091,9e-11,0.033,1 GT:PL:GQ 0/1:138,0,255:99 chr3 120134720 . A AG 126 . INDEL;DP=11;VDB=0.0011;AF1=0.5;AC1=1;DP4=4,0,6,1;MQ=60;FQ=48.5;PV4=1,1,1,0.43 GT:PL:GQ 0/1:164,0,83:86 chr3 120134883 . T C 225 . DP=79;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,21,25,17;MQ=60;FQ=225;PV4=0.17,0.056,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 120169641 . T C 222 . DP=42;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,16,25;MQ=60;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr3 120320939 . C T 141 . DP=13;VDB=0.0373;AF1=0.5;AC1=1;DP4=2,4,3,4;MQ=60;FQ=129;PV4=1,0.2,1,0.023 GT:PL:GQ 0/1:171,0,156:99 chr3 120352003 . A G 163 . DP=35;VDB=0.0042;AF1=0.5;AC1=1;DP4=19,2,13,1;MQ=59;FQ=166;PV4=1,1,1,1 GT:PL:GQ 0/1:193,0,225:99 chr3 120369575 . T G 225 . DP=79;VDB=0.0365;AF1=0.5;AC1=1;DP4=25,19,21,12;MQ=60;FQ=225;PV4=0.64,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 120371369 . G A 224 . DP=24;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,4,10,4;MQ=60;FQ=185;PV4=0.67,0.32,1,0.37 GT:PL:GQ 0/1:254,0,212:99 chr3 120371414 . G A 143 . DP=29;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,10,19;MQ=60;FQ=-114 GT:PL:GQ 1/1:176,87,0:99 chr3 120389316 . T A 222 . DP=59;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,33,25;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr3 120394604 . T A 57 . DP=47;VDB=0.0140;AF1=0.5;AC1=1;DP4=20,3,22,2;MQ=60;FQ=60;PV4=0.67,1.4e-19,0.17,1 GT:PL:GQ 0/1:87,0,243:90 chr3 120409526 . C T 13.2 . DP=3;VDB=0.0176;AF1=0.5001;AC1=1;DP4=0,1,0,2;MQ=60;FQ=5.95;PV4=1,0.022,1,0.33 GT:PL:GQ 0/1:43,0,32:35 chr3 120413158 . G A 222 . DP=34;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,6,27;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr3 120500093 . C T 113 . DP=55;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,16,9,13;MQ=60;FQ=116;PV4=0.59,1.7e-18,0.12,1 GT:PL:GQ 0/1:143,0,255:99 chr3 120760495 . T G 40 . DP=11;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,2,6,0;MQ=60;FQ=43;PV4=0.18,5.1e-05,1,1 GT:PL:GQ 0/1:70,0,133:73 chr3 120833993 . C T 136 . DP=12;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,5,1,6;MQ=60;FQ=76;PV4=1,1,1,1 GT:PL:GQ 0/1:166,0,103:99 chr3 121043357 . C A 111 . DP=109;VDB=0.0392;AF1=0.5;AC1=1;DP4=30,24,29,21;MQ=60;FQ=114;PV4=0.84,1.1e-40,1,0.47 GT:PL:GQ 0/1:141,0,255:99 chr3 121137976 . C T 126 . DP=31;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,8,10,6;MQ=60;FQ=129;PV4=0.48,4.6e-11,1,1 GT:PL:GQ 0/1:156,0,255:99 chr3 121138015 . C T 133 . DP=31;VDB=0.0384;AF1=0.5;AC1=1;DP4=6,9,7,9;MQ=60;FQ=136;PV4=1,1.7e-14,1,0.077 GT:PL:GQ 0/1:163,0,255:99 chr3 121154974 . T C 129 . DP=94;VDB=0.0345;AF1=0.5;AC1=1;DP4=38,8,35,12;MQ=59;FQ=132;PV4=0.45,1e-43,0.08,1 GT:PL:GQ 0/1:159,0,255:99 chr3 121155198 . C T 81 . DP=38;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,14,2,20;MQ=60;FQ=84;PV4=1,2.9e-16,1,1 GT:PL:GQ 0/1:111,0,215:99 chr3 121186543 . A G 46 . DP=42;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,20,2,20;MQ=60;FQ=49;PV4=0.49,1.2e-26,1,1 GT:PL:GQ 0/1:76,0,181:79 chr3 121195302 . Tacacacacacacacacacacacacacacaca Tacacacacacacacacacacacacaca 217 . INDEL;DP=12;VDB=0.0066;AF1=0.5;AC1=1;DP4=4,2,4,2;MQ=60;FQ=217;PV4=1,0.16,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 121208833 . G C 225 . DP=40;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,11,11,11;MQ=60;FQ=225;PV4=0.54,0.015,1,0.47 GT:PL:GQ 0/1:255,0,255:99 chr3 121228833 . A C 7.8 . DP=49;VDB=0.0042;AF1=0.5;AC1=1;DP4=25,0,20,0;MQ=60;FQ=10.4;PV4=1,7.9e-34,1,1 GT:PL:GQ 0/1:37,0,188:39 chr3 121238749 . G A 222 . DP=65;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,37,25;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr3 121241058 . C G 92 . DP=26;VDB=0.0019;AF1=0.5;AC1=1;DP4=1,16,0,8;MQ=59;FQ=95;PV4=1,1,0.074,0.45 GT:PL:GQ 0/1:122,0,207:99 chr3 121263720 . C A 222 . DP=79;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,11,64;MQ=59;FQ=-253 GT:PL:GQ 1/1:255,226,0:99 chr3 121264824 . G A 165 . DP=48;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,17,7,17;MQ=59;FQ=168;PV4=1,3.7e-13,1,1 GT:PL:GQ 0/1:195,0,255:99 chr3 121265522 . A C 31 . DP=34;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,10,1,16;MQ=59;FQ=34;PV4=0.076,3.4e-15,1,1 GT:PL:GQ 0/1:61,0,249:64 chr3 121339354 . T C 52 . DP=9;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:85,24,0:45 chr3 121345562 . C T 57 . DP=72;VDB=0.0244;AF1=0.5;AC1=1;DP4=35,9,24,4;MQ=59;FQ=60;PV4=0.75,1.9e-29,0.37,1 GT:PL:GQ 0/1:87,0,255:90 chr3 121350616 . G T 182 . DP=10;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:215,27,0:51 chr3 121350966 . C G 222 . DP=24;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,6,18;MQ=59;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr3 121351480 . T C 6.79 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:37,6,0:7 chr3 121353254 . T C 222 . DP=50;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,17,30;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr3 121353328 . A C 114 . DP=15;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,2,12;MQ=60;FQ=-69 GT:PL:GQ 1/1:147,42,0:81 chr3 121354381 . A T 53 . DP=3;VDB=0.0010;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:85,9,0:16 chr3 121361646 . G A 116 . DP=24;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,13,6;MQ=60;FQ=-84 GT:PL:GQ 1/1:149,57,0:99 chr3 121361787 . G A 222 . DP=42;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,26;MQ=59;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr3 121366123 . C T 197 . DP=51;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,35,11;MQ=59;FQ=-165 GT:PL:GQ 1/1:230,138,0:99 chr3 121366377 . A G 91 . DP=22;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,2,20;MQ=60;FQ=-93 GT:PL:GQ 1/1:124,66,0:99 chr3 121418765 . T C 177 . DP=34;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,31;MQ=59;FQ=-120 GT:PL:GQ 1/1:210,93,0:99 chr3 121435621 . T C 152 . DP=57;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,26;MQ=59;FQ=-193 GT:PL:GQ 1/1:185,166,0:99 chr3 121435624 . C T 189 . DP=55;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,27,26;MQ=59;FQ=-187 GT:PL:GQ 1/1:222,160,0:99 chr3 121448675 . T A 147 . DP=37;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,32,3;MQ=59;FQ=-132 GT:PL:GQ 1/1:180,105,0:99 chr3 121563355 . T C 222 . DP=45;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,28,14;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr3 121613205 . G C 120 . DP=7;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:153,21,0:39 chr3 121630328 . A G 193 . DP=12;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:226,36,0:69 chr3 121633964 . C T 139 . DP=16;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:172,42,0:81 chr3 121634171 . ATTTTTTT ATTTTTTTT 111 . INDEL;DP=56;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,33;MQ=60;FQ=-176 GT:PL:GQ 1/1:152,141,0:99 chr3 121634410 . T A 222 . DP=94;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,76,14;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 121641528 . G A 84 . DP=30;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,29,1;MQ=59;FQ=-117 GT:PL:GQ 1/1:117,90,0:99 chr3 121641693 . G A 222 . DP=97;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,37,55;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 121641821 . A G 222 . DP=108;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,73,30;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 121642048 . A T 192 . DP=94;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,38,54;MQ=60;FQ=-282 GT:PL:GQ 1/1:225,255,0:99 chr3 121643170 . A T 200 . DP=41;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,31,6;MQ=58;FQ=-138 GT:PL:GQ 1/1:233,111,0:99 chr3 121643303 . T A 147 . DP=85;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,31,54;MQ=59;FQ=-282 GT:PL:GQ 1/1:180,255,0:99 chr3 121643337 . G A 222 . DP=62;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,12,45;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr3 121643372 . C T 162 . DP=37;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,6,27;MQ=59;FQ=-126 GT:PL:GQ 1/1:195,99,0:99 chr3 121643427 . G A 74 . DP=8;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:107,24,0:45 chr3 121643436 . G A 84.5 . DP=5;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:117,12,0:21 chr3 121643699 . G A 215 . DP=43;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,37,1;MQ=60;FQ=-141 GT:PL:GQ 1/1:248,114,0:99 chr3 121643804 . C T 126 . DP=137;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,39,43;MQ=59;FQ=-274 GT:PL:GQ 1/1:159,247,0:99 chr3 121643893 . T C 222 . DP=119;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,30,85;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 121646495 . C T 165 . DP=12;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:198,33,0:63 chr3 121646641 . A G 222 . DP=69;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,38,29;MQ=60;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr3 121646759 . G A 94 . DP=21;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,20;MQ=60;FQ=-87 GT:PL:GQ 1/1:127,60,0:99 chr3 121647286 . C T 215 . DP=39;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,25,13;MQ=60;FQ=-141 GT:PL:GQ 1/1:248,114,0:99 chr3 121647467 . C T 173 . DP=11;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:206,27,0:51 chr3 121647782 . C G 54.3 . DP=5;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:87,15,0:27 chr3 121648168 . G A 197 . DP=171;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,110,53;MQ=60;FQ=-282;PV4=1,1,1,0.23 GT:PL:GQ 1/1:230,255,0:99 chr3 121658082 . A G 73 . DP=11;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:106,33,0:63 chr3 121659197 . G A 128 . DP=21;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,16,4;MQ=59;FQ=-87 GT:PL:GQ 1/1:161,60,0:99 chr3 121659202 . G A 204 . DP=22;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,2,11,3;MQ=58;FQ=137;PV4=1,0.26,0.14,0.18 GT:PL:GQ 0/1:234,0,164:99 chr3 121712051 . A C 183 . DP=57;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,36,17;MQ=60;FQ=-187 GT:PL:GQ 1/1:216,160,0:99 chr3 121712980 . C T 215 . DP=62;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,27,27;MQ=60;FQ=-190 GT:PL:GQ 1/1:248,163,0:99 chr3 121740829 . C A 88 . DP=17;VDB=0.0343;AF1=0.5;AC1=1;DP4=4,2,9,1;MQ=60;FQ=91;PV4=0.52,6.8e-06,1,1 GT:PL:GQ 0/1:118,0,138:99 chr3 121810427 . CTTTTTTTTT CTTTTTTTT 85.5 . INDEL;DP=144;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,40,80;MQ=60;FQ=-290 GT:PL:GQ 1/1:126,255,0:99 chr3 121825197 . G A 222 . DP=184;VDB=0.0399;AF1=1;AC1=2;DP4=1,0,134,34;MQ=59;FQ=-282;PV4=1,1,1,0.21 GT:PL:GQ 1/1:255,255,0:99 chr3 121836966 . TGAGAGAGAG TGAGAGAG 214 . INDEL;DP=62;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,24,32;MQ=60;FQ=-204 GT:PL:GQ 1/1:255,169,0:99 chr3 121838319 . G A 59 . DP=21;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,4,5,4;MQ=60;FQ=62;PV4=1,1.8e-05,1,1 GT:PL:GQ 0/1:89,0,206:92 chr3 121976253 . G A 4.61 . DP=2;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:34,6,0:5 chr3 122000871 . C T 29 . DP=28;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,10,6,3;MQ=60;FQ=32;PV4=0.42,8.5e-10,1,1 GT:PL:GQ 0/1:59,0,255:62 chr3 122003045 . G C 161 . DP=90;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,45,38;MQ=60;FQ=-277 GT:PL:GQ 1/1:194,250,0:99 chr3 122003832 . G C 222 . DP=105;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,40,58;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 122004098 . A T 103 . DP=12;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,1,11;MQ=58;FQ=-63 GT:PL:GQ 1/1:136,36,0:69 chr3 122056432 . C T 213 . DP=19;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,1;MQ=60;FQ=-84 GT:PL:GQ 1/1:246,57,0:99 chr3 122128466 . G C 86 . DP=21;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,19,0;MQ=60;FQ=-84 GT:PL:GQ 1/1:119,57,0:99 chr3 122128519 . G C 225 . DP=63;VDB=0.0271;AF1=0.5;AC1=1;DP4=25,10,22,5;MQ=60;FQ=225;PV4=0.39,1,1,0.32 GT:PL:GQ 0/1:255,0,255:99 chr3 122133830 . T G 225 . DP=140;VDB=0.0399;AF1=0.5;AC1=1;DP4=34,32,38,33;MQ=60;FQ=225;PV4=0.86,0.2,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 122145810 . T A 106 . DP=16;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,15,1;MQ=60;FQ=-75 GT:PL:GQ 1/1:139,48,0:93 chr3 122168341 . C A 28 . DP=14;VDB=0.0014;AF1=0.5;AC1=1;DP4=6,0,8,0;MQ=60;FQ=31;PV4=1,2.1e-09,1,0.36 GT:PL:GQ 0/1:58,0,127:61 chr3 122186141 . A G 82 . DP=39;VDB=0.0398;AF1=0.5;AC1=1;DP4=14,4,14,5;MQ=60;FQ=85;PV4=1,1.8e-17,1,1 GT:PL:GQ 0/1:112,0,255:99 chr3 122186188 . C T 217 . DP=57;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,39,16;MQ=59;FQ=-193 GT:PL:GQ 1/1:250,166,0:99 chr3 122259606 . T C 225 . DP=97;VDB=0.0399;AF1=0.5;AC1=1;DP4=30,28,23,15;MQ=59;FQ=225;PV4=0.41,0.38,0.022,1 GT:PL:GQ 0/1:255,0,255:99 chr3 122274757 . G C 225 . DP=75;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,23,16,16;MQ=60;FQ=225;PV4=0.81,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 122285005 . G A 23 . DP=11;VDB=0.0014;AF1=0.5;AC1=1;DP4=1,4,0,6;MQ=60;FQ=26;PV4=0.45,2.8e-07,1,1 GT:PL:GQ 0/1:53,0,130:56 chr3 122288210 . G A 102 . DP=135;VDB=0.0365;AF1=0.5;AC1=1;DP4=44,19,34,34;MQ=60;FQ=105;PV4=0.032,3.6e-60,1,1 GT:PL:GQ 0/1:132,0,255:99 chr3 122296638 . G A 225 . DP=38;VDB=0.0384;AF1=0.5;AC1=1;DP4=4,12,6,15;MQ=60;FQ=173;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,200:99 chr3 122418750 . G A 87 . DP=75;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,22,12,25;MQ=59;FQ=90;PV4=0.63,7.3e-39,0.081,0.44 GT:PL:GQ 0/1:117,0,255:99 chr3 122419292 . A G 225 . DP=140;VDB=0.0345;AF1=0.5;AC1=1;DP4=34,45,23,36;MQ=60;FQ=225;PV4=0.73,1,0.42,1 GT:PL:GQ 0/1:255,0,255:99 chr3 122432171 . G A 125 . DP=45;VDB=0.0244;AF1=0.5;AC1=1;DP4=16,6,15,7;MQ=60;FQ=128;PV4=1,6.1e-22,1,1 GT:PL:GQ 0/1:155,0,255:99 chr3 122437321 . T C 222 . DP=144;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,61,75;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 122437834 . A G 172 . DP=69;VDB=0.0345;AF1=0.5;AC1=1;DP4=6,40,2,20;MQ=59;FQ=175;PV4=1,1,1,1 GT:PL:GQ 0/1:202,0,255:99 chr3 122437901 . A G 18.1 . DP=25;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,9,0,16;MQ=60;FQ=21;PV4=1,1.6e-18,1,1 GT:PL:GQ 0/1:48,0,137:51 chr3 122439062 . C T 92 . DP=31;VDB=0.0190;AF1=0.5;AC1=1;DP4=13,4,12,2;MQ=58;FQ=95;PV4=0.66,3.7e-14,0.45,0.18 GT:PL:GQ 0/1:122,0,255:99 chr3 122439371 . T C 23 . DP=15;VDB=0.0011;AF1=0.5;AC1=1;DP4=1,8,0,5;MQ=60;FQ=26;PV4=1,1.4e-07,1,0.49 GT:PL:GQ 0/1:53,0,181:56 chr3 122439511 . A G 148 . DP=30;VDB=0.0053;AF1=0.5;AC1=1;DP4=11,4,14,1;MQ=60;FQ=151;PV4=0.33,0.26,1,0.38 GT:PL:GQ 0/1:178,0,255:99 chr3 122439629 . T A 103 . DP=81;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,17,17,36;MQ=60;FQ=106;PV4=0.8,2e-39,1,1 GT:PL:GQ 0/1:133,0,255:99 chr3 122439754 . C G 15.1 . DP=5;VDB=0.0116;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=17.3;PV4=1,0.0026,1,1 GT:PL:GQ 0/1:45,0,52:47 chr3 122446642 . C T 16.1 . DP=37;VDB=0.0298;AF1=0.5;AC1=1;DP4=19,0,15,0;MQ=59;FQ=19.1;PV4=1,2.1e-21,1,1 GT:PL:GQ 0/1:46,0,177:49 chr3 122459290 . GAG GAGAAG 217 . INDEL;DP=79;VDB=0.0400;AF1=0.5;AC1=1;DP4=32,5,34,5;MQ=55;FQ=217;PV4=1,1,3.7e-05,0.16 GT:PL:GQ 0/1:255,0,255:99 chr3 122459732 . G A 114 . DP=75;VDB=0.0393;AF1=0.5;AC1=1;DP4=17,18,23,13;MQ=60;FQ=117;PV4=0.24,1e-28,0.16,0.081 GT:PL:GQ 0/1:144,0,255:99 chr3 122477795 . G A 42 . DP=19;VDB=0.0053;AF1=0.5;AC1=1;DP4=4,4,2,9;MQ=58;FQ=45;PV4=0.32,1.2e-08,1,0.11 GT:PL:GQ 0/1:72,0,184:75 chr3 122478032 . Ccacacacacacacacacacacacacacacacaca Ccacacacacacacacacacacacacacacaca,Ccacacacacacacacacacacacacacaca,CAcacacacacacacacacacacacacacacacaca 35.2 . INDEL;DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:124,56,50,73,0,70,118,45,64,115:10 chr3 122591230 . G A 225 . DP=77;VDB=0.0298;AF1=0.5;AC1=1;DP4=29,3,37,5;MQ=60;FQ=217;PV4=1,1,1,0.39 GT:PL:GQ 0/1:255,0,244:99 chr3 122605544 . G A 129 . DP=70;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,15,21,14;MQ=60;FQ=132;PV4=0.81,9.7e-27,1,1 GT:PL:GQ 0/1:159,0,255:99 chr3 122629589 . A G 7.59 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,0;MQ=29;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr3 122630323 . T G 188 . DP=30;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,8,21;MQ=59;FQ=-114 GT:PL:GQ 1/1:221,87,0:99 chr3 122630346 . T C 159 . DP=22;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,17;MQ=59;FQ=-90 GT:PL:GQ 1/1:192,63,0:99 chr3 122631896 . A T 222 . DP=19;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,16;MQ=60;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr3 122642401 . G A 225 . DP=52;VDB=0.0398;AF1=0.5;AC1=1;DP4=19,8,16,6;MQ=59;FQ=225;PV4=1,0.27,0.057,1 GT:PL:GQ 0/1:255,0,255:99 chr3 122642415 . G C 89 . DP=52;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,9,14,8;MQ=59;FQ=92;PV4=0.77,1.6e-14,0.054,0.3 GT:PL:GQ 0/1:119,0,255:99 chr3 122642590 . G A 117 . DP=31;VDB=0.0099;AF1=0.5;AC1=1;DP4=2,9,2,18;MQ=60;FQ=120;PV4=0.6,2.9e-12,1,1 GT:PL:GQ 0/1:147,0,181:99 chr3 122658417 . G T 7.8 . DP=9;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,2,0,6;MQ=60;FQ=10.2;PV4=1,7.3e-08,1,0.32 GT:PL:GQ 0/1:37,0,49:38 chr3 122680141 . A G 177 . DP=63;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,13,15,16;MQ=59;FQ=180;PV4=0.61,1e-15,0.078,1 GT:PL:GQ 0/1:207,0,255:99 chr3 122680171 . A G 180 . DP=66;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,19,14,16;MQ=59;FQ=183;PV4=1,5.2e-16,0.24,1 GT:PL:GQ 0/1:210,0,255:99 chr3 122680240 . C A 73 . DP=31;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,13,2,14;MQ=58;FQ=76;PV4=1,3.6e-12,1,1 GT:PL:GQ 0/1:103,0,213:99 chr3 122811042 . A G 55.1 . DP=7;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:88,21,0:39 chr3 122821108 . C T 3.01 . DP=6;VDB=0.0188;AF1=0.4997;AC1=1;DP4=4,0,2,0;MQ=60;FQ=4.77;PV4=1,0.0022,1,1 GT:PL:GQ 0/1:30,0,97:28 chr3 122821385 . T C 225 . DP=54;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,26,3,20;MQ=60;FQ=225;PV4=1,0.5,0.13,0.26 GT:PL:GQ 0/1:255,0,255:99 chr3 122834887 . A T 80.3 . DP=6;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:113,15,0:27 chr3 122835210 . A G 15.6 . DP=4;VDB=0.0082;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:48,12,0:20 chr3 122835232 . T C 10.4 . DP=3;VDB=0.0030;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:42,9,0:13 chr3 122843110 . G T 157 . DP=94;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,28,61;MQ=60;FQ=-282 GT:PL:GQ 1/1:190,255,0:99 chr3 122843212 . C T 222 . DP=64;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,30,33;MQ=60;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr3 122864436 . G A 172 . DP=45;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,10,13,12;MQ=58;FQ=175;PV4=1,2.7e-16,0.21,0.46 GT:PL:GQ 0/1:202,0,255:99 chr3 122864587 . TAGACAGA TAGA 31.5 . INDEL;DP=9;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=47;FQ=34.5;PV4=1,0.0019,0,1 GT:PL:GQ 0/1:69,0,165:72 chr3 122865136 . T A 125 . DP=40;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,13,6,12;MQ=60;FQ=128;PV4=1,3.4e-15,1,1 GT:PL:GQ 0/1:155,0,255:99 chr3 122880911 . T G 62 . DP=14;VDB=0.0164;AF1=0.5;AC1=1;DP4=1,4,2,7;MQ=60;FQ=65;PV4=1,1.3e-09,1,0.067 GT:PL:GQ 0/1:92,0,127:95 chr3 123014877 . C T 89 . DP=13;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:122,39,0:75 chr3 123015094 . G C 200 . DP=67;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,52;MQ=59;FQ=-226 GT:PL:GQ 1/1:233,199,0:99 chr3 123018963 . A G 222 . DP=40;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,32,5;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr3 123021838 . A G 5.29 . DP=2;VDB=0.0163;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:35,6,0:6 chr3 123022740 . G A 23.3 . DP=6;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:56,15,0:26 chr3 123037047 . A C 12 . DP=2;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr3 123047666 . A G 119 . DP=30;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,2,27;MQ=59;FQ=-114 GT:PL:GQ 1/1:152,87,0:99 chr3 123066555 . AAAGGAAG AAAGGAAGGAAG 214 . INDEL;DP=19;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,18,1;MQ=54;FQ=-91.5 GT:PL:GQ 1/1:255,57,0:99 chr3 123086587 . G A 43 . DP=14;VDB=0.0014;AF1=0.5;AC1=1;DP4=7,0,7,0;MQ=60;FQ=46;PV4=1,5e-08,1,1 GT:PL:GQ 0/1:73,0,138:76 chr3 123167249 . G A 110 . DP=11;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,9;MQ=60;FQ=-57 GT:PL:GQ 1/1:143,30,0:57 chr3 123378534 . C G 222 . DP=27;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,10,17;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr3 123411589 . G A 199 . DP=37;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,31,6;MQ=59;FQ=-138 GT:PL:GQ 1/1:232,111,0:99 chr3 123418913 . G A 222 . DP=103;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,38,61;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 123440967 . G A 222 . DP=142;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,76,64;MQ=58;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 123451773 . G C 222 . DP=37;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,23,12;MQ=59;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr3 123452838 . G A 91 . DP=28;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,8,7,5;MQ=59;FQ=94;PV4=0.7,2.1e-09,0.14,1 GT:PL:GQ 0/1:121,0,252:99 chr3 123456432 . C T 222 . DP=59;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,10,45;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr3 123457711 . C A 169 . DP=20;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,18,0;MQ=59;FQ=-81 GT:PL:GQ 1/1:202,54,0:99 chr3 123457893 . G A 181 . DP=79;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,33,42;MQ=60;FQ=-253 GT:PL:GQ 1/1:214,226,0:99 chr3 123633612 . G A 55.1 . DP=6;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:88,18,0:33 chr3 123634046 . G A 222 . DP=38;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,25,11;MQ=59;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr3 123652476 . G A 129 . DP=26;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,24,2;MQ=60;FQ=-105 GT:PL:GQ 1/1:162,78,0:99 chr3 123665902 . T G 131 . DP=59;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,19,37;MQ=60;FQ=-196 GT:PL:GQ 1/1:164,169,0:99 chr3 123666192 . C T 88 . DP=28;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,27;MQ=58;FQ=-111 GT:PL:GQ 1/1:121,84,0:99 chr3 123688760 . C G 116 . DP=32;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,30,1;MQ=60;FQ=-120 GT:PL:GQ 1/1:149,93,0:99 chr3 123694595 . C G 37 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,1,2;MQ=25;FQ=-36 GT:PL:GQ 1/1:69,9,0:16 chr3 123988039 . T C 222 . DP=20;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,4,16;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr3 124044949 . C T 188 . DP=88;VDB=0.0380;AF1=1;AC1=2;DP4=2,0,22,56;MQ=59;FQ=-213;PV4=0.087,0.0021,1,0.15 GT:PL:GQ 1/1:221,186,0:99 chr3 124113929 . A T 225 . DP=26;VDB=0.0216;AF1=0.5;AC1=1;DP4=7,2,13,4;MQ=59;FQ=140;PV4=1,1,0.24,1 GT:PL:GQ 0/1:255,0,167:99 chr3 124114068 . G A 126 . DP=66;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,12,20,10;MQ=60;FQ=129;PV4=0.79,2.3e-21,1,1 GT:PL:GQ 0/1:156,0,255:99 chr3 124128938 . A G 205 . DP=41;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,30,10;MQ=59;FQ=-147 GT:PL:GQ 1/1:238,120,0:99 chr3 124165217 . G A 84 . DP=29;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,11,3,13;MQ=59;FQ=87;PV4=0.61,1.1e-15,1,0.32 GT:PL:GQ 0/1:114,0,182:99 chr3 124195987 . T C 35.8 . DP=3;VDB=0.0050;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:67,6,0:10 chr3 124210344 . C A 100 . DP=31;VDB=0.0399;AF1=0.5;AC1=1;DP4=0,11,6,14;MQ=60;FQ=103;PV4=0.066,3.2e-10,1,0.038 GT:PL:GQ 0/1:130,0,140:99 chr3 124303786 . G C 144 . DP=24;VDB=0.0216;AF1=0.5;AC1=1;DP4=5,9,5,4;MQ=60;FQ=147;PV4=0.42,0.08,1,1 GT:PL:GQ 0/1:174,0,255:99 chr3 124351316 . G A 191 . DP=104;VDB=0.0399;AF1=0.5;AC1=1;DP4=23,24,28,27;MQ=60;FQ=194;PV4=1,3.3e-18,0.18,0.074 GT:PL:GQ 0/1:221,0,255:99 chr3 124351424 . T C 154 . DP=70;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,19,11,19;MQ=59;FQ=157;PV4=0.33,7.2e-18,0.21,0.15 GT:PL:GQ 0/1:184,0,255:99 chr3 124352573 . A G 14.2 . DP=11;VDB=0.0033;AF1=0.5;AC1=1;DP4=7,0,4,0;MQ=60;FQ=17.1;PV4=1,0.0003,1,0.042 GT:PL:GQ 0/1:44,0,142:47 chr3 124369640 . T TA 98.5 . INDEL;DP=55;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,14,11,15;MQ=60;FQ=99.4;PV4=0.78,1,0.16,0.43 GT:PL:GQ 0/1:136,0,138:99 chr3 124369744 . C T 36 . DP=22;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,10,2,6;MQ=59;FQ=39;PV4=1,3.9e-07,1,1 GT:PL:GQ 0/1:66,0,241:69 chr3 124377179 . C G 23 . DP=5;VDB=0.0041;AF1=0.5006;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-3.54;PV4=1,0.00012,1,1 GT:PL:GQ 0/1:53,0,26:29 chr3 124379748 . G C 107 . DP=60;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,2,33,5;MQ=60;FQ=110;PV4=1,6.5e-25,1,1 GT:PL:GQ 0/1:137,0,201:99 chr3 124379817 . T C 185 . DP=88;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,15,21,30;MQ=60;FQ=188;PV4=0.13,5.5e-28,1,1 GT:PL:GQ 0/1:215,0,255:99 chr3 124396338 . T G 54 . DP=37;VDB=0.0298;AF1=0.5;AC1=1;DP4=14,8,11,3;MQ=60;FQ=57;PV4=0.47,1.3e-09,1,1 GT:PL:GQ 0/1:84,0,255:87 chr3 124412691 . G T 99 . DP=23;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,11,1,5;MQ=60;FQ=102;PV4=0.63,1,1,1 GT:PL:GQ 0/1:129,0,255:99 chr3 124418879 . T C 112 . DP=12;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,4,0,7;MQ=60;FQ=56;PV4=1,1,1,1 GT:PL:GQ 0/1:142,0,83:86 chr3 124438329 . C T 51 . DP=35;VDB=0.0271;AF1=0.5;AC1=1;DP4=1,16,1,15;MQ=60;FQ=54;PV4=1,3.4e-11,1,1 GT:PL:GQ 0/1:81,0,207:84 chr3 124449252 . T C 25.8 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:57,6,0:10 chr3 124449291 . A G 26 . DP=10;VDB=0.0199;AF1=0.5;AC1=1;DP4=6,0,4,0;MQ=60;FQ=29;PV4=1,0.00058,1,1 GT:PL:GQ 0/1:56,0,120:59 chr3 124450284 . G T 4.13 . DP=6;VDB=0.0106;AF1=0.4998;AC1=1;DP4=2,2,1,1;MQ=60;FQ=6.2;PV4=1,0.09,1,1 GT:PL:GQ 0/1:32,0,112:31 chr3 124451312 . T G 117 . DP=140;VDB=0.0392;AF1=0.5;AC1=1;DP4=51,17,53,12;MQ=60;FQ=120;PV4=0.41,2.4e-62,1,1 GT:PL:GQ 0/1:147,0,255:99 chr3 124456742 . G C 182 . DP=109;VDB=0.0398;AF1=0.5;AC1=1;DP4=23,33,26,24;MQ=60;FQ=185;PV4=0.33,1.1e-37,0.15,0.29 GT:PL:GQ 0/1:212,0,255:99 chr3 124458816 . C G 76 . DP=19;VDB=0.0190;AF1=0.5;AC1=1;DP4=8,0,9,1;MQ=60;FQ=79;PV4=1,3.9e-14,1,0.025 GT:PL:GQ 0/1:106,0,147:99 chr3 124462808 . C T 225 . DP=160;VDB=0.0365;AF1=0.5;AC1=1;DP4=39,40,51,27;MQ=60;FQ=225;PV4=0.053,0.4,0.5,1 GT:PL:GQ 0/1:255,0,255:99 chr3 124483190 . G A 225 . DP=58;VDB=0.0216;AF1=0.5;AC1=1;DP4=28,5,15,8;MQ=60;FQ=225;PV4=0.11,0.2,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 124485235 . A G 113 . DP=40;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,19,4,13;MQ=59;FQ=116;PV4=0.68,9e-12,0.13,0.27 GT:PL:GQ 0/1:143,0,255:99 chr3 124487849 . A G 49 . DP=10;VDB=0.0359;AF1=0.5;AC1=1;DP4=4,1,4,1;MQ=60;FQ=52;PV4=1,9.6e-05,1,0.36 GT:PL:GQ 0/1:79,0,126:82 chr3 124515308 . A G 156 . DP=134;VDB=0.0380;AF1=0.5;AC1=1;DP4=35,30,37,28;MQ=59;FQ=159;PV4=0.86,2e-39,1,0.46 GT:PL:GQ 0/1:186,0,255:99 chr3 124515509 . G A 173 . DP=26;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,6,4,8;MQ=60;FQ=176;PV4=0.68,0.063,1,1 GT:PL:GQ 0/1:203,0,235:99 chr3 124538764 . C A 77 . DP=35;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,19,1,15;MQ=60;FQ=80;PV4=0.46,1.8e-08,1,0.48 GT:PL:GQ 0/1:107,0,179:99 chr3 124627024 . T G 112 . DP=38;VDB=0.0216;AF1=0.5;AC1=1;DP4=15,1,19,2;MQ=60;FQ=115;PV4=1,1.9e-12,1,1 GT:PL:GQ 0/1:142,0,184:99 chr3 124632127 . A G 93 . DP=21;VDB=0.0343;AF1=0.5;AC1=1;DP4=2,7,2,10;MQ=59;FQ=96;PV4=1,2.6e-08,1,1 GT:PL:GQ 0/1:123,0,171:99 chr3 124635404 . G A 21 . DP=13;VDB=0.0384;AF1=0.5;AC1=1;DP4=0,8,1,3;MQ=58;FQ=24;PV4=0.33,1.7e-07,1,1 GT:PL:GQ 0/1:51,0,137:54 chr3 124635444 . A G 52 . DP=7;VDB=0.0156;AF1=0.5;AC1=1;DP4=0,4,1,2;MQ=57;FQ=54.8;PV4=0.43,0.14,1,1 GT:PL:GQ 0/1:82,0,95:85 chr3 124646705 . AAAG AAAGAAG 214 . INDEL;DP=97;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,33,55;MQ=55;FQ=-290 GT:PL:GQ 1/1:255,255,0:99 chr3 124653710 . A G 126 . DP=18;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,2,16;MQ=60;FQ=-81 GT:PL:GQ 1/1:159,54,0:99 chr3 124728472 . C G 86 . DP=26;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,26,0;MQ=60;FQ=-105 GT:PL:GQ 1/1:119,78,0:99 chr3 124728626 . A G 222 . DP=92;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,31,59;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 124729193 . T G 87 . DP=12;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:120,36,0:69 chr3 124731485 . C G 222 . DP=76;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,34,37;MQ=60;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr3 124732618 . A G 159 . DP=120;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,46,68;MQ=59;FQ=-282 GT:PL:GQ 1/1:192,255,0:99 chr3 124732842 . C A 60 . DP=36;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,35;MQ=59;FQ=-132 GT:PL:GQ 1/1:93,105,0:99 chr3 124733649 . T G 186 . DP=39;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,24,14;MQ=59;FQ=-141 GT:PL:GQ 1/1:219,114,0:99 chr3 124738107 . C T 222 . DP=109;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,68,36;MQ=59;FQ=-282;PV4=1,0.0033,0.43,1 GT:PL:GQ 1/1:255,255,0:99 chr3 124739892 . G A 222 . DP=67;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,19,45;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr3 124746049 . A G 132 . DP=7;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,5,1;MQ=60;FQ=-45 GT:PL:GQ 1/1:165,18,0:33 chr3 124746182 . C A 215 . DP=66;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,46,15;MQ=60;FQ=-211 GT:PL:GQ 1/1:248,184,0:99 chr3 124746347 . T C 222 . DP=61;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,15,43;MQ=59;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr3 124748226 . G A 222 . DP=38;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,22,13;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr3 124837684 . T C 222 . DP=15;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,6,7;MQ=60;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr3 124839470 . G A 194 . DP=120;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,50,68;MQ=60;FQ=-282 GT:PL:GQ 1/1:227,255,0:99 chr3 124870413 . A G 22 . DP=14;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,7,0,6;MQ=54;FQ=25;PV4=1,1.2e-06,0.017,0.17 GT:PL:GQ 0/1:52,0,136:55 chr3 124896861 . C G 105 . DP=30;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,2,27;MQ=60;FQ=-114 GT:PL:GQ 1/1:138,87,0:99 chr3 124951821 . C T 222 . DP=134;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,66,65;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 124998098 . CAAAAAAAAAAA CAAAAAAAAAAAAAA,CAAAAAAAAAAAAAAA 89.5 . INDEL;DP=16;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,1,9;MQ=53;FQ=-58.5 GT:PL:GQ 1/1:161,55,31,123,0,117:45 chr3 125179732 . CATA CATAAATA 164 . INDEL;DP=7;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,4;MQ=50;FQ=-49.5 GT:PL:GQ 1/1:204,15,0:27 chr3 125216130 . G T 63 . DP=26;VDB=0.0345;AF1=0.5;AC1=1;DP4=12,5,6,2;MQ=60;FQ=66;PV4=1,8.9e-07,1,1 GT:PL:GQ 0/1:93,0,255:96 chr3 125223456 . C T 153 . DP=52;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,34,14;MQ=60;FQ=-171 GT:PL:GQ 1/1:186,144,0:99 chr3 125270985 . gtatatatatatatatatata gtatatatatatatata 215 . INDEL;DP=7;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,5,2;MQ=60;FQ=-55.5 GT:PL:GQ 1/1:255,21,0:39 chr3 125301711 . C G 202 . DP=34;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,24,9;MQ=60;FQ=-126 GT:PL:GQ 1/1:235,99,0:99 chr3 125726048 . G C 203 . DP=23;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,15;MQ=60;FQ=-96 GT:PL:GQ 1/1:236,69,0:99 chr3 125734272 . G A 79 . DP=9;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,9,0;MQ=57;FQ=-54 GT:PL:GQ 1/1:112,27,0:51 chr3 125734465 . G A 222 . DP=64;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,14,44;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr3 125741592 . C T 222 . DP=17;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,5;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr3 125741901 . A G 133 . DP=10;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:166,30,0:57 chr3 125745433 . C T 7.59 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr3 125775228 . T C 195 . DP=26;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,19,6;MQ=60;FQ=-102 GT:PL:GQ 1/1:228,75,0:99 chr3 125786879 . T C 222 . DP=56;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,28,27;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr3 125824382 . C A 85 . DP=21;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,18,2;MQ=59;FQ=-87 GT:PL:GQ 1/1:118,60,0:99 chr3 125843400 . AG AGG 188 . INDEL;DP=11;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,1,9;MQ=60;FQ=-64.5 GT:PL:GQ 1/1:229,30,0:57 chr3 125844718 . G A 137 . DP=9;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:170,21,0:39 chr3 125848945 . T C 101 . DP=6;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:134,15,0:27 chr3 125849031 . C T 165 . DP=15;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,9,5;MQ=58;FQ=-69 GT:PL:GQ 1/1:198,42,0:81 chr3 125849238 . G A 207 . DP=23;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,15;MQ=60;FQ=-96 GT:PL:GQ 1/1:240,69,0:99 chr3 125850169 . T C 95 . DP=27;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,24,2;MQ=59;FQ=-105 GT:PL:GQ 1/1:128,78,0:99 chr3 125850193 . A G 222 . DP=41;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,25,13;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr3 125850381 . A G 124 . DP=21;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,20;MQ=60;FQ=-90 GT:PL:GQ 1/1:157,63,0:99 chr3 125850434 . C T 30.5 . DP=5;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:63,12,0:21 chr3 125854311 . TCCCCCCC TCCCCCC 60.5 . INDEL;DP=36;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,7,5;MQ=56;FQ=-70.5 GT:PL:GQ 1/1:101,36,0:69 chr3 125874388 . C T 66 . DP=14;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,1,10;MQ=60;FQ=-60 GT:PL:GQ 1/1:99,33,0:63 chr3 126138778 . T C 222 . DP=24;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,11,11;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr3 126142496 . T C 135 . DP=31;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,11,4,12;MQ=60;FQ=138;PV4=1,5.4e-08,1,1 GT:PL:GQ 0/1:165,0,215:99 chr3 126157464 . TG TGG 123 . INDEL;DP=24;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,11,1,9;MQ=60;FQ=126;PV4=1,1,1,0.029 GT:PL:GQ 0/1:161,0,170:99 chr3 126158622 . A C 33 . DP=37;VDB=0.0066;AF1=0.5;AC1=1;DP4=12,15,4,6;MQ=60;FQ=36;PV4=1,9.8e-09,1,1 GT:PL:GQ 0/1:63,0,255:66 chr3 126169091 . T C 222 . DP=47;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,37,10;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr3 126169230 . C T 222 . DP=62;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,26,34;MQ=59;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr3 126169472 . T C 71.1 . DP=7;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:104,18,0:33 chr3 126181071 . A C 12.3 . DP=15;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,5,0,8;MQ=56;FQ=15.1;PV4=1,1.3e-08,1,0.028 GT:PL:GQ 0/1:42,0,109:44 chr3 126185238 . C T 78 . DP=51;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,17,4,23;MQ=60;FQ=81;PV4=0.72,8.7e-22,1,0.25 GT:PL:GQ 0/1:108,0,255:99 chr3 126185265 . ATTTT ATTTTT 96.5 . INDEL;DP=35;VDB=0.0164;AF1=0.5;AC1=1;DP4=3,9,2,17;MQ=60;FQ=85.3;PV4=0.35,1,1,1 GT:PL:GQ 0/1:134,0,120:99 chr3 126189919 . A G 141 . DP=48;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,17,6,17;MQ=60;FQ=144;PV4=1,5.2e-17,1,1 GT:PL:GQ 0/1:171,0,255:99 chr3 126194076 . T C 225 . DP=47;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,15,7,13;MQ=59;FQ=225;PV4=1,1,1,0.4 GT:PL:GQ 0/1:255,0,255:99 chr3 126194357 . G C 43.1 . DP=8;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:76,21,0:39 chr3 126202147 . G A 156 . DP=58;VDB=0.0380;AF1=0.5;AC1=1;DP4=31,4,21,1;MQ=60;FQ=159;PV4=0.64,0.14,1,0.42 GT:PL:GQ 0/1:186,0,255:99 chr3 126202257 . G A 201 . DP=113;VDB=0.0345;AF1=0.5;AC1=1;DP4=23,28,22,38;MQ=59;FQ=204;PV4=0.44,1.4e-20,0.33,1 GT:PL:GQ 0/1:231,0,255:99 chr3 126208249 . A C 12.3 . DP=15;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,9,0,6;MQ=60;FQ=15.1;PV4=1,0.00014,1,0.16 GT:PL:GQ 0/1:42,0,154:44 chr3 126211479 . CCT CCTCTCT 217 . INDEL;DP=17;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,4,3,8;MQ=57;FQ=112;PV4=0.52,1,0.2,0.23 GT:PL:GQ 0/1:255,0,147:99 chr3 126216829 . T A 103 . DP=28;VDB=0.0392;AF1=0.5;AC1=1;DP4=11,5,9,0;MQ=60;FQ=106;PV4=0.12,1,1,1 GT:PL:GQ 0/1:133,0,254:99 chr3 126218159 . T A 181 . DP=20;VDB=0.0216;AF1=0.5;AC1=1;DP4=3,3,10,2;MQ=60;FQ=97;PV4=0.27,1,1,1 GT:PL:GQ 0/1:211,0,124:99 chr3 126218788 . T C 6.02 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr3 126219030 . T C 222 . DP=33;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,28;MQ=59;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr3 126219086 . A G 178 . DP=9;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,1,8;MQ=60;FQ=-54 GT:PL:GQ 1/1:211,27,0:51 chr3 126219627 . G A 225 . DP=64;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,20,9,23;MQ=59;FQ=225;PV4=1,1,0.047,1 GT:PL:GQ 0/1:255,0,255:99 chr3 126219973 . T C 56 . DP=8;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:89,24,0:45 chr3 126220539 . A G 3.52 . DP=8;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:33,9,0:7 chr3 126220845 . G A 44 . DP=10;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:77,30,0:57 chr3 126226518 . C T 136 . DP=65;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,49,11;MQ=60;FQ=-208 GT:PL:GQ 1/1:169,181,0:99 chr3 126227185 . G A 222 . DP=27;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,19,7;MQ=59;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr3 126228410 . G A 219 . DP=37;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,21,13;MQ=60;FQ=-129 GT:PL:GQ 1/1:252,102,0:99 chr3 126236348 . T C 198 . DP=19;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,11,7;MQ=60;FQ=-81 GT:PL:GQ 1/1:231,54,0:99 chr3 126268953 . T G 101 . DP=15;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,0,15;MQ=60;FQ=-72 GT:PL:GQ 1/1:134,45,0:87 chr3 126270757 . G T 59.1 . DP=6;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:92,18,0:33 chr3 126328101 . A G 225 . DP=54;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,22,10,14;MQ=60;FQ=225;PV4=0.26,0.04,1,0.16 GT:PL:GQ 0/1:255,0,255:99 chr3 126329910 . A G 222 . DP=71;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,44,27;MQ=60;FQ=-241 GT:PL:GQ 1/1:255,214,0:99 chr3 126340553 . G A 57 . DP=38;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,3,17,2;MQ=60;FQ=60;PV4=1,1.3e-21,1,1 GT:PL:GQ 0/1:87,0,255:90 chr3 126365127 . C CT 114 . INDEL;DP=10;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-64.5 GT:PL:GQ 1/1:155,30,0:57 chr3 126373994 . A G 3.01 . DP=6;VDB=0.0078;AF1=0.4997;AC1=1;DP4=3,1,0,2;MQ=60;FQ=4.77;PV4=0.4,0.37,1,0.47 GT:PL:GQ 0/1:30,0,83:28 chr3 126374855 . A G 6.2 . DP=15;VDB=0.0164;AF1=0.4999;AC1=1;DP4=8,2,5,0;MQ=58;FQ=8.65;PV4=0.52,3.6e-11,0.082,0.43 GT:PL:GQ 0/1:35,0,207:36 chr3 126384945 . C T 91 . DP=22;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,2,11,1;MQ=60;FQ=94;PV4=0.55,0.00044,1,0.45 GT:PL:GQ 0/1:121,0,155:99 chr3 126385891 . C G 64 . DP=22;VDB=0.0003;AF1=0.5;AC1=1;DP4=10,0,10,1;MQ=60;FQ=67;PV4=1,1.2e-08,1,0.15 GT:PL:GQ 0/1:94,0,151:97 chr3 126451805 . G A 89 . DP=14;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,2,6,0;MQ=60;FQ=92;PV4=0.47,1,1,1 GT:PL:GQ 0/1:119,0,181:99 chr3 126451937 . G T 163 . DP=38;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,7,9,13;MQ=59;FQ=166;PV4=0.51,1.3e-09,0.2,0.35 GT:PL:GQ 0/1:193,0,255:99 chr3 126571416 . G A 225 . DP=48;VDB=0.0216;AF1=0.5;AC1=1;DP4=14,12,16,6;MQ=59;FQ=225;PV4=0.24,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 126571679 . C T 6.98 . DP=5;VDB=0.0194;AF1=0.4999;AC1=1;DP4=0,3,1,1;MQ=60;FQ=9.53;PV4=0.4,0.031,1,0.2 GT:PL:GQ 0/1:36,0,73:37 chr3 126633407 . G A 50 . DP=27;VDB=0.0081;AF1=0.5;AC1=1;DP4=13,3,9,1;MQ=59;FQ=53;PV4=1,4.5e-07,0.11,1 GT:PL:GQ 0/1:80,0,251:83 chr3 126633419 . C G 11.3 . DP=38;VDB=0.0164;AF1=0.5;AC1=1;DP4=19,4,13,1;MQ=59;FQ=14.2;PV4=0.63,4.7e-22,0.033,1 GT:PL:GQ 0/1:41,0,255:43 chr3 126645221 . A C 41 . DP=31;VDB=0.0190;AF1=0.5;AC1=1;DP4=2,15,3,7;MQ=60;FQ=44;PV4=0.33,0.00011,1,1 GT:PL:GQ 0/1:71,0,184:74 chr3 126645245 . G A 136 . DP=25;VDB=0.0393;AF1=0.5;AC1=1;DP4=1,14,2,8;MQ=59;FQ=139;PV4=0.54,0.017,0.11,0.14 GT:PL:GQ 0/1:166,0,203:99 chr3 126679121 . G C 186 . DP=34;VDB=0.0384;AF1=0.5;AC1=1;DP4=3,15,3,12;MQ=59;FQ=189;PV4=1,0.19,0.14,1 GT:PL:GQ 0/1:216,0,242:99 chr3 126708453 . T C 222 . DP=76;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,28,44;MQ=59;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr3 126708459 . C T 122 . DP=76;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,22,12,22;MQ=59;FQ=125;PV4=0.81,4.4e-26,1,1 GT:PL:GQ 0/1:152,0,255:99 chr3 126722304 . C T 187 . DP=62;VDB=0.0298;AF1=0.5;AC1=1;DP4=7,22,12,21;MQ=59;FQ=190;PV4=0.41,6e-10,1,1 GT:PL:GQ 0/1:217,0,255:99 chr3 126723549 . C T 138 . DP=15;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,2,2,6;MQ=60;FQ=114;PV4=0.28,0.48,1,1 GT:PL:GQ 0/1:168,0,141:99 chr3 126726705 . A G 201 . DP=44;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,10,8,7;MQ=60;FQ=204;PV4=0.74,1,1,0.38 GT:PL:GQ 0/1:231,0,255:99 chr3 126735453 . C T 175 . DP=130;VDB=0.0216;AF1=0.5;AC1=1;DP4=41,28,43,16;MQ=60;FQ=178;PV4=0.14,7e-25,0.46,1 GT:PL:GQ 0/1:205,0,255:99 chr3 126736821 . C T 36 . DP=9;VDB=0.0017;AF1=0.5;AC1=1;DP4=1,4,1,3;MQ=60;FQ=39;PV4=1,0.00039,1,1 GT:PL:GQ 0/1:66,0,125:69 chr3 126737466 . G A 59 . DP=8;VDB=0.0329;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=61.7;PV4=1,0.077,1,0.12 GT:PL:GQ 0/1:89,0,100:92 chr3 126739291 . T C 69 . DP=17;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,9,1,5;MQ=59;FQ=72;PV4=1,0.044,1,1 GT:PL:GQ 0/1:99,0,197:99 chr3 126741674 . G A 88 . DP=35;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,11,4,12;MQ=58;FQ=91;PV4=0.48,1.3e-17,1,1 GT:PL:GQ 0/1:118,0,255:99 chr3 126741740 . T C 119 . DP=14;VDB=0.0343;AF1=0.5;AC1=1;DP4=0,5,0,9;MQ=60;FQ=73;PV4=1,0.47,1,0.31 GT:PL:GQ 0/1:149,0,100:99 chr3 126746406 . C A 6.02 . DP=2;VDB=0.0192;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:36,6,0:6 chr3 126746690 . A G 201 . DP=38;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,11,26;MQ=59;FQ=-138 GT:PL:GQ 1/1:234,111,0:99 chr3 126747001 . C G 124 . DP=82;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,30,11,33;MQ=60;FQ=127;PV4=0.79,4.5e-27,0.18,0.48 GT:PL:GQ 0/1:154,0,255:99 chr3 126747015 . C T 124 . DP=77;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,29,9,29;MQ=60;FQ=127;PV4=0.78,2.4e-30,0.17,1 GT:PL:GQ 0/1:154,0,255:99 chr3 126751478 . C T 88 . DP=26;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,3,9,3;MQ=60;FQ=91;PV4=1,1.2e-09,1,1 GT:PL:GQ 0/1:118,0,197:99 chr3 126751689 . G A 222 . DP=41;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,8,32;MQ=59;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr3 126880488 . T C 66 . DP=23;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,21,0;MQ=60;FQ=-90 GT:PL:GQ 1/1:99,63,0:99 chr3 127323830 . C T 222 . DP=79;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,55,22;MQ=60;FQ=-259 GT:PL:GQ 1/1:255,232,0:99 chr3 127336934 . A G 222 . DP=73;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,31,42;MQ=59;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr3 127396220 . T C 91 . DP=12;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,11,1;MQ=60;FQ=-63 GT:PL:GQ 1/1:124,36,0:69 chr3 127429567 . C G 151 . DP=40;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,14,7,17;MQ=60;FQ=154;PV4=0.27,5e-12,1,0.077 GT:PL:GQ 0/1:181,0,218:99 chr3 127434580 . G A 225 . DP=65;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,10,21,12;MQ=60;FQ=225;PV4=1,1,1,0.45 GT:PL:GQ 0/1:255,0,255:99 chr3 127440083 . A C 47 . DP=12;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,4,0,6;MQ=60;FQ=49.9;PV4=1,5.6e-05,1,1 GT:PL:GQ 0/1:77,0,92:80 chr3 127641968 . C A 192 . DP=43;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,35,7;MQ=60;FQ=-153 GT:PL:GQ 1/1:225,126,0:99 chr3 127983495 . T C 183 . DP=72;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,42,28;MQ=60;FQ=-238 GT:PL:GQ 1/1:216,211,0:99 chr3 128181537 . C T 225 . DP=63;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,15,16,20;MQ=59;FQ=225;PV4=0.8,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 128181777 . A G 86 . DP=82;VDB=0.0322;AF1=0.5;AC1=1;DP4=30,12,30,8;MQ=59;FQ=89;PV4=0.61,9.2e-26,1,1 GT:PL:GQ 0/1:116,0,255:99 chr3 128182074 . G A 188 . DP=44;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,21,3,14;MQ=59;FQ=191;PV4=1,0.24,1,1 GT:PL:GQ 0/1:218,0,255:99 chr3 128200072 . C T 175 . DP=148;VDB=0.0365;AF1=0.5;AC1=1;DP4=41,37,37,31;MQ=60;FQ=178;PV4=0.87,6.4e-32,1,1 GT:PL:GQ 0/1:205,0,255:99 chr3 128205860 . G C 98 . DP=27;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,23;MQ=60;FQ=-102 GT:PL:GQ 1/1:131,75,0:99 chr3 128292213 . A G 152 . DP=63;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,14,13,15;MQ=59;FQ=155;PV4=0.61,8.9e-18,0.46,0.37 GT:PL:GQ 0/1:182,0,255:99 chr3 128350768 . T C 225 . DP=48;VDB=0.0140;AF1=0.5;AC1=1;DP4=15,2,27,3;MQ=60;FQ=181;PV4=1,1,0.23,1 GT:PL:GQ 0/1:255,0,208:99 chr3 128580574 . T C 222 . DP=24;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,18,6;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr3 128580585 . C A 84 . DP=27;VDB=0.0190;AF1=0.5;AC1=1;DP4=11,3,8,4;MQ=59;FQ=87;PV4=0.67,4e-11,0.14,0.39 GT:PL:GQ 0/1:114,0,240:99 chr3 128612659 . G C 41 . DP=14;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,6,2,6;MQ=60;FQ=44;PV4=0.47,7.7e-07,1,0.38 GT:PL:GQ 0/1:71,0,124:74 chr3 128614133 . C T 222 . DP=68;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,51,13;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr3 128614185 . A C 159 . DP=98;VDB=0.0398;AF1=0.5;AC1=1;DP4=38,21,18,20;MQ=60;FQ=162;PV4=0.14,3.7e-26,0.038,0.29 GT:PL:GQ 0/1:189,0,255:99 chr3 128616325 . C T 222 . DP=24;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,19,4;MQ=59;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr3 128616359 . C G 225 . DP=59;VDB=0.0042;AF1=0.5;AC1=1;DP4=22,5,26,6;MQ=59;FQ=225;PV4=1,1,0.33,1 GT:PL:GQ 0/1:255,0,255:99 chr3 128622742 . G A 31 . DP=10;VDB=0.0006;AF1=0.5;AC1=1;DP4=2,0,7,0;MQ=60;FQ=21.8;PV4=1,3.2e-07,1,0.17 GT:PL:GQ 0/1:61,0,49:52 chr3 128626952 . T C 25 . DP=23;VDB=0.0081;AF1=0.5;AC1=1;DP4=14,0,9,0;MQ=60;FQ=28;PV4=1,3.4e-13,1,1 GT:PL:GQ 0/1:55,0,174:58 chr3 128627021 . A G 158 . DP=62;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,5,20,8;MQ=60;FQ=161;PV4=0.35,1.1e-14,1,1 GT:PL:GQ 0/1:188,0,255:99 chr3 128627259 . T C 52 . DP=8;VDB=0.0060;AF1=0.5;AC1=1;DP4=0,5,0,3;MQ=57;FQ=55;PV4=1,1,1,1 GT:PL:GQ 0/1:82,0,101:85 chr3 128627753 . T C 117 . DP=21;VDB=0.0042;AF1=0.5;AC1=1;DP4=10,1,10,0;MQ=60;FQ=120;PV4=1,0.19,1,0.19 GT:PL:GQ 0/1:147,0,182:99 chr3 128627933 . C T 143 . DP=126;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,35,31,31;MQ=60;FQ=146;PV4=0.47,1.5e-39,1,1 GT:PL:GQ 0/1:173,0,255:99 chr3 128629505 . CTGAT CTGATTGAT 217 . INDEL;DP=42;VDB=0.0322;AF1=0.5;AC1=1;DP4=17,6,16,3;MQ=57;FQ=217;PV4=0.48,1,0.0039,0.11 GT:PL:GQ 0/1:255,0,255:99 chr3 128663991 . G A 83 . DP=26;VDB=0.0343;AF1=0.5;AC1=1;DP4=8,10,3,3;MQ=59;FQ=86;PV4=1,1,1,1 GT:PL:GQ 0/1:113,0,255:99 chr3 128664549 . G T 150 . DP=75;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,21,13,20;MQ=60;FQ=153;PV4=0.64,2.8e-14,1,0.43 GT:PL:GQ 0/1:180,0,255:99 chr3 128720487 . A G 151 . DP=11;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:184,27,0:51 chr3 128755814 . T C 147 . DP=70;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,31,35;MQ=59;FQ=-226 GT:PL:GQ 1/1:180,199,0:99 chr3 128755953 . G A 60 . DP=16;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,5,0,9;MQ=57;FQ=63;PV4=0.4,1.3e-07,1,0.33 GT:PL:GQ 0/1:90,0,141:93 chr3 128755971 . G A 50 . DP=14;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,5,0,8;MQ=57;FQ=53;PV4=0.43,0.00059,1,1 GT:PL:GQ 0/1:80,0,131:83 chr3 128853622 . C G 194 . DP=27;VDB=0.0099;AF1=0.5;AC1=1;DP4=11,0,14,2;MQ=60;FQ=123;PV4=0.5,0.38,1,1 GT:PL:GQ 0/1:224,0,150:99 chr3 128859202 . CTTA CTTAGTTA 217 . INDEL;DP=88;VDB=0.0164;AF1=0.5;AC1=1;DP4=48,7,28,5;MQ=58;FQ=217;PV4=0.76,1,0.0032,1 GT:PL:GQ 0/1:255,0,255:99 chr3 128864520 . C G 84 . DP=23;VDB=0.0384;AF1=0.5;AC1=1;DP4=9,2,8,3;MQ=59;FQ=87;PV4=1,2.3e-07,0.16,0.39 GT:PL:GQ 0/1:114,0,198:99 chr3 128864540 . A G 95 . DP=29;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,2,10,4;MQ=60;FQ=98;PV4=0.65,3e-10,1,0.48 GT:PL:GQ 0/1:125,0,220:99 chr3 128877521 . C T 12.3 . DP=10;VDB=0.0149;AF1=0.5;AC1=1;DP4=0,7,0,2;MQ=60;FQ=15.1;PV4=1,0.41,1,1 GT:PL:GQ 0/1:42,0,142:44 chr3 128890350 . G A 225 . DP=149;VDB=0.0365;AF1=0.5;AC1=1;DP4=27,40,32,49;MQ=60;FQ=225;PV4=1,0.35,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 128968642 . T C 97 . DP=29;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,6,6,9;MQ=57;FQ=100;PV4=0.71,4.7e-12,0.047,1 GT:PL:GQ 0/1:127,0,227:99 chr3 128971113 . T C 147 . DP=192;VDB=0.0322;AF1=0.5;AC1=1;DP4=48,41,50,45;MQ=60;FQ=150;PV4=0.88,5.1e-61,1,1 GT:PL:GQ 0/1:177,0,255:99 chr3 128973978 . A C 54 . DP=33;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,16,0,16;MQ=60;FQ=57;PV4=1,3.7e-12,1,1 GT:PL:GQ 0/1:84,0,175:87 chr3 128976396 . T C 225 . DP=82;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,16,24,18;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 128976451 . C G 184 . DP=86;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,22,21,21;MQ=60;FQ=187;PV4=0.67,5.6e-23,1,0.26 GT:PL:GQ 0/1:214,0,255:99 chr3 128979256 . C G 175 . DP=109;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,33,20,36;MQ=60;FQ=178;PV4=0.84,1.1e-30,1,1 GT:PL:GQ 0/1:205,0,255:99 chr3 128986715 . A C 7.8 . DP=13;VDB=0.0011;AF1=0.5;AC1=1;DP4=8,0,4,0;MQ=60;FQ=10.4;PV4=1,9e-06,1,1 GT:PL:GQ 0/1:37,0,149:39 chr3 128987730 . G A 225 . DP=82;VDB=0.0392;AF1=0.5;AC1=1;DP4=24,16,30,10;MQ=60;FQ=225;PV4=0.23,0.056,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr3 128987899 . T A 57 . DP=26;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,15,1,8;MQ=60;FQ=60;PV4=1,1.9e-08,1,0.34 GT:PL:GQ 0/1:87,0,214:90 chr3 128990998 . T C 122 . DP=17;VDB=0.0066;AF1=0.5;AC1=1;DP4=7,1,9,0;MQ=60;FQ=123;PV4=0.47,1,1,1 GT:PL:GQ 0/1:152,0,155:99 chr3 129020778 . A G 65 . DP=53;VDB=0.0365;AF1=0.5;AC1=1;DP4=29,1,22,1;MQ=60;FQ=68;PV4=1,1.1e-17,1,0.42 GT:PL:GQ 0/1:95,0,214:98 chr3 129034758 . A G 6.2 . DP=13;VDB=0.0398;AF1=0.4999;AC1=1;DP4=0,8,0,3;MQ=58;FQ=8.65;PV4=1,0.043,1,1 GT:PL:GQ 0/1:35,0,132:36 chr3 129100228 . T C 179 . DP=84;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,23,19,27;MQ=58;FQ=182;PV4=0.65,5.3e-26,1,1 GT:PL:GQ 0/1:209,0,255:99 chr3 129100288 . A G 175 . DP=31;VDB=0.0099;AF1=0.5;AC1=1;DP4=4,15,2,10;MQ=59;FQ=178;PV4=1,1,0.11,1 GT:PL:GQ 0/1:205,0,255:99 chr3 129120743 . A G 36 . DP=19;VDB=0.0053;AF1=0.5;AC1=1;DP4=4,8,3,4;MQ=60;FQ=39;PV4=1,3.1e-09,1,0.34 GT:PL:GQ 0/1:66,0,242:69 chr3 129130018 . G A 82 . DP=14;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,2,6,0;MQ=58;FQ=85;PV4=0.47,1,0.13,0.26 GT:PL:GQ 0/1:112,0,169:99 chr3 129137025 . G A 59 . DP=10;VDB=0.0053;AF1=0.5;AC1=1;DP4=3,1,3,3;MQ=60;FQ=54.2;PV4=0.57,0.0072,1,0.39 GT:PL:GQ 0/1:89,0,82:84 chr3 129140489 . T C 225 . DP=58;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,7,25,6;MQ=60;FQ=225;PV4=0.54,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 129140738 . A T 45 . DP=17;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,10,0,7;MQ=60;FQ=48;PV4=1,2.6e-05,1,1 GT:PL:GQ 0/1:75,0,150:78 chr3 129147418 . G A 94 . DP=66;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,25,3,27;MQ=59;FQ=97;PV4=0.12,1.7e-23,0.46,0.12 GT:PL:GQ 0/1:124,0,255:99 chr3 129151927 . G A 225 . DP=70;VDB=0.0345;AF1=0.5;AC1=1;DP4=27,6,24,10;MQ=59;FQ=225;PV4=0.39,0.25,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr3 129152089 . G A 225 . DP=61;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,27,6,21;MQ=59;FQ=225;PV4=1,0.0055,0.44,0.29 GT:PL:GQ 0/1:255,0,255:99 chr3 129152144 . T C 219 . DP=24;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,22;MQ=60;FQ=-96 GT:PL:GQ 1/1:252,69,0:99 chr3 129153036 . G C 122 . DP=13;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,5,0,8;MQ=60;FQ=79;PV4=1,1,1,1 GT:PL:GQ 0/1:152,0,106:99 chr3 129155670 . C T 225 . DP=153;VDB=0.0392;AF1=0.5;AC1=1;DP4=34,50,27,39;MQ=60;FQ=225;PV4=1,0.013,0.43,1 GT:PL:GQ 0/1:255,0,255:99 chr3 129156536 . A G 225 . DP=184;VDB=0.0322;AF1=0.5;AC1=1;DP4=59,35,64,25;MQ=60;FQ=225;PV4=0.21,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 129177346 . C T 84 . DP=24;VDB=0.0099;AF1=0.5;AC1=1;DP4=9,0,14,1;MQ=60;FQ=87;PV4=1,4e-12,1,0.023 GT:PL:GQ 0/1:114,0,143:99 chr3 129179623 . C CTG 211 . INDEL;DP=20;VDB=0.0053;AF1=0.5;AC1=1;DP4=9,1,10,0;MQ=59;FQ=214;PV4=1,1,0.17,0.22 GT:PL:GQ 0/1:249,0,255:99 chr3 129182588 . T C 150 . DP=25;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,12,1,11;MQ=59;FQ=140;PV4=1,0.065,1,1 GT:PL:GQ 0/1:180,0,167:99 chr3 129185661 . C A 61.1 . DP=6;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:94,18,0:33 chr3 129185924 . G A 25 . DP=7;VDB=0.0218;AF1=0.5;AC1=1;DP4=0,3,0,4;MQ=60;FQ=28;PV4=1,0.0005,1,0.28 GT:PL:GQ 0/1:55,0,82:58 chr3 129188325 . G A 27 . DP=5;VDB=0.0188;AF1=0.5;AC1=1;DP4=0,3,0,2;MQ=60;FQ=30;PV4=1,1,1,1 GT:PL:GQ 0/1:57,0,79:60 chr3 129195448 . TGGGGG TGGGG 37.5 . INDEL;DP=29;VDB=0.0164;AF1=0.5;AC1=1;DP4=8,10,8,3;MQ=60;FQ=40.5;PV4=0.25,2.5e-09,1,1 GT:PL:GQ 0/1:75,0,134:78 chr3 129202316 . C T 126 . DP=48;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,9,15,11;MQ=60;FQ=129;PV4=1,8e-19,1,1 GT:PL:GQ 0/1:156,0,255:99 chr3 129207309 . C G 19.1 . DP=16;VDB=0.0011;AF1=0.5;AC1=1;DP4=1,9,0,6;MQ=48;FQ=22;PV4=1,1e-07,2.4e-07,0.29 GT:PL:GQ 0/1:49,0,186:52 chr3 129210977 . G C 102 . DP=166;VDB=0.0345;AF1=0.5;AC1=1;DP4=44,46,37,37;MQ=60;FQ=105;PV4=1,2.4e-68,1,1 GT:PL:GQ 0/1:132,0,255:99 chr3 129214302 . G A 109 . DP=55;VDB=0.0392;AF1=0.5;AC1=1;DP4=21,3,20,7;MQ=57;FQ=112;PV4=0.3,4.9e-25,1,1 GT:PL:GQ 0/1:139,0,253:99 chr3 129214511 . G A 5.46 . DP=4;VDB=0.0174;AF1=0.4999;AC1=1;DP4=0,2,0,2;MQ=60;FQ=7.76;PV4=1,0.12,1,1 GT:PL:GQ 0/1:34,0,53:34 chr3 129218944 . G T 12.3 . DP=31;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,12,1,16;MQ=60;FQ=15.1;PV4=1,1.1e-24,1,1 GT:PL:GQ 0/1:42,0,198:44 chr3 129247551 . A G 145 . DP=32;VDB=0.0216;AF1=0.5;AC1=1;DP4=16,0,16,0;MQ=60;FQ=145;PV4=1,1,1,0.35 GT:PL:GQ 0/1:175,0,175:99 chr3 129251263 . C T 225 . DP=67;VDB=0.0365;AF1=0.5;AC1=1;DP4=13,14,16,19;MQ=59;FQ=225;PV4=1,1,0.11,1 GT:PL:GQ 0/1:255,0,255:99 chr3 129252604 . C A 25 . DP=9;VDB=0.0070;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=60;FQ=28;PV4=1,2.4e-05,1,0.14 GT:PL:GQ 0/1:55,0,120:58 chr3 129274363 . G A 17.1 . DP=8;VDB=0.0276;AF1=0.5;AC1=1;DP4=2,2,1,2;MQ=60;FQ=20.1;PV4=1,0.02,1,0.12 GT:PL:GQ 0/1:47,0,112:50 chr3 129274456 . C T 27 . DP=8;VDB=0.0220;AF1=0.5;AC1=1;DP4=3,2,1,2;MQ=60;FQ=30;PV4=1,0.0059,1,1 GT:PL:GQ 0/1:57,0,139:60 chr3 129275206 . C T 110 . DP=83;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,30,8,27;MQ=59;FQ=113;PV4=0.45,2.6e-32,1,0.18 GT:PL:GQ 0/1:140,0,255:99 chr3 129277481 . T C 63 . DP=24;VDB=0.0373;AF1=0.5;AC1=1;DP4=2,9,0,12;MQ=60;FQ=66;PV4=0.22,0.00013,1,1 GT:PL:GQ 0/1:93,0,180:96 chr3 129278446 . GCCCCCCC GCCCCCC 10.9 . INDEL;DP=19;VDB=0.0244;AF1=0.502;AC1=1;DP4=7,0,9,2;MQ=60;FQ=-13.7;PV4=0.5,0.0019,1,0.27 GT:PL:GQ 0/1:48,0,21:25 chr3 129279570 . T C 225 . DP=54;VDB=0.0322;AF1=0.5;AC1=1;DP4=24,3,22,3;MQ=60;FQ=224;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,253:99 chr3 129279597 . C T 222 . DP=76;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,55,19;MQ=59;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr3 129281866 . G C 94 . DP=17;VDB=0.0373;AF1=0.5;AC1=1;DP4=5,1,0,8;MQ=58;FQ=96.6;PV4=0.003,0.13,0.2,1 GT:PL:GQ 0/1:124,0,134:99 chr3 129281980 . C T 210 . DP=24;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,8;MQ=60;FQ=-96 GT:PL:GQ 1/1:243,69,0:99 chr3 129284415 . G T 111 . DP=35;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,9,4,16;MQ=60;FQ=114;PV4=0.44,2.6e-13,1,1 GT:PL:GQ 0/1:141,0,242:99 chr3 129284818 . A C 191 . DP=58;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,13,17,15;MQ=60;FQ=194;PV4=1,3.9e-14,1,0.087 GT:PL:GQ 0/1:221,0,255:99 chr3 129286413 . G C 225 . DP=102;VDB=0.0398;AF1=0.5;AC1=1;DP4=30,18,30,23;MQ=60;FQ=225;PV4=0.69,0.043,0.089,0.23 GT:PL:GQ 0/1:255,0,255:99 chr3 129286531 . C A 137 . DP=123;VDB=0.0398;AF1=0.5;AC1=1;DP4=29,35,27,26;MQ=60;FQ=140;PV4=0.58,3.5e-39,1,0.3 GT:PL:GQ 0/1:167,0,255:99 chr3 129286635 . G A 88 . DP=67;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,29,6,24;MQ=60;FQ=91;PV4=1,2e-30,1,1 GT:PL:GQ 0/1:118,0,255:99 chr3 129289831 . A G 169 . DP=92;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,24,10,48;MQ=60;FQ=172;PV4=0.58,1.8e-27,1,1 GT:PL:GQ 0/1:199,0,252:99 chr3 129290187 . T C 123 . DP=9;VDB=0.0081;AF1=0.5;AC1=1;DP4=1,2,3,3;MQ=60;FQ=53;PV4=1,0.23,1,0.16 GT:PL:GQ 0/1:153,0,80:83 chr3 129291751 . T C 214 . DP=37;VDB=0.0365;AF1=0.5;AC1=1;DP4=8,12,6,9;MQ=60;FQ=217;PV4=1,1,1,1 GT:PL:GQ 0/1:244,0,255:99 chr3 129293183 . T C 163 . DP=10;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:196,27,0:51 chr3 129293256 . T C 162 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,5,8,3;MQ=58;FQ=165;PV4=0.67,0.37,0.48,1 GT:PL:GQ 0/1:192,0,217:99 chr3 129294456 . C T 125 . DP=36;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,5,14,6;MQ=59;FQ=128;PV4=0.71,4.4e-14,0.21,1 GT:PL:GQ 0/1:155,0,236:99 chr3 129297223 . C G 44 . DP=16;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,3,3,4;MQ=60;FQ=47;PV4=0.61,6.7e-07,1,1 GT:PL:GQ 0/1:74,0,201:77 chr3 129303197 . T C 217 . DP=45;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,8,36;MQ=60;FQ=-159 GT:PL:GQ 1/1:250,132,0:99 chr3 129303436 . T G 109 . DP=55;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,16,7,28;MQ=60;FQ=112;PV4=1,1.9e-20,0.23,1 GT:PL:GQ 0/1:139,0,231:99 chr3 129324193 . A G 35.8 . DP=2;VDB=0.0108;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:67,6,0:10 chr3 129546729 . T C 222 . DP=79;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,56,17;MQ=60;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr3 129694934 . C A 75.1 . DP=7;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:108,18,0:33 chr3 129695538 . C T 123 . DP=23;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,16,4;MQ=60;FQ=-87 GT:PL:GQ 1/1:156,60,0:99 chr3 129695954 . T C 181 . DP=26;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,13,13;MQ=60;FQ=-105 GT:PL:GQ 1/1:214,78,0:99 chr3 129696041 . A G 122 . DP=13;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,3,10;MQ=60;FQ=-66 GT:PL:GQ 1/1:155,39,0:75 chr3 129811073 . T C 103 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,2,2;MQ=60;FQ=-39 GT:PL:GQ 1/1:135,12,0:21 chr3 130114408 . ACC AC 214 . INDEL;DP=36;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,6,30;MQ=60;FQ=-143 GT:PL:GQ 1/1:255,108,0:99 chr3 130116696 . A C 162 . DP=73;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,50,18;MQ=59;FQ=-232 GT:PL:GQ 1/1:195,205,0:99 chr3 130122409 . TGGGGGGGGG TGGGGGGGG 75.5 . INDEL;DP=86;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,46;MQ=59;FQ=-249 GT:PL:GQ 1/1:116,214,0:99 chr3 130124270 . A G 176 . DP=17;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,17,0;MQ=59;FQ=-78 GT:PL:GQ 1/1:209,51,0:99 chr3 130124491 . G A 222 . DP=38;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,8,29;MQ=58;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr3 130124989 . C T 222 . DP=57;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,39;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr3 130125116 . G C 222 . DP=23;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,12;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr3 130132302 . T A 23.5 . DP=47;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,2;MQ=60;FQ=-39 GT:PL:GQ 1/1:56,12,0:21 chr3 130132304 . G T 38.1 . DP=49;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-45 GT:PL:GQ 1/1:71,18,0:33 chr3 130132509 . A G 57.1 . DP=6;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:90,18,0:33 chr3 130132851 . A G 145 . DP=56;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,45,8;MQ=60;FQ=-187 GT:PL:GQ 1/1:178,160,0:99 chr3 130134492 . T C 222 . DP=46;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,27,16;MQ=59;FQ=-156 GT:PL:GQ 1/1:255,129,0:99 chr3 130134563 . G A 220 . DP=64;VDB=0.0345;AF1=1;AC1=2;DP4=0,1,13,48;MQ=59;FQ=-184;PV4=1,4.5e-07,1,0.22 GT:PL:GQ 1/1:253,157,0:99 chr3 130135456 . T C 129 . DP=19;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,15,4;MQ=60;FQ=-84 GT:PL:GQ 1/1:162,57,0:99 chr3 130135575 . A T 158 . DP=41;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,19,20;MQ=59;FQ=-144 GT:PL:GQ 1/1:191,117,0:99 chr3 130137866 . G A 17.6 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:50,12,0:20 chr3 130158343 . C T 222 . DP=71;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,56,10;MQ=59;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr3 130162395 . A G 170 . DP=61;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,18,41;MQ=60;FQ=-205 GT:PL:GQ 1/1:203,178,0:99 chr3 130174334 . G A 206 . DP=40;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,30,10;MQ=59;FQ=-147 GT:PL:GQ 1/1:239,120,0:99 chr3 130187817 . T C 222 . DP=67;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,33,33;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr3 130190630 . G A 222 . DP=79;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,50,27;MQ=60;FQ=-259 GT:PL:GQ 1/1:255,232,0:99 chr3 130190720 . ATTT ATT 214 . INDEL;DP=78;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,27,51;MQ=60;FQ=-270 GT:PL:GQ 1/1:255,235,0:99 chr3 130190777 . G A 222 . DP=61;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,28,31;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr3 130284284 . G A 225 . DP=98;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,22,25,29;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 130285880 . C T 189 . DP=101;VDB=0.0400;AF1=0.5;AC1=1;DP4=16,27,20,37;MQ=60;FQ=192;PV4=0.84,4.1e-29,1,0.19 GT:PL:GQ 0/1:219,0,255:99 chr3 130286886 . T C 36 . DP=29;VDB=0.0042;AF1=0.5;AC1=1;DP4=19,5,5,0;MQ=60;FQ=39;PV4=0.55,1,1,0.29 GT:PL:GQ 0/1:66,0,255:69 chr3 130289617 . T C 194 . DP=87;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,73,13;MQ=60;FQ=-282 GT:PL:GQ 1/1:227,255,0:99 chr3 130300650 . T C 175 . DP=96;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,43,50;MQ=60;FQ=-282 GT:PL:GQ 1/1:208,255,0:99 chr3 130308702 . A G 187 . DP=11;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:220,33,0:63 chr3 130317341 . G A 222 . DP=74;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,29,41;MQ=59;FQ=-215;PV4=0.42,1,0.43,1 GT:PL:GQ 1/1:255,188,0:99 chr3 130327973 . C T 9.31 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr3 130361856 . G A 130 . DP=42;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,17,10,7;MQ=58;FQ=133;PV4=0.053,4.4e-13,1,1 GT:PL:GQ 0/1:160,0,255:99 chr3 130368069 . A G 222 . DP=102;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,53,38;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 130368301 . G A 174 . DP=95;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,29,19,27;MQ=59;FQ=177;PV4=0.67,4.8e-19,1,0.09 GT:PL:GQ 0/1:204,0,255:99 chr3 130383973 . G A 98 . DP=177;VDB=0.0399;AF1=0.5;AC1=1;DP4=48,55,29,43;MQ=60;FQ=101;PV4=0.44,6.9e-61,1,1 GT:PL:GQ 0/1:128,0,255:99 chr3 130424390 . C A 94 . DP=129;VDB=0.0399;AF1=0.5;AC1=1;DP4=54,16,37,15;MQ=60;FQ=97;PV4=0.53,3e-47,1,1 GT:PL:GQ 0/1:124,0,255:99 chr3 130424393 . C T 146 . DP=131;VDB=0.0380;AF1=0.5;AC1=1;DP4=55,17,39,16;MQ=60;FQ=149;PV4=0.54,1.4e-42,1,0.42 GT:PL:GQ 0/1:176,0,255:99 chr3 130449222 . A G 58 . DP=26;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,10,2,7;MQ=60;FQ=61;PV4=0.66,2.5e-10,1,1 GT:PL:GQ 0/1:88,0,255:91 chr3 130569557 . T G 129 . DP=32;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,28,3;MQ=60;FQ=-120 GT:PL:GQ 1/1:162,93,0:99 chr3 130715748 . A C 14.2 . DP=25;VDB=0.0014;AF1=0.5;AC1=1;DP4=2,15,0,8;MQ=60;FQ=17.1;PV4=1,1.7e-07,1,1 GT:PL:GQ 0/1:44,0,238:47 chr3 130718472 . G A 61 . DP=88;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,34,4,39;MQ=59;FQ=64;PV4=0.23,3.9e-38,1,0.35 GT:PL:GQ 0/1:91,0,255:94 chr3 130748733 . A G 66 . DP=53;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,25,4,23;MQ=60;FQ=69;PV4=0.35,4.5e-32,1,1 GT:PL:GQ 0/1:96,0,217:99 chr3 130828790 . G A 79 . DP=8;VDB=0.0359;AF1=0.5;AC1=1;DP4=1,1,3,3;MQ=60;FQ=27;PV4=1,0.0013,1,0.46 GT:PL:GQ 0/1:109,0,54:57 chr3 130851196 . C T 139 . DP=26;VDB=0.0359;AF1=0.5;AC1=1;DP4=13,4,5,3;MQ=60;FQ=142;PV4=0.64,0.029,1,0.2 GT:PL:GQ 0/1:169,0,255:99 chr3 130851686 . G A 40 . DP=10;VDB=0.0214;AF1=0.5;AC1=1;DP4=1,6,0,3;MQ=58;FQ=43;PV4=1,0.48,1,1 GT:PL:GQ 0/1:70,0,161:73 chr3 130852185 . T C 222 . DP=28;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,8,13;MQ=59;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr3 130873723 . T G 25 . DP=15;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,2,5,0;MQ=60;FQ=28;PV4=0.51,0.039,1,1 GT:PL:GQ 0/1:55,0,172:58 chr3 130881409 . T C 179 . DP=39;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,8,7,16;MQ=59;FQ=182;PV4=0.49,3.1e-06,1,1 GT:PL:GQ 0/1:209,0,234:99 chr3 130947435 . A T 222 . DP=48;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,24,22;MQ=59;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr3 131188377 . Tacacacacacacacacacacacaca TACACacacacacacacacacacacacaca,Tacacacacacacacacacacaca 38.2 . INDEL;DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,4,0;MQ=54;FQ=-40.5 GT:PL:GQ 1/1:143,72,66,78,0,72:10 chr3 131261662 . TGGGGGGGGG TGGGGGGGG 85.5 . INDEL;DP=73;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,9,51;MQ=60;FQ=-216 GT:PL:GQ 1/1:126,181,0:99 chr3 131404572 . A C 82 . DP=15;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,15,0;MQ=60;FQ=-72 GT:PL:GQ 1/1:115,45,0:87 chr3 131404641 . C A 62 . DP=74;VDB=0.0298;AF1=0.5;AC1=1;DP4=24,10,21,4;MQ=59;FQ=65;PV4=0.35,1.7e-16,0.27,1 GT:PL:GQ 0/1:92,0,255:95 chr3 131415340 . C T 96 . DP=75;VDB=0.0164;AF1=0.5;AC1=1;DP4=37,0,32,2;MQ=60;FQ=99;PV4=0.23,2.9e-25,1,1 GT:PL:GQ 0/1:126,0,188:99 chr3 131756241 . T C 96 . DP=34;VDB=0.0164;AF1=1;AC1=2;DP4=1,0,27,3;MQ=59;FQ=-99;PV4=1,0.2,1,0.23 GT:PL:GQ 1/1:129,72,0:99 chr3 131756349 . A G 222 . DP=119;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,52,63;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 131756375 . A G 190 . DP=119;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,50,63;MQ=60;FQ=-282 GT:PL:GQ 1/1:223,255,0:99 chr3 132176310 . G C 74 . DP=17;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,12,0,5;MQ=60;FQ=77;PV4=1,1,1,1 GT:PL:GQ 0/1:104,0,171:99 chr3 132218196 . C T 133 . DP=43;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,18,0,19;MQ=60;FQ=136;PV4=0.027,0.13,1,0.45 GT:PL:GQ 0/1:163,0,255:99 chr3 132218623 . G T 153 . DP=79;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,22,15,18;MQ=60;FQ=156;PV4=0.82,4.1e-23,1,1 GT:PL:GQ 0/1:183,0,255:99 chr3 132244406 . G A 88 . DP=45;VDB=0.0271;AF1=0.5;AC1=1;DP4=19,6,15,4;MQ=60;FQ=91;PV4=1,7.5e-18,1,1 GT:PL:GQ 0/1:118,0,255:99 chr3 132347311 . A G 61 . DP=27;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,13,1,12;MQ=60;FQ=64;PV4=1,2.8e-15,1,0.21 GT:PL:GQ 0/1:91,0,203:94 chr3 132360883 . C T 222 . DP=67;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,43,23;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr3 132363786 . T A 54 . DP=34;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,15,3,11;MQ=60;FQ=57;PV4=1,4.2e-19,1,1 GT:PL:GQ 0/1:84,0,255:87 chr3 132394556 . T C 217 . DP=23;VDB=0.0298;AF1=0.5;AC1=1;DP4=2,6,4,8;MQ=60;FQ=147;PV4=1,1,1,0.38 GT:PL:GQ 0/1:247,0,174:99 chr3 132394784 . A T 28 . DP=11;VDB=0.0140;AF1=0.5;AC1=1;DP4=2,3,3,3;MQ=58;FQ=31;PV4=1,0.00026,0.19,0.29 GT:PL:GQ 0/1:58,0,123:61 chr3 132395811 . G T 54 . DP=36;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,19,2,9;MQ=60;FQ=57;PV4=1,4.2e-16,1,1 GT:PL:GQ 0/1:84,0,255:87 chr3 132401421 . G A 11.1 . DP=2;VDB=0.0135;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr3 132401600 . C T 94 . DP=38;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,17,9,6;MQ=60;FQ=97;PV4=0.049,2e-18,1,0.33 GT:PL:GQ 0/1:124,0,255:99 chr3 132407481 . TAAAAAA TAAAAAAA 30.5 . INDEL;DP=29;VDB=0.0099;AF1=0.5;AC1=1;DP4=15,0,11,3;MQ=60;FQ=10.8;PV4=0.1,1,1,0.46 GT:PL:GQ 0/1:68,0,45:48 chr3 132413875 . G A 91 . DP=39;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,16,1,20;MQ=59;FQ=94;PV4=1,7.7e-13,0.2,0.27 GT:PL:GQ 0/1:121,0,165:99 chr3 132435823 . C T 55 . DP=21;VDB=0.0118;AF1=0.5;AC1=1;DP4=4,9,2,6;MQ=60;FQ=58;PV4=1,8.8e-11,1,0.25 GT:PL:GQ 0/1:85,0,255:88 chr3 132436967 . A G 31 . DP=15;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,4,1,4;MQ=60;FQ=34;PV4=0.56,5.3e-10,1,0.043 GT:PL:GQ 0/1:61,0,214:64 chr3 132438719 . T C 16.1 . DP=10;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,4,0,6;MQ=60;FQ=19.1;PV4=1,0.0031,1,1 GT:PL:GQ 0/1:46,0,79:49 chr3 133114893 . C T 61.5 . DP=6;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:94,12,0:21 chr3 133166403 . A G 4.61 . DP=3;VDB=0.0211;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:34,6,0:5 chr3 133167363 . G A 68 . DP=21;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,2,8,2;MQ=60;FQ=71;PV4=1,7.5e-10,1,1 GT:PL:GQ 0/1:98,0,204:99 chr3 133191093 . A G 75 . DP=9;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:108,24,0:45 chr3 133191385 . C A 25 . DP=5;VDB=0.0177;AF1=0.5;AC1=1;DP4=0,2,1,2;MQ=60;FQ=23.9;PV4=1,0.012,1,0.13 GT:PL:GQ 0/1:55,0,53:54 chr3 133342218 . C T 225 . DP=91;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,31,19,25;MQ=60;FQ=225;PV4=0.39,0.041,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr3 133368362 . T G 160 . DP=93;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,22,21,28;MQ=60;FQ=163;PV4=0.68,1.3e-45,1,1 GT:PL:GQ 0/1:190,0,255:99 chr3 133375785 . G A 178 . DP=29;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,0,29;MQ=60;FQ=-114 GT:PL:GQ 1/1:211,87,0:99 chr3 133380130 . T C 53 . DP=12;VDB=0.0081;AF1=0.5003;AC1=1;DP4=0,2,1,7;MQ=58;FQ=4.13;PV4=1,0.00037,1,1 GT:PL:GQ 0/1:83,0,29:32 chr3 133465201 . G T 160 . DP=34;VDB=0.0384;AF1=0.5;AC1=1;DP4=5,7,10,10;MQ=60;FQ=163;PV4=0.73,4.6e-10,1,0.13 GT:PL:GQ 0/1:190,0,210:99 chr3 133465283 . A G 161 . DP=29;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,9,17;MQ=60;FQ=-105 GT:PL:GQ 1/1:194,78,0:99 chr3 133474328 . G A 99 . DP=54;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,20,5,17;MQ=60;FQ=102;PV4=0.55,5.4e-12,1,1 GT:PL:GQ 0/1:129,0,255:99 chr3 133483696 . T C 143 . DP=29;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,19,9;MQ=59;FQ=-111 GT:PL:GQ 1/1:176,84,0:99 chr3 133485133 . A G 222 . DP=67;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,43,21;MQ=59;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr3 133485371 . G C 4.77 . DP=8;VDB=0.0007;AF1=0.4999;AC1=1;DP4=0,4,0,4;MQ=60;FQ=6.99;PV4=1,4.5e-06,1,1 GT:PL:GQ 0/1:33,0,90:33 chr3 133486958 . G C 217 . DP=32;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,11,4,14;MQ=60;FQ=187;PV4=1,0.42,1,1 GT:PL:GQ 0/1:247,0,214:99 chr3 133493827 . T C 105 . DP=52;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,15,4,24;MQ=58;FQ=108;PV4=0.11,6.4e-21,0.21,1 GT:PL:GQ 0/1:135,0,255:99 chr3 133553527 . C T 71 . DP=17;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,0,16;MQ=60;FQ=-75 GT:PL:GQ 1/1:104,48,0:93 chr3 133556964 . Accgtgccgggccccgtgccgggccccgtgcc Accgtgccgggccccgtgcc 129 . INDEL;DP=18;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,17,1;MQ=29;FQ=-88.5 GT:PL:GQ 1/1:170,54,0:99 chr3 133560580 . G A 101 . DP=64;VDB=0.0345;AF1=0.5;AC1=1;DP4=9,26,9,20;MQ=59;FQ=104;PV4=0.78,1.2e-31,0.059,0.29 GT:PL:GQ 0/1:131,0,255:99 chr3 133583577 . C T 103 . DP=40;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,20,2,16;MQ=60;FQ=106;PV4=1,5.9e-10,1,0.18 GT:PL:GQ 0/1:133,0,239:99 chr3 133692497 . A G 59 . DP=8;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:92,24,0:45 chr3 133692743 . C T 222 . DP=27;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,20;MQ=59;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr3 133698280 . C G 205 . DP=45;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,28,11;MQ=60;FQ=-144 GT:PL:GQ 1/1:238,117,0:99 chr3 134077470 . C G 202 . DP=35;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,16,13;MQ=60;FQ=-114 GT:PL:GQ 1/1:235,87,0:99 chr3 134080661 . A G 195 . DP=30;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,20;MQ=59;FQ=-114 GT:PL:GQ 1/1:228,87,0:99 chr3 134214042 . T C 25 . DP=12;VDB=0.0053;AF1=0.5;AC1=1;DP4=7,0,5,0;MQ=60;FQ=28;PV4=1,1.9e-05,1,1 GT:PL:GQ 0/1:55,0,140:58 chr3 134226159 . C T 177 . DP=34;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,16,1,16;MQ=60;FQ=147;PV4=1,0.5,1,0.034 GT:PL:GQ 0/1:207,0,174:99 chr3 134256159 . A G 49 . DP=17;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,7,0,8;MQ=59;FQ=52;PV4=0.47,2.4e-06,1,0.43 GT:PL:GQ 0/1:79,0,194:82 chr3 134266124 . A G 225 . DP=63;VDB=0.0380;AF1=0.5;AC1=1;DP4=22,4,30,4;MQ=59;FQ=225;PV4=0.72,1,0.11,0.19 GT:PL:GQ 0/1:255,0,255:99 chr3 134266148 . G C 222 . DP=84;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,67,14;MQ=59;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr3 134266321 . A G 37 . DP=55;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,26,0,20;MQ=60;FQ=40;PV4=0.037,4.6e-25,0.1,1 GT:PL:GQ 0/1:67,0,255:70 chr3 134280395 . T A 181 . DP=35;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,6,29;MQ=59;FQ=-132 GT:PL:GQ 1/1:214,105,0:99 chr3 134322742 . A G 132 . DP=69;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,21,8,26;MQ=59;FQ=135;PV4=0.2,1.9e-28,0.15,1 GT:PL:GQ 0/1:162,0,255:99 chr3 134322814 . G C 126 . DP=54;VDB=0.0392;AF1=0.5;AC1=1;DP4=14,10,12,16;MQ=60;FQ=129;PV4=0.4,3.7e-21,1,0.46 GT:PL:GQ 0/1:156,0,255:99 chr3 134323156 . A G 189 . DP=32;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,13,17;MQ=58;FQ=-117 GT:PL:GQ 1/1:222,90,0:99 chr3 134331874 . T C 222 . DP=26;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,23,2;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr3 134331980 . C T 225 . DP=41;VDB=0.0393;AF1=0.5;AC1=1;DP4=7,7,11,15;MQ=60;FQ=192;PV4=0.74,0.2,1,1 GT:PL:GQ 0/1:255,0,219:99 chr3 134339626 . A G 144 . DP=60;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,12,13,19;MQ=60;FQ=147;PV4=0.43,3.3e-13,0.19,1 GT:PL:GQ 0/1:174,0,255:99 chr3 134514579 . T C 222 . DP=34;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,6,27;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr3 134644636 . G T 67 . DP=14;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,12,2;MQ=60;FQ=-69 GT:PL:GQ 1/1:100,42,0:81 chr3 134670524 . C T 215 . DP=76;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,41,29;MQ=60;FQ=-238 GT:PL:GQ 1/1:248,211,0:99 chr3 134697009 . AC ACC 60.4 . INDEL;DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:100,9,0:16 chr3 134898742 . C T 225 . DP=33;VDB=0.0118;AF1=0.5;AC1=1;DP4=12,6,11,4;MQ=59;FQ=225;PV4=0.72,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 134968465 . T C 134 . DP=7;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:167,21,0:39 chr3 135720540 . A G 212 . DP=67;VDB=0.0380;AF1=1;AC1=2;DP4=0,1,28,37;MQ=60;FQ=-185;PV4=1,1.2e-06,1,0.21 GT:PL:GQ 1/1:245,158,0:99 chr3 135720673 . T C 222 . DP=71;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,39,28;MQ=59;FQ=-229 GT:PL:GQ 1/1:255,202,0:99 chr3 135722264 . A G 176 . DP=125;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,44,72;MQ=60;FQ=-282;PV4=0.38,0.00029,1,0.25 GT:PL:GQ 1/1:209,255,0:99 chr3 135768232 . T A 222 . DP=73;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,55;MQ=59;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr3 136035737 . A G 222 . DP=48;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,41,5;MQ=60;FQ=-165 GT:PL:GQ 1/1:255,138,0:99 chr3 136059537 . G C 222 . DP=60;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,12,47;MQ=59;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr3 136082119 . A G 39 . DP=21;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,0,14,0;MQ=60;FQ=42;PV4=1,2.8e-15,1,1 GT:PL:GQ 0/1:69,0,111:72 chr3 136088038 . G A 187 . DP=34;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,19,15;MQ=59;FQ=-129 GT:PL:GQ 1/1:220,102,0:99 chr3 136139878 . G A 222 . DP=14;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,3;MQ=60;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr3 136196028 . T C 222 . DP=16;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,11,4;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr3 136196071 . C T 167 . DP=33;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,22,9;MQ=59;FQ=-120 GT:PL:GQ 1/1:200,93,0:99 chr3 136573289 . G A 116 . DP=22;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,19,1;MQ=60;FQ=-87 GT:PL:GQ 1/1:149,60,0:99 chr3 136573440 . A G 135 . DP=118;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,34,38;MQ=59;FQ=-244 GT:PL:GQ 1/1:168,217,0:99 chr3 136574501 . A G 110 . DP=49;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,3,45;MQ=59;FQ=-171 GT:PL:GQ 1/1:143,144,0:99 chr3 136574521 . C T 128 . DP=33;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,30;MQ=59;FQ=-123 GT:PL:GQ 1/1:161,96,0:99 chr3 136649463 . C T 148 . DP=16;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,3,13;MQ=60;FQ=-75 GT:PL:GQ 1/1:181,48,0:93 chr3 137717991 . G C 11.3 . DP=8;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,4,0,4;MQ=60;FQ=14.2;PV4=1,2.1e-07,1,0.021 GT:PL:GQ 0/1:41,0,101:43 chr3 137781923 . A C 19.6 . DP=6;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:52,12,0:21 chr3 137786442 . T C 191 . DP=23;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,14,6;MQ=60;FQ=-87 GT:PL:GQ 1/1:224,60,0:99 chr3 137787047 . C T 147 . DP=11;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,8,2;MQ=60;FQ=-57 GT:PL:GQ 1/1:180,30,0:57 chr3 137787192 . T C 222 . DP=38;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,18,19;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr3 137787282 . T C 222 . DP=25;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,19;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr3 137787935 . G A 222 . DP=16;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,12,4;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr3 137787963 . T G 149 . DP=15;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,8,7;MQ=60;FQ=-72 GT:PL:GQ 1/1:182,45,0:87 chr3 137799291 . A T 131 . DP=15;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,13,2;MQ=60;FQ=-72 GT:PL:GQ 1/1:164,45,0:87 chr3 137799498 . T C 48.3 . DP=6;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:81,15,0:27 chr3 137800656 . A G 120 . DP=24;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,3,19;MQ=60;FQ=-93 GT:PL:GQ 1/1:153,66,0:99 chr3 137807259 . G A 222 . DP=17;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,9,7;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr3 137816817 . A C 84 . DP=11;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:117,30,0:57 chr3 137843106 . T C 85 . DP=41;VDB=0.0271;AF1=0.5;AC1=1;DP4=17,8,11,5;MQ=59;FQ=88;PV4=1,3e-16,0.11,1 GT:PL:GQ 0/1:115,0,255:99 chr3 137843476 . G T 189 . DP=87;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,26,24,19;MQ=60;FQ=192;PV4=0.2,4.1e-23,1,1 GT:PL:GQ 0/1:219,0,255:99 chr3 137850003 . A G 89 . DP=65;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,25,11,13;MQ=60;FQ=92;PV4=0.61,7.1e-14,0.097,1 GT:PL:GQ 0/1:119,0,255:99 chr3 137880695 . A G 20 . DP=50;VDB=0.0019;AF1=0.5;AC1=1;DP4=25,2,18,1;MQ=59;FQ=23;PV4=1,3.7e-19,1,1 GT:PL:GQ 0/1:50,0,236:53 chr3 137880743 . G A 225 . DP=154;VDB=0.0244;AF1=0.5;AC1=1;DP4=61,14,61,16;MQ=59;FQ=225;PV4=0.84,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 137881265 . T A 143 . DP=114;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,47,13,33;MQ=59;FQ=146;PV4=1,2.3e-36,1,1 GT:PL:GQ 0/1:173,0,255:99 chr3 137882377 . G T 3.54 . DP=7;VDB=0.0156;AF1=0.4998;AC1=1;DP4=0,4,0,3;MQ=60;FQ=5.47;PV4=1,2.5e-06,1,0.34 GT:PL:GQ 0/1:31,0,102:30 chr3 137882752 . A G 63 . DP=48;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,27,1,18;MQ=59;FQ=66;PV4=1,1.3e-16,0.38,1 GT:PL:GQ 0/1:93,0,248:96 chr3 137906538 . C T 47 . DP=20;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,10,1,8;MQ=60;FQ=50;PV4=1,5.1e-07,1,1 GT:PL:GQ 0/1:77,0,179:80 chr3 137981548 . A G 83.1 . DP=6;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,4;MQ=56;FQ=-45 GT:PL:GQ 1/1:116,18,0:33 chr3 137982718 . T G 129 . DP=61;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,19,13,25;MQ=60;FQ=132;PV4=0.24,2.3e-25,1,1 GT:PL:GQ 0/1:159,0,252:99 chr3 137992120 . G A 7.8 . DP=6;VDB=0.0040;AF1=0.5;AC1=1;DP4=0,3,0,2;MQ=60;FQ=10.4;PV4=1,0.22,1,0.26 GT:PL:GQ 0/1:37,0,75:39 chr3 138025136 . T G 92 . DP=23;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,23,0;MQ=60;FQ=-96 GT:PL:GQ 1/1:125,69,0:99 chr3 138025396 . A G 115 . DP=16;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,2,14;MQ=60;FQ=-75 GT:PL:GQ 1/1:148,48,0:93 chr3 138033181 . C T 177 . DP=76;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,37,38;MQ=59;FQ=-253 GT:PL:GQ 1/1:210,226,0:99 chr3 138170788 . T G 68 . DP=35;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,7,13,1;MQ=60;FQ=71;PV4=0.053,4.5e-05,1,1 GT:PL:GQ 0/1:98,0,248:99 chr3 138173905 . G A 16.9 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:48,6,0:10 chr3 138176533 . A T 215 . DP=12;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,2,9;MQ=60;FQ=-60 GT:PL:GQ 1/1:248,33,0:63 chr3 138177895 . C T 30 . DP=13;VDB=0.0003;AF1=0.5;AC1=1;DP4=6,0,7,0;MQ=60;FQ=33;PV4=1,1.7e-08,1,0.02 GT:PL:GQ 0/1:60,0,128:63 chr3 138179308 . G A 5.29 . DP=2;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:35,6,0:6 chr3 138179328 . C T 23.1 . DP=7;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:56,21,0:37 chr3 138187568 . C T 222 . DP=81;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,58,18;MQ=59;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr3 138189031 . T C 155 . DP=31;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,9,20;MQ=60;FQ=-114 GT:PL:GQ 1/1:188,87,0:99 chr3 138189658 . A G 222 . DP=25;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,21,4;MQ=58;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr3 138191232 . G A 82 . DP=74;VDB=0.0271;AF1=0.5;AC1=1;DP4=35,3,29,4;MQ=59;FQ=85;PV4=0.7,2.8e-25,0.46,0.45 GT:PL:GQ 0/1:112,0,255:99 chr3 138195529 . C T 92 . DP=13;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,0;MQ=56;FQ=-63 GT:PL:GQ 1/1:125,36,0:69 chr3 138289163 . T C 222 . DP=32;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,30,2;MQ=59;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr3 138289221 . C T 198 . DP=79;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,59,19;MQ=60;FQ=-262 GT:PL:GQ 1/1:231,235,0:99 chr3 138329862 . G A 222 . DP=70;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,42;MQ=60;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr3 138417989 . G A 69 . DP=12;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:102,36,0:69 chr3 138433568 . C T 222 . DP=63;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,17,45;MQ=60;FQ=-214 GT:PL:GQ 1/1:255,187,0:99 chr3 138664847 . C T 5.46 . DP=5;VDB=0.0151;AF1=0.4999;AC1=1;DP4=2,1,1,1;MQ=60;FQ=7.8;PV4=1,0.3,1,0.41 GT:PL:GQ 0/1:34,0,74:34 chr3 138724757 . C G 138 . DP=79;VDB=0.0398;AF1=0.5;AC1=1;DP4=22,27,8,19;MQ=59;FQ=141;PV4=0.23,4.9e-11,0.029,0.062 GT:PL:GQ 0/1:168,0,255:99 chr3 138882086 . G A 86 . DP=16;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,0,14;MQ=60;FQ=-69 GT:PL:GQ 1/1:119,42,0:81 chr3 139098195 . G A 73 . DP=26;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,5,7,4;MQ=60;FQ=76;PV4=0.67,1.5e-08,1,0.14 GT:PL:GQ 0/1:103,0,222:99 chr3 139173565 . A G 222 . DP=82;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,46,32;MQ=60;FQ=-262 GT:PL:GQ 1/1:255,235,0:99 chr3 139180919 . ATGTGTG ATGTG 214 . INDEL;DP=42;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,41,1;MQ=59;FQ=-161 GT:PL:GQ 1/1:255,126,0:99 chr3 139244762 . C T 9.52 . DP=22;VDB=0.0244;AF1=0.5;AC1=1;DP4=7,10,2,3;MQ=60;FQ=12.3;PV4=1,7.6e-08,1,1 GT:PL:GQ 0/1:39,0,255:41 chr3 139257603 . A G 178 . DP=59;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,49,9;MQ=60;FQ=-202 GT:PL:GQ 1/1:211,175,0:99 chr3 139258508 . G A 128 . DP=15;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,5,8;MQ=60;FQ=-66 GT:PL:GQ 1/1:161,39,0:75 chr3 139280328 . GA GAA 99.7 . INDEL;DP=5;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-49.5 GT:PL:GQ 1/1:140,15,0:27 chr3 139297655 . A G 44.1 . DP=8;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:77,18,0:33 chr3 139894697 . T C 21 . DP=5;VDB=0.0156;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=55;FQ=12.9;PV4=1,0.14,0.25,0.21 GT:PL:GQ 0/1:51,0,40:43 chr3 140122341 . G A 57 . DP=3;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:89,9,0:16 chr3 140167322 . G A 49 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:81,9,0:16 chr3 140167536 . A G 164 . DP=33;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,21;MQ=60;FQ=-120 GT:PL:GQ 1/1:197,93,0:99 chr3 140178279 . G A 89 . DP=43;VDB=0.0244;AF1=0.5;AC1=1;DP4=17,1,23,2;MQ=59;FQ=92;PV4=1,9.1e-17,1,0.28 GT:PL:GQ 0/1:119,0,198:99 chr3 140178485 . G A 96 . DP=101;VDB=0.0400;AF1=0.5;AC1=1;DP4=34,21,26,15;MQ=60;FQ=99;PV4=1,1.9e-37,0.05,0.33 GT:PL:GQ 0/1:126,0,255:99 chr3 140178638 . CCCTCCT CCCT 217 . INDEL;DP=48;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,17,4,18;MQ=57;FQ=217;PV4=1,0.0036,0.0099,1 GT:PL:GQ 0/1:255,0,255:99 chr3 140281723 . C T 185 . DP=38;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,28,10;MQ=60;FQ=-141 GT:PL:GQ 1/1:218,114,0:99 chr3 140282084 . C G 70 . DP=10;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:103,30,0:57 chr3 140282861 . C T 222 . DP=100;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,47,51;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 140285115 . T C 9.31 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr3 140401693 . A G 210 . DP=96;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,59,32;MQ=60;FQ=-282 GT:PL:GQ 1/1:243,255,0:99 chr3 140406947 . G A 225 . DP=153;VDB=0.0380;AF1=0.5;AC1=1;DP4=39,42,33,38;MQ=60;FQ=225;PV4=0.87,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 140407260 . C A 178 . DP=73;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,15,20,21;MQ=59;FQ=181;PV4=1,6.8e-19,0.11,1 GT:PL:GQ 0/1:208,0,255:99 chr3 140419715 . C T 102 . DP=50;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,5,20,6;MQ=60;FQ=105;PV4=1,2.2e-13,1,0.035 GT:PL:GQ 0/1:132,0,255:99 chr3 140695202 . T C 155 . DP=70;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,15,27,9;MQ=60;FQ=158;PV4=0.13,6.3e-24,1,1 GT:PL:GQ 0/1:185,0,255:99 chr3 140695307 . C A 127 . DP=53;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,23,7,15;MQ=60;FQ=130;PV4=0.54,2.2e-17,1,1 GT:PL:GQ 0/1:157,0,255:99 chr3 140998214 . G A 219 . DP=41;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,6,11,6;MQ=60;FQ=221;PV4=0.73,0.44,1,1 GT:PL:GQ 0/1:249,0,255:99 chr3 141162128 . C G 163 . DP=101;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,32,17,31;MQ=60;FQ=166;PV4=0.84,2.9e-32,1,0.39 GT:PL:GQ 0/1:193,0,255:99 chr3 141162185 . T G 80 . DP=63;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,23,9,18;MQ=60;FQ=83;PV4=1,3.8e-21,1,1 GT:PL:GQ 0/1:110,0,255:99 chr3 141295778 . T A 32 . DP=26;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,1,5,2;MQ=60;FQ=35;PV4=1,4.1e-06,1,1 GT:PL:GQ 0/1:62,0,149:65 chr3 141326602 . T C 84 . DP=13;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,5,1,4;MQ=60;FQ=87;PV4=1,0.12,1,1 GT:PL:GQ 0/1:114,0,146:99 chr3 141327474 . G A 131 . DP=88;VDB=0.0393;AF1=0.5;AC1=1;DP4=27,26,16,18;MQ=60;FQ=134;PV4=0.83,3.8e-29,0.11,0.26 GT:PL:GQ 0/1:161,0,255:99 chr3 141328918 . T G 4.13 . DP=11;VDB=0.0365;AF1=0.4998;AC1=1;DP4=0,6,0,3;MQ=60;FQ=6.2;PV4=1,0.0048,1,1 GT:PL:GQ 0/1:32,0,124:31 chr3 141331222 . G A 112 . DP=11;VDB=0.0359;AF1=0.5;AC1=1;DP4=1,4,1,5;MQ=60;FQ=103;PV4=1,0.14,1,0.42 GT:PL:GQ 0/1:142,0,130:99 chr3 141535558 . A G 116 . DP=39;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,30,8;MQ=60;FQ=-141 GT:PL:GQ 1/1:149,114,0:99 chr3 141535608 . C A 222 . DP=69;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,45,21;MQ=60;FQ=-226 GT:PL:GQ 1/1:255,199,0:99 chr3 141625999 . G C 222 . DP=11;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,6,5;MQ=60;FQ=-60 GT:PL:GQ 1/1:255,33,0:63 chr3 141626189 . cggtag cGGTAggtag 101 . INDEL;DP=3;VDB=0.0199;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:141,9,0:16 chr3 141812759 . G A 121 . DP=26;VDB=0.0398;AF1=1;AC1=2;DP4=0,1,8,16;MQ=60;FQ=-62;PV4=1,3.4e-07,1,0.2 GT:PL:GQ 1/1:154,35,0:67 chr3 141889009 . T G 87 . DP=57;VDB=0.0392;AF1=0.5;AC1=1;DP4=18,17,13,6;MQ=60;FQ=90;PV4=0.26,2.1e-13,1,0.19 GT:PL:GQ 0/1:117,0,255:99 chr3 141905001 . T C 127 . DP=48;VDB=0.0271;AF1=0.5;AC1=1;DP4=17,4,21,6;MQ=59;FQ=130;PV4=1,6.4e-22,1,0.5 GT:PL:GQ 0/1:157,0,255:99 chr3 141923506 . C T 135 . DP=15;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,0,4,3;MQ=60;FQ=102;PV4=0.19,0.43,1,1 GT:PL:GQ 0/1:165,0,129:99 chr3 141932356 . G A 105 . DP=121;VDB=0.0380;AF1=0.5;AC1=1;DP4=32,28,33,26;MQ=60;FQ=108;PV4=0.85,6.6e-57,1,1 GT:PL:GQ 0/1:135,0,255:99 chr3 142076059 . A G 52.5 . DP=4;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:85,12,0:21 chr3 142083776 . T TTA 89.4 . INDEL;DP=3;VDB=0.0020;AF1=1;AC1=2;DP4=0,0,3,0;MQ=52;FQ=-43.5 GT:PL:GQ 1/1:129,9,0:16 chr3 142094816 . gcacacacacacacacacacacacacac gCACAcacacacacacacacacacacacacac,gCAcacacacacacacacacacacacacac 81.5 . INDEL;DP=21;VDB=0.0164;AF1=0.5064;AC1=1;DP4=0,1,1,10;MQ=60;FQ=-18.6;PV4=1,1,1,1 GT:PL:GQ 0/1:255,136,152,207,0,230:19 chr3 142122451 . T A 93 . DP=8;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,7,1;MQ=60;FQ=-51 GT:PL:GQ 1/1:126,24,0:45 chr3 142168331 . C T 156 . DP=95;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,62,29;MQ=59;FQ=-282 GT:PL:GQ 1/1:189,255,0:99 chr3 142178144 . C T 141 . DP=83;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,29,20,13;MQ=60;FQ=144;PV4=0.074,1.5e-30,1,0.2 GT:PL:GQ 0/1:171,0,255:99 chr3 142222284 . A G 62 . DP=12;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,4,2,5;MQ=60;FQ=65;PV4=1,2.8e-09,1,1 GT:PL:GQ 0/1:92,0,129:95 chr3 142255090 . T C 25 . DP=9;VDB=0.0215;AF1=0.5;AC1=1;DP4=0,6,0,3;MQ=60;FQ=28;PV4=1,0.032,1,0.14 GT:PL:GQ 0/1:55,0,126:58 chr3 142272275 . aacacacacacacacacacacacaca aACacacacacacacacacacacacaca 203 . INDEL;DP=25;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,5,1,6;MQ=60;FQ=84.5;PV4=1,1,1,1 GT:PL:GQ 0/1:241,0,119:99 chr3 142272314 . G A 116 . DP=8;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:149,21,0:39 chr3 142277427 . A G 27 . DP=67;VDB=0.0011;AF1=0.5;AC1=1;DP4=36,1,21,0;MQ=60;FQ=30;PV4=1,5.6e-28,1,0.31 GT:PL:GQ 0/1:57,0,224:60 chr3 142277536 . A G 225 . DP=205;VDB=0.0380;AF1=0.5;AC1=1;DP4=56,53,51,41;MQ=60;FQ=225;PV4=0.57,0.0061,1,0.19 GT:PL:GQ 0/1:255,0,255:99 chr3 142277575 . A T 222 . DP=211;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,58,143;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 142281353 . C G 101 . DP=37;VDB=0.0216;AF1=0.5;AC1=1;DP4=8,11,7,9;MQ=60;FQ=104;PV4=1,3.5e-23,1,0.25 GT:PL:GQ 0/1:131,0,255:99 chr3 142281612 . A G 222 . DP=66;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,41,22;MQ=60;FQ=-217 GT:PL:GQ 1/1:255,190,0:99 chr3 142408606 . G A 222 . DP=29;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,13,15;MQ=60;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr3 142413407 . C T 101 . DP=59;VDB=0.0345;AF1=0.5;AC1=1;DP4=11,19,7,22;MQ=60;FQ=104;PV4=0.4,2.3e-27,1,1 GT:PL:GQ 0/1:131,0,255:99 chr3 142548640 . G A 59 . DP=34;VDB=0.0359;AF1=0.5;AC1=1;DP4=4,18,3,9;MQ=60;FQ=62;PV4=0.68,1.8e-09,1,0.13 GT:PL:GQ 0/1:89,0,255:92 chr3 142567327 . G A 82 . DP=63;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,25,5,25;MQ=60;FQ=85;PV4=1,1.3e-27,1,0.22 GT:PL:GQ 0/1:112,0,255:99 chr3 142607767 . C T 7.8 . DP=13;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,7,0,4;MQ=58;FQ=10.4;PV4=1,0.00019,0.083,1 GT:PL:GQ 0/1:37,0,155:39 chr3 142669479 . A G 222 . DP=51;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,29,21;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr3 142670616 . A G 169 . DP=69;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,42,21;MQ=60;FQ=-217 GT:PL:GQ 1/1:202,190,0:99 chr3 142729433 . T C 4.61 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:34,6,0:5 chr3 142730774 . T G 222 . DP=108;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,48,54;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 142756907 . A G 104 . DP=4;VDB=0.0059;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:136,12,0:21 chr3 142773738 . C T 109 . DP=17;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,13,2;MQ=60;FQ=-72 GT:PL:GQ 1/1:142,45,0:87 chr3 142895298 . T G 21 . DP=14;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,1,7,0;MQ=42;FQ=24;PV4=1,0.0049,0.0038,1 GT:PL:GQ 0/1:51,0,101:54 chr3 143214114 . T C 48 . DP=26;VDB=0.0019;AF1=0.5;AC1=1;DP4=13,0,11,2;MQ=60;FQ=51;PV4=0.48,7.5e-20,1,0.22 GT:PL:GQ 0/1:78,0,174:81 chr3 143412205 . A G 225 . DP=40;VDB=0.0244;AF1=0.5;AC1=1;DP4=6,14,5,15;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 143412268 . T C 32 . DP=11;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,5,1,5;MQ=60;FQ=35;PV4=1,0.00057,1,0.36 GT:PL:GQ 0/1:62,0,101:65 chr3 143567207 . A G 48 . DP=56;VDB=0.0164;AF1=0.5;AC1=1;DP4=4,22,5,13;MQ=59;FQ=51;PV4=0.45,6.5e-30,0.12,0.29 GT:PL:GQ 0/1:78,0,255:81 chr3 145788467 . T C 46 . DP=38;VDB=0.0164;AF1=0.5;AC1=1;DP4=19,3,13,1;MQ=60;FQ=49;PV4=1,1.6e-16,1,1 GT:PL:GQ 0/1:76,0,255:79 chr3 145788803 . T C 12.3 . DP=6;VDB=0.0020;AF1=0.5;AC1=1;DP4=2,1,3,0;MQ=60;FQ=15.1;PV4=1,0.09,1,1 GT:PL:GQ 0/1:42,0,74:44 chr3 145790519 . T A 17.1 . DP=15;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,5,0,10;MQ=60;FQ=20.1;PV4=1,2.9e-05,1,1 GT:PL:GQ 0/1:47,0,80:50 chr3 145790948 . A G 7.8 . DP=4;VDB=0.0116;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=10.4;PV4=1,0.033,1,1 GT:PL:GQ 0/1:37,0,61:39 chr3 145809750 . T C 41 . DP=18;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,8,0,8;MQ=60;FQ=44;PV4=0.48,3.5e-11,1,1 GT:PL:GQ 0/1:71,0,208:74 chr3 145820684 . G A 140 . DP=21;VDB=0.0393;AF1=0.5;AC1=1;DP4=4,5,1,10;MQ=60;FQ=143;PV4=0.13,0.0084,1,1 GT:PL:GQ 0/1:170,0,207:99 chr3 145824478 . A G 74 . DP=40;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,14,4,18;MQ=60;FQ=77;PV4=1,2.5e-21,1,1 GT:PL:GQ 0/1:104,0,216:99 chr3 145824504 . G A 79 . DP=31;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,13,1,17;MQ=60;FQ=82;PV4=1,1.7e-17,1,0.33 GT:PL:GQ 0/1:109,0,162:99 chr3 145828256 . GT GTT 134 . INDEL;DP=30;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,14,0,14;MQ=60;FQ=110;PV4=1,1,1,1 GT:PL:GQ 0/1:172,0,145:99 chr3 145838895 . C T 86 . DP=152;VDB=0.0380;AF1=0.5;AC1=1;DP4=62,15,52,17;MQ=60;FQ=89;PV4=0.55,6e-81,0.47,0.48 GT:PL:GQ 0/1:116,0,255:99 chr3 145841854 . T C 83 . DP=18;VDB=0.0164;AF1=0.5;AC1=1;DP4=11,1,6,0;MQ=59;FQ=86;PV4=1,1,1,1 GT:PL:GQ 0/1:113,0,197:99 chr3 145917761 . T C 225 . DP=28;VDB=0.0392;AF1=0.5;AC1=1;DP4=2,10,5,10;MQ=60;FQ=187;PV4=0.41,0.069,1,0.27 GT:PL:GQ 0/1:255,0,214:99 chr3 145924632 . C T 48 . DP=5;VDB=0.0040;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=20.1;PV4=1,1,1,0.32 GT:PL:GQ 0/1:78,0,47:50 chr3 145938528 . C A 41 . DP=8;VDB=0.0070;AF1=0.5;AC1=1;DP4=5,0,3,0;MQ=60;FQ=44;PV4=1,0.27,1,1 GT:PL:GQ 0/1:71,0,116:74 chr3 145938619 . T C 147 . DP=42;VDB=0.0118;AF1=0.5;AC1=1;DP4=13,3,18,8;MQ=59;FQ=150;PV4=0.49,6.7e-14,0.13,1 GT:PL:GQ 0/1:177,0,225:99 chr3 145938782 . C T 10.4 . DP=19;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,6,1,6;MQ=60;FQ=13.2;PV4=1,3.7e-08,1,1 GT:PL:GQ 0/1:40,0,170:42 chr3 145939776 . T G 20 . DP=6;VDB=0.0223;AF1=0.5;AC1=1;DP4=2,1,3,0;MQ=60;FQ=23;PV4=1,0.18,1,1 GT:PL:GQ 0/1:50,0,69:53 chr3 146113576 . CTTT CTT 214 . INDEL;DP=25;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,18,7;MQ=59;FQ=-110 GT:PL:GQ 1/1:255,75,0:99 chr3 146176075 . C T 100 . DP=9;VDB=0.0325;AF1=1;AC1=2;DP4=0,0,7,2;MQ=60;FQ=-54 GT:PL:GQ 1/1:133,27,0:51 chr3 146177815 . C T 176 . DP=44;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,14,29;MQ=60;FQ=-156 GT:PL:GQ 1/1:209,129,0:99 chr3 146243369 . G T 23 . DP=10;VDB=0.0204;AF1=0.5;AC1=1;DP4=4,2,2,2;MQ=60;FQ=26;PV4=1,8.4e-05,1,0.22 GT:PL:GQ 0/1:53,0,158:56 chr3 146246288 . A G 3.54 . DP=8;VDB=0.0081;AF1=0.4998;AC1=1;DP4=3,0,4,0;MQ=60;FQ=5.47;PV4=1,0.00017,1,1 GT:PL:GQ 0/1:31,0,77:30 chr3 146307371 . G A 37 . DP=59;VDB=0.0244;AF1=0.5;AC1=1;DP4=29,3,25,1;MQ=60;FQ=40;PV4=0.62,4.3e-27,1,1 GT:PL:GQ 0/1:67,0,255:70 chr3 146307635 . C A 16.1 . DP=13;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,8,0,5;MQ=60;FQ=19.1;PV4=1,4.2e-09,1,0.41 GT:PL:GQ 0/1:46,0,150:49 chr3 147111694 . C T 225 . DP=41;VDB=0.0298;AF1=0.5;AC1=1;DP4=9,6,13,11;MQ=60;FQ=204;PV4=0.75,1,1,1 GT:PL:GQ 0/1:255,0,231:99 chr3 147111779 . T C 222 . DP=33;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,14,19;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr3 148459884 . A G 225 . DP=92;VDB=0.0399;AF1=0.5;AC1=1;DP4=26,23,25,17;MQ=60;FQ=225;PV4=0.67,1,0.14,1 GT:PL:GQ 0/1:255,0,255:99 chr3 148459988 . A C 122 . DP=61;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,22,6,18;MQ=60;FQ=125;PV4=0.57,1e-24,1,0.5 GT:PL:GQ 0/1:152,0,255:99 chr3 148558447 . G A 28 . DP=29;VDB=0.0025;AF1=0.5;AC1=1;DP4=12,0,16,0;MQ=60;FQ=31;PV4=1,3.9e-18,1,0.12 GT:PL:GQ 0/1:58,0,160:61 chr3 148562310 . G A 88 . DP=59;VDB=0.0271;AF1=0.5;AC1=1;DP4=24,13,14,6;MQ=60;FQ=91;PV4=0.77,7.6e-19,1,1 GT:PL:GQ 0/1:118,0,255:99 chr3 148562397 . G C 118 . DP=94;VDB=0.0365;AF1=0.5;AC1=1;DP4=23,21,29,15;MQ=60;FQ=121;PV4=0.28,1.4e-35,0.16,1 GT:PL:GQ 0/1:148,0,255:99 chr3 148562399 . G A 67 . DP=98;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,20,29,15;MQ=60;FQ=70;PV4=0.39,4.9e-45,0.16,1 GT:PL:GQ 0/1:97,0,255:99 chr3 148597612 . C T 225 . DP=102;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,23,38,17;MQ=60;FQ=225;PV4=0.066,0.18,1,0.17 GT:PL:GQ 0/1:255,0,255:99 chr3 148603859 . C A 203 . DP=73;VDB=0.0392;AF1=0.5;AC1=1;DP4=39,6,24,3;MQ=60;FQ=206;PV4=1,0.3,1,0.0095 GT:PL:GQ 0/1:233,0,255:99 chr3 148756825 . G A 33 . DP=23;VDB=0.0008;AF1=0.5;AC1=1;DP4=6,1,16,0;MQ=59;FQ=36;PV4=0.3,4.6e-11,0.26,0.26 GT:PL:GQ 0/1:63,0,125:66 chr3 148858987 . CTTTTTTTTTTTTT CTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTT 71.7 . INDEL;DP=44;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,5,6;MQ=46;FQ=-50.5 GT:PL:GQ 1/1:194,98,82,118,0,106,143,33,54,137:29 chr3 148868292 . GCCC GCC 20.3 . INDEL;DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:59,6,0:10 chr3 148868361 . C T 114 . DP=17;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,16,1;MQ=60;FQ=-78 GT:PL:GQ 1/1:147,51,0:99 chr3 148872987 . G A 143 . DP=32;VDB=0.0140;AF1=0.5;AC1=1;DP4=7,9,8,8;MQ=60;FQ=146;PV4=1,1.1e-12,1,1 GT:PL:GQ 0/1:173,0,255:99 chr3 148881673 . C T 134 . DP=13;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,6,3,3;MQ=60;FQ=130;PV4=0.27,1,1,1 GT:PL:GQ 0/1:164,0,158:99 chr3 148885077 . C T 39.5 . DP=4;VDB=0.0027;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:72,12,0:21 chr3 148885851 . G A 66 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:98,9,0:16 chr3 148896430 . A G 49 . DP=77;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,26,10,12;MQ=60;FQ=52;PV4=0.79,1.5e-24,1,0.23 GT:PL:GQ 0/1:79,0,255:82 chr3 148897498 . Tacacacacacacacacacacacacacacacacacacaca Tacacacacacacacacacacacacacacacacacaca,Tacacacacacacacacacacacacacacacacaca 53.4 . INDEL;DP=15;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:189,105,96,95,0,89:16 chr3 148900000 . G A 74 . DP=18;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,12,1,4;MQ=60;FQ=77;PV4=0.49,1,1,1 GT:PL:GQ 0/1:104,0,194:99 chr3 148916235 . T A 151 . DP=87;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,25,20,16;MQ=50;FQ=154;PV4=0.52,6.3e-16,1.2e-26,1 GT:PL:GQ 0/1:181,0,255:99 chr3 148930218 . G A 136 . DP=53;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,5,27,5;MQ=60;FQ=139;PV4=0.48,5.9e-18,1,0.27 GT:PL:GQ 0/1:166,0,255:99 chr3 148935893 . A G 98 . DP=14;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,7,0,6;MQ=60;FQ=100;PV4=1,1,1,1 GT:PL:GQ 0/1:128,0,136:99 chr3 149050925 . T C 85 . DP=38;VDB=0.0140;AF1=0.5;AC1=1;DP4=18,1,16,2;MQ=60;FQ=88;PV4=0.6,8.6e-20,1,0.38 GT:PL:GQ 0/1:115,0,218:99 chr3 149093238 . A G 164 . DP=50;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,41,5;MQ=59;FQ=-165 GT:PL:GQ 1/1:197,138,0:99 chr3 149192851 . GC GCC 214 . INDEL;DP=65;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,23,41;MQ=60;FQ=-228 GT:PL:GQ 1/1:255,193,0:99 chr3 149193684 . T C 222 . DP=48;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,16,28;MQ=59;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr3 149258087 . C T 173 . DP=114;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,36,20,33;MQ=60;FQ=176;PV4=1,4.2e-26,0.15,0.42 GT:PL:GQ 0/1:203,0,255:99 chr3 149258970 . CAAAAA CAAAA 20 . INDEL;DP=4;VDB=0.0082;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:60,12,0:21 chr3 149459341 . A G 141 . DP=71;VDB=0.0365;AF1=0.5;AC1=1;DP4=29,7,27,7;MQ=60;FQ=144;PV4=1,6.3e-19,1,1 GT:PL:GQ 0/1:171,0,255:99 chr3 149468530 . T G 225 . DP=75;VDB=0.0298;AF1=0.5;AC1=1;DP4=25,19,18,12;MQ=60;FQ=225;PV4=0.81,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 149479301 . C T 225 . DP=77;VDB=0.0399;AF1=0.5;AC1=1;DP4=16,24,15,19;MQ=60;FQ=225;PV4=0.81,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 149485293 . T C 107 . DP=112;VDB=0.0392;AF1=0.5;AC1=1;DP4=25,34,26,26;MQ=60;FQ=110;PV4=0.45,1.7e-48,1,0.41 GT:PL:GQ 0/1:137,0,255:99 chr3 149488309 . A G 84 . DP=38;VDB=0.0216;AF1=0.5;AC1=1;DP4=17,3,14,2;MQ=59;FQ=87;PV4=1,6.1e-12,1,1 GT:PL:GQ 0/1:114,0,255:99 chr3 149488442 . A G 225 . DP=174;VDB=0.0392;AF1=0.5;AC1=1;DP4=43,47,39,42;MQ=60;FQ=225;PV4=1,0.045,0.068,1 GT:PL:GQ 0/1:255,0,255:99 chr3 149497981 . C T 43 . DP=29;VDB=0.0140;AF1=0.5;AC1=1;DP4=14,5,8,2;MQ=60;FQ=46;PV4=1,1.3e-12,1,1 GT:PL:GQ 0/1:73,0,255:76 chr3 149498132 . C A 104 . DP=63;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,12,21,9;MQ=60;FQ=107;PV4=0.6,5.2e-25,1,1 GT:PL:GQ 0/1:134,0,255:99 chr3 149510262 . A G 60.1 . DP=6;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,6;MQ=56;FQ=-45 GT:PL:GQ 1/1:93,18,0:33 chr3 149564075 . A G 20.6 . DP=5;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:53,12,0:21 chr3 149678534 . C T 199 . DP=72;VDB=0.0271;AF1=1;AC1=2;DP4=1,0,54,16;MQ=60;FQ=-212;PV4=1,0.00049,1,1 GT:PL:GQ 1/1:232,185,0:99 chr3 149679148 . TAAAAAAAAAAAAA TAAAAAAAAAAAAAA,TAAAAAAAAAAAAAAA 12.7 . INDEL;DP=46;VDB=0.0399;AF1=1;AC1=2;DP4=1,1,16,14;MQ=59;FQ=-98.5;PV4=1,1,1,1 GT:PL:GQ 1/1:53,64,0,56,71,51:72 chr3 149686354 . AG A 48.5 . INDEL;DP=44;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,5,0,8;MQ=60;FQ=51.5;PV4=0.2,0.035,1,1 GT:PL:GQ 0/1:86,0,165:89 chr3 149686366 . AACACACACACA AACACACACA 51.5 . INDEL;DP=42;VDB=0.0399;AF1=0.5032;AC1=1;DP4=1,5,3,14;MQ=60;FQ=-15.6;PV4=1,1,1,0.096 GT:PL:GQ 0/1:89,0,19:22 chr3 149700519 . T C 177 . DP=79;VDB=0.0398;AF1=0.5;AC1=1;DP4=16,20,16,23;MQ=50;FQ=180;PV4=0.82,1.5e-18,1,0.11 GT:PL:GQ 0/1:207,0,255:99 chr3 150128154 . T C 55 . DP=43;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,9,13,3;MQ=60;FQ=58;PV4=0.32,7.6e-15,1,1 GT:PL:GQ 0/1:85,0,255:88 chr3 150128392 . G A 39 . DP=13;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,7,1,3;MQ=60;FQ=42;PV4=1,0.29,1,0.043 GT:PL:GQ 0/1:69,0,172:72 chr3 150128484 . C A 179 . DP=14;VDB=0.0373;AF1=0.5;AC1=1;DP4=3,1,6,4;MQ=60;FQ=43;PV4=1,1,1,0.13 GT:PL:GQ 0/1:209,0,70:73 chr3 150128994 . T G 184 . DP=132;VDB=0.0392;AF1=0.5;AC1=1;DP4=31,37,31,29;MQ=60;FQ=187;PV4=0.6,2e-31,1,1 GT:PL:GQ 0/1:214,0,255:99 chr3 150129171 . ATT ATTT 153 . INDEL;DP=16;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,14;MQ=60;FQ=-76.5 GT:PL:GQ 1/1:194,42,0:81 chr3 150264003 . G C 46 . DP=62;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,33,0,29;MQ=60;FQ=49;PV4=1,1.9e-18,0.14,1 GT:PL:GQ 0/1:76,0,174:79 chr3 150270077 . C G 127 . DP=8;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,7,0;MQ=60;FQ=-48 GT:PL:GQ 1/1:160,21,0:39 chr3 150276151 . A AT 108 . INDEL;DP=19;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,1,8,0;MQ=59;FQ=111;PV4=1,1,1,1 GT:PL:GQ 0/1:146,0,156:99 chr3 150276391 . A G 42 . DP=9;VDB=0.0133;AF1=0.5;AC1=1;DP4=0,6,0,3;MQ=60;FQ=45;PV4=1,1,1,0.39 GT:PL:GQ 0/1:72,0,123:75 chr3 150280253 . A T 87 . DP=12;VDB=0.0019;AF1=0.5;AC1=1;DP4=4,0,7,0;MQ=60;FQ=60;PV4=1,0.025,1,1 GT:PL:GQ 0/1:117,0,87:90 chr3 150280445 . C G 225 . DP=74;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,22,9,31;MQ=59;FQ=225;PV4=0.43,1,1,0.39 GT:PL:GQ 0/1:255,0,255:99 chr3 150280506 . GAAAAA GAAAA 78.5 . INDEL;DP=46;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,16,4,18;MQ=60;FQ=51.5;PV4=0.67,0.18,1,1 GT:PL:GQ 0/1:116,0,86:89 chr3 150283050 . C A 90 . DP=43;VDB=0.0384;AF1=0.5;AC1=1;DP4=1,22,2,17;MQ=59;FQ=93;PV4=0.58,8.6e-16,0.14,0.34 GT:PL:GQ 0/1:120,0,209:99 chr3 150285520 . T C 31 . DP=14;VDB=0.0042;AF1=0.5;AC1=1;DP4=5,1,7,1;MQ=60;FQ=34;PV4=1,1.6e-07,1,1 GT:PL:GQ 0/1:61,0,129:64 chr3 150285664 . A G 130 . DP=39;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,2,19,4;MQ=60;FQ=133;PV4=1,6.8e-13,1,1 GT:PL:GQ 0/1:160,0,209:99 chr3 150332282 . A G 28 . DP=18;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,2,5,2;MQ=60;FQ=31;PV4=1,1.2e-07,1,1 GT:PL:GQ 0/1:58,0,212:61 chr3 150384807 . T G 169 . DP=83;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,15,64;MQ=60;FQ=-231;PV4=0.2,1e-07,0.46,0.25 GT:PL:GQ 1/1:202,204,0:99 chr3 150403749 . T C 94 . DP=29;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,10,4,12;MQ=60;FQ=97;PV4=0.67,2.7e-11,1,1 GT:PL:GQ 0/1:124,0,198:99 chr3 150420588 . GTTAAA GTTAAATTAAA 214 . INDEL;DP=54;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,27,14;MQ=44;FQ=-158 GT:PL:GQ 1/1:255,123,0:99 chr3 150420608 . GTTTTTTTTTTTT GTTTTTTTTTTTTT,GTTTTTTTTTTTTTT 7.34 . INDEL;DP=61;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,5,16;MQ=48;FQ=-82.5 GT:PL:GQ 1/1:56,57,9,42,0,27:51 chr3 150420781 . cagagagagagagagagagaga cAGAGagagagagagagagagagaga 187 . INDEL;DP=10;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,4;MQ=52;FQ=-55.5 GT:PL:GQ 1/1:255,49,28:39 chr3 150421419 . G A 222 . DP=52;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,17,34;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr3 150603248 . GC GAAAAGCC 134 . INDEL;DP=111;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,37,16,25;MQ=51;FQ=137;PV4=1,1,8.5e-34,0.46 GT:PL:GQ 0/1:172,0,255:99 chr3 150625280 . G A 141 . DP=31;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,14,4,7;MQ=59;FQ=144;PV4=1,0.038,1,0.33 GT:PL:GQ 0/1:171,0,255:99 chr3 150834015 . G A 80 . DP=13;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:113,27,0:51 chr3 150883600 . C T 154 . DP=64;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,49,11;MQ=60;FQ=-208 GT:PL:GQ 1/1:187,181,0:99 chr3 150910640 . G C 13 . DP=5;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr3 151011969 . G A 215 . DP=26;VDB=0.0244;AF1=0.5;AC1=1;DP4=8,4,10,4;MQ=60;FQ=210;PV4=1,0.076,1,0.27 GT:PL:GQ 0/1:245,0,238:99 chr3 151012497 . T C 222 . DP=178;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,98,71;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 151012896 . C T 141 . DP=69;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,27,8,24;MQ=60;FQ=144;PV4=1,5.3e-27,1,1 GT:PL:GQ 0/1:171,0,255:99 chr3 151046308 . G A 222 . DP=42;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,25,17;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr3 151056598 . A C 218 . DP=64;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,21,41;MQ=60;FQ=-214 GT:PL:GQ 1/1:251,187,0:99 chr3 151056616 . G A 122 . DP=61;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,20,5,22;MQ=60;FQ=125;PV4=0.15,7.1e-19,1,0.48 GT:PL:GQ 0/1:152,0,255:99 chr3 151067730 . C T 44 . DP=5;VDB=0.0008;AF1=0.5016;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-6.18;PV4=1,1,1,1 GT:PL:GQ 0/1:74,0,22:25 chr3 151073033 . T C 108 . DP=63;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,24,3,32;MQ=60;FQ=111;PV4=1,2.9e-27,1,0.47 GT:PL:GQ 0/1:138,0,235:99 chr3 151073937 . T C 69 . DP=20;VDB=0.0019;AF1=0.5;AC1=1;DP4=0,5,1,14;MQ=60;FQ=59.7;PV4=1,3.1e-09,1,1 GT:PL:GQ 0/1:99,0,87:90 chr3 151074925 . A G 77 . DP=8;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=50;PV4=1,1,1,1 GT:PL:GQ 0/1:107,0,77:80 chr3 151074941 . A C 17.1 . DP=12;VDB=0.0140;AF1=0.5;AC1=1;DP4=5,1,6,0;MQ=60;FQ=20.1;PV4=1,1.2e-07,1,1 GT:PL:GQ 0/1:47,0,142:50 chr3 151078216 . A G 225 . DP=74;VDB=0.0298;AF1=0.5;AC1=1;DP4=34,3,31,3;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 151085578 . C A 159 . DP=78;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,21,18,16;MQ=60;FQ=162;PV4=0.82,4e-18,0.13,1 GT:PL:GQ 0/1:189,0,255:99 chr3 151090424 . G A 167 . DP=134;VDB=0.0392;AF1=0.5;AC1=1;DP4=30,32,36,34;MQ=60;FQ=170;PV4=0.86,4.7e-50,1,1 GT:PL:GQ 0/1:197,0,255:99 chr3 151090604 . G A 11.3 . DP=6;VDB=0.0017;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=60;FQ=14;PV4=1,0.00037,1,1 GT:PL:GQ 0/1:41,0,55:43 chr3 151094995 . G A 121 . DP=37;VDB=0.0053;AF1=0.5;AC1=1;DP4=2,22,0,12;MQ=59;FQ=124;PV4=0.54,1,1,1 GT:PL:GQ 0/1:151,0,247:99 chr3 151100677 . T G 27 . DP=9;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,4,1,4;MQ=60;FQ=30;PV4=1,2.5e-05,1,0.13 GT:PL:GQ 0/1:57,0,101:60 chr3 151101691 . C T 120 . DP=53;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,21,7,21;MQ=60;FQ=123;PV4=0.31,1.4e-27,1,0.4 GT:PL:GQ 0/1:150,0,255:99 chr3 151101746 . C T 169 . DP=22;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,10,1,11;MQ=60;FQ=129;PV4=1,1,1,0.14 GT:PL:GQ 0/1:199,0,156:99 chr3 151105992 . C T 124 . DP=60;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,25,4,28;MQ=60;FQ=127;PV4=1,4.4e-19,1,1 GT:PL:GQ 0/1:154,0,255:99 chr3 151143354 . ttgtgtgtgtgtgtgtgtgt tTGtgtgtgtgtgtgtgtgtgt 54.5 . INDEL;DP=3;VDB=0.0098;AF1=0.5001;AC1=1;DP4=1,0,2,0;MQ=60;FQ=3.25;PV4=1,1,1,0.33 GT:PL:GQ 0/1:92,0,35:38 chr3 151143447 . G T 180 . DP=21;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,14,6;MQ=60;FQ=-87 GT:PL:GQ 1/1:213,60,0:99 chr3 151154666 . T C 222 . DP=51;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,27,24;MQ=60;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr3 151155620 . G A 222 . DP=124;VDB=0.0400;AF1=1;AC1=2;DP4=0,1,66,52;MQ=60;FQ=-282;PV4=0.45,0.4,1,0.21 GT:PL:GQ 1/1:255,255,0:99 chr3 151158265 . G A 128 . DP=62;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,56,3;MQ=59;FQ=-205 GT:PL:GQ 1/1:161,178,0:99 chr3 151158502 . t tAG 214 . INDEL;DP=11;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-61.5 GT:PL:GQ 1/1:255,27,0:51 chr3 151165678 . T C 132 . DP=41;VDB=0.0373;AF1=0.5;AC1=1;DP4=15,7,13,6;MQ=59;FQ=135;PV4=1,2.2e-09,1,0.44 GT:PL:GQ 0/1:162,0,255:99 chr3 151166422 . C T 100 . DP=92;VDB=0.0399;AF1=0.5;AC1=1;DP4=30,29,15,17;MQ=59;FQ=103;PV4=0.83,6.7e-31,0.33,1 GT:PL:GQ 0/1:130,0,255:99 chr3 151171439 . A C 132 . DP=83;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,20,24,20;MQ=59;FQ=135;PV4=0.51,1.3e-27,0.1,1 GT:PL:GQ 0/1:162,0,255:99 chr3 151171542 . A G 225 . DP=48;VDB=0.0081;AF1=0.5;AC1=1;DP4=10,16,4,17;MQ=60;FQ=225;PV4=0.2,1,1,0.33 GT:PL:GQ 0/1:255,0,255:99 chr3 151283691 . C A 38 . DP=3;VDB=0.0224;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:70,9,0:16 chr3 151463421 . G T 203 . DP=33;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,15,17;MQ=59;FQ=-123 GT:PL:GQ 1/1:236,96,0:99 chr3 151545601 . G A 225 . DP=112;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,31,32,25;MQ=60;FQ=225;PV4=0.087,1,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr3 151597869 . T C 28 . DP=24;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,10,1,11;MQ=60;FQ=31;PV4=1,7.8e-12,1,1 GT:PL:GQ 0/1:58,0,186:61 chr3 151599393 . C T 58 . DP=17;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,15;MQ=60;FQ=-75 GT:PL:GQ 1/1:91,48,0:93 chr3 152058449 . A G 166 . DP=126;VDB=0.0365;AF1=0.5;AC1=1;DP4=30,35,27,33;MQ=59;FQ=169;PV4=1,1e-43,0.26,1 GT:PL:GQ 0/1:196,0,255:99 chr3 152554357 . A G 166 . DP=120;VDB=0.0400;AF1=0.5;AC1=1;DP4=19,41,26,32;MQ=60;FQ=169;PV4=0.18,5.5e-39,0.49,1 GT:PL:GQ 0/1:196,0,255:99 chr3 153839866 . G C 222 . DP=56;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,23;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr3 153847582 . T A 64 . DP=15;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:97,39,0:75 chr3 153970704 . CTTTT CTT 202 . INDEL;DP=12;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-70.5 GT:PL:GQ 1/1:243,36,0:69 chr3 153970796 . A G 217 . DP=60;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,44,15;MQ=60;FQ=-205 GT:PL:GQ 1/1:250,178,0:99 chr3 153972500 . T C 171 . DP=45;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,26,17;MQ=60;FQ=-156 GT:PL:GQ 1/1:204,129,0:99 chr3 153994502 . T C 127 . DP=27;VDB=0.0271;AF1=0.5;AC1=1;DP4=15,2,8,1;MQ=60;FQ=130;PV4=1,0.31,1,1 GT:PL:GQ 0/1:157,0,241:99 chr3 153995307 . A G 66 . DP=8;VDB=0.0002;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=41;PV4=1,1,1,1 GT:PL:GQ 0/1:96,0,68:71 chr3 154007682 . G C 187 . DP=14;VDB=0.0398;AF1=0.5;AC1=1;DP4=2,1,4,6;MQ=60;FQ=43;PV4=0.56,0.069,1,0.22 GT:PL:GQ 0/1:217,0,70:73 chr3 154018887 . G C 95 . DP=41;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,15,3,21;MQ=60;FQ=98;PV4=0.64,4.3e-18,1,0.39 GT:PL:GQ 0/1:125,0,193:99 chr3 154024165 . T C 6.2 . DP=5;VDB=0.0165;AF1=0.4999;AC1=1;DP4=0,3,0,2;MQ=60;FQ=8.65;PV4=1,0.23,1,1 GT:PL:GQ 0/1:35,0,69:36 chr3 154138978 . C T 225 . DP=122;VDB=0.0298;AF1=0.5;AC1=1;DP4=30,33,24,34;MQ=59;FQ=225;PV4=0.58,0.2,0.47,1 GT:PL:GQ 0/1:255,0,255:99 chr3 154146922 . A G 129 . DP=22;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,5,5,9;MQ=57;FQ=129;PV4=1,5.2e-08,0.46,1 GT:PL:GQ 0/1:159,0,160:99 chr3 154834379 . GTATATATATATATATAT GTATATATATATATAT 90.5 . INDEL;DP=20;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,6,2,2;MQ=60;FQ=93.5;PV4=1,0.46,1,1 GT:PL:GQ 0/1:128,0,255:99 chr3 154866453 . T C 126 . DP=75;VDB=0.0365;AF1=0.5;AC1=1;DP4=17,14,22,21;MQ=59;FQ=129;PV4=0.82,1.6e-33,0.11,0.16 GT:PL:GQ 0/1:156,0,255:99 chr3 154866545 . A C 80 . DP=37;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,15,5,14;MQ=59;FQ=83;PV4=0.41,1.5e-23,1,0.022 GT:PL:GQ 0/1:110,0,239:99 chr3 154878158 . GA G 42.5 . INDEL;DP=21;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,9,1,3;MQ=60;FQ=45.5;PV4=1,0.00048,1,0.19 GT:PL:GQ 0/1:80,0,255:83 chr3 154890206 . G A 40 . DP=9;VDB=0.0399;AF1=0.5;AC1=1;DP4=3,0,5,1;MQ=60;FQ=40.9;PV4=1,9e-05,1,0.19 GT:PL:GQ 0/1:70,0,72:71 chr3 155200461 . G A 225 . DP=136;VDB=0.0392;AF1=0.5;AC1=1;DP4=36,25,38,33;MQ=59;FQ=225;PV4=0.6,0.0033,1,0.46 GT:PL:GQ 0/1:255,0,255:99 chr3 155212325 . GAAAAAA GAAAAAAA 128 . INDEL;DP=43;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,6,31;MQ=59;FQ=-146 GT:PL:GQ 1/1:169,111,0:99 chr3 155214970 . T C 23 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:55,9,0:15 chr3 155241593 . A G 156 . DP=50;VDB=0.0011;AF1=0.5;AC1=1;DP4=22,0,27,0;MQ=60;FQ=148;PV4=1,1,0.19,1 GT:PL:GQ 0/1:186,0,175:99 chr3 155241740 . A G 145 . DP=266;VDB=0.0380;AF1=0.5;AC1=1;DP4=75,77,52,57;MQ=60;FQ=148;PV4=0.8,6.9e-98,1,1 GT:PL:GQ 0/1:175,0,255:99 chr3 155267774 . G A 77 . DP=47;VDB=0.0365;AF1=0.5;AC1=1;DP4=4,20,4,19;MQ=60;FQ=80;PV4=1,4e-26,1,1 GT:PL:GQ 0/1:107,0,255:99 chr3 155271825 . G A 53 . DP=39;VDB=0.0099;AF1=0.5;AC1=1;DP4=19,1,16,1;MQ=60;FQ=56;PV4=1,3.3e-15,1,1 GT:PL:GQ 0/1:83,0,213:86 chr3 155282960 . T C 210 . DP=25;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,8,2,14;MQ=59;FQ=137;PV4=1,0.27,1,0.19 GT:PL:GQ 0/1:240,0,164:99 chr3 155314034 . A G 222 . DP=33;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,21,10;MQ=58;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr3 155314114 . G A 196 . DP=30;VDB=0.0298;AF1=0.5;AC1=1;DP4=8,9,6,6;MQ=60;FQ=199;PV4=1,0.18,1,1 GT:PL:GQ 0/1:226,0,255:99 chr3 155461519 . AT A 194 . INDEL;DP=33;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,10,2,21;MQ=59;FQ=98.5;PV4=1,0.00026,0.26,1 GT:PL:GQ 0/1:232,0,133:99 chr3 155481609 . G A 132 . DP=33;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,7,11,5;MQ=60;FQ=135;PV4=0.72,5.5e-09,1,1 GT:PL:GQ 0/1:162,0,255:99 chr3 155485302 . C T 28 . DP=21;VDB=0.0118;AF1=0.5;AC1=1;DP4=11,1,8,0;MQ=59;FQ=31;PV4=1,8.4e-11,0.12,1 GT:PL:GQ 0/1:58,0,198:61 chr3 155611557 . T G 15.1 . DP=3;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:47,9,0:14 chr3 155637190 . A G 116 . DP=28;VDB=0.0099;AF1=0.5;AC1=1;DP4=1,11,4,12;MQ=60;FQ=119;PV4=0.36,1.7e-15,1,1 GT:PL:GQ 0/1:146,0,189:99 chr3 155639959 . A G 32 . DP=15;VDB=0.0234;AF1=0.5;AC1=1;DP4=9,2,4,0;MQ=60;FQ=35;PV4=1,0.034,1,1 GT:PL:GQ 0/1:62,0,215:65 chr3 155991348 . G T 96 . DP=27;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,7,5,6;MQ=58;FQ=99;PV4=1,6.5e-10,1,1 GT:PL:GQ 0/1:126,0,255:99 chr3 156175109 . C CTT 206 . INDEL;DP=17;VDB=0.0244;AF1=0.5;AC1=1;DP4=9,1,5,2;MQ=59;FQ=209;PV4=0.54,1,1,0.08 GT:PL:GQ 0/1:244,0,255:99 chr3 156175167 . G A 75 . DP=50;VDB=0.0345;AF1=0.5;AC1=1;DP4=21,8,13,6;MQ=60;FQ=78;PV4=1,2.7e-13,1,1 GT:PL:GQ 0/1:105,0,255:99 chr3 156175168 . G A 77 . DP=50;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,8,13,6;MQ=60;FQ=80;PV4=1,1.6e-21,1,1 GT:PL:GQ 0/1:107,0,255:99 chr3 156232303 . A T 104 . DP=49;VDB=0.0099;AF1=0.5;AC1=1;DP4=2,22,2,21;MQ=60;FQ=107;PV4=1,6e-20,0.16,1 GT:PL:GQ 0/1:134,0,247:99 chr3 156249407 . G C 28 . DP=3;VDB=0.0060;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:60,9,0:16 chr3 156266642 . C T 175 . DP=36;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,17;MQ=60;FQ=-129 GT:PL:GQ 1/1:208,102,0:99 chr3 156395329 . G T 15.2 . DP=4;VDB=0.0080;AF1=0.5016;AC1=1;DP4=1,0,3,0;MQ=60;FQ=-6.2;PV4=1,0.024,1,1 GT:PL:GQ 0/1:45,0,22:25 chr3 156399180 . G A 42 . DP=7;VDB=0.0002;AF1=0.5;AC1=1;DP4=0,2,0,5;MQ=60;FQ=25;PV4=1,0.00013,1,0.22 GT:PL:GQ 0/1:72,0,52:55 chr3 156411732 . A G 12 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr3 156431750 . A G 154 . DP=26;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,20,6;MQ=39;FQ=-105 GT:PL:GQ 1/1:187,78,0:99 chr3 156544584 . C T 183 . DP=88;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,38,43;MQ=60;FQ=-271 GT:PL:GQ 1/1:216,244,0:99 chr3 156547013 . C T 192 . DP=54;VDB=0.0271;AF1=0.5;AC1=1;DP4=26,3,20,3;MQ=60;FQ=195;PV4=1,0.047,1,1 GT:PL:GQ 0/1:222,0,255:99 chr3 156697097 . G A 116 . DP=25;VDB=0.0400;AF1=0.5;AC1=1;DP4=1,11,4,9;MQ=58;FQ=119;PV4=0.32,1.7e-09,1,0.43 GT:PL:GQ 0/1:146,0,188:99 chr3 157004323 . A C 225 . DP=88;VDB=0.0365;AF1=0.5;AC1=1;DP4=24,19,25,19;MQ=60;FQ=225;PV4=1,0.42,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 157082082 . C CAA 203 . INDEL;DP=15;VDB=0.0081;AF1=0.5;AC1=1;DP4=7,1,6,1;MQ=60;FQ=206;PV4=1,1,1,0.41 GT:PL:GQ 0/1:241,0,255:99 chr3 157154861 . A G 225 . DP=106;VDB=0.0271;AF1=0.5;AC1=1;DP4=11,34,18,40;MQ=60;FQ=225;PV4=0.51,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 157155314 . C A 15.1 . DP=13;VDB=0.0313;AF1=0.5;AC1=1;DP4=6,3,4,0;MQ=60;FQ=18.1;PV4=0.5,4.1e-07,1,0.36 GT:PL:GQ 0/1:45,0,212:48 chr3 157178227 . T C 23 . DP=9;VDB=0.0143;AF1=0.5;AC1=1;DP4=0,5,1,3;MQ=60;FQ=26;PV4=0.44,1.6e-05,1,1 GT:PL:GQ 0/1:53,0,117:56 chr3 158178856 . G A 222 . DP=33;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,11,22;MQ=60;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr3 158254806 . A G 65 . DP=19;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,16,1;MQ=60;FQ=-78 GT:PL:GQ 1/1:98,51,0:99 chr3 158300732 . A G 183 . DP=9;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,3,6;MQ=60;FQ=-54 GT:PL:GQ 1/1:216,27,0:51 chr3 158306627 . A G 194 . DP=69;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,50,17;MQ=59;FQ=-229 GT:PL:GQ 1/1:227,202,0:99 chr3 158308875 . T C 172 . DP=8;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,5,3;MQ=51;FQ=-51 GT:PL:GQ 1/1:205,24,0:45 chr3 158310153 . A G 79 . DP=17;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,15,0;MQ=60;FQ=-72 GT:PL:GQ 1/1:112,45,0:87 chr3 158310391 . CAGTTAGT CAGT 217 . INDEL;DP=60;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,29,3,18;MQ=57;FQ=217;PV4=0.67,1.6e-06,0.00013,0.44 GT:PL:GQ 0/1:255,0,255:99 chr3 158310483 . G T 86.5 . DP=5;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:119,12,0:21 chr3 158314810 . C G 105 . DP=8;VDB=0.0118;AF1=0.5939;AC1=1;DP4=0,1,0,7;MQ=57;FQ=-22;PV4=1,0.33,1,0.27 GT:PL:GQ 0/1:134,0,5:8 chr3 158314846 . A G 32.8 . DP=2;VDB=0.0184;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:64,6,0:10 chr3 158320597 . T C,A 109 . DP=6;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-42 GT:PL:GQ 1/1:158,31,16,134,0,131:27 chr3 158320703 . C A 47.5 . DP=5;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:80,12,0:21 chr3 158362391 . C T 6.98 . DP=5;VDB=0.0129;AF1=0.4999;AC1=1;DP4=3,0,1,1;MQ=55;FQ=9.53;PV4=0.4,0.052,1,1 GT:PL:GQ 0/1:36,0,76:37 chr3 158362441 . T C 140 . DP=16;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,14,2;MQ=56;FQ=-75 GT:PL:GQ 1/1:173,48,0:93 chr3 158362526 . A G 34 . DP=35;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,9,5,5;MQ=59;FQ=37;PV4=0.71,1.7e-10,1,0.12 GT:PL:GQ 0/1:64,0,255:67 chr3 158362588 . C G 56 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,10,6,5;MQ=59;FQ=59;PV4=0.43,3.8e-11,0.13,1 GT:PL:GQ 0/1:86,0,255:89 chr3 158366900 . G A 155 . DP=10;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,10;MQ=60;FQ=-57 GT:PL:GQ 1/1:188,30,0:57 chr3 158367837 . C T 58 . DP=22;VDB=0.0140;AF1=0.5;AC1=1;DP4=8,6,3,5;MQ=60;FQ=61;PV4=0.66,1.7e-08,1,1 GT:PL:GQ 0/1:88,0,255:91 chr3 158372477 . C T 18.1 . DP=23;VDB=0.0019;AF1=0.5;AC1=1;DP4=5,11,2,4;MQ=59;FQ=21;PV4=1,3.9e-10,1,1 GT:PL:GQ 0/1:48,0,255:51 chr3 158372502 . T C 6.2 . DP=15;VDB=0.0187;AF1=0.4999;AC1=1;DP4=1,11,1,2;MQ=58;FQ=8.65;PV4=0.37,0.00069,1,0.22 GT:PL:GQ 0/1:35,0,199:36 chr3 158384068 . A G 37 . DP=22;VDB=0.0190;AF1=0.5;AC1=1;DP4=12,0,10,0;MQ=58;FQ=40;PV4=1,2.3e-07,0.057,1 GT:PL:GQ 0/1:67,0,147:70 chr3 158386737 . C T 16.1 . DP=6;VDB=0.0017;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=18.8;PV4=1,0.0023,1,0.35 GT:PL:GQ 0/1:46,0,58:49 chr3 158388780 . T C 211 . DP=22;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,21,1;MQ=58;FQ=-93 GT:PL:GQ 1/1:244,66,0:99 chr3 158409093 . CAAAAAA CAAAAAAA 65.5 . INDEL;DP=31;VDB=0.0380;AF1=0.5;AC1=1;DP4=8,3,12,8;MQ=59;FQ=15.6;PV4=0.7,1,0.23,1 GT:PL:GQ 0/1:103,0,50:53 chr3 158409262 . C T 28 . DP=19;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,11,1,5;MQ=59;FQ=31;PV4=1,2.3e-05,0.073,0.0043 GT:PL:GQ 0/1:58,0,230:61 chr3 158422506 . G A 143 . DP=9;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:176,24,0:45 chr3 158428642 . G A 169 . DP=123;VDB=0.0345;AF1=0.5;AC1=1;DP4=36,27,30,27;MQ=59;FQ=172;PV4=0.71,5.2e-40,1,1 GT:PL:GQ 0/1:199,0,255:99 chr3 158428809 . AAGGCAGGCAGGC AAGGCAGGCAGGCAGGC 118 . INDEL;DP=25;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,9,0,6;MQ=56;FQ=121;PV4=1,1,0.0052,1 GT:PL:GQ 0/1:156,0,255:99 chr3 158431508 . A G 138 . DP=57;VDB=0.0298;AF1=0.5;AC1=1;DP4=24,4,27,0;MQ=59;FQ=141;PV4=0.11,0.21,0.49,1 GT:PL:GQ 0/1:168,0,255:99 chr3 158431702 . A T 82 . DP=60;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,25,2,23;MQ=59;FQ=85;PV4=0.28,9.3e-25,0.44,1 GT:PL:GQ 0/1:112,0,255:99 chr3 158449965 . T C 77.5 . DP=4;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,1,3;MQ=54;FQ=-39 GT:PL:GQ 1/1:110,12,0:21 chr3 158450178 . A G 111 . DP=18;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,0,9,4;MQ=59;FQ=38;PV4=0.52,3.9e-09,0.3,0.068 GT:PL:GQ 0/1:141,0,65:68 chr3 158520483 . A G 156 . DP=24;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,21;MQ=57;FQ=-96 GT:PL:GQ 1/1:189,69,0:99 chr3 158537415 . ctttttttttttttttt cttttttttttt 89.6 . INDEL;DP=6;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,5,1;MQ=36;FQ=-52.5 GT:PL:GQ 1/1:130,18,0:33 chr3 158537443 . A G 222 . DP=37;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,31,3;MQ=54;FQ=-129 GT:PL:GQ 1/1:255,102,0:99 chr3 158538056 . T C 204 . DP=32;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,10,20;MQ=59;FQ=-117 GT:PL:GQ 1/1:237,90,0:99 chr3 158539294 . G A 55.5 . DP=4;VDB=0.0318;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:88,12,0:21 chr3 158539496 . A G 58 . DP=3;VDB=0.0215;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:90,9,0:16 chr3 158970714 . T C 63.5 . DP=5;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:96,12,0:21 chr3 158991724 . A T 169 . DP=39;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,6,29;MQ=59;FQ=-132 GT:PL:GQ 1/1:202,105,0:99 chr3 159558088 . G A 85 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,10,2,10;MQ=59;FQ=88;PV4=0.4,4.2e-07,1,1 GT:PL:GQ 0/1:115,0,255:99 chr3 159733692 . T C 23 . DP=14;VDB=0.0219;AF1=0.5;AC1=1;DP4=6,3,4,1;MQ=58;FQ=26;PV4=1,0.013,1,0.14 GT:PL:GQ 0/1:53,0,190:56 chr3 159736893 . T C 75 . DP=89;VDB=0.0392;AF1=0.5;AC1=1;DP4=35,14,33,3;MQ=60;FQ=78;PV4=0.028,1.2e-28,1,1 GT:PL:GQ 0/1:105,0,255:99 chr3 159737076 . G A 225 . DP=76;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,28,9,31;MQ=60;FQ=225;PV4=0.77,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 159738355 . C G 46 . DP=39;VDB=0.0066;AF1=0.5;AC1=1;DP4=15,15,4,5;MQ=59;FQ=49;PV4=1,2.5e-07,0.034,0.36 GT:PL:GQ 0/1:76,0,255:79 chr3 159744277 . C T 77.5 . DP=4;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:110,12,0:21 chr3 159744352 . C T 222 . DP=25;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,16,7;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr3 159744438 . C T 178 . DP=54;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,26,21;MQ=59;FQ=-168 GT:PL:GQ 1/1:211,141,0:99 chr3 159744440 . C T 189 . DP=55;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,27,21;MQ=59;FQ=-171 GT:PL:GQ 1/1:222,144,0:99 chr3 159995356 . A G 222 . DP=42;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,6,15,3;MQ=60;FQ=223;PV4=0.71,0.21,1,0.34 GT:PL:GQ 0/1:252,0,255:99 chr3 159997061 . T A 132 . DP=63;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,24,12,12;MQ=60;FQ=135;PV4=0.44,4e-17,1,1 GT:PL:GQ 0/1:162,0,255:99 chr3 160000304 . A G 13 . DP=2;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:44,6,0:9 chr3 160021681 . G A 36 . DP=24;VDB=0.0216;AF1=0.5;AC1=1;DP4=12,5,3,4;MQ=60;FQ=39;PV4=0.36,3.2e-08,1,1 GT:PL:GQ 0/1:66,0,255:69 chr3 160130110 . G A 147 . DP=16;VDB=0.0140;AF1=0.5;AC1=1;DP4=5,3,6,2;MQ=60;FQ=150;PV4=1,0.072,1,0.49 GT:PL:GQ 0/1:177,0,200:99 chr3 160135428 . C T 7.8 . DP=9;VDB=0.0011;AF1=0.5;AC1=1;DP4=5,0,3,0;MQ=60;FQ=10.4;PV4=1,0.0078,1,0.28 GT:PL:GQ 0/1:37,0,110:39 chr3 160142618 . A C 43 . DP=15;VDB=0.0081;AF1=0.5;AC1=1;DP4=7,0,7,1;MQ=58;FQ=46;PV4=1,8.8e-09,1,0.45 GT:PL:GQ 0/1:73,0,136:76 chr3 160148756 . C T 9.52 . DP=8;VDB=0.0181;AF1=0.5;AC1=1;DP4=3,2,2,1;MQ=60;FQ=12.3;PV4=1,0.0012,1,1 GT:PL:GQ 0/1:39,0,141:41 chr3 160156951 . C T 16.1 . DP=15;VDB=0.0373;AF1=0.5;AC1=1;DP4=2,8,0,5;MQ=60;FQ=19.1;PV4=0.52,4.6e-07,1,1 GT:PL:GQ 0/1:46,0,207:49 chr3 160283126 . A C 46 . DP=15;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,5,0,10;MQ=60;FQ=49;PV4=1,4.4e-08,1,1 GT:PL:GQ 0/1:76,0,98:79 chr3 160679422 . T C 4.77 . DP=8;VDB=0.0059;AF1=0.4999;AC1=1;DP4=4,0,4,0;MQ=60;FQ=6.99;PV4=1,2.1e-06,1,0.18 GT:PL:GQ 0/1:33,0,105:33 chr3 160821929 . T C 38 . DP=15;VDB=0.0042;AF1=0.5;AC1=1;DP4=8,0,6,0;MQ=60;FQ=41;PV4=1,2.3e-05,1,0.36 GT:PL:GQ 0/1:68,0,139:71 chr3 160821969 . A G 126 . DP=44;VDB=0.0190;AF1=0.5;AC1=1;DP4=20,3,17,3;MQ=60;FQ=129;PV4=1,3.8e-11,1,0.34 GT:PL:GQ 0/1:156,0,255:99 chr3 160955879 . G T 8.64 . DP=9;VDB=0.0180;AF1=0.5;AC1=1;DP4=5,0,4,0;MQ=57;FQ=11.3;PV4=1,0.0025,0.15,1 GT:PL:GQ 0/1:38,0,113:40 chr3 160964271 . G A 96 . DP=29;VDB=0.0392;AF1=0.5;AC1=1;DP4=6,6,9,8;MQ=60;FQ=99;PV4=1,1.4e-14,1,1 GT:PL:GQ 0/1:126,0,235:99 chr3 160967354 . G A 225 . DP=29;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,9,6,8;MQ=59;FQ=225;PV4=1,1,0.16,0.21 GT:PL:GQ 0/1:255,0,255:99 chr3 161064193 . A T 85 . DP=11;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,4,0,7;MQ=60;FQ=52;PV4=1,0.25,1,0.089 GT:PL:GQ 0/1:115,0,79:82 chr3 161090616 . C T 7.8 . DP=5;VDB=0.0041;AF1=0.5007;AC1=1;DP4=0,1,0,3;MQ=60;FQ=-4.28;PV4=1,0.014,1,1 GT:PL:GQ 0/1:37,0,25:29 chr3 161221705 . A C 115 . DP=43;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,27,2,8;MQ=59;FQ=118;PV4=1,0.45,0.037,1 GT:PL:GQ 0/1:145,0,255:99 chr3 164059123 . G A 138 . DP=23;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,6,7,6;MQ=60;FQ=141;PV4=0.41,2.1e-07,1,1 GT:PL:GQ 0/1:168,0,181:99 chr3 164697082 . A G 57 . DP=28;VDB=0.0298;AF1=0.5;AC1=1;DP4=14,2,9,3;MQ=60;FQ=60;PV4=0.62,2.1e-14,1,0.44 GT:PL:GQ 0/1:87,0,238:90 chr3 164699998 . C T 161 . DP=32;VDB=0.0066;AF1=0.5;AC1=1;DP4=17,0,12,1;MQ=60;FQ=154;PV4=0.43,0.41,1,0.12 GT:PL:GQ 0/1:191,0,181:99 chr3 164700734 . C T 33 . DP=6;VDB=0.0322;AF1=0.5;AC1=1;DP4=1,1,3,1;MQ=60;FQ=32.5;PV4=1,0.0041,1,0.27 GT:PL:GQ 0/1:63,0,62:62 chr3 164714296 . C T 18.1 . DP=25;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,1,7,0;MQ=60;FQ=21;PV4=1,2.7e-09,1,1 GT:PL:GQ 0/1:48,0,212:51 chr3 164714532 . C T 36.8 . DP=2;VDB=0.0147;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:68,6,0:10 chr3 164730804 . T C 143 . DP=33;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,2,9,10;MQ=59;FQ=146;PV4=0.033,3.6e-17,1,1 GT:PL:GQ 0/1:173,0,212:99 chr3 164733721 . G A 91 . DP=47;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,3,19,1;MQ=60;FQ=94;PV4=0.62,1.1e-16,1,1 GT:PL:GQ 0/1:121,0,255:99 chr3 164741609 . T C 208 . DP=29;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,10,2,13;MQ=60;FQ=181;PV4=1,1,1,1 GT:PL:GQ 0/1:238,0,208:99 chr3 164755664 . T C 19.1 . DP=51;VDB=0.0099;AF1=0.5;AC1=1;DP4=21,4,21,1;MQ=60;FQ=22;PV4=0.35,2e-30,1,1 GT:PL:GQ 0/1:49,0,255:52 chr3 164758630 . G A 4.77 . DP=3;VDB=0.0196;AF1=0.5003;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-3.1;PV4=1,0.039,1,1 GT:PL:GQ 0/1:33,0,28:30 chr3 164760771 . T C 103 . DP=9;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,1,4,1;MQ=60;FQ=81;PV4=1,1,1,1 GT:PL:GQ 0/1:133,0,108:99 chr3 164764719 . C A 225 . DP=107;VDB=0.0365;AF1=0.5;AC1=1;DP4=26,38,17,24;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 164766816 . C A 19 . DP=3;VDB=0.0080;AF1=1;AC1=2;DP4=0,0,3,0;MQ=52;FQ=-36 GT:PL:GQ 1/1:51,9,0:15 chr3 164766835 . T C 39 . DP=12;VDB=0.0042;AF1=0.5;AC1=1;DP4=4,0,7,0;MQ=58;FQ=42;PV4=1,8.9e-05,0.24,1 GT:PL:GQ 0/1:69,0,90:72 chr3 164772957 . C T 49 . DP=23;VDB=0.0140;AF1=0.5;AC1=1;DP4=13,0,9,1;MQ=60;FQ=52;PV4=0.43,3.5e-22,1,1 GT:PL:GQ 0/1:79,0,177:82 chr3 164773057 . G A 88 . DP=31;VDB=0.0244;AF1=0.5;AC1=1;DP4=2,14,3,12;MQ=60;FQ=91;PV4=0.65,1.1e-15,1,1 GT:PL:GQ 0/1:118,0,233:99 chr3 164776913 . C CAT 217 . INDEL;DP=87;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,29,16,22;MQ=60;FQ=217;PV4=1,1,0.13,0.23 GT:PL:GQ 0/1:255,0,255:99 chr3 164777677 . T G 84 . DP=27;VDB=0.0345;AF1=0.5;AC1=1;DP4=10,2,10,4;MQ=60;FQ=87;PV4=0.65,5.2e-13,1,1 GT:PL:GQ 0/1:114,0,204:99 chr3 164783165 . T C 102 . DP=14;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,4,3,7;MQ=60;FQ=59;PV4=0.51,1.5e-06,1,0.1 GT:PL:GQ 0/1:132,0,86:89 chr3 164785338 . G A 6.2 . DP=3;VDB=0.0180;AF1=0.5003;AC1=1;DP4=0,1,0,2;MQ=52;FQ=3.12;PV4=1,0.099,0.33,1 GT:PL:GQ 0/1:35,0,28:31 chr3 164786396 . T C 13.2 . DP=15;VDB=0.0042;AF1=0.5;AC1=1;DP4=10,0,5,0;MQ=60;FQ=16.1;PV4=1,8.7e-10,1,0.33 GT:PL:GQ 0/1:43,0,167:46 chr3 164786413 . A G 4.13 . DP=19;VDB=0.0042;AF1=0.4998;AC1=1;DP4=14,0,5,0;MQ=60;FQ=6.2;PV4=1,8.2e-07,1,1 GT:PL:GQ 0/1:32,0,176:31 chr3 164793648 . C A 50 . DP=17;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,2,4,3;MQ=59;FQ=53;PV4=0.6,3.9e-11,1,0.3 GT:PL:GQ 0/1:80,0,202:83 chr3 164793758 . C A 34 . DP=15;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,8,1,6;MQ=58;FQ=37;PV4=0.47,5e-07,1,1 GT:PL:GQ 0/1:64,0,145:67 chr3 165495400 . G A 55 . DP=14;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,13,1;MQ=58;FQ=-69 GT:PL:GQ 1/1:88,42,0:81 chr3 165495420 . G C 185 . DP=26;VDB=0.0140;AF1=0.5;AC1=1;DP4=11,1,10,4;MQ=59;FQ=165;PV4=0.33,0.018,0.18,0.065 GT:PL:GQ 0/1:215,0,192:99 chr3 166958749 . G A 53 . DP=51;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,20,1,25;MQ=60;FQ=56;PV4=1,1.6e-26,1,1 GT:PL:GQ 0/1:83,0,207:86 chr3 166966436 . C T 109 . DP=31;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,4,7,8;MQ=60;FQ=112;PV4=0.26,4.6e-11,1,0.41 GT:PL:GQ 0/1:139,0,253:99 chr3 167000256 . G C 70 . DP=30;VDB=0.0099;AF1=0.5;AC1=1;DP4=2,13,2,13;MQ=60;FQ=73;PV4=1,7.2e-20,1,1 GT:PL:GQ 0/1:100,0,228:99 chr3 167006568 . G T 61 . DP=39;VDB=0.0066;AF1=0.5;AC1=1;DP4=16,1,19,1;MQ=60;FQ=64;PV4=1,3.4e-16,1,1 GT:PL:GQ 0/1:91,0,192:94 chr3 167006612 . G T 136 . DP=76;VDB=0.0298;AF1=0.5;AC1=1;DP4=29,4,37,6;MQ=60;FQ=139;PV4=1,4.6e-27,1,1 GT:PL:GQ 0/1:166,0,255:99 chr3 167035501 . G A 85.5 . DP=4;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:118,12,0:21 chr3 167051726 . A G 62 . DP=16;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,4,1,8;MQ=60;FQ=65;PV4=0.53,0.00032,1,0.32 GT:PL:GQ 0/1:92,0,134:95 chr3 167077691 . T A 138 . DP=11;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,5,6;MQ=58;FQ=-60 GT:PL:GQ 1/1:171,33,0:63 chr3 167078544 . T C 131 . DP=11;VDB=0.0400;AF1=0.5;AC1=1;DP4=0,3,2,5;MQ=60;FQ=48;PV4=1,0.034,1,0.24 GT:PL:GQ 0/1:161,0,75:78 chr3 167248873 . C T 35 . DP=6;VDB=0.0334;AF1=0.5;AC1=1;DP4=1,1,3,1;MQ=60;FQ=24.8;PV4=1,0.0077,1,0.11 GT:PL:GQ 0/1:65,0,52:55 chr3 167351418 . T C 46 . DP=32;VDB=0.0081;AF1=0.5;AC1=1;DP4=0,17,0,14;MQ=60;FQ=49;PV4=1,1.2e-14,1,0.14 GT:PL:GQ 0/1:76,0,178:79 chr3 167745703 . A G 52 . DP=8;VDB=0.0008;AF1=0.5;AC1=1;DP4=1,2,1,4;MQ=60;FQ=51.5;PV4=1,0.0013,1,0.45 GT:PL:GQ 0/1:82,0,81:81 chr3 168269756 . A G 181 . DP=30;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,7,1,16;MQ=59;FQ=173;PV4=0.056,1,0.21,1 GT:PL:GQ 0/1:211,0,200:99 chr3 168538993 . A G 152 . DP=30;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,25,5;MQ=60;FQ=-117 GT:PL:GQ 1/1:185,90,0:99 chr3 168542454 . Tcacacacacacacacacacacacacacacac TCACAcacacacacacacacacacacacacacacac 66.5 . INDEL;DP=10;VDB=0.0014;AF1=0.5;AC1=1;DP4=6,0,4,0;MQ=58;FQ=69.5;PV4=1,1,0.12,1 GT:PL:GQ 0/1:104,0,136:99 chr3 168546914 . C T 122 . DP=68;VDB=0.0392;AF1=0.5;AC1=1;DP4=24,9,24,7;MQ=60;FQ=125;PV4=0.78,6.6e-27,1,1 GT:PL:GQ 0/1:152,0,255:99 chr3 168840571 . A T 92 . DP=15;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,15;MQ=60;FQ=-72 GT:PL:GQ 1/1:125,45,0:87 chr3 168840607 . C T 65 . DP=3;VDB=0.0107;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:97,9,0:16 chr3 169098992 . G A 104 . DP=168;VDB=0.0345;AF1=0.5;AC1=1;DP4=54,40,45,25;MQ=59;FQ=107;PV4=0.42,2.6e-56,1,1 GT:PL:GQ 0/1:134,0,255:99 chr3 169283921 . C T 128 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,3,2;MQ=60;FQ=-42 GT:PL:GQ 1/1:161,15,0:27 chr3 169486144 . A G 152 . DP=33;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,8,22;MQ=60;FQ=-117 GT:PL:GQ 1/1:185,90,0:99 chr3 169492016 . TA TAA 174 . INDEL;DP=25;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,25,0;MQ=60;FQ=-110 GT:PL:GQ 1/1:215,75,0:99 chr3 169492101 . C T 222 . DP=100;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,62,35;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 169514585 . A T 215 . DP=43;VDB=0.0392;AF1=1;AC1=2;DP4=0,1,26,15;MQ=60;FQ=-131;PV4=0.38,1,1,0.22 GT:PL:GQ 1/1:248,104,0:99 chr3 169518455 . T C 152 . DP=16;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,10,6;MQ=60;FQ=-75 GT:PL:GQ 1/1:185,48,0:93 chr3 169526272 . T C 101 . DP=6;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:134,15,0:27 chr3 169539812 . C G 225 . DP=99;VDB=0.0400;AF1=0.5;AC1=1;DP4=41,20,22,13;MQ=59;FQ=225;PV4=0.66,0.21,0.01,0.081 GT:PL:GQ 0/1:255,0,255:99 chr3 169539990 . G A 184 . DP=117;VDB=0.0400;AF1=0.5;AC1=1;DP4=38,11,39,26;MQ=59;FQ=187;PV4=0.068,9.8e-36,1,0.076 GT:PL:GQ 0/1:214,0,255:99 chr3 169540397 . T C 165 . DP=129;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,65,57;MQ=60;FQ=-282 GT:PL:GQ 1/1:198,255,0:99 chr3 169550759 . G A 54 . DP=42;VDB=0.0345;AF1=1;AC1=2;DP4=1,0,33,2;MQ=60;FQ=-97;PV4=1,4.7e-08,1,0.21 GT:PL:GQ 1/1:87,70,0:99 chr3 169555162 . TTCTCTC TTCTC 119 . INDEL;DP=17;VDB=0.0025;AF1=0.5;AC1=1;DP4=11,0,6,0;MQ=60;FQ=122;PV4=1,2.5e-09,1,1 GT:PL:GQ 0/1:157,0,255:99 chr3 169557842 . C T 108 . DP=90;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,16,32,17;MQ=60;FQ=111;PV4=0.51,5.5e-41,0.19,1 GT:PL:GQ 0/1:138,0,255:99 chr3 169558025 . C T 137 . DP=50;VDB=0.0322;AF1=1;AC1=2;DP4=0,1,14,31;MQ=59;FQ=-134;PV4=1,4.3e-05,0.44,0.28 GT:PL:GQ 1/1:170,107,0:99 chr3 169566090 . A G 214 . DP=46;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,34;MQ=59;FQ=-156 GT:PL:GQ 1/1:247,129,0:99 chr3 169569374 . A G 225 . DP=49;VDB=0.0190;AF1=0.5;AC1=1;DP4=17,4,17,10;MQ=60;FQ=225;PV4=0.21,0.44,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 169569432 . C G 157 . DP=60;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,18,15,13;MQ=60;FQ=160;PV4=0.44,2e-15,0.15,0.12 GT:PL:GQ 0/1:187,0,255:99 chr3 169574465 . T G 31 . DP=141;VDB=0.0399;AF1=0.5;AC1=1;DP4=38,30,15,21;MQ=60;FQ=34;PV4=0.22,1.5e-36,0.32,0.22 GT:PL:GQ 0/1:61,0,255:64 chr3 169654095 . A G 132 . DP=40;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,1,17,5;MQ=59;FQ=135;PV4=0.21,4.8e-11,1,0.03 GT:PL:GQ 0/1:162,0,191:99 chr3 169894680 . G A 50 . DP=22;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,4,10,2;MQ=60;FQ=53;PV4=0.35,9.9e-14,1,1 GT:PL:GQ 0/1:80,0,216:83 chr3 170078232 . C T 222 . DP=141;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,77,56;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 170105233 . C T 47 . DP=23;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,21,0;MQ=60;FQ=-90 GT:PL:GQ 1/1:80,63,0:99 chr3 170105378 . C T 222 . DP=66;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,16,49;MQ=59;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr3 170150212 . G A 5.46 . DP=5;VDB=0.0070;AF1=0.4999;AC1=1;DP4=2,0,2,0;MQ=60;FQ=7.63;PV4=1,0.096,1,0.23 GT:PL:GQ 0/1:34,0,47:34 chr3 170184933 . C T 129 . DP=133;VDB=0.0345;AF1=0.5;AC1=1;DP4=20,45,24,39;MQ=59;FQ=132;PV4=0.46,3.8e-42,1,1 GT:PL:GQ 0/1:159,0,255:99 chr3 170197954 . T G 10.4 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:42,9,0:13 chr3 170198898 . C T 63 . DP=42;VDB=0.0380;AF1=0.5;AC1=1;DP4=4,19,5,12;MQ=60;FQ=66;PV4=0.46,1.1e-12,1,1 GT:PL:GQ 0/1:93,0,255:96 chr3 170198967 . G A 28 . DP=9;VDB=0.0011;AF1=0.5;AC1=1;DP4=1,2,0,5;MQ=60;FQ=31;PV4=0.37,0.00026,1,0.23 GT:PL:GQ 0/1:58,0,86:61 chr3 170204206 . T A 100 . DP=27;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,14,0,9;MQ=60;FQ=103;PV4=0.27,0.2,1,0.22 GT:PL:GQ 0/1:130,0,255:99 chr3 170586057 . C T 49 . DP=4;VDB=0.0175;AF1=0.5005;AC1=1;DP4=1,0,0,3;MQ=54;FQ=3.02;PV4=0.25,0.33,0.33,1 GT:PL:GQ 0/1:79,0,27:30 chr3 170715830 . G A 136 . DP=114;VDB=0.0398;AF1=0.5;AC1=1;DP4=29,26,25,33;MQ=59;FQ=139;PV4=0.35,4.4e-41,0.044,0.1 GT:PL:GQ 0/1:166,0,255:99 chr3 170723276 . G A 44 . DP=10;VDB=0.0004;AF1=0.5;AC1=1;DP4=0,3,0,7;MQ=60;FQ=44.5;PV4=1,2.1e-08,1,0.38 GT:PL:GQ 0/1:74,0,75:74 chr3 170723664 . A G 28 . DP=32;VDB=0.0019;AF1=0.5;AC1=1;DP4=12,1,17,1;MQ=59;FQ=31;PV4=1,3.4e-19,0.2,0.22 GT:PL:GQ 0/1:58,0,193:61 chr3 170723668 . C T 71 . DP=33;VDB=0.0033;AF1=0.5;AC1=1;DP4=12,1,19,1;MQ=59;FQ=74;PV4=1,1.2e-17,0.21,0.2 GT:PL:GQ 0/1:101,0,190:99 chr3 170724883 . T C 150 . DP=54;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,12,14,9;MQ=60;FQ=153;PV4=1,2.9e-19,1,1 GT:PL:GQ 0/1:180,0,255:99 chr3 170724955 . C T 132 . DP=61;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,15,16,15;MQ=60;FQ=135;PV4=0.8,1.1e-21,1,1 GT:PL:GQ 0/1:162,0,255:99 chr3 170727739 . T A 22 . DP=21;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,0,7,1;MQ=51;FQ=25;PV4=1,8.5e-05,0.00021,1 GT:PL:GQ 0/1:52,0,118:55 chr3 170732300 . G A 169 . DP=116;VDB=0.0380;AF1=0.5;AC1=1;DP4=39,17,31,25;MQ=60;FQ=172;PV4=0.17,9.6e-34,1,1 GT:PL:GQ 0/1:199,0,255:99 chr3 170825905 . C G 222 . DP=36;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,18,17;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr3 170857240 . T C 73 . DP=21;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,1,10,1;MQ=60;FQ=76;PV4=1,1.1e-05,1,1 GT:PL:GQ 0/1:103,0,160:99 chr3 170858406 . T G 214 . DP=33;VDB=0.0365;AF1=0.5;AC1=1;DP4=1,14,5,13;MQ=59;FQ=170;PV4=0.19,0.006,0.18,1 GT:PL:GQ 0/1:244,0,197:99 chr3 170893070 . G A 222 . DP=47;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,19,26;MQ=60;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr3 170928797 . T C 70 . DP=3;VDB=0.0177;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:102,9,0:16 chr3 171065031 . G C 222 . DP=38;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,2,31;MQ=58;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr3 171087469 . G A 73 . DP=90;VDB=0.0399;AF1=0.5;AC1=1;DP4=8,36,6,33;MQ=60;FQ=76;PV4=0.78,7.7e-33,1,1 GT:PL:GQ 0/1:103,0,255:99 chr3 171323305 . T C 163 . DP=26;VDB=0.0066;AF1=0.5;AC1=1;DP4=1,9,1,14;MQ=60;FQ=146;PV4=1,0.0029,1,0.38 GT:PL:GQ 0/1:193,0,173:99 chr3 171338237 . T G 194 . DP=24;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,8,15;MQ=60;FQ=-96 GT:PL:GQ 1/1:227,69,0:99 chr3 171395468 . A G 222 . DP=57;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,36;MQ=59;FQ=-190 GT:PL:GQ 1/1:255,163,0:99 chr3 171404478 . C A 165 . DP=72;VDB=0.0322;AF1=0.5;AC1=1;DP4=14,24,13,21;MQ=60;FQ=168;PV4=1,7.4e-28,1,1 GT:PL:GQ 0/1:195,0,255:99 chr3 171442635 . C T 222 . DP=161;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,78,77;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 171442750 . AG A 130 . INDEL;DP=34;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,31;MQ=60;FQ=-128 GT:PL:GQ 1/1:171,93,0:99 chr3 171443955 . T A 57.1 . DP=9;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:90,21,0:39 chr3 171510238 . C T 139 . DP=15;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,10,5;MQ=57;FQ=-72 GT:PL:GQ 1/1:172,45,0:87 chr3 171830176 . CTTGTTGT CTTGT 172 . INDEL;DP=12;VDB=0.0345;AF1=0.5;AC1=1;DP4=4,2,5,1;MQ=56;FQ=175;PV4=1,5.8e-11,0.072,1 GT:PL:GQ 0/1:210,0,255:99 chr3 171844787 . A T 217 . DP=74;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,32,42;MQ=60;FQ=-250 GT:PL:GQ 1/1:250,223,0:99 chr3 172034901 . T G 225 . DP=48;VDB=0.0400;AF1=0.5;AC1=1;DP4=12,13,10,11;MQ=60;FQ=225;PV4=1,0.14,0.14,0.082 GT:PL:GQ 0/1:255,0,255:99 chr3 172046861 . T C 225 . DP=67;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,20,13,16;MQ=60;FQ=225;PV4=1,0.31,1,0.28 GT:PL:GQ 0/1:255,0,255:99 chr3 172046933 . A G 122 . DP=45;VDB=0.0365;AF1=0.5;AC1=1;DP4=5,20,5,15;MQ=60;FQ=125;PV4=0.73,2.4e-16,1,1 GT:PL:GQ 0/1:152,0,255:99 chr3 172059121 . G A 95 . DP=13;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,12;MQ=60;FQ=-66 GT:PL:GQ 1/1:128,39,0:75 chr3 172060700 . C T 50 . DP=13;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,13,0;MQ=60;FQ=-66 GT:PL:GQ 1/1:83,39,0:75 chr3 172064091 . G A 222 . DP=27;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,23,4;MQ=60;FQ=-108 GT:PL:GQ 1/1:255,81,0:99 chr3 172099011 . A G 45 . DP=5;VDB=0.0040;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=55;FQ=21;PV4=1,1,0.25,1 GT:PL:GQ 0/1:75,0,48:51 chr3 172162837 . T C 35 . DP=7;VDB=0.0041;AF1=0.5;AC1=1;DP4=3,0,3,1;MQ=60;FQ=37.9;PV4=1,2.9e-05,1,1 GT:PL:GQ 0/1:65,0,83:68 chr3 172224303 . A G 112 . DP=43;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,34,5;MQ=58;FQ=-144 GT:PL:GQ 1/1:145,117,0:99 chr3 172224769 . GC G 184 . INDEL;DP=35;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,3,25;MQ=60;FQ=-119 GT:PL:GQ 1/1:225,84,0:99 chr3 172227199 . C T 94 . DP=12;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,1,11;MQ=60;FQ=-63 GT:PL:GQ 1/1:127,36,0:69 chr3 172365619 . G A 222 . DP=21;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,18,2;MQ=59;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr3 172428842 . G A 146 . DP=42;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,12,9,11;MQ=59;FQ=149;PV4=1,3.7e-10,0.16,0.15 GT:PL:GQ 0/1:176,0,255:99 chr3 172486964 . C A 145 . DP=18;VDB=0.0190;AF1=0.5;AC1=1;DP4=1,3,0,14;MQ=60;FQ=62;PV4=0.22,0.22,1,0.45 GT:PL:GQ 0/1:175,0,89:92 chr3 172520818 . G C 64 . DP=6;VDB=0.0082;AF1=0.5;AC1=1;DP4=0,2,0,4;MQ=56;FQ=26;PV4=1,0.33,0.27,1 GT:PL:GQ 0/1:94,0,53:56 chr3 172634025 . TT TTGT 9.04 . INDEL;DP=14;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-70.5 GT:PL:GQ 1/1:49,36,0:41 chr3 172835125 . T C 140 . DP=80;VDB=0.0399;AF1=0.5;AC1=1;DP4=18,19,14,28;MQ=60;FQ=143;PV4=0.18,4.7e-28,0.18,1 GT:PL:GQ 0/1:170,0,255:99 chr3 173322277 . G A 37 . DP=22;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,0,12,0;MQ=60;FQ=40;PV4=1,2.6e-14,1,0.26 GT:PL:GQ 0/1:67,0,158:70 chr3 173323278 . A G 222 . DP=42;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,25,16;MQ=59;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr3 173413519 . A G 60 . DP=7;VDB=0.0208;AF1=0.5;AC1=1;DP4=1,3,2,1;MQ=60;FQ=63;PV4=0.49,0.44,1,1 GT:PL:GQ 0/1:90,0,119:93 chr3 174581888 . T C 222 . DP=94;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,55,38;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 175087408 . Ctgtgtgtgtgtg Ctgtgtgtgtg 26.5 . INDEL;DP=7;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,2,1,1;MQ=60;FQ=29.5;PV4=1,0.00026,1,1 GT:PL:GQ 0/1:64,0,225:67 chr3 175165079 . C T 202 . DP=93;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,41,41;MQ=60;FQ=-274 GT:PL:GQ 1/1:235,247,0:99 chr3 175165201 . T G 25 . DP=23;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,9,1,11;MQ=60;FQ=28;PV4=1,3.2e-08,1,1 GT:PL:GQ 0/1:55,0,136:58 chr3 175205148 . C T 89 . DP=20;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,20,0;MQ=58;FQ=-87 GT:PL:GQ 1/1:122,60,0:99 chr3 175473047 . T C 152 . DP=22;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,19,3;MQ=60;FQ=-93 GT:PL:GQ 1/1:185,66,0:99 chr3 175520736 . T C 13.2 . DP=19;VDB=0.0066;AF1=0.5;AC1=1;DP4=12,0,7,0;MQ=60;FQ=16.1;PV4=1,9.8e-09,1,1 GT:PL:GQ 0/1:43,0,166:46 chr3 176765253 . G A 34.1 . DP=6;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:67,18,0:33 chr3 176771719 . G C 225 . DP=53;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,13,12,16;MQ=60;FQ=225;PV4=0.79,0.17,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr3 176771833 . Cgtgtgtgtgtgtgtgtgtgtgtgtgtgtg Cgtgtgtgtgtgtgtgtgtgtgtgtg,Cgtgtgtgtgtgtgtgtgtgtgtgtgtg 66.2 . INDEL;DP=7;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:138,39,33,104,0,101:10 chr3 178546026 . T C 157 . DP=63;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,17,14,15;MQ=59;FQ=160;PV4=1,1.2e-16,1,1 GT:PL:GQ 0/1:187,0,255:99 chr3 178560581 . A C 66 . DP=67;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,25,5,26;MQ=59;FQ=69;PV4=0.54,4e-27,1,0.43 GT:PL:GQ 0/1:96,0,255:99 chr3 178785549 . G A 34.1 . DP=8;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,1,5;MQ=60;FQ=-45 GT:PL:GQ 1/1:67,18,0:33 chr3 178922222 . G T 15.1 . DP=8;VDB=0.0011;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=18.1;PV4=1,0.00013,1,1 GT:PL:GQ 0/1:45,0,95:48 chr3 178922274 . C A 64 . DP=18;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,1,6,2;MQ=60;FQ=67;PV4=0.56,1.3e-06,1,0.34 GT:PL:GQ 0/1:94,0,179:97 chr3 178922430 . A G 69 . DP=12;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,7,0,5;MQ=60;FQ=72;PV4=1,0.37,1,1 GT:PL:GQ 0/1:99,0,134:99 chr3 178927345 . T C 32 . DP=38;VDB=0.0081;AF1=0.5;AC1=1;DP4=17,0,18,1;MQ=59;FQ=35;PV4=1,1.5e-26,0.18,1 GT:PL:GQ 0/1:62,0,179:65 chr3 178938747 . A T 4.13 . DP=13;VDB=0.0322;AF1=0.4998;AC1=1;DP4=5,1,4,0;MQ=57;FQ=6.2;PV4=1,5.3e-05,0.036,1 GT:PL:GQ 0/1:32,0,144:31 chr3 178942431 . C G 86 . DP=11;VDB=0.0014;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=60;FQ=79.5;PV4=1,0.24,1,1 GT:PL:GQ 0/1:116,0,107:99 chr3 178957969 . G A 116 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,7,5,9;MQ=60;FQ=119;PV4=0.7,6.8e-10,1,1 GT:PL:GQ 0/1:146,0,246:99 chr3 178959144 . C T 23 . DP=12;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,2,7,0;MQ=57;FQ=26;PV4=0.15,5.1e-07,0.38,0.32 GT:PL:GQ 0/1:53,0,132:56 chr3 178960607 . A G 143 . DP=31;VDB=0.0019;AF1=0.5;AC1=1;DP4=13,1,16,0;MQ=53;FQ=146;PV4=0.47,1,0.11,1 GT:PL:GQ 0/1:173,0,188:99 chr3 178968634 . C T 225 . DP=26;VDB=0.0384;AF1=0.5;AC1=1;DP4=3,5,10,8;MQ=60;FQ=115;PV4=0.67,1,1,1 GT:PL:GQ 0/1:255,0,142:99 chr3 178968660 . T C 82 . DP=21;VDB=0.0365;AF1=0.5;AC1=1;DP4=3,8,6,4;MQ=60;FQ=85;PV4=0.2,5.4e-08,1,0.03 GT:PL:GQ 0/1:112,0,224:99 chr3 178976591 . T A 73 . DP=8;VDB=0.0070;AF1=0.5;AC1=1;DP4=4,0,4,0;MQ=60;FQ=69;PV4=1,1,1,1 GT:PL:GQ 0/1:103,0,97:99 chr3 178976777 . C T 104 . DP=50;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,20,8,13;MQ=59;FQ=107;PV4=0.76,1.6e-11,1,0.2 GT:PL:GQ 0/1:134,0,255:99 chr3 178976821 . G A 67 . DP=29;VDB=0.0081;AF1=0.5;AC1=1;DP4=5,13,2,9;MQ=59;FQ=70;PV4=0.68,1.3e-10,0.1,1 GT:PL:GQ 0/1:97,0,255:99 chr3 178984575 . A G 81 . DP=16;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,7,2,6;MQ=57;FQ=83.7;PV4=0.47,2.7e-05,1,1 GT:PL:GQ 0/1:111,0,122:99 chr3 179051472 . A G 128 . DP=143;VDB=0.0345;AF1=0.5;AC1=1;DP4=32,38,34,34;MQ=60;FQ=131;PV4=0.73,1.8e-68,1,1 GT:PL:GQ 0/1:158,0,255:99 chr3 179092989 . C T 182 . DP=11;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,9,1;MQ=60;FQ=-57 GT:PL:GQ 1/1:215,30,0:57 chr3 179096508 . C G 203 . DP=25;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,17,8;MQ=59;FQ=-102 GT:PL:GQ 1/1:236,75,0:99 chr3 179109735 . A G 117 . DP=12;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,3,8;MQ=60;FQ=-60 GT:PL:GQ 1/1:150,33,0:63 chr3 179137273 . A G 219 . DP=53;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,33;MQ=59;FQ=-178 GT:PL:GQ 1/1:252,151,0:99 chr3 179287509 . C T 83 . DP=10;VDB=0.0025;AF1=0.5;AC1=1;DP4=3,1,6,0;MQ=60;FQ=78.2;PV4=0.4,0.065,1,1 GT:PL:GQ 0/1:113,0,106:99 chr3 179291308 . ctttttttttt cttttttttt 28.5 . INDEL;DP=34;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,2,18;MQ=60;FQ=-94.5 GT:PL:GQ 1/1:69,60,0:85 chr3 179298999 . C T 222 . DP=112;VDB=0.0345;AF1=1;AC1=2;DP4=0,1,22,85;MQ=60;FQ=-282;PV4=1,0.33,0.46,0.25 GT:PL:GQ 1/1:255,255,0:99 chr3 179301051 . G A 66 . DP=3;VDB=0.0218;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:98,9,0:16 chr3 179426712 . G A 225 . DP=64;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,23,4,29;MQ=60;FQ=225;PV4=0.49,0.33,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 179447924 . G A 118 . DP=41;VDB=0.0298;AF1=0.5;AC1=1;DP4=16,8,12,4;MQ=60;FQ=121;PV4=0.73,4.9e-12,1,1 GT:PL:GQ 0/1:148,0,255:99 chr3 179463076 . A G 9.52 . DP=8;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=60;FQ=12.3;PV4=1,0.0031,1,1 GT:PL:GQ 0/1:39,0,63:41 chr3 179463081 . G A 10.4 . DP=7;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,2,0,5;MQ=60;FQ=12.7;PV4=1,2.6e-05,1,0.22 GT:PL:GQ 0/1:40,0,49:42 chr3 179469995 . A G 38 . DP=22;VDB=0.0011;AF1=0.5;AC1=1;DP4=8,1,10,0;MQ=59;FQ=41;PV4=0.47,2.4e-08,1,1 GT:PL:GQ 0/1:68,0,161:71 chr3 179472674 . C T 138 . DP=55;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,17,9,21;MQ=60;FQ=141;PV4=1,1.4e-13,1,1 GT:PL:GQ 0/1:168,0,255:99 chr3 179481971 . Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtg,Ctgtgtgtgtgtgtgtgtgtgtgtgtgtg 62.4 . INDEL;DP=14;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-43.5 GT:PL:GQ 1/1:150,57,48,99,0,96:16 chr3 179592053 . G A 94 . DP=26;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,21,2;MQ=60;FQ=-96 GT:PL:GQ 1/1:127,69,0:99 chr3 179592240 . C T 175 . DP=28;VDB=0.0398;AF1=0.5;AC1=1;DP4=5,12,4,7;MQ=60;FQ=178;PV4=1,0.14,1,0.33 GT:PL:GQ 0/1:205,0,255:99 chr3 179593072 . T A 52 . DP=20;VDB=0.0066;AF1=0.5;AC1=1;DP4=6,0,13,1;MQ=58;FQ=55;PV4=1,1e-10,0.18,0.22 GT:PL:GQ 0/1:82,0,108:85 chr3 179593352 . C T 56 . DP=10;VDB=0.0003;AF1=0.5;AC1=1;DP4=0,5,0,4;MQ=57;FQ=59;PV4=1,0.046,0.15,0.011 GT:PL:GQ 0/1:86,0,121:89 chr3 179605647 . C A 58 . DP=35;VDB=0.0365;AF1=0.5;AC1=1;DP4=0,18,1,15;MQ=60;FQ=61;PV4=0.47,4e-16,1,1 GT:PL:GQ 0/1:88,0,181:91 chr3 179689173 . T C 13.2 . DP=4;VDB=0.0040;AF1=0.5008;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-4.16;PV4=1,0.089,1,1 GT:PL:GQ 0/1:43,0,25:28 chr3 179689264 . T C 225 . DP=61;VDB=0.0322;AF1=0.5;AC1=1;DP4=25,5,25,6;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 179689365 . C T 225 . DP=75;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,29,11,25;MQ=60;FQ=225;PV4=0.8,1,1,0.36 GT:PL:GQ 0/1:255,0,255:99 chr3 179691094 . G A 137 . DP=111;VDB=0.0365;AF1=0.5;AC1=1;DP4=27,31,23,28;MQ=60;FQ=140;PV4=1,2.1e-38,1,1 GT:PL:GQ 0/1:167,0,255:99 chr3 180334623 . C T 170 . DP=43;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,7,15,9;MQ=60;FQ=173;PV4=1,2.9e-10,1,0.4 GT:PL:GQ 0/1:200,0,255:99 chr3 180630565 . T C 191 . DP=87;VDB=0.0380;AF1=0.5;AC1=1;DP4=19,24,18,24;MQ=60;FQ=194;PV4=1,9e-19,0.16,1 GT:PL:GQ 0/1:221,0,255:99 chr3 180633485 . G A 225 . DP=115;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,45,14,34;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 180688997 . C CA 67.5 . INDEL;DP=14;VDB=0.0393;AF1=0.5;AC1=1;DP4=1,8,1,3;MQ=60;FQ=70.5;PV4=1,1,1,1 GT:PL:GQ 0/1:105,0,173:99 chr3 182511484 . C A 21 . DP=5;VDB=0.0124;AF1=0.5;AC1=1;DP4=2,1,1,1;MQ=60;FQ=24;PV4=1,0.21,1,0.48 GT:PL:GQ 0/1:51,0,82:54 chr3 182546017 . C A 222 . DP=20;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,13,4;MQ=59;FQ=-78 GT:PL:GQ 1/1:255,51,0:99 chr3 182575631 . G T 7.59 . DP=2;VDB=0.0151;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:38,6,0:7 chr3 182576923 . T A 42.1 . DP=7;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:75,18,0:33 chr3 182590354 . C T 27.1 . DP=8;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:60,18,0:33 chr3 182591725 . G A 138 . DP=164;VDB=0.0392;AF1=0.5;AC1=1;DP4=39,30,51,40;MQ=60;FQ=141;PV4=1,3.1e-67,0.37,1 GT:PL:GQ 0/1:168,0,255:99 chr3 182598863 . A G 76 . DP=8;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,0,8;MQ=57;FQ=-51 GT:PL:GQ 1/1:109,24,0:45 chr3 182681740 . C T 222 . DP=46;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,29,15;MQ=59;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr3 182681853 . T C 222 . DP=42;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,12,27;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr3 182735182 . C A 180 . DP=64;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,5,59;MQ=60;FQ=-220 GT:PL:GQ 1/1:213,193,0:99 chr3 182755209 . T G 176 . DP=33;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,8,23;MQ=59;FQ=-120 GT:PL:GQ 1/1:209,93,0:99 chr3 182757084 . G A 11.3 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:43,9,0:13 chr3 182790249 . G A 189 . DP=34;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,14,19;MQ=59;FQ=-126 GT:PL:GQ 1/1:222,99,0:99 chr3 182804385 . G A 135 . DP=35;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,30,4;MQ=59;FQ=-129 GT:PL:GQ 1/1:168,102,0:99 chr3 182810144 . T G 147 . DP=31;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,27,3;MQ=60;FQ=-117 GT:PL:GQ 1/1:180,90,0:99 chr3 182812292 . T C 38 . DP=61;VDB=0.0345;AF1=0.5;AC1=1;DP4=18,8,31,2;MQ=60;FQ=41;PV4=0.016,2e-34,0.19,1 GT:PL:GQ 0/1:68,0,255:71 chr3 182817328 . C G 152 . DP=33;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,8,25;MQ=60;FQ=-126 GT:PL:GQ 1/1:185,99,0:99 chr3 182853670 . T C 212 . DP=48;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,10,35;MQ=60;FQ=-162 GT:PL:GQ 1/1:245,135,0:99 chr3 182858287 . C T 222 . DP=95;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,68,24;MQ=58;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 182858461 . A G 52 . DP=21;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,20;MQ=59;FQ=-87 GT:PL:GQ 1/1:85,60,0:99 chr3 182870082 . G A 66.1 . DP=7;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,2,4;MQ=60;FQ=-45 GT:PL:GQ 1/1:99,18,0:33 chr3 182871962 . C T 222 . DP=93;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,55,34;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 182880495 . C A 144 . DP=23;VDB=0.0298;AF1=1;AC1=2;DP4=1,0,8,14;MQ=59;FQ=-67;PV4=0.39,0.0018,1,0.28 GT:PL:GQ 1/1:177,40,0:77 chr3 182880629 . A C 10.2 . DP=2;VDB=0.0194;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:41,6,0:8 chr3 182897963 . G A 51 . DP=10;VDB=0.0099;AF1=0.5;AC1=1;DP4=0,3,1,6;MQ=58;FQ=41.7;PV4=1,6.8e-05,0.27,1 GT:PL:GQ 0/1:81,0,69:72 chr3 182913092 . T G 31 . DP=16;VDB=0.0140;AF1=0.5;AC1=1;DP4=0,6,1,9;MQ=60;FQ=34;PV4=1,2.8e-09,1,1 GT:PL:GQ 0/1:61,0,118:64 chr3 182925404 . T C 213 . DP=41;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,31,10;MQ=60;FQ=-150 GT:PL:GQ 1/1:246,123,0:99 chr3 182946002 . A G 192 . DP=77;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,50,18;MQ=60;FQ=-194;PV4=1,9.8e-10,0.45,0.28 GT:PL:GQ 1/1:225,167,0:99 chr3 182947413 . C G 66 . DP=10;VDB=0.0042;AF1=0.5;AC1=1;DP4=5,0,4,0;MQ=60;FQ=68.9;PV4=1,1,1,1 GT:PL:GQ 0/1:96,0,113:99 chr3 183027542 . T G 225 . DP=82;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,30,7,28;MQ=60;FQ=225;PV4=0.44,1,0.14,0.23 GT:PL:GQ 0/1:255,0,255:99 chr3 183028600 . A T 98 . DP=31;VDB=0.0140;AF1=0.5;AC1=1;DP4=12,2,14,3;MQ=59;FQ=101;PV4=1,5e-15,0.19,0.079 GT:PL:GQ 0/1:128,0,208:99 chr3 183029331 . C T 22 . DP=14;VDB=0.0014;AF1=0.5;AC1=1;DP4=5,1,8,0;MQ=60;FQ=25;PV4=0.43,4e-08,1,1 GT:PL:GQ 0/1:52,0,131:55 chr3 183036166 . G T 5.46 . DP=4;VDB=0.0196;AF1=0.4999;AC1=1;DP4=0,2,0,2;MQ=60;FQ=7.8;PV4=1,0.0022,1,0.12 GT:PL:GQ 0/1:34,0,62:34 chr3 183040924 . T G 75 . DP=26;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,1,10,1;MQ=60;FQ=78;PV4=1,2.7e-06,1,0.4 GT:PL:GQ 0/1:105,0,194:99 chr3 183041201 . C G 68 . DP=5;VDB=0.0008;AF1=0.5025;AC1=1;DP4=0,1,0,4;MQ=60;FQ=-7.78;PV4=1,1,1,1 GT:PL:GQ 0/1:98,0,20:23 chr3 183056541 . A C 225 . DP=113;VDB=0.0365;AF1=0.5;AC1=1;DP4=32,25,36,19;MQ=60;FQ=225;PV4=0.34,0.24,1,0.46 GT:PL:GQ 0/1:255,0,255:99 chr3 183059540 . C CT 33.5 . INDEL;DP=9;VDB=0.0014;AF1=0.5;AC1=1;DP4=1,5,0,3;MQ=60;FQ=36.5;PV4=1,1,1,1 GT:PL:GQ 0/1:71,0,139:74 chr3 183211906 . A G 225 . DP=94;VDB=0.0400;AF1=0.5;AC1=1;DP4=27,22,27,15;MQ=59;FQ=225;PV4=0.4,0.42,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 183368216 . A T 142 . DP=144;VDB=0.0365;AF1=0.5;AC1=1;DP4=40,28,42,29;MQ=59;FQ=145;PV4=1,1.4e-53,0.29,1 GT:PL:GQ 0/1:172,0,255:99 chr3 183368891 . C T 225 . DP=105;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,19,32,31;MQ=60;FQ=225;PV4=1,1,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr3 183432983 . C T 132 . DP=67;VDB=0.0365;AF1=0.5;AC1=1;DP4=25,9,26,6;MQ=60;FQ=135;PV4=0.56,6.9e-17,1,1 GT:PL:GQ 0/1:162,0,255:99 chr3 183439972 . A AG 169 . INDEL;DP=25;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,10,1,12;MQ=60;FQ=164;PV4=0.59,1,1,0.056 GT:PL:GQ 0/1:207,0,199:99 chr3 183476685 . G A 170 . DP=103;VDB=0.0345;AF1=0.5;AC1=1;DP4=26,23,30,23;MQ=60;FQ=173;PV4=0.84,1.9e-31,1,1 GT:PL:GQ 0/1:200,0,255:99 chr3 183491340 . T C 11.3 . DP=6;VDB=0.0005;AF1=0.5;AC1=1;DP4=2,0,4,0;MQ=60;FQ=14.1;PV4=1,3.2e-06,1,0.031 GT:PL:GQ 0/1:41,0,58:43 chr3 183491720 . T C 30.5 . DP=5;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:63,12,0:21 chr3 183493743 . Cggaggaggaggaggaggaggaggaggagg Cggaggaggaggaggaggaggaggagg 217 . INDEL;DP=10;VDB=0.0140;AF1=0.5;AC1=1;DP4=3,0,4,2;MQ=60;FQ=92.5;PV4=0.5,0.43,1,1 GT:PL:GQ 0/1:255,0,127:99 chr3 183493991 . G A 111 . DP=10;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,2,7;MQ=60;FQ=-54 GT:PL:GQ 1/1:144,27,0:51 chr3 183521133 . A G 126 . DP=15;VDB=0.0400;AF1=0.5;AC1=1;DP4=5,2,5,2;MQ=58;FQ=128;PV4=1,0.43,1,0.19 GT:PL:GQ 0/1:156,0,162:99 chr3 183524193 . T C 31 . DP=31;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,5,5,5;MQ=60;FQ=34;PV4=0.23,7.3e-09,1,0.44 GT:PL:GQ 0/1:61,0,255:64 chr3 183524349 . C G 90 . DP=7;VDB=0.0025;AF1=0.5;AC1=1;DP4=0,2,0,5;MQ=60;FQ=25;PV4=1,0.24,1,1 GT:PL:GQ 0/1:120,0,52:55 chr3 183524948 . T C 6.2 . DP=9;VDB=0.0208;AF1=0.4999;AC1=1;DP4=0,6,1,2;MQ=60;FQ=8.65;PV4=0.33,3.3e-05,1,0.25 GT:PL:GQ 0/1:35,0,131:36 chr3 183528442 . C T 51 . DP=22;VDB=0.0033;AF1=0.5;AC1=1;DP4=2,9,0,10;MQ=59;FQ=54;PV4=0.48,3.9e-09,1,0.29 GT:PL:GQ 0/1:81,0,207:84 chr3 183535763 . A G 222 . DP=40;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,34,1;MQ=60;FQ=-132 GT:PL:GQ 1/1:255,105,0:99 chr3 183551733 . A C 67 . DP=10;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:100,27,0:51 chr3 183580351 . C T 37 . DP=5;VDB=0.0080;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=60;FQ=32.2;PV4=1,0.18,1,0.31 GT:PL:GQ 0/1:67,0,60:62 chr3 183585883 . A G 105 . DP=36;VDB=0.0298;AF1=0.5;AC1=1;DP4=1,19,3,12;MQ=60;FQ=108;PV4=0.29,4.6e-15,1,1 GT:PL:GQ 0/1:135,0,217:99 chr3 183604723 . A G 222 . DP=22;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,12,10;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr3 183663833 . T C 222 . DP=32;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,3,29;MQ=59;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr3 183679532 . A G 106 . DP=13;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,1,12;MQ=60;FQ=-66 GT:PL:GQ 1/1:139,39,0:75 chr3 183681056 . T G 60.1 . DP=7;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:93,18,0:33 chr3 183682960 . G A 110 . DP=26;VDB=0.0400;AF1=1;AC1=2;DP4=1,0,21,2;MQ=60;FQ=-68;PV4=1,0.018,1,1 GT:PL:GQ 1/1:143,41,0:79 chr3 183685534 . A G 222 . DP=128;VDB=0.0392;AF1=1;AC1=2;DP4=0,2,58,58;MQ=60;FQ=-282;PV4=0.5,1,1,1 GT:PL:GQ 1/1:255,255,0:99 chr3 183696402 . A G 201 . DP=49;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,37,6;MQ=59;FQ=-156 GT:PL:GQ 1/1:234,129,0:99 chr3 183699516 . T C 108 . DP=26;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,23,2;MQ=59;FQ=-102 GT:PL:GQ 1/1:141,75,0:99 chr3 183700211 . C T 132 . DP=15;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,2;MQ=60;FQ=-69 GT:PL:GQ 1/1:165,42,0:81 chr3 183706630 . A C 77.5 . DP=4;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:110,12,0:21 chr3 183754294 . G C 221 . DP=37;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,17,16;MQ=59;FQ=-126 GT:PL:GQ 1/1:254,99,0:99 chr3 183754585 . C T 166 . DP=48;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,36,11;MQ=58;FQ=-168 GT:PL:GQ 1/1:199,141,0:99 chr3 183755822 . G A 222 . DP=26;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,19,6;MQ=60;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr3 183756391 . C G 222 . DP=20;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,7;MQ=55;FQ=-84 GT:PL:GQ 1/1:255,57,0:99 chr3 183756441 . C T 165 . DP=23;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,12,9;MQ=57;FQ=-90 GT:PL:GQ 1/1:198,63,0:99 chr3 183756637 . C T 205 . DP=50;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,38,11;MQ=56;FQ=-175 GT:PL:GQ 1/1:238,148,0:99 chr3 183756780 . A C 162 . DP=105;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,42,57;MQ=47;FQ=-282 GT:PL:GQ 1/1:195,255,0:99 chr3 183756808 . G A 190 . DP=74;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,15,52;MQ=42;FQ=-229 GT:PL:GQ 1/1:223,202,0:99 chr3 183756836 . A AT 214 . INDEL;DP=47;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,19;MQ=36;FQ=-107 GT:PL:GQ 1/1:255,72,0:99 chr3 183774762 . C A 101 . DP=80;VDB=0.0392;AF1=0.5;AC1=1;DP4=27,15,15,20;MQ=60;FQ=104;PV4=0.07,1.9e-34,1,0.47 GT:PL:GQ 0/1:131,0,255:99 chr3 183774872 . GAA GAAA 214 . INDEL;DP=36;VDB=0.0216;AF1=1;AC1=2;DP4=0,1,7,28;MQ=59;FQ=-114;PV4=1,1,1,1 GT:PL:GQ 1/1:255,79,0:99 chr3 183776469 . C T 61.1 . DP=6;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,1,5;MQ=56;FQ=-45 GT:PL:GQ 1/1:94,18,0:33 chr3 183777919 . G A 208 . DP=44;VDB=0.0380;AF1=1;AC1=2;DP4=1,0,30,12;MQ=59;FQ=-127;PV4=1,5.2e-05,1,0.43 GT:PL:GQ 1/1:241,100,0:99 chr3 183778010 . G C 222 . DP=96;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,65,26;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 183815439 . A G 89 . DP=19;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,18;MQ=60;FQ=-81 GT:PL:GQ 1/1:122,54,0:99 chr3 183818221 . AGGG AGG 195 . INDEL;DP=27;VDB=0.0244;AF1=0.5;AC1=1;DP4=4,4,11,6;MQ=58;FQ=107;PV4=0.67,2.2e-06,0.17,0.38 GT:PL:GQ 0/1:233,0,142:99 chr3 183818416 . G A 222 . DP=61;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,23,36;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr3 183823576 . T C 163 . DP=37;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,33,4;MQ=60;FQ=-138 GT:PL:GQ 1/1:196,111,0:99 chr3 183861243 . A G 225 . DP=75;VDB=0.0392;AF1=0.5;AC1=1;DP4=30,18,15,11;MQ=59;FQ=225;PV4=0.8,0.12,0.12,1 GT:PL:GQ 0/1:255,0,255:99 chr3 183882129 . T A 185 . DP=88;VDB=0.0400;AF1=0.5;AC1=1;DP4=15,16,21,33;MQ=60;FQ=188;PV4=0.49,2.4e-15,1,0.4 GT:PL:GQ 0/1:215,0,255:99 chr3 183884895 . C T 19.1 . DP=20;VDB=0.0011;AF1=0.5;AC1=1;DP4=2,10,0,7;MQ=60;FQ=22;PV4=0.51,1.6e-05,1,1 GT:PL:GQ 0/1:49,0,204:52 chr3 183896641 . T C 48 . DP=13;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,0;MQ=60;FQ=-63 GT:PL:GQ 1/1:81,36,0:69 chr3 183900680 . G C 225 . DP=57;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,18,9,15;MQ=60;FQ=225;PV4=0.79,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 183900729 . T C 138 . DP=52;VDB=0.0400;AF1=0.5;AC1=1;DP4=13,16,12,10;MQ=59;FQ=141;PV4=0.58,2.2e-13,0.42,0.4 GT:PL:GQ 0/1:168,0,255:99 chr3 183900836 . G A 32 . DP=20;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,9,0,9;MQ=60;FQ=35;PV4=0.48,1.2e-12,1,0.3 GT:PL:GQ 0/1:62,0,220:65 chr3 183904049 . A G 153 . DP=57;VDB=0.0380;AF1=0.5;AC1=1;DP4=14,6,18,15;MQ=60;FQ=156;PV4=0.39,1.4e-18,1,1 GT:PL:GQ 0/1:183,0,245:99 chr3 183904232 . T A 34.8 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:66,6,0:10 chr3 183905103 . G C 74 . DP=7;VDB=0.0180;AF1=0.5;AC1=1;DP4=3,0,3,1;MQ=60;FQ=51;PV4=1,0.089,1,0.36 GT:PL:GQ 0/1:104,0,78:81 chr3 183906515 . T C 45 . DP=35;VDB=0.0244;AF1=0.5;AC1=1;DP4=15,2,15,1;MQ=60;FQ=48;PV4=1,2.7e-17,1,1 GT:PL:GQ 0/1:75,0,232:78 chr3 183907032 . G C 225 . DP=52;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,15,16,7;MQ=60;FQ=225;PV4=0.16,0.38,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 183975365 . C T 222 . DP=57;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,17,36;MQ=60;FQ=-187 GT:PL:GQ 1/1:255,160,0:99 chr3 183994536 . A G 169 . DP=30;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,13,17;MQ=58;FQ=-117 GT:PL:GQ 1/1:202,90,0:99 chr3 183995341 . C T 9.31 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr3 183995854 . G A 193 . DP=35;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,6;MQ=60;FQ=-129 GT:PL:GQ 1/1:226,102,0:99 chr3 183996068 . C T 222 . DP=48;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,13,34;MQ=60;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr3 183996213 . C T 3.41 . DP=2;VDB=0.0100;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:32,6,0:4 chr3 183996484 . ctttcttcttttcttc ctttcttc 79 . INDEL;DP=5;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,4;MQ=39;FQ=-46.5 GT:PL:GQ 1/1:119,12,0:21 chr3 184010048 . G C 131 . DP=43;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,35;MQ=59;FQ=-153 GT:PL:GQ 1/1:164,126,0:99 chr3 184017535 . C T 41 . DP=19;VDB=0.0398;AF1=0.5;AC1=1;DP4=9,1,9,0;MQ=60;FQ=44;PV4=1,9.7e-08,1,1 GT:PL:GQ 0/1:71,0,176:74 chr3 184020542 . G T 146 . DP=40;VDB=0.0244;AF1=0.5;AC1=1;DP4=12,5,17,6;MQ=60;FQ=149;PV4=1,6.8e-13,1,1 GT:PL:GQ 0/1:176,0,244:99 chr3 184033408 . A T 210 . DP=49;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,10,16,5;MQ=60;FQ=213;PV4=0.37,0.0039,0.13,1 GT:PL:GQ 0/1:240,0,255:99 chr3 184037533 . A G 222 . DP=50;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,28,14;MQ=60;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr3 184038969 . C T 50 . DP=18;VDB=0.0006;AF1=0.5;AC1=1;DP4=11,0,5,0;MQ=60;FQ=53;PV4=1,0.029,1,1 GT:PL:GQ 0/1:80,0,164:83 chr3 184039666 . A G 222 . DP=43;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,10,32;MQ=59;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr3 184043282 . A G 225 . DP=96;VDB=0.0399;AF1=0.5;AC1=1;DP4=22,28,11,29;MQ=59;FQ=225;PV4=0.13,1,0.44,1 GT:PL:GQ 0/1:255,0,255:99 chr3 184045799 . A G 142 . DP=30;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,2,28;MQ=59;FQ=-117 GT:PL:GQ 1/1:175,90,0:99 chr3 184046355 . C T 222 . DP=47;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,36,11;MQ=59;FQ=-168 GT:PL:GQ 1/1:255,141,0:99 chr3 184046470 . C T 225 . DP=58;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,18,12,16;MQ=60;FQ=225;PV4=0.78,0.02,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 184056101 . G C 77 . DP=34;VDB=0.0140;AF1=0.5;AC1=1;DP4=9,1,21,2;MQ=60;FQ=80;PV4=1,9.3e-11,1,1 GT:PL:GQ 0/1:107,0,142:99 chr3 184062776 . A G 222 . DP=41;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,17,23;MQ=59;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr3 184070675 . A G 153 . DP=24;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,6,16;MQ=59;FQ=-93 GT:PL:GQ 1/1:186,66,0:99 chr3 184071017 . G A 222 . DP=74;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,33,31;MQ=60;FQ=-220 GT:PL:GQ 1/1:255,193,0:99 chr3 184071019 . T C 166 . DP=72;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,33,31;MQ=60;FQ=-220 GT:PL:GQ 1/1:199,193,0:99 chr3 184071063 . G C 195 . DP=61;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,18,41;MQ=60;FQ=-205 GT:PL:GQ 1/1:228,178,0:99 chr3 184072459 . G A 181 . DP=49;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,11,29;MQ=59;FQ=-147 GT:PL:GQ 1/1:214,120,0:99 chr3 184075958 . C T 174 . DP=54;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,25,25;MQ=60;FQ=-178 GT:PL:GQ 1/1:207,151,0:99 chr3 184090266 . C T 222 . DP=23;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,15,7;MQ=60;FQ=-93 GT:PL:GQ 1/1:255,66,0:99 chr3 184091149 . G T 132 . DP=22;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,18,4;MQ=60;FQ=-93 GT:PL:GQ 1/1:165,66,0:99 chr3 184098647 . C T 21 . DP=16;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,10,0,5;MQ=60;FQ=24;PV4=1,5.3e-09,1,1 GT:PL:GQ 0/1:51,0,167:54 chr3 184099206 . C T 136 . DP=53;VDB=0.0380;AF1=0.5;AC1=1;DP4=12,15,11,15;MQ=59;FQ=139;PV4=1,1.4e-21,1,0.37 GT:PL:GQ 0/1:166,0,255:99 chr3 184099378 . C A 225 . DP=33;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,4,12,6;MQ=59;FQ=186;PV4=1,1,0.19,1 GT:PL:GQ 0/1:255,0,213:99 chr3 184100338 . G A 162 . DP=78;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,10,22,24;MQ=60;FQ=165;PV4=0.23,4.7e-25,1,1 GT:PL:GQ 0/1:192,0,255:99 chr3 184102396 . C T 225 . DP=43;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,1,20,11;MQ=59;FQ=119;PV4=0.13,0.07,0.27,1 GT:PL:GQ 0/1:255,0,146:99 chr3 184102579 . A C 32 . DP=14;VDB=0.0298;AF1=0.5;AC1=1;DP4=0,9,1,4;MQ=60;FQ=35;PV4=0.36,6.7e-05,1,1 GT:PL:GQ 0/1:62,0,143:65 chr3 184103722 . A G 154 . DP=14;VDB=0.0066;AF1=0.5;AC1=1;DP4=3,1,9,1;MQ=58;FQ=69;PV4=0.51,0.3,0.27,1 GT:PL:GQ 0/1:184,0,96:99 chr3 184103903 . A C 225 . DP=51;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,12,10,15;MQ=60;FQ=225;PV4=0.57,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 184144585 . A G 225 . DP=88;VDB=0.0365;AF1=0.5;AC1=1;DP4=25,26,17,17;MQ=59;FQ=225;PV4=1,1,1,0.37 GT:PL:GQ 0/1:255,0,255:99 chr3 184290348 . G A 225 . DP=56;VDB=0.0399;AF1=0.5;AC1=1;DP4=21,2,19,10;MQ=60;FQ=181;PV4=0.046,1,1,1 GT:PL:GQ 0/1:255,0,208:99 chr3 184293769 . T C 225 . DP=40;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,9,9,11;MQ=60;FQ=225;PV4=0.75,0.38,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 184295008 . C A 31 . DP=17;VDB=0.0099;AF1=0.5;AC1=1;DP4=2,9,0,6;MQ=60;FQ=34;PV4=0.51,0.00031,1,0.47 GT:PL:GQ 0/1:61,0,202:64 chr3 184295316 . C T 84 . DP=61;VDB=0.0359;AF1=0.5;AC1=1;DP4=11,20,5,19;MQ=60;FQ=87;PV4=0.37,1.4e-21,1,0.35 GT:PL:GQ 0/1:114,0,255:99 chr3 184295828 . C A 151 . DP=37;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,9,6,15;MQ=60;FQ=154;PV4=0.49,4.2e-09,1,0.096 GT:PL:GQ 0/1:181,0,255:99 chr3 184298663 . G A 81 . DP=71;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,29,13,11;MQ=59;FQ=84;PV4=0.21,4.3e-25,0.32,1 GT:PL:GQ 0/1:111,0,255:99 chr3 184299167 . T C 72 . DP=65;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,16,9,22;MQ=60;FQ=75;PV4=0.19,1.8e-31,1,1 GT:PL:GQ 0/1:102,0,255:99 chr3 184428903 . T G 222 . DP=41;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,21,18;MQ=59;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr3 184429133 . Atcctcctcctcctcctcctcc ATCCtcctcctcctcctcctcctcc 214 . INDEL;DP=44;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,15;MQ=60;FQ=-137 GT:PL:GQ 1/1:255,102,0:99 chr3 184429414 . C A 222 . DP=82;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,20,60;MQ=60;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr3 184616504 . C T 15.1 . DP=5;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:47,9,0:14 chr3 184631103 . G A 20 . DP=3;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:52,9,0:15 chr3 184633247 . A C 141 . DP=18;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,5,11;MQ=60;FQ=-75 GT:PL:GQ 1/1:174,48,0:93 chr3 184647413 . T C 222 . DP=37;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,7,30;MQ=59;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr3 184654166 . A G 138 . DP=33;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,27;MQ=59;FQ=-120 GT:PL:GQ 1/1:171,93,0:99 chr3 184675095 . C T 11.3 . DP=7;VDB=0.0008;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=45;FQ=14.2;PV4=1,0.00071,0,1 GT:PL:GQ 0/1:41,0,75:43 chr3 184675147 . CTTTTAT CT 210 . INDEL;DP=43;VDB=0.0164;AF1=0.5;AC1=1;DP4=19,1,20,0;MQ=52;FQ=213;PV4=1,4.5e-14,3.4e-07,1 GT:PL:GQ 0/1:248,0,255:99 chr3 184675359 . T C 74 . DP=52;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,49;MQ=59;FQ=-178 GT:PL:GQ 1/1:107,151,0:99 chr3 184684313 . G A 17.8 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:49,6,0:10 chr3 184700356 . A C 195 . DP=70;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,50,20;MQ=59;FQ=-238 GT:PL:GQ 1/1:228,211,0:99 chr3 184700426 . C T 225 . DP=90;VDB=0.0399;AF1=0.5;AC1=1;DP4=24,29,13,22;MQ=59;FQ=225;PV4=0.51,0.42,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 184714014 . C T 77 . DP=8;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,8,0;MQ=60;FQ=-51 GT:PL:GQ 1/1:110,24,0:45 chr3 184717703 . T C 17.1 . DP=4;VDB=0.0126;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:49,9,0:15 chr3 184766148 . A G 225 . DP=51;VDB=0.0322;AF1=0.5;AC1=1;DP4=22,4,15,9;MQ=60;FQ=225;PV4=0.11,0.28,0.15,0.15 GT:PL:GQ 0/1:255,0,255:99 chr3 184766186 . A C 225 . DP=75;VDB=0.0190;AF1=0.5;AC1=1;DP4=28,13,21,11;MQ=60;FQ=225;PV4=1,1,0.13,1 GT:PL:GQ 0/1:255,0,255:99 chr3 184766203 . A G 146 . DP=76;VDB=0.0322;AF1=0.5;AC1=1;DP4=26,15,20,12;MQ=60;FQ=149;PV4=1,3.9e-27,1,1 GT:PL:GQ 0/1:176,0,255:99 chr3 184766392 . G A 60 . DP=29;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,13,0,13;MQ=60;FQ=63;PV4=0.48,1.2e-10,1,0.38 GT:PL:GQ 0/1:90,0,219:93 chr3 184935807 . A C 113 . DP=13;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,11,1;MQ=51;FQ=-63 GT:PL:GQ 1/1:146,36,0:69 chr3 185046909 . ATTTTTTTTT ATTTTTTTT 5.07 . INDEL;DP=32;VDB=0.0345;AF1=1;AC1=2;DP4=1,0,25,2;MQ=59;FQ=-104;PV4=1,0.025,0.43,0.22 GT:PL:GQ 1/1:44,69,0:51 chr3 185046975 . T C 222 . DP=75;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,50,24;MQ=59;FQ=-250 GT:PL:GQ 1/1:255,223,0:99 chr3 185212593 . T C 176 . DP=40;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,11,29;MQ=60;FQ=-147 GT:PL:GQ 1/1:209,120,0:99 chr3 185229464 . T C 66 . DP=58;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,24,4,17;MQ=60;FQ=69;PV4=0.54,1.6e-28,1,1 GT:PL:GQ 0/1:96,0,255:99 chr3 185232169 . G A 225 . DP=46;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,5,24,7;MQ=60;FQ=213;PV4=0.49,0.14,1,1 GT:PL:GQ 0/1:255,0,240:99 chr3 185270397 . G A 16.1 . DP=10;VDB=0.0110;AF1=0.5;AC1=1;DP4=0,6,1,3;MQ=60;FQ=19.1;PV4=0.4,9.6e-05,1,1 GT:PL:GQ 0/1:46,0,131:49 chr3 185300589 . T C 174 . DP=103;VDB=0.0298;AF1=0.5;AC1=1;DP4=19,33,21,29;MQ=60;FQ=177;PV4=0.69,1.4e-24,0.49,1 GT:PL:GQ 0/1:204,0,255:99 chr3 185304018 . T C 225 . DP=57;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,9,20,7;MQ=60;FQ=221;PV4=0.37,1,1,0.5 GT:PL:GQ 0/1:255,0,249:99 chr3 185316123 . G A 16.1 . DP=9;VDB=0.0011;AF1=0.5;AC1=1;DP4=5,0,4,0;MQ=60;FQ=19.1;PV4=1,7.8e-07,1,1 GT:PL:GQ 0/1:46,0,117:49 chr3 185330304 . TTGATG TTG 217 . INDEL;DP=34;VDB=0.0393;AF1=0.5;AC1=1;DP4=13,5,12,2;MQ=59;FQ=217;PV4=0.43,0.056,0.052,1 GT:PL:GQ 0/1:255,0,255:99 chr3 185331165 . C A 145 . DP=33;VDB=0.0298;AF1=0.5;AC1=1;DP4=5,6,7,14;MQ=60;FQ=148;PV4=0.7,6.4e-12,1,1 GT:PL:GQ 0/1:175,0,209:99 chr3 185335156 . T A 42 . DP=7;VDB=0.0050;AF1=0.5;AC1=1;DP4=4,0,3,0;MQ=60;FQ=45;PV4=1,0.34,1,1 GT:PL:GQ 0/1:72,0,96:75 chr3 185335162 . GT G 31.5 . INDEL;DP=9;VDB=0.0001;AF1=0.5;AC1=1;DP4=6,0,3,0;MQ=60;FQ=34.5;PV4=1,6.8e-05,1,1 GT:PL:GQ 0/1:69,0,136:72 chr3 185341970 . G A 222 . DP=55;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,21,4,24;MQ=60;FQ=223;PV4=0.5,0.049,1,1 GT:PL:GQ 0/1:252,0,255:99 chr3 185347459 . A G 168 . DP=37;VDB=0.0244;AF1=0.5;AC1=1;DP4=17,2,15,1;MQ=59;FQ=171;PV4=1,0.056,0.49,1 GT:PL:GQ 0/1:198,0,234:99 chr3 185635685 . A G 145 . DP=15;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,3,10;MQ=60;FQ=-66 GT:PL:GQ 1/1:178,39,0:75 chr3 185655454 . A G 19.6 . DP=4;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:52,12,0:21 chr3 185879296 . T C 222 . DP=47;VDB=0.0322;AF1=1;AC1=2;DP4=1,0,34,9;MQ=59;FQ=-141;PV4=1,1,0.44,0.22 GT:PL:GQ 1/1:255,114,0:99 chr3 185882643 . C G 78 . DP=28;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,2,13,1;MQ=60;FQ=81;PV4=0.58,3.9e-09,1,1 GT:PL:GQ 0/1:108,0,202:99 chr3 185905876 . G A 65 . DP=7;VDB=0.0011;AF1=0.5;AC1=1;DP4=3,0,4,0;MQ=60;FQ=55.7;PV4=1,0.13,1,0.21 GT:PL:GQ 0/1:95,0,83:86 chr3 185960192 . A G 15.9 . DP=2;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:47,6,0:10 chr3 185960414 . G A 222 . DP=96;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,45,46;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 185982955 . G A 133 . DP=11;VDB=0.0081;AF1=0.5;AC1=1;DP4=3,1,6,1;MQ=60;FQ=76;PV4=1,0.46,1,1 GT:PL:GQ 0/1:163,0,103:99 chr3 185982972 . T C 75 . DP=18;VDB=0.0271;AF1=0.5;AC1=1;DP4=6,2,9,1;MQ=60;FQ=78;PV4=0.56,2.2e-07,1,1 GT:PL:GQ 0/1:105,0,169:99 chr3 185990096 . C T 107 . DP=79;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,25,16,20;MQ=59;FQ=110;PV4=0.82,1.5e-29,1,0.21 GT:PL:GQ 0/1:137,0,255:99 chr3 186006566 . T C 222 . DP=46;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,16;MQ=59;FQ=-153 GT:PL:GQ 1/1:255,126,0:99 chr3 186006618 . G C 48 . DP=41;VDB=0.0343;AF1=0.5;AC1=1;DP4=9,14,5,8;MQ=60;FQ=51;PV4=1,2.8e-09,1,0.21 GT:PL:GQ 0/1:78,0,255:81 chr3 186015283 . A G 50 . DP=36;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,14,7,7;MQ=60;FQ=53;PV4=0.5,1.3e-14,1,0.075 GT:PL:GQ 0/1:80,0,255:83 chr3 186015303 . A G 49 . DP=30;VDB=0.0398;AF1=0.5;AC1=1;DP4=8,12,4,4;MQ=60;FQ=52;PV4=0.69,0.00023,1,1 GT:PL:GQ 0/1:79,0,255:82 chr3 186015315 . T C 58 . DP=27;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,11,3,6;MQ=60;FQ=61;PV4=1,8.4e-08,1,1 GT:PL:GQ 0/1:88,0,255:91 chr3 186262064 . G A 119 . DP=76;VDB=0.0322;AF1=0.5;AC1=1;DP4=32,5,29,10;MQ=60;FQ=122;PV4=0.25,4.7e-32,1,1 GT:PL:GQ 0/1:149,0,255:99 chr3 186287777 . T C 85.5 . DP=5;VDB=0.0305;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:118,12,0:21 chr3 186287980 . T C 107 . DP=29;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,13,6,6;MQ=60;FQ=110;PV4=0.24,2e-09,1,0.17 GT:PL:GQ 0/1:137,0,255:99 chr3 186288565 . A G 25.5 . DP=4;VDB=0.0022;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:58,12,0:21 chr3 186290127 . Catttatttatttatttatttattt Catttatttatttatttattt 54.5 . INDEL;DP=8;VDB=0.0271;AF1=0.5;AC1=1;DP4=0,1,0,3;MQ=47;FQ=13.7;PV4=1,0.1,0.21,1 GT:PL:GQ 0/1:92,0,48:51 chr3 186293588 . A G 225 . DP=62;VDB=0.0271;AF1=0.5;AC1=1;DP4=22,3,25,10;MQ=60;FQ=219;PV4=0.2,0.082,1,0.24 GT:PL:GQ 0/1:255,0,246:99 chr3 186293819 . T C 38 . DP=35;VDB=0.0118;AF1=0.5016;AC1=1;DP4=0,11,1,22;MQ=60;FQ=-6.18;PV4=1,1,1,1 GT:PL:GQ 0/1:68,0,22:25 chr3 186299905 . T C 86 . DP=36;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,12,5,13;MQ=60;FQ=89;PV4=1,5.2e-14,1,1 GT:PL:GQ 0/1:116,0,255:99 chr3 186301703 . A G 161 . DP=92;VDB=0.0365;AF1=0.5;AC1=1;DP4=28,14,34,15;MQ=59;FQ=164;PV4=0.82,5.8e-42,0.2,1 GT:PL:GQ 0/1:191,0,255:99 chr3 186301840 . T G 119 . DP=70;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,20,8,24;MQ=58;FQ=122;PV4=0.13,1.2e-28,0.065,1 GT:PL:GQ 0/1:149,0,255:99 chr3 186336176 . A G 124 . DP=7;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,7,0;MQ=57;FQ=-48 GT:PL:GQ 1/1:157,21,0:39 chr3 186337713 . T C 222 . DP=59;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,28,28;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr3 186337827 . T C 169 . DP=39;VDB=0.0322;AF1=1;AC1=2;DP4=0,1,13,25;MQ=59;FQ=-115;PV4=1,1.8e-06,1,0.25 GT:PL:GQ 1/1:202,88,0:99 chr3 186338382 . G C 169 . DP=31;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,27,4;MQ=60;FQ=-120 GT:PL:GQ 1/1:202,93,0:99 chr3 186338425 . A C 161 . DP=65;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,47,15;MQ=60;FQ=-214 GT:PL:GQ 1/1:194,187,0:99 chr3 186360409 . T G 72 . DP=33;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,16,2,12;MQ=59;FQ=75;PV4=1,2.3e-12,0.41,0.16 GT:PL:GQ 0/1:102,0,252:99 chr3 186370333 . G T 53 . DP=23;VDB=0.0359;AF1=0.5;AC1=1;DP4=5,8,2,8;MQ=60;FQ=56;PV4=0.41,9.2e-14,1,0.15 GT:PL:GQ 0/1:83,0,239:86 chr3 186389559 . T C 105 . DP=31;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,10,4,8;MQ=59;FQ=108;PV4=1,2.3e-10,0.13,1 GT:PL:GQ 0/1:135,0,255:99 chr3 186390627 . C T 123 . DP=58;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,18,11,17;MQ=60;FQ=126;PV4=1,3.7e-20,0.16,1 GT:PL:GQ 0/1:153,0,255:99 chr3 186393073 . ggtgtgtgtgtgtgtgtgtgtgtgtg ggtgtgtgtgtgtgtg 3.8 . INDEL;DP=13;VDB=0.0190;AF1=0.5;AC1=1;DP4=0,3,0,2;MQ=50;FQ=5.8;PV4=1,1,0,1 GT:PL:GQ 0/1:39,0,137:38 chr3 186395113 . A G 225 . DP=103;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,25,21,28;MQ=60;FQ=225;PV4=0.33,1,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr3 186395180 . T C 222 . DP=105;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,49,48;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 186395572 . A T 113 . DP=90;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,26,23,20;MQ=60;FQ=116;PV4=0.39,2.7e-44,1,0.15 GT:PL:GQ 0/1:143,0,255:99 chr3 186435370 . G A 222 . DP=110;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,51,50;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 186438037 . T C 109 . DP=39;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,2,35;MQ=60;FQ=-138 GT:PL:GQ 1/1:142,111,0:99 chr3 186445052 . T G 170 . DP=66;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,10,25,10;MQ=59;FQ=173;PV4=0.79,5.6e-19,1,1 GT:PL:GQ 0/1:200,0,255:99 chr3 186445186 . G GA 214 . INDEL;DP=48;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,42;MQ=59;FQ=-179 GT:PL:GQ 1/1:255,144,0:99 chr3 186445237 . A C 56 . DP=22;VDB=0.0066;AF1=1;AC1=2;DP4=0,1,0,21;MQ=60;FQ=-52;PV4=1,5.2e-09,1,0.14 GT:PL:GQ 1/1:89,25,0:47 chr3 186449582 . G C 59 . DP=9;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:92,27,0:51 chr3 186501502 . C A 146 . DP=31;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,8,7,9;MQ=60;FQ=149;PV4=1,4.6e-12,1,1 GT:PL:GQ 0/1:176,0,255:99 chr3 186505706 . A C 62 . DP=50;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,19,6,17;MQ=60;FQ=65;PV4=0.74,3.7e-24,1,1 GT:PL:GQ 0/1:92,0,255:95 chr3 186507757 . G A 225 . DP=93;VDB=0.0400;AF1=0.5;AC1=1;DP4=33,13,33,13;MQ=60;FQ=225;PV4=1,0.38,1,0.23 GT:PL:GQ 0/1:255,0,255:99 chr3 186509517 . G A 135 . DP=132;VDB=0.0345;AF1=0.5;AC1=1;DP4=49,31,31,20;MQ=60;FQ=138;PV4=1,1.2e-30,1,1 GT:PL:GQ 0/1:165,0,255:99 chr3 186571123 . G T 71 . DP=15;VDB=0.0081;AF1=0.5;AC1=1;DP4=2,5,1,7;MQ=60;FQ=74;PV4=0.57,0.00031,1,1 GT:PL:GQ 0/1:101,0,160:99 chr3 186791795 . A G 37.5 . DP=4;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:70,12,0:21 chr3 186947410 . C T 42.5 . DP=4;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:75,12,0:21 chr3 186954285 . A G 216 . DP=109;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,49,59;MQ=60;FQ=-282 GT:PL:GQ 1/1:249,255,0:99 chr3 186954324 . G A 193 . DP=82;VDB=0.0399;AF1=0.5;AC1=1;DP4=13,17,16,31;MQ=59;FQ=196;PV4=0.47,2.4e-14,1,0.48 GT:PL:GQ 0/1:223,0,255:99 chr3 186961478 . A G 127 . DP=8;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:160,21,0:39 chr3 186969371 . CG CGG 198 . INDEL;DP=10;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,8,2;MQ=60;FQ=-64.5 GT:PL:GQ 1/1:239,30,0:57 chr3 186969634 . A G 89 . DP=9;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:122,24,0:45 chr3 187003495 . A G 68.5 . DP=4;VDB=0.0005;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:101,12,0:21 chr3 187088612 . C T 159 . DP=57;VDB=0.0384;AF1=0.5;AC1=1;DP4=12,18,16,11;MQ=60;FQ=162;PV4=0.19,3.7e-25,1,0.004 GT:PL:GQ 0/1:189,0,255:99 chr3 187088812 . C T 225 . DP=63;VDB=0.0400;AF1=0.5;AC1=1;DP4=19,13,16,13;MQ=60;FQ=225;PV4=0.8,0.24,1,0.3 GT:PL:GQ 0/1:255,0,255:99 chr3 187088903 . C A 225 . DP=68;VDB=0.0398;AF1=0.5;AC1=1;DP4=21,15,14,17;MQ=59;FQ=225;PV4=0.33,0.32,1,0.11 GT:PL:GQ 0/1:255,0,255:99 chr3 187088926 . G A 225 . DP=64;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,16,11,15;MQ=59;FQ=225;PV4=0.31,0.21,0.36,1 GT:PL:GQ 0/1:255,0,255:99 chr3 187089031 . C A 225 . DP=69;VDB=0.0393;AF1=0.5;AC1=1;DP4=20,19,13,16;MQ=60;FQ=225;PV4=0.63,0.3,1,0.18 GT:PL:GQ 0/1:255,0,255:99 chr3 187416253 . C T 47 . DP=16;VDB=0.0190;AF1=0.5;AC1=1;DP4=8,1,5,2;MQ=60;FQ=50;PV4=0.55,1.4e-07,1,0.43 GT:PL:GQ 0/1:77,0,180:80 chr3 187416634 . C A 89 . DP=29;VDB=0.0025;AF1=0.5;AC1=1;DP4=6,9,5,9;MQ=52;FQ=92;PV4=1,1.5e-13,0.41,1 GT:PL:GQ 0/1:119,0,255:99 chr3 187416666 . C T 100 . DP=23;VDB=0.0271;AF1=0.5;AC1=1;DP4=4,2,12,2;MQ=37;FQ=55;PV4=0.55,0.0068,1,1 GT:PL:GQ 0/1:130,0,82:85 chr3 187416719 . T C 110 . DP=50;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,10,9,6;MQ=50;FQ=113;PV4=0.75,0.002,1,0.0018 GT:PL:GQ 0/1:140,0,255:99 chr3 187419816 . T C 165 . DP=46;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,15,13,10;MQ=57;FQ=168;PV4=0.14,6.2e-10,1,1 GT:PL:GQ 0/1:195,0,255:99 chr3 187420445 . C T 111 . DP=21;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,20;MQ=60;FQ=-90 GT:PL:GQ 1/1:144,63,0:99 chr3 187440506 . C A 84 . DP=24;VDB=0.0066;AF1=0.5;AC1=1;DP4=2,9,2,10;MQ=59;FQ=87;PV4=1,1.4e-07,0.18,1 GT:PL:GQ 0/1:114,0,200:99 chr3 187443267 . C T 14.2 . DP=5;VDB=0.0133;AF1=0.5;AC1=1;DP4=2,0,3,0;MQ=50;FQ=13.1;PV4=1,0.0086,1,1 GT:PL:GQ 0/1:44,0,42:43 chr3 187447032 . G A 160 . DP=65;VDB=0.0392;AF1=0.5;AC1=1;DP4=23,15,14,13;MQ=60;FQ=163;PV4=0.61,6.8e-17,1,0.48 GT:PL:GQ 0/1:190,0,255:99 chr3 187450128 . C T 91 . DP=13;VDB=0.0373;AF1=0.5;AC1=1;DP4=5,2,6,0;MQ=60;FQ=94;PV4=0.46,1,1,1 GT:PL:GQ 0/1:121,0,163:99 chr3 187451609 . A G 222 . DP=30;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,6,24;MQ=60;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr3 187451701 . T C 82.5 . DP=4;VDB=0.0049;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:115,12,0:21 chr3 187451709 . C T 23 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:55,9,0:15 chr3 187897059 . G A 225 . DP=63;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,11,19,13;MQ=60;FQ=225;PV4=0.8,0.14,0.16,1 GT:PL:GQ 0/1:255,0,255:99 chr3 187897424 . A C 8.64 . DP=10;VDB=0.0220;AF1=0.5;AC1=1;DP4=1,6,1,2;MQ=60;FQ=11.3;PV4=1,0.0001,1,1 GT:PL:GQ 0/1:38,0,158:40 chr3 188202323 . C T 184 . DP=39;VDB=0.0140;AF1=0.5;AC1=1;DP4=18,0,20,1;MQ=60;FQ=151;PV4=1,0.23,1,1 GT:PL:GQ 0/1:214,0,178:99 chr3 188202550 . A T 75 . DP=30;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,1,29;MQ=60;FQ=-117 GT:PL:GQ 1/1:108,90,0:99 chr3 188202582 . G T 71 . DP=17;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,13;MQ=60;FQ=-66 GT:PL:GQ 1/1:104,39,0:75 chr3 188242681 . G T 58.3 . DP=13;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,1,4;MQ=55;FQ=-42 GT:PL:GQ 1/1:91,15,0:27 chr3 188464248 . GT GTT 172 . INDEL;DP=88;VDB=0.0380;AF1=0.5;AC1=1;DP4=43,13,28,2;MQ=60;FQ=175;PV4=0.074,1,1,0.44 GT:PL:GQ 0/1:210,0,255:99 chr3 188478197 . ggtgtgtgtgtgtgtgtgtgtgtgtgtg gGTGTgtgtgtgtgtgtgtgtgtgtgtgtgtg,gGTGTGTgtgtgtgtgtgtgtgtgtgtgtgtgtg 19.5 . INDEL;DP=7;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,0,2;MQ=47;FQ=-37.5 GT:PL:GQ 1/1:80,26,23,57,0,54:6 chr3 188590358 . C T 169 . DP=66;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,48,18;MQ=60;FQ=-226 GT:PL:GQ 1/1:202,199,0:99 chr3 189033292 . C G 225 . DP=85;VDB=0.0345;AF1=0.5;AC1=1;DP4=28,18,27,10;MQ=59;FQ=225;PV4=0.35,1,1,0.1 GT:PL:GQ 0/1:255,0,255:99 chr3 189033298 . C T 152 . DP=88;VDB=0.0365;AF1=0.5;AC1=1;DP4=30,18,27,12;MQ=59;FQ=155;PV4=0.65,5.9e-32,1,0.25 GT:PL:GQ 0/1:182,0,255:99 chr3 189038648 . T C 205 . DP=44;VDB=0.0392;AF1=0.5;AC1=1;DP4=5,20,4,14;MQ=59;FQ=208;PV4=1,0.0061,0.12,0.17 GT:PL:GQ 0/1:235,0,255:99 chr3 189349247 . A T 51 . DP=34;VDB=0.0322;AF1=0.5;AC1=1;DP4=16,3,13,1;MQ=59;FQ=54;PV4=0.62,3.2e-16,0.41,1 GT:PL:GQ 0/1:81,0,254:84 chr3 189507518 . C CAGAG 217 . INDEL;DP=47;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,4,18,4;MQ=57;FQ=217;PV4=1,1,0.0085,0.22 GT:PL:GQ 0/1:255,0,255:99 chr3 189585852 . C T 48 . DP=47;VDB=0.0244;AF1=0.5;AC1=1;DP4=3,24,1,18;MQ=60;FQ=51;PV4=0.63,5.6e-17,1,1 GT:PL:GQ 0/1:78,0,255:81 chr3 189587091 . A G 86 . DP=65;VDB=0.0099;AF1=0.5;AC1=1;DP4=26,6,29,3;MQ=59;FQ=89;PV4=0.47,4.9e-22,0.078,1 GT:PL:GQ 0/1:116,0,255:99 chr3 189587274 . A G 167 . DP=14;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,13;MQ=58;FQ=-66 GT:PL:GQ 1/1:200,39,0:75 chr3 189604149 . T G 222 . DP=83;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,57,19;MQ=60;FQ=-256 GT:PL:GQ 1/1:255,229,0:99 chr3 189604160 . T C 222 . DP=82;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,57,24;MQ=60;FQ=-268 GT:PL:GQ 1/1:255,241,0:99 chr3 189625218 . G A 155 . DP=59;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,18,9,21;MQ=59;FQ=158;PV4=1,4.2e-21,1,1 GT:PL:GQ 0/1:185,0,255:99 chr3 189689904 . A G 151 . DP=21;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,3,17;MQ=60;FQ=-87 GT:PL:GQ 1/1:184,60,0:99 chr3 189690861 . T A 34.8 . DP=3;VDB=0.0098;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:66,6,0:10 chr3 189691499 . G A 26.1 . DP=5;VDB=0.0003;AF1=0.5102;AC1=1;DP4=1,0,4,0;MQ=46;FQ=-13.2;PV4=1,0.017,1,1 GT:PL:GQ 0/1:56,0,14:17 chr3 189692565 . G A 157 . DP=20;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,4,16;MQ=60;FQ=-87 GT:PL:GQ 1/1:190,60,0:99 chr3 189702200 . T C 42.8 . DP=2;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:74,6,0:10 chr3 189702395 . TAAAAAAAAAAA TAAAAAAAAAA 9.92 . INDEL;DP=18;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-79.5 GT:PL:GQ 1/1:50,45,0:51 chr3 189705542 . A G 84 . DP=14;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,12;MQ=60;FQ=-66 GT:PL:GQ 1/1:117,39,0:75 chr3 189713205 . T C 52 . DP=53;VDB=0.0400;AF1=0.5;AC1=1;DP4=11,22,5,13;MQ=58;FQ=55;PV4=0.76,1.4e-19,1,0.37 GT:PL:GQ 0/1:82,0,255:85 chr3 189838018 . G T 46 . DP=3;VDB=0.0220;AF1=1;AC1=2;DP4=0,0,2,1;MQ=52;FQ=-36 GT:PL:GQ 1/1:78,9,0:16 chr3 190030680 . A G 222 . DP=79;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,50,22;MQ=60;FQ=-209;PV4=1,0.23,1,0.25 GT:PL:GQ 1/1:255,182,0:99 chr3 190106071 . AGGG AGG 217 . INDEL;DP=102;VDB=0.0392;AF1=0.5;AC1=1;DP4=32,27,15,25;MQ=59;FQ=217;PV4=0.15,0.00024,0.077,0.053 GT:PL:GQ 0/1:255,0,255:99 chr3 190106242 . T C 104 . DP=35;VDB=0.0399;AF1=0.5;AC1=1;DP4=2,24,3,5;MQ=60;FQ=107;PV4=0.072,0.16,1,1 GT:PL:GQ 0/1:134,0,239:99 chr3 190157898 . G A 82 . DP=11;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:115,33,0:63 chr3 190282197 . G A 132 . DP=78;VDB=0.0298;AF1=0.5;AC1=1;DP4=4,28,6,40;MQ=60;FQ=135;PV4=1,9.8e-34,1,1 GT:PL:GQ 0/1:162,0,255:99 chr3 190333162 . TG T 214 . INDEL;DP=34;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,20;MQ=60;FQ=-131 GT:PL:GQ 1/1:255,96,0:99 chr3 190341241 . C A 222 . DP=66;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,5,55;MQ=60;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr3 190341292 . C T 162 . DP=15;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,14;MQ=60;FQ=-69 GT:PL:GQ 1/1:195,42,0:81 chr3 190345098 . gtttttttttT gttttttttT 27.5 . INDEL;DP=18;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,12,5;MQ=57;FQ=-85.5 GT:PL:GQ 1/1:68,51,0:75 chr3 190347391 . C T 78 . DP=28;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,27;MQ=60;FQ=-108 GT:PL:GQ 1/1:111,81,0:99 chr3 190578566 . A G 100 . DP=27;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,8,7,5;MQ=60;FQ=103;PV4=0.7,6.2e-14,1,1 GT:PL:GQ 0/1:130,0,255:99 chr3 190594309 . G A 80.1 . DP=11;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,3,3;MQ=31;FQ=-45 GT:PL:GQ 1/1:113,18,0:33 chr3 190594334 . A G 71.1 . DP=7;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,1,6;MQ=33;FQ=-48 GT:PL:GQ 1/1:104,21,0:39 chr3 190936482 . A C 90 . DP=67;VDB=0.0380;AF1=0.5;AC1=1;DP4=36,6,21,4;MQ=59;FQ=93;PV4=1,3e-21,0.14,1 GT:PL:GQ 0/1:120,0,255:99 chr3 190967718 . TA T 12.7 . INDEL;DP=6;VDB=0.0014;AF1=0.5;AC1=1;DP4=4,0,2,0;MQ=60;FQ=15.6;PV4=1,0.26,1,1 GT:PL:GQ 0/1:50,0,102:53 chr3 190967779 . A G 111 . DP=48;VDB=0.0322;AF1=0.5;AC1=1;DP4=23,4,17,3;MQ=60;FQ=114;PV4=1,3.3e-16,1,1 GT:PL:GQ 0/1:141,0,255:99 chr3 190980797 . A G 46 . DP=16;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,9,2,4;MQ=60;FQ=49;PV4=0.52,2.4e-07,1,1 GT:PL:GQ 0/1:76,0,190:79 chr3 190991384 . G A 225 . DP=76;VDB=0.0380;AF1=0.5;AC1=1;DP4=21,16,14,25;MQ=60;FQ=225;PV4=0.11,0.24,0.17,1 GT:PL:GQ 0/1:255,0,255:99 chr3 190991439 . T C 112 . DP=54;VDB=0.0392;AF1=0.5;AC1=1;DP4=7,25,4,18;MQ=59;FQ=115;PV4=1,1.4e-18,0.4,1 GT:PL:GQ 0/1:142,0,255:99 chr3 190999790 . A G 3.54 . DP=4;VDB=0.0192;AF1=0.4998;AC1=1;DP4=2,0,2,0;MQ=60;FQ=5.46;PV4=1,0.015,1,0.17 GT:PL:GQ 0/1:31,0,60:30 chr3 190999872 . G A 225 . DP=49;VDB=0.0399;AF1=0.5;AC1=1;DP4=19,5,20,4;MQ=60;FQ=225;PV4=1,0.15,0.16,0.4 GT:PL:GQ 0/1:255,0,255:99 chr3 190999917 . C A 64 . DP=58;VDB=0.0216;AF1=0.5;AC1=1;DP4=21,11,15,10;MQ=60;FQ=67;PV4=0.78,7.9e-28,1,1 GT:PL:GQ 0/1:94,0,255:97 chr3 190999990 . C T 130 . DP=46;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,16,5,18;MQ=60;FQ=133;PV4=0.74,1e-18,1,0.32 GT:PL:GQ 0/1:160,0,255:99 chr3 191047532 . A G 210 . DP=39;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,13,25;MQ=60;FQ=-141 GT:PL:GQ 1/1:243,114,0:99 chr3 191074873 . C G 225 . DP=52;VDB=0.0244;AF1=0.5;AC1=1;DP4=19,9,15,8;MQ=59;FQ=225;PV4=1,1,0.44,0.44 GT:PL:GQ 0/1:255,0,255:99 chr3 191075012 . G T 102 . DP=37;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,10,5,10;MQ=59;FQ=105;PV4=0.32,4e-14,1,0.25 GT:PL:GQ 0/1:132,0,255:99 chr3 191075656 . G A 117 . DP=17;VDB=0.0006;AF1=0.5;AC1=1;DP4=8,0,9,0;MQ=60;FQ=113;PV4=1,0.23,1,1 GT:PL:GQ 0/1:147,0,141:99 chr3 191075902 . C T 90 . DP=45;VDB=0.0216;AF1=0.5;AC1=1;DP4=0,22,2,21;MQ=60;FQ=93;PV4=0.49,3e-22,1,0.43 GT:PL:GQ 0/1:120,0,178:99 chr3 191087546 . A G 22 . DP=20;VDB=0.0003;AF1=0.5;AC1=1;DP4=13,0,7,0;MQ=59;FQ=25;PV4=1,2.9e-06,1,1 GT:PL:GQ 0/1:52,0,173:55 chr3 191087551 . G A 26 . DP=23;VDB=0.0025;AF1=0.5;AC1=1;DP4=14,0,9,0;MQ=59;FQ=29;PV4=1,5.4e-11,1,1 GT:PL:GQ 0/1:56,0,178:59 chr3 191093053 . T C 225 . DP=67;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,13,17,17;MQ=60;FQ=225;PV4=0.8,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 191093175 . T A 46 . DP=64;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,25,5,16;MQ=60;FQ=49;PV4=0.56,1.5e-20,1,1 GT:PL:GQ 0/1:76,0,255:79 chr3 191093310 . A G 59 . DP=33;VDB=0.0322;AF1=0.5;AC1=1;DP4=5,9,3,13;MQ=59;FQ=62;PV4=0.42,2.9e-12,1,1 GT:PL:GQ 0/1:89,0,241:92 chr3 191093384 . A G 56 . DP=15;VDB=0.0271;AF1=0.5;AC1=1;DP4=3,5,2,5;MQ=60;FQ=59;PV4=1,1.2e-09,1,0.19 GT:PL:GQ 0/1:86,0,200:89 chr3 191093434 . A G 3.01 . DP=7;VDB=0.0084;AF1=0.4997;AC1=1;DP4=1,4,1,1;MQ=60;FQ=4.77;PV4=1,0.015,1,1 GT:PL:GQ 0/1:30,0,131:28 chr3 191093475 . T C 6.2 . DP=4;VDB=0.0149;AF1=0.4999;AC1=1;DP4=0,2,0,2;MQ=60;FQ=8.65;PV4=1,0.029,1,1 GT:PL:GQ 0/1:35,0,63:36 chr3 191097966 . T C 172 . DP=31;VDB=0.0033;AF1=0.5;AC1=1;DP4=13,4,9,3;MQ=60;FQ=175;PV4=1,1,1,0.3 GT:PL:GQ 0/1:202,0,244:99 chr3 191098121 . C T 42 . DP=24;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,11,1,10;MQ=60;FQ=45;PV4=1,1.1e-12,1,0.4 GT:PL:GQ 0/1:72,0,220:75 chr3 191098731 . G A 107 . DP=26;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,16,1,7;MQ=60;FQ=110;PV4=1,0.4,1,1 GT:PL:GQ 0/1:137,0,236:99 chr3 191100561 . C A 35 . DP=73;VDB=0.0345;AF1=0.5;AC1=1;DP4=32,12,20,5;MQ=59;FQ=38;PV4=0.57,7.5e-38,1,1 GT:PL:GQ 0/1:65,0,255:68 chr3 191107192 . A G 49 . DP=18;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,0,9,0;MQ=60;FQ=52;PV4=1,9.7e-09,1,1 GT:PL:GQ 0/1:79,0,148:82 chr3 191178925 . G A 29 . DP=4;VDB=0.0196;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=26.6;PV4=1,1,1,1 GT:PL:GQ 0/1:59,0,55:57 chr3 191179193 . A G 217 . DP=65;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,31,30;MQ=60;FQ=-211 GT:PL:GQ 1/1:250,184,0:99 chr3 191179303 . C T 156 . DP=33;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,4,28;MQ=59;FQ=-123 GT:PL:GQ 1/1:189,96,0:99 chr3 192125768 . A G 58 . DP=24;VDB=0.0216;AF1=0.5;AC1=1;DP4=8,5,7,3;MQ=60;FQ=61;PV4=1,1e-05,1,1 GT:PL:GQ 0/1:88,0,225:91 chr3 192994757 . A G 12 . DP=2;VDB=0.0167;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr3 193007560 . G A 11.1 . DP=2;VDB=0.0196;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr3 193016895 . T C 113 . DP=7;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:146,18,0:33 chr3 193023585 . TAA TA 214 . INDEL;DP=13;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,4,9;MQ=60;FQ=-73.5 GT:PL:GQ 1/1:255,39,0:75 chr3 193031926 . C T 59 . DP=43;VDB=0.0380;AF1=0.5;AC1=1;DP4=20,6,11,6;MQ=60;FQ=62;PV4=0.49,2.7e-27,1,0.33 GT:PL:GQ 0/1:89,0,255:92 chr3 193036794 . G C 222 . DP=37;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,20,16;MQ=60;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr3 193042776 . T C 167 . DP=32;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,6,25;MQ=60;FQ=-120 GT:PL:GQ 1/1:200,93,0:99 chr3 193044923 . T C 35.3 . DP=5;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:68,15,0:27 chr3 193062906 . G A 133 . DP=44;VDB=0.0244;AF1=0.5;AC1=1;DP4=0,27,0,17;MQ=59;FQ=136;PV4=1,1,0.11,0.21 GT:PL:GQ 0/1:163,0,188:99 chr3 193068800 . G A 31 . DP=14;VDB=0.0042;AF1=0.5;AC1=1;DP4=7,0,7,0;MQ=58;FQ=34;PV4=1,4.9e-08,0.17,0.49 GT:PL:GQ 0/1:61,0,141:64 chr3 193080414 . C G 148 . DP=83;VDB=0.0099;AF1=0.5;AC1=1;DP4=7,30,8,35;MQ=59;FQ=151;PV4=1,1.4e-34,0.094,0.19 GT:PL:GQ 0/1:178,0,255:99 chr3 193081206 . G A 36 . DP=15;VDB=0.0042;AF1=0.5;AC1=1;DP4=0,6,0,9;MQ=60;FQ=39;PV4=1,1.4e-07,1,1 GT:PL:GQ 0/1:66,0,122:69 chr3 193090255 . C T 114 . DP=18;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,10,0,8;MQ=60;FQ=117;PV4=1,0.33,1,0.33 GT:PL:GQ 0/1:144,0,165:99 chr3 193090260 . T C 114 . DP=18;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,10,0,8;MQ=60;FQ=117;PV4=1,0.14,1,0.36 GT:PL:GQ 0/1:144,0,166:99 chr3 193096529 . C T 219 . DP=24;VDB=0.0099;AF1=0.5;AC1=1;DP4=3,6,3,12;MQ=59;FQ=145;PV4=0.63,1,1,1 GT:PL:GQ 0/1:249,0,172:99 chr3 193125054 . C G 11.3 . DP=12;VDB=0.0022;AF1=0.5;AC1=1;DP4=5,3,2,0;MQ=60;FQ=14.2;PV4=1,1,1,1 GT:PL:GQ 0/1:41,0,192:43 chr3 193125258 . A G 80 . DP=18;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,9,0,6;MQ=60;FQ=83;PV4=0.51,0.32,1,1 GT:PL:GQ 0/1:110,0,217:99 chr3 193128900 . G A 28 . DP=47;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,15,2,12;MQ=59;FQ=31;PV4=0.023,1.2e-16,1,1 GT:PL:GQ 0/1:58,0,255:61 chr3 193153562 . T C 183 . DP=41;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,13,1,24;MQ=59;FQ=149;PV4=1,0.34,0.23,1 GT:PL:GQ 0/1:213,0,176:99 chr3 193180510 . G T 225 . DP=46;VDB=0.0380;AF1=0.5;AC1=1;DP4=17,9,11,8;MQ=60;FQ=225;PV4=0.76,0.44,1,0.22 GT:PL:GQ 0/1:255,0,255:99 chr3 193180592 . G A 153 . DP=40;VDB=0.0400;AF1=0.5;AC1=1;DP4=6,20,2,11;MQ=60;FQ=156;PV4=0.69,1,1,0.016 GT:PL:GQ 0/1:183,0,255:99 chr3 193180661 . C T 18.1 . DP=7;VDB=0.0167;AF1=0.5;AC1=1;DP4=0,5,0,2;MQ=60;FQ=21;PV4=1,1,1,1 GT:PL:GQ 0/1:48,0,112:51 chr3 193183817 . A G 220 . DP=59;VDB=0.0298;AF1=0.5;AC1=1;DP4=25,14,15,5;MQ=60;FQ=222;PV4=0.56,0.42,0.082,1 GT:PL:GQ 0/1:250,0,255:99 chr3 193209018 . G A 129 . DP=25;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,0,13,0;MQ=60;FQ=132;PV4=1,0.005,1,0.26 GT:PL:GQ 0/1:159,0,169:99 chr3 193209178 . T C 225 . DP=50;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,18,7,21;MQ=60;FQ=225;PV4=0.73,1.6e-05,1,0.36 GT:PL:GQ 0/1:255,0,255:99 chr3 193220219 . A T 26 . DP=17;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,0,10,0;MQ=59;FQ=29;PV4=1,1.3e-18,0.23,1 GT:PL:GQ 0/1:56,0,123:59 chr3 193355074 . T C 222 . DP=27;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,16,10;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr3 194061826 . C T 221 . DP=11;VDB=0.0359;AF1=1;AC1=2;DP4=0,0,5,5;MQ=58;FQ=-57 GT:PL:GQ 1/1:254,30,0:57 chr3 194061906 . T C 179 . DP=17;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,12,5;MQ=60;FQ=-78 GT:PL:GQ 1/1:212,51,0:99 chr3 194062519 . C T 222 . DP=67;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,37,28;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr3 194062565 . C T 222 . DP=73;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,40,29;MQ=60;FQ=-235 GT:PL:GQ 1/1:255,208,0:99 chr3 194063300 . T C 222 . DP=83;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,43,36;MQ=60;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr3 194118874 . T C 219 . DP=78;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,46,27;MQ=60;FQ=-247 GT:PL:GQ 1/1:252,220,0:99 chr3 194149700 . G A 42 . DP=9;VDB=0.0217;AF1=0.5;AC1=1;DP4=1,5,0,3;MQ=60;FQ=45;PV4=1,1,1,1 GT:PL:GQ 0/1:72,0,145:75 chr3 194168500 . G C 77 . DP=7;VDB=0.0008;AF1=0.5;AC1=1;DP4=2,0,5,0;MQ=60;FQ=16.1;PV4=1,0.47,1,0.2 GT:PL:GQ 0/1:107,0,43:46 chr3 194176712 . C A 89 . DP=24;VDB=0.0359;AF1=0.5;AC1=1;DP4=5,5,2,12;MQ=60;FQ=92;PV4=0.085,5.8e-14,1,1 GT:PL:GQ 0/1:119,0,219:99 chr3 194180743 . G T 164 . DP=21;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,8,2,8;MQ=60;FQ=167;PV4=1,1,1,0.42 GT:PL:GQ 0/1:194,0,212:99 chr3 194313632 . G A 156 . DP=22;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,2,10,1;MQ=59;FQ=159;PV4=1,1,0.16,1 GT:PL:GQ 0/1:186,0,198:99 chr3 194313832 . T C 222 . DP=24;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,19;MQ=60;FQ=-96 GT:PL:GQ 1/1:255,69,0:99 chr3 194324939 . A G 38 . DP=10;VDB=0.0003;AF1=0.5;AC1=1;DP4=5,0,5,0;MQ=60;FQ=41;PV4=1,0.00012,1,1 GT:PL:GQ 0/1:68,0,110:71 chr3 194324982 . C A 58 . DP=27;VDB=0.0164;AF1=0.5;AC1=1;DP4=10,1,16,0;MQ=60;FQ=61;PV4=0.41,1.2e-12,1,0.24 GT:PL:GQ 0/1:88,0,177:91 chr3 194325006 . A G 114 . DP=36;VDB=0.0322;AF1=0.5;AC1=1;DP4=19,2,11,4;MQ=60;FQ=117;PV4=0.21,7.4e-07,1,1 GT:PL:GQ 0/1:144,0,216:99 chr3 194325010 . G A 223 . DP=42;VDB=0.0399;AF1=0.5;AC1=1;DP4=12,5,18,5;MQ=60;FQ=214;PV4=0.72,0.025,1,0.36 GT:PL:GQ 0/1:253,0,241:99 chr3 194325325 . C T 10.2 . DP=2;VDB=0.0157;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:41,6,0:8 chr3 194337901 . T C 51.5 . DP=4;VDB=0.0126;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-39 GT:PL:GQ 1/1:84,12,0:21 chr3 194338423 . C T 225 . DP=49;VDB=0.0322;AF1=0.5;AC1=1;DP4=4,23,5,17;MQ=59;FQ=225;PV4=0.71,0.32,0.44,0.4 GT:PL:GQ 0/1:255,0,255:99 chr3 194344526 . G C 125 . DP=16;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,6,1,7;MQ=60;FQ=128;PV4=1,1,1,0.48 GT:PL:GQ 0/1:155,0,165:99 chr3 194346544 . T A 222 . DP=54;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,43,9;MQ=59;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr3 194346553 . T C 222 . DP=64;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,49,9;MQ=60;FQ=-202 GT:PL:GQ 1/1:255,175,0:99 chr3 194346803 . A G 159 . DP=12;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:192,36,0:69 chr3 194349178 . C T 225 . DP=37;VDB=0.0216;AF1=0.5;AC1=1;DP4=15,3,12,7;MQ=60;FQ=218;PV4=0.27,0.11,1,0.11 GT:PL:GQ 0/1:255,0,245:99 chr3 194353875 . G T 18.1 . DP=5;VDB=0.0175;AF1=0.5;AC1=1;DP4=1,1,1,2;MQ=55;FQ=15.7;PV4=1,0.15,0.25,1 GT:PL:GQ 0/1:48,0,44:46 chr3 194373832 . T C 154 . DP=164;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,63,85;MQ=59;FQ=-282 GT:PL:GQ 1/1:187,255,0:99 chr3 194373833 . G A 158 . DP=163;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,63,85;MQ=59;FQ=-282 GT:PL:GQ 1/1:191,255,0:99 chr3 194379567 . A G 21.5 . DP=4;VDB=0.0049;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:54,12,0:21 chr3 194379596 . C A 93 . DP=16;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,13,2;MQ=60;FQ=-72 GT:PL:GQ 1/1:126,45,0:87 chr3 194379646 . TCCC TCCCC 214 . INDEL;DP=44;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,35,8;MQ=60;FQ=-164 GT:PL:GQ 1/1:255,129,0:99 chr3 194379905 . TAAAAAAA TAAAAAA 18.5 . INDEL;DP=13;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-70.5 GT:PL:GQ 1/1:59,36,0:51 chr3 194381530 . A G 109 . DP=20;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,17,3;MQ=59;FQ=-87 GT:PL:GQ 1/1:142,60,0:99 chr3 194381680 . G A 55.3 . DP=7;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,1,4;MQ=60;FQ=-42 GT:PL:GQ 1/1:88,15,0:27 chr3 194381716 . G C 8.44 . DP=2;VDB=0.0127;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr3 194381742 . C T 3.41 . DP=2;VDB=0.0127;AF1=1;AC1=2;DP4=0,0,0,2;MQ=60;FQ=-33 GT:PL:GQ 1/1:32,6,0:4 chr3 194386136 . C T 119 . DP=8;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:152,18,0:33 chr3 194386881 . A G 222 . DP=57;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,39,16;MQ=60;FQ=-193 GT:PL:GQ 1/1:255,166,0:99 chr3 194387300 . C T 29 . DP=37;VDB=0.0345;AF1=1;AC1=2;DP4=0,1,0,32;MQ=59;FQ=-89;PV4=1,3.7e-10,0.43,1 GT:PL:GQ 1/1:62,62,0:88 chr3 194390617 . G C 94 . DP=24;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,21,2;MQ=60;FQ=-96 GT:PL:GQ 1/1:127,69,0:99 chr3 194390713 . C A 222 . DP=125;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,87,34;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 194390869 . GAAAAAA GAAAAAAA 80.5 . INDEL;DP=38;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,31;MQ=60;FQ=-134 GT:PL:GQ 1/1:121,99,0:99 chr3 194392683 . A C 149 . DP=50;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,41,7;MQ=60;FQ=-171 GT:PL:GQ 1/1:182,144,0:99 chr3 194408704 . A G 123 . DP=37;VDB=0.0140;AF1=0.5;AC1=1;DP4=7,12,9,9;MQ=59;FQ=126;PV4=0.51,1e-11,0.16,1 GT:PL:GQ 0/1:153,0,255:99 chr3 194999996 . T A 32.1 . DP=11;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:65,18,0:33 chr3 195076877 . C G 222 . DP=84;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,39,40;MQ=60;FQ=-265 GT:PL:GQ 1/1:255,238,0:99 chr3 195245771 . C T 206 . DP=53;VDB=0.0244;AF1=0.5;AC1=1;DP4=24,3,22,2;MQ=52;FQ=209;PV4=1,1,0.19,1 GT:PL:GQ 0/1:236,0,255:99 chr3 195245805 . G A 199 . DP=83;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,57,19;MQ=54;FQ=-256 GT:PL:GQ 1/1:232,229,0:99 chr3 195295702 . TGG TGGCGGG 43.4 . INDEL;DP=4;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,3,0;MQ=42;FQ=-43.5 GT:PL:GQ 1/1:83,9,0:16 chr3 195300676 . A G 108 . DP=5;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:141,15,0:27 chr3 195306055 . A G 197 . DP=16;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,15,1;MQ=60;FQ=-75 GT:PL:GQ 1/1:230,48,0:93 chr3 195345953 . C T 225 . DP=141;VDB=0.0190;AF1=0.5;AC1=1;DP4=17,50,21,53;MQ=35;FQ=225;PV4=0.71,0.029,0.0019,1 GT:PL:GQ 0/1:255,0,255:99 chr3 195346331 . C G 28 . DP=12;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,3,3,3;MQ=26;FQ=31;PV4=1,6.4e-10,1,1 GT:PL:GQ 0/1:58,0,90:61 chr3 195346477 . C T 225 . DP=100;VDB=0.0393;AF1=0.5;AC1=1;DP4=18,14,44,17;MQ=42;FQ=225;PV4=0.17,0.46,0.41,0.03 GT:PL:GQ 0/1:255,0,255:99 chr3 195346906 . C T 214 . DP=199;VDB=0.0398;AF1=0.5;AC1=1;DP4=78,59,36,23;MQ=58;FQ=217;PV4=0.64,0.0094,0.00053,0.049 GT:PL:GQ 0/1:244,0,255:99 chr3 195346914 . G A 204 . DP=199;VDB=0.0392;AF1=0.5;AC1=1;DP4=80,59,34,21;MQ=58;FQ=207;PV4=0.63,0.34,7.9e-05,0.33 GT:PL:GQ 0/1:234,0,255:99 chr3 195347059 . C T 31 . DP=41;VDB=0.0004;AF1=0.5;AC1=1;DP4=16,15,3,7;MQ=59;FQ=34;PV4=0.29,2.8e-07,0.28,1 GT:PL:GQ 0/1:61,0,255:64 chr3 195395328 . T C 100 . DP=27;VDB=0.0053;AF1=0.5;AC1=1;DP4=10,2,11,3;MQ=41;FQ=103;PV4=1,8.9e-11,0.37,0.27 GT:PL:GQ 0/1:130,0,160:99 chr3 195395533 . C T 132 . DP=171;VDB=0.0392;AF1=0.5;AC1=1;DP4=29,65,25,51;MQ=43;FQ=135;PV4=0.87,1.4e-50,1,0.062 GT:PL:GQ 0/1:162,0,255:99 chr3 195395549 . C CAT 217 . INDEL;DP=147;VDB=0.0322;AF1=0.5;AC1=1;DP4=9,23,22,88;MQ=43;FQ=101;PV4=0.34,1,1,1 GT:PL:GQ 0/1:255,0,136:99 chr3 195398250 . C A 53 . DP=52;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,25,1,26;MQ=22;FQ=44.7;PV4=1,9.1e-27,0.34,1 GT:PL:GQ 0/1:83,0,72:75 chr3 195399599 . T C 118 . DP=77;VDB=0.0380;AF1=0.5;AC1=1;DP4=18,40,10,9;MQ=43;FQ=121;PV4=0.11,0.01,0.0062,0.39 GT:PL:GQ 0/1:148,0,255:99 chr3 195399620 . C G 113 . DP=55;VDB=0.0099;AF1=0.5;AC1=1;DP4=14,26,6,9;MQ=46;FQ=116;PV4=0.76,0.0015,0.0079,1 GT:PL:GQ 0/1:143,0,255:99 chr3 195399678 . G T 18.1 . DP=8;VDB=0.0001;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=39;FQ=21;PV4=1,3.4e-07,0.13,0.45 GT:PL:GQ 0/1:48,0,71:51 chr3 195426490 . A G 222 . DP=138;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,10,126;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 195447775 . A G 23 . DP=5;VDB=0.0099;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=26;PV4=1,0.11,1,0.27 GT:PL:GQ 0/1:53,0,83:56 chr3 195447834 . C T 89 . DP=23;VDB=0.0244;AF1=0.5;AC1=1;DP4=11,4,3,3;MQ=57;FQ=92;PV4=0.35,0.31,1,0.19 GT:PL:GQ 0/1:119,0,252:99 chr3 195447871 . C T 48 . DP=31;VDB=0.0118;AF1=0.5;AC1=1;DP4=14,8,2,7;MQ=57;FQ=51;PV4=0.054,0.0003,1,1 GT:PL:GQ 0/1:78,0,255:81 chr3 195447886 . G C 221 . DP=31;VDB=0.0322;AF1=0.5;AC1=1;DP4=6,7,7,9;MQ=57;FQ=213;PV4=1,0.13,0.027,1 GT:PL:GQ 0/1:251,0,240:99 chr3 195452619 . C T 35 . DP=31;VDB=0.0004;AF1=0.5;AC1=1;DP4=19,2,9,1;MQ=22;FQ=38;PV4=1,4.3e-07,1,1 GT:PL:GQ 0/1:65,0,105:68 chr3 195452645 . G A 61 . DP=35;VDB=0.0099;AF1=0.5;AC1=1;DP4=19,4,9,3;MQ=22;FQ=64;PV4=0.67,0.00021,1,0.46 GT:PL:GQ 0/1:91,0,129:94 chr3 195452668 . C G 22 . DP=42;VDB=0.0393;AF1=0.5;AC1=1;DP4=21,9,9,3;MQ=23;FQ=25;PV4=1,2.6e-14,0.38,0.46 GT:PL:GQ 0/1:52,0,161:55 chr3 195452689 . C T 128 . DP=33;VDB=0.0373;AF1=0.5;AC1=1;DP4=4,8,8,11;MQ=22;FQ=67;PV4=0.72,0.15,1,1 GT:PL:GQ 0/1:158,0,94:97 chr3 195452799 . C T 185 . DP=42;VDB=0.0365;AF1=0.5008;AC1=1;DP4=2,5,28,5;MQ=34;FQ=-4.12;PV4=0.0062,0.18,1,1 GT:PL:GQ 0/1:215,0,25:28 chr3 195452951 . G C 222 . DP=165;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,110,48;MQ=53;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 195452987 . G A 135 . DP=212;VDB=0.0398;AF1=0.5;AC1=1;DP4=80,64,41,20;MQ=52;FQ=138;PV4=0.16,1.8e-15,1.7e-18,0.029 GT:PL:GQ 0/1:165,0,255:99 chr3 195452991 . C T 146 . DP=224;VDB=0.0400;AF1=0.5;AC1=1;DP4=85,68,42,21;MQ=52;FQ=149;PV4=0.17,4.4e-14,1.7e-18,0.2 GT:PL:GQ 0/1:176,0,255:99 chr3 195453064 . T G 216 . DP=181;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,59,117;MQ=51;FQ=-282 GT:PL:GQ 1/1:249,255,0:99 chr3 195453205 . G A 82 . DP=129;VDB=0.0380;AF1=0.5;AC1=1;DP4=61,27,27,11;MQ=56;FQ=85;PV4=1,3e-30,4.8e-06,1 GT:PL:GQ 0/1:112,0,255:99 chr3 195453243 . C T 80 . DP=177;VDB=0.0393;AF1=0.5;AC1=1;DP4=65,57,31,20;MQ=56;FQ=83;PV4=0.4,4.8e-32,6.2e-08,0.18 GT:PL:GQ 0/1:110,0,255:99 chr3 195453257 . G A 200 . DP=164;VDB=0.0244;AF1=0.5;AC1=1;DP4=60,57,27,18;MQ=56;FQ=203;PV4=0.38,1,1.6e-07,1 GT:PL:GQ 0/1:230,0,255:99 chr3 195453406 . G C 136 . DP=143;VDB=0.0399;AF1=0.5;AC1=1;DP4=33,59,17,33;MQ=53;FQ=139;PV4=0.86,4.7e-21,9.6e-16,0.048 GT:PL:GQ 0/1:166,0,255:99 chr3 195453412 . C T 59 . DP=139;VDB=0.0400;AF1=0.5;AC1=1;DP4=33,60,13,24;MQ=53;FQ=62;PV4=1,3.4e-30,3e-17,1 GT:PL:GQ 0/1:89,0,255:92 chr3 195456561 . C G 52 . DP=44;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,15,3,9;MQ=59;FQ=55;PV4=0.47,1.2e-09,1,1 GT:PL:GQ 0/1:82,0,255:85 chr3 195460236 . G A 64.1 . DP=7;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:97,18,0:33 chr3 195475989 . G A 55 . DP=59;VDB=0.0216;AF1=0.5;AC1=1;DP4=16,27,2,14;MQ=58;FQ=58;PV4=0.11,2.2e-09,1,1 GT:PL:GQ 0/1:85,0,255:88 chr3 195476085 . A G 107 . DP=5;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:140,15,0:27 chr3 195477791 . G A 117 . DP=15;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,13,2;MQ=57;FQ=-72 GT:PL:GQ 1/1:150,45,0:87 chr3 195479256 . T C 152 . DP=32;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,25,5;MQ=59;FQ=-117 GT:PL:GQ 1/1:185,90,0:99 chr3 195484244 . G A 185 . DP=16;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,11;MQ=60;FQ=-75 GT:PL:GQ 1/1:218,48,0:93 chr3 195487737 . A G 71.1 . DP=8;VDB=0.0081;AF1=1;AC1=2;DP4=0,0,6,1;MQ=57;FQ=-48 GT:PL:GQ 1/1:104,21,0:39 chr3 195489009 . C A 222 . DP=21;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,10,8;MQ=60;FQ=-81 GT:PL:GQ 1/1:255,54,0:99 chr3 195489067 . C G 172 . DP=22;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,9,13;MQ=60;FQ=-93 GT:PL:GQ 1/1:205,66,0:99 chr3 195489669 . C T 96 . DP=12;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:129,33,0:63 chr3 195492027 . T C 184 . DP=28;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,5,18;MQ=60;FQ=-96 GT:PL:GQ 1/1:217,69,0:99 chr3 195495916 . G C 213 . DP=44;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,19,23;MQ=60;FQ=-153 GT:PL:GQ 1/1:246,126,0:99 chr3 195496129 . C T 76 . DP=9;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,1,7;MQ=60;FQ=-51 GT:PL:GQ 1/1:109,24,0:45 chr3 195497174 . C G 222 . DP=47;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,23,21;MQ=59;FQ=-159 GT:PL:GQ 1/1:255,132,0:99 chr3 195497743 . T C 222 . DP=40;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,19;MQ=58;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr3 195497809 . T C 222 . DP=14;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,2,11;MQ=60;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr3 195501149 . C T 117 . DP=12;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,2,10;MQ=60;FQ=-63 GT:PL:GQ 1/1:150,36,0:69 chr3 195501258 . T C 46.5 . DP=4;VDB=0.0041;AF1=1;AC1=2;DP4=0,0,2,2;MQ=60;FQ=-39 GT:PL:GQ 1/1:79,12,0:21 chr3 195505417 . G A 122 . DP=13;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,8;MQ=60;FQ=-63 GT:PL:GQ 1/1:155,36,0:69 chr3 195505664 . G A 222 . DP=36;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,18,15;MQ=58;FQ=-126 GT:PL:GQ 1/1:255,99,0:99 chr3 195505788 . G C 136 . DP=12;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,3,9;MQ=51;FQ=-63 GT:PL:GQ 1/1:169,36,0:69 chr3 195511959 . G A 41 . DP=3;VDB=0.0089;AF1=1;AC1=2;DP4=0,0,1,2;MQ=34;FQ=-36 GT:PL:GQ 1/1:73,9,0:16 chr3 195511993 . A G 93 . DP=17;VDB=0.0001;AF1=0.5;AC1=1;DP4=6,4,3,4;MQ=41;FQ=96;PV4=0.64,0.14,1,0.0087 GT:PL:GQ 0/1:123,0,173:99 chr3 195512004 . T G 186 . DP=25;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,13,11;MQ=44;FQ=-99 GT:PL:GQ 1/1:219,72,0:99 chr3 195512042 . T C 221 . DP=40;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,19,21;MQ=47;FQ=-147 GT:PL:GQ 1/1:254,120,0:99 chr3 195512103 . G A 17.1 . DP=38;VDB=0.0393;AF1=0.5;AC1=1;DP4=11,20,4,3;MQ=53;FQ=20.1;PV4=0.4,1.7e-06,0.3,1 GT:PL:GQ 0/1:47,0,255:50 chr3 195512107 . T A 222 . DP=37;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,14,22;MQ=53;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr3 195512186 . T C 82.1 . DP=7;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,1,6;MQ=59;FQ=-48 GT:PL:GQ 1/1:115,21,0:39 chr3 195515594 . C G 199 . DP=71;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,36,32;MQ=59;FQ=-232 GT:PL:GQ 1/1:232,205,0:99 chr3 195515617 . G C 222 . DP=76;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,34,39;MQ=59;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr3 195516630 . G T 214 . DP=122;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,55,60;MQ=60;FQ=-282 GT:PL:GQ 1/1:247,255,0:99 chr3 195516878 . T C 161 . DP=37;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,18,16;MQ=60;FQ=-129 GT:PL:GQ 1/1:194,102,0:99 chr3 195517258 . G A 222 . DP=110;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,59,47;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 195517321 . G A 222 . DP=127;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,59,61;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr3 195517553 . A C 204 . DP=104;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,37,58;MQ=59;FQ=-282 GT:PL:GQ 1/1:237,255,0:99 chr3 195518112 . TGTCTCC TGTCTCCTGCGTAACAGTCTCC 214 . INDEL;DP=100;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,24,41;MQ=37;FQ=-231 GT:PL:GQ 1/1:255,196,0:99 chr3 195518330 . C G 140 . DP=30;VDB=0.0216;AF1=1;AC1=2;DP4=0,1,5,21;MQ=54;FQ=-79;PV4=1,1.3e-08,1,0.33 GT:PL:GQ 1/1:173,52,0:99 chr3 195538501 . ttctctctctctctctctct ttctctctctctctctct 217 . INDEL;DP=73;VDB=0.0345;AF1=0.5;AC1=1;DP4=29,16,9,8;MQ=60;FQ=217;PV4=0.56,0.092,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 195591056 . C T 225 . DP=88;VDB=0.0380;AF1=0.5;AC1=1;DP4=32,18,17,15;MQ=60;FQ=225;PV4=0.36,1,0.11,0.47 GT:PL:GQ 0/1:255,0,255:99 chr3 195595632 . A G 154 . DP=21;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,6,15;MQ=60;FQ=-90 GT:PL:GQ 1/1:187,63,0:99 chr3 195596907 . T C 222 . DP=40;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,23,16;MQ=60;FQ=-144 GT:PL:GQ 1/1:255,117,0:99 chr3 195599085 . T C 72 . DP=12;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,1,5,0;MQ=60;FQ=75;PV4=1,1,1,0.38 GT:PL:GQ 0/1:102,0,135:99 chr3 195619254 . A G 50 . DP=13;VDB=0.0384;AF1=0.5;AC1=1;DP4=5,2,3,3;MQ=60;FQ=53;PV4=0.59,0.0018,1,1 GT:PL:GQ 0/1:80,0,157:83 chr3 195686891 . T C 9.52 . DP=19;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,8,2,3;MQ=21;FQ=12.3;PV4=1,1,0.22,1 GT:PL:GQ 0/1:39,0,123:41 chr3 195690385 . T C 39 . DP=18;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,7,0,10;MQ=40;FQ=42;PV4=1,1.6e-10,0.027,0.12 GT:PL:GQ 0/1:69,0,113:72 chr3 195690397 . A G 3.01 . DP=8;VDB=0.0040;AF1=0.4997;AC1=1;DP4=0,5,0,3;MQ=51;FQ=4.77;PV4=1,1.7e-05,0,0.32 GT:PL:GQ 0/1:30,0,116:28 chr3 195702704 . T C 55 . DP=49;VDB=0.0343;AF1=0.5;AC1=1;DP4=22,15,7,4;MQ=25;FQ=58;PV4=1,0.34,1,1 GT:PL:GQ 0/1:85,0,219:88 chr3 195702738 . C T 35 . DP=42;VDB=0.0190;AF1=0.5;AC1=1;DP4=23,8,9,1;MQ=26;FQ=38;PV4=0.41,0.35,0.42,1 GT:PL:GQ 0/1:65,0,221:68 chr3 195706589 . T C 90 . DP=26;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,24,2;MQ=29;FQ=-105 GT:PL:GQ 1/1:123,78,0:99 chr3 195778972 . C T 225 . DP=69;VDB=0.0380;AF1=0.5;AC1=1;DP4=6,25,11,24;MQ=60;FQ=225;PV4=0.4,0.023,1,0.38 GT:PL:GQ 0/1:255,0,255:99 chr3 195789414 . T C 122 . DP=14;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,9,4;MQ=60;FQ=-66 GT:PL:GQ 1/1:155,39,0:75 chr3 195789428 . C A 131 . DP=14;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,10,4;MQ=60;FQ=-69 GT:PL:GQ 1/1:164,42,0:81 chr3 195789708 . G T 203 . DP=70;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,41,25;MQ=60;FQ=-226 GT:PL:GQ 1/1:236,199,0:99 chr3 195798258 . T C 170 . DP=156;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,97,51;MQ=60;FQ=-282 GT:PL:GQ 1/1:203,255,0:99 chr3 195800811 . C T 177 . DP=29;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,23,5;MQ=59;FQ=-111 GT:PL:GQ 1/1:210,84,0:99 chr3 195925419 . T C 128 . DP=52;VDB=0.0380;AF1=0.5;AC1=1;DP4=7,16,8,19;MQ=59;FQ=131;PV4=1,3.4e-18,1,1 GT:PL:GQ 0/1:158,0,255:99 chr3 195926288 . A G 20 . DP=11;VDB=0.0041;AF1=0.5;AC1=1;DP4=7,0,4,0;MQ=60;FQ=23;PV4=1,0.00012,1,0.5 GT:PL:GQ 0/1:50,0,135:53 chr3 195926387 . G A 129 . DP=65;VDB=0.0271;AF1=0.5;AC1=1;DP4=24,12,21,6;MQ=60;FQ=132;PV4=0.41,1e-23,1,1 GT:PL:GQ 0/1:159,0,255:99 chr3 195926552 . C T 222 . DP=33;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,28;MQ=60;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr3 195935466 . T G 114 . DP=38;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,17,4,12;MQ=59;FQ=117;PV4=0.67,1.4e-09,0.055,0.35 GT:PL:GQ 0/1:144,0,238:99 chr3 195936382 . G A 39 . DP=26;VDB=0.0099;AF1=0.5;AC1=1;DP4=4,15,2,5;MQ=60;FQ=42;PV4=1,1.2e-07,1,1 GT:PL:GQ 0/1:69,0,255:72 chr3 195937629 . G A 53 . DP=13;VDB=0.0392;AF1=0.5;AC1=1;DP4=1,5,0,7;MQ=58;FQ=56;PV4=0.46,0.083,0.19,0.073 GT:PL:GQ 0/1:83,0,104:86 chr3 195941216 . C G 130 . DP=47;VDB=0.0380;AF1=0.5;AC1=1;DP4=15,5,22,4;MQ=60;FQ=133;PV4=0.47,4.2e-11,1,0.19 GT:PL:GQ 0/1:160,0,255:99 chr3 195954069 . ACGTCACTTC ACGTCACTTCCGTCACTTC 173 . INDEL;DP=50;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,16,7,6;MQ=52;FQ=176;PV4=0.29,1,1.5e-12,0.34 GT:PL:GQ 0/1:211,0,255:99 chr3 195954299 . G A 41 . DP=15;VDB=0.0019;AF1=0.5;AC1=1;DP4=6,1,6,2;MQ=58;FQ=44;PV4=1,1.2e-06,0.18,0.34 GT:PL:GQ 0/1:71,0,147:74 chr3 195955762 . G A 225 . DP=43;VDB=0.0373;AF1=0.5;AC1=1;DP4=15,9,8,9;MQ=60;FQ=225;PV4=0.36,1,1,0.39 GT:PL:GQ 0/1:255,0,255:99 chr3 195956827 . T C 77 . DP=26;VDB=0.0343;AF1=0.5;AC1=1;DP4=9,7,5,4;MQ=60;FQ=80;PV4=1,1.1e-06,1,0.099 GT:PL:GQ 0/1:107,0,255:99 chr3 195956970 . C T 21 . DP=18;VDB=0.0164;AF1=0.5;AC1=1;DP4=4,9,1,4;MQ=59;FQ=24;PV4=1,2.7e-08,0.054,1 GT:PL:GQ 0/1:51,0,255:54 chr3 195959924 . T C 8.64 . DP=11;VDB=0.0042;AF1=0.5;AC1=1;DP4=5,1,4,1;MQ=60;FQ=11.3;PV4=1,9.7e-09,1,1 GT:PL:GQ 0/1:38,0,151:40 chr3 195960225 . A G 23 . DP=11;VDB=0.0011;AF1=0.5;AC1=1;DP4=0,4,0,7;MQ=58;FQ=26;PV4=1,1.5e-05,1,0.25 GT:PL:GQ 0/1:53,0,82:56 chr3 195965509 . T C 19.1 . DP=22;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,3,6,1;MQ=60;FQ=22;PV4=1,1.5e-08,1,1 GT:PL:GQ 0/1:49,0,238:52 chr3 195968643 . G A 166 . DP=55;VDB=0.0365;AF1=0.5;AC1=1;DP4=6,12,11,26;MQ=60;FQ=169;PV4=1,3.3e-24,1,0.37 GT:PL:GQ 0/1:196,0,255:99 chr3 196044894 . G C 62 . DP=31;VDB=0.0216;AF1=0.5;AC1=1;DP4=13,1,12,2;MQ=60;FQ=65;PV4=1,1.3e-08,1,1 GT:PL:GQ 0/1:92,0,174:95 chr3 196050834 . C T 225 . DP=47;VDB=0.0400;AF1=0.5;AC1=1;DP4=10,16,8,12;MQ=59;FQ=225;PV4=1,0.21,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 196051087 . GTCTCTCTCTCTCTCTCT GTCTCTCTCTCTCTCT 217 . INDEL;DP=81;VDB=0.0400;AF1=0.5;AC1=1;DP4=30,20,8,6;MQ=60;FQ=217;PV4=1,0.0095,1,0.21 GT:PL:GQ 0/1:255,0,255:99 chr3 196051131 . C T 188 . DP=90;VDB=0.0400;AF1=0.5;AC1=1;DP4=19,18,29,23;MQ=60;FQ=191;PV4=0.83,1.8e-14,1,0.5 GT:PL:GQ 0/1:218,0,255:99 chr3 196054439 . T G 89 . DP=14;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:122,36,0:69 chr3 196054488 . A G 32.5 . DP=4;VDB=0.0007;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:65,12,0:21 chr3 196118621 . A T 6.17 . DP=58;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:37,9,0:10 chr3 196158468 . TCC T 200 . INDEL;DP=12;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-67.5 GT:PL:GQ 1/1:241,33,0:63 chr3 196294104 . C G 188 . DP=91;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,27,56;MQ=60;FQ=-277 GT:PL:GQ 1/1:221,250,0:99 chr3 196386964 . C G 216 . DP=79;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,38,35;MQ=60;FQ=-247 GT:PL:GQ 1/1:249,220,0:99 chr3 196388099 . G C 113 . DP=110;VDB=0.0392;AF1=0.5;AC1=1;DP4=32,22,30,24;MQ=59;FQ=116;PV4=0.85,2.7e-45,0.04,0.28 GT:PL:GQ 0/1:143,0,255:99 chr3 196435331 . cagag cag 217 . INDEL;DP=43;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,9,9,6;MQ=59;FQ=217;PV4=0.75,4.8e-06,0.43,0.43 GT:PL:GQ 0/1:255,0,255:99 chr3 196435534 . T C 225 . DP=35;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,11,5,14;MQ=59;FQ=224;PV4=1,0.028,0.19,0.19 GT:PL:GQ 0/1:255,0,254:99 chr3 196443803 . T C 194 . DP=27;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,14,13;MQ=60;FQ=-108 GT:PL:GQ 1/1:227,81,0:99 chr3 196443826 . A G 55 . DP=22;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,6,2,8;MQ=60;FQ=58;PV4=0.36,9.3e-09,1,1 GT:PL:GQ 0/1:85,0,232:88 chr3 196448103 . C T 203 . DP=32;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,6,13,5;MQ=60;FQ=205;PV4=0.45,0.0031,1,1 GT:PL:GQ 0/1:233,0,237:99 chr3 196453427 . C A 74 . DP=47;VDB=0.0190;AF1=0.5;AC1=1;DP4=21,2,23,1;MQ=60;FQ=77;PV4=0.61,2.6e-24,1,1 GT:PL:GQ 0/1:104,0,240:99 chr3 196453467 . A C 154 . DP=100;VDB=0.0365;AF1=0.5;AC1=1;DP4=37,17,33,11;MQ=60;FQ=157;PV4=0.51,2.5e-32,1,1 GT:PL:GQ 0/1:184,0,255:99 chr3 196453654 . C A 112 . DP=53;VDB=0.0244;AF1=0.5;AC1=1;DP4=5,19,8,21;MQ=60;FQ=115;PV4=0.75,6.7e-26,1,1 GT:PL:GQ 0/1:142,0,255:99 chr3 196455682 . G A 225 . DP=48;VDB=0.0216;AF1=0.5;AC1=1;DP4=2,23,5,15;MQ=60;FQ=210;PV4=0.21,0.17,1,1 GT:PL:GQ 0/1:255,0,237:99 chr3 196460680 . C T 103 . DP=101;VDB=0.0271;AF1=0.5;AC1=1;DP4=34,17,32,14;MQ=60;FQ=106;PV4=0.83,1.1e-43,0.15,1 GT:PL:GQ 0/1:133,0,255:99 chr3 196533671 . G A 87 . DP=13;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,7,0,6;MQ=60;FQ=90;PV4=1,0.29,1,1 GT:PL:GQ 0/1:117,0,136:99 chr3 196534903 . T A 48 . DP=15;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,7,2,5;MQ=60;FQ=51;PV4=0.57,1.5e-06,1,1 GT:PL:GQ 0/1:78,0,162:81 chr3 196541580 . G A 221 . DP=31;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,1,30;MQ=60;FQ=-120 GT:PL:GQ 1/1:254,93,0:99 chr3 196613075 . C T 225 . DP=64;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,18,18,12;MQ=60;FQ=225;PV4=0.32,0.059,0.15,1 GT:PL:GQ 0/1:255,0,255:99 chr3 196627335 . T C 123 . DP=7;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:156,21,0:39 chr3 196627361 . G A 52.1 . DP=6;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:85,18,0:33 chr3 196650187 . C T 23 . DP=45;VDB=0.0399;AF1=0.5;AC1=1;DP4=24,4,7,5;MQ=59;FQ=26;PV4=0.097,9e-16,1,0.14 GT:PL:GQ 0/1:53,0,255:56 chr3 196654536 . G A 45 . DP=11;VDB=0.0053;AF1=0.5;AC1=1;DP4=5,0,6,0;MQ=60;FQ=48;PV4=1,0.00018,1,0.19 GT:PL:GQ 0/1:75,0,114:78 chr3 196657670 . CTTTTTTTTT CTTTTTTTT,CTTTTTTT 31.5 . INDEL;DP=39;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,27,9;MQ=60;FQ=-140 GT:PL:GQ 1/1:72,105,0,68,86,65:99 chr3 196666059 . A G 222 . DP=43;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,29,9;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr3 196666214 . G A 122 . DP=52;VDB=0.0400;AF1=0.5;AC1=1;DP4=2,19,7,23;MQ=60;FQ=125;PV4=0.28,4.3e-25,1,0.44 GT:PL:GQ 0/1:152,0,229:99 chr3 196669488 . C CA 30.5 . INDEL;DP=5;VDB=0.0393;AF1=0.5;AC1=1;DP4=0,2,1,1;MQ=60;FQ=23.1;PV4=1,1,1,1 GT:PL:GQ 0/1:68,0,58:61 chr3 196674749 . C T 122 . DP=32;VDB=0.0393;AF1=0.5;AC1=1;DP4=11,6,9,5;MQ=59;FQ=125;PV4=1,5.7e-06,1,0.31 GT:PL:GQ 0/1:152,0,255:99 chr3 196742290 . T C 169 . DP=48;VDB=0.0380;AF1=0.5;AC1=1;DP4=13,10,13,11;MQ=60;FQ=172;PV4=1,3e-10,1,0.39 GT:PL:GQ 0/1:199,0,255:99 chr3 196742395 . G A 106 . DP=47;VDB=0.0322;AF1=0.5;AC1=1;DP4=12,14,7,14;MQ=60;FQ=109;PV4=0.55,3.2e-09,1,1 GT:PL:GQ 0/1:136,0,255:99 chr3 196743130 . T C 225 . DP=41;VDB=0.0345;AF1=0.5;AC1=1;DP4=13,4,18,5;MQ=59;FQ=214;PV4=1,0.31,1,1 GT:PL:GQ 0/1:255,0,241:99 chr3 196746629 . T C 104 . DP=96;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,38,9,36;MQ=60;FQ=107;PV4=1,4.4e-35,1,1 GT:PL:GQ 0/1:134,0,255:99 chr3 196750016 . A G 107 . DP=21;VDB=0.0190;AF1=0.5;AC1=1;DP4=4,4,2,11;MQ=60;FQ=110;PV4=0.15,1.7e-07,1,1 GT:PL:GQ 0/1:137,0,168:99 chr3 196750841 . C A 37 . DP=19;VDB=0.0284;AF1=0.5;AC1=1;DP4=6,7,1,5;MQ=60;FQ=40;PV4=0.33,0.00071,1,0.18 GT:PL:GQ 0/1:67,0,255:70 chr3 196792163 . C T 129 . DP=42;VDB=0.0393;AF1=0.5;AC1=1;DP4=17,7,11,7;MQ=59;FQ=132;PV4=0.53,3.4e-19,1,0.25 GT:PL:GQ 0/1:159,0,255:99 chr3 196869688 . A G 161 . DP=34;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,10,20;MQ=60;FQ=-117 GT:PL:GQ 1/1:194,90,0:99 chr3 197239266 . C G 38 . DP=29;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,16,1,10;MQ=60;FQ=41;PV4=1,1.8e-17,1,0.053 GT:PL:GQ 0/1:68,0,219:71 chr3 197241286 . G C 97 . DP=47;VDB=0.0322;AF1=0.5;AC1=1;DP4=2,20,4,20;MQ=59;FQ=100;PV4=0.67,1.2e-13,1,0.37 GT:PL:GQ 0/1:127,0,232:99 chr3 197362030 . C T 160 . DP=104;VDB=0.0322;AF1=0.5;AC1=1;DP4=53,18,25,6;MQ=50;FQ=163;PV4=0.62,1,2.7e-15,1 GT:PL:GQ 0/1:190,0,255:99 chr3 197362184 . C T 87 . DP=51;VDB=0.0011;AF1=0.5;AC1=1;DP4=2,32,0,17;MQ=48;FQ=90;PV4=0.55,0.0027,0.0011,1 GT:PL:GQ 0/1:117,0,242:99 chr3 197362187 . C T 21 . DP=47;VDB=0.0008;AF1=0.5;AC1=1;DP4=2,29,0,16;MQ=47;FQ=24;PV4=0.54,5.7e-24,0.0023,1 GT:PL:GQ 0/1:51,0,241:54 chr3 197432063 . T C 225 . DP=89;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,25,21,20;MQ=60;FQ=225;PV4=0.67,0.023,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 197482760 . C G 206 . DP=22;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,9,13;MQ=56;FQ=-93 GT:PL:GQ 1/1:239,66,0:99 chr3 197483279 . A G 202 . DP=68;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,56,10;MQ=60;FQ=-226 GT:PL:GQ 1/1:235,199,0:99 chr3 197495334 . G A 222 . DP=39;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,26,12;MQ=59;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr3 197496984 . A G 113 . DP=23;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,21,1;MQ=60;FQ=-93 GT:PL:GQ 1/1:146,66,0:99 chr3 197500411 . TTT TTTGTT 217 . INDEL;DP=56;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,6,30,8;MQ=59;FQ=67.5;PV4=0.013,1,0.24,1 GT:PL:GQ 0/1:255,0,102:99 chr3 197544201 . A G 8.44 . DP=15;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,0,2;MQ=29;FQ=-33 GT:PL:GQ 1/1:39,6,0:8 chr3 197544211 . gt gTATTTt 90.5 . INDEL;DP=10;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,0,8;MQ=39;FQ=-58.5 GT:PL:GQ 1/1:131,24,0:45 chr3 197557635 . C T 90 . DP=57;VDB=0.0164;AF1=1;AC1=2;DP4=0,0,51,4;MQ=60;FQ=-193 GT:PL:GQ 1/1:123,166,0:99 chr3 197562505 . Ggtgtgtgtgtgtgtgtgggtgtgtgtgtg Ggtgtgtgtgtgtgtgggtgtgtgtgtg 9.93 . INDEL;DP=13;VDB=0.0399;AF1=0.5;AC1=1;DP4=9,1,2,0;MQ=60;FQ=12.7;PV4=1,0.0058,1,1 GT:PL:GQ 0/1:47,0,255:49 chr3 197566254 . T C 87 . DP=15;VDB=0.0345;AF1=0.5;AC1=1;DP4=1,4,4,6;MQ=60;FQ=87.5;PV4=0.6,2.4e-06,1,1 GT:PL:GQ 0/1:117,0,118:99 chr3 197581147 . A G 124 . DP=55;VDB=0.0216;AF1=0.5;AC1=1;DP4=19,8,20,6;MQ=60;FQ=127;PV4=0.76,3.7e-16,1,1 GT:PL:GQ 0/1:154,0,255:99 chr3 197585598 . C T 114 . DP=53;VDB=0.0066;AF1=0.5;AC1=1;DP4=25,8,13,6;MQ=60;FQ=117;PV4=0.75,4e-17,1,0.33 GT:PL:GQ 0/1:144,0,255:99 chr3 197597044 . C T 98 . DP=76;VDB=0.0392;AF1=0.5;AC1=1;DP4=20,24,20,12;MQ=60;FQ=101;PV4=0.17,2.1e-23,0.12,0.14 GT:PL:GQ 0/1:128,0,255:99 chr3 197616627 . T G 65 . DP=43;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,19,0,23;MQ=60;FQ=68;PV4=0.47,5.4e-25,1,0.38 GT:PL:GQ 0/1:95,0,214:98 chr3 197659160 . C G 150 . DP=123;VDB=0.0365;AF1=0.5;AC1=1;DP4=11,55,14,43;MQ=60;FQ=153;PV4=0.37,1.3e-40,1,1 GT:PL:GQ 0/1:180,0,255:99 chr3 197665599 . G T 110 . DP=92;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,44,3,35;MQ=59;FQ=113;PV4=0.34,5.3e-19,1,1 GT:PL:GQ 0/1:140,0,255:99 chr3 197687433 . GA GAA 79.5 . INDEL;DP=9;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,4,1,3;MQ=60;FQ=50.5;PV4=1,1,1,0.11 GT:PL:GQ 0/1:117,0,85:88 chr3 197701913 . G T 21 . DP=26;VDB=0.0305;AF1=0.5;AC1=1;DP4=3,11,5,4;MQ=59;FQ=24;PV4=0.18,3.5e-14,1,0.27 GT:PL:GQ 0/1:51,0,243:54 chr3 197712759 . T C 225 . DP=51;VDB=0.0322;AF1=0.5;AC1=1;DP4=7,15,9,20;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr3 197717643 . AT ATATTT 159 . INDEL;DP=32;VDB=0.0053;AF1=0.5;AC1=1;DP4=0,14,0,14;MQ=53;FQ=162;PV4=1,1,0.00074,1 GT:PL:GQ 0/1:197,0,255:99 chr3 197762623 . G A 40 . DP=5;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:72,9,0:16 chr3 197765432 . C T 138 . DP=52;VDB=0.0392;AF1=0.5;AC1=1;DP4=16,9,22,5;MQ=60;FQ=141;PV4=0.21,3.6e-15,1,0.37 GT:PL:GQ 0/1:168,0,255:99 chr4 53428 . G A 222 . DP=47;VDB=0.0008;AF1=1;AC1=2;DP4=0,3,6,38;MQ=60;FQ=-67;PV4=1,0.21,0.4,1 GT:PL:GQ 1/1:255,40,0:77 chr4 60303 . G A 225 . DP=94;VDB=0.0365;AF1=0.5;AC1=1;DP4=34,29,16,15;MQ=60;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr4 60335 . A T 225 . DP=84;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,6,23,42;MQ=60;FQ=125;PV4=0.09,0.41,0.32,0.35 GT:PL:GQ 0/1:255,0,152:99 chr4 60400 . G A 144 . DP=44;VDB=0.0393;AF1=0.5;AC1=1;DP4=6,24,2,11;MQ=60;FQ=147;PV4=1,0.4,1,1 GT:PL:GQ 0/1:174,0,255:99 chr4 67846 . C A 3.54 . DP=46;VDB=0.0099;AF1=0.4998;AC1=1;DP4=0,36,0,9;MQ=60;FQ=5.47;PV4=1,2.8e-17,1,0.43 GT:PL:GQ 0/1:31,0,169:30 chr4 67857 . C A 14.2 . DP=38;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,28,0,9;MQ=60;FQ=17.1;PV4=1,4.1e-10,1,0.44 GT:PL:GQ 0/1:44,0,168:47 chr4 85995 . CAA CAAA 195 . INDEL;DP=29;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,7,8;MQ=44;FQ=-79.5 GT:PL:GQ 1/1:236,45,0:87 chr4 86040 . G T 12 . DP=8;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,1,1;MQ=29;FQ=-33 GT:PL:GQ 1/1:43,6,0:9 chr4 86042 . A G 11.1 . DP=8;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,1,1;MQ=29;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr4 86044 . G A 13.9 . DP=8;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,1,1;MQ=29;FQ=-33 GT:PL:GQ 1/1:45,6,0:10 chr4 86101 . GC GCC 78.7 . INDEL;DP=5;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,1,4;MQ=29;FQ=-49.5 GT:PL:GQ 1/1:119,15,0:27 chr4 86738 . A G 194 . DP=41;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,21,19;MQ=59;FQ=-147 GT:PL:GQ 1/1:227,120,0:99 chr4 87277 . G C 222 . DP=148;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,89,53;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr4 87313 . GA GAA 214 . INDEL;DP=175;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,75,99;MQ=60;FQ=-290 GT:PL:GQ 1/1:255,255,0:99 chr4 135694 . G A 45.3 . DP=5;VDB=0.0019;AF1=1;AC1=2;DP4=0,0,5,0;MQ=60;FQ=-42 GT:PL:GQ 1/1:78,15,0:27 chr4 331693 . GC GCC 214 . INDEL;DP=39;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,24,15;MQ=59;FQ=-152 GT:PL:GQ 1/1:255,117,0:99 chr4 500631 . A G 222 . DP=42;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,20,18;MQ=60;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr4 648542 . ctgtgtgtgtgtgtgtg ctgtgtgtgtgtgtg 76.5 . INDEL;DP=38;VDB=0.0322;AF1=0.5;AC1=1;DP4=25,4,5,1;MQ=59;FQ=79.5;PV4=1,0.078,1,0.21 GT:PL:GQ 0/1:114,0,255:99 chr4 648643 . G A 222 . DP=52;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,13,39;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr4 663908 . A G 222 . DP=43;VDB=0.0216;AF1=1;AC1=2;DP4=0,1,25,17;MQ=59;FQ=-127;PV4=0.42,0.16,1,0.32 GT:PL:GQ 1/1:255,100,0:99 chr4 673872 . T C 79 . DP=38;VDB=0.0400;AF1=0.5;AC1=1;DP4=4,13,2,16;MQ=60;FQ=82;PV4=0.4,9e-15,1,0.089 GT:PL:GQ 0/1:109,0,255:99 chr4 755072 . C T 225 . DP=88;VDB=0.0365;AF1=0.5;AC1=1;DP4=27,3,46,8;MQ=60;FQ=163;PV4=0.74,0.096,1,0.45 GT:PL:GQ 0/1:255,0,190:99 chr4 755129 . C T 161 . DP=127;VDB=0.0298;AF1=0.5;AC1=1;DP4=33,40,27,20;MQ=60;FQ=164;PV4=0.26,1.3e-31,0.038,1 GT:PL:GQ 0/1:191,0,255:99 chr4 759709 . A G 103 . DP=10;VDB=0.0014;AF1=0.5;AC1=1;DP4=4,0,6,0;MQ=55;FQ=37;PV4=1,1,1,1 GT:PL:GQ 0/1:133,0,64:67 chr4 759733 . T C 117 . DP=21;VDB=0.0164;AF1=0.5;AC1=1;DP4=10,1,9,0;MQ=58;FQ=120;PV4=1,1,1,1 GT:PL:GQ 0/1:147,0,170:99 chr4 780286 . C G 47 . DP=13;VDB=0.0042;AF1=0.5;AC1=1;DP4=4,1,6,1;MQ=60;FQ=50;PV4=1,1.8e-06,1,1 GT:PL:GQ 0/1:77,0,116:80 chr4 818440 . G A 158 . DP=93;VDB=0.0400;AF1=0.5;AC1=1;DP4=25,27,15,22;MQ=59;FQ=161;PV4=0.52,3.5e-26,1,1 GT:PL:GQ 0/1:188,0,255:99 chr4 843674 . G A 153 . DP=18;VDB=0.0164;AF1=0.5;AC1=1;DP4=4,4,7,2;MQ=57;FQ=142;PV4=0.33,1,1,1 GT:PL:GQ 0/1:183,0,169:99 chr4 843695 . A G 181 . DP=22;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,15,5;MQ=59;FQ=-87 GT:PL:GQ 1/1:214,60,0:99 chr4 844781 . G A 115 . DP=20;VDB=0.0164;AF1=0.5;AC1=1;DP4=4,3,4,8;MQ=60;FQ=116;PV4=0.38,1.7e-07,1,1 GT:PL:GQ 0/1:145,0,147:99 chr4 845772 . T C 174 . DP=8;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,2,6;MQ=60;FQ=-51 GT:PL:GQ 1/1:207,24,0:45 chr4 858874 . TC TCC 214 . INDEL;DP=31;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,15,15;MQ=58;FQ=-125 GT:PL:GQ 1/1:255,90,0:99 chr4 858941 . T C 222 . DP=18;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,5,10;MQ=60;FQ=-72 GT:PL:GQ 1/1:255,45,0:87 chr4 860146 . A G 222 . DP=26;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,21,4;MQ=59;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr4 860192 . A G 222 . DP=39;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,26,10;MQ=60;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr4 871624 . C T 222 . DP=32;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,3,27;MQ=59;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr4 871675 . A G 56 . DP=10;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,9;MQ=57;FQ=-54 GT:PL:GQ 1/1:89,27,0:51 chr4 875887 . G A 18.1 . DP=14;VDB=0.0118;AF1=0.5;AC1=1;DP4=3,4,0,7;MQ=60;FQ=21;PV4=0.19,6.1e-08,1,1 GT:PL:GQ 0/1:48,0,166:51 chr4 882625 . T G 190 . DP=45;VDB=0.0345;AF1=0.5;AC1=1;DP4=16,11,11,4;MQ=60;FQ=193;PV4=0.51,1,1,1 GT:PL:GQ 0/1:220,0,255:99 chr4 882643 . G A 143 . DP=49;VDB=0.0399;AF1=0.5;AC1=1;DP4=14,14,14,7;MQ=60;FQ=146;PV4=0.38,2e-12,1,0.27 GT:PL:GQ 0/1:173,0,255:99 chr4 887868 . A C 49 . DP=6;VDB=0.0020;AF1=0.5;AC1=1;DP4=0,3,0,3;MQ=60;FQ=50.6;PV4=1,0.0081,1,1 GT:PL:GQ 0/1:79,0,83:81 chr4 906647 . A G 222 . DP=72;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,19,51;MQ=60;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr4 942006 . G A 156 . DP=44;VDB=0.0398;AF1=0.5;AC1=1;DP4=6,15,7,15;MQ=59;FQ=159;PV4=1,1.8e-06,1,0.35 GT:PL:GQ 0/1:186,0,255:99 chr4 944210 . A C 143 . DP=54;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,16,12,12;MQ=60;FQ=146;PV4=1,2.2e-15,1,1 GT:PL:GQ 0/1:173,0,255:99 chr4 946226 . T C 23 . DP=9;VDB=0.0329;AF1=0.5;AC1=1;DP4=2,3,0,4;MQ=55;FQ=26;PV4=0.44,0.00048,0.44,0.1 GT:PL:GQ 0/1:53,0,123:56 chr4 946974 . G A 225 . DP=77;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,9,33,14;MQ=60;FQ=225;PV4=0.79,0.17,1,0.31 GT:PL:GQ 0/1:255,0,255:99 chr4 951947 . T C 225 . DP=52;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,11,12,19;MQ=60;FQ=225;PV4=0.77,0.42,1,0.24 GT:PL:GQ 0/1:255,0,255:99 chr4 954275 . T C 9.31 . DP=2;VDB=0.0188;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:40,6,0:8 chr4 954277 . T C 20.8 . DP=3;VDB=0.0116;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:52,6,0:10 chr4 954311 . C T 47 . DP=11;VDB=0.0025;AF1=0.5;AC1=1;DP4=4,2,4,1;MQ=60;FQ=50;PV4=1,0.00011,1,0.021 GT:PL:GQ 0/1:77,0,150:80 chr4 960081 . G A 196 . DP=61;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,7,52;MQ=60;FQ=-205 GT:PL:GQ 1/1:229,178,0:99 chr4 960331 . C G 130 . DP=23;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,3,9,7;MQ=60;FQ=115;PV4=1,2e-08,1,1 GT:PL:GQ 0/1:160,0,142:99 chr4 961373 . G A 164 . DP=42;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,9,12,8;MQ=60;FQ=167;PV4=1,2.2e-10,1,1 GT:PL:GQ 0/1:194,0,255:99 chr4 980464 . A G 12.3 . DP=17;VDB=0.0011;AF1=0.5;AC1=1;DP4=10,0,7,0;MQ=60;FQ=15.1;PV4=1,4.6e-07,1,1 GT:PL:GQ 0/1:42,0,150:44 chr4 982852 . G A 175 . DP=46;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,10,10,14;MQ=60;FQ=178;PV4=0.76,1.8e-08,1,0.43 GT:PL:GQ 0/1:205,0,255:99 chr4 983060 . T C 222 . DP=76;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,45,27;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr4 983809 . C T 225 . DP=43;VDB=0.0392;AF1=0.5;AC1=1;DP4=17,8,8,9;MQ=59;FQ=225;PV4=0.21,0.35,1,1 GT:PL:GQ 0/1:255,0,255:99 chr4 985727 . A G 175 . DP=59;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,26,28;MQ=60;FQ=-190 GT:PL:GQ 1/1:208,163,0:99 chr4 995868 . C T 225 . DP=63;VDB=0.0345;AF1=0.5;AC1=1;DP4=19,14,17,10;MQ=60;FQ=225;PV4=0.79,0.23,1,1 GT:PL:GQ 0/1:255,0,255:99 chr4 997488 . G T 57 . DP=34;VDB=0.0140;AF1=0.5;AC1=1;DP4=3,15,0,13;MQ=60;FQ=60;PV4=0.25,5e-10,1,0.25 GT:PL:GQ 0/1:87,0,240:90 chr4 1006333 . G A 82 . DP=26;VDB=0.0322;AF1=0.5;AC1=1;DP4=3,13,2,7;MQ=60;FQ=85;PV4=1,0.019,1,0.36 GT:PL:GQ 0/1:112,0,224:99 chr4 1018499 . G A 88 . DP=21;VDB=0.0014;AF1=0.5;AC1=1;DP4=0,7,0,12;MQ=59;FQ=88.9;PV4=1,2.7e-05,1,1 GT:PL:GQ 0/1:118,0,120:99 chr4 1018705 . C A 6.2 . DP=6;VDB=0.0301;AF1=0.4999;AC1=1;DP4=2,0,3,0;MQ=60;FQ=8.6;PV4=1,0.00077,1,1 GT:PL:GQ 0/1:35,0,54:36 chr4 1019011 . C T 71 . DP=28;VDB=0.0365;AF1=0.5;AC1=1;DP4=7,10,5,6;MQ=59;FQ=74;PV4=1,2.1e-12,0.11,1 GT:PL:GQ 0/1:101,0,255:99 chr4 1019054 . ccacacacacacacacacacac ccacacacacacacacacac 86.5 . INDEL;DP=37;VDB=0.0398;AF1=0.5;AC1=1;DP4=13,11,4,2;MQ=58;FQ=89.5;PV4=0.67,1,1,0.44 GT:PL:GQ 0/1:124,0,255:99 chr4 1050653 . G A 126 . DP=23;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,18,3;MQ=59;FQ=-90 GT:PL:GQ 1/1:159,63,0:99 chr4 1050849 . G A 57.1 . DP=17;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:90,21,0:39 chr4 1050850 . T C 64.1 . DP=17;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,1,6;MQ=60;FQ=-48 GT:PL:GQ 1/1:97,21,0:39 chr4 1050909 . A T 37 . DP=3;VDB=0.0098;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:69,9,0:16 chr4 1052078 . A T 139 . DP=14;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,12,0;MQ=58;FQ=-63 GT:PL:GQ 1/1:172,36,0:69 chr4 1052125 . T C 219 . DP=18;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,15,2;MQ=59;FQ=-78 GT:PL:GQ 1/1:252,51,0:99 chr4 1052166 . A C 183 . DP=26;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,10,11;MQ=59;FQ=-90 GT:PL:GQ 1/1:216,63,0:99 chr4 1052206 . T C 222 . DP=30;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,7,21;MQ=59;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr4 1052212 . G A 222 . DP=28;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,7,21;MQ=59;FQ=-111 GT:PL:GQ 1/1:255,84,0:99 chr4 1052355 . C T 84.5 . DP=4;VDB=0.0011;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:117,12,0:21 chr4 1067638 . T G 32 . DP=9;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,9;MQ=60;FQ=-54 GT:PL:GQ 1/1:65,27,0:50 chr4 1075271 . C T 225 . DP=71;VDB=0.0345;AF1=0.5;AC1=1;DP4=30,11,23,7;MQ=60;FQ=225;PV4=0.79,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr4 1084723 . G C 79.5 . DP=4;VDB=0.0199;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:112,12,0:21 chr4 1087168 . AAT AATAT 214 . INDEL;DP=18;VDB=0.0099;AF1=1;AC1=2;DP4=0,0,16,2;MQ=47;FQ=-88.5 GT:PL:GQ 1/1:255,54,0:99 chr4 1087265 . T C 222 . DP=38;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,23,15;MQ=42;FQ=-141 GT:PL:GQ 1/1:255,114,0:99 chr4 1087327 . G GCTGCCCAGGCTGGAGCCAGCC 211 . INDEL;DP=31;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,6,10;MQ=28;FQ=-82.5 GT:PL:GQ 1/1:252,48,0:93 chr4 1087338 . C T 180 . DP=25;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,9,15;MQ=32;FQ=-99 GT:PL:GQ 1/1:213,72,0:99 chr4 1087401 . G A 113 . DP=37;VDB=0.0081;AF1=0.5;AC1=1;DP4=6,9,11,8;MQ=49;FQ=116;PV4=0.49,2.7e-14,1,1 GT:PL:GQ 0/1:143,0,215:99 chr4 1090625 . G A 222 . DP=78;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,25,48;MQ=60;FQ=-247 GT:PL:GQ 1/1:255,220,0:99 chr4 1102050 . C T 222 . DP=21;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,12,8;MQ=60;FQ=-87 GT:PL:GQ 1/1:255,60,0:99 chr4 1164277 . C G 104 . DP=37;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,7,18,2;MQ=59;FQ=107;PV4=0.049,1.6e-05,1,1 GT:PL:GQ 0/1:134,0,243:99 chr4 1164508 . C T 183 . DP=99;VDB=0.0365;AF1=0.5;AC1=1;DP4=22,26,24,25;MQ=60;FQ=186;PV4=0.84,3.3e-19,1,0.42 GT:PL:GQ 0/1:213,0,255:99 chr4 1164552 . A G 222 . DP=78;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,20,52;MQ=60;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr4 1165130 . G T 130 . DP=18;VDB=0.0393;AF1=0.5;AC1=1;DP4=4,3,6,2;MQ=60;FQ=122;PV4=0.61,1,1,1 GT:PL:GQ 0/1:160,0,149:99 chr4 1165587 . C G 45 . DP=19;VDB=0.0140;AF1=0.5;AC1=1;DP4=5,1,13,0;MQ=60;FQ=48;PV4=0.32,7.5e-08,1,0.25 GT:PL:GQ 0/1:75,0,100:78 chr4 1165741 . A G 175 . DP=36;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,10,25;MQ=60;FQ=-132 GT:PL:GQ 1/1:208,105,0:99 chr4 1165764 . C T 39 . DP=28;VDB=0.0359;AF1=0.5;AC1=1;DP4=6,12,1,6;MQ=60;FQ=42;PV4=0.63,5.6e-06,1,0.38 GT:PL:GQ 0/1:69,0,255:72 chr4 1194586 . T A 225 . DP=89;VDB=0.0380;AF1=0.5;AC1=1;DP4=25,12,37,14;MQ=60;FQ=225;PV4=0.64,0.16,1,1 GT:PL:GQ 0/1:255,0,255:99 chr4 1219385 . C T 12.3 . DP=9;VDB=0.0042;AF1=0.5;AC1=1;DP4=2,1,1,2;MQ=60;FQ=15.1;PV4=1,0.011,1,0.059 GT:PL:GQ 0/1:42,0,76:44 chr4 1243404 . C T 72.1 . DP=6;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-45 GT:PL:GQ 1/1:105,18,0:33 chr4 1243573 . T C 88 . DP=9;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,4,5;MQ=57;FQ=-54 GT:PL:GQ 1/1:121,27,0:51 chr4 1244416 . A G 202 . DP=44;VDB=0.0322;AF1=1;AC1=2;DP4=1,0,30,12;MQ=59;FQ=-127;PV4=1,1.4e-05,1,1 GT:PL:GQ 1/1:235,100,0:99 chr4 1346903 . G A 171 . DP=107;VDB=0.0345;AF1=0.5;AC1=1;DP4=24,29,24,26;MQ=60;FQ=174;PV4=0.84,1.4e-35,0.072,0.48 GT:PL:GQ 0/1:201,0,255:99 chr4 1619865 . T C 222 . DP=33;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,6,24;MQ=59;FQ=-117 GT:PL:GQ 1/1:255,90,0:99 chr4 1642963 . C G 63 . DP=12;VDB=0.0003;AF1=0.5;AC1=1;DP4=7,0,5,0;MQ=60;FQ=66;PV4=1,0.15,1,1 GT:PL:GQ 0/1:93,0,137:96 chr4 1646017 . C G 186 . DP=66;VDB=0.0393;AF1=0.5;AC1=1;DP4=10,23,9,22;MQ=60;FQ=189;PV4=1,5.3e-06,1,1 GT:PL:GQ 0/1:216,0,255:99 chr4 1656801 . A C 129 . DP=20;VDB=0.0359;AF1=0.5;AC1=1;DP4=0,8,5,7;MQ=60;FQ=106;PV4=0.055,1.1e-07,1,0.26 GT:PL:GQ 0/1:159,0,133:99 chr4 1657281 . G A 168 . DP=44;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,11,9,14;MQ=59;FQ=171;PV4=0.76,1.7e-09,1,1 GT:PL:GQ 0/1:198,0,255:99 chr4 1659128 . T C 222 . DP=28;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,20,4;MQ=60;FQ=-99 GT:PL:GQ 1/1:255,72,0:99 chr4 1698183 . C T 16.1 . DP=9;VDB=0.0143;AF1=0.5;AC1=1;DP4=0,7,0,2;MQ=60;FQ=19.1;PV4=1,1,1,1 GT:PL:GQ 0/1:46,0,145:49 chr4 1719294 . T C 99 . DP=32;VDB=0.0399;AF1=0.5;AC1=1;DP4=11,11,3,4;MQ=60;FQ=102;PV4=1,1,1,1 GT:PL:GQ 0/1:129,0,255:99 chr4 1719508 . G A 40 . DP=12;VDB=0.0066;AF1=0.5;AC1=1;DP4=0,5,1,5;MQ=60;FQ=43;PV4=1,0.0004,1,1 GT:PL:GQ 0/1:70,0,106:73 chr4 1720346 . A G 3.54 . DP=5;VDB=0.0059;AF1=0.4998;AC1=1;DP4=0,3,0,2;MQ=60;FQ=5.47;PV4=1,0.13,1,1 GT:PL:GQ 0/1:31,0,79:30 chr4 1720824 . A G 44 . DP=30;VDB=0.0118;AF1=0.5;AC1=1;DP4=18,2,8,2;MQ=60;FQ=47;PV4=0.58,9.2e-10,1,0.41 GT:PL:GQ 0/1:74,0,238:77 chr4 1725651 . T C 45 . DP=20;VDB=0.0014;AF1=0.5;AC1=1;DP4=1,10,0,9;MQ=60;FQ=48;PV4=1,1.9e-05,1,1 GT:PL:GQ 0/1:75,0,177:78 chr4 1729425 . C G 225 . DP=80;VDB=0.0322;AF1=0.5;AC1=1;DP4=30,26,14,9;MQ=60;FQ=225;PV4=0.62,1,1,0.41 GT:PL:GQ 0/1:255,0,255:99 chr4 1729660 . C T 121 . DP=52;VDB=0.0365;AF1=0.5;AC1=1;DP4=10,10,25,6;MQ=57;FQ=124;PV4=0.031,1.2e-14,0.12,1 GT:PL:GQ 0/1:151,0,255:99 chr4 1729953 . G A 225 . DP=69;VDB=0.0399;AF1=0.5;AC1=1;DP4=15,13,15,24;MQ=60;FQ=225;PV4=0.32,0.013,1,0.047 GT:PL:GQ 0/1:255,0,255:99 chr4 1729988 . G A 174 . DP=60;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,13,15,17;MQ=60;FQ=177;PV4=0.8,7.2e-18,1,1 GT:PL:GQ 0/1:204,0,255:99 chr4 1730299 . A G 132 . DP=58;VDB=0.0345;AF1=0.5;AC1=1;DP4=17,15,15,10;MQ=60;FQ=135;PV4=0.79,1.3e-21,1,0.48 GT:PL:GQ 0/1:162,0,255:99 chr4 1732410 . C T 116 . DP=44;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,14,3,8;MQ=59;FQ=119;PV4=0.17,0.43,1,1 GT:PL:GQ 0/1:146,0,255:99 chr4 1732573 . GGGGTGGG GGGG 217 . INDEL;DP=23;VDB=0.0271;AF1=0.5;AC1=1;DP4=9,4,8,2;MQ=53;FQ=217;PV4=0.66,0.0055,0.04,0.36 GT:PL:GQ 0/1:255,0,255:99 chr4 1732734 . G A 225 . DP=50;VDB=0.0359;AF1=0.5;AC1=1;DP4=8,12,20,9;MQ=59;FQ=225;PV4=0.077,0.0073,1,0.25 GT:PL:GQ 0/1:255,0,255:99 chr4 1732978 . G A 66 . DP=42;VDB=0.0298;AF1=0.5;AC1=1;DP4=3,13,2,21;MQ=59;FQ=69;PV4=0.63,1.8e-10,1,1 GT:PL:GQ 0/1:96,0,207:99 chr4 1737062 . A G 113 . DP=54;VDB=0.0298;AF1=0.5;AC1=1;DP4=13,19,8,14;MQ=59;FQ=116;PV4=0.78,1.7e-15,0.043,1 GT:PL:GQ 0/1:143,0,255:99 chr4 1737109 . G A 82 . DP=28;VDB=0.0164;AF1=0.5;AC1=1;DP4=2,15,3,8;MQ=59;FQ=85;PV4=0.35,1.1e-08,0.11,0.14 GT:PL:GQ 0/1:112,0,220:99 chr4 1737404 . C CCT 217 . INDEL;DP=37;VDB=0.0322;AF1=0.5;AC1=1;DP4=13,6,13,4;MQ=60;FQ=217;PV4=0.72,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr4 1737585 . T C 110 . DP=13;VDB=0.0053;AF1=0.5;AC1=1;DP4=1,6,1,5;MQ=58;FQ=112;PV4=1,1,1,1 GT:PL:GQ 0/1:140,0,147:99 chr4 1739592 . A G 225 . DP=49;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,18,6,18;MQ=59;FQ=225;PV4=1,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr4 1741325 . A G 30 . DP=5;VDB=0.0225;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=28.9;PV4=1,1,1,1 GT:PL:GQ 0/1:60,0,58:59 chr4 1741534 . C T 61 . DP=30;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,1,20,1;MQ=58;FQ=64;PV4=0.48,3.2e-11,0.14,0.16 GT:PL:GQ 0/1:91,0,127:94 chr4 1741740 . G A 157 . DP=137;VDB=0.0380;AF1=0.5;AC1=1;DP4=23,36,29,46;MQ=59;FQ=160;PV4=1,4.8e-42,1,0.33 GT:PL:GQ 0/1:187,0,255:99 chr4 1805593 . G C 55 . DP=13;VDB=0.0164;AF1=0.5;AC1=1;DP4=0,4,1,8;MQ=60;FQ=45.7;PV4=1,2.4e-05,1,0.46 GT:PL:GQ 0/1:85,0,73:76 chr4 1806519 . C T 122 . DP=10;VDB=0.0380;AF1=0.5;AC1=1;DP4=2,1,4,2;MQ=60;FQ=52;PV4=1,0.34,1,0.037 GT:PL:GQ 0/1:152,0,79:82 chr4 1807894 . G A 222 . DP=63;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,36,24;MQ=60;FQ=-208 GT:PL:GQ 1/1:255,181,0:99 chr4 1809025 . A G 94 . DP=34;VDB=0.0392;AF1=0.5;AC1=1;DP4=3,16,2,12;MQ=60;FQ=97;PV4=1,9.2e-12,1,0.16 GT:PL:GQ 0/1:124,0,246:99 chr4 1809127 . cgtgtgtgtgtgtgtgtgtg cgtgtgtgtgtgtgtgtg 209 . INDEL;DP=8;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,5,2;MQ=60;FQ=-55.5 GT:PL:GQ 1/1:249,21,0:39 chr4 1818594 . C T 152 . DP=67;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,16,47;MQ=60;FQ=-217 GT:PL:GQ 1/1:185,190,0:99 chr4 1834447 . G C 112 . DP=26;VDB=0.0244;AF1=0.5;AC1=1;DP4=10,2,11,3;MQ=60;FQ=115;PV4=1,7e-08,1,0.22 GT:PL:GQ 0/1:142,0,204:99 chr4 1954945 . A G 222 . DP=86;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,56,29;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr4 1961137 . G A 222 . DP=36;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,25,7;MQ=59;FQ=-123 GT:PL:GQ 1/1:255,96,0:99 chr4 1986542 . C T 101 . DP=22;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,0,8,1;MQ=60;FQ=104;PV4=0.43,0.0064,1,0.24 GT:PL:GQ 0/1:131,0,164:99 chr4 2044128 . C T 14.9 . DP=2;VDB=0.0078;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-33 GT:PL:GQ 1/1:46,6,0:10 chr4 2158117 . TC T 5.79 . INDEL;DP=38;VDB=0.0140;AF1=0.5;AC1=1;DP4=5,6,4,0;MQ=60;FQ=8.19;PV4=0.1,0.025,1,1 GT:PL:GQ 0/1:42,0,199:43 chr4 2158273 . GGAG GG 214 . INDEL;DP=44;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,10,28;MQ=60;FQ=-149 GT:PL:GQ 1/1:255,114,0:99 chr4 2158408 . C T 87 . DP=21;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,16,3;MQ=60;FQ=-84 GT:PL:GQ 1/1:120,57,0:99 chr4 2240475 . T C 225 . DP=49;VDB=0.0345;AF1=0.5;AC1=1;DP4=8,17,13,10;MQ=60;FQ=225;PV4=0.14,0.23,1,1 GT:PL:GQ 0/1:255,0,255:99 chr4 2275718 . G A 225 . DP=31;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,3,11,6;MQ=60;FQ=198;PV4=0.69,0.022,1,0.49 GT:PL:GQ 0/1:255,0,225:99 chr4 2275835 . G A 137 . DP=67;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,11,18,18;MQ=60;FQ=140;PV4=0.61,5.5e-21,1,1 GT:PL:GQ 0/1:167,0,255:99 chr4 2306053 . A G 153 . DP=36;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,20,15;MQ=59;FQ=-132 GT:PL:GQ 1/1:186,105,0:99 chr4 2306259 . C T 162 . DP=36;VDB=0.0365;AF1=0.5;AC1=1;DP4=9,5,9,9;MQ=59;FQ=165;PV4=0.49,3e-06,0.19,0.17 GT:PL:GQ 0/1:192,0,238:99 chr4 2322039 . GCCCCC GCCCCCC 160 . INDEL;DP=34;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,8,22;MQ=58;FQ=-125 GT:PL:GQ 1/1:201,90,0:99 chr4 2341194 . T C 159 . DP=47;VDB=0.0380;AF1=0.5;AC1=1;DP4=9,14,18,6;MQ=59;FQ=162;PV4=0.019,8.7e-06,0.041,0.45 GT:PL:GQ 0/1:189,0,255:99 chr4 2439670 . A G 118 . DP=13;VDB=0.0011;AF1=0.5;AC1=1;DP4=5,0,8,0;MQ=60;FQ=64;PV4=1,1,1,1 GT:PL:GQ 0/1:148,0,91:94 chr4 2439738 . G A 225 . DP=83;VDB=0.0392;AF1=0.5;AC1=1;DP4=24,12,32,14;MQ=60;FQ=225;PV4=0.81,0.016,1,1 GT:PL:GQ 0/1:255,0,255:99 chr4 2439756 . C CT 217 . INDEL;DP=106;VDB=0.0392;AF1=0.5;AC1=1;DP4=28,21,32,22;MQ=60;FQ=217;PV4=0.84,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr4 2439900 . C A 77 . DP=51;VDB=0.0380;AF1=0.5;AC1=1;DP4=5,22,3,17;MQ=59;FQ=80;PV4=1,6.8e-14,1,0.25 GT:PL:GQ 0/1:107,0,255:99 chr4 2439965 . G C 51 . DP=13;VDB=0.0019;AF1=0.5;AC1=1;DP4=1,4,0,8;MQ=60;FQ=54;PV4=0.38,0.0065,1,0.47 GT:PL:GQ 0/1:81,0,105:84 chr4 2444931 . A G 167 . DP=100;VDB=0.0345;AF1=0.5;AC1=1;DP4=34,20,24,17;MQ=60;FQ=170;PV4=0.68,6e-25,1,0.47 GT:PL:GQ 0/1:197,0,255:99 chr4 2451694 . T C 222 . DP=126;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,78,42;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr4 2452933 . T C 203 . DP=28;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,14,13;MQ=60;FQ=-108 GT:PL:GQ 1/1:236,81,0:99 chr4 2460571 . C T 153 . DP=28;VDB=0.0399;AF1=0.5;AC1=1;DP4=7,10,6,4;MQ=60;FQ=156;PV4=0.44,0.3,1,1 GT:PL:GQ 0/1:183,0,255:99 chr4 2460803 . A G 107 . DP=21;VDB=0.0164;AF1=0.5;AC1=1;DP4=6,0,11,2;MQ=60;FQ=76;PV4=1,4.1e-06,1,1 GT:PL:GQ 0/1:137,0,103:99 chr4 2461888 . A G 222 . DP=57;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,24,33;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr4 2502299 . A ATT 71.2 . INDEL;DP=4;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-40.5 GT:PL:GQ 1/1:110,6,0:10 chr4 2513620 . G A 222 . DP=27;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,12,14;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr4 2721811 . C T 128 . DP=15;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,6,7;MQ=60;FQ=-66 GT:PL:GQ 1/1:161,39,0:75 chr4 2746307 . A C 215 . DP=81;VDB=0.0322;AF1=1;AC1=2;DP4=1,1,25,49;MQ=59;FQ=-197;PV4=1,0.026,0.41,1 GT:PL:GQ 1/1:248,170,0:99 chr4 2822289 . C A 222 . DP=69;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,47,18;MQ=60;FQ=-223 GT:PL:GQ 1/1:255,196,0:99 chr4 2822467 . G T 126 . DP=41;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,1,39;MQ=60;FQ=-147 GT:PL:GQ 1/1:159,120,0:99 chr4 2826218 . C CA 82 . INDEL;DP=4;VDB=0.0017;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-46.5 GT:PL:GQ 1/1:122,12,0:21 chr4 2826400 . T C 222 . DP=84;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,29,52;MQ=60;FQ=-271 GT:PL:GQ 1/1:255,244,0:99 chr4 2828771 . T G 166 . DP=20;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,12,7;MQ=59;FQ=-84 GT:PL:GQ 1/1:199,57,0:99 chr4 2829077 . T C 52.1 . DP=8;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:85,21,0:39 chr4 2831383 . T G 222 . DP=52;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,20,29;MQ=60;FQ=-175 GT:PL:GQ 1/1:255,148,0:99 chr4 2831918 . G A 4.13 . DP=4;VDB=0.0221;AF1=0.5002;AC1=1;DP4=0,1,1,1;MQ=60;FQ=-3.24;PV4=1,0.05,1,1 GT:PL:GQ 0/1:32,0,28:30 chr4 2833966 . G A 196 . DP=57;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,27,26;MQ=60;FQ=-187 GT:PL:GQ 1/1:229,160,0:99 chr4 2901349 . A G 27 . DP=16;VDB=0.0008;AF1=0.5;AC1=1;DP4=0,9,0,7;MQ=60;FQ=30;PV4=1,5.6e-11,1,1 GT:PL:GQ 0/1:57,0,159:60 chr4 2906453 . T G 113 . DP=44;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,6,22,5;MQ=59;FQ=116;PV4=0.29,2.2e-17,1,1 GT:PL:GQ 0/1:143,0,254:99 chr4 2906707 . G T 131 . DP=66;VDB=0.0392;AF1=0.5;AC1=1;DP4=19,16,17,13;MQ=60;FQ=134;PV4=1,2e-12,1,0.27 GT:PL:GQ 0/1:161,0,255:99 chr4 2916762 . C G 225 . DP=51;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,12,13,13;MQ=60;FQ=225;PV4=1,1,0.18,0.38 GT:PL:GQ 0/1:255,0,255:99 chr4 2928125 . C T 49 . DP=28;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,15,0,11;MQ=60;FQ=52;PV4=1,1e-05,1,1 GT:PL:GQ 0/1:79,0,193:82 chr4 2928413 . T C 225 . DP=39;VDB=0.0398;AF1=0.5;AC1=1;DP4=3,15,6,15;MQ=60;FQ=207;PV4=0.46,0.093,1,0.095 GT:PL:GQ 0/1:255,0,234:99 chr4 2933271 . G A 79 . DP=28;VDB=0.0384;AF1=0.5;AC1=1;DP4=6,6,7,9;MQ=60;FQ=82;PV4=1,4.6e-15,1,0.43 GT:PL:GQ 0/1:109,0,237:99 chr4 2934308 . G A 183 . DP=123;VDB=0.0380;AF1=0.5;AC1=1;DP4=26,36,26,27;MQ=60;FQ=186;PV4=0.46,4.7e-15,0.062,1 GT:PL:GQ 0/1:213,0,255:99 chr4 2935251 . T A 136 . DP=70;VDB=0.0392;AF1=0.5;AC1=1;DP4=26,11,22,8;MQ=59;FQ=139;PV4=1,2e-11,1,0.22 GT:PL:GQ 0/1:166,0,255:99 chr4 3029588 . G A 185 . DP=23;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,17,6;MQ=60;FQ=-96 GT:PL:GQ 1/1:218,69,0:99 chr4 3039150 . T C 175 . DP=54;VDB=0.0365;AF1=0.5;AC1=1;DP4=16,22,11,5;MQ=60;FQ=178;PV4=0.13,1,1,1 GT:PL:GQ 0/1:205,0,255:99 chr4 3118116 . T G 6.98 . DP=8;VDB=0.0126;AF1=0.4999;AC1=1;DP4=1,3,0,4;MQ=60;FQ=9.53;PV4=1,9.6e-05,1,0.34 GT:PL:GQ 0/1:36,0,103:37 chr4 3162056 . C T 115 . DP=49;VDB=0.0322;AF1=0.5;AC1=1;DP4=11,11,13,13;MQ=60;FQ=118;PV4=1,6.1e-15,1,1 GT:PL:GQ 0/1:145,0,255:99 chr4 3180021 . T C 45 . DP=23;VDB=0.0271;AF1=0.5;AC1=1;DP4=10,1,8,3;MQ=60;FQ=48;PV4=0.59,4.6e-10,1,0.37 GT:PL:GQ 0/1:75,0,181:78 chr4 3213832 . G A 38 . DP=20;VDB=0.0140;AF1=0.5;AC1=1;DP4=1,11,0,8;MQ=60;FQ=41;PV4=1,3.5e-09,1,1 GT:PL:GQ 0/1:68,0,200:71 chr4 3215835 . T C 187 . DP=46;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,7,14,12;MQ=60;FQ=190;PV4=1,4.4e-12,1,1 GT:PL:GQ 0/1:217,0,255:99 chr4 3216815 . C G 176 . DP=30;VDB=0.0298;AF1=0.5;AC1=1;DP4=12,1,16,1;MQ=60;FQ=162;PV4=1,0.46,1,1 GT:PL:GQ 0/1:206,0,189:99 chr4 3219613 . A C 175 . DP=40;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,4,33;MQ=59;FQ=-138 GT:PL:GQ 1/1:208,111,0:99 chr4 3225371 . A C 6.2 . DP=29;VDB=0.0019;AF1=0.4999;AC1=1;DP4=2,16,0,11;MQ=60;FQ=8.65;PV4=0.51,3e-20,1,0.082 GT:PL:GQ 0/1:35,0,239:36 chr4 3225389 . A G 43 . DP=16;VDB=0.0059;AF1=0.5;AC1=1;DP4=0,12,0,4;MQ=60;FQ=46;PV4=1,0.2,1,0.26 GT:PL:GQ 0/1:73,0,171:76 chr4 3227419 . A G 220 . DP=38;VDB=0.0380;AF1=0.5;AC1=1;DP4=10,9,11,4;MQ=60;FQ=222;PV4=0.3,0.29,1,0.27 GT:PL:GQ 0/1:250,0,255:99 chr4 3234980 . G A 225 . DP=73;VDB=0.0322;AF1=0.5;AC1=1;DP4=20,6,33,12;MQ=60;FQ=225;PV4=0.79,0.082,1,1 GT:PL:GQ 0/1:255,0,255:99 chr4 3235184 . GCC GC 158 . INDEL;DP=22;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,9,2,11;MQ=60;FQ=112;PV4=0.49,5.9e-09,1,1 GT:PL:GQ 0/1:196,0,147:99 chr4 3240159 . C T 171 . DP=33;VDB=0.0216;AF1=0.5;AC1=1;DP4=9,2,20,1;MQ=60;FQ=140;PV4=0.27,1,1,1 GT:PL:GQ 0/1:201,0,167:99 chr4 3240526 . A G 183 . DP=14;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,11,1;MQ=58;FQ=-63 GT:PL:GQ 1/1:216,36,0:69 chr4 3240737 . G A 225 . DP=58;VDB=0.0392;AF1=0.5;AC1=1;DP4=13,18,6,20;MQ=59;FQ=225;PV4=0.17,0.051,1,0.041 GT:PL:GQ 0/1:255,0,255:99 chr4 3255258 . A G 222 . DP=26;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,3,22;MQ=59;FQ=-102 GT:PL:GQ 1/1:255,75,0:99 chr4 3255292 . C T 60.1 . DP=7;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,7;MQ=60;FQ=-48 GT:PL:GQ 1/1:93,21,0:39 chr4 3257593 . C T 201 . DP=13;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,3,9;MQ=60;FQ=-63 GT:PL:GQ 1/1:234,36,0:69 chr4 3263138 . G A 153 . DP=43;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,5,36;MQ=59;FQ=-150 GT:PL:GQ 1/1:186,123,0:99 chr4 3265479 . C T 129 . DP=46;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,43,2;MQ=59;FQ=-162 GT:PL:GQ 1/1:162,135,0:99 chr4 3265710 . C T 183 . DP=50;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,5,42;MQ=60;FQ=-168 GT:PL:GQ 1/1:216,141,0:99 chr4 3417845 . G C 222 . DP=42;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,19,22;MQ=60;FQ=-150 GT:PL:GQ 1/1:255,123,0:99 chr4 3443931 . A G 66 . DP=8;VDB=0.0110;AF1=0.5;AC1=1;DP4=0,4,1,3;MQ=60;FQ=56.7;PV4=1,1,1,1 GT:PL:GQ 0/1:96,0,84:87 chr4 3444503 . G A 171 . DP=55;VDB=0.0380;AF1=0.5;AC1=1;DP4=16,12,12,14;MQ=60;FQ=174;PV4=0.59,2.1e-15,1,1 GT:PL:GQ 0/1:201,0,255:99 chr4 3445745 . C T 180 . DP=29;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,13,14;MQ=60;FQ=-108 GT:PL:GQ 1/1:213,81,0:99 chr4 3446132 . C G 126 . DP=24;VDB=0.0325;AF1=1;AC1=2;DP4=0,0,4,16;MQ=58;FQ=-87 GT:PL:GQ 1/1:159,60,0:99 chr4 3446751 . T C 76 . DP=10;VDB=0.0345;AF1=0.5;AC1=1;DP4=0,3,0,5;MQ=57;FQ=45;PV4=1,0.24,0.24,0.38 GT:PL:GQ 0/1:106,0,72:75 chr4 3446754 . G A 24 . DP=9;VDB=0.0126;AF1=0.5;AC1=1;DP4=0,5,1,3;MQ=57;FQ=27;PV4=0.44,0.00028,1,1 GT:PL:GQ 0/1:54,0,105:57 chr4 3446883 . A G 78 . DP=5;VDB=0.0007;AF1=0.5006;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-3.53;PV4=1,0.25,1,0.19 GT:PL:GQ 0/1:108,0,26:29 chr4 3449652 . G A 188 . DP=21;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,4,5,6;MQ=60;FQ=176;PV4=0.67,0.37,1,1 GT:PL:GQ 0/1:218,0,203:99 chr4 3449781 . G A 36 . DP=7;VDB=0.0161;AF1=0.5;AC1=1;DP4=2,1,0,3;MQ=60;FQ=36;PV4=0.4,1,1,0.13 GT:PL:GQ 0/1:66,0,66:66 chr4 3451109 . G A 133 . DP=65;VDB=0.0384;AF1=0.5;AC1=1;DP4=22,19,12,12;MQ=60;FQ=136;PV4=0.8,5.5e-19,1,0.48 GT:PL:GQ 0/1:163,0,255:99 chr4 3475107 . G A 118 . DP=5;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,3,2;MQ=60;FQ=-42 GT:PL:GQ 1/1:151,15,0:27 chr4 3475122 . G A 127 . DP=6;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-45 GT:PL:GQ 1/1:160,18,0:33 chr4 3475252 . T C 43.5 . DP=4;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:76,12,0:21 chr4 3478000 . A G 117 . DP=7;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:150,18,0:33 chr4 3478013 . G A 139 . DP=11;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,11,0;MQ=60;FQ=-60 GT:PL:GQ 1/1:172,33,0:63 chr4 3478051 . T C 216 . DP=30;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,20,8;MQ=55;FQ=-111 GT:PL:GQ 1/1:249,84,0:99 chr4 3478323 . T C 121 . DP=16;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,4,11;MQ=60;FQ=-72 GT:PL:GQ 1/1:154,45,0:87 chr4 3487099 . A G 25 . DP=5;VDB=0.0171;AF1=0.5;AC1=1;DP4=3,0,2,0;MQ=60;FQ=28;PV4=1,0.47,1,0.31 GT:PL:GQ 0/1:55,0,81:58 chr4 3487151 . A G 165 . DP=26;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,19,6;MQ=60;FQ=-102 GT:PL:GQ 1/1:198,75,0:99 chr4 3487237 . A G 222 . DP=55;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,27,25;MQ=60;FQ=-184 GT:PL:GQ 1/1:255,157,0:99 chr4 3494419 . G A 43 . DP=17;VDB=0.0019;AF1=0.5;AC1=1;DP4=10,0,7,0;MQ=60;FQ=46;PV4=1,2.5e-05,1,1 GT:PL:GQ 0/1:73,0,155:76 chr4 3494449 . ACCCCC ACCCC 21.5 . INDEL;DP=27;VDB=0.0365;AF1=0.5;AC1=1;DP4=12,4,9,1;MQ=60;FQ=24.5;PV4=0.62,0.16,1,1 GT:PL:GQ 0/1:59,0,108:62 chr4 3495283 . C G 3.54 . DP=12;VDB=0.0180;AF1=0.4998;AC1=1;DP4=3,5,0,4;MQ=58;FQ=5.47;PV4=0.49,4.3e-07,1,1 GT:PL:GQ 0/1:31,0,187:30 chr4 3498448 . T C 96 . DP=31;VDB=0.0099;AF1=0.5;AC1=1;DP4=8,7,11,3;MQ=58;FQ=99;PV4=0.25,1.3e-06,0.48,1 GT:PL:GQ 0/1:126,0,241:99 chr4 3498624 . G A 53 . DP=24;VDB=0.0118;AF1=0.5;AC1=1;DP4=2,10,3,9;MQ=56;FQ=56;PV4=1,6.7e-13,1,0.19 GT:PL:GQ 0/1:83,0,205:86 chr4 3501835 . C A 9.53 . DP=7;VDB=0.0011;AF1=0.5008;AC1=1;DP4=1,0,4,0;MQ=60;FQ=-4.22;PV4=1,0.00011,1,0.12 GT:PL:GQ 0/1:39,0,25:29 chr4 3501849 . T C 70 . DP=11;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,10,1;MQ=60;FQ=-60 GT:PL:GQ 1/1:103,33,0:63 chr4 3501873 . T C 175 . DP=18;VDB=0.0140;AF1=0.5;AC1=1;DP4=5,1,10,2;MQ=60;FQ=76;PV4=1,1,1,1 GT:PL:GQ 0/1:205,0,103:99 chr4 3501924 . A G 106 . DP=31;VDB=0.0359;AF1=0.5;AC1=1;DP4=11,5,9,4;MQ=59;FQ=109;PV4=1,2.7e-10,0.14,0.22 GT:PL:GQ 0/1:136,0,255:99 chr4 3501959 . A G 225 . DP=39;VDB=0.0400;AF1=0.5;AC1=1;DP4=9,10,10,9;MQ=59;FQ=225;PV4=1,1,1,0.47 GT:PL:GQ 0/1:255,0,255:99 chr4 3502163 . A G 41.5 . DP=4;VDB=0.0070;AF1=1;AC1=2;DP4=0,0,1,3;MQ=60;FQ=-39 GT:PL:GQ 1/1:74,12,0:21 chr4 3502303 . G C 25 . DP=5;VDB=0.0082;AF1=0.5006;AC1=1;DP4=1,0,3,1;MQ=60;FQ=-3.53;PV4=1,0.0031,1,0.25 GT:PL:GQ 0/1:55,0,26:29 chr4 3514695 . A G 142 . DP=37;VDB=0.0298;AF1=0.5;AC1=1;DP4=11,6,14,6;MQ=59;FQ=145;PV4=1,1.1e-11,0.18,1 GT:PL:GQ 0/1:172,0,255:99 chr4 3514938 . A G 81.3 . DP=5;VDB=0.0014;AF1=1;AC1=2;DP4=0,0,0,5;MQ=55;FQ=-42 GT:PL:GQ 1/1:114,15,0:27 chr4 3516689 . T C 152 . DP=54;VDB=0.0393;AF1=1;AC1=2;DP4=0,0,12,36;MQ=60;FQ=-171 GT:PL:GQ 1/1:185,144,0:99 chr4 3516742 . A G 62 . DP=23;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,1,15;MQ=60;FQ=-75 GT:PL:GQ 1/1:95,48,0:93 chr4 3517732 . G C 225 . DP=50;VDB=0.0322;AF1=0.5;AC1=1;DP4=18,1,23,6;MQ=60;FQ=171;PV4=0.22,0.11,1,0.25 GT:PL:GQ 0/1:255,0,198:99 chr4 3519762 . A G 72 . DP=35;VDB=0.0140;AF1=0.5;AC1=1;DP4=19,0,16,0;MQ=60;FQ=75;PV4=1,1.9e-10,1,0.22 GT:PL:GQ 0/1:102,0,169:99 chr4 3521939 . T A 54 . DP=19;VDB=0.0373;AF1=0.5;AC1=1;DP4=2,9,0,8;MQ=59;FQ=57;PV4=0.49,1.6e-07,1,0.24 GT:PL:GQ 0/1:84,0,204:87 chr4 3589623 . G A 179 . DP=41;VDB=0.0140;AF1=0.5;AC1=1;DP4=18,0,21,1;MQ=58;FQ=148;PV4=1,0.018,1,0.21 GT:PL:GQ 0/1:209,0,175:99 chr4 3589689 . C A 166 . DP=135;VDB=0.0365;AF1=0.5;AC1=1;DP4=57,13,47,17;MQ=56;FQ=169;PV4=0.3,3.4e-43,1,1 GT:PL:GQ 0/1:196,0,255:99 chr4 3589719 . CAA CA 217 . INDEL;DP=180;VDB=0.0365;AF1=0.5;AC1=1;DP4=27,20,80,42;MQ=57;FQ=217;PV4=0.37,6.9e-05,0.0011,0.16 GT:PL:GQ 0/1:255,0,255:99 chr4 3589747 . T C 5.46 . DP=203;VDB=0.0298;AF1=0.4999;AC1=1;DP4=81,71,32,17;MQ=58;FQ=7.8;PV4=0.19,1.4e-39,8.8e-11,1 GT:PL:GQ 0/1:34,0,255:34 chr4 3589846 . T C 102 . DP=159;VDB=0.0380;AF1=0.5;AC1=1;DP4=27,61,16,51;MQ=59;FQ=105;PV4=0.37,2.7e-54,1,1 GT:PL:GQ 0/1:132,0,255:99 chr4 3590588 . A C 12.3 . DP=24;VDB=0.0019;AF1=0.5;AC1=1;DP4=17,0,6,0;MQ=60;FQ=15.1;PV4=1,3.4e-07,1,0.11 GT:PL:GQ 0/1:42,0,171:44 chr4 3590683 . T G 135 . DP=115;VDB=0.0392;AF1=0.5;AC1=1;DP4=43,28,23,19;MQ=58;FQ=138;PV4=0.56,1.1e-26,0.063,0.27 GT:PL:GQ 0/1:165,0,255:99 chr4 3590711 . G T 66 . DP=120;VDB=0.0345;AF1=0.5;AC1=1;DP4=36,38,21,21;MQ=58;FQ=69;PV4=1,1.2e-45,0.0089,0.29 GT:PL:GQ 0/1:96,0,255:99 chr4 3590730 . G A 101 . DP=108;VDB=0.0190;AF1=0.5;AC1=1;DP4=31,40,16,19;MQ=59;FQ=104;PV4=1,2.4e-34,0.036,1 GT:PL:GQ 0/1:131,0,255:99 chr4 3590817 . T C 218 . DP=61;VDB=0.0345;AF1=0.5;AC1=1;DP4=15,14,17,9;MQ=51;FQ=220;PV4=0.41,0.35,2.3e-10,1 GT:PL:GQ 0/1:248,0,255:99 chr4 3590878 . C T 225 . DP=135;VDB=0.0380;AF1=0.5;AC1=1;DP4=59,15,41,13;MQ=55;FQ=225;PV4=0.67,2.5e-06,6.2e-10,1 GT:PL:GQ 0/1:255,0,255:99 chr4 3590911 . A C 225 . DP=180;VDB=0.0244;AF1=0.5;AC1=1;DP4=74,30,49,24;MQ=58;FQ=225;PV4=0.62,1,0.00029,1 GT:PL:GQ 0/1:255,0,255:99 chr4 4199634 . A T 181 . DP=73;VDB=0.0392;AF1=0.5;AC1=1;DP4=12,25,14,21;MQ=60;FQ=184;PV4=0.62,1.4e-24,0.15,0.39 GT:PL:GQ 0/1:211,0,255:99 chr4 4199760 . G A 137 . DP=38;VDB=0.0400;AF1=0.5;AC1=1;DP4=8,7,12,10;MQ=60;FQ=140;PV4=1,2.9e-12,1,0.011 GT:PL:GQ 0/1:167,0,255:99 chr4 4204299 . T C 107 . DP=29;VDB=0.0271;AF1=0.5;AC1=1;DP4=2,6,5,15;MQ=59;FQ=110;PV4=1,2.8e-15,0.19,0.36 GT:PL:GQ 0/1:137,0,159:99 chr4 4228029 . AAAG AAAGAAG 22.5 . INDEL;DP=3;VDB=0.0149;AF1=0.5003;AC1=1;DP4=1,0,2,0;MQ=49;FQ=-6.6;PV4=1,1,0.33,1 GT:PL:GQ 0/1:60,0,29:32 chr4 4238746 . T G 154 . DP=25;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,5,10,1;MQ=51;FQ=157;PV4=0.17,1,1,1 GT:PL:GQ 0/1:184,0,219:99 chr4 4238922 . A G 27.1 . DP=6;VDB=0.0359;AF1=0.508;AC1=1;DP4=0,1,0,5;MQ=57;FQ=-12.3;PV4=1,0.0094,1,1 GT:PL:GQ 0/1:57,0,15:18 chr4 4239516 . C T 109 . DP=27;VDB=0.0190;AF1=0.5;AC1=1;DP4=11,4,8,1;MQ=51;FQ=112;PV4=0.61,0.079,2.1e-10,0.26 GT:PL:GQ 0/1:139,0,255:99 chr4 4239539 . C T 37 . DP=26;VDB=0.0019;AF1=0.5;AC1=1;DP4=13,5,7,1;MQ=52;FQ=40;PV4=0.63,3.1e-07,4.5e-09,0.35 GT:PL:GQ 0/1:67,0,255:70 chr4 4239587 . G T 19.1 . DP=25;VDB=0.0322;AF1=0.5;AC1=1;DP4=10,9,0,6;MQ=51;FQ=22;PV4=0.051,0.00014,3e-07,0.26 GT:PL:GQ 0/1:49,0,255:52 chr4 4249297 . C T 152 . DP=59;VDB=0.0365;AF1=0.5;AC1=1;DP4=25,0,29,4;MQ=60;FQ=149;PV4=0.13,9.6e-16,0.19,0.37 GT:PL:GQ 0/1:182,0,177:99 chr4 4249300 . T C 76 . DP=65;VDB=0.0380;AF1=0.5;AC1=1;DP4=28,1,29,4;MQ=60;FQ=79;PV4=0.36,3e-30,0.18,1 GT:PL:GQ 0/1:106,0,214:99 chr4 4249483 . C T 172 . DP=75;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,4,30;MQ=59;FQ=-129 GT:PL:GQ 1/1:205,102,0:99 chr4 4249855 . G A 83 . DP=15;VDB=0.0399;AF1=0.5;AC1=1;DP4=5,0,8,1;MQ=59;FQ=68.9;PV4=1,4.1e-05,0.24,1 GT:PL:GQ 0/1:113,0,96:99 chr4 4249909 . C T 150 . DP=31;VDB=0.0392;AF1=0.5;AC1=1;DP4=9,3,15,4;MQ=60;FQ=152;PV4=1,2.5e-06,1,1 GT:PL:GQ 0/1:180,0,186:99 chr4 4249974 . C A 225 . DP=40;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,9,10,13;MQ=60;FQ=189;PV4=1,1,0.21,0.071 GT:PL:GQ 0/1:255,0,216:99 chr4 4276132 . T C 222 . DP=128;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,56,65;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr4 4285221 . A C 58 . DP=19;VDB=0.0042;AF1=1;AC1=2;DP4=0,0,19,0;MQ=59;FQ=-84 GT:PL:GQ 1/1:91,57,0:99 chr4 4304337 . C T 222 . DP=64;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,30,29;MQ=60;FQ=-205 GT:PL:GQ 1/1:255,178,0:99 chr4 4422558 . A C 77 . DP=70;VDB=0.0118;AF1=0.5;AC1=1;DP4=31,4,30,3;MQ=59;FQ=80;PV4=1,5.6e-27,1,1 GT:PL:GQ 0/1:107,0,255:99 chr4 4425422 . CAG CAGAG 180 . INDEL;DP=14;VDB=0.0033;AF1=0.5;AC1=1;DP4=1,5,1,7;MQ=58;FQ=146;PV4=1,1,0.2,1 GT:PL:GQ 0/1:218,0,181:99 chr4 5016841 . G T 62.1 . DP=8;VDB=0.0384;AF1=1;AC1=2;DP4=0,0,7,0;MQ=57;FQ=-48 GT:PL:GQ 1/1:95,21,0:39 chr4 5018702 . G A 157 . DP=62;VDB=0.0322;AF1=0.5;AC1=1;DP4=15,15,15,16;MQ=60;FQ=160;PV4=1,2.6e-10,0.16,1 GT:PL:GQ 0/1:187,0,255:99 chr4 5053674 . C T 209 . DP=67;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,17,45;MQ=59;FQ=-214 GT:PL:GQ 1/1:242,187,0:99 chr4 5128650 . T C 121 . DP=17;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,14,2;MQ=60;FQ=-75 GT:PL:GQ 1/1:154,48,0:93 chr4 5170214 . C T 24.3 . DP=5;VDB=0.0002;AF1=1;AC1=2;DP4=0,0,0,5;MQ=60;FQ=-42 GT:PL:GQ 1/1:57,15,0:27 chr4 5418383 . G A 39.1 . DP=7;VDB=0.0004;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:72,18,0:33 chr4 5418539 . C T 222 . DP=95;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,64,28;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr4 5469810 . T C 222 . DP=17;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,5,11;MQ=60;FQ=-75 GT:PL:GQ 1/1:255,48,0:93 chr4 5469916 . G A 82.5 . DP=4;VDB=0.0049;AF1=1;AC1=2;DP4=0,0,0,4;MQ=60;FQ=-39 GT:PL:GQ 1/1:115,12,0:21 chr4 5527008 . C T 27 . DP=5;VDB=0.0184;AF1=0.5;AC1=1;DP4=1,2,2,0;MQ=60;FQ=30;PV4=0.4,1,1,1 GT:PL:GQ 0/1:57,0,90:60 chr4 5527249 . A G 225 . DP=57;VDB=0.0365;AF1=0.5;AC1=1;DP4=14,15,12,16;MQ=60;FQ=225;PV4=0.79,0.46,1,1 GT:PL:GQ 0/1:255,0,255:99 chr4 5528115 . ATTTTTTTTTTTTTTT ATTTTTTTTTTTTT 3.14 . INDEL;DP=28;VDB=0.0393;AF1=0.6242;AC1=1;DP4=2,5,2,8;MQ=60;FQ=-30.5;PV4=1,1,1,0.094 GT:PL:GQ 0/1:37,0,4:11 chr4 5577884 . T C 172 . DP=9;VDB=0.0190;AF1=1;AC1=2;DP4=0,0,6,3;MQ=57;FQ=-54 GT:PL:GQ 1/1:205,27,0:51 chr4 5577986 . G A 173 . DP=72;VDB=0.0400;AF1=0.5;AC1=1;DP4=22,9,25,14;MQ=59;FQ=176;PV4=0.61,5e-27,1,0.25 GT:PL:GQ 0/1:203,0,255:99 chr4 5624704 . A G 139 . DP=22;VDB=0.0345;AF1=0.5;AC1=1;DP4=3,5,0,14;MQ=60;FQ=117;PV4=0.036,1,1,0.011 GT:PL:GQ 0/1:169,0,144:99 chr4 5642161 . A G 11.1 . DP=5;VDB=0.0000;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:42,6,0:9 chr4 5687281 . C T 12.3 . DP=4;VDB=0.0050;AF1=0.5002;AC1=1;DP4=0,1,0,2;MQ=60;FQ=4.6;PV4=1,0.33,1,0.24 GT:PL:GQ 0/1:42,0,30:33 chr4 5696264 . G A 131 . DP=46;VDB=0.0400;AF1=0.5;AC1=1;DP4=7,16,6,16;MQ=59;FQ=134;PV4=1,1.2e-16,1,0.19 GT:PL:GQ 0/1:161,0,255:99 chr4 5721021 . A C 155 . DP=66;VDB=0.0398;AF1=0.5;AC1=1;DP4=7,27,16,13;MQ=60;FQ=158;PV4=0.0081,5.4e-15,1,0.079 GT:PL:GQ 0/1:185,0,255:99 chr4 5743400 . T C 133 . DP=23;VDB=0.0345;AF1=0.5;AC1=1;DP4=5,3,9,6;MQ=60;FQ=136;PV4=1,2.2e-09,1,1 GT:PL:GQ 0/1:163,0,177:99 chr4 5743509 . C T 131 . DP=19;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,15;MQ=60;FQ=-84 GT:PL:GQ 1/1:164,57,0:99 chr4 5743512 . T C 153 . DP=19;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,4,15;MQ=60;FQ=-84 GT:PL:GQ 1/1:186,57,0:99 chr4 5747072 . C T 225 . DP=35;VDB=0.0298;AF1=0.5;AC1=1;DP4=6,10,8,11;MQ=60;FQ=225;PV4=1,0.0015,1,1 GT:PL:GQ 0/1:255,0,255:99 chr4 5747078 . A G 121 . DP=35;VDB=0.0345;AF1=0.5;AC1=1;DP4=7,12,6,10;MQ=60;FQ=124;PV4=1,4.6e-16,1,1 GT:PL:GQ 0/1:151,0,255:99 chr4 5747131 . C A 42 . DP=19;VDB=0.0345;AF1=0.5;AC1=1;DP4=2,10,2,5;MQ=60;FQ=45;PV4=0.6,5.2e-10,1,1 GT:PL:GQ 0/1:72,0,224:75 chr4 5749784 . G A 29 . DP=31;VDB=0.0099;AF1=0.5;AC1=1;DP4=12,0,19,0;MQ=60;FQ=32;PV4=1,1.1e-19,1,0.47 GT:PL:GQ 0/1:59,0,152:62 chr4 5749804 . G A 115 . DP=53;VDB=0.0298;AF1=0.5;AC1=1;DP4=18,1,28,4;MQ=60;FQ=118;PV4=0.64,8.6e-17,0.22,1 GT:PL:GQ 0/1:145,0,182:99 chr4 5749814 . C T 149 . DP=64;VDB=0.0322;AF1=0.5;AC1=1;DP4=23,3,32,6;MQ=60;FQ=152;PV4=0.73,2.9e-24,0.21,1 GT:PL:GQ 0/1:179,0,245:99 chr4 5749904 . T C 225 . DP=138;VDB=0.0365;AF1=0.5;AC1=1;DP4=28,36,29,41;MQ=60;FQ=225;PV4=0.86,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr4 5749961 . G C 225 . DP=92;VDB=0.0345;AF1=0.5;AC1=1;DP4=14,29,8,40;MQ=60;FQ=225;PV4=0.091,0.2,1,0.21 GT:PL:GQ 0/1:255,0,255:99 chr4 5750003 . A G 225 . DP=60;VDB=0.0400;AF1=0.5;AC1=1;DP4=3,25,6,22;MQ=60;FQ=223;PV4=0.47,0.085,1,1 GT:PL:GQ 0/1:255,0,252:99 chr4 5750051 . G A 37 . DP=22;VDB=0.0033;AF1=0.5;AC1=1;DP4=0,10,0,11;MQ=60;FQ=40;PV4=1,2.8e-11,1,0.055 GT:PL:GQ 0/1:67,0,154:70 chr4 5754544 . T C 117 . DP=53;VDB=0.0365;AF1=0.5;AC1=1;DP4=21,5,18,6;MQ=60;FQ=120;PV4=0.74,1.3e-22,1,1 GT:PL:GQ 0/1:147,0,255:99 chr4 5755542 . C A 114 . DP=25;VDB=0.0190;AF1=0.5;AC1=1;DP4=6,8,6,5;MQ=60;FQ=117;PV4=0.7,9.6e-05,1,1 GT:PL:GQ 0/1:144,0,241:99 chr4 5759860 . A G 5.46 . DP=10;VDB=0.0022;AF1=0.4999;AC1=1;DP4=2,4,1,3;MQ=60;FQ=7.8;PV4=1,7.9e-05,1,1 GT:PL:GQ 0/1:34,0,144:34 chr4 5785442 . G A 165 . DP=31;VDB=0.0399;AF1=0.5;AC1=1;DP4=4,6,8,12;MQ=58;FQ=165;PV4=1,2.2e-11,1,0.092 GT:PL:GQ 0/1:195,0,196:99 chr4 5798627 . G A 94 . DP=18;VDB=0.0006;AF1=1;AC1=2;DP4=0,0,17,0;MQ=60;FQ=-78 GT:PL:GQ 1/1:127,51,0:99 chr4 5803904 . C T 148 . DP=14;VDB=0.0398;AF1=1;AC1=2;DP4=0,0,3,10;MQ=60;FQ=-66 GT:PL:GQ 1/1:181,39,0:75 chr4 5806366 . T C 20 . DP=12;VDB=0.0216;AF1=0.5;AC1=1;DP4=6,0,6,0;MQ=60;FQ=23;PV4=1,5.3e-09,1,0.23 GT:PL:GQ 0/1:50,0,129:53 chr4 5812195 . A G 68 . DP=13;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,0,12;MQ=60;FQ=-63 GT:PL:GQ 1/1:101,36,0:69 chr4 5812566 . A G 26 . DP=68;VDB=0.0140;AF1=0.5;AC1=1;DP4=30,6,25,2;MQ=59;FQ=29;PV4=0.45,1.4e-35,0.05,1 GT:PL:GQ 0/1:56,0,255:59 chr4 5812778 . G A 146 . DP=23;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,2,21;MQ=59;FQ=-96 GT:PL:GQ 1/1:179,69,0:99 chr4 5812817 . T C 3.54 . DP=8;VDB=0.0033;AF1=0.4998;AC1=1;DP4=0,4,0,4;MQ=57;FQ=5.47;PV4=1,5.5e-07,1,1 GT:PL:GQ 0/1:31,0,96:30 chr4 5827389 . A G 113 . DP=68;VDB=0.0190;AF1=0.5;AC1=1;DP4=13,26,7,20;MQ=60;FQ=116;PV4=0.59,4.3e-27,1,1 GT:PL:GQ 0/1:143,0,255:99 chr4 5830414 . T C 222 . DP=62;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,9,48;MQ=60;FQ=-199 GT:PL:GQ 1/1:255,172,0:99 chr4 5838513 . C G 193 . DP=77;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,37,38;MQ=60;FQ=-253 GT:PL:GQ 1/1:226,226,0:99 chr4 5841423 . TAA TAAACAA 214 . INDEL;DP=24;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,5,18;MQ=53;FQ=-104 GT:PL:GQ 1/1:255,69,0:99 chr4 5843196 . T G 174 . DP=50;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,16,33;MQ=59;FQ=-175 GT:PL:GQ 1/1:207,148,0:99 chr4 5843266 . T C 218 . DP=23;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,1,20;MQ=59;FQ=-90 GT:PL:GQ 1/1:251,63,0:99 chr4 5843328 . T C 57.1 . DP=6;VDB=0.0008;AF1=1;AC1=2;DP4=0,0,0,6;MQ=56;FQ=-45 GT:PL:GQ 1/1:90,18,0:33 chr4 5863032 . G A 123 . DP=13;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,2,11;MQ=60;FQ=-66 GT:PL:GQ 1/1:156,39,0:75 chr4 5966618 . A G 72 . DP=9;VDB=0.0033;AF1=1;AC1=2;DP4=0,0,9,0;MQ=60;FQ=-54 GT:PL:GQ 1/1:105,27,0:51 chr4 5966665 . G A 148 . DP=20;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,0,6,3;MQ=60;FQ=124;PV4=0.087,0.11,1,1 GT:PL:GQ 0/1:178,0,151:99 chr4 5966801 . T C 225 . DP=55;VDB=0.0298;AF1=0.5;AC1=1;DP4=20,15,10,9;MQ=60;FQ=225;PV4=0.78,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr4 5966905 . C T 96 . DP=41;VDB=0.0399;AF1=0.5;AC1=1;DP4=6,17,4,14;MQ=60;FQ=99;PV4=1,1.6e-17,1,0.32 GT:PL:GQ 0/1:126,0,255:99 chr4 5966943 . T C 26 . DP=18;VDB=0.0322;AF1=0.5;AC1=1;DP4=0,10,2,6;MQ=60;FQ=29;PV4=0.18,3e-10,1,0.16 GT:PL:GQ 0/1:56,0,163:59 chr4 5969113 . G A 218 . DP=30;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,20,10;MQ=60;FQ=-117 GT:PL:GQ 1/1:251,90,0:99 chr4 5969235 . A G 202 . DP=34;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,11,22;MQ=60;FQ=-126 GT:PL:GQ 1/1:235,99,0:99 chr4 5969252 . A G 171 . DP=31;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,9,21;MQ=60;FQ=-117 GT:PL:GQ 1/1:204,90,0:99 chr4 5969292 . C A 72 . DP=17;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,1,14;MQ=60;FQ=-72 GT:PL:GQ 1/1:105,45,0:87 chr4 5969303 . T A 76 . DP=14;VDB=0.0244;AF1=1;AC1=2;DP4=0,0,0,14;MQ=60;FQ=-69 GT:PL:GQ 1/1:109,42,0:81 chr4 5969364 . T C 55 . DP=3;VDB=0.0040;AF1=1;AC1=2;DP4=0,0,0,3;MQ=60;FQ=-36 GT:PL:GQ 1/1:87,9,0:16 chr4 5975378 . G A 184 . DP=106;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,63,39;MQ=60;FQ=-282 GT:PL:GQ 1/1:217,255,0:99 chr4 5977566 . C A 167 . DP=73;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,44,23;MQ=60;FQ=-229 GT:PL:GQ 1/1:200,202,0:99 chr4 5982108 . T C 135 . DP=20;VDB=0.0271;AF1=1;AC1=2;DP4=0,0,5,15;MQ=59;FQ=-87 GT:PL:GQ 1/1:168,60,0:99 chr4 5990110 . C A 180 . DP=146;VDB=0.0365;AF1=1;AC1=2;DP4=1,0,64,73;MQ=60;FQ=-282;PV4=0.47,0.0084,1,0.25 GT:PL:GQ 1/1:213,255,0:99 chr4 5990339 . G A 178 . DP=49;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,27,18;MQ=59;FQ=-162 GT:PL:GQ 1/1:211,135,0:99 chr4 5990551 . G A 152 . DP=72;VDB=0.0398;AF1=0.5;AC1=1;DP4=22,18,16,15;MQ=60;FQ=155;PV4=0.81,1.3e-23,1,0.094 GT:PL:GQ 0/1:182,0,255:99 chr4 5990599 . T C 222 . DP=78;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,46,24;MQ=59;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr4 5990791 . A G 222 . DP=193;VDB=0.0392;AF1=1;AC1=2;DP4=1,2,88,97;MQ=60;FQ=-282;PV4=1,0.0011,0.43,0.37 GT:PL:GQ 1/1:255,255,0:99 chr4 5991084 . T G 125 . DP=52;VDB=0.0399;AF1=0.5;AC1=1;DP4=17,12,18,5;MQ=59;FQ=128;PV4=0.15,1.7e-15,0.055,1 GT:PL:GQ 0/1:155,0,255:99 chr4 5991384 . T C 222 . DP=82;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,38,40;MQ=59;FQ=-262 GT:PL:GQ 1/1:255,235,0:99 chr4 5991476 . G A 222 . DP=38;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,7,30;MQ=59;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr4 6037936 . T G 16.1 . DP=9;VDB=0.0143;AF1=0.5;AC1=1;DP4=1,4,1,2;MQ=60;FQ=19.1;PV4=1,0.011,1,1 GT:PL:GQ 0/1:46,0,123:49 chr4 6062061 . T C 82 . DP=20;VDB=0.0033;AF1=0.5;AC1=1;DP4=13,0,7,0;MQ=60;FQ=85;PV4=1,0.14,1,1 GT:PL:GQ 0/1:112,0,172:99 chr4 6062117 . T A 91 . DP=56;VDB=0.0399;AF1=0.5;AC1=1;DP4=27,8,17,4;MQ=60;FQ=94;PV4=1,7.4e-15,1,1 GT:PL:GQ 0/1:121,0,255:99 chr4 6087371 . G A 136 . DP=32;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,10,21;MQ=60;FQ=-120 GT:PL:GQ 1/1:169,93,0:99 chr4 6279047 . C T 28 . DP=3;VDB=0.0133;AF1=1;AC1=2;DP4=0,0,3,0;MQ=60;FQ=-36 GT:PL:GQ 1/1:60,9,0:16 chr4 6292758 . G A 42.5 . DP=6;VDB=0.0001;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:75,12,0:21 chr4 6292799 . A C 85 . DP=17;VDB=0.0053;AF1=1;AC1=2;DP4=0,0,14,0;MQ=60;FQ=-69 GT:PL:GQ 1/1:118,42,0:81 chr4 6292818 . C G 182 . DP=25;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,24,0;MQ=60;FQ=-99 GT:PL:GQ 1/1:215,72,0:99 chr4 6292909 . C T 222 . DP=73;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,44,26;MQ=58;FQ=-238 GT:PL:GQ 1/1:255,211,0:99 chr4 6292915 . A G 222 . DP=73;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,44,28;MQ=58;FQ=-244 GT:PL:GQ 1/1:255,217,0:99 chr4 6293446 . T C 38.8 . DP=2;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-33 GT:PL:GQ 1/1:70,6,0:10 chr4 6293474 . A G 113 . DP=6;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,4,1;MQ=60;FQ=-42 GT:PL:GQ 1/1:146,15,0:27 chr4 6293696 . C G 192 . DP=21;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,5,15;MQ=59;FQ=-87 GT:PL:GQ 1/1:225,60,0:99 chr4 6302519 . G A 222 . DP=202;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,98,91;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr4 6302707 . C T 222 . DP=190;VDB=0.0399;AF1=1;AC1=2;DP4=1,0,89,95;MQ=60;FQ=-282;PV4=0.49,0.00015,0.47,0.22 GT:PL:GQ 1/1:255,255,0:99 chr4 6303022 . C T 222 . DP=139;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,64,74;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr4 6303354 . G A 222 . DP=111;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,67,41;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr4 6303955 . G A 182 . DP=95;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,41,50;MQ=60;FQ=-282 GT:PL:GQ 1/1:215,255,0:99 chr4 6304087 . A G 222 . DP=107;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,47,57;MQ=59;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr4 6304242 . T C 29.1 . DP=11;VDB=0.0025;AF1=1;AC1=2;DP4=0,0,0,6;MQ=60;FQ=-45 GT:PL:GQ 1/1:62,18,0:33 chr4 6325018 . A T 149 . DP=15;VDB=0.0298;AF1=1;AC1=2;DP4=0,0,12,2;MQ=58;FQ=-69 GT:PL:GQ 1/1:182,42,0:81 chr4 6325086 . G A 220 . DP=62;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,44,12;MQ=58;FQ=-196 GT:PL:GQ 1/1:253,169,0:99 chr4 6335186 . C T 45.5 . DP=4;VDB=0.0180;AF1=1;AC1=2;DP4=0,0,4,0;MQ=60;FQ=-39 GT:PL:GQ 1/1:78,12,0:21 chr4 6335203 . C T 103 . DP=6;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,6,0;MQ=60;FQ=-45 GT:PL:GQ 1/1:136,18,0:33 chr4 6374189 . A G 158 . DP=9;VDB=0.0066;AF1=1;AC1=2;DP4=0,0,8,1;MQ=60;FQ=-54 GT:PL:GQ 1/1:191,27,0:51 chr4 6374214 . C T 106 . DP=25;VDB=0.0271;AF1=0.5;AC1=1;DP4=5,1,11,4;MQ=60;FQ=90.9;PV4=1,2.6e-08,1,1 GT:PL:GQ 0/1:136,0,118:99 chr4 6374230 . CA CAA 217 . INDEL;DP=33;VDB=0.0271;AF1=0.5;AC1=1;DP4=8,1,17,6;MQ=59;FQ=81.5;PV4=0.64,1,0.27,0.38 GT:PL:GQ 0/1:255,0,116:99 chr4 6374468 . T C 35 . DP=9;VDB=0.0133;AF1=0.5;AC1=1;DP4=1,5,1,2;MQ=60;FQ=38;PV4=1,0.34,1,0.14 GT:PL:GQ 0/1:65,0,137:68 chr4 6377530 . C G 37 . DP=13;VDB=0.0066;AF1=0.5;AC1=1;DP4=4,1,5,2;MQ=60;FQ=40;PV4=1,7.1e-05,1,1 GT:PL:GQ 0/1:67,0,113:70 chr4 6377534 . A G 222 . DP=14;VDB=0.0216;AF1=1;AC1=2;DP4=0,0,10,3;MQ=60;FQ=-66 GT:PL:GQ 1/1:255,39,0:75 chr4 6377713 . G C 209 . DP=10;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,3,6;MQ=60;FQ=-54 GT:PL:GQ 1/1:242,27,0:51 chr4 6382919 . C T 97 . DP=51;VDB=0.0244;AF1=0.5;AC1=1;DP4=14,15,11,9;MQ=60;FQ=100;PV4=0.77,3.2e-16,1,1 GT:PL:GQ 0/1:127,0,255:99 chr4 6415585 . T C 225 . DP=33;VDB=0.0399;AF1=0.5;AC1=1;DP4=10,4,10,8;MQ=59;FQ=198;PV4=0.47,0.17,1,0.15 GT:PL:GQ 0/1:255,0,225:99 chr4 6415618 . G A 159 . DP=42;VDB=0.0216;AF1=0.5;AC1=1;DP4=12,8,11,9;MQ=58;FQ=162;PV4=1,1.8e-09,0.32,1 GT:PL:GQ 0/1:189,0,255:99 chr4 6536979 . G A 222 . DP=22;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,16,5;MQ=60;FQ=-90 GT:PL:GQ 1/1:255,63,0:99 chr4 6578487 . A G 222 . DP=44;VDB=0.0400;AF1=1;AC1=2;DP4=0,0,13,23;MQ=60;FQ=-135 GT:PL:GQ 1/1:255,108,0:99 chr4 6580283 . A G 116 . DP=12;VDB=0.0033;AF1=0.5;AC1=1;DP4=2,3,0,7;MQ=58;FQ=97;PV4=0.15,1,1,0.41 GT:PL:GQ 0/1:146,0,124:99 chr4 6591015 . C T 91 . DP=15;VDB=0.0140;AF1=1;AC1=2;DP4=0,0,0,15;MQ=58;FQ=-72 GT:PL:GQ 1/1:124,45,0:87 chr4 6594827 . A G 222 . DP=57;VDB=0.0118;AF1=1;AC1=2;DP4=0,0,48,8;MQ=60;FQ=-196 GT:PL:GQ 1/1:255,169,0:99 chr4 6594947 . A C 67 . DP=127;VDB=0.0271;AF1=0.5;AC1=1;DP4=23,43,13,31;MQ=59;FQ=70;PV4=0.68,1.1e-44,1,1 GT:PL:GQ 0/1:97,0,255:99 chr4 6596360 . G A 97 . DP=30;VDB=0.0380;AF1=0.5;AC1=1;DP4=3,11,2,11;MQ=60;FQ=100;PV4=1,1.3e-08,1,1 GT:PL:GQ 0/1:127,0,224:99 chr4 6611813 . T C 111 . DP=16;VDB=0.0118;AF1=0.5;AC1=1;DP4=0,9,1,5;MQ=60;FQ=114;PV4=0.4,1,1,0.31 GT:PL:GQ 0/1:141,0,152:99 chr4 6612728 . C T 225 . DP=110;VDB=0.0392;AF1=0.5;AC1=1;DP4=15,34,21,36;MQ=60;FQ=225;PV4=0.54,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr4 6619165 . A G 222 . DP=37;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,32,5;MQ=60;FQ=-138 GT:PL:GQ 1/1:255,111,0:99 chr4 6619204 . G A 222 . DP=53;VDB=0.0392;AF1=1;AC1=2;DP4=0,0,30,20;MQ=60;FQ=-178 GT:PL:GQ 1/1:255,151,0:99 chr4 6623032 . G T 222 . DP=86;VDB=0.0399;AF1=1;AC1=2;DP4=0,0,40,43;MQ=60;FQ=-277 GT:PL:GQ 1/1:255,250,0:99 chr4 6698667 . T C 222 . DP=46;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,31,14;MQ=57;FQ=-162 GT:PL:GQ 1/1:255,135,0:99 chr4 6698706 . A C 222 . DP=50;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,32,16;MQ=59;FQ=-171 GT:PL:GQ 1/1:255,144,0:99 chr4 6925009 . A C 19.1 . DP=8;VDB=0.0008;AF1=0.5;AC1=1;DP4=3,0,3,0;MQ=56;FQ=22;PV4=1,0.0014,0.19,1 GT:PL:GQ 0/1:49,0,81:52 chr4 6925237 . C G 185 . DP=88;VDB=0.0365;AF1=0.5;AC1=1;DP4=18,26,17,24;MQ=59;FQ=188;PV4=1,5.9e-20,1,1 GT:PL:GQ 0/1:215,0,255:99 chr4 6956059 . T C 225 . DP=70;VDB=0.0365;AF1=0.5;AC1=1;DP4=20,14,21,13;MQ=60;FQ=225;PV4=1,0.046,1,0.42 GT:PL:GQ 0/1:255,0,255:99 chr4 6956134 . T C 151 . DP=73;VDB=0.0400;AF1=0.5;AC1=1;DP4=14,21,16,21;MQ=60;FQ=154;PV4=0.81,1.7e-22,1,1 GT:PL:GQ 0/1:181,0,255:99 chr4 6968942 . C T 66 . DP=24;VDB=0.0014;AF1=0.5;AC1=1;DP4=8,1,14,0;MQ=60;FQ=69;PV4=0.39,1.7e-12,1,1 GT:PL:GQ 0/1:96,0,169:99 chr4 6969163 . A G 225 . DP=119;VDB=0.0322;AF1=0.5;AC1=1;DP4=8,46,11,50;MQ=59;FQ=225;PV4=0.8,1,1,0.24 GT:PL:GQ 0/1:255,0,255:99 chr4 7000680 . G A 73 . DP=13;VDB=0.0190;AF1=0.5;AC1=1;DP4=5,3,4,1;MQ=57;FQ=76;PV4=1,0.31,0.3,0.33 GT:PL:GQ 0/1:103,0,181:99 chr4 7002803 . C T 78 . DP=9;VDB=0.0241;AF1=0.5;AC1=1;DP4=2,0,6,1;MQ=60;FQ=17.1;PV4=1,0.0011,1,0.23 GT:PL:GQ 0/1:108,0,44:47 chr4 7006398 . A G 4.13 . DP=3;VDB=0.0196;AF1=0.5002;AC1=1;DP4=1,0,2,0;MQ=60;FQ=-3.24;PV4=1,0.019,1,0.33 GT:PL:GQ 0/1:32,0,28:30 chr4 7006541 . G A 225 . DP=36;VDB=0.0380;AF1=0.5;AC1=1;DP4=11,7,12,6;MQ=59;FQ=225;PV4=1,1,0.16,0.2 GT:PL:GQ 0/1:255,0,255:99 chr4 7027041 . C T 94 . DP=11;VDB=0.0008;AF1=0.5;AC1=1;DP4=1,4,1,5;MQ=58;FQ=90;PV4=1,0.26,1,0.44 GT:PL:GQ 0/1:124,0,118:99 chr4 7044357 . A G 40 . DP=5;VDB=0.0373;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-36 GT:PL:GQ 1/1:72,9,0:16 chr4 7064214 . T G 138 . DP=16;VDB=0.0003;AF1=1;AC1=2;DP4=0,0,0,11;MQ=58;FQ=-60 GT:PL:GQ 1/1:171,33,0:63 chr4 7069804 . C A 225 . DP=60;VDB=0.0392;AF1=0.5;AC1=1;DP4=8,20,19,10;MQ=60;FQ=225;PV4=0.0079,1,1,1 GT:PL:GQ 0/1:255,0,255:99 chr4 7069901 . T C 168 . DP=38;VDB=0.0365;AF1=0.5;AC1=1;DP4=2,10,7,17;MQ=60;FQ=160;PV4=0.69,4.3e-10,1,0.35 GT:PL:GQ 0/1:198,0,187:99 chr4 7312145 . T C 222 . DP=27;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,9,17;MQ=60;FQ=-105 GT:PL:GQ 1/1:255,78,0:99 chr4 7434988 . A G 38 . DP=40;VDB=0.0244;AF1=0.5;AC1=1;DP4=21,4,12,3;MQ=60;FQ=41;PV4=1,1.6e-16,1,1 GT:PL:GQ 0/1:68,0,255:71 chr4 7435379 . A G 179 . DP=79;VDB=0.0380;AF1=1;AC1=2;DP4=0,0,27,51;MQ=60;FQ=-262 GT:PL:GQ 1/1:212,235,0:99 chr4 7436486 . C A 83 . DP=54;VDB=0.0398;AF1=0.5;AC1=1;DP4=18,20,5,11;MQ=60;FQ=86;PV4=0.37,6.1e-14,1,0.43 GT:PL:GQ 0/1:113,0,255:99 chr4 7461769 . A G 136 . DP=37;VDB=0.0365;AF1=0.5;AC1=1;DP4=15,2,12,7;MQ=59;FQ=139;PV4=0.13,1.2e-09,1,1 GT:PL:GQ 0/1:166,0,205:99 chr4 7461826 . CC CCCAC 214 . INDEL;DP=48;VDB=0.0345;AF1=1;AC1=2;DP4=0,0,27,19;MQ=56;FQ=-173 GT:PL:GQ 1/1:255,138,0:99 chr4 7461915 . T A 222 . DP=40;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,14,26;MQ=58;FQ=-147 GT:PL:GQ 1/1:255,120,0:99 chr4 7533227 . T C 189 . DP=64;VDB=0.0271;AF1=0.5;AC1=1;DP4=33,8,19,3;MQ=59;FQ=192;PV4=0.73,1,0.33,1 GT:PL:GQ 0/1:219,0,255:99 chr4 7655693 . G A 30 . DP=8;VDB=0.0004;AF1=0.5;AC1=1;DP4=3,0,5,0;MQ=60;FQ=32.9;PV4=1,0.00027,1,0.37 GT:PL:GQ 0/1:60,0,75:63 chr4 7655759 . T A 174 . DP=48;VDB=0.0298;AF1=0.5;AC1=1;DP4=10,3,23,11;MQ=60;FQ=149;PV4=0.73,6.6e-13,0.27,1 GT:PL:GQ 0/1:204,0,176:99 chr4 7655855 . C T 70 . DP=95;VDB=0.0400;AF1=0.5;AC1=1;DP4=24,29,16,20;MQ=59;FQ=73;PV4=1,2.3e-37,0.39,1 GT:PL:GQ 0/1:100,0,255:99 chr4 7684641 . C A 44 . DP=15;VDB=0.0118;AF1=0.5;AC1=1;DP4=1,5,0,9;MQ=58;FQ=47;PV4=0.4,3.1e-08,0.22,0.093 GT:PL:GQ 0/1:74,0,129:77 chr4 7691193 . G C 222 . DP=95;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,61,32;MQ=60;FQ=-282 GT:PL:GQ 1/1:255,255,0:99 chr4 7691419 . A G 151 . DP=24;VDB=0.0081;AF1=1;AC1=2;DP4=0,1,0,19;MQ=59;FQ=-58;PV4=1,0.18,1,1 GT:PL:GQ 1/1:184,31,0:59 chr4 7705796 . G A 20 . DP=21;VDB=0.0019;AF1=0.5;AC1=1;DP4=12,1,7,0;MQ=60;FQ=23;PV4=1,5e-11,1,1 GT:PL:GQ 0/1:50,0,205:53 chr4 7714490 . T C 222 . DP=53;VDB=0.0322;AF1=1;AC1=2;DP4=0,0,17,34;MQ=59;FQ=-181 GT:PL:GQ 1/1:255,154,0:99 chr4 7714640 . C G 96 . DP=11;VDB=0.0001;AF1=0.5;AC1=1;DP4=0,5,0,6;MQ=60;FQ=82.9;PV4=1,1,1,0.0055 GT:PL:GQ 0/1:126,0,110:99 chr4 7716910 . C T 225 . DP=129;VDB=0.0399;AF1=0.5;AC1=1;DP4=37,21,41,25;MQ=59;FQ=225;PV4=0.85,0.051,1,0.25 GT:PL:GQ 0/1:255,0,255:99 chr4 7716932 . T C,A 192 . DP=146;VDB=0.0365;AF1=1;AC1=2;DP4=0,0,82,59;MQ=60;FQ=-282 GT:PL:GQ 1/1:225,255,0,225,255,222